Query         003121
Match_columns 846
No_of_seqs    557 out of 3432
Neff          7.5 
Searched_HMMs 13730
Date          Mon Mar 25 14:02:49 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003121.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003121hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1uwha_ d.144.1.7 (A:) B-Raf k 100.0 3.5E-50 2.6E-54  430.0  21.9  263  526-802     6-274 (276)
  2 d1sm2a_ d.144.1.7 (A:) Tyrosin 100.0 1.1E-48 8.3E-53  415.3  22.5  254  528-801     5-262 (263)
  3 d1qpca_ d.144.1.7 (A:) Lymphoc 100.0 1.2E-48 8.7E-53  417.3  22.1  256  526-800    11-269 (272)
  4 d1nvra_ d.144.1.7 (A:) Cell cy 100.0 2.3E-48 1.7E-52  414.6  21.2  247  528-791     5-257 (271)
  5 d1yhwa1 d.144.1.7 (A:249-541)  100.0 6.4E-48 4.6E-52  415.7  23.8  244  528-791    20-267 (293)
  6 d1jpaa_ d.144.1.7 (A:) ephb2 r 100.0 3.6E-48 2.6E-52  419.2  20.8  258  528-800    26-292 (299)
  7 d1u59a_ d.144.1.7 (A:) Tyrosin 100.0 5.5E-48   4E-52  414.8  21.1  255  528-801     8-272 (285)
  8 d1opja_ d.144.1.7 (A:) Abelson 100.0   4E-48 2.9E-52  416.4  19.4  256  525-799    14-274 (287)
  9 d2java1 d.144.1.7 (A:3-271) Se 100.0 3.4E-48 2.5E-52  413.0  17.2  247  528-791     4-263 (269)
 10 d1xbba_ d.144.1.7 (A:) Tyrosin 100.0 1.1E-47 8.3E-52  410.7  21.3  245  534-798    13-267 (277)
 11 d2j4za1 d.144.1.7 (A:126-388)  100.0 5.2E-48 3.8E-52  410.2  18.4  240  528-791     6-252 (263)
 12 d2jfla1 d.144.1.7 (A:21-308) S 100.0 1.2E-47 8.5E-52  412.8  20.3  246  528-791    12-266 (288)
 13 d1k2pa_ d.144.1.7 (A:) Bruton' 100.0 5.7E-47 4.1E-51  401.0  23.5  250  528-797     4-257 (258)
 14 d1mqba_ d.144.1.7 (A:) epha2 r 100.0 3.6E-47 2.6E-51  408.1  21.9  258  527-801     6-273 (283)
 15 d1rjba_ d.144.1.7 (A:) Fl cyto 100.0   4E-47 2.9E-51  415.8  22.0  256  526-796    35-322 (325)
 16 d1uu3a_ d.144.1.7 (A:) 3-phosp 100.0 2.1E-47 1.5E-51  410.7  15.5  244  528-791     8-258 (288)
 17 d1lufa_ d.144.1.7 (A:) Musk ty 100.0 1.3E-46 9.6E-51  407.2  20.9  263  521-799     6-300 (301)
 18 d1fmka3 d.144.1.7 (A:249-533)  100.0 1.5E-46 1.1E-50  403.3  20.3  255  527-800    16-273 (285)
 19 d1byga_ d.144.1.7 (A:) Carboxy 100.0 8.5E-47 6.2E-51  400.5  17.9  250  528-801     7-260 (262)
 20 d1t4ha_ d.144.1.7 (A:) Protein 100.0 2.9E-46 2.1E-50  398.2  21.0  239  531-791    12-263 (270)
 21 d1s9ja_ d.144.1.7 (A:) Dual sp 100.0 5.5E-47   4E-51  414.1  15.8  250  527-792     5-296 (322)
 22 d1mp8a_ d.144.1.7 (A:) Focal a 100.0 1.4E-46   1E-50  401.3  18.4  252  527-799     6-267 (273)
 23 d1a06a_ d.144.1.7 (A:) Calmodu 100.0 1.9E-46 1.4E-50  407.0  19.1  246  527-791     8-261 (307)
 24 d1xkka_ d.144.1.7 (A:) EGF rec 100.0 4.4E-46 3.2E-50  406.1  21.6  253  528-800     9-272 (317)
 25 d1u5ra_ d.144.1.7 (A:) Serine/ 100.0 3.5E-46 2.6E-50  405.1  20.4  239  529-791    16-264 (309)
 26 d1koaa2 d.144.1.7 (A:5915-6264 100.0 6.2E-46 4.5E-50  409.9  21.7  246  528-791    26-277 (350)
 27 d1koba_ d.144.1.7 (A:) Twitchi 100.0 9.3E-46 6.8E-50  408.9  21.2  246  528-791    29-280 (352)
 28 d1ywna1 d.144.1.7 (A:818-1166) 100.0 1.5E-45 1.1E-49  398.2  20.5  263  519-799     4-295 (299)
 29 d1jksa_ d.144.1.7 (A:) Death-a 100.0   2E-45 1.4E-49  396.4  20.9  245  528-791    10-268 (293)
 30 d1o6ya_ d.144.1.7 (A:) Mycobac 100.0   3E-45 2.2E-49  391.7  21.5  259  527-799     6-275 (277)
 31 d1u46a_ d.144.1.7 (A:) Activat 100.0 7.3E-46 5.3E-50  395.8  16.3  255  528-798     8-272 (273)
 32 d1o6la_ d.144.1.7 (A:) Pkb kin 100.0 1.9E-45 1.4E-49  403.9  19.4  238  528-786     5-249 (337)
 33 d1fota_ d.144.1.7 (A:) cAMP-de 100.0 2.6E-45 1.9E-49  399.5  19.8  234  528-785     4-244 (316)
 34 d1r0pa_ d.144.1.7 (A:) Hepatoc 100.0 1.6E-44 1.2E-48  392.4  23.9  255  533-802    32-295 (311)
 35 d1fvra_ d.144.1.7 (A:) Tie2 ki 100.0 8.2E-45 5.9E-49  394.5  21.0  255  528-801    10-286 (309)
 36 d1fgka_ d.144.1.7 (A:) Fibrobl 100.0 1.1E-44   8E-49  391.7  20.6  259  527-801    12-297 (299)
 37 d1p4oa_ d.144.1.7 (A:) Insulin 100.0 1.5E-44 1.1E-48  392.2  19.1  259  524-798    16-292 (308)
 38 d1rdqe_ d.144.1.7 (E:) cAMP-de 100.0 1.2E-44   9E-49  399.6  18.4  234  528-785    41-281 (350)
 39 d1xjda_ d.144.1.7 (A:) Protein 100.0   2E-44 1.5E-48  393.2  18.3  243  528-791     2-252 (320)
 40 d1omwa3 d.144.1.7 (A:186-549)  100.0 3.8E-44 2.7E-48  397.8  20.3  239  528-787     4-254 (364)
 41 d1phka_ d.144.1.7 (A:) gamma-s 100.0 9.7E-44 7.1E-48  380.0  22.8  243  528-791     3-267 (277)
 42 d1ua2a_ d.144.1.7 (A:) Cell di 100.0 1.9E-43 1.4E-47  381.7  25.0  244  533-791     3-277 (299)
 43 d1vjya_ d.144.1.7 (A:) Type I  100.0 1.8E-44 1.3E-48  390.8  16.7  261  529-801     4-298 (303)
 44 d1t46a_ d.144.1.7 (A:) c-KIT r 100.0 1.3E-43 9.6E-48  385.3  22.1  257  526-800    21-307 (311)
 45 d1tkia_ d.144.1.7 (A:) Titin,  100.0 8.3E-44 6.1E-48  388.5  19.0  248  527-793     4-257 (321)
 46 d2ozaa1 d.144.1.7 (A:51-385) M 100.0 8.9E-44 6.5E-48  390.5  19.1  243  528-792    11-270 (335)
 47 d1xwsa_ d.144.1.7 (A:) Proto-o 100.0 1.6E-43 1.2E-47  377.4  17.3  234  528-791     4-252 (273)
 48 d1gz8a_ d.144.1.7 (A:) Cyclin- 100.0 8.7E-43 6.3E-47  376.4  22.9  250  528-791     2-280 (298)
 49 d1blxa_ d.144.1.7 (A:) Cyclin- 100.0 1.3E-42 9.8E-47  375.7  23.4  250  527-791     6-290 (305)
 50 d1ob3a_ d.144.1.7 (A:) Cyclin- 100.0 2.5E-42 1.8E-46  370.4  21.2  249  528-791     2-278 (286)
 51 d3blha1 d.144.1.7 (A:8-325) Ce 100.0 3.5E-41 2.5E-45  366.8  25.4  254  527-791     9-302 (318)
 52 d1ckia_ d.144.1.7 (A:) Casein  100.0 1.1E-41 7.9E-46  367.7  21.2  264  528-802     7-280 (299)
 53 d1q5ka_ d.144.1.7 (A:) Glycoge 100.0 3.1E-41 2.3E-45  372.5  22.7  247  529-792    21-301 (350)
 54 d1csna_ d.144.1.7 (A:) Casein  100.0 1.4E-40 9.8E-45  358.4  26.8  265  527-805     4-283 (293)
 55 d1pmea_ d.144.1.7 (A:) MAP kin 100.0 3.9E-41 2.9E-45  371.0  20.2  252  527-791     7-292 (345)
 56 d1cm8a_ d.144.1.7 (A:) MAP kin 100.0 7.4E-41 5.4E-45  368.7  21.4  246  527-792    17-299 (346)
 57 d3bqca1 d.144.1.7 (A:3-330) Pr 100.0 7.7E-40 5.6E-44  357.8  24.2  243  527-791    34-316 (328)
 58 d1unla_ d.144.1.7 (A:) Cyclin- 100.0 7.4E-40 5.4E-44  351.3  22.7  249  528-791     2-280 (292)
 59 d1vzoa_ d.144.1.7 (A:) Ribosom 100.0 8.3E-41   6E-45  364.8  14.4  242  528-787    24-281 (322)
 60 d2b1pa1 d.144.1.7 (A:46-400) c 100.0 1.2E-39 8.7E-44  360.4  20.9  245  528-791    17-308 (355)
 61 d2gfsa1 d.144.1.7 (A:5-352) MA 100.0 1.4E-39   1E-43  358.3  17.3  246  527-791    17-298 (348)
 62 d1q8ya_ d.144.1.7 (A:) Sky1p { 100.0 1.2E-35 8.8E-40  328.1  18.3  249  528-791    13-325 (362)
 63 d1zara2 d.144.1.9 (A:91-281) R  99.9 5.1E-22 3.7E-26  198.6  11.1  162  531-725     3-189 (191)
 64 d2gm3a1 c.26.2.4 (A:5-175) Put  99.8 6.1E-19 4.4E-23  172.8  14.8  144   45-198     2-159 (171)
 65 d1mjha_ c.26.2.4 (A:) "Hypothe  99.7 7.7E-17 5.6E-21  155.5  15.8  149   43-198     2-157 (160)
 66 d2z3va1 c.26.2.4 (A:2-136) Hyp  99.6 1.4E-15   1E-19  142.1  12.4  132   45-196     2-135 (135)
 67 d1tq8a_ c.26.2.4 (A:) Hypothet  99.5 1.7E-14 1.3E-18  136.4  13.4  139   45-197     6-145 (147)
 68 d1q77a_ c.26.2.4 (A:) Hypothet  99.5 1.1E-14 8.3E-19  135.9   6.5  122   45-173     5-128 (138)
 69 d1jmva_ c.26.2.4 (A:) Universa  99.5 5.1E-14 3.7E-18  131.9  10.7  134   43-196     1-136 (140)
 70 d1j7la_ d.144.1.6 (A:) Type II  98.4   3E-07 2.2E-11   93.9  10.6  145  523-675     9-212 (263)
 71 d1nd4a_ d.144.1.6 (A:) Aminogl  97.6 7.1E-05 5.2E-09   75.2  10.3  127  535-675    17-204 (255)
 72 d2pula1 d.144.1.6 (A:5-396) Me  97.5 0.00014   1E-08   78.7  10.3   75  534-608    32-118 (392)
 73 d2ppqa1 d.144.1.6 (A:5-320) Ho  96.7  0.0049 3.6E-07   63.5  13.0  153  521-675     6-212 (316)
 74 d1zyla1 d.144.1.6 (A:4-328) Rd  96.2   0.013 9.5E-07   60.7  12.4  132  542-676    36-220 (325)
 75 d1nw1a_ d.144.1.8 (A:) Choline  96.2  0.0069   5E-07   64.7  10.3   72  534-609    48-129 (395)
 76 d1wy5a1 c.26.2.5 (A:1-216) Til  87.0     1.2 8.6E-05   42.5   9.9   93   44-165    24-136 (216)
 77 d2c5sa1 c.26.2.6 (A:174-391) T  77.8     6.4 0.00046   36.4  11.1   35   44-81      4-38  (218)
 78 d1np7a2 c.28.1.1 (A:1-204) Cry  70.0      11 0.00081   34.7  10.5   96   60-172    22-117 (204)
 79 d1ni5a1 c.26.2.5 (A:0-226) tRN  69.3     3.8 0.00028   38.8   7.0   93   44-164    13-118 (227)
 80 d1cjaa_ d.144.1.3 (A:) Actin-f  63.2     7.6 0.00056   38.6   7.7  132  536-673    76-234 (342)
 81 d2j07a2 c.28.1.1 (A:2-171) DNA  36.2      66  0.0048   28.2   9.2   87   60-172    17-103 (170)
 82 d2flia1 c.1.2.2 (A:3-219) D-ri  30.1      45  0.0033   30.8   7.1   42  119-162   156-197 (217)
 83 d1h1ya_ c.1.2.2 (A:) D-ribulos  26.7      74  0.0054   29.3   8.0   26  138-163   173-198 (220)
 84 d1u3da2 c.28.1.1 (A:13-197) Cr  25.9 1.1E+02   0.008   26.9   8.9   91   60-172    16-106 (185)
 85 d1rpxa_ c.1.2.2 (A:) D-ribulos  23.8      76  0.0055   29.5   7.4   43  118-162   166-208 (230)
 86 d2d13a1 c.26.2.1 (A:2-227) Hyp  22.6 1.5E+02   0.011   27.3   9.3   94   45-164     4-99  (226)
 87 d1o4va_ c.23.8.1 (A:) N5-CAIR   22.5      64  0.0046   28.6   6.1   52  116-167    14-68  (169)
 88 d3bzka5 c.55.3.13 (A:325-473)   22.3      55   0.004   28.4   5.6   48  144-197    49-96  (149)
 89 d1efpb_ c.26.2.3 (B:) Small, b  20.6      83   0.006   29.6   7.0  118   56-207    37-163 (246)

No 1  
>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.5e-50  Score=429.99  Aligned_cols=263  Identities=26%  Similarity=0.410  Sum_probs=209.3

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECCeEEEEEEecCCCCC--CchhHHHHHHHHHhcCCCceeeEecccc-CceEEEEEe
Q 003121          526 ATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQ--GPSEFQQEIDILSKIRHPNLVTLVGACP-EVWTLVYEY  602 (846)
Q Consensus       526 ~~~~f~~~~~LG~G~fG~Vy~g~~~~~~VAIK~l~~~~~~--~~~~f~~Ei~iL~~l~HpnIv~l~g~~~-~~~~lVmEy  602 (846)
                      ..++|.+.++||+|+||+||+|.+++ .||||+++.....  ..+.|.+|+.+|++++|||||+++|++. +..++||||
T Consensus         6 ~~~~~~~~~~lG~G~fg~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~~lv~Ey   84 (276)
T d1uwha_           6 PDGQITVGQRIGSGSFGTVYKGKWHG-DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQW   84 (276)
T ss_dssp             CTTCCCCCSEEEECSSCEEEEEESSS-EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEEC
T ss_pred             ccccEEEEEEEeeCCCcEEEEEEECC-EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEeccEEEEEEec
Confidence            45689999999999999999998765 5999999765332  3467899999999999999999999984 468999999


Q ss_pred             cCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccccc
Q 003121          603 LPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEI  682 (846)
Q Consensus       603 ~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~~  682 (846)
                      |++|+|.+++...  ..++++..++.|+.||+.||.|||+   ++||||||||+||||+.++.+||+|||+|+.......
T Consensus        85 ~~~g~L~~~l~~~--~~~~~~~~~~~i~~qi~~gl~yLH~---~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~  159 (276)
T d1uwha_          85 CEGSSLYHHLHII--ETKFEMIKLIDIARQTAQGMDYLHA---KSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSG  159 (276)
T ss_dssp             CCEEEHHHHHHTS--CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTSSEEECCCCCSCC------
T ss_pred             CCCCCHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHhc---CCEeccccCHHHEEEcCCCCEEEccccceeeccccCC
Confidence            9999999999533  3469999999999999999999999   8999999999999999999999999999987654322


Q ss_pred             cCCCccccccCCCCCCcccCChhhhcc---CCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCCC
Q 003121          683 SSNNTTLCCRTDPKGTFAYMDPEFLAS---GELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAG  759 (846)
Q Consensus       683 ~~~~~~~~~~~~~~Gt~~Y~APE~l~~---~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~~  759 (846)
                      ..      ......||+.|+|||++.+   +.|+.++|||||||+||||+||+.||............ .......+...
T Consensus       160 ~~------~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~-~~~~~~~p~~~  232 (276)
T d1uwha_         160 SH------QFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFM-VGRGYLSPDLS  232 (276)
T ss_dssp             ------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHH-HHHTSCCCCGG
T ss_pred             cc------cccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHH-HhcCCCCCcch
Confidence            11      1134569999999999964   35899999999999999999999999765433221111 11112223233


Q ss_pred             CCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHhhC
Q 003121          760 DWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRASC  802 (846)
Q Consensus       760 ~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~~~  802 (846)
                      ..+...++.+.+|+.+||..+|.+|||+ +++++.|+.+..+.
T Consensus       233 ~~~~~~~~~l~~li~~cl~~dp~~RPt~-~~il~~Le~l~~~~  274 (276)
T d1uwha_         233 KVRSNCPKAMKRLMAECLKKKRDERPLF-PQILASIELLARSL  274 (276)
T ss_dssp             GSCTTCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHHHHTC
T ss_pred             hccccchHHHHHHHHHHcCCCHhHCcCH-HHHHHHHHHHHHcC
Confidence            3444556889999999999999999999 88999999988753


No 2  
>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.1e-48  Score=415.35  Aligned_cols=254  Identities=25%  Similarity=0.467  Sum_probs=201.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CeEEEEEEecCCCCCCchhHHHHHHHHHhcCCCceeeEeccc--cCceEEEEEecC
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEYLP  604 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~-~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lVmEy~~  604 (846)
                      ++|...++||+|+||+||+|.+. +..||||+++... ...+.|.+|+.+|++++|||||+++|+|  .+..++||||++
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~   83 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME   83 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCc-CcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecC
Confidence            47888999999999999999986 4679999997643 3467899999999999999999999998  457899999999


Q ss_pred             CCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccccccC
Q 003121          605 NGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISS  684 (846)
Q Consensus       605 ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~~~~  684 (846)
                      +|+|.+++..  ....+++..++.|+.||+.||.|||+   ++|+||||||+||||+.++.+||+|||+++.........
T Consensus        84 ~g~L~~~l~~--~~~~~~~~~~~~i~~qia~gl~~lH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~  158 (263)
T d1sm2a_          84 HGCLSDYLRT--QRGLFAAETLLGMCLDVCEGMAYLEE---ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTS  158 (263)
T ss_dssp             TCBHHHHHHT--TTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCTTCSGGGEEECGGGCEEECSCC------------
T ss_pred             CCcHHHHhhc--cccCCCHHHHHHHHHHHHHHHHhhhc---cceeecccchhheeecCCCCeEecccchheeccCCCcee
Confidence            9999998853  34568999999999999999999999   899999999999999999999999999998765433211


Q ss_pred             CCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCchHHHHHHhhhhhccccCCCCCCCCh
Q 003121          685 NNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEVQYALDTGKLKNLLDPLAGDWPF  763 (846)
Q Consensus       685 ~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~ellt-G~~pf~~~~~~~~~~~~~~~~~~ld~~~~~~p~  763 (846)
                             .....||+.|+|||++.+..|+.++|||||||++|||+| |++||..............      ......|.
T Consensus       159 -------~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~------~~~~~~p~  225 (263)
T d1sm2a_         159 -------STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDIST------GFRLYKPR  225 (263)
T ss_dssp             -------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHH------TCCCCCCT
T ss_pred             -------ecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHh------cCCCCCcc
Confidence                   123468999999999999999999999999999999999 5677765443322111111      11223345


Q ss_pred             hhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHhh
Q 003121          764 VQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRAS  801 (846)
Q Consensus       764 ~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~~  801 (846)
                      ..++.+.+|+.+||+.+|.+||++ +++++.|+.+..+
T Consensus       226 ~~~~~l~~li~~cl~~~p~~Rps~-~~il~~L~~i~es  262 (263)
T d1sm2a_         226 LASTHVYQIMNHCWKERPEDRPAF-SRLLRQLAEIAES  262 (263)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHccCCHhHCcCH-HHHHHHHHHHHhC
Confidence            567889999999999999999999 8888999988754


No 3  
>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.2e-48  Score=417.26  Aligned_cols=256  Identities=27%  Similarity=0.454  Sum_probs=210.1

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECC-eEEEEEEecCCCCCCchhHHHHHHHHHhcCCCceeeEecccc-CceEEEEEec
Q 003121          526 ATHNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACP-EVWTLVYEYL  603 (846)
Q Consensus       526 ~~~~f~~~~~LG~G~fG~Vy~g~~~~-~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~-~~~~lVmEy~  603 (846)
                      ..++|.+.++||+|+||+||+|.+++ ..||||+++... ...+.|.+|+.+|++++|||||+++|+|. +..++||||+
T Consensus        11 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey~   89 (272)
T d1qpca_          11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYM   89 (272)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECC
T ss_pred             CHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCc-CCHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEeC
Confidence            34578899999999999999999975 679999997543 44678999999999999999999999884 5688999999


Q ss_pred             CCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccccccccc
Q 003121          604 PNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEIS  683 (846)
Q Consensus       604 ~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~~~  683 (846)
                      ++|+|.+++.... ..++++..++.|+.||+.||.|||+   ++|+||||||+||||+.++.+||+|||+|+.+......
T Consensus        90 ~~g~L~~~~~~~~-~~~l~~~~~~~i~~qi~~gl~~lH~---~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~  165 (272)
T d1qpca_          90 ENGSLVDFLKTPS-GIKLTINKLLDMAAQIAEGMAFIEE---RNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYT  165 (272)
T ss_dssp             TTCBHHHHTTSHH-HHTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEE
T ss_pred             CCCcHHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHh---CCcccCccchhheeeecccceeeccccceEEccCCccc
Confidence            9999999874332 2358999999999999999999999   89999999999999999999999999999977543221


Q ss_pred             CCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhC-CCCCCCchHHHHHHhhhhhccccCCCCCCCC
Q 003121          684 SNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTG-RPALGITKEVQYALDTGKLKNLLDPLAGDWP  762 (846)
Q Consensus       684 ~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG-~~pf~~~~~~~~~~~~~~~~~~ld~~~~~~p  762 (846)
                      .       .....||+.|+|||++.++.++.++|||||||+||||+|| .+||........ +..  +   ........|
T Consensus       166 ~-------~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~-~~~--i---~~~~~~~~p  232 (272)
T d1qpca_         166 A-------REGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEV-IQN--L---ERGYRMVRP  232 (272)
T ss_dssp             C-------CTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHH-HHH--H---HTTCCCCCC
T ss_pred             c-------ccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHH-HHH--H---HhcCCCCCc
Confidence            1       2345699999999999999999999999999999999995 566654443221 111  1   111222334


Q ss_pred             hhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHh
Q 003121          763 FVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRA  800 (846)
Q Consensus       763 ~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~  800 (846)
                      ...++.+.+|+.+||+.+|.+|||+ ++|.+.|+++-.
T Consensus       233 ~~~~~~l~~li~~cl~~~P~~Rpt~-~ei~~~L~~~ft  269 (272)
T d1qpca_         233 DNCPEELYQLMRLCWKERPEDRPTF-DYLRSVLEDFFT  269 (272)
T ss_dssp             TTCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHcCCCHhHCcCH-HHHHHHhhhhhh
Confidence            4566889999999999999999999 889899988654


No 4  
>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.3e-48  Score=414.61  Aligned_cols=247  Identities=26%  Similarity=0.361  Sum_probs=197.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCC-CCchhHHHHHHHHHhcCCCceeeEeccc--cCceEEEEEe
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL-QGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEY  602 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~-~~~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lVmEy  602 (846)
                      ++|++.++||+|+||+||+|.+.  +..||||++..... ...+.+.+|+.+|++++|||||++++++  .+..|+||||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy   84 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   84 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEec
Confidence            46889999999999999999986  67899999976533 2346799999999999999999999998  4568899999


Q ss_pred             cCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccccc
Q 003121          603 LPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEI  682 (846)
Q Consensus       603 ~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~~  682 (846)
                      |++|+|.+++.   ....+++..+..++.||+.||.|||+   +||+||||||+||||+.++.+||+|||+|+.+.....
T Consensus        85 ~~gg~L~~~l~---~~~~l~e~~~~~i~~qi~~al~ylH~---~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~  158 (271)
T d1nvra_          85 CSGGELFDRIE---PDIGMPEPDAQRFFHQLMAGVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR  158 (271)
T ss_dssp             CTTEEGGGGSB---TTTBCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred             cCCCcHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHH---cCCccCcccHHHEEECCCCCEEEccchhheeeccCCc
Confidence            99999999994   33579999999999999999999999   8999999999999999999999999999997754322


Q ss_pred             cCCCccccccCCCCCCcccCChhhhccCCC-CchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCCCCC
Q 003121          683 SSNNTTLCCRTDPKGTFAYMDPEFLASGEL-TPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGDW  761 (846)
Q Consensus       683 ~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~-~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~~~~  761 (846)
                      ..      ..+..+||+.|+|||++.+..+ +.++|||||||+||+|+||++||..................    ....
T Consensus       159 ~~------~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~----~~~~  228 (271)
T d1nvra_         159 ER------LLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKT----YLNP  228 (271)
T ss_dssp             EC------CBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCT----TSTT
T ss_pred             cc------cccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCC----CCCc
Confidence            11      1234579999999999988876 57899999999999999999999655432211111111111    1111


Q ss_pred             ChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          762 PFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       762 p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                      ....+..+.+|+.+||+.+|.+|||+ +++
T Consensus       229 ~~~~s~~~~~li~~~L~~dP~~R~t~-~ei  257 (271)
T d1nvra_         229 WKKIDSAPLALLHKILVENPSARITI-PDI  257 (271)
T ss_dssp             GGGSCHHHHHHHHHHSCSSTTTSCCH-HHH
T ss_pred             cccCCHHHHHHHHHHcCCChhHCcCH-HHH
Confidence            22346789999999999999999999 444


No 5  
>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=6.4e-48  Score=415.69  Aligned_cols=244  Identities=25%  Similarity=0.390  Sum_probs=204.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCchhHHHHHHHHHhcCCCceeeEeccc--cCceEEEEEec
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEYL  603 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lVmEy~  603 (846)
                      .+|...++||+|+||+||+|...  +..||||++........+.+.+|+.+|++++|||||+++++|  .+..|+|||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEec
Confidence            46899999999999999999876  788999999876666667899999999999999999999998  45789999999


Q ss_pred             CCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccccccccc
Q 003121          604 PNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEIS  683 (846)
Q Consensus       604 ~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~~~  683 (846)
                      +||+|.+++..    .++++..+..|+.||+.||.|||+   +||+||||||+||||+.+|.+||+|||+|+.+......
T Consensus       100 ~gg~L~~~~~~----~~l~~~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~  172 (293)
T d1yhwa1         100 AGGSLTDVVTE----TCMDEGQIAAVCRECLQALEFLHS---NQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK  172 (293)
T ss_dssp             TTCBHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCC
T ss_pred             CCCcHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHHH---CCCcccCCcHHHeEECCCCcEeeccchhheeecccccc
Confidence            99999998743    359999999999999999999999   89999999999999999999999999999876543211


Q ss_pred             CCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCCCCCCh
Q 003121          684 SNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGDWPF  763 (846)
Q Consensus       684 ~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~~~~p~  763 (846)
                              .....||+.|+|||++.++.|+.++|||||||++|+|+||++||............... .   ......+.
T Consensus       173 --------~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~-~---~~~~~~~~  240 (293)
T d1yhwa1         173 --------RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATN-G---TPELQNPE  240 (293)
T ss_dssp             --------BCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHH-C---SCCCSSGG
T ss_pred             --------ccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhC-C---CCCCCCcc
Confidence                    13456999999999999999999999999999999999999999766544322221111 0   11112344


Q ss_pred             hhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          764 VQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       764 ~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                      ..+..+.+|+.+||..+|.+||++ +++
T Consensus       241 ~~s~~~~~li~~~L~~dP~~R~s~-~ei  267 (293)
T d1yhwa1         241 KLSAIFRDFLNRCLDMDVEKRGSA-KEL  267 (293)
T ss_dssp             GSCHHHHHHHHHHTCSSTTTSCCH-HHH
T ss_pred             cCCHHHHHHHHHHccCChhHCcCH-HHH
Confidence            567889999999999999999999 444


No 6  
>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=3.6e-48  Score=419.18  Aligned_cols=258  Identities=25%  Similarity=0.411  Sum_probs=198.0

Q ss_pred             CCCcccceeeeeCceEEEEEEECC-----eEEEEEEecCCCCC-CchhHHHHHHHHHhcCCCceeeEeccc--cCceEEE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLRH-----MQVAIKMLHPHSLQ-GPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLV  599 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~~-----~~VAIK~l~~~~~~-~~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lV  599 (846)
                      .+|.+.++||+|+||+||+|.+..     ..||||.+...... ..+.|.+|+.+|++++|||||+++|+|  .+..++|
T Consensus        26 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~iv  105 (299)
T d1jpaa_          26 SCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMII  105 (299)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             hhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEE
Confidence            457778899999999999998852     25899988754332 235699999999999999999999998  4578999


Q ss_pred             EEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccccc
Q 003121          600 YEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQ  679 (846)
Q Consensus       600 mEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~  679 (846)
                      ||||++|+|.+++..  ....+++..++.|+.||+.||.|||+   ++|+||||||+||||+.++.+||+|||+++.+..
T Consensus       106 ~Ey~~~g~L~~~~~~--~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~  180 (299)
T d1jpaa_         106 TEFMENGSLDSFLRQ--NDGQFTVIQLVGMLRGIAAGMKYLAD---MNYVHRDLAARNILVNSNLVCKVSDFGLSRFLED  180 (299)
T ss_dssp             EECCTTEEHHHHHHT--TTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCC--------
T ss_pred             EEecCCCcceeeecc--ccCCCCHHHHHHHHHHHHHHHHHHhh---CCCccCccccceEEECCCCcEEECCcccceEccC
Confidence            999999999998853  34569999999999999999999999   8999999999999999999999999999997765


Q ss_pred             ccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCchHHHHHHhhhhhccccCCCC
Q 003121          680 NEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEVQYALDTGKLKNLLDPLA  758 (846)
Q Consensus       680 ~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~ellt-G~~pf~~~~~~~~~~~~~~~~~~ld~~~  758 (846)
                      .......   .......||+.|+|||++.++.|+.++|||||||+||||+| |++||............      .....
T Consensus       181 ~~~~~~~---~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i------~~~~~  251 (299)
T d1jpaa_         181 DTSDPTY---TSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAI------EQDYR  251 (299)
T ss_dssp             ------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHH------HTTCC
T ss_pred             CCCccee---eecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHH------HcCCC
Confidence            4322111   11223468999999999999999999999999999999998 89999765543221111      11112


Q ss_pred             CCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHh
Q 003121          759 GDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRA  800 (846)
Q Consensus       759 ~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~  800 (846)
                      ...|...+..+.+|+.+||+.+|.+||++ .++++.|+.+..
T Consensus       252 ~~~~~~~~~~l~~li~~cl~~~P~~RPs~-~ei~~~L~~~l~  292 (299)
T d1jpaa_         252 LPPPMDCPSALHQLMLDCWQKDRNHRPKF-GQIVNTLDKMIR  292 (299)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSTTTSCCH-HHHHHHHHHHHH
T ss_pred             CCCCccchHHHHHHHHHHcCCCHhHCcCH-HHHHHHHHHHhc
Confidence            23345567889999999999999999999 788889987754


No 7  
>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=5.5e-48  Score=414.76  Aligned_cols=255  Identities=25%  Similarity=0.415  Sum_probs=208.1

Q ss_pred             CCCcccc-eeeeeCceEEEEEEEC----CeEEEEEEecCCCCC-CchhHHHHHHHHHhcCCCceeeEecccc-CceEEEE
Q 003121          528 HNFDPSL-KIGEGGYGSIYKGLLR----HMQVAIKMLHPHSLQ-GPSEFQQEIDILSKIRHPNLVTLVGACP-EVWTLVY  600 (846)
Q Consensus       528 ~~f~~~~-~LG~G~fG~Vy~g~~~----~~~VAIK~l~~~~~~-~~~~f~~Ei~iL~~l~HpnIv~l~g~~~-~~~~lVm  600 (846)
                      ++|.... +||+|+||+||+|.++    +..||||+++..... ..+.|.+|+.+|++++|||||+++|+|. +..++||
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~lvm   87 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVM   87 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccCeEEEEE
Confidence            3455555 4999999999999875    346999999765322 2457999999999999999999999984 5789999


Q ss_pred             EecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccc
Q 003121          601 EYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQN  680 (846)
Q Consensus       601 Ey~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~  680 (846)
                      |||++|+|.+++..  ....+++..++.|+.||+.||.|||+   ++|+||||||+||||+.++.+||+|||+++.+...
T Consensus        88 E~~~~g~L~~~l~~--~~~~l~~~~~~~i~~qi~~gL~ylH~---~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~  162 (285)
T d1u59a_          88 EMAGGGPLHKFLVG--KREEIPVSNVAELLHQVSMGMKYLEE---KNFVHRDLAARNVLLVNRHYAKISDFGLSKALGAD  162 (285)
T ss_dssp             ECCTTEEHHHHHTT--CTTTSCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEEETTEEEECCCTTCEECTTC
T ss_pred             EeCCCCcHHHHhhc--cccCCCHHHHHHHHHHHHHHHHHHHh---CCeecCcCchhheeeccCCceeeccchhhhccccc
Confidence            99999999998742  33579999999999999999999999   89999999999999999999999999999977543


Q ss_pred             cccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCchHHH--HHHhhhhhccccCCC
Q 003121          681 EISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEVQ--YALDTGKLKNLLDPL  757 (846)
Q Consensus       681 ~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~ellt-G~~pf~~~~~~~--~~~~~~~~~~~ld~~  757 (846)
                      ....     .......||+.|+|||++.++.++.++|||||||++|||+| |++||.......  ..+..+        .
T Consensus       163 ~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~--------~  229 (285)
T d1u59a_         163 DSYY-----TARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQG--------K  229 (285)
T ss_dssp             SCEE-----CCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTT--------C
T ss_pred             cccc-----ccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcC--------C
Confidence            2211     11234568999999999999999999999999999999998 999997654332  222221        2


Q ss_pred             CCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHhh
Q 003121          758 AGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRAS  801 (846)
Q Consensus       758 ~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~~  801 (846)
                      ....|...++.+.+|+.+||..+|.+||++ .++.+.|+.+...
T Consensus       230 ~~~~p~~~~~~l~~li~~cl~~~p~~RPs~-~~i~~~L~~~~~~  272 (285)
T d1u59a_         230 RMECPPECPPELYALMSDCWIYKWEDRPDF-LTVEQRMRACYYS  272 (285)
T ss_dssp             CCCCCTTCCHHHHHHHHHTTCSSGGGSCCH-HHHHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHcCCCHhHCcCH-HHHHHHHHHHHHH
Confidence            234455667899999999999999999999 7788888765543


No 8  
>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=4e-48  Score=416.38  Aligned_cols=256  Identities=27%  Similarity=0.473  Sum_probs=209.1

Q ss_pred             hhcCCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCchhHHHHHHHHHhcCCCceeeEecccc--CceEEEE
Q 003121          525 GATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTLVY  600 (846)
Q Consensus       525 ~~~~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~lVm  600 (846)
                      ...++|.+.++||+|+||+||+|.+.  +..||||+++... ...+.|.+|+.+|++++|||||+++|+|.  +..++||
T Consensus        14 i~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~   92 (287)
T d1opja_          14 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT   92 (287)
T ss_dssp             CCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTC-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             ecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCcc-chHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEe
Confidence            34567899999999999999999986  6789999987543 34678999999999999999999999984  5689999


Q ss_pred             EecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccc
Q 003121          601 EYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQN  680 (846)
Q Consensus       601 Ey~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~  680 (846)
                      |||++|+|.+++.... ...+++..++.|+.||+.||.|||+   ++|+||||||+||||+.++.+||+|||+|+.....
T Consensus        93 E~~~~g~l~~~l~~~~-~~~~~~~~~~~i~~qi~~gL~yLH~---~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~  168 (287)
T d1opja_          93 EFMTYGNLLDYLRECN-RQEVSAVVLLYMATQISSAMEYLEK---KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD  168 (287)
T ss_dssp             ECCTTCBHHHHHHHSC-TTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSS
T ss_pred             ecccCcchHHHhhhcc-ccchHHHHHHHHHHHHHHHHHHHHH---CCcccCccccCeEEECCCCcEEEccccceeecCCC
Confidence            9999999999986443 3579999999999999999999999   89999999999999999999999999999976543


Q ss_pred             cccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCC-CCCchHHHHHHhhhhhccccCCCCC
Q 003121          681 EISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPA-LGITKEVQYALDTGKLKNLLDPLAG  759 (846)
Q Consensus       681 ~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~p-f~~~~~~~~~~~~~~~~~~ld~~~~  759 (846)
                      ....       .+...||+.|+|||++.++.|+.++|||||||++|||+||..| |....... ....  +.   .....
T Consensus       169 ~~~~-------~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~-~~~~--i~---~~~~~  235 (287)
T d1opja_         169 TYTA-------HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ-VYEL--LE---KDYRM  235 (287)
T ss_dssp             SSEE-------ETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH-HHHH--HH---TTCCC
T ss_pred             Ccee-------eccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHH-HHHH--Hh---cCCCC
Confidence            2211       1233589999999999999999999999999999999996655 44333222 1111  00   11223


Q ss_pred             CCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHH
Q 003121          760 DWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMR  799 (846)
Q Consensus       760 ~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~  799 (846)
                      ..|...++.+.+|+.+||+.+|.+|||+ +++.+.|+.+.
T Consensus       236 ~~~~~~~~~l~~li~~cl~~dP~~Rps~-~ei~~~L~~~~  274 (287)
T d1opja_         236 ERPEGCPEKVYELMRACWQWNPSDRPSF-AEIHQAFETMF  274 (287)
T ss_dssp             CCCTTCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHTT
T ss_pred             CCCccchHHHHHHHHHHcCCCHhHCcCH-HHHHHHHHHHH
Confidence            3455567889999999999999999999 77888887653


No 9  
>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.4e-48  Score=412.99  Aligned_cols=247  Identities=26%  Similarity=0.415  Sum_probs=192.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCC--chhHHHHHHHHHhcCCCceeeEecccc----CceEEE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG--PSEFQQEIDILSKIRHPNLVTLVGACP----EVWTLV  599 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~--~~~f~~Ei~iL~~l~HpnIv~l~g~~~----~~~~lV  599 (846)
                      ++|++.+.||+|+||+||+|...  +..||||++.......  .+.|.+|+.+|++++|||||+++++|.    ..+|+|
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            47999999999999999999886  6789999998764432  345889999999999999999999873    347899


Q ss_pred             EEecCCCchhhhhccC-CCCCCCCHHHHHHHHHHHHHHHHHHhhcC--CCceEecccCCCceEecCCCceeeeccccccc
Q 003121          600 YEYLPNGSLEDRLSCK-DNSPPLSWQTRIRIATELCSVLIFLHSCK--PHSIVHGDLKPANILLDANFVSKLSDFGISRF  676 (846)
Q Consensus       600 mEy~~ggsL~~~L~~~-~~~~~l~~~~~~~i~~qia~aL~~LH~~~--~~giiHrDLkp~NILl~~~~~vKL~DFGla~~  676 (846)
                      ||||++|+|.+++... .....+++..++.++.||+.||.|||+..  .++||||||||+||||+.++.+||+|||+|+.
T Consensus        84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~  163 (269)
T d2java1          84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARI  163 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHH
T ss_pred             EecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceee
Confidence            9999999999998543 23467999999999999999999999832  13599999999999999999999999999998


Q ss_pred             cccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHH--Hhhhhhcccc
Q 003121          677 LSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYA--LDTGKLKNLL  754 (846)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~--~~~~~~~~~l  754 (846)
                      +......        .....||+.|+|||++.+..|+.++|||||||++|||+||++||...+.....  +..+.     
T Consensus       164 ~~~~~~~--------~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~i~~~~-----  230 (269)
T d2java1         164 LNHDTSF--------AKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGK-----  230 (269)
T ss_dssp             C-------------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTC-----
T ss_pred             cccCCCc--------cccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHHHHcCC-----
Confidence            7543211        12346999999999999999999999999999999999999999766543321  11211     


Q ss_pred             CCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          755 DPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       755 d~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                         ....|...++.+.+|+.+||+.||.+||++ +++
T Consensus       231 ---~~~~~~~~s~~l~~li~~~L~~dp~~Rps~-~el  263 (269)
T d2java1         231 ---FRRIPYRYSDELNEIITRMLNLKDYHRPSV-EEI  263 (269)
T ss_dssp             ---CCCCCTTSCHHHHHHHHHHTCSSGGGSCCH-HHH
T ss_pred             ---CCCCCcccCHHHHHHHHHHcCCChhHCcCH-HHH
Confidence               122344556889999999999999999999 444


No 10 
>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.1e-47  Score=410.71  Aligned_cols=245  Identities=25%  Similarity=0.428  Sum_probs=198.5

Q ss_pred             ceeeeeCceEEEEEEECC----eEEEEEEecCCCCCC--chhHHHHHHHHHhcCCCceeeEecccc-CceEEEEEecCCC
Q 003121          534 LKIGEGGYGSIYKGLLRH----MQVAIKMLHPHSLQG--PSEFQQEIDILSKIRHPNLVTLVGACP-EVWTLVYEYLPNG  606 (846)
Q Consensus       534 ~~LG~G~fG~Vy~g~~~~----~~VAIK~l~~~~~~~--~~~f~~Ei~iL~~l~HpnIv~l~g~~~-~~~~lVmEy~~gg  606 (846)
                      ++||+|+||+||+|.+++    +.||||+++......  .+.|.+|+.+|++++|||||+++|+|. +..+||||||++|
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~~~lvmE~~~~g   92 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELG   92 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccCCEEEEEEcCCCC
Confidence            469999999999998753    569999997643322  356999999999999999999999994 4688999999999


Q ss_pred             chhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccccccCCC
Q 003121          607 SLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNN  686 (846)
Q Consensus       607 sL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~  686 (846)
                      +|.+++..   ..++++..++.|+.||+.||.|||+   ++||||||||+||||+.++.+||+|||+++.+.......  
T Consensus        93 ~L~~~l~~---~~~l~~~~~~~i~~qi~~gl~ylH~---~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~--  164 (277)
T d1xbba_          93 PLNKYLQQ---NRHVKDKNIIELVHQVSMGMKYLEE---SNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY--  164 (277)
T ss_dssp             EHHHHHHH---CTTCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEE--
T ss_pred             cHHHHHhh---ccCCCHHHHHHHHHHHHHHHhhHHh---CCcccCCCcchhhcccccCcccccchhhhhhcccccccc--
Confidence            99999853   3569999999999999999999999   899999999999999999999999999998765432211  


Q ss_pred             ccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCchHHH--HHHhhhhhccccCCCCCCCCh
Q 003121          687 TTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEVQ--YALDTGKLKNLLDPLAGDWPF  763 (846)
Q Consensus       687 ~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~ellt-G~~pf~~~~~~~--~~~~~~~~~~~ld~~~~~~p~  763 (846)
                         .......||+.|+|||++.++.++.++|||||||++|||+| |++||.......  ..+..+        .....|.
T Consensus       165 ---~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~--------~~~~~p~  233 (277)
T d1xbba_         165 ---KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKG--------ERMGCPA  233 (277)
T ss_dssp             ---EC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT--------CCCCCCT
T ss_pred             ---ccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcC--------CCCCCCc
Confidence               11234569999999999999999999999999999999998 899997654432  112221        2233455


Q ss_pred             hhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHH
Q 003121          764 VQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPM  798 (846)
Q Consensus       764 ~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l  798 (846)
                      ..+..+.+|+.+||+.+|.+||++ .+|...|+..
T Consensus       234 ~~~~~~~~li~~cl~~dp~~RPs~-~~i~~~L~~~  267 (277)
T d1xbba_         234 GCPREMYDLMNLCWTYDVENRPGF-AAVELRLRNY  267 (277)
T ss_dssp             TCCHHHHHHHHHHTCSSTTTSCCH-HHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCCHhHCcCH-HHHHHHhhCH
Confidence            567899999999999999999999 7777777654


No 11 
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=5.2e-48  Score=410.17  Aligned_cols=240  Identities=26%  Similarity=0.443  Sum_probs=201.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCC---CCCCchhHHHHHHHHHhcCCCceeeEecccc--CceEEEE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTLVY  600 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~---~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~lVm  600 (846)
                      ++|.+.+.||+|+||+||+|...  ++.||||++...   .......+.+|+.+|++++|||||++++++.  +..++||
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            36899999999999999999986  578999998643   2234567899999999999999999999984  4688999


Q ss_pred             EecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccc
Q 003121          601 EYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQN  680 (846)
Q Consensus       601 Ey~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~  680 (846)
                      |||++|+|.+++...   .++++..++.|+.||+.||.|||+   ++|+||||||+||||+.++.+||+|||+|+.....
T Consensus        86 Ey~~~g~L~~~l~~~---~~l~e~~~~~i~~qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~  159 (263)
T d2j4za1          86 EYAPLGTVYRELQKL---SKFDEQRTATYITELANALSYCHS---KRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS  159 (263)
T ss_dssp             ECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCC
T ss_pred             eecCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHH---CCeeeeeeccccceecCCCCEeecccceeeecCCC
Confidence            999999999999533   469999999999999999999999   89999999999999999999999999999865432


Q ss_pred             cccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCCCC
Q 003121          681 EISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGD  760 (846)
Q Consensus       681 ~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~~~  760 (846)
                      ..          ....||+.|+|||++.+..|+.++|||||||+||+|+||++||.............+       ....
T Consensus       160 ~~----------~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~-------~~~~  222 (263)
T d2j4za1         160 RR----------TTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISR-------VEFT  222 (263)
T ss_dssp             CC----------EETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHT-------TCCC
T ss_pred             cc----------cccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHHc-------CCCC
Confidence            11          224599999999999999999999999999999999999999976654332211111       1123


Q ss_pred             CChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          761 WPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       761 ~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                      +|...++.+.+|+.+||+.||.+|||+ +++
T Consensus       223 ~p~~~s~~~~~li~~~L~~dp~~R~t~-~ei  252 (263)
T d2j4za1         223 FPDFVTEGARDLISRLLKHNPSQRPML-REV  252 (263)
T ss_dssp             CCTTSCHHHHHHHHHHTCSSGGGSCCH-HHH
T ss_pred             CCccCCHHHHHHHHHHccCCHhHCcCH-HHH
Confidence            455567889999999999999999999 554


No 12 
>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.2e-47  Score=412.79  Aligned_cols=246  Identities=25%  Similarity=0.374  Sum_probs=202.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCchhHHHHHHHHHhcCCCceeeEeccc--cCceEEEEEec
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEYL  603 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lVmEy~  603 (846)
                      +.|++.+.||+|+||+||+|.+.  +..||||++........+.|.+|+++|++++|||||+++++|  .+..++|||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~   91 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   91 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecC
Confidence            46888999999999999999986  578999999876666667899999999999999999999998  45789999999


Q ss_pred             CCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccccccccc
Q 003121          604 PNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEIS  683 (846)
Q Consensus       604 ~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~~~  683 (846)
                      ++|+|.+++...  ..++++..+..|+.||+.||.|||+   ++|+||||||+||||+.++.+||+|||+|+....... 
T Consensus        92 ~~g~L~~~~~~~--~~~l~e~~~~~i~~qi~~gL~ylH~---~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~-  165 (288)
T d2jfla1          92 AGGAVDAVMLEL--ERPLTESQIQVVCKQTLDALNYLHD---NKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQ-  165 (288)
T ss_dssp             TTEEHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHH-
T ss_pred             CCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---CCEEEeecChhheeECCCCCEEEEechhhhccCCCcc-
Confidence            999999987533  3469999999999999999999999   8999999999999999999999999999986543321 


Q ss_pred             CCCccccccCCCCCCcccCChhhhc-----cCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCC
Q 003121          684 SNNTTLCCRTDPKGTFAYMDPEFLA-----SGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLA  758 (846)
Q Consensus       684 ~~~~~~~~~~~~~Gt~~Y~APE~l~-----~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~  758 (846)
                             ......||+.|+|||++.     ...|+.++|||||||+||+|+||++||...............    .+..
T Consensus       166 -------~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~----~~~~  234 (288)
T d2jfla1         166 -------RRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKS----EPPT  234 (288)
T ss_dssp             -------HHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHS----CCCC
T ss_pred             -------cccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcC----CCCC
Confidence                   113456999999999984     456899999999999999999999999765543322211111    1111


Q ss_pred             CCCChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          759 GDWPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       759 ~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                      ...+...+..+.+|+.+||+.||.+|||+ +++
T Consensus       235 ~~~~~~~s~~~~~li~~~L~~dp~~R~t~-~el  266 (288)
T d2jfla1         235 LAQPSRWSSNFKDFLKKCLEKNVDARWTT-SQL  266 (288)
T ss_dssp             CSSGGGSCHHHHHHHHHHSCSSTTTSCCH-HHH
T ss_pred             CCccccCCHHHHHHHHHHccCChhHCcCH-HHH
Confidence            22344567889999999999999999999 444


No 13 
>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=5.7e-47  Score=401.04  Aligned_cols=250  Identities=25%  Similarity=0.449  Sum_probs=208.8

Q ss_pred             CCCcccceeeeeCceEEEEEEECC-eEEEEEEecCCCCCCchhHHHHHHHHHhcCCCceeeEecccc--CceEEEEEecC
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTLVYEYLP  604 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~~-~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~lVmEy~~  604 (846)
                      ++|...++||+|+||+||+|.+++ ..||||+++.... ..+.|.+|+.++++++|||||+++|+|.  ...++||||++
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~-~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~   82 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMA   82 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCT
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC-CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccC
Confidence            578899999999999999999974 5899999986543 4678999999999999999999999984  56899999999


Q ss_pred             CCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccccccC
Q 003121          605 NGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISS  684 (846)
Q Consensus       605 ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~~~~  684 (846)
                      +|+|.+++...  ...+++..+++|+.||+.||.|||+   +||+||||||+||||+.++.+||+|||+++.+.......
T Consensus        83 ~g~l~~~~~~~--~~~~~~~~~~~i~~qi~~gl~~LH~---~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~  157 (258)
T d1k2pa_          83 NGCLLNYLREM--RHRFQTQQLLEMCKDVCEAMEYLES---KQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTS  157 (258)
T ss_dssp             TEEHHHHHHSG--GGCCCHHHHHHHHHHHHHHHHHHHH---TTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCC
T ss_pred             CCcHHHhhhcc--ccCCcHHHHHHHHHHHHHHHHHHhh---cCcccccccceeEEEcCCCcEEECcchhheeccCCCcee
Confidence            99999987533  3568899999999999999999999   899999999999999999999999999998765432211


Q ss_pred             CCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCchHHHHHHhhhhhccccCCCCCCCCh
Q 003121          685 NNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEVQYALDTGKLKNLLDPLAGDWPF  763 (846)
Q Consensus       685 ~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~ellt-G~~pf~~~~~~~~~~~~~~~~~~ld~~~~~~p~  763 (846)
                             .....||+.|+|||++.+..++.++|||||||++|||+| |+.||............      ........|.
T Consensus       158 -------~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i------~~~~~~~~p~  224 (258)
T d1k2pa_         158 -------SVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHI------AQGLRLYRPH  224 (258)
T ss_dssp             -------CCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHH------HTTCCCCCCT
T ss_pred             -------ecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHH------HhCCCCCCcc
Confidence                   134569999999999999999999999999999999998 89999876543321111      1122233455


Q ss_pred             hhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHH
Q 003121          764 VQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEP  797 (846)
Q Consensus       764 ~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~  797 (846)
                      ..++.+.+|+.+||+.+|.+|||+ ++++..|.+
T Consensus       225 ~~~~~l~~li~~cl~~dP~~RPt~-~eil~~L~d  257 (258)
T d1k2pa_         225 LASEKVYTIMYSCWHEKADERPTF-KILLSNILD  257 (258)
T ss_dssp             TCCHHHHHHHHHTTCSSGGGSCCH-HHHHHHHHC
T ss_pred             cccHHHHHHHHHHccCCHhHCcCH-HHHHHHhhC
Confidence            667899999999999999999999 777766643


No 14 
>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.6e-47  Score=408.08  Aligned_cols=258  Identities=26%  Similarity=0.446  Sum_probs=200.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEECC------eEEEEEEecCCCCC-CchhHHHHHHHHHhcCCCceeeEecccc--CceE
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLRH------MQVAIKMLHPHSLQ-GPSEFQQEIDILSKIRHPNLVTLVGACP--EVWT  597 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~~------~~VAIK~l~~~~~~-~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~  597 (846)
                      .+.|...++||+|+||.||+|.+++      ..||||+++..... ....|.+|+.+|++++|||||+++|+|.  +..+
T Consensus         6 ~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~   85 (283)
T d1mqba_           6 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM   85 (283)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceE
Confidence            3468888999999999999998764      36999999754332 2346889999999999999999999984  5789


Q ss_pred             EEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccc
Q 003121          598 LVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFL  677 (846)
Q Consensus       598 lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~  677 (846)
                      +|||||.+|+|.+++...  ...+++..++.++.||+.||.|||+   ++|+||||||+||||+.++.+||+|||+++.+
T Consensus        86 ~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~i~~gl~~lH~---~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~  160 (283)
T d1mqba_          86 IITEYMENGALDKFLREK--DGEFSVLQLVGMLRGIAAGMKYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVL  160 (283)
T ss_dssp             EEEECCTTEEHHHHHHHT--TTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred             EEEEecccCcchhhhhcc--cccccHHHHHHHHHHHHHhhhhccc---cccccCccccceEEECCCCeEEEcccchhhcc
Confidence            999999999999887533  3569999999999999999999999   89999999999999999999999999999976


Q ss_pred             ccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhC-CCCCCCchHHHHHHhhhhhccccCC
Q 003121          678 SQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTG-RPALGITKEVQYALDTGKLKNLLDP  756 (846)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG-~~pf~~~~~~~~~~~~~~~~~~ld~  756 (846)
                      ........     ......||+.|+|||++.++.++.++|||||||+||||+|| .+|+........ +.     .+.+.
T Consensus       161 ~~~~~~~~-----~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~-~~-----~i~~~  229 (283)
T d1mqba_         161 EDDPEATY-----TTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEV-MK-----AINDG  229 (283)
T ss_dssp             ------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHH-HH-----HHHTT
T ss_pred             cCCCccce-----EeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHH-HH-----HHhcc
Confidence            54322111     11334689999999999999999999999999999999995 455544333221 11     11122


Q ss_pred             CCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHhh
Q 003121          757 LAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRAS  801 (846)
Q Consensus       757 ~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~~  801 (846)
                      .....|...+..+.+|+.+||+.+|.+||++ .+|++.|+.+...
T Consensus       230 ~~~~~~~~~~~~l~~li~~cl~~~p~~RPt~-~eil~~L~~l~~~  273 (283)
T d1mqba_         230 FRLPTPMDCPSAIYQLMMQCWQQERARRPKF-ADIVSILDKLIRA  273 (283)
T ss_dssp             CCCCCCTTCBHHHHHHHHHHTCSSTTTSCCH-HHHHHHHHHHHHS
T ss_pred             CCCCCchhhHHHHHHHHHHHCcCCHhHCcCH-HHHHHHHHHHhhC
Confidence            2334455567889999999999999999999 7888899887653


No 15 
>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=4e-47  Score=415.76  Aligned_cols=256  Identities=26%  Similarity=0.433  Sum_probs=204.6

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECC-------eEEEEEEecCCC-CCCchhHHHHHHHHHhc-CCCceeeEeccc--cC
Q 003121          526 ATHNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHS-LQGPSEFQQEIDILSKI-RHPNLVTLVGAC--PE  594 (846)
Q Consensus       526 ~~~~f~~~~~LG~G~fG~Vy~g~~~~-------~~VAIK~l~~~~-~~~~~~f~~Ei~iL~~l-~HpnIv~l~g~~--~~  594 (846)
                      ..++|.+.++||+|+||+||+|.+.+       ..||+|.+.... ......|.+|+.+|.++ +|||||+++|+|  .+
T Consensus        35 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~  114 (325)
T d1rjba_          35 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG  114 (325)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCC
Confidence            34678999999999999999998753       259999987543 23456799999999998 899999999998  45


Q ss_pred             ceEEEEEecCCCchhhhhccCCC--------------------CCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccC
Q 003121          595 VWTLVYEYLPNGSLEDRLSCKDN--------------------SPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLK  654 (846)
Q Consensus       595 ~~~lVmEy~~ggsL~~~L~~~~~--------------------~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLk  654 (846)
                      ..++|||||++|+|.++|.....                    ...+++..++.|+.||+.||.|||+   ++|||||||
T Consensus       115 ~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~---~~IiHRDlK  191 (325)
T d1rjba_         115 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEF---KSCVHRDLA  191 (325)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHH---TTEEETTCS
T ss_pred             eEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCc
Confidence            68999999999999999965421                    2468999999999999999999999   899999999


Q ss_pred             CCceEecCCCceeeeccccccccccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHh-CCC
Q 003121          655 PANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRP  733 (846)
Q Consensus       655 p~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~ellt-G~~  733 (846)
                      |+|||++.++.+||+|||+|+.........      ..+...||+.|+|||++.++.|+.++|||||||+||||+| |++
T Consensus       192 p~Nill~~~~~~Kl~DFGla~~~~~~~~~~------~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~  265 (325)
T d1rjba_         192 ARNVLVTHGKVVKICDFGLARDIMSDSNYV------VRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVN  265 (325)
T ss_dssp             GGGEEEETTTEEEECCCGGGSCGGGCTTSE------EETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCC
T ss_pred             hhccccccCCeEEEeeccccccccCCCcee------eeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCC
Confidence            999999999999999999998765432211      1133458999999999999999999999999999999998 899


Q ss_pred             CCCCchHHHHHHhhhhhccccCCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHH
Q 003121          734 ALGITKEVQYALDTGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLE  796 (846)
Q Consensus       734 pf~~~~~~~~~~~~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~  796 (846)
                      ||............  +.   .....+.|...++.+.+|+.+||+.+|.+|||+ ++|++.|.
T Consensus       266 Pf~~~~~~~~~~~~--~~---~~~~~~~p~~~~~~l~~li~~cl~~dP~~RPt~-~ei~~~L~  322 (325)
T d1rjba_         266 PYPGIPVDANFYKL--IQ---NGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSF-PNLTSFLG  322 (325)
T ss_dssp             SSTTCCCSHHHHHH--HH---TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHH
T ss_pred             CCCCCCHHHHHHHH--Hh---cCCCCCCCCcCCHHHHHHHHHHcCCChhHCcCH-HHHHHHHh
Confidence            99754332211111  00   112234455667899999999999999999999 77777774


No 16 
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.1e-47  Score=410.74  Aligned_cols=244  Identities=25%  Similarity=0.361  Sum_probs=200.6

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCC---CCCCchhHHHHHHHHHhcCCCceeeEecccc--CceEEEE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTLVY  600 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~---~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~lVm  600 (846)
                      ++|++.+.||+|+||+||+|...  +..||||++...   .....+.+.+|+.+|++++|||||+++++|.  +..|+||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            46999999999999999999986  678999998753   2233467999999999999999999999984  4689999


Q ss_pred             EecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccc
Q 003121          601 EYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQN  680 (846)
Q Consensus       601 Ey~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~  680 (846)
                      |||+||+|.+++...   ..+++..+..++.|++.||.|||+   ++||||||||+||||+.++.+||+|||+|+.+...
T Consensus        88 Ey~~gg~L~~~~~~~---~~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~  161 (288)
T d1uu3a_          88 SYAKNGELLKYIRKI---GSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE  161 (288)
T ss_dssp             CCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECC--
T ss_pred             EccCCCCHHHhhhcc---CCCCHHHHHHHHHHHHHHHHhhcc---ccEEcCcCCccccccCCCceEEecccccceecccC
Confidence            999999999988543   469999999999999999999999   89999999999999999999999999999977543


Q ss_pred             cccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCCCC
Q 003121          681 EISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGD  760 (846)
Q Consensus       681 ~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~~~  760 (846)
                      .....      .....||+.|+|||++.+..|+.++|||||||+||+|+||++||...+.........  .     ....
T Consensus       162 ~~~~~------~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~--~-----~~~~  228 (288)
T d1uu3a_         162 SKQAR------ANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII--K-----LEYD  228 (288)
T ss_dssp             --------------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH--T-----TCCC
T ss_pred             Ccccc------cccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHH--c-----CCCC
Confidence            22111      133569999999999999999999999999999999999999998765433221111  1     1123


Q ss_pred             CChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          761 WPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       761 ~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                      +|...++.+.+||.+||+.||.+|||+ +++
T Consensus       229 ~p~~~s~~~~~li~~~L~~dP~~R~t~-~e~  258 (288)
T d1uu3a_         229 FPEKFFPKARDLVEKLLVLDATKRLGC-EEM  258 (288)
T ss_dssp             CCTTCCHHHHHHHHTTSCSSGGGSTTS-GGG
T ss_pred             CCccCCHHHHHHHHHHccCCHhHCcCH-HHH
Confidence            455567889999999999999999998 444


No 17 
>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=1.3e-46  Score=407.17  Aligned_cols=263  Identities=26%  Similarity=0.439  Sum_probs=212.5

Q ss_pred             hhhhhhcCCCcccceeeeeCceEEEEEEECC-------eEEEEEEecCCCCCC-chhHHHHHHHHHhcCCCceeeEeccc
Q 003121          521 SEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSLQG-PSEFQQEIDILSKIRHPNLVTLVGAC  592 (846)
Q Consensus       521 ~ei~~~~~~f~~~~~LG~G~fG~Vy~g~~~~-------~~VAIK~l~~~~~~~-~~~f~~Ei~iL~~l~HpnIv~l~g~~  592 (846)
                      .+++-..++|++.+.||+|+||+||+|.+.+       +.||||+++...... ...|.+|+.+|++++||||++++++|
T Consensus         6 ~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~   85 (301)
T d1lufa_           6 LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC   85 (301)
T ss_dssp             HHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             hhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeee
Confidence            3445556789999999999999999998754       579999987644322 35699999999999999999999998


Q ss_pred             c--CceEEEEEecCCCchhhhhccCC---------------------CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceE
Q 003121          593 P--EVWTLVYEYLPNGSLEDRLSCKD---------------------NSPPLSWQTRIRIATELCSVLIFLHSCKPHSIV  649 (846)
Q Consensus       593 ~--~~~~lVmEy~~ggsL~~~L~~~~---------------------~~~~l~~~~~~~i~~qia~aL~~LH~~~~~gii  649 (846)
                      .  +..++||||+++|+|.+++....                     ....+++..++.|+.||+.||.|||+   ++||
T Consensus        86 ~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~---~~iv  162 (301)
T d1lufa_          86 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSE---RKFV  162 (301)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCC
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhccc---CCeE
Confidence            4  57899999999999999985432                     13458999999999999999999999   8999


Q ss_pred             ecccCCCceEecCCCceeeeccccccccccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHH
Q 003121          650 HGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLL  729 (846)
Q Consensus       650 HrDLkp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~ell  729 (846)
                      ||||||+||||+.++.+||+|||+|+..........      .+...||+.|+|||++.+..|+.++|||||||++|||+
T Consensus       163 HrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~~------~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell  236 (301)
T d1lufa_         163 HRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKA------DGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIF  236 (301)
T ss_dssp             CSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----------CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             eeEEcccceEECCCCcEEEccchhheeccCCccccc------cCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHH
Confidence            999999999999999999999999987654332211      13356899999999999999999999999999999999


Q ss_pred             hCC-CCCCCchHHHHHHhhhhhccccCCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHH
Q 003121          730 TGR-PALGITKEVQYALDTGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMR  799 (846)
Q Consensus       730 tG~-~pf~~~~~~~~~~~~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~  799 (846)
                      +|. +||...........      +.+......|...+..+.+|+.+||+.+|.+|||+ .+|.+.|+.|.
T Consensus       237 ~~~~~p~~~~~~~e~~~~------v~~~~~~~~p~~~~~~~~~li~~cl~~~P~~RPt~-~ev~~~L~~i~  300 (301)
T d1lufa_         237 SYGLQPYYGMAHEEVIYY------VRDGNILACPENCPLELYNLMRLCWSKLPADRPSF-CSIHRILQRMC  300 (301)
T ss_dssp             TTTCCTTTTSCHHHHHHH------HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHTT
T ss_pred             ccCCCCCCCCCHHHHHHH------HHcCCCCCCCccchHHHHHHHHHHcCCChhHCcCH-HHHHHHHHHhc
Confidence            985 78876654432111      11122233455666889999999999999999999 88888888763


No 18 
>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.5e-46  Score=403.32  Aligned_cols=255  Identities=31%  Similarity=0.472  Sum_probs=202.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEECC-eEEEEEEecCCCCCCchhHHHHHHHHHhcCCCceeeEecccc-CceEEEEEecC
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACP-EVWTLVYEYLP  604 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~~-~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~-~~~~lVmEy~~  604 (846)
                      .++|.+.+.||+|+||+||+|.+++ ..||||+++... ...+.|.+|+.+|++++|||||+++|+|. +..++||||++
T Consensus        16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~-~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv~Ey~~   94 (285)
T d1fmka3          16 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMS   94 (285)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCT
T ss_pred             HHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECccc-CCHHHHHHHHHHHHhcccCCEeEEEEEEecCCeEEEEEecC
Confidence            4579999999999999999999975 579999997543 45678999999999999999999999984 46889999999


Q ss_pred             CCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccccccC
Q 003121          605 NGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISS  684 (846)
Q Consensus       605 ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~~~~  684 (846)
                      +|+|..++.... ...+++..++.|+.+|+.||+|||+   ++|+||||||+||||+.++.+||+|||+++.+.......
T Consensus        95 ~g~l~~~~~~~~-~~~l~~~~~~~i~~~i~~gl~~LH~---~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~  170 (285)
T d1fmka3          95 KGSLLDFLKGET-GKYLRLPQLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTA  170 (285)
T ss_dssp             TCBHHHHHSHHH-HTTCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEECCCCTTC---------
T ss_pred             CCchhhhhhhcc-cccchHHHHHHHHHHHHHHHHHHhh---hheecccccceEEEECCCCcEEEcccchhhhccCCCcee
Confidence            999998885432 2469999999999999999999999   899999999999999999999999999998765433211


Q ss_pred             CCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCC-CCCCCchHHHHHHhhhhhccccCCCCCCCCh
Q 003121          685 NNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGR-PALGITKEVQYALDTGKLKNLLDPLAGDWPF  763 (846)
Q Consensus       685 ~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~-~pf~~~~~~~~~~~~~~~~~~ld~~~~~~p~  763 (846)
                             .....||+.|+|||++.++.++.++|||||||+||||+||. +|+....... .+..-.     .....+.+.
T Consensus       171 -------~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~-~~~~i~-----~~~~~~~~~  237 (285)
T d1fmka3         171 -------RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE-VLDQVE-----RGYRMPCPP  237 (285)
T ss_dssp             ------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH-HHHHHH-----TTCCCCCCT
T ss_pred             -------eccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHH-HHHHHH-----hcCCCCCCc
Confidence                   13346999999999999999999999999999999999954 5554443322 111110     111223445


Q ss_pred             hhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHh
Q 003121          764 VQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRA  800 (846)
Q Consensus       764 ~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~  800 (846)
                      ..++.+.+|+.+||+.+|.+||++ ++|.+.|+++-.
T Consensus       238 ~~~~~l~~li~~cl~~dP~~Rps~-~~i~~~L~~~~~  273 (285)
T d1fmka3         238 ECPESLHDLMCQCWRKEPEERPTF-EYLQAFLEDYFT  273 (285)
T ss_dssp             TSCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHTTTS
T ss_pred             ccCHHHHHHHHHHcccCHhHCcCH-HHHHHHHhhhhc
Confidence            567889999999999999999999 788888886543


No 19 
>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.5e-47  Score=400.54  Aligned_cols=250  Identities=26%  Similarity=0.431  Sum_probs=202.9

Q ss_pred             CCCcccceeeeeCceEEEEEEECCeEEEEEEecCCCCCCchhHHHHHHHHHhcCCCceeeEecccc---CceEEEEEecC
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACP---EVWTLVYEYLP  604 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~---~~~~lVmEy~~  604 (846)
                      ++|.+.++||+|+||.||+|.++++.||||+++...  ..+.|.+|+.+|++++|||||+++|+|.   +.+++||||++
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~   84 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMA   84 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCT
T ss_pred             HHeEEeEEEecCCCeEEEEEEECCeEEEEEEECcHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccC
Confidence            467888999999999999999999999999997543  4578999999999999999999999883   34799999999


Q ss_pred             CCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccccccC
Q 003121          605 NGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISS  684 (846)
Q Consensus       605 ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~~~~  684 (846)
                      +|+|.++|.... ..++++..++.|+.||+.||.|||+   ++|+||||||+|||++.++.+||+|||+++......   
T Consensus        85 ~g~L~~~l~~~~-~~~l~~~~~~~i~~~i~~al~ylH~---~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~---  157 (262)
T d1byga_          85 KGSLVDYLRSRG-RSVLGGDCLLKFSLDVCEAMEYLEG---NNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ---  157 (262)
T ss_dssp             TEEHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTSCEEECCCCC-----------
T ss_pred             CCCHHHHHHhcC-CCCCCHHHHHHHHHHHHhhcccccc---CceeccccchHhheecCCCCEeecccccceecCCCC---
Confidence            999999995432 2358999999999999999999999   899999999999999999999999999998654321   


Q ss_pred             CCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCchHHHHHHhhhhhccccCCCCCCCCh
Q 003121          685 NNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEVQYALDTGKLKNLLDPLAGDWPF  763 (846)
Q Consensus       685 ~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~ellt-G~~pf~~~~~~~~~~~~~~~~~~ld~~~~~~p~  763 (846)
                              ....+|+.|+|||++.++.++.++|||||||++|||+| |++||...........      +......+.|.
T Consensus       158 --------~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~------i~~~~~~~~~~  223 (262)
T d1byga_         158 --------DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPR------VEKGYKMDAPD  223 (262)
T ss_dssp             ------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHH------HTTTCCCCCCT
T ss_pred             --------ccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHH------HHcCCCCCCCc
Confidence                    12348999999999999999999999999999999998 7888876543221111      11122334455


Q ss_pred             hhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHhh
Q 003121          764 VQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRAS  801 (846)
Q Consensus       764 ~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~~  801 (846)
                      ..+..+.+|+.+||..||.+||++ .++.+.|+.++..
T Consensus       224 ~~~~~~~~li~~cl~~dP~~Rps~-~~l~~~L~~i~~~  260 (262)
T d1byga_         224 GCPPAVYEVMKNCWHLDAAMRPSF-LQLREQLEHIKTH  260 (262)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcccCHhHCcCH-HHHHHHHHHHHhC
Confidence            566889999999999999999999 7899999988753


No 20 
>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2.9e-46  Score=398.21  Aligned_cols=239  Identities=23%  Similarity=0.399  Sum_probs=191.0

Q ss_pred             cccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCC--CchhHHHHHHHHHhcCCCceeeEecccc------CceEEEE
Q 003121          531 DPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ--GPSEFQQEIDILSKIRHPNLVTLVGACP------EVWTLVY  600 (846)
Q Consensus       531 ~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~--~~~~f~~Ei~iL~~l~HpnIv~l~g~~~------~~~~lVm  600 (846)
                      ....+||+|+||+||+|.+.  +..||+|++......  ..+.|.+|+++|++++|||||+++++|.      ..+++||
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm   91 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT   91 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence            55668999999999999987  468999998765332  2356899999999999999999999873      2478999


Q ss_pred             EecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCc--eEecccCCCceEec-CCCceeeecccccccc
Q 003121          601 EYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHS--IVHGDLKPANILLD-ANFVSKLSDFGISRFL  677 (846)
Q Consensus       601 Ey~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~g--iiHrDLkp~NILl~-~~~~vKL~DFGla~~~  677 (846)
                      |||++|+|.+++...   ..+++..++.|+.||+.||.|||+   ++  |+||||||+||||+ .++.+||+|||+|+..
T Consensus        92 E~~~~g~L~~~l~~~---~~~~~~~~~~~~~qi~~gl~yLH~---~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~  165 (270)
T d1t4ha_          92 ELMTSGTLKTYLKRF---KVMKIKVLRSWCRQILKGLQFLHT---RTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK  165 (270)
T ss_dssp             ECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT---SSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred             eCCCCCcHHHHHhcc---ccccHHHHHHHHHHHHHHHHHHHH---CCCCEEeCCcChhhceeeCCCCCEEEeecCcceec
Confidence            999999999999543   469999999999999999999999   66  99999999999996 5789999999999864


Q ss_pred             ccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCC
Q 003121          678 SQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPL  757 (846)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~  757 (846)
                      .....          ....||+.|+|||++.+ +|+.++|||||||+||||+||++||............  +.....  
T Consensus       166 ~~~~~----------~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~--i~~~~~--  230 (270)
T d1t4ha_         166 RASFA----------KAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRR--VTSGVK--  230 (270)
T ss_dssp             CTTSB----------EESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHH--HTTTCC--
T ss_pred             cCCcc----------CCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHH--HHcCCC--
Confidence            33211          23469999999999864 6999999999999999999999999754433322211  111111  


Q ss_pred             CCCCChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          758 AGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       758 ~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                      ...++...++.+.+|+.+||+.+|++|||+ +++
T Consensus       231 ~~~~~~~~~~~~~~li~~~l~~dp~~R~s~-~el  263 (270)
T d1t4ha_         231 PASFDKVAIPEVKEIIEGCIRQNKDERYSI-KDL  263 (270)
T ss_dssp             CGGGGGCCCHHHHHHHHHHSCSSGGGSCCH-HHH
T ss_pred             CcccCccCCHHHHHHHHHHccCCHhHCcCH-HHH
Confidence            112233345679999999999999999999 554


No 21 
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=5.5e-47  Score=414.10  Aligned_cols=250  Identities=24%  Similarity=0.388  Sum_probs=197.8

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCC-chhHHHHHHHHHhcCCCceeeEeccc--cCceEEEEE
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG-PSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYE  601 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~-~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lVmE  601 (846)
                      .++|++.++||+|+||+||+|...  +..||+|+++...... ...+.+|+.+|++++|||||+++++|  .+..|+|||
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            457999999999999999999986  6789999998653322 45789999999999999999999998  456899999


Q ss_pred             ecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccccccc
Q 003121          602 YLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNE  681 (846)
Q Consensus       602 y~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~  681 (846)
                      ||+||+|.+++...   ..+++..+..++.||+.||.|||+.  +||+||||||+||||+.+|.+||+|||+|+.+....
T Consensus        85 y~~gg~L~~~l~~~---~~l~~~~~~~~~~qil~aL~yLH~~--~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~  159 (322)
T d1s9ja_          85 HMDGGSLDQVLKKA---GRIPEQILGKVSIAVIKGLTYLREK--HKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM  159 (322)
T ss_dssp             CCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHHH--HCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHT
T ss_pred             cCCCCcHHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHHh--CCEEccccCHHHeeECCCCCEEEeeCCCccccCCCc
Confidence            99999999999643   4599999999999999999999972  379999999999999999999999999998764422


Q ss_pred             ccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhh-----hh-------
Q 003121          682 ISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDT-----GK-------  749 (846)
Q Consensus       682 ~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~-----~~-------  749 (846)
                      .          ...+||+.|+|||++.+..|+.++|||||||++|||+||+.||...+........     +.       
T Consensus       160 ~----------~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (322)
T d1s9ja_         160 A----------NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPR  229 (322)
T ss_dssp             C-------------CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC--------------
T ss_pred             c----------ccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcc
Confidence            1          2346999999999999999999999999999999999999999654321110000     00       


Q ss_pred             ------------------------hccccCCCCCCCC-hhhHHHHHHHHHHHhccCcCCCCChHHHHH
Q 003121          750 ------------------------LKNLLDPLAGDWP-FVQAEQLANLAMRCCEMSRKSRPELGKDVW  792 (846)
Q Consensus       750 ------------------------~~~~ld~~~~~~p-~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~  792 (846)
                                              .........+..+ ...+..+.+|+.+||..||.+|||+ ++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta-~e~L  296 (322)
T d1s9ja_         230 PRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADL-KQLM  296 (322)
T ss_dssp             ----------------CCCCHHHHHHHHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCH-HHHH
T ss_pred             cccccccccccccccccchhHHHHHhhhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCH-HHHh
Confidence                                    0000000000111 1235679999999999999999999 5553


No 22 
>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.4e-46  Score=401.28  Aligned_cols=252  Identities=25%  Similarity=0.403  Sum_probs=197.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEECC-----eEEEEEEecCCCCCC-chhHHHHHHHHHhcCCCceeeEecccc-CceEEE
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLRH-----MQVAIKMLHPHSLQG-PSEFQQEIDILSKIRHPNLVTLVGACP-EVWTLV  599 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~~-----~~VAIK~l~~~~~~~-~~~f~~Ei~iL~~l~HpnIv~l~g~~~-~~~~lV  599 (846)
                      .++|++.+.||+|+||.||+|.+..     ..||||.++...... .+.|.+|+.+|++++|||||+++|+|. +..++|
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~iv   85 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWII   85 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEE
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCeEEEE
Confidence            4579999999999999999998753     458999886543222 356899999999999999999999984 568999


Q ss_pred             EEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccccc
Q 003121          600 YEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQ  679 (846)
Q Consensus       600 mEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~  679 (846)
                      |||+++|+|.+++...  ..++++..++.++.||+.||.|||+   ++|+||||||+|||++.++.+||+|||+|+.+..
T Consensus        86 ~E~~~~g~l~~~~~~~--~~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~  160 (273)
T d1mp8a_          86 MELCTLGELRSFLQVR--KYSLDLASLILYAYQLSTALAYLES---KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED  160 (273)
T ss_dssp             EECCTTEEHHHHHHHT--TTTSCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEEEETTEEEECC---------
T ss_pred             EEeccCCcHHhhhhcc--CCCCCHHHHHHHHHHHHHHhhhhcc---cCeeccccchhheeecCCCcEEEccchhheeccC
Confidence            9999999999987533  3568999999999999999999999   8999999999999999999999999999987654


Q ss_pred             ccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCchHHHH--HHhhhhhccccCC
Q 003121          680 NEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEVQY--ALDTGKLKNLLDP  756 (846)
Q Consensus       680 ~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~ellt-G~~pf~~~~~~~~--~~~~~~~~~~ld~  756 (846)
                      .....       .+...||+.|+|||++.++.|+.++|||||||++|||+| |.+||........  .+..+        
T Consensus       161 ~~~~~-------~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~--------  225 (273)
T d1mp8a_         161 STYYK-------ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENG--------  225 (273)
T ss_dssp             -----------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTT--------
T ss_pred             Cccee-------ccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcC--------
Confidence            32211       123458999999999999999999999999999999998 8999976544322  11211        


Q ss_pred             CCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHH
Q 003121          757 LAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMR  799 (846)
Q Consensus       757 ~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~  799 (846)
                      .....|...++.+.+|+.+||..+|.+|||+ ++|.+.|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~li~~cl~~dp~~Rps~-~ei~~~L~~i~  267 (273)
T d1mp8a_         226 ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRF-TELKAQLSTIL  267 (273)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHcCCCHhHCcCH-HHHHHHHHHHH
Confidence            1223445567889999999999999999999 78888887764


No 23 
>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=1.9e-46  Score=407.02  Aligned_cols=246  Identities=24%  Similarity=0.333  Sum_probs=186.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCC-CchhHHHHHHHHHhcCCCceeeEecccc--CceEEEEE
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ-GPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTLVYE  601 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~-~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~lVmE  601 (846)
                      .+.|++.+.||+|+||+||+|...  +..||||++...... ....+.+|+.+|++++|||||++++++.  +..|+|||
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            356999999999999999999986  678999999765432 2356889999999999999999999984  46899999


Q ss_pred             ecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEec---CCCceeeeccccccccc
Q 003121          602 YLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLD---ANFVSKLSDFGISRFLS  678 (846)
Q Consensus       602 y~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~---~~~~vKL~DFGla~~~~  678 (846)
                      ||+||+|.+++..   ...+++..+..++.||+.||.|||+   ++|+||||||+|||+.   .++.+||+|||+|+...
T Consensus        88 ~~~gg~L~~~l~~---~~~l~e~~~~~~~~qi~~al~ylH~---~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~  161 (307)
T d1a06a_          88 LVSGGELFDRIVE---KGFYTERDASRLIFQVLDAVKYLHD---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMED  161 (307)
T ss_dssp             CCCSCBHHHHHHT---CSCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEESSSSTTCCEEECCC-------
T ss_pred             ccCCCcHHHhhhc---ccCCCHHHHHHHHHHHHHHHHhhhh---ceeeeEEecccceeecccCCCceEEEeccceeEEcc
Confidence            9999999999953   3569999999999999999999999   8999999999999995   57899999999998765


Q ss_pred             cccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCC
Q 003121          679 QNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLA  758 (846)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~  758 (846)
                      .....         ....||+.|+|||++.+..|+.++|||||||+||+|+||++||.............  .... ...
T Consensus       162 ~~~~~---------~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~--~~~~-~~~  229 (307)
T d1a06a_         162 PGSVL---------STACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQIL--KAEY-EFD  229 (307)
T ss_dssp             --------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH--TTCC-CCC
T ss_pred             CCCee---------eeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHh--ccCC-CCC
Confidence            43211         23469999999999999999999999999999999999999997665433221111  1111 111


Q ss_pred             CCCChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          759 GDWPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       759 ~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                      ...+...++.+.+|+.+||..+|.+|||+ +++
T Consensus       230 ~~~~~~~s~~~~~li~~~L~~dP~~R~s~-~ei  261 (307)
T d1a06a_         230 SPYWDDISDSAKDFIRHLMEKDPEKRFTC-EQA  261 (307)
T ss_dssp             TTTTTTSCHHHHHHHHHHSCSSGGGSCCH-HHH
T ss_pred             CccccCCCHHHHHHHHHHccCCHhHCcCH-HHH
Confidence            12233456789999999999999999999 554


No 24 
>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=4.4e-46  Score=406.06  Aligned_cols=253  Identities=23%  Similarity=0.402  Sum_probs=205.4

Q ss_pred             CCCcccceeeeeCceEEEEEEECC------eEEEEEEecCC-CCCCchhHHHHHHHHHhcCCCceeeEecccc-CceEEE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLRH------MQVAIKMLHPH-SLQGPSEFQQEIDILSKIRHPNLVTLVGACP-EVWTLV  599 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~~------~~VAIK~l~~~-~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~-~~~~lV  599 (846)
                      .+|+..++||+|+||+||+|.+..      ..||+|.++.. .....+.|.+|+.+|++++|||||+++|+|. +..+++
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~v   88 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI   88 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeeEE
Confidence            369999999999999999998753      25999998754 3334567999999999999999999999984 567899


Q ss_pred             EEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccccc
Q 003121          600 YEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQ  679 (846)
Q Consensus       600 mEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~  679 (846)
                      |||+.+|+|.+.+...  ...+++..++.|+.||+.||.|||+   ++||||||||+||||+.++.+||+|||+++.+..
T Consensus        89 ~e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~qi~~gl~yLH~---~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~  163 (317)
T d1xkka_          89 TQLMPFGCLLDYVREH--KDNIGSQYLLNWCVQIAKGMNYLED---RRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA  163 (317)
T ss_dssp             EECCTTCBHHHHHHHT--SSSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTT
T ss_pred             EEeccCCccccccccc--ccCCCHHHHHHHHHHHHHHHHHHHH---cCcccCcchhhcceeCCCCCeEeeccccceeccc
Confidence            9999999999887543  4579999999999999999999999   8999999999999999999999999999998754


Q ss_pred             ccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCchHH--HHHHhhhhhccccCC
Q 003121          680 NEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEV--QYALDTGKLKNLLDP  756 (846)
Q Consensus       680 ~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~ellt-G~~pf~~~~~~--~~~~~~~~~~~~ld~  756 (846)
                      ......      .....||+.|+|||++.++.|+.++|||||||+||||+| |.+||......  ...+..+        
T Consensus       164 ~~~~~~------~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~--------  229 (317)
T d1xkka_         164 EEKEYH------AEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKG--------  229 (317)
T ss_dssp             TCC--------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHT--------
T ss_pred             cccccc------ccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcC--------
Confidence            332111      123458999999999999999999999999999999999 89999765432  2222221        


Q ss_pred             CCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHh
Q 003121          757 LAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRA  800 (846)
Q Consensus       757 ~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~  800 (846)
                      .....|...+..+.+|+.+||..+|.+||++ .+++..|..+..
T Consensus       230 ~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~-~eil~~l~~~~~  272 (317)
T d1xkka_         230 ERLPQPPICTIDVYMIMVKCWMIDADSRPKF-RELIIEFSKMAR  272 (317)
T ss_dssp             CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHHHH
T ss_pred             CCCCCCcccCHHHHHHHHHhCCCChhhCcCH-HHHHHHHHHHHh
Confidence            1223455667889999999999999999999 677777777653


No 25 
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=3.5e-46  Score=405.10  Aligned_cols=239  Identities=26%  Similarity=0.351  Sum_probs=195.9

Q ss_pred             CCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCc---hhHHHHHHHHHhcCCCceeeEeccc--cCceEEEEE
Q 003121          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGP---SEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYE  601 (846)
Q Consensus       529 ~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~---~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lVmE  601 (846)
                      .|+..++||+|+||+||+|...  +..||||++........   +.+.+|+.+|++++|||||+++++|  .+..|+|||
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~E   95 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME   95 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEEE
Confidence            4888999999999999999876  57899999986554332   4588999999999999999999998  457899999


Q ss_pred             ecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccccccc
Q 003121          602 YLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNE  681 (846)
Q Consensus       602 y~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~  681 (846)
                      ||.+|+|..++..   ..++++..++.|+.||+.||.|||+   +|||||||||+||||+.++.+||+|||+|+..... 
T Consensus        96 ~~~~g~l~~~~~~---~~~l~e~~~~~i~~qi~~aL~yLH~---~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~-  168 (309)
T d1u5ra_          96 YCLGSASDLLEVH---KKPLQEVEIAAVTHGALQGLAYLHS---HNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-  168 (309)
T ss_dssp             CCSEEHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB-
T ss_pred             ecCCCchHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHh---CCEeccCCCcceEEECCCCCEEEeecccccccCCC-
Confidence            9999999876642   3569999999999999999999999   89999999999999999999999999999865432 


Q ss_pred             ccCCCccccccCCCCCCcccCChhhhcc---CCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCC
Q 003121          682 ISSNNTTLCCRTDPKGTFAYMDPEFLAS---GELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLA  758 (846)
Q Consensus       682 ~~~~~~~~~~~~~~~Gt~~Y~APE~l~~---~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~  758 (846)
                                 ....||+.|+|||++.+   +.|+.++|||||||++|||++|++||.............. ......  
T Consensus       169 -----------~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~-~~~~~~--  234 (309)
T d1u5ra_         169 -----------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQ-NESPAL--  234 (309)
T ss_dssp             -----------CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHH-SCCCCC--
T ss_pred             -----------CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHh-CCCCCC--
Confidence                       23459999999999864   4689999999999999999999999976554432221111 111111  


Q ss_pred             CCCChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          759 GDWPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       759 ~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                        .+...++.+.+|+.+||+.||.+|||+ +++
T Consensus       235 --~~~~~s~~~~~li~~~L~~dP~~Rpt~-~el  264 (309)
T d1u5ra_         235 --QSGHWSEYFRNFVDSCLQKIPQDRPTS-EVL  264 (309)
T ss_dssp             --SCTTSCHHHHHHHHHHTCSSGGGSCCH-HHH
T ss_pred             --CCCCCCHHHHHHHHHHCcCChhHCcCH-HHH
Confidence              122345789999999999999999999 554


No 26 
>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}
Probab=100.00  E-value=6.2e-46  Score=409.94  Aligned_cols=246  Identities=21%  Similarity=0.334  Sum_probs=201.9

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCchhHHHHHHHHHhcCCCceeeEeccc--cCceEEEEEec
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEYL  603 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lVmEy~  603 (846)
                      ++|.+.+.||+|+||.||+|...  |..||||++........+.+.+|+.+|++++|||||+++++|  .+..|+|||||
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~  105 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM  105 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            47999999999999999999986  688999999866544556789999999999999999999998  45789999999


Q ss_pred             CCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEec--CCCceeeecccccccccccc
Q 003121          604 PNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLD--ANFVSKLSDFGISRFLSQNE  681 (846)
Q Consensus       604 ~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~--~~~~vKL~DFGla~~~~~~~  681 (846)
                      +||+|.+++..  ...++++..+..|+.||+.||.|||+   +|||||||||+||||+  .++.+||+|||+++.+....
T Consensus       106 ~gg~L~~~l~~--~~~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~  180 (350)
T d1koaa2         106 SGGELFEKVAD--EHNKMSEDEAVEYMRQVCKGLCHMHE---NNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ  180 (350)
T ss_dssp             CSCBHHHHHTC--TTSCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTS
T ss_pred             CCCCHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHh---cCCeeeeechhHeeeccCCCCeEEEeecchheeccccc
Confidence            99999999843  23569999999999999999999999   8999999999999996  46889999999998765432


Q ss_pred             ccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCCCCC
Q 003121          682 ISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGDW  761 (846)
Q Consensus       682 ~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~~~~  761 (846)
                      ..         ....||+.|+|||++.+..|+.++|||||||++|+|+||++||...+..............   .....
T Consensus       181 ~~---------~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~---~~~~~  248 (350)
T d1koaa2         181 SV---------KVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWN---MDDSA  248 (350)
T ss_dssp             CE---------EEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCC---SCCGG
T ss_pred             cc---------ceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCC---CCccc
Confidence            11         1235999999999999999999999999999999999999999766543322111111100   11111


Q ss_pred             ChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          762 PFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       762 p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                      ....++.+.+||.+||..||.+|||+ +++
T Consensus       249 ~~~~s~~~~~li~~~L~~dP~~R~t~-~ei  277 (350)
T d1koaa2         249 FSGISEDGKDFIRKLLLADPNTRMTI-HQA  277 (350)
T ss_dssp             GGGCCHHHHHHHHHHCCSSGGGSCCH-HHH
T ss_pred             ccCCCHHHHHHHHHHccCChhHCcCH-HHH
Confidence            23456789999999999999999999 554


No 27 
>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}
Probab=100.00  E-value=9.3e-46  Score=408.86  Aligned_cols=246  Identities=22%  Similarity=0.351  Sum_probs=202.6

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCchhHHHHHHHHHhcCCCceeeEeccc--cCceEEEEEec
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEYL  603 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lVmEy~  603 (846)
                      ++|++.+.||+|+||+||+|...  +..||||++..........+.+|+.+|++|+|||||+++++|  .+.+|||||||
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~~  108 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL  108 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEcC
Confidence            46999999999999999999985  688999999865544456788999999999999999999998  45689999999


Q ss_pred             CCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEec--CCCceeeecccccccccccc
Q 003121          604 PNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLD--ANFVSKLSDFGISRFLSQNE  681 (846)
Q Consensus       604 ~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~--~~~~vKL~DFGla~~~~~~~  681 (846)
                      +||+|.+++..  ...++++..++.|+.||+.||.|||+   +|||||||||+||||+  .++.+||+|||+|+.+....
T Consensus       109 ~gg~L~~~~~~--~~~~l~e~~~~~i~~qi~~aL~ylH~---~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~  183 (352)
T d1koba_         109 SGGELFDRIAA--EDYKMSEAEVINYMRQACEGLKHMHE---HSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE  183 (352)
T ss_dssp             CCCBHHHHTTC--TTCCBCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS
T ss_pred             CCChHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHH---CCeeecccccccccccccCCCeEEEeecccceecCCCC
Confidence            99999988743  34569999999999999999999999   8999999999999998  57899999999999875432


Q ss_pred             ccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCCCCC
Q 003121          682 ISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGDW  761 (846)
Q Consensus       682 ~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~~~~  761 (846)
                      ..         ....||+.|+|||++.+..|+.++|||||||+||+|+||++||................  . ......
T Consensus       184 ~~---------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~--~-~~~~~~  251 (352)
T d1koba_         184 IV---------KVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCD--W-EFDEDA  251 (352)
T ss_dssp             CE---------EEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCC--C-CCCSST
T ss_pred             ce---------eeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC--C-CCCccc
Confidence            11         12358999999999999999999999999999999999999997765543222111111  1 111222


Q ss_pred             ChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          762 PFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       762 p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                      +...+..+.+||.+||..||.+|||+ +++
T Consensus       252 ~~~~s~~~~~li~~~L~~dp~~R~s~-~ei  280 (352)
T d1koba_         252 FSSVSPEAKDFIKNLLQKEPRKRLTV-HDA  280 (352)
T ss_dssp             TTTSCHHHHHHHHTTSCSSGGGSCCH-HHH
T ss_pred             ccCCCHHHHHHHHHHccCChhHCcCH-HHH
Confidence            33456789999999999999999999 554


No 28 
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.5e-45  Score=398.17  Aligned_cols=263  Identities=24%  Similarity=0.344  Sum_probs=201.1

Q ss_pred             ChhhhhhhcCCCcccceeeeeCceEEEEEEECC-------eEEEEEEecCCCCC-CchhHHHHHHHHHhc-CCCceeeEe
Q 003121          519 SFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSLQ-GPSEFQQEIDILSKI-RHPNLVTLV  589 (846)
Q Consensus       519 ~~~ei~~~~~~f~~~~~LG~G~fG~Vy~g~~~~-------~~VAIK~l~~~~~~-~~~~f~~Ei~iL~~l-~HpnIv~l~  589 (846)
                      ...+++...++|.+.++||+|+||.||+|.+.+       +.||||+++..... ....+.+|..++.++ +||||+.++
T Consensus         4 ~~~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~   83 (299)
T d1ywna1           4 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL   83 (299)
T ss_dssp             CHHHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CCccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEee
Confidence            344555555689999999999999999998742       57999998754332 234577888888887 689999999


Q ss_pred             cccc---CceEEEEEecCCCchhhhhccCC-------------CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEeccc
Q 003121          590 GACP---EVWTLVYEYLPNGSLEDRLSCKD-------------NSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDL  653 (846)
Q Consensus       590 g~~~---~~~~lVmEy~~ggsL~~~L~~~~-------------~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDL  653 (846)
                      +++.   ...++|||||++|+|.++|....             ....+++..++.|+.||+.||.|||+   ++||||||
T Consensus        84 ~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~---~~ivHrDl  160 (299)
T d1ywna1          84 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRDL  160 (299)
T ss_dssp             EEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHH---TTCCCSCC
T ss_pred             eeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHh---CCCcCCcC
Confidence            9873   35889999999999999986432             13468999999999999999999999   89999999


Q ss_pred             CCCceEecCCCceeeeccccccccccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhC-C
Q 003121          654 KPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTG-R  732 (846)
Q Consensus       654 kp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG-~  732 (846)
                      ||+||||+.++.+||+|||+|+.........      ..+...||+.|+|||++.++.++.++|||||||++|||+|| .
T Consensus       161 Kp~NILl~~~~~~Kl~DFGla~~~~~~~~~~------~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~  234 (299)
T d1ywna1         161 AARNILLSEKNVVKICDFGLARDIYKDPDYV------RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGA  234 (299)
T ss_dssp             CGGGEEECGGGCEEECC------CCSCTTSC------CTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred             CccceeECCCCcEEEccCcchhhcccccccc------ccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCC
Confidence            9999999999999999999998765432211      12345699999999999999999999999999999999996 5


Q ss_pred             CCCCCchHHH---HHHhhhhhccccCCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHH
Q 003121          733 PALGITKEVQ---YALDTGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMR  799 (846)
Q Consensus       733 ~pf~~~~~~~---~~~~~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~  799 (846)
                      +||.......   ..+..+        .....|...++.+.+|+.+||+.+|.+|||+ +++++.|+.+.
T Consensus       235 ~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~-~eil~~L~~il  295 (299)
T d1ywna1         235 SPYPGVKIDEEFCRRLKEG--------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTF-SELVEHLGNLL  295 (299)
T ss_dssp             CSSTTCCCSHHHHHHHHHT--------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHhcC--------CCCCCCccCCHHHHHHHHHHcCCChhHCcCH-HHHHHHHHHHH
Confidence            6786543322   222221        1223344566889999999999999999999 88888998764


No 29 
>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2e-45  Score=396.38  Aligned_cols=245  Identities=23%  Similarity=0.338  Sum_probs=199.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCC------CchhHHHHHHHHHhcCCCceeeEecccc--CceE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ------GPSEFQQEIDILSKIRHPNLVTLVGACP--EVWT  597 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~------~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~  597 (846)
                      +.|++.+.||+|+||+||+|...  +..||||++......      ..+.|.+|+.+|++++|||||+++++|.  +..|
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            46999999999999999999986  678999999765332      2357899999999999999999999984  4688


Q ss_pred             EEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCC----ceeeecccc
Q 003121          598 LVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANF----VSKLSDFGI  673 (846)
Q Consensus       598 lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~----~vKL~DFGl  673 (846)
                      +|||||+||+|.+++...   .++++..++.++.||+.||.|||+   ++|+||||||+|||++.++    .+||+|||+
T Consensus        90 iv~E~~~gg~L~~~i~~~---~~l~~~~~~~~~~qi~~al~yLH~---~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~  163 (293)
T d1jksa_          90 LILELVAGGELFDFLAEK---ESLTEEEATEFLKQILNGVYYLHS---LQIAHFDLKPENIMLLDRNVPKPRIKIIDFGL  163 (293)
T ss_dssp             EEEECCCSCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSSSSCCEEECCCTT
T ss_pred             EEEEcCCCccccchhccc---cccchhHHHHHHHHHHHHHHhhhh---cceeecccccceEEEecCCCcccceEecchhh
Confidence            999999999999999543   469999999999999999999999   8999999999999998776    599999999


Q ss_pred             ccccccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccc
Q 003121          674 SRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNL  753 (846)
Q Consensus       674 a~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~  753 (846)
                      ++........         ....||+.|+|||++.+..++.++|||||||+||+|+||++||................. 
T Consensus       164 a~~~~~~~~~---------~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~-  233 (293)
T d1jksa_         164 AHKIDFGNEF---------KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY-  233 (293)
T ss_dssp             CEECTTSCBC---------SCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCC-
T ss_pred             hhhcCCCccc---------cccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHHhcCC-
Confidence            9876543211         234699999999999999999999999999999999999999976654432211111100 


Q ss_pred             cCCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          754 LDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       754 ld~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                        ......+...+..+.+||.+||..||.+||++ +++
T Consensus       234 --~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~-~ei  268 (293)
T d1jksa_         234 --EFEDEYFSNTSALAKDFIRRLLVKDPKKRMTI-QDS  268 (293)
T ss_dssp             --CCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCH-HHH
T ss_pred             --CCCchhcCCCCHHHHHHHHHHccCChhHCcCH-HHH
Confidence              00111112345789999999999999999999 544


No 30 
>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00  E-value=3e-45  Score=391.68  Aligned_cols=259  Identities=24%  Similarity=0.399  Sum_probs=201.7

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCc---hhHHHHHHHHHhcCCCceeeEeccccC------c
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGP---SEFQQEIDILSKIRHPNLVTLVGACPE------V  595 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~---~~f~~Ei~iL~~l~HpnIv~l~g~~~~------~  595 (846)
                      .++|.+.+.||+|+||+||+|...  ++.||||+++.....+.   ..|.+|+.+|+.++|||||++++++..      .
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            357999999999999999999976  78899999987654443   458899999999999999999998732      3


Q ss_pred             eEEEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccc
Q 003121          596 WTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISR  675 (846)
Q Consensus       596 ~~lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~  675 (846)
                      .|+|||||+||+|.+++...   .++++..++.|+.||+.||.|||+   +||+||||||+||||+.++.++|+|||+++
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~---~~l~~~~~~~i~~qi~~al~~lH~---~~iiHrDiKP~NIll~~~~~~~l~d~~~~~  159 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTE---GPMTPKRAIEVIADACQALNFSHQ---NGIIHRDVKPANIMISATNAVKVMDFGIAR  159 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTSCEEECCCTTCE
T ss_pred             EEEEEECCCCCEehhhhccc---CCCCHHHHHHHHHHHHHHHHHHHh---CCccCccccCcccccCccccceeehhhhhh
Confidence            78999999999999988543   469999999999999999999999   899999999999999999999999999987


Q ss_pred             ccccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccC
Q 003121          676 FLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLD  755 (846)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld  755 (846)
                      ..........     ......||+.|+|||++.+..|+.++|||||||++|+|+||++||................. ..
T Consensus       160 ~~~~~~~~~~-----~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~-~~  233 (277)
T d1o6ya_         160 AIADSGNSVT-----QTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDP-IP  233 (277)
T ss_dssp             ECC---------------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCC-CC
T ss_pred             hhcccccccc-----ccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCC-CC
Confidence            6544322111     12345699999999999999999999999999999999999999987665443222211111 11


Q ss_pred             CCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHH
Q 003121          756 PLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMR  799 (846)
Q Consensus       756 ~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~  799 (846)
                      +  ...+...++.+.+|+.+||..||.+||+..+++...|..++
T Consensus       234 ~--~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~  275 (277)
T d1o6ya_         234 P--SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH  275 (277)
T ss_dssp             G--GGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             C--chhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHh
Confidence            1  11122345789999999999999999954488877777664


No 31 
>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=7.3e-46  Score=395.75  Aligned_cols=255  Identities=26%  Similarity=0.384  Sum_probs=196.8

Q ss_pred             CCCcccceeeeeCceEEEEEEECC-----eEEEEEEecCCCCCC---chhHHHHHHHHHhcCCCceeeEecccc-CceEE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLRH-----MQVAIKMLHPHSLQG---PSEFQQEIDILSKIRHPNLVTLVGACP-EVWTL  598 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~~-----~~VAIK~l~~~~~~~---~~~f~~Ei~iL~~l~HpnIv~l~g~~~-~~~~l  598 (846)
                      ++|++.+.||+|+||.||+|.+.+     ..||||++.......   .+.|.+|+.+|++++|||||+++|+|. +..++
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~~~l   87 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKM   87 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeecchhe
Confidence            468899999999999999998753     369999987654332   356899999999999999999999995 45789


Q ss_pred             EEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccc
Q 003121          599 VYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLS  678 (846)
Q Consensus       599 VmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~  678 (846)
                      ||||+++|+|.+.+...  ..++++..++.++.||+.||.|||+   ++|+||||||+||||+.++.+||+|||+++.+.
T Consensus        88 v~e~~~~~~l~~~~~~~--~~~l~~~~~~~~~~qi~~gl~ylH~---~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~  162 (273)
T d1u46a_          88 VTELAPLGSLLDRLRKH--QGHFLLGTLSRYAVQVAEGMGYLES---KRFIHRDLAARNLLLATRDLVKIGDFGLMRALP  162 (273)
T ss_dssp             EEECCTTCBHHHHHHHH--GGGSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred             eeeeecCcchhhhhhcc--cCCCCHHHHHHHHHHHHHHHHHhhh---CCEeeeeecHHHhccccccceeeccchhhhhcc
Confidence            99999999999887543  3469999999999999999999999   899999999999999999999999999999775


Q ss_pred             cccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCchHHHHHHhhhhhccccCCC
Q 003121          679 QNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEVQYALDTGKLKNLLDPL  757 (846)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~ellt-G~~pf~~~~~~~~~~~~~~~~~~ld~~  757 (846)
                      ......     .......||+.|+|||++.+..++.++|||||||++|||+| |++||...+.........+.     ..
T Consensus       163 ~~~~~~-----~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~-----~~  232 (273)
T d1u46a_         163 QNDDHY-----VMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKE-----GE  232 (273)
T ss_dssp             C-CCEE-----EC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTS-----CC
T ss_pred             cCCCcc-----eecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhC-----CC
Confidence            443211     11133458899999999999999999999999999999998 89999766554422111111     11


Q ss_pred             CCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHH
Q 003121          758 AGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPM  798 (846)
Q Consensus       758 ~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l  798 (846)
                      ..+.+...+..+.+|+.+||..+|++|||+ .+|.+.|++.
T Consensus       233 ~~~~~~~~~~~l~~li~~cl~~dp~~RPt~-~ei~~~L~~~  272 (273)
T d1u46a_         233 RLPRPEDCPQDIYNVMVQCWAHKPEDRPTF-VALRDFLLEA  272 (273)
T ss_dssp             CCCCCTTCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHH
T ss_pred             CCCCcccccHHHHHHHHHHcCCChhHCcCH-HHHHHHHHhc
Confidence            223344456789999999999999999999 7788887754


No 32 
>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.9e-45  Score=403.93  Aligned_cols=238  Identities=23%  Similarity=0.292  Sum_probs=200.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCC---CCCCchhHHHHHHHHHhcCCCceeeEecccc--CceEEEE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTLVY  600 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~---~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~lVm  600 (846)
                      ++|++.+.||+|+||.||+|...  +..||||++.+.   .......+.+|+.+|++++||||++++++|.  +.+|+||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~   84 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccce
Confidence            47999999999999999999976  678999999754   2234567899999999999999999999984  4689999


Q ss_pred             EecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccc
Q 003121          601 EYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQN  680 (846)
Q Consensus       601 Ey~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~  680 (846)
                      |||+||+|.+++...   ..+++..++.++.||+.||.|||+   +|||||||||+||||+.+|.+||+|||+|+.....
T Consensus        85 ey~~gg~L~~~~~~~---~~~~e~~~~~~~~qil~al~ylH~---~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~  158 (337)
T d1o6la_          85 EYANGGELFFHLSRE---RVFTEERARFYGAEIVSALEYLHS---RDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD  158 (337)
T ss_dssp             ECCTTCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCT
T ss_pred             eccCCCchhhhhhcc---cCCcHHHHHHHHHHHhhhhhhhhh---cCccccccCHHHeEecCCCCEEEeecccccccccC
Confidence            999999999998543   468999999999999999999999   89999999999999999999999999999865432


Q ss_pred             cccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCCCC
Q 003121          681 EISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGD  760 (846)
Q Consensus       681 ~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~~~  760 (846)
                      ...        ....+||+.|+|||++.+..|+.++|||||||++|||+||++||...+........  ...     ...
T Consensus       159 ~~~--------~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i--~~~-----~~~  223 (337)
T d1o6la_         159 GAT--------MKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELI--LME-----EIR  223 (337)
T ss_dssp             TCC--------BCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH--HHC-----CCC
T ss_pred             Ccc--------cccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHH--hcC-----CCC
Confidence            211        12346999999999999999999999999999999999999999776653321111  111     123


Q ss_pred             CChhhHHHHHHHHHHHhccCcCCCCC
Q 003121          761 WPFVQAEQLANLAMRCCEMSRKSRPE  786 (846)
Q Consensus       761 ~p~~~~~~l~~Li~~Cl~~~P~~RPt  786 (846)
                      +|...+..+.+||.+||+.||.+||+
T Consensus       224 ~p~~~s~~~~dli~~~L~~dP~~R~~  249 (337)
T d1o6la_         224 FPRTLSPEAKSLLAGLLKKDPKQRLG  249 (337)
T ss_dssp             CCTTSCHHHHHHHHHHTCSSTTTSTT
T ss_pred             CCccCCHHHHHHHHhhccCCchhhcc
Confidence            45566788999999999999999996


No 33 
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=2.6e-45  Score=399.51  Aligned_cols=234  Identities=25%  Similarity=0.367  Sum_probs=197.6

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCC---CCCCchhHHHHHHHHHhcCCCceeeEeccc--cCceEEEE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVY  600 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~---~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lVm  600 (846)
                      ++|++.+.||+|+||+||+|...  +..||||+++..   .....+.+.+|+.+|+.++|||||++++++  .+..|+||
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            36899999999999999999976  688999998753   233456799999999999999999999998  45689999


Q ss_pred             EecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccc
Q 003121          601 EYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQN  680 (846)
Q Consensus       601 Ey~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~  680 (846)
                      |||+||+|..++...   ..+++..+..++.||+.||.|||+   +|||||||||+||||+.+|.+||+|||+|+.....
T Consensus        84 E~~~gg~l~~~~~~~---~~~~~~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~  157 (316)
T d1fota_          84 DYIEGGELFSLLRKS---QRFPNPVAKFYAAEVCLALEYLHS---KDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV  157 (316)
T ss_dssp             CCCCSCBHHHHHHHT---SSCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC
T ss_pred             eecCCcccccccccc---ccccccHHHHHHHHHHHhhhhhcc---CcEEccccCchheeEcCCCCEEEecCccceEeccc
Confidence            999999999988533   458889999999999999999999   89999999999999999999999999999876532


Q ss_pred             cccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCCCC
Q 003121          681 EISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGD  760 (846)
Q Consensus       681 ~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~~~  760 (846)
                      .           ....||+.|+|||++.+..|+.++|||||||+||+|+||++||...+..........  .     ...
T Consensus       158 ~-----------~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~--~-----~~~  219 (316)
T d1fota_         158 T-----------YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILN--A-----ELR  219 (316)
T ss_dssp             B-----------CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHH--C-----CCC
T ss_pred             c-----------ccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHHHHHHHc--C-----CCC
Confidence            2           234699999999999999999999999999999999999999977655432211111  1     123


Q ss_pred             CChhhHHHHHHHHHHHhccCcCCCC
Q 003121          761 WPFVQAEQLANLAMRCCEMSRKSRP  785 (846)
Q Consensus       761 ~p~~~~~~l~~Li~~Cl~~~P~~RP  785 (846)
                      +|...+..+.+|+.+||..+|.+||
T Consensus       220 ~p~~~s~~~~~li~~~L~~dp~~R~  244 (316)
T d1fota_         220 FPPFFNEDVKDLLSRLITRDLSQRL  244 (316)
T ss_dssp             CCTTSCHHHHHHHHHHTCSCTTTCT
T ss_pred             CCCCCCHHHHHHHHHHhhhCHHhcc
Confidence            4455668899999999999999996


No 34 
>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.6e-44  Score=392.40  Aligned_cols=255  Identities=26%  Similarity=0.389  Sum_probs=202.4

Q ss_pred             cceeeeeCceEEEEEEECC-----eEEEEEEecCCCC-CCchhHHHHHHHHHhcCCCceeeEecccc---CceEEEEEec
Q 003121          533 SLKIGEGGYGSIYKGLLRH-----MQVAIKMLHPHSL-QGPSEFQQEIDILSKIRHPNLVTLVGACP---EVWTLVYEYL  603 (846)
Q Consensus       533 ~~~LG~G~fG~Vy~g~~~~-----~~VAIK~l~~~~~-~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~---~~~~lVmEy~  603 (846)
                      .++||+|+||+||+|.+..     ..||||+++.... ...+.|.+|+++|++++|||||+++|+|.   ...++|||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            4679999999999998753     2589999975322 22457999999999999999999999872   3578999999


Q ss_pred             CCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccccccccc
Q 003121          604 PNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEIS  683 (846)
Q Consensus       604 ~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~~~  683 (846)
                      ++|+|.+++...  ...+++..++.++.|++.||.|||+   ++|+||||||+||||+.++.+||+|||+++........
T Consensus       112 ~~g~l~~~~~~~--~~~~~~~~~~~i~~qia~gL~~lH~---~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~  186 (311)
T d1r0pa_         112 KHGDLRNFIRNE--THNPTVKDLIGFGLQVAKGMKFLAS---KKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFD  186 (311)
T ss_dssp             TTCBHHHHHHCT--TCCCBHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCC
T ss_pred             ecCchhhhhccc--cccchHHHHHHHHHHHHHhhhhhcc---cCcccCCccHHhEeECCCCCEEEecccchhhccccccc
Confidence            999999988533  4567888999999999999999999   89999999999999999999999999999977654322


Q ss_pred             CCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCCCCCCh
Q 003121          684 SNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGDWPF  763 (846)
Q Consensus       684 ~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~~~~p~  763 (846)
                      ...    ......||+.|+|||.+.++.++.++||||||+++|||+||..||...........     .+........|.
T Consensus       187 ~~~----~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~-----~i~~g~~~~~p~  257 (311)
T d1r0pa_         187 SVH----NKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV-----YLLQGRRLLQPE  257 (311)
T ss_dssp             CTT----CTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHH-----HHHTTCCCCCCT
T ss_pred             cce----ecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHH-----HHHcCCCCCCcc
Confidence            211    12345699999999999999999999999999999999997777654322111100     011111223344


Q ss_pred             hhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHhhC
Q 003121          764 VQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRASC  802 (846)
Q Consensus       764 ~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~~~  802 (846)
                      ..++.+.+|+.+||..+|.+||++ .+|++.|+.+....
T Consensus       258 ~~~~~l~~li~~cl~~dP~~RPs~-~ei~~~L~~i~~~~  295 (311)
T d1r0pa_         258 YCPDPLYEVMLKCWHPKAEMRPSF-SELVSRISAIFSTF  295 (311)
T ss_dssp             TCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHHHHTC
T ss_pred             cCcHHHHHHHHHHcCCCHhHCcCH-HHHHHHHHHHHHhh
Confidence            566889999999999999999999 88889999887653


No 35 
>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.2e-45  Score=394.53  Aligned_cols=255  Identities=25%  Similarity=0.410  Sum_probs=205.4

Q ss_pred             CCCcccceeeeeCceEEEEEEECC--e--EEEEEEecCCC-CCCchhHHHHHHHHHhc-CCCceeeEeccc--cCceEEE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLRH--M--QVAIKMLHPHS-LQGPSEFQQEIDILSKI-RHPNLVTLVGAC--PEVWTLV  599 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~~--~--~VAIK~l~~~~-~~~~~~f~~Ei~iL~~l-~HpnIv~l~g~~--~~~~~lV  599 (846)
                      ++|.+.++||+|+||+||+|.+++  .  .||||.+.... ....+.|.+|+.+|+++ +|||||+++|+|  .+..++|
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            467888899999999999998863  2  58889886543 33456799999999999 799999999998  4568999


Q ss_pred             EEecCCCchhhhhccC-------------CCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCce
Q 003121          600 YEYLPNGSLEDRLSCK-------------DNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVS  666 (846)
Q Consensus       600 mEy~~ggsL~~~L~~~-------------~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~v  666 (846)
                      |||+++|+|.++|...             .....+++..+..++.||+.||.|||+   ++|+||||||+|||++.++.+
T Consensus        90 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~---~~iiHrDlkp~NIL~~~~~~~  166 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQ---KQFIHRDLAARNILVGENYVA  166 (309)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECGGGCE
T ss_pred             EEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhc---CCccccccccceEEEcCCCce
Confidence            9999999999998643             234679999999999999999999999   899999999999999999999


Q ss_pred             eeeccccccccccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCC-CCCCCchHHHHHH
Q 003121          667 KLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGR-PALGITKEVQYAL  745 (846)
Q Consensus       667 KL~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~-~pf~~~~~~~~~~  745 (846)
                      ||+|||+++........         ....||..|+|||.+.++.|+.++|||||||++|||+||. +||...+......
T Consensus       167 kl~DfG~a~~~~~~~~~---------~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~  237 (309)
T d1fvra_         167 KIADFGLSRGQEVYVKK---------TMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYE  237 (309)
T ss_dssp             EECCTTCEESSCEECCC-------------CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHH
T ss_pred             EEccccccccccccccc---------cceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence            99999999865443211         1235899999999999999999999999999999999965 6776554433211


Q ss_pred             hhhhhccccCCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHhh
Q 003121          746 DTGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRAS  801 (846)
Q Consensus       746 ~~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~~  801 (846)
                      ..      ........|...++.+.+||.+||+.+|++||++ +++++.|+.+...
T Consensus       238 ~i------~~~~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~-~eil~~L~~i~~~  286 (309)
T d1fvra_         238 KL------PQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSF-AQILVSLNRMLEE  286 (309)
T ss_dssp             HG------GGTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHHHHS
T ss_pred             HH------HhcCCCCCCccCCHHHHHHHHHHcCCChhHCcCH-HHHHHHHHHHHhc
Confidence            11      1112234455667899999999999999999999 8888889887653


No 36 
>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.1e-44  Score=391.68  Aligned_cols=259  Identities=25%  Similarity=0.400  Sum_probs=207.2

Q ss_pred             cCCCcccceeeeeCceEEEEEEECC---------eEEEEEEecCCCCC-CchhHHHHHHHHHhc-CCCceeeEecccc--
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLRH---------MQVAIKMLHPHSLQ-GPSEFQQEIDILSKI-RHPNLVTLVGACP--  593 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~~---------~~VAIK~l~~~~~~-~~~~f~~Ei~iL~~l-~HpnIv~l~g~~~--  593 (846)
                      .++|.+.+.||+|+||.||+|...+         ..||||+++..... ....+.+|+..+.++ +|||||+++|+|.  
T Consensus        12 ~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~   91 (299)
T d1fgka_          12 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   91 (299)
T ss_dssp             GGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccC
Confidence            4578899999999999999998643         36999999765432 235688899999888 8999999999984  


Q ss_pred             CceEEEEEecCCCchhhhhccCC-------------CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEe
Q 003121          594 EVWTLVYEYLPNGSLEDRLSCKD-------------NSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILL  660 (846)
Q Consensus       594 ~~~~lVmEy~~ggsL~~~L~~~~-------------~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl  660 (846)
                      +..++|||||++|+|.++|....             ....+++..++.++.||+.||.|||+   ++||||||||+|||+
T Consensus        92 ~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~---~~ivHrDiKp~NiLl  168 (299)
T d1fgka_          92 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS---KKCIHRDLAARNVLV  168 (299)
T ss_dssp             SSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEE
T ss_pred             CeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhh---CCEEeeeecccceee
Confidence            46899999999999999996442             13468999999999999999999999   899999999999999


Q ss_pred             cCCCceeeeccccccccccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCch
Q 003121          661 DANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITK  739 (846)
Q Consensus       661 ~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~ellt-G~~pf~~~~  739 (846)
                      +.++.+||+|||+++..........      .....||+.|+|||.+.++.|+.++|||||||++|||+| |.+||....
T Consensus       169 ~~~~~~kl~dfg~~~~~~~~~~~~~------~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~  242 (299)
T d1fgka_         169 TEDNVMKIADFGLARDIHHIDYYKK------TTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP  242 (299)
T ss_dssp             CTTCCEEECSTTCCCCGGGCCTTCC------CTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             cCCCCeEeccchhhccccccccccc------cccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCC
Confidence            9999999999999997765432221      133568999999999999999999999999999999998 789997555


Q ss_pred             HHHHHHhhhhhccccCCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHhh
Q 003121          740 EVQYALDTGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRAS  801 (846)
Q Consensus       740 ~~~~~~~~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~~  801 (846)
                      .... ...     +........|...++.+.+|+.+||+.+|.+|||+ .+|++.|+.+.+.
T Consensus       243 ~~~~-~~~-----i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~-~eil~~L~~i~a~  297 (299)
T d1fgka_         243 VEEL-FKL-----LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTF-KQLVEDLDRIVAL  297 (299)
T ss_dssp             HHHH-HHH-----HHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHHHHH
T ss_pred             HHHH-HHH-----HHcCCCCCCCccchHHHHHHHHHHccCCHhHCcCH-HHHHHHHHHHhhc
Confidence            4321 111     11222334455567889999999999999999999 8899999988764


No 37 
>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.5e-44  Score=392.19  Aligned_cols=259  Identities=24%  Similarity=0.366  Sum_probs=208.7

Q ss_pred             hhhcCCCcccceeeeeCceEEEEEEEC-------CeEEEEEEecCCCCC-CchhHHHHHHHHHhcCCCceeeEeccc--c
Q 003121          524 EGATHNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQ-GPSEFQQEIDILSKIRHPNLVTLVGAC--P  593 (846)
Q Consensus       524 ~~~~~~f~~~~~LG~G~fG~Vy~g~~~-------~~~VAIK~l~~~~~~-~~~~f~~Ei~iL~~l~HpnIv~l~g~~--~  593 (846)
                      +...++|...++||+|+||+||+|.+.       ++.||||+++..... ....|.+|+.+|++++|||||+++|+|  .
T Consensus        16 ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~   95 (308)
T d1p4oa_          16 EVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG   95 (308)
T ss_dssp             BCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSS
T ss_pred             eecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecC
Confidence            334568889999999999999999875       357999999754322 224589999999999999999999998  4


Q ss_pred             CceEEEEEecCCCchhhhhccC-------CCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCce
Q 003121          594 EVWTLVYEYLPNGSLEDRLSCK-------DNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVS  666 (846)
Q Consensus       594 ~~~~lVmEy~~ggsL~~~L~~~-------~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~v  666 (846)
                      +..++||||+++|+|.+++...       .....+++..+..++.+++.||.|||.   ++|+||||||+||||+.++++
T Consensus        96 ~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~---~~ivHrDlk~~NiLld~~~~~  172 (308)
T d1p4oa_          96 QPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNA---NKFVHRDLAARNCMVAEDFTV  172 (308)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCSGGGEEECTTCCE
T ss_pred             CceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhh---CCeeeceEcCCceeecCCceE
Confidence            5789999999999999987532       233468999999999999999999999   899999999999999999999


Q ss_pred             eeeccccccccccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhC-CCCCCCchHHHHHH
Q 003121          667 KLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTG-RPALGITKEVQYAL  745 (846)
Q Consensus       667 KL~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG-~~pf~~~~~~~~~~  745 (846)
                      ||+|||+++.+......      .......||+.|+|||.+.++.++.++|||||||+||||+|| .+||..........
T Consensus       173 Kl~DFGla~~~~~~~~~------~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~  246 (308)
T d1p4oa_         173 KIGDFGMTRDIYETDYY------RKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLR  246 (308)
T ss_dssp             EECCTTCCCGGGGGGCE------EGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHH
T ss_pred             EEeecccceeccCCcce------eeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence            99999999876554321      112334589999999999999999999999999999999998 57886654433211


Q ss_pred             hhhhhccccCCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHH
Q 003121          746 DTGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPM  798 (846)
Q Consensus       746 ~~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l  798 (846)
                      .      +.+....+.|...+..+.+|+.+||+.+|.+||++ ++|++.|+..
T Consensus       247 ~------i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~RPs~-~~il~~L~~~  292 (308)
T d1p4oa_         247 F------VMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSF-LEIISSIKEE  292 (308)
T ss_dssp             H------HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHGGG
T ss_pred             H------HHhCCCCCCcccchHHHHHHHHHHcCCChhHCcCH-HHHHHHHHHh
Confidence            1      11122233345566889999999999999999999 7777777654


No 38 
>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00  E-value=1.2e-44  Score=399.64  Aligned_cols=234  Identities=21%  Similarity=0.298  Sum_probs=197.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCC---CCCCchhHHHHHHHHHhcCCCceeeEecccc--CceEEEE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTLVY  600 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~---~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--~~~~lVm  600 (846)
                      ++|++.+.||+|+||.||+|.+.  +..||||++...   .....+.+.+|+.+|+.++|||||++++++.  ...++||
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            37899999999999999999986  688999998643   2233467899999999999999999999984  4688999


Q ss_pred             EecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccc
Q 003121          601 EYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQN  680 (846)
Q Consensus       601 Ey~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~  680 (846)
                      ||+.+|+|..++...   ..+++..+..|+.||+.||.|||+   ++||||||||+||||+.+|.+||+|||+|+.+...
T Consensus       121 e~~~~g~l~~~l~~~---~~l~e~~~~~i~~qi~~aL~yLH~---~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~  194 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRI---GRFSEPHARFYAAQIVLTFEYLHS---LDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR  194 (350)
T ss_dssp             ECCTTCBHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred             ccccccchhhhHhhc---CCCCHHHHHHHHHHHHHHHHHHHh---CCEecCcCCHHHcccCCCCCEEeeeceeeeecccc
Confidence            999999999998543   469999999999999999999999   89999999999999999999999999999876432


Q ss_pred             cccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCCCC
Q 003121          681 EISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGD  760 (846)
Q Consensus       681 ~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~~~  760 (846)
                      .           ....||+.|+|||++.+..|+.++|||||||+||+|+||++||...+..........  .     ...
T Consensus       195 ~-----------~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~--~-----~~~  256 (350)
T d1rdqe_         195 T-----------WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVS--G-----KVR  256 (350)
T ss_dssp             B-----------CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH--C-----CCC
T ss_pred             c-----------ccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhc--C-----CCC
Confidence            1           234599999999999999999999999999999999999999987654432211111  1     112


Q ss_pred             CChhhHHHHHHHHHHHhccCcCCCC
Q 003121          761 WPFVQAEQLANLAMRCCEMSRKSRP  785 (846)
Q Consensus       761 ~p~~~~~~l~~Li~~Cl~~~P~~RP  785 (846)
                      +|...+..+.+|+.+||..||.+|+
T Consensus       257 ~p~~~s~~~~~li~~~L~~dP~kR~  281 (350)
T d1rdqe_         257 FPSHFSSDLKDLLRNLLQVDLTKRF  281 (350)
T ss_dssp             CCTTCCHHHHHHHHHHSCSCTTTCT
T ss_pred             CCccCCHHHHHHHHHHhhhCHHhcc
Confidence            3445568899999999999999995


No 39 
>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=2e-44  Score=393.20  Aligned_cols=243  Identities=25%  Similarity=0.329  Sum_probs=200.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCC---CCCCchhHHHHHHHHH-hcCCCceeeEecccc--CceEEE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEIDILS-KIRHPNLVTLVGACP--EVWTLV  599 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~---~~~~~~~f~~Ei~iL~-~l~HpnIv~l~g~~~--~~~~lV  599 (846)
                      ++|.+.+.||+|+||+||+|...  ++.||||++++.   .....+.+..|+.++. .++|||||++++++.  +..|+|
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            47899999999999999999985  688999999753   2234456777888775 689999999999984  568999


Q ss_pred             EEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccccc
Q 003121          600 YEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQ  679 (846)
Q Consensus       600 mEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~  679 (846)
                      ||||++|+|.+++...   ..+++..+..++.||+.||.|||+   ++|+||||||+|||++.++.+||+|||+++....
T Consensus        82 mEy~~~g~L~~~i~~~---~~~~e~~~~~~~~qi~~al~ylH~---~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~  155 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSC---HKFDLSRATFYAAEIILGLQFLHS---KGIVYRDLKLDNILLDKDGHIKIADFGMCKENML  155 (320)
T ss_dssp             EECCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred             EeecCCCcHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccCcccceeecCCCceeccccchhhhccc
Confidence            9999999999999543   458999999999999999999999   8999999999999999999999999999986543


Q ss_pred             ccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCCC
Q 003121          680 NEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAG  759 (846)
Q Consensus       680 ~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~~  759 (846)
                      ....        .+...||+.|+|||++.+..|+.++|||||||++|+|+||++||............ ...      ..
T Consensus       156 ~~~~--------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i-~~~------~~  220 (320)
T d1xjda_         156 GDAK--------TNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSI-RMD------NP  220 (320)
T ss_dssp             TTCC--------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH-HHC------CC
T ss_pred             cccc--------ccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHH-HcC------CC
Confidence            2211        13456999999999999999999999999999999999999999766543321111 111      12


Q ss_pred             CCChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          760 DWPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       760 ~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                      .+|...+..+.+|+.+||..+|.+||++..++
T Consensus       221 ~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l  252 (320)
T d1xjda_         221 FYPRWLEKEAKDLLVKLFVREPEKRLGVRGDI  252 (320)
T ss_dssp             CCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCG
T ss_pred             CCCccCCHHHHHHHHHhcccCCCCCcCHHHHH
Confidence            34555678899999999999999999984334


No 40 
>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00  E-value=3.8e-44  Score=397.81  Aligned_cols=239  Identities=26%  Similarity=0.358  Sum_probs=192.8

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCC---CCchhHHHH---HHHHHhcCCCceeeEeccc--cCceE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL---QGPSEFQQE---IDILSKIRHPNLVTLVGAC--PEVWT  597 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~---~~~~~f~~E---i~iL~~l~HpnIv~l~g~~--~~~~~  597 (846)
                      ++|++.++||+|+||.||+|...  +..||||++.....   .....+.+|   +.+++.++|||||+++++|  .+..|
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~   83 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS   83 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE
Confidence            57999999999999999999986  67899999864321   222334444   6677778899999999998  45689


Q ss_pred             EEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccc
Q 003121          598 LVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFL  677 (846)
Q Consensus       598 lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~  677 (846)
                      +|||||+||+|.++|...   ..+++..+..|+.||+.||.|||+   ++||||||||+||||+.+|.+||+|||+|+.+
T Consensus        84 ivmE~~~gg~L~~~l~~~---~~~~e~~~~~~~~qi~~aL~ylH~---~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~  157 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQH---GVFSEADMRFYAAEIILGLEHMHN---RFVVYRDLKPANILLDEHGHVRISDLGLACDF  157 (364)
T ss_dssp             EEECCCCSCBHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECSSSCEEECCCTTCEEC
T ss_pred             EEEEecCCCcHHHHHHhc---ccccHHHHHHHHHHHHHHHHHHHH---CCccceeeccceeEEcCCCcEEEeeeceeeec
Confidence            999999999999999543   468899999999999999999999   89999999999999999999999999999876


Q ss_pred             ccccccCCCccccccCCCCCCcccCChhhhcc-CCCCchhhHHHHHHHHHHHHhCCCCCCCchHHH-HHHhhhhhccccC
Q 003121          678 SQNEISSNNTTLCCRTDPKGTFAYMDPEFLAS-GELTPKSDVYSFGIILLRLLTGRPALGITKEVQ-YALDTGKLKNLLD  755 (846)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~-~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~-~~~~~~~~~~~ld  755 (846)
                      .....          ....||+.|+|||++.. ..|+.++|||||||+||||+||++||....... ..+..     ...
T Consensus       158 ~~~~~----------~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~-----~~~  222 (364)
T d1omwa3         158 SKKKP----------HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDR-----MTL  222 (364)
T ss_dssp             SSSCC----------CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHH-----HSS
T ss_pred             CCCcc----------cccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-----hcc
Confidence            54321          23469999999999975 468999999999999999999999997543211 11111     111


Q ss_pred             CCCCCCChhhHHHHHHHHHHHhccCcCCCCCh
Q 003121          756 PLAGDWPFVQAEQLANLAMRCCEMSRKSRPEL  787 (846)
Q Consensus       756 ~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~  787 (846)
                      .....+|...++.+.+||.+||..||.+||+.
T Consensus       223 ~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~  254 (364)
T d1omwa3         223 TMAVELPDSFSPELRSLLEGLLQRDVNRRLGC  254 (364)
T ss_dssp             SCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTT
T ss_pred             cCCCCCCCCCCHHHHHHHHHHcccCHHHhCCC
Confidence            22233444567889999999999999999994


No 41 
>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=100.00  E-value=9.7e-44  Score=379.96  Aligned_cols=243  Identities=27%  Similarity=0.404  Sum_probs=199.0

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCc---------hhHHHHHHHHHhcC-CCceeeEecccc--
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGP---------SEFQQEIDILSKIR-HPNLVTLVGACP--  593 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~---------~~f~~Ei~iL~~l~-HpnIv~l~g~~~--  593 (846)
                      ++|++.+.||+|+||+||+|+..  ++.||||++........         +.+.+|+.+|++++ |||||+++++|.  
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            47899999999999999999884  68899999987543321         24789999999997 999999999984  


Q ss_pred             CceEEEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccc
Q 003121          594 EVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGI  673 (846)
Q Consensus       594 ~~~~lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGl  673 (846)
                      +.+|||||||++|+|.++|..   ..++++..+..++.||+.||.|||+   +||+||||||+||||+.++.+||+|||+
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~---~~~l~e~~~~~~~~qi~~al~~lH~---~~ivHrDlkp~Nill~~~~~~kl~DFG~  156 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTE---KVTLSEKETRKIMRALLEVICALHK---LNIVHRDLKPENILLDDDMNIKLTDFGF  156 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             cceEEEEEcCCCchHHHHHHh---cCCCCHHHHHHHHHHHHHHHHHHHH---cCCcccccccceEEEcCCCCeEEccchh
Confidence            568999999999999999953   3469999999999999999999999   8999999999999999999999999999


Q ss_pred             ccccccccccCCCccccccCCCCCCcccCChhhhcc------CCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHH--H
Q 003121          674 SRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLAS------GELTPKSDVYSFGIILLRLLTGRPALGITKEVQYA--L  745 (846)
Q Consensus       674 a~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~------~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~--~  745 (846)
                      ++.+......         ....||+.|+|||++.+      ..++.++||||+||+||+|+||++||.........  +
T Consensus       157 a~~~~~~~~~---------~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i  227 (277)
T d1phka_         157 SCQLDPGEKL---------REVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMI  227 (277)
T ss_dssp             CEECCTTCCB---------CCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred             eeEccCCCce---------eeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHHHHH
Confidence            9877543211         23469999999999863      34788999999999999999999999876543321  1


Q ss_pred             hhhhhccccCCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          746 DTGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       746 ~~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                      ..+..    .+ ........++.+.+|+.+||+.+|.+||++ +++
T Consensus       228 ~~~~~----~~-~~~~~~~~s~~~~~li~~~L~~~p~~R~s~-~ei  267 (277)
T d1phka_         228 MSGNY----QF-GSPEWDDYSDTVKDLVSRFLVVQPQKRYTA-EEA  267 (277)
T ss_dssp             HHTCC----CC-CTTTGGGSCHHHHHHHHHHCCSSGGGSCCH-HHH
T ss_pred             HhCCC----CC-CCcccccCCHHHHHHHHHHccCChhHCcCH-HHH
Confidence            11111    11 111223456889999999999999999998 444


No 42 
>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.9e-43  Score=381.68  Aligned_cols=244  Identities=26%  Similarity=0.290  Sum_probs=189.0

Q ss_pred             cceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCC-----chhHHHHHHHHHhcCCCceeeEeccc--cCceEEEEEec
Q 003121          533 SLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG-----PSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEYL  603 (846)
Q Consensus       533 ~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~-----~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lVmEy~  603 (846)
                      +++||+|+||+||+|...  ++.||||+++......     ...+.+|+.+|++++|||||+++++|  .+..|+||||+
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            568999999999999875  5789999987643221     34688999999999999999999998  45789999999


Q ss_pred             CCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccccccccc
Q 003121          604 PNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEIS  683 (846)
Q Consensus       604 ~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~~~  683 (846)
                      .++++..++   .....+++..+..++.||+.||.|||+   +||+||||||+|||++.++.+||+|||+++........
T Consensus        83 ~~~~~~~~~---~~~~~l~~~~~~~~~~qil~aL~~lH~---~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~  156 (299)
T d1ua2a_          83 ETDLEVIIK---DNSLVLTPSHIKAYMLMTLQGLEYLHQ---HWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRA  156 (299)
T ss_dssp             SEEHHHHHT---TCCSSCCSSHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCC
T ss_pred             cchHHhhhh---hcccCCCHHHHHHHHHHHHHHHHHhhc---cceecccCCcceEEecCCCccccccCccccccCCCccc
Confidence            998887766   334568889999999999999999999   89999999999999999999999999999876543211


Q ss_pred             CCCccccccCCCCCCcccCChhhhccC-CCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhcc------ccC-
Q 003121          684 SNNTTLCCRTDPKGTFAYMDPEFLASG-ELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKN------LLD-  755 (846)
Q Consensus       684 ~~~~~~~~~~~~~Gt~~Y~APE~l~~~-~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~------~ld-  755 (846)
                      .        ....||+.|+|||++... .|+.++|||||||++|||+||.+||.................      ..+ 
T Consensus       157 ~--------~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~  228 (299)
T d1ua2a_         157 Y--------THQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDM  228 (299)
T ss_dssp             C--------CCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSST
T ss_pred             c--------cceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccch
Confidence            1        234699999999998754 589999999999999999999999977655443221111000      000 


Q ss_pred             ---------CCCCCCC-----hhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          756 ---------PLAGDWP-----FVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       756 ---------~~~~~~p-----~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                               ......+     ...++.+.+|+.+||+.||.+|||+ +++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa-~e~  277 (299)
T d1ua2a_         229 CSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITA-TQA  277 (299)
T ss_dssp             TSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCH-HHH
T ss_pred             hccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCH-HHH
Confidence                     0000111     1235689999999999999999999 444


No 43 
>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.8e-44  Score=390.81  Aligned_cols=261  Identities=22%  Similarity=0.322  Sum_probs=197.3

Q ss_pred             CCcccceeeeeCceEEEEEEECCeEEEEEEecCCCCCCchhHHHHHH--HHHhcCCCceeeEeccccC------ceEEEE
Q 003121          529 NFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEID--ILSKIRHPNLVTLVGACPE------VWTLVY  600 (846)
Q Consensus       529 ~f~~~~~LG~G~fG~Vy~g~~~~~~VAIK~l~~~~~~~~~~f~~Ei~--iL~~l~HpnIv~l~g~~~~------~~~lVm  600 (846)
                      +|.+.+.||+|+||.||+|++++..||||+++...   ...+.+|.+  .+.+++|||||+++|+|.+      ..++||
T Consensus         4 ~~~l~~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~~---~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~   80 (303)
T d1vjya_           4 TIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GEEEEEEEECCSSSEEEEEEETTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             EEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccc---hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEE
Confidence            56677889999999999999999999999986432   334444544  4567899999999999832      478999


Q ss_pred             EecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhc-----CCCceEecccCCCceEecCCCceeeecccccc
Q 003121          601 EYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSC-----KPHSIVHGDLKPANILLDANFVSKLSDFGISR  675 (846)
Q Consensus       601 Ey~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~-----~~~giiHrDLkp~NILl~~~~~vKL~DFGla~  675 (846)
                      |||++|+|.++|..    .+++|..++.++.+++.||.|||..     +.+|||||||||+||||+.++.+||+|||+++
T Consensus        81 Ey~~~g~L~~~l~~----~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~  156 (303)
T d1vjya_          81 DYHEHGSLFDYLNR----YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV  156 (303)
T ss_dssp             ECCTTCBHHHHHHH----CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             ecccCCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccc
Confidence            99999999999953    3589999999999999999999973     23699999999999999999999999999999


Q ss_pred             ccccccccCCCccccccCCCCCCcccCChhhhccCC------CCchhhHHHHHHHHHHHHhCCCCCCCchHH--------
Q 003121          676 FLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGE------LTPKSDVYSFGIILLRLLTGRPALGITKEV--------  741 (846)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~------~~~ksDVwSlGviL~elltG~~pf~~~~~~--------  741 (846)
                      .........    ........||+.|+|||++.+..      ++.++|||||||+||||+||.+||+.....        
T Consensus       157 ~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~  232 (303)
T d1vjya_         157 RHDSATDTI----DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV  232 (303)
T ss_dssp             EEETTTTEE----CC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTS
T ss_pred             cccCCCcce----eccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcc
Confidence            775432111    11123467999999999987542      677899999999999999999887432110        


Q ss_pred             -----HHHHhhhhhccccCCCCC-CC-ChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHhh
Q 003121          742 -----QYALDTGKLKNLLDPLAG-DW-PFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRAS  801 (846)
Q Consensus       742 -----~~~~~~~~~~~~ld~~~~-~~-p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~~  801 (846)
                           ...+........+.|..+ .+ +......+.+|+.+||..+|.+||++ .+|.+.|+.+...
T Consensus       233 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~-~ei~~~L~~i~~~  298 (303)
T d1vjya_         233 PSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTA-LRIKKTLSQLSQQ  298 (303)
T ss_dssp             CSSCCHHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCH-HHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCH-HHHHHHHHHHHHh
Confidence                 000111111111111111 11 12245679999999999999999999 8898999988754


No 44 
>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.3e-43  Score=385.32  Aligned_cols=257  Identities=24%  Similarity=0.397  Sum_probs=207.6

Q ss_pred             hcCCCcccceeeeeCceEEEEEEECC-------eEEEEEEecCCCCC-CchhHHHHHHHHHhc-CCCceeeEecccc--C
Q 003121          526 ATHNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSLQ-GPSEFQQEIDILSKI-RHPNLVTLVGACP--E  594 (846)
Q Consensus       526 ~~~~f~~~~~LG~G~fG~Vy~g~~~~-------~~VAIK~l~~~~~~-~~~~f~~Ei~iL~~l-~HpnIv~l~g~~~--~  594 (846)
                      ..++|.+.++||+|+||.||+|.+.+       +.||||+++..... ....|.+|+.+++++ +|||||+++|+|.  +
T Consensus        21 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~  100 (311)
T d1t46a_          21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (311)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCC
Confidence            34578889999999999999998642       57999999865432 234688999999999 7999999999994  4


Q ss_pred             ceEEEEEecCCCchhhhhccCC---------------CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceE
Q 003121          595 VWTLVYEYLPNGSLEDRLSCKD---------------NSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANIL  659 (846)
Q Consensus       595 ~~~lVmEy~~ggsL~~~L~~~~---------------~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NIL  659 (846)
                      ..++|||||++|+|.+++....               ....+++..+..|+.||+.||.|||+   +++|||||||+|||
T Consensus       101 ~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~---~~ivHrDLKp~NIl  177 (311)
T d1t46a_         101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLAS---KNCIHRDLAARNIL  177 (311)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEE
T ss_pred             EEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHh---CCeeeccccccccc
Confidence            6899999999999999986542               23468999999999999999999999   89999999999999


Q ss_pred             ecCCCceeeeccccccccccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHh-CCCCCCCc
Q 003121          660 LDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGIT  738 (846)
Q Consensus       660 l~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~ellt-G~~pf~~~  738 (846)
                      ++.++.+||+|||+++.........      ..+...||+.|+|||++.++.++.++|||||||++|||+| |.+||...
T Consensus       178 ~~~~~~~ki~DfG~~~~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~  251 (311)
T d1t46a_         178 LTHGRITKICDFGLARDIKNDSNYV------VKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM  251 (311)
T ss_dssp             EETTTEEEECCCGGGSCTTSCTTSE------ECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             ccccCcccccccchheeccCCCcce------EeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999765432211      1234568999999999999999999999999999999999 67777554


Q ss_pred             hHHH---HHHhhhhhccccCCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHh
Q 003121          739 KEVQ---YALDTGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRA  800 (846)
Q Consensus       739 ~~~~---~~~~~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~  800 (846)
                      ....   ..+..+        .....|...+..+.+||.+||+.+|.+||++ .+++++|+.+..
T Consensus       252 ~~~~~~~~~i~~~--------~~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~-~~il~~L~~~i~  307 (311)
T d1t46a_         252 PVDSKFYKMIKEG--------FRMLSPEHAPAEMYDIMKTCWDADPLKRPTF-KQIVQLIEKQIS  307 (311)
T ss_dssp             CSSHHHHHHHHHT--------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcC--------CCCCCcccccHHHHHHHHHHcCCChhHCcCH-HHHHHHHHHhhc
Confidence            3322   222221        1222334456889999999999999999999 788888886544


No 45 
>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.3e-44  Score=388.53  Aligned_cols=248  Identities=20%  Similarity=0.280  Sum_probs=198.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCchhHHHHHHHHHhcCCCceeeEeccc--cCceEEEEEe
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEY  602 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lVmEy  602 (846)
                      .++|.+.+.||+|+||+||+|...  +..||||+++... .+...+.+|+.+|+.++|||||++++++  .+.+|+||||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~-~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~   82 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc-ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEec
Confidence            357999999999999999999986  6789999997643 2244688999999999999999999998  4578999999


Q ss_pred             cCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCC--Cceeeeccccccccccc
Q 003121          603 LPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDAN--FVSKLSDFGISRFLSQN  680 (846)
Q Consensus       603 ~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~--~~vKL~DFGla~~~~~~  680 (846)
                      |+||+|.+++...  ..++++..+..|+.||+.||.|||+   +||+||||||+|||++.+  +.+||+|||+++.....
T Consensus        83 ~~gg~L~~~i~~~--~~~l~e~~~~~i~~qi~~al~yLH~---~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~  157 (321)
T d1tkia_          83 ISGLDIFERINTS--AFELNEREIVSYVHQVCEALQFLHS---HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG  157 (321)
T ss_dssp             CCCCBHHHHHTSS--SCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT
T ss_pred             CCCCcHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHH---cCCCcccccccceeecCCCceEEEEcccchhhccccC
Confidence            9999999999532  3469999999999999999999999   899999999999999854  58999999999876433


Q ss_pred             cccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccccCCCCCC
Q 003121          681 EISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGD  760 (846)
Q Consensus       681 ~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~ld~~~~~  760 (846)
                      ...         ....||+.|+|||.+.+..|+.++|||||||++|+|+||++||..............  ..... ...
T Consensus       158 ~~~---------~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~~--~~~~~-~~~  225 (321)
T d1tkia_         158 DNF---------RLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMN--AEYTF-DEE  225 (321)
T ss_dssp             CEE---------EEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHH--TCCCC-CHH
T ss_pred             Ccc---------cccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHHh--CCCCC-Chh
Confidence            211         123489999999999999999999999999999999999999977655332211111  00000 000


Q ss_pred             CChhhHHHHHHHHHHHhccCcCCCCChHHHHHH
Q 003121          761 WPFVQAEQLANLAMRCCEMSRKSRPELGKDVWR  793 (846)
Q Consensus       761 ~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~  793 (846)
                      .+...++.+.+|+.+||..||.+||++ +++++
T Consensus       226 ~~~~~s~~~~~li~~~L~~dp~~R~s~-~eil~  257 (321)
T d1tkia_         226 AFKEISIEAMDFVDRLLVKERKSRMTA-SEALQ  257 (321)
T ss_dssp             HHTTSCHHHHHHHHTTSCSSGGGSCCH-HHHHH
T ss_pred             hccCCCHHHHHHHHHHccCChhHCcCH-HHHhc
Confidence            011245779999999999999999999 55543


No 46 
>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.9e-44  Score=390.51  Aligned_cols=243  Identities=22%  Similarity=0.367  Sum_probs=192.5

Q ss_pred             CCCcccc-eeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCchhHHHHHHHHHhc-CCCceeeEecccc------CceE
Q 003121          528 HNFDPSL-KIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKI-RHPNLVTLVGACP------EVWT  597 (846)
Q Consensus       528 ~~f~~~~-~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l-~HpnIv~l~g~~~------~~~~  597 (846)
                      ++|.+.. .||+|+||.||+|...  ++.||||+++.     ...+.+|+.++.++ +|||||+++++|.      ..+|
T Consensus        11 ~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~-----~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~~   85 (335)
T d2ozaa1          11 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL   85 (335)
T ss_dssp             GTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC-----cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEEE
Confidence            4788765 5999999999999975  57899999863     35788999997665 8999999999873      3479


Q ss_pred             EEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecC---CCceeeeccccc
Q 003121          598 LVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDA---NFVSKLSDFGIS  674 (846)
Q Consensus       598 lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~---~~~vKL~DFGla  674 (846)
                      +|||||+||+|.++|.... ..++++..+..|+.||+.||.|||+   +||+||||||+|||++.   ++.+||+|||+|
T Consensus        86 ivmEy~~gg~L~~~i~~~~-~~~l~e~~~~~i~~qi~~al~ylH~---~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a  161 (335)
T d2ozaa1          86 IVMECLDGGELFSRIQDRG-DQAFTEREASEIMKSIGEAIQYLHS---INIAHRDVKPENLLYTSKRPNAILKLTDFGFA  161 (335)
T ss_dssp             EEEECCCSEEHHHHHHSCS-CCCEEHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred             EEEECCCCCcHHHHHHhcC-CCCcCHHHHHHHHHHHHHHHHHHHH---cCCcccccccccccccccccccccccccccee
Confidence            9999999999999996432 3569999999999999999999999   89999999999999985   567999999999


Q ss_pred             cccccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhcccc
Q 003121          675 RFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLL  754 (846)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~l  754 (846)
                      +........         ....||+.|+|||++.+..|+.++|||||||+||+|+||++||...........   +...+
T Consensus       162 ~~~~~~~~~---------~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~---~~~~i  229 (335)
T d2ozaa1         162 KETTSHNSL---------TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPG---MKTRI  229 (335)
T ss_dssp             EECCCCCCC---------CCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC-----------CC
T ss_pred             eeccCCCcc---------ccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHH---HHHHH
Confidence            876543211         234699999999999999999999999999999999999999965432211000   00011


Q ss_pred             CCCCCCCC----hhhHHHHHHHHHHHhccCcCCCCChHHHHH
Q 003121          755 DPLAGDWP----FVQAEQLANLAMRCCEMSRKSRPELGKDVW  792 (846)
Q Consensus       755 d~~~~~~p----~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~  792 (846)
                      ......+|    ...++.+.+|+.+||..+|.+||++ .+++
T Consensus       230 ~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~-~eil  270 (335)
T d2ozaa1         230 RMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTI-TEFM  270 (335)
T ss_dssp             CSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCH-HHHH
T ss_pred             hcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCH-HHHH
Confidence            11111122    2346789999999999999999999 5543


No 47 
>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.6e-43  Score=377.44  Aligned_cols=234  Identities=23%  Similarity=0.379  Sum_probs=192.2

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCC------chhHHHHHHHHHhcC--CCceeeEecccc--Cc
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG------PSEFQQEIDILSKIR--HPNLVTLVGACP--EV  595 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~------~~~f~~Ei~iL~~l~--HpnIv~l~g~~~--~~  595 (846)
                      ++|.+.+.||+|+||+||+|...  +..||||++.......      ...+.+|+.+|++++  |||||++++++.  +.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            57999999999999999999986  6789999997643322      234779999999996  899999999984  56


Q ss_pred             eEEEEEecCC-CchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecC-CCceeeecccc
Q 003121          596 WTLVYEYLPN-GSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDA-NFVSKLSDFGI  673 (846)
Q Consensus       596 ~~lVmEy~~g-gsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~-~~~vKL~DFGl  673 (846)
                      .++||||+.+ +++.+++...   ..+++..++.++.||+.||.|||+   ++|+||||||+||||+. ++.+||+|||+
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~---~~l~e~~~~~~~~qi~~al~~lH~---~~iiHrDiKp~NIll~~~~~~vkl~DFG~  157 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITER---GALQEELARSFFWQVLEAVRHCHN---CGVLHRDIKDENILIDLNRGELKLIDFGS  157 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHH---CSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred             EEEEEEeccCcchHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHHH---CCCccccCcccceEEecCCCeEEECcccc
Confidence            8999999976 5777777433   469999999999999999999999   89999999999999985 47999999999


Q ss_pred             ccccccccccCCCccccccCCCCCCcccCChhhhccCCC-CchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhcc
Q 003121          674 SRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGEL-TPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKN  752 (846)
Q Consensus       674 a~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~-~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~  752 (846)
                      |+......          .+...||+.|+|||++.+..+ +.++|||||||+||+|+||++||.......    .+    
T Consensus       158 a~~~~~~~----------~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~i~----~~----  219 (273)
T d1xwsa_         158 GALLKDTV----------YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEII----RG----  219 (273)
T ss_dssp             CEECCSSC----------BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHH----HC----
T ss_pred             ceeccccc----------ccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCchHHh----hc----
Confidence            98654321          134569999999999988765 567899999999999999999997654321    11    


Q ss_pred             ccCCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          753 LLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       753 ~ld~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                           ...++...+..+.+|+.+||..||.+|||+ +++
T Consensus       220 -----~~~~~~~~s~~~~~li~~~L~~dp~~R~s~-~ei  252 (273)
T d1xwsa_         220 -----QVFFRQRVSSECQHLIRWCLALRPSDRPTF-EEI  252 (273)
T ss_dssp             -----CCCCSSCCCHHHHHHHHHHTCSSGGGSCCH-HHH
T ss_pred             -----ccCCCCCCCHHHHHHHHHHccCCHhHCcCH-HHH
Confidence                 112333456889999999999999999999 444


No 48 
>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.7e-43  Score=376.44  Aligned_cols=250  Identities=26%  Similarity=0.349  Sum_probs=192.4

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCC--CCchhHHHHHHHHHhcCCCceeeEeccc--cCceEEEEE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYE  601 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~--~~~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lVmE  601 (846)
                      ++|...++||+|+||+||+|.+.  ++.||||+++....  .....+.+|+.+|++++|||||+++++|  .+..|+|||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            47999999999999999999986  67899999976532  2356799999999999999999999998  457899999


Q ss_pred             ecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccccccc
Q 003121          602 YLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNE  681 (846)
Q Consensus       602 y~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~  681 (846)
                      |+.++.+. ++.. .....+++..+..++.||+.||.|||+   +|||||||||+|||++.++.+||+|||+|+......
T Consensus        82 ~~~~~~~~-~~~~-~~~~~l~e~~~~~~~~qil~~L~yLH~---~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~  156 (298)
T d1gz8a_          82 FLHQDLKK-FMDA-SALTGIPLPLIKSYLFQLLQGLAFCHS---HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV  156 (298)
T ss_dssp             CCSEEHHH-HHHH-TTTTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred             ecCCchhh-hhhh-hcccCCCHHHHHHHHHHHHHHHHHhhc---CCEEccccCchheeecccCcceeccCCcceeccCCc
Confidence            99765444 4432 234569999999999999999999999   899999999999999999999999999998764432


Q ss_pred             ccCCCccccccCCCCCCcccCChhhhccCC-CCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhcc--------
Q 003121          682 ISSNNTTLCCRTDPKGTFAYMDPEFLASGE-LTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKN--------  752 (846)
Q Consensus       682 ~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~-~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~--------  752 (846)
                      ..        .....||+.|+|||.+.... ++.++|||||||++|+|++|++||...+.............        
T Consensus       157 ~~--------~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~  228 (298)
T d1gz8a_         157 RT--------YTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWP  228 (298)
T ss_dssp             BC--------TTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTST
T ss_pred             cc--------ceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhcc
Confidence            11        12345999999999987765 57899999999999999999999976654332211100000        


Q ss_pred             ---ccCCCCCCC-----------ChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          753 ---LLDPLAGDW-----------PFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       753 ---~ld~~~~~~-----------p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                         ........+           ....+..+.+|+.+||..||.+|||+ +++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~-~el  280 (298)
T d1gz8a_         229 GVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISA-KAA  280 (298)
T ss_dssp             TGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCH-HHH
T ss_pred             ccccccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCH-HHH
Confidence               000000000           01224678999999999999999999 554


No 49 
>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.3e-42  Score=375.66  Aligned_cols=250  Identities=26%  Similarity=0.343  Sum_probs=195.9

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC---CeEEEEEEecCCCC--CCchhHHHHHHHHHhc---CCCceeeEecccc-----
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLR---HMQVAIKMLHPHSL--QGPSEFQQEIDILSKI---RHPNLVTLVGACP-----  593 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~---~~~VAIK~l~~~~~--~~~~~f~~Ei~iL~~l---~HpnIv~l~g~~~-----  593 (846)
                      .++|++.++||+|+||+||+|.+.   ++.||||+++....  .....+.+|+.+|+.|   +||||++++++|.     
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            458999999999999999999874   45699999875432  2344678899888776   7999999999872     


Q ss_pred             --CceEEEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecc
Q 003121          594 --EVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDF  671 (846)
Q Consensus       594 --~~~~lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DF  671 (846)
                        ...+++|||+.+|++.....  .....+++..+..++.||+.||.|||+   ++|+||||||+|||++.++.+||+||
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~qi~~aL~yLH~---~~ivHrDiKp~NILi~~~~~~kl~df  160 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDK--VPEPGVPTETIKDMMFQLLRGLDFLHS---HRVVHRDLKPQNILVTSSGQIKLADF  160 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHH--SCTTCSCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECSC
T ss_pred             cCceEEEEEEeccCCchhhhhh--ccCCCCCHHHHHHHHHHHHHHHHHHHh---CCEEecCCCccEEEEcCCCCeeecch
Confidence              25789999999887765443  334568999999999999999999999   89999999999999999999999999


Q ss_pred             ccccccccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhh-
Q 003121          672 GISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKL-  750 (846)
Q Consensus       672 Gla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~-  750 (846)
                      |+++.......         .....||+.|+|||++.+..|+.++|||||||++|||+||++||............-.. 
T Consensus       161 g~~~~~~~~~~---------~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~  231 (305)
T d1blxa_         161 GLARIYSFQMA---------LTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVI  231 (305)
T ss_dssp             CSCCCCCGGGG---------GCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHH
T ss_pred             hhhhhhccccc---------CCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhh
Confidence            99886543321         13456999999999999999999999999999999999999999766543321111000 


Q ss_pred             -------------------ccccCCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          751 -------------------KNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       751 -------------------~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                                         ..........++...++.+.+|+.+||+.||.+|||+ +++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa-~e~  290 (305)
T d1blxa_         232 GLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISA-YSA  290 (305)
T ss_dssp             CCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCH-HHH
T ss_pred             CCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCH-HHH
Confidence                               0000001112233446789999999999999999999 444


No 50 
>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}
Probab=100.00  E-value=2.5e-42  Score=370.42  Aligned_cols=249  Identities=23%  Similarity=0.300  Sum_probs=194.5

Q ss_pred             CCCcccceeeeeCceEEEEEEEC-CeEEEEEEecCCCC--CCchhHHHHHHHHHhcCCCceeeEeccc--cCceEEEEEe
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSL--QGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEY  602 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~-~~~VAIK~l~~~~~--~~~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lVmEy  602 (846)
                      ++|...++||+|+||+||+|.+. ++.||||++.....  .....+.+|+.+|++++|||||+++++|  .+..+++|||
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            47899999999999999999887 57899999976532  2246799999999999999999999998  4578999999


Q ss_pred             cCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccccccccccc
Q 003121          603 LPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEI  682 (846)
Q Consensus       603 ~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~~  682 (846)
                      +.++++..+..   ....+++..+..|+.||+.||.|||+   ++||||||||+||||+.++.+||+|||++........
T Consensus        82 ~~~~~~~~~~~---~~~~l~~~~~~~i~~qi~~~L~~LH~---~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~  155 (286)
T d1ob3a_          82 LDQDLKKLLDV---CEGGLESVTAKSFLLQLLNGIAYCHD---RRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR  155 (286)
T ss_dssp             CSEEHHHHHHT---STTCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---
T ss_pred             ehhhhHHHHHh---hcCCcchhhhHHHHHHHHHHHHHhcc---CcEEecCCCCceeeEcCCCCEEecccccceecccCcc
Confidence            98877777663   34679999999999999999999999   8999999999999999999999999999987654321


Q ss_pred             cCCCccccccCCCCCCcccCChhhhccC-CCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhh-----------
Q 003121          683 SSNNTTLCCRTDPKGTFAYMDPEFLASG-ELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKL-----------  750 (846)
Q Consensus       683 ~~~~~~~~~~~~~~Gt~~Y~APE~l~~~-~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~-----------  750 (846)
                      .        .....|++.|+|||.+.+. .++.++|||||||++|||++|++||...+...........           
T Consensus       156 ~--------~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~  227 (286)
T d1ob3a_         156 K--------YTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPN  227 (286)
T ss_dssp             --------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTT
T ss_pred             c--------cceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccc
Confidence            1        1233589999999999764 5799999999999999999999999765543321111000           


Q ss_pred             ----ccc---cCC----CCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          751 ----KNL---LDP----LAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       751 ----~~~---ld~----~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                          ...   ...    ....++...+..+.+|+.+||+.||++|||+ +++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~-~el  278 (286)
T d1ob3a_         228 VTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITA-KQA  278 (286)
T ss_dssp             GGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCH-HHH
T ss_pred             hhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCH-HHH
Confidence                000   000    0011122345789999999999999999999 554


No 51 
>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.5e-41  Score=366.83  Aligned_cols=254  Identities=25%  Similarity=0.367  Sum_probs=192.3

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCC--CCchhHHHHHHHHHhcCCCceeeEecccc---------
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSL--QGPSEFQQEIDILSKIRHPNLVTLVGACP---------  593 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~--~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~---------  593 (846)
                      .++|.+.++||+|+||+||+|.+.  ++.||||++.....  .....+.+|+.+|++++||||++++++|.         
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            358999999999999999999986  67899999876533  23467899999999999999999998872         


Q ss_pred             -CceEEEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccc
Q 003121          594 -EVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFG  672 (846)
Q Consensus       594 -~~~~lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFG  672 (846)
                       ...++||||+.++++....   .....+++..+..++.||+.||.|||+   +||+||||||+||||+.++.+||+|||
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~---~~~~~~~~~~~~~i~~qil~~l~~lH~---~~ivHrDlKp~NILl~~~~~~kl~dfg  162 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLS---NVLVKFTLSEIKRVMQMLLNGLYYIHR---NKILHRDMKAANVLITRDGVLKLADFG  162 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHT---CTTCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTSCEEECCCT
T ss_pred             CceEEEEEeccCCCccchhh---hcccccccHHHHHHHHHHHHHHHHhcc---CCEEecCcCchheeecCCCcEEeeecc
Confidence             3478999999888776554   334568999999999999999999999   899999999999999999999999999


Q ss_pred             cccccccccccCCCccccccCCCCCCcccCChhhhccC-CCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhc
Q 003121          673 ISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASG-ELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLK  751 (846)
Q Consensus       673 la~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~-~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~  751 (846)
                      +++.+..........    .....||+.|+|||++.+. .|+.++|||||||++|||+||++||................
T Consensus       163 ~~~~~~~~~~~~~~~----~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~  238 (318)
T d3blha1         163 LARAFSLAKNSQPNR----YTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLC  238 (318)
T ss_dssp             TCEECCC-----CCC----CCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHH
T ss_pred             eeeeccccccccccc----ccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhc
Confidence            998765443221111    1335699999999999765 68999999999999999999999997655433322111111


Q ss_pred             cccCC-----------------CCC-CCC-------hhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          752 NLLDP-----------------LAG-DWP-------FVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       752 ~~ld~-----------------~~~-~~p-------~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                      ....+                 ... ..+       ......+.+|+.+||+.||++|||+ +++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa-~el  302 (318)
T d3blha1         239 GSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDS-DDA  302 (318)
T ss_dssp             CCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCH-HHH
T ss_pred             CCCChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCH-HHH
Confidence            10000                 000 000       0113467899999999999999999 444


No 52 
>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=100.00  E-value=1.1e-41  Score=367.72  Aligned_cols=264  Identities=20%  Similarity=0.258  Sum_probs=198.5

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCchhHHHHHHHHHhcCCCceeeEeccc---cCceEEEEEe
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC---PEVWTLVYEY  602 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~---~~~~~lVmEy  602 (846)
                      ++|.+.+.||+|+||+||+|.+.  ++.||||++.....  ...+..|+++++.++|+|++.+++.|   .+..++||||
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~   84 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   84 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEE
Confidence            46999999999999999999976  67899999876532  34689999999999888777665554   4568899999


Q ss_pred             cCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEec---CCCceeeecccccccccc
Q 003121          603 LPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLD---ANFVSKLSDFGISRFLSQ  679 (846)
Q Consensus       603 ~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~---~~~~vKL~DFGla~~~~~  679 (846)
                      +. |+|.+.+..  ....+++..++.++.|++.||.|||+   ++||||||||+|||++   .+..+||+|||+|+.+..
T Consensus        85 ~~-~~l~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~---~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~  158 (299)
T d1ckia_          85 LG-PSLEDLFNF--CSRKFSLKTVLLLADQMISRIEYIHS---KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD  158 (299)
T ss_dssp             CC-CBHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBC
T ss_pred             cC-Cchhhhhhh--ccCCCcHHHHHHHHHHHHHHHHHHHH---CCeeeccCCHhhccccccCCCceeeeeccCcceeccc
Confidence            94 566665532  23569999999999999999999999   8999999999999985   456799999999998765


Q ss_pred             ccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHh--hhhhccccCCC
Q 003121          680 NEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALD--TGKLKNLLDPL  757 (846)
Q Consensus       680 ~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~--~~~~~~~ld~~  757 (846)
                      ....... .........||+.|+|||++.+..++.++|||||||++|||+||++||...........  .........+ 
T Consensus       159 ~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~-  236 (299)
T d1ckia_         159 ARTHQHI-PYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP-  236 (299)
T ss_dssp             TTTCCBC-CCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSC-
T ss_pred             cccccce-eccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCC-
Confidence            4322111 11122456799999999999999999999999999999999999999965433221111  0000000001 


Q ss_pred             CCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHhhC
Q 003121          758 AGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRASC  802 (846)
Q Consensus       758 ~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~~~  802 (846)
                      ....+...++.+.+|+.+||..+|.+||++ +.+.+.|+.+....
T Consensus       237 ~~~~~~~~p~~~~~li~~cl~~~p~~RP~~-~~i~~~l~~~~~~~  280 (299)
T d1ckia_         237 IEVLCKGYPSEFATYLNFCRSLRFDDKPDY-SYLRQLFRNLFHRQ  280 (299)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHSCTTCCCCH-HHHHHHHHHHHHHH
T ss_pred             hhHhccCCCHHHHHHHHHHccCChhHCcCH-HHHHHHHHHHHHHc
Confidence            001112334789999999999999999999 77888888765443


No 53 
>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.1e-41  Score=372.47  Aligned_cols=247  Identities=26%  Similarity=0.324  Sum_probs=190.9

Q ss_pred             CCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCchhHHHHHHHHHhcCCCceeeEecccc--------CceEE
Q 003121          529 NFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACP--------EVWTL  598 (846)
Q Consensus       529 ~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--------~~~~l  598 (846)
                      +|...++||+|+||+||+|++.  ++.||||++.....    .+.+|+.+|++++||||++++++|.        ...+|
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~----~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS----SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch----HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEE
Confidence            5888889999999999999986  67899999976432    3458999999999999999999872        13689


Q ss_pred             EEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCC-ceeeecccccccc
Q 003121          599 VYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANF-VSKLSDFGISRFL  677 (846)
Q Consensus       599 VmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~-~vKL~DFGla~~~  677 (846)
                      |||||++|.+..+.........+++..+..|+.||+.||.|||+   +||+||||||+||||+.++ .+||+|||+++.+
T Consensus        97 v~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~---~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~  173 (350)
T d1q5ka_          97 VLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQL  173 (350)
T ss_dssp             EEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECTTTCCEEECCCTTCEEC
T ss_pred             EEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHh---cCCcccCCCcceEEEecCCCceeEecccchhhc
Confidence            99999877555544333445679999999999999999999999   8999999999999999765 8999999999876


Q ss_pred             ccccccCCCccccccCCCCCCcccCChhhhcc-CCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhh-------
Q 003121          678 SQNEISSNNTTLCCRTDPKGTFAYMDPEFLAS-GELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGK-------  749 (846)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~-~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~-------  749 (846)
                      ......         ....||+.|+|||.+.+ ..|+.++|||||||++|||++|++||............-+       
T Consensus       174 ~~~~~~---------~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~  244 (350)
T d1q5ka_         174 VRGEPN---------VSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTR  244 (350)
T ss_dssp             CTTSCC---------CSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCH
T ss_pred             cCCccc---------ccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChH
Confidence            543211         23469999999998875 4789999999999999999999999976654332211100       


Q ss_pred             ---------hccccCC------CCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHH
Q 003121          750 ---------LKNLLDP------LAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVW  792 (846)
Q Consensus       750 ---------~~~~ld~------~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~  792 (846)
                               .....-+      .........++.+.+|+.+||..||.+|||+ .+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta-~e~L  301 (350)
T d1q5ka_         245 EQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTP-LEAC  301 (350)
T ss_dssp             HHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCH-HHHH
T ss_pred             HhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCH-HHHh
Confidence                     0000000      0011122346789999999999999999999 5553


No 54 
>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=100.00  E-value=1.4e-40  Score=358.40  Aligned_cols=265  Identities=20%  Similarity=0.249  Sum_probs=205.4

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCchhHHHHHHHHHhcCC-CceeeEeccc--cCceEEEEE
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRH-PNLVTLVGAC--PEVWTLVYE  601 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~H-pnIv~l~g~~--~~~~~lVmE  601 (846)
                      .++|.+.++||+|+||+||+|++.  ++.||||++....  ....+.+|+++++.|.| +|++.+++++  ....++|||
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme   81 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID   81 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEE
Confidence            357999999999999999999976  6889999986543  34568899999999975 8999988877  456889999


Q ss_pred             ecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecC-----CCceeeeccccccc
Q 003121          602 YLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDA-----NFVSKLSDFGISRF  676 (846)
Q Consensus       602 y~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~-----~~~vKL~DFGla~~  676 (846)
                      |+ +|+|.+++...  ...+++..+..++.|++.||.|||+   +|||||||||+||||+.     ++.+||+|||+|+.
T Consensus        82 ~~-~~~l~~~~~~~--~~~~~~~~~~~i~~q~~~~l~~lH~---~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~  155 (293)
T d1csna_          82 LL-GPSLEDLLDLC--GRKFSVKTVAMAAKQMLARVQSIHE---KSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF  155 (293)
T ss_dssp             CC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHT---TTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEE
T ss_pred             ec-CCCHHHHHHhh--ccchhhHHHHHHHHHHHHHHHHHHH---CCceeccCCccceeecCcccccCCceEEcccceeEE
Confidence            99 78999888543  3468999999999999999999999   89999999999999974     57899999999998


Q ss_pred             cccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchH---HHH--HHhhhhhc
Q 003121          677 LSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKE---VQY--ALDTGKLK  751 (846)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~---~~~--~~~~~~~~  751 (846)
                      +........ ..........||+.|+|||++.+..++.++|||||||++|||+||+.||.....   ...  .+...+..
T Consensus       156 ~~~~~~~~~-~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~  234 (293)
T d1csna_         156 YRDPVTKQH-IPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS  234 (293)
T ss_dssp             SBCTTTCCB-CCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHH
T ss_pred             cccCccccc-eeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCC
Confidence            754432211 111122456799999999999999999999999999999999999999964322   111  11111111


Q ss_pred             cccCCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHHHHHHHHHhhCCCC
Q 003121          752 NLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRASCGGS  805 (846)
Q Consensus       752 ~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~~~L~~l~~~~~~~  805 (846)
                      ........    ..++.+.+++..|+..+|.+||++ +.+.+.|+.+....+..
T Consensus       235 ~~~~~l~~----~~p~~l~~ii~~~~~~~~~~rP~y-~~l~~~l~~~~~~~~~~  283 (293)
T d1csna_         235 TPLRELCA----GFPEEFYKYMHYARNLAFDATPDY-DYLQGLFSKVLERLNTT  283 (293)
T ss_dssp             SCHHHHTT----TSCHHHHHHHHHHHHCCTTCCCCH-HHHHHHHHHHHHHTTCC
T ss_pred             CChHHhcC----CCCHHHHHHHHHHhcCCcccCcCH-HHHHHHHHHHHHHcCCC
Confidence            11111112    234789999999999999999998 77888888776554433


No 55 
>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=3.9e-41  Score=370.95  Aligned_cols=252  Identities=24%  Similarity=0.296  Sum_probs=191.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCC-CchhHHHHHHHHHhcCCCceeeEeccccC------ceE
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ-GPSEFQQEIDILSKIRHPNLVTLVGACPE------VWT  597 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~-~~~~f~~Ei~iL~~l~HpnIv~l~g~~~~------~~~  597 (846)
                      +.+|...++||+|+||+||+|...  ++.||||++...... ..+.+.+|+.+|++++||||+++++++..      ..+
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            357999999999999999999876  688999999764322 23468899999999999999999998732      235


Q ss_pred             EEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccc
Q 003121          598 LVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFL  677 (846)
Q Consensus       598 lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~  677 (846)
                      ++++|+.+|+|.+++..    ..+++..++.++.||+.||.|||+   +|||||||||+||||+.++.+||+|||+++..
T Consensus        87 ~l~~~~~~g~L~~~l~~----~~l~~~~i~~i~~qil~al~yLH~---~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~  159 (345)
T d1pmea_          87 YLVTHLMGADLYKLLKT----QHLSNDHICYFLYQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLARVA  159 (345)
T ss_dssp             EEEEECCCEEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEeecCCchhhhhhc----CCCCHHHHHHHHHHHHHHHHHHHH---CCCcCCCCCcceEEECCCCCEEEcccCceeec
Confidence            56677789999999853    358999999999999999999999   89999999999999999999999999999876


Q ss_pred             ccccccCCCccccccCCCCCCcccCChhhhcc-CCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhc-----
Q 003121          678 SQNEISSNNTTLCCRTDPKGTFAYMDPEFLAS-GELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLK-----  751 (846)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~-~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~-----  751 (846)
                      .........     .....||+.|+|||++.. ..++.++||||+||++|+|+||++||................     
T Consensus       160 ~~~~~~~~~-----~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~  234 (345)
T d1pmea_         160 DPDHDHTGF-----LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQ  234 (345)
T ss_dssp             CGGGCBCCT-----TCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCH
T ss_pred             cCCCcccee-----eccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCCh
Confidence            554322211     234579999999999854 567899999999999999999999997654322211110000     


Q ss_pred             --------------cccCCCCCCCC-----hhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          752 --------------NLLDPLAGDWP-----FVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       752 --------------~~ld~~~~~~p-----~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                                    ....+.....+     ...+..+.+|+.+||..||.+||++ +++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta-~e~  292 (345)
T d1pmea_         235 EDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEV-EQA  292 (345)
T ss_dssp             HHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCH-HHH
T ss_pred             hhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCH-HHH
Confidence                          00001111111     1224578999999999999999999 555


No 56 
>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=7.4e-41  Score=368.75  Aligned_cols=246  Identities=20%  Similarity=0.279  Sum_probs=188.6

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCC--chhHHHHHHHHHhcCCCceeeEeccccC--------
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG--PSEFQQEIDILSKIRHPNLVTLVGACPE--------  594 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~--~~~f~~Ei~iL~~l~HpnIv~l~g~~~~--------  594 (846)
                      .++|...++||+|+||+||+|...  ++.||||+++......  .+.+.+|+.+|+.++|||||+++++|..        
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            468999999999999999999986  6889999997643321  3468899999999999999999998832        


Q ss_pred             ceEEEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeeccccc
Q 003121          595 VWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGIS  674 (846)
Q Consensus       595 ~~~lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla  674 (846)
                      .+|+||||| +++|..++.    ...+++..++.++.||+.||.|||+   +||+||||||+|||++.++.+||+|||+|
T Consensus        97 ~~~lv~e~~-~~~l~~~~~----~~~l~~~~~~~~~~qi~~aL~~LH~---~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a  168 (346)
T d1cm8a_          97 DFYLVMPFM-GTDLGKLMK----HEKLGEDRIQFLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLA  168 (346)
T ss_dssp             CCEEEEECC-SEEHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred             eEEEEEecc-cccHHHHHH----hccccHHHHHHHHHHHHHHHHHHHh---CCCcccccCcchhhcccccccccccccce
Confidence            468999999 667777663    2459999999999999999999999   89999999999999999999999999999


Q ss_pred             cccccccccCCCccccccCCCCCCcccCChhhhccC-CCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhh---
Q 003121          675 RFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASG-ELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKL---  750 (846)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~-~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~---  750 (846)
                      +......           +...||+.|+|||++.+. .++.++|||||||++|+|++|++||...+...........   
T Consensus       169 ~~~~~~~-----------~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~  237 (346)
T d1cm8a_         169 RQADSEM-----------TGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGT  237 (346)
T ss_dssp             EECCSSC-----------CSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCC
T ss_pred             eccCCcc-----------ccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCC
Confidence            8764322           234699999999998764 5789999999999999999999999766543321111000   


Q ss_pred             -----------------ccccC----CCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHHH
Q 003121          751 -----------------KNLLD----PLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVW  792 (846)
Q Consensus       751 -----------------~~~ld----~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v~  792 (846)
                                       ...+.    ..........+..+.+|+.+||..||.+|||+ ++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta-~eiL  299 (346)
T d1cm8a_         238 PPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTA-GEAL  299 (346)
T ss_dssp             CCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCH-HHHH
T ss_pred             CcHHHHhhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCH-HHHh
Confidence                             00000    00011122345778999999999999999999 5553


No 57 
>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}
Probab=100.00  E-value=7.7e-40  Score=357.80  Aligned_cols=243  Identities=19%  Similarity=0.330  Sum_probs=191.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCchhHHHHHHHHHhcC-CCceeeEecccc----CceEEE
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIR-HPNLVTLVGACP----EVWTLV  599 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~-HpnIv~l~g~~~----~~~~lV  599 (846)
                      .++|.+.++||+|+||+||+|+..  ++.||||+++..   ....+.+|+.+|+++. ||||++++++|.    ...++|
T Consensus        34 ~d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~---~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v  110 (328)
T d3bqca1          34 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  110 (328)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEE
T ss_pred             CcCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH---HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEE
Confidence            457999999999999999999986  688999998753   3567899999999995 999999999873    358899


Q ss_pred             EEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCC-Cceeeeccccccccc
Q 003121          600 YEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDAN-FVSKLSDFGISRFLS  678 (846)
Q Consensus       600 mEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~-~~vKL~DFGla~~~~  678 (846)
                      ||||.+|+|..+.      ..+++..+..++.||+.||.|||+   +||+||||||+||||+.+ +.+||+|||+|+...
T Consensus       111 ~e~~~~~~L~~~~------~~l~e~~i~~i~~qil~aL~~LH~---~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~  181 (328)
T d3bqca1         111 FEHVNNTDFKQLY------QTLTDYDIRFYMYEILKALDYCHS---MGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH  181 (328)
T ss_dssp             EECCCSCBGGGTT------TSCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEEETTTTEEEECCGGGCEECC
T ss_pred             EeecCCCcHHHHh------cCCCHHHHHHHHHHHHHHHHHHhh---cccccccccccceEEcCCCCeeeecccccceecc
Confidence            9999999998764      358999999999999999999999   899999999999999865 469999999998765


Q ss_pred             cccccCCCccccccCCCCCCcccCChhhhccC-CCCchhhHHHHHHHHHHHHhCCCCCCCchHHH-HHHhh---------
Q 003121          679 QNEISSNNTTLCCRTDPKGTFAYMDPEFLASG-ELTPKSDVYSFGIILLRLLTGRPALGITKEVQ-YALDT---------  747 (846)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~-~~~~ksDVwSlGviL~elltG~~pf~~~~~~~-~~~~~---------  747 (846)
                      .....         ....||+.|+|||.+.+. .++.++||||+||++|+|++|+.||....... .....         
T Consensus       182 ~~~~~---------~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~  252 (328)
T d3bqca1         182 PGQEY---------NVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDL  252 (328)
T ss_dssp             TTCCC---------CSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHH
T ss_pred             CCCcc---------cccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchh
Confidence            43211         234589999999998765 57999999999999999999999996433211 00000         


Q ss_pred             ------h------hhccccCC---------CCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          748 ------G------KLKNLLDP---------LAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       748 ------~------~~~~~ld~---------~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                            .      .+......         .........++.+.+|+.+||..||.+|||+ +++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta-~e~  316 (328)
T d3bqca1         253 YDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTA-REA  316 (328)
T ss_dssp             HHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCH-HHH
T ss_pred             hhhhhhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCH-HHH
Confidence                  0      00000000         0011112345789999999999999999999 444


No 58 
>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=7.4e-40  Score=351.31  Aligned_cols=249  Identities=24%  Similarity=0.262  Sum_probs=194.7

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCC--chhHHHHHHHHHhcCCCceeeEeccc--cCceEEEEE
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQG--PSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYE  601 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~--~~~f~~Ei~iL~~l~HpnIv~l~g~~--~~~~~lVmE  601 (846)
                      ++|+..++||+|+||+||+|++.  +..||||+++......  ...+.+|+.+|+.++||||++++++|  .+..++||+
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            47899999999999999999986  5779999997654322  45789999999999999999999998  456889999


Q ss_pred             ecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccccccccc
Q 003121          602 YLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNE  681 (846)
Q Consensus       602 y~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~~~~~~~  681 (846)
                      |+.+++|..++.   ....+++..++.++.|++.||.|||.   ++|+||||||+|||++.++.+||+|||+++......
T Consensus        82 ~~~~~~l~~~~~---~~~~~~~~~~~~~~~q~~~aL~~lH~---~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~  155 (292)
T d1unla_          82 FCDQDLKKYFDS---CNGDLDPEIVKSFLFQLLKGLGFCHS---RNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV  155 (292)
T ss_dssp             CCSEEHHHHHHH---TTTCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCC
T ss_pred             eccccccccccc---cccccchhHHHHHHHHHHHHHHHhhc---CCEeeecccCcccccccCCceeeeecchhhcccCCC
Confidence            999999988874   33568899999999999999999999   899999999999999999999999999998765433


Q ss_pred             ccCCCccccccCCCCCCcccCChhhhccCC-CCchhhHHHHHHHHHHHHhCCCCCCCc-hHHHHHHhhhhhcc-------
Q 003121          682 ISSNNTTLCCRTDPKGTFAYMDPEFLASGE-LTPKSDVYSFGIILLRLLTGRPALGIT-KEVQYALDTGKLKN-------  752 (846)
Q Consensus       682 ~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~-~~~ksDVwSlGviL~elltG~~pf~~~-~~~~~~~~~~~~~~-------  752 (846)
                      ...        ....+++.|+|||.+.... ++.++|||||||++|||++|+.||... +.............       
T Consensus       156 ~~~--------~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (292)
T d1unla_         156 RCY--------SAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQW  227 (292)
T ss_dssp             SCC--------CSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTC
T ss_pred             ccc--------eeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhh
Confidence            211        2234789999999987665 689999999999999999999886333 22211111000000       


Q ss_pred             -----cc----------CCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          753 -----LL----------DPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       753 -----~l----------d~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                           ..          .......+...+..+.+|+.+||+.||.+|||+ +++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa-~e~  280 (292)
T d1unla_         228 PSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISA-EEA  280 (292)
T ss_dssp             TTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCH-HHH
T ss_pred             hhhhhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCH-HHH
Confidence                 00          001111223345689999999999999999999 444


No 59 
>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=8.3e-41  Score=364.82  Aligned_cols=242  Identities=28%  Similarity=0.374  Sum_probs=193.5

Q ss_pred             CCCcccceeeeeCceEEEEEEE-----CCeEEEEEEecCCC----CCCchhHHHHHHHHHhcCC-CceeeEeccc--cCc
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLL-----RHMQVAIKMLHPHS----LQGPSEFQQEIDILSKIRH-PNLVTLVGAC--PEV  595 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~-----~~~~VAIK~l~~~~----~~~~~~f~~Ei~iL~~l~H-pnIv~l~g~~--~~~  595 (846)
                      ++|++.++||+|+||+||+|..     .++.||||+++...    ....+.+.+|+.+|++++| |||+++++++  ...
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            4699999999999999999986     25789999987542    2234678899999999976 8999999988  456


Q ss_pred             eEEEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccc
Q 003121          596 WTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISR  675 (846)
Q Consensus       596 ~~lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~  675 (846)
                      .++||||+.+|+|.+++...   ..+++..+..++.||+.||.|||+   ++|+||||||+||||+.+|.+||+|||+++
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~---~~~~e~~~~~~~~Qi~~al~~lH~---~~ivHrDiKp~Nill~~~~~vkL~DFG~a~  177 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQR---ERFTEHEVQIYVGEIVLALEHLHK---LGIIYRDIKLENILLDSNGHVVLTDFGLSK  177 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTSCEEESCSSEEE
T ss_pred             eeeeeecccccHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHhhc---CCEEeccCCccceeecCCCCEEEeeccchh
Confidence            88999999999999998544   347788999999999999999999   899999999999999999999999999998


Q ss_pred             ccccccccCCCccccccCCCCCCcccCChhhhccC--CCCchhhHHHHHHHHHHHHhCCCCCCCchHH--HHHHhhhhhc
Q 003121          676 FLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASG--ELTPKSDVYSFGIILLRLLTGRPALGITKEV--QYALDTGKLK  751 (846)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~--~~~~ksDVwSlGviL~elltG~~pf~~~~~~--~~~~~~~~~~  751 (846)
                      .+........       ....|++.|++||.+.+.  .++.++|||||||+||+|+||++||......  ...+......
T Consensus       178 ~~~~~~~~~~-------~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~  250 (322)
T d1vzoa_         178 EFVADETERA-------YDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILK  250 (322)
T ss_dssp             ECCGGGGGGG-------CGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHH
T ss_pred             hhcccccccc-------cccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhccc
Confidence            7654332211       223589999999999764  4788999999999999999999999654321  1111111111


Q ss_pred             cccCCCCCCCChhhHHHHHHHHHHHhccCcCCCCCh
Q 003121          752 NLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPEL  787 (846)
Q Consensus       752 ~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~  787 (846)
                      .     ...+|...+..+.+|+.+||..+|.+||++
T Consensus       251 ~-----~~~~~~~~s~~~~~li~~~l~~dP~~R~s~  281 (322)
T d1vzoa_         251 S-----EPPYPQEMSALAKDLIQRLLMKDPKKRLGC  281 (322)
T ss_dssp             C-----CCCCCTTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred             C-----CCCCcccCCHHHHHHHHHHcccCHHHcCCC
Confidence            1     123445567899999999999999999963


No 60 
>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.2e-39  Score=360.43  Aligned_cols=245  Identities=20%  Similarity=0.252  Sum_probs=184.2

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCC--CchhHHHHHHHHHhcCCCceeeEecccc--------Cc
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ--GPSEFQQEIDILSKIRHPNLVTLVGACP--------EV  595 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~--~~~~f~~Ei~iL~~l~HpnIv~l~g~~~--------~~  595 (846)
                      ++|.+.++||+|+||+||+|.+.  +..||||++......  ....+.+|+.+|++++|||||+++++|.        ..
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            57999999999999999999986  688999999865432  1245889999999999999999999883        35


Q ss_pred             eEEEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccc
Q 003121          596 WTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISR  675 (846)
Q Consensus       596 ~~lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~  675 (846)
                      .|+|||||.++.+..+.      ..+++..++.++.||+.||.|||+   +||+||||||+|||++.++.+|++|||+++
T Consensus        97 ~~iv~Ey~~~~l~~~~~------~~~~~~~i~~~~~qil~gl~~LH~---~giiHrDlKP~Nil~~~~~~~kl~df~~~~  167 (355)
T d2b1pa1          97 VYLVMELMDANLCQVIQ------MELDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLAR  167 (355)
T ss_dssp             EEEEEECCSEEHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEECTTCCEEECCCCC--
T ss_pred             eEEEEeccchHHHHhhh------cCCCHHHHHHHHHHHHHHHHHhhh---cccccccCCccccccccccceeeechhhhh
Confidence            78999999776555432      358999999999999999999999   899999999999999999999999999988


Q ss_pred             ccccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhh--------
Q 003121          676 FLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDT--------  747 (846)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~--------  747 (846)
                      .......         .+...||+.|+|||++.+..+++++||||+||++|+|++|++||...+........        
T Consensus       168 ~~~~~~~---------~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~  238 (355)
T d2b1pa1         168 TAGTSFM---------MTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPC  238 (355)
T ss_dssp             ----------------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCC
T ss_pred             ccccccc---------cccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCC
Confidence            6654321         12345899999999999999999999999999999999999999765433211100        


Q ss_pred             ----------------hh-----------hccccCCCCCCCChhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          748 ----------------GK-----------LKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       748 ----------------~~-----------~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                                      ..           +.....+.....+...+..+.+|+.+||..||.+|||+ +++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta-~el  308 (355)
T d2b1pa1         239 PEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISV-DDA  308 (355)
T ss_dssp             HHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCH-HHH
T ss_pred             HHHHHHhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCH-HHH
Confidence                            00           00000011111122346789999999999999999999 554


No 61 
>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=1.4e-39  Score=358.35  Aligned_cols=246  Identities=20%  Similarity=0.281  Sum_probs=190.0

Q ss_pred             cCCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCC--CchhHHHHHHHHHhcCCCceeeEecccc-------Cc
Q 003121          527 THNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ--GPSEFQQEIDILSKIRHPNLVTLVGACP-------EV  595 (846)
Q Consensus       527 ~~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~--~~~~f~~Ei~iL~~l~HpnIv~l~g~~~-------~~  595 (846)
                      .++|.+.++||+|+||+||+|...  ++.||||++......  ....+.+|+.+|+.++|||||++++++.       ..
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            467999999999999999999875  688999999865432  2346889999999999999999999873       23


Q ss_pred             eEEEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecccccc
Q 003121          596 WTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISR  675 (846)
Q Consensus       596 ~~lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~  675 (846)
                      .+++|+|+.+|+|.+++.    ...+++..+..++.||+.||.|||+   +||+||||||+|||++.++.+|++|||++.
T Consensus        97 ~~~i~~~~~gg~L~~~~~----~~~l~e~~~~~i~~qil~aL~~LH~---~giiHrDiKp~NILi~~~~~~kl~dfg~a~  169 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVK----CQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR  169 (348)
T ss_dssp             CCEEEEECCSEEHHHHHT----TCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCCCCCGGGEEECTTCCEEECCC----
T ss_pred             eEEEEEeecCCchhhhcc----cccccHHHHHHHHHHHHHHHHHHHh---CCCcccccCCccccccccccccccccchhc
Confidence            467788889999999984    2459999999999999999999999   899999999999999999999999999987


Q ss_pred             ccccccccCCCccccccCCCCCCcccCChhhhccC-CCCchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHhhhhhccc-
Q 003121          676 FLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASG-ELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNL-  753 (846)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~-~~~~ksDVwSlGviL~elltG~~pf~~~~~~~~~~~~~~~~~~-  753 (846)
                      ......           ....||+.|+|||.+.+. .++.++|||||||++|+|++|++||...+.............. 
T Consensus       170 ~~~~~~-----------~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~  238 (348)
T d2gfsa1         170 HTDDEM-----------TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTP  238 (348)
T ss_dssp             CCTGGG-----------SSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred             ccCccc-----------ccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCC
Confidence            654322           234589999999987765 4689999999999999999999999766543322111000000 


Q ss_pred             ----------------cC--CCCCCCC-----hhhHHHHHHHHHHHhccCcCCCCChHHHH
Q 003121          754 ----------------LD--PLAGDWP-----FVQAEQLANLAMRCCEMSRKSRPELGKDV  791 (846)
Q Consensus       754 ----------------ld--~~~~~~p-----~~~~~~l~~Li~~Cl~~~P~~RPt~~~~v  791 (846)
                                      ..  +.....+     ...+..+.+||.+||..||.+|||+ +++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta-~el  298 (348)
T d2gfsa1         239 GAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITA-AQA  298 (348)
T ss_dssp             CHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCH-HHH
T ss_pred             ChHHhhhccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCH-HHH
Confidence                            00  0000000     1235678999999999999999999 554


No 62 
>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00  E-value=1.2e-35  Score=328.10  Aligned_cols=249  Identities=18%  Similarity=0.254  Sum_probs=186.3

Q ss_pred             CCCcccceeeeeCceEEEEEEEC--CeEEEEEEecCCCCCCchhHHHHHHHHHhcC-----------CCceeeEecccc-
Q 003121          528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIR-----------HPNLVTLVGACP-  593 (846)
Q Consensus       528 ~~f~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~-----------HpnIv~l~g~~~-  593 (846)
                      ++|.+.++||+|+||+||+|+..  ++.||||+++.... ..+.+.+|+.+|+.++           ||||+++++++. 
T Consensus        13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~-~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~   91 (362)
T d1q8ya_          13 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKV-YTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   91 (362)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHH-HHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecccc-chHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence            35999999999999999999875  68899999975432 2356788999998885           578888988873 


Q ss_pred             ---CceEEEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCC------
Q 003121          594 ---EVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANF------  664 (846)
Q Consensus       594 ---~~~~lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~------  664 (846)
                         ...+++|+++..+..............+++..+..++.||+.||.|||+.  .||+||||||+||||+.++      
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~--~~IvHrDlKp~NIll~~~~~~~~~~  169 (362)
T d1q8ya_          92 KGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRR--CGIIHTDIKPENVLMEIVDSPENLI  169 (362)
T ss_dssp             EETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHT--TCEECSCCSGGGEEEEEEETTTTEE
T ss_pred             ccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhh--cCcccccCChhHeeeeccCcccccc
Confidence               34667787776665544444445567789999999999999999999973  6799999999999998654      


Q ss_pred             ceeeeccccccccccccccCCCccccccCCCCCCcccCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCchHHH--
Q 003121          665 VSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQ--  742 (846)
Q Consensus       665 ~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~ksDVwSlGviL~elltG~~pf~~~~~~~--  742 (846)
                      .+||+|||.+.......           ....||+.|+|||++....|+.++||||+||++++|++|++||.......  
T Consensus       170 ~~kl~dfg~s~~~~~~~-----------~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~  238 (362)
T d1q8ya_         170 QIKIADLGNACWYDEHY-----------TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYT  238 (362)
T ss_dssp             EEEECCCTTCEETTBCC-----------CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred             eeeEeeccccccccccc-----------ccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCcccccc
Confidence            48999999988654321           23459999999999999999999999999999999999999996432210  


Q ss_pred             ----HH--------------Hhhhhh-cc---------ccCC-----------CCCCCChhhHHHHHHHHHHHhccCcCC
Q 003121          743 ----YA--------------LDTGKL-KN---------LLDP-----------LAGDWPFVQAEQLANLAMRCCEMSRKS  783 (846)
Q Consensus       743 ----~~--------------~~~~~~-~~---------~ld~-----------~~~~~p~~~~~~l~~Li~~Cl~~~P~~  783 (846)
                          ..              ...... ..         .+..           ....++...+..+.+|+.+||..||.+
T Consensus       239 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~  318 (362)
T d1q8ya_         239 KDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRK  318 (362)
T ss_dssp             CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTT
T ss_pred             chhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhH
Confidence                00              000000 00         0000           012233456788999999999999999


Q ss_pred             CCChHHHH
Q 003121          784 RPELGKDV  791 (846)
Q Consensus       784 RPt~~~~v  791 (846)
                      |||+ +++
T Consensus       319 Rpta-~e~  325 (362)
T d1q8ya_         319 RADA-GGL  325 (362)
T ss_dssp             CBCH-HHH
T ss_pred             CcCH-HHH
Confidence            9999 554


No 63 
>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.85  E-value=5.1e-22  Score=198.64  Aligned_cols=162  Identities=14%  Similarity=0.122  Sum_probs=119.2

Q ss_pred             cccceeeeeCceEEEEEEEC-CeEEEEEEecCCCCC-----C-------------chhHHHHHHHHHhcCCCceeeEecc
Q 003121          531 DPSLKIGEGGYGSIYKGLLR-HMQVAIKMLHPHSLQ-----G-------------PSEFQQEIDILSKIRHPNLVTLVGA  591 (846)
Q Consensus       531 ~~~~~LG~G~fG~Vy~g~~~-~~~VAIK~l~~~~~~-----~-------------~~~f~~Ei~iL~~l~HpnIv~l~g~  591 (846)
                      .+.++||+|+||+||+|... +..||||+++.....     .             ...+.+|...|.++.|++++..+++
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            45678999999999999865 688999998653211     0             0124568899999999999988876


Q ss_pred             ccCceEEEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEecccCCCceEecCCCceeeecc
Q 003121          592 CPEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDF  671 (846)
Q Consensus       592 ~~~~~~lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDLkp~NILl~~~~~vKL~DF  671 (846)
                      ..  .++||||++++.+..+          +......++.|++.+|.|||.   +||+||||||+|||++++ .++|+||
T Consensus        83 ~~--~~lvme~~~~~~~~~l----------~~~~~~~i~~ql~~~l~~lH~---~giiHrDiKP~NILv~~~-~~~liDF  146 (191)
T d1zara2          83 EG--NAVLMELIDAKELYRV----------RVENPDEVLDMILEEVAKFYH---RGIVHGDLSQYNVLVSEE-GIWIIDF  146 (191)
T ss_dssp             ET--TEEEEECCCCEEGGGC----------CCSCHHHHHHHHHHHHHHHHH---TTEECSCCSTTSEEEETT-EEEECCC
T ss_pred             cC--CEEEEEeeccccccch----------hhHHHHHHHHHHHHHHHHHhh---CCEEEccCChhheeeeCC-CEEEEEC
Confidence            43  4799999988766442          223456889999999999999   899999999999999976 4889999


Q ss_pred             ccccccccccccCCCccccccCCCCCCcccCC------hhhhccCCCCchhhHHHHHHHH
Q 003121          672 GISRFLSQNEISSNNTTLCCRTDPKGTFAYMD------PEFLASGELTPKSDVYSFGIIL  725 (846)
Q Consensus       672 Gla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~A------PE~l~~~~~~~ksDVwSlGviL  725 (846)
                      |+|.......                ...|..      .+.+ ...|+.++|+||+.--+
T Consensus       147 G~a~~~~~~~----------------~~~~l~rd~~~~~~~f-~r~y~~~~d~~s~~~~~  189 (191)
T d1zara2         147 PQSVEVGEEG----------------WREILERDVRNIITYF-SRTYRTEKDINSAIDRI  189 (191)
T ss_dssp             TTCEETTSTT----------------HHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHHH
T ss_pred             CCcccCCCCC----------------cHHHHHHHHHHHHHHH-cCCCCCcccHHHHHHHH
Confidence            9987553221                111211      1222 35688899999976544


No 64 
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.78  E-value=6.1e-19  Score=172.84  Aligned_cols=144  Identities=17%  Similarity=0.251  Sum_probs=110.5

Q ss_pred             CEEEEEecCCcc---------ccHHHHHHHhhcC--CCC---cEEEEEeeCCCcccccCCCCCCCCCccHHHHHHHHHHH
Q 003121           45 DKIYVAVAKQVK---------ESKSVLLWALQNS--GGK---RICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIE  110 (846)
Q Consensus        45 ~~V~VAVD~s~~---------~S~~AL~Wal~n~--~~~---~l~lvHV~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (846)
                      .||+||||+| .         .|++||+||++|+  .++   .|+++||.++....   ...........+.....++..
T Consensus         2 ~ki~vavd~s-~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   77 (171)
T d2gm3a1           2 TKVMVAVNAS-TIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDG---FDDVDSIYASPEDFRDMRQSN   77 (171)
T ss_dssp             EEEEEECCBC-SSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-------------CCCCSHHHHHHHTTSH
T ss_pred             CEEEEEEcCC-cccCCCCCCHHHHHHHHHHHHHHHHCCCCCcEEEEEEeccccccc---cccccccccCHHHHHHHHHHH
Confidence            5899999998 5         7999999999996  344   59999999875321   111222334567777888888


Q ss_pred             HHHHHHHHHHHHHHHhhcCCeeeEEEeecCchhhHHHHHHHHcCCCEEEEccCCCChhhhhhhhcchhhHHHHhccCCCc
Q 003121          111 RQDMHNHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPAS  190 (846)
Q Consensus       111 ~~~~~~ll~~~~~~C~~~~V~~e~~~~e~~d~~~~I~~~v~~~~i~~LVmGs~~~~~~~R~~~~~~~~~a~~v~~sa~~~  190 (846)
                      .+.++++|+++...|...++++++.+.+ |++.++||++|+++++|+||||+++.+.+.|.+.   |.++..|++.++  
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~v~~-G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~l---GSv~~~vi~~~~--  151 (171)
T d2gm3a1          78 KAKGLHLLEFFVNKCHEIGVGCEAWIKT-GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFV---GTVSAFCVKHAE--  151 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEEEE-SCHHHHHHHHHHHHCCSEEEEEECCCC-----------CHHHHHHHHCS--
T ss_pred             HHHHHHHHHHHHHHHHhcCCceEEEEEe-CChHHHHHHHHhhcCCcEEEeccCCccccccCcc---CcHHHHHHhCCC--
Confidence            8899999999999999999999987655 7999999999999999999999999999998775   789999999987  


Q ss_pred             cEEEEEec
Q 003121          191 CHIWFICN  198 (846)
Q Consensus       191 C~v~~i~~  198 (846)
                      |.|++|-.
T Consensus       152 cpVlvV~~  159 (171)
T d2gm3a1         152 CPVMTIKR  159 (171)
T ss_dssp             SCEEEEEC
T ss_pred             CCEEEEeC
Confidence            99999953


No 65 
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.70  E-value=7.7e-17  Score=155.46  Aligned_cols=149  Identities=10%  Similarity=0.117  Sum_probs=119.1

Q ss_pred             cCCEEEEEecCCccccHHHHHHHhhcC--CCCcEEEEEeeCCCcccccCCC-----CCCCCCccHHHHHHHHHHHHHHHH
Q 003121           43 IEDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGT-----KFPASSLEEEKVQAYREIERQDMH  115 (846)
Q Consensus        43 ~~~~V~VAVD~s~~~S~~AL~Wal~n~--~~~~l~lvHV~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  115 (846)
                      |=++|+||||+| +.|.+||+||++..  .+.+|+|+||.++.........     ........++....+++...+.++
T Consensus         2 m~~~ILvavD~s-~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1mjha_           2 MYKKILYPTDFS-ETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAK   80 (160)
T ss_dssp             CCCEEEEECCSC-HHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHH
T ss_pred             CcCeEEEEECCC-HHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence            558999999999 99999999999974  5779999999877533221110     111112234455567777788899


Q ss_pred             HHHHHHHHHHhhcCCeeeEEEeecCchhhHHHHHHHHcCCCEEEEccCCCChhhhhhhhcchhhHHHHhccCCCccEEEE
Q 003121          116 NHLDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWF  195 (846)
Q Consensus       116 ~ll~~~~~~C~~~~V~~e~~~~e~~d~~~~I~~~v~~~~i~~LVmGs~~~~~~~R~~~~~~~~~a~~v~~sa~~~C~v~~  195 (846)
                      +.++++...|...||++++.+.. |+|.++|+++++++++|+||||+|+.+.+++.+.   |.++..|+.+++  |.|++
T Consensus        81 ~~l~~~~~~~~~~gv~~~~~~~~-G~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~---GS~a~~vl~~s~--~pVlv  154 (160)
T d1mjha_          81 NKMENIKKELEDVGFKVKDIIVV-GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILL---GSVTENVIKKSN--KPVLV  154 (160)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSS---CHHHHHHHHHCC--SCEEE
T ss_pred             HHHHHHHHHHHhcCCeEEEEEEe-ccHHHHHhhhhhccccceEEeccCCCCccccccc---CcHHHHHHhcCC--CCEEE
Confidence            99999999999999999988765 6999999999999999999999999999998876   788999999986  99999


Q ss_pred             Eec
Q 003121          196 ICN  198 (846)
Q Consensus       196 i~~  198 (846)
                      |-+
T Consensus       155 V~~  157 (160)
T d1mjha_         155 VKR  157 (160)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            954


No 66 
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}
Probab=99.61  E-value=1.4e-15  Score=142.11  Aligned_cols=132  Identities=15%  Similarity=0.184  Sum_probs=102.8

Q ss_pred             CEEEEEecCCccccHHHHHHHhhcC--CCCcEEEEEeeCCCcccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 003121           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCL  122 (846)
Q Consensus        45 ~~V~VAVD~s~~~S~~AL~Wal~n~--~~~~l~lvHV~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~  122 (846)
                      ++|+||||+| +.|.+|++||++..  .+.+|+|+||.++....      . ..    .......+...+.+++.++++.
T Consensus         2 k~Ilv~~D~s-~~s~~a~~~a~~~a~~~~~~l~ll~V~~~~~~~------~-~~----~~~~~~~~~~~~~~~~~l~~~~   69 (135)
T d2z3va1           2 KTILLAYDGS-EHARRAAEVAKAEAEAHGARLIVVHAYEPVPDY------L-GE----PFFEEALRRRLERAEGVLEEAR   69 (135)
T ss_dssp             CEEEEECCSS-HHHHHHHHHHHHHHHHHTCEEEEEEEECCCCTT------C-CT----THHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCC-HHHHHHHHHHHHHHHHcCCEEEEEEEecCCccc------c-cc----chhHHHHHHHHHHHHHHHHHHH
Confidence            6899999999 99999999999973  57899999999865321      1 11    1223333444556666666655


Q ss_pred             HHHhhcCCeeeEEEeecCchhhHHHHHHHHcCCCEEEEccCCCChhhhhhhhcchhhHHHHhccCCCccEEEEE
Q 003121          123 LICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFI  196 (846)
Q Consensus       123 ~~C~~~~V~~e~~~~e~~d~~~~I~~~v~~~~i~~LVmGs~~~~~~~R~~~~~~~~~a~~v~~sa~~~C~v~~i  196 (846)
                      .   ..++...+.++..|+|.++||++|+++++|+||||+|+++.+.|.+.   |.++..+++.++  |.|.+|
T Consensus        70 ~---~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~---Gs~~~~ll~~~~--~pVlvV  135 (135)
T d2z3va1          70 A---LTGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFL---GSQSQRVVAEAP--CPVLLV  135 (135)
T ss_dssp             H---HHCCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEESSCSSSCBCSSC---BHHHHHHHHHCS--SCEEEE
T ss_pred             H---hcCCCeEEEEEEcCChHHHHHHHhhhhheeeEEeccCCCCccccccc---CcHHHHHHHhCC--CCEEeC
Confidence            4   45666666666779999999999999999999999999998887775   788999999987  999886


No 67 
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.54  E-value=1.7e-14  Score=136.37  Aligned_cols=139  Identities=12%  Similarity=0.107  Sum_probs=102.4

Q ss_pred             CEEEEEecCCccccHHHHHHHhhcC-CCCcEEEEEeeCCCcccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 003121           45 DKIYVAVAKQVKESKSVLLWALQNS-GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLL  123 (846)
Q Consensus        45 ~~V~VAVD~s~~~S~~AL~Wal~n~-~~~~l~lvHV~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~  123 (846)
                      ++|+||||+| +.|.+||+||++.. ..+.++++|+..+..........        .......+...+.++++++.+..
T Consensus         6 k~ILv~vD~s-~~s~~al~~A~~la~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~   76 (147)
T d1tq8a_           6 KTVVVGTDGS-DSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADI--------LKDESYKVTGTAPIYEILHDAKE   76 (147)
T ss_dssp             CEEEEECCSS-HHHHHHHHHHHHHHTTTSEEEEEEECCC----------------------------CCTHHHHHHHHHH
T ss_pred             CEEEEEECCC-HHHHHHHHHHHHHHhcCCCEEEEEEEeccccccccccc--------chhhhHHHHHHHHHHHHHHHHHH
Confidence            7999999999 99999999999873 44555556655443221111000        11133455566778899999999


Q ss_pred             HHhhcCCeeeEEEeecCchhhHHHHHHHHcCCCEEEEccCCCChhhhhhhhcchhhHHHHhccCCCccEEEEEe
Q 003121          124 ICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (846)
Q Consensus       124 ~C~~~~V~~e~~~~e~~d~~~~I~~~v~~~~i~~LVmGs~~~~~~~R~~~~~~~~~a~~v~~sa~~~C~v~~i~  197 (846)
                      .|.+.++......+..|++.+.|+++++++++|+||||+++.+.+.|.+.   |.++..+++.++  |.|++|.
T Consensus        77 ~~~~~~~~~~~~~~~~G~~~~~i~~~a~~~~~dlIv~g~~~~~~~~~~l~---Gs~~~~ll~~~~--~pVlvV~  145 (147)
T d1tq8a_          77 RAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLL---GSVPANVSRRAK--VDVLIVH  145 (147)
T ss_dssp             HHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHT---BBHHHHHHHHTT--CEEEEEC
T ss_pred             HHHHcCCCcEEEEEEecChHHHHHHhhhccceeEEEecCCCCCccccccc---ccHHHHHHHhCC--CCEEEEe
Confidence            99999987655666778999999999999999999999999999888775   778899999986  9999984


No 68 
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}
Probab=99.48  E-value=1.1e-14  Score=135.90  Aligned_cols=122  Identities=10%  Similarity=0.055  Sum_probs=91.5

Q ss_pred             CEEEEEecCCccccHHHHHHHhhcC--CCCcEEEEEeeCCCcccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 003121           45 DKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCL  122 (846)
Q Consensus        45 ~~V~VAVD~s~~~S~~AL~Wal~n~--~~~~l~lvHV~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~  122 (846)
                      ++|+||+|.| +.|.+||+||.+..  .+..|+|+||.++.............. ..    ....+..++.+++.++.+.
T Consensus         5 k~ILv~~D~S-~~s~~al~~A~~~a~~~~a~l~llhv~~~~~~~~~~~~~~~~~-~~----~~~~e~~~~~~~~~l~~~~   78 (138)
T d1q77a_           5 KVLLVLTDAY-SDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLP-FP----PEIKEESKKRIERRLREVW   78 (138)
T ss_dssp             EEEEEEESTT-CCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCC-CC----THHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEeCC-HHHHHHHHHHHHhhhhccceEEEEEEccCcccccccccccccc-hh----hhhhhhhhhhccccchhhc
Confidence            7999999999 99999999999984  478999999997642211111111111 11    2344555667777788888


Q ss_pred             HHHhhcCCeeeEEEeecCchhhHHHHHHHHcCCCEEEEccCCCChhhhhhh
Q 003121          123 LICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMM  173 (846)
Q Consensus       123 ~~C~~~~V~~e~~~~e~~d~~~~I~~~v~~~~i~~LVmGs~~~~~~~R~~~  173 (846)
                      ..+...+++++..+.. |+|.+.|+++|+++++|+||||+||.+.++|-+.
T Consensus        79 ~~~~~~~~~~~~~v~~-G~~~~~I~~~a~~~~~DLIV~Gs~g~~~l~r~l~  128 (138)
T d1q77a_          79 EKLTGSTEIPGVEYRI-GPLSEEVKKFVEGKGYELVVWACYPSAYLCKVID  128 (138)
T ss_dssp             HHHHSCCCCCCEEEEC-SCHHHHHHHHHTTSCCSEEEECSCCGGGTHHHHH
T ss_pred             ccccccceeEEEeeec-chhHHHHHHhhhhccCCEEEEecCCCcHHHHHhc
Confidence            8888888888877644 7999999999999999999999998777666554


No 69 
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}
Probab=99.48  E-value=5.1e-14  Score=131.95  Aligned_cols=134  Identities=16%  Similarity=0.148  Sum_probs=99.1

Q ss_pred             cCCEEEEEecCCccccHHHHHHHhhcC--CCCcEEEEEeeCCCcccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 003121           43 IEDKIYVAVAKQVKESKSVLLWALQNS--GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (846)
Q Consensus        43 ~~~~V~VAVD~s~~~S~~AL~Wal~n~--~~~~l~lvHV~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  120 (846)
                      |-++|+||||+| +.|..||.||....  .+..|+++||.+++....  +..      .+......++...   +.+...
T Consensus         1 myk~ILv~vD~s-~~s~~al~~A~~~a~~~~~~v~~lhv~~~~~~~~--~~~------~~~~~~~~~~~~~---~~~~~~   68 (140)
T d1jmva_           1 MYKHILVAVDLS-EESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLY--TGL------IDVNMSSMQDRIS---TETQKA   68 (140)
T ss_dssp             CCSEEEEEECCS-TTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGC--CCC------EEHHHHHHTTCCC---CHHHHH
T ss_pred             CCCeEEEEECCC-HHHHHHHHHHHHHHHHcCCeEEEEEEeeeccccc--ccc------cccchHHHHHHHH---HHHHHH
Confidence            458999999999 99999999999885  578999999988764311  111      1122222222222   334455


Q ss_pred             HHHHHhhcCCeeeEEEeecCchhhHHHHHHHHcCCCEEEEccCCCChhhhhhhhcchhhHHHHhccCCCccEEEEE
Q 003121          121 CLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFI  196 (846)
Q Consensus       121 ~~~~C~~~~V~~e~~~~e~~d~~~~I~~~v~~~~i~~LVmGs~~~~~~~R~~~~~~~~~a~~v~~sa~~~C~v~~i  196 (846)
                      ....+.+.+....+.++..+++.++|+++++++++|+||||+|+++...  +    +..+..+++.++  |.|++|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~~~~~dliV~G~~~~~~~~--l----gs~~~~li~~~~--~pVliV  136 (140)
T d1jmva_          69 LLDLAESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQDFWSK--L----MSSTRQVMNTIK--IDMLVV  136 (140)
T ss_dssp             HHHHHHHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEECCCCHHH--H----HHHHHHHHTTCC--SEEEEE
T ss_pred             HHHHHHhcCCceEEEEEEecCHHHHHHHhhhhchhhEEEeccCCCCCCC--c----ccHHHHHHhccC--CCEEEE
Confidence            5556666677767677788999999999999999999999999877653  3    456789999986  999998


No 70 
>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}
Probab=98.43  E-value=3e-07  Score=93.86  Aligned_cols=145  Identities=15%  Similarity=0.143  Sum_probs=97.4

Q ss_pred             hhhhcCCCcccceeeeeCceEEEEEEECCeEEEEEEecCCCCCCchhHHHHHHHHHhcC-CCceeeEeccc--cCceEEE
Q 003121          523 IEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIR-HPNLVTLVGAC--PEVWTLV  599 (846)
Q Consensus       523 i~~~~~~f~~~~~LG~G~fG~Vy~g~~~~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~-HpnIv~l~g~~--~~~~~lV  599 (846)
                      ++.....|...+..+.+..+.||+....+..+.+|+...........+.+|...|..|. +--+.+++.++  .+..++|
T Consensus         9 l~~~~~~~~~~~~~~G~s~~~v~rv~~~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~~lv   88 (263)
T d1j7la_           9 LKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL   88 (263)
T ss_dssp             HHHHHTTSEEEECSCCCSSSEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred             HHHhhhceEEEEcCCCCCCCcEEEEEeCCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCceEEE
Confidence            33334455544444444457899988788889999887665555567889999988774 32244555554  4567899


Q ss_pred             EEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcC-----------------------------------
Q 003121          600 YEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCK-----------------------------------  644 (846)
Q Consensus       600 mEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~-----------------------------------  644 (846)
                      |++++|.++.+.....        .....++.+++..|..||+..                                   
T Consensus        89 ~~~l~G~~~~~~~~~~--------~~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (263)
T d1j7la_          89 MSEADGVLCSEEYEDE--------QSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE  160 (263)
T ss_dssp             EECCSSEEHHHHTTTC--------SCHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGST
T ss_pred             EEeccccccccccccc--------ccHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhcccc
Confidence            9999998886654211        112334555566666666421                                   


Q ss_pred             ---------------------CCceEecccCCCceEecCCCceeeecccccc
Q 003121          645 ---------------------PHSIVHGDLKPANILLDANFVSKLSDFGISR  675 (846)
Q Consensus       645 ---------------------~~giiHrDLkp~NILl~~~~~vKL~DFGla~  675 (846)
                                           +..++|+|+.|.|||++.++.+-|+||+.+.
T Consensus       161 ~~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         161 DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             TCSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             cccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhcc
Confidence                                 1237999999999999987667799999765


No 71 
>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}
Probab=97.64  E-value=7.1e-05  Score=75.16  Aligned_cols=127  Identities=17%  Similarity=0.138  Sum_probs=80.7

Q ss_pred             eeeeeCc-eEEEEEEECC-eEEEEEEecCCCCCCchhHHHHHHHHHhcCCC--ceeeEeccc--cCceEEEEEecCCCch
Q 003121          535 KIGEGGY-GSIYKGLLRH-MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHP--NLVTLVGAC--PEVWTLVYEYLPNGSL  608 (846)
Q Consensus       535 ~LG~G~f-G~Vy~g~~~~-~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~Hp--nIv~l~g~~--~~~~~lVmEy~~ggsL  608 (846)
                      .+..|.. +.||+....+ ..+.+|......   ...+..|...|+.|...  .+.++++++  ....++||+|++|.++
T Consensus        17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~---~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA---LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSCT---TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             EcCCcccCCeEEEEEeCCCCEEEEEeCCccC---HhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            3445553 6789887765 457888766543   34678899999887432  245566554  4567899999998776


Q ss_pred             hhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhc---------------------------------------------
Q 003121          609 EDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSC---------------------------------------------  643 (846)
Q Consensus       609 ~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~---------------------------------------------  643 (846)
                      .+..        +..   ..++.++...|.-||..                                             
T Consensus        94 ~~~~--------~~~---~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (255)
T d1nd4a_          94 LSSH--------LAP---AEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELF  162 (255)
T ss_dssp             TTSC--------CCH---HHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHH
T ss_pred             cccc--------ccH---HHHHHHHHHHHHHHccCChhhCCCcccchhhHHHHHHHHHHhhhccccccchhhhhHHHHHH
Confidence            4421        110   11122333333333321                                             


Q ss_pred             ----------CCCceEecccCCCceEecCCCceeeecccccc
Q 003121          644 ----------KPHSIVHGDLKPANILLDANFVSKLSDFGISR  675 (846)
Q Consensus       644 ----------~~~giiHrDLkp~NILl~~~~~vKL~DFGla~  675 (846)
                                .+..++|+|+.|.|||++.+..+-|+||+.+.
T Consensus       163 ~~l~~~~~~~~~~~liHgD~~~~Nvl~~~~~~~~iID~~~~~  204 (255)
T d1nd4a_         163 ARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG  204 (255)
T ss_dssp             HHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHHHHhCCccCCceEEeCCCCCcceEEeCCceEEEEEchhcc
Confidence                      11247999999999999987777899999754


No 72 
>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}
Probab=97.48  E-value=0.00014  Score=78.67  Aligned_cols=75  Identities=17%  Similarity=0.113  Sum_probs=52.7

Q ss_pred             ceeeeeCceEEEEEEEC--CeEEEEEEecCC-------CCCCchhHHHHHHHHHhcC-C--CceeeEeccccCceEEEEE
Q 003121          534 LKIGEGGYGSIYKGLLR--HMQVAIKMLHPH-------SLQGPSEFQQEIDILSKIR-H--PNLVTLVGACPEVWTLVYE  601 (846)
Q Consensus       534 ~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~-------~~~~~~~f~~Ei~iL~~l~-H--pnIv~l~g~~~~~~~lVmE  601 (846)
                      +.||.|....||+....  +..|+||.-.+.       .....+....|...|..+. +  ..+.+++++.++..++|||
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~d~~~~~lvmE  111 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDTEMAVTVME  111 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEETTTTEEEEC
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEEcCCCCEEEEe
Confidence            45899999999998754  457899965431       1123456778999988773 2  3466778888888899999


Q ss_pred             ecCCCch
Q 003121          602 YLPNGSL  608 (846)
Q Consensus       602 y~~ggsL  608 (846)
                      |+.+..+
T Consensus       112 ~L~~~~~  118 (392)
T d2pula1         112 DLSHLKI  118 (392)
T ss_dssp             CCTTSEE
T ss_pred             ccCCccc
Confidence            9987543


No 73 
>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}
Probab=96.72  E-value=0.0049  Score=63.45  Aligned_cols=153  Identities=14%  Similarity=0.097  Sum_probs=81.3

Q ss_pred             hhhhhhcCCCcccce-----eeeeCceEEEEEEECCeEEEEEEecCCCCCCchhHHHHHHHHHhcCCCce--eeEecc--
Q 003121          521 SEIEGATHNFDPSLK-----IGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNL--VTLVGA--  591 (846)
Q Consensus       521 ~ei~~~~~~f~~~~~-----LG~G~fG~Vy~g~~~~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnI--v~l~g~--  591 (846)
                      .++.....+|.+...     |..|---+.|+....+..+++|++...  .+.+.+..|+.+|..|...++  ...+-.  
T Consensus         6 ~el~~~l~~Y~lg~~~~~~~i~~G~~N~ny~v~t~~g~yVLri~~~~--~~~~~l~~~~~~l~~L~~~g~pvp~pi~~~~   83 (316)
T d2ppqa1           6 DELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKDPLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPLPLPRKD   83 (316)
T ss_dssp             HHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSCCEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCCBTT
T ss_pred             HHHHHHHHhCCCCCceEeecCCCCcccCeEEEEECCCcEEEEEcCCC--CCHHHHHHHHHHHHhhhhccccccccceecC
Confidence            444444455655433     334555678998888888999998653  234567778888888743222  111111  


Q ss_pred             ------ccCceEEEEEecCCCchhhh--------------hc----cCCC--CCCCCHH------------------HHH
Q 003121          592 ------CPEVWTLVYEYLPNGSLEDR--------------LS----CKDN--SPPLSWQ------------------TRI  627 (846)
Q Consensus       592 ------~~~~~~lVmEy~~ggsL~~~--------------L~----~~~~--~~~l~~~------------------~~~  627 (846)
                            .......++.++.+......              +.    ....  .......                  ...
T Consensus        84 g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (316)
T d2ppqa1          84 GELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLR  163 (316)
T ss_dssp             CCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTSTTHH
T ss_pred             CCcceeeecccceeeeecccccccccchhHHHHHHHHHHhhhhhhhhcccccccccchhhcchhhhHHHHhhhhcchhHH
Confidence                  13345567777766433210              00    0000  0000000                  011


Q ss_pred             HHHHHHHHHHHHHhh-cCCCceEecccCCCceEecCCCceeeecccccc
Q 003121          628 RIATELCSVLIFLHS-CKPHSIVHGDLKPANILLDANFVSKLSDFGISR  675 (846)
Q Consensus       628 ~i~~qia~aL~~LH~-~~~~giiHrDLkp~NILl~~~~~vKL~DFGla~  675 (846)
                      ..+..+...+...+. .-+.|+||+|+.++|||++.+...-|.||+.+.
T Consensus       164 ~~l~~~~~~~~~~~~~~L~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         164 EEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             HHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             HHHHHHHHhhhccCccccccccccCCcchhhhhcccccceeEecccccc
Confidence            112222222222221 235789999999999999988777899999765


No 74 
>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}
Probab=96.20  E-value=0.013  Score=60.70  Aligned_cols=132  Identities=12%  Similarity=0.151  Sum_probs=75.6

Q ss_pred             eEEEEEEEC-CeEEEEEEecCCCCCCchhHHHHHHHHHhcCCCce--eeEecc-------ccCceEEEEEecCCCchhh-
Q 003121          542 GSIYKGLLR-HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNL--VTLVGA-------CPEVWTLVYEYLPNGSLED-  610 (846)
Q Consensus       542 G~Vy~g~~~-~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnI--v~l~g~-------~~~~~~lVmEy~~ggsL~~-  610 (846)
                      -.||+.... |..|++|+.++.. .+.+.+..|...|..|...+|  +..+..       .....+.+++|++|..+.. 
T Consensus        36 N~vy~v~~~dg~~~VlK~~rp~~-~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G~~~~~~  114 (325)
T d1zyla1          36 NRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEAD  114 (325)
T ss_dssp             SEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCEECCSS
T ss_pred             ceeEEEEcCCCCEEEEEEeCCCC-CCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCCcCCCCC
Confidence            479998775 6779999987643 345678899999988842222  222211       1345678999998754321 


Q ss_pred             -----------------hhccC--CCCCCCCHHH-------------------HHHHHHHHHHHHHHHh----hcCCCce
Q 003121          611 -----------------RLSCK--DNSPPLSWQT-------------------RIRIATELCSVLIFLH----SCKPHSI  648 (846)
Q Consensus       611 -----------------~L~~~--~~~~~l~~~~-------------------~~~i~~qia~aL~~LH----~~~~~gi  648 (846)
                                       .....  .....++...                   ...+...+...+..+.    ...+.++
T Consensus       115 ~~~~~~~lG~~LA~lH~~~~~~~~~~r~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~l  194 (325)
T d1zyla1         115 NIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLR  194 (325)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEE
T ss_pred             CHHHHHHHHHHHHHHHhhcccCCccccCCCCHHHHhhhhHHHHHHcCcCCHHHHHHHHHHHHHHHHHHHHhccccCCcee
Confidence                             00000  0111222211                   1112222222333332    2235689


Q ss_pred             EecccCCCceEecCCCceeeeccccccc
Q 003121          649 VHGDLKPANILLDANFVSKLSDFGISRF  676 (846)
Q Consensus       649 iHrDLkp~NILl~~~~~vKL~DFGla~~  676 (846)
                      ||+|+.|.|||++.+  ..++||+-|..
T Consensus       195 iHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         195 LHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             CCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             ecCCCCcccEEEeCC--ceEEechhccc
Confidence            999999999999754  35899997763


No 75 
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}
Probab=96.18  E-value=0.0069  Score=64.69  Aligned_cols=72  Identities=19%  Similarity=0.276  Sum_probs=48.6

Q ss_pred             ceeeeeCceEEEEEEECC---------eEEEEEEecCCCCCCchhHHHHHHHHHhcCCCce-eeEeccccCceEEEEEec
Q 003121          534 LKIGEGGYGSIYKGLLRH---------MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNL-VTLVGACPEVWTLVYEYL  603 (846)
Q Consensus       534 ~~LG~G~fG~Vy~g~~~~---------~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnI-v~l~g~~~~~~~lVmEy~  603 (846)
                      +.|+.|-.=.+|+.....         ..|.+++... . ...-...+|..+++.+.-.++ .+++++|++  .+||||+
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~-~-~~~idr~~E~~i~~~ls~~gl~Pkll~~~~~--g~I~efi  123 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFN-P-ETESHLVAESVIFTLLSERHLGPKLYGIFSG--GRLEEYI  123 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECS-C-CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT--EEEECCC
T ss_pred             EEcCCccccceEEEEeCCCCccccCCCCcEEEEecCC-c-chhhHHHHHHHHHHHHHhCCCCCeEEEEcCC--ceEEEEe
Confidence            457777788999987642         3577776652 2 223356689999998853344 467887765  6799999


Q ss_pred             CCCchh
Q 003121          604 PNGSLE  609 (846)
Q Consensus       604 ~ggsL~  609 (846)
                      +|.+|.
T Consensus       124 ~g~~l~  129 (395)
T d1nw1a_         124 PSRPLS  129 (395)
T ss_dssp             CEEECC
T ss_pred             ccccCC
Confidence            876543


No 76 
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}
Probab=87.01  E-value=1.2  Score=42.48  Aligned_cols=93  Identities=13%  Similarity=0.150  Sum_probs=60.2

Q ss_pred             CCEEEEEecCCccccHHHHHHHhhcC----CCCcEEEEEeeCCCcccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Q 003121           44 EDKIYVAVAKQVKESKSVLLWALQNS----GGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLD  119 (846)
Q Consensus        44 ~~~V~VAVD~s~~~S~~AL~Wal~n~----~~~~l~lvHV~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  119 (846)
                      +++|+|||-|. ..|+- |.|.|..+    ....|+++||..-...         .                  +..-..
T Consensus        24 ~~kv~Va~SGG-~DS~~-Ll~lL~~~~~~~~~~~i~~~~vdh~~r~---------~------------------s~~~~~   74 (216)
T d1wy5a1          24 ERRVLIAFSGG-VDSVV-LTDVLLKLKNYFSLKEVALAHFNHMLRE---------S------------------AERDEE   74 (216)
T ss_dssp             CCEEEEECCSS-HHHHH-HHHHHHHSTTTTTCSEEEEEEEECCSST---------H------------------HHHHHH
T ss_pred             CCeEEEEeCCc-HHHHH-HHHHHHHHHHhcCCCcEEEEEeeccccc---------c------------------hhhhhh
Confidence            46999999999 78884 44555442    3447999999642110         0                  011123


Q ss_pred             HHHHHHhhcCCeeeEEEeecC--------ch--------hhHHHHHHHHcCCCEEEEccCCC
Q 003121          120 MCLLICRQMGVRAEKLDTESE--------ST--------EKGILELISHYGIRKLVMGAAAD  165 (846)
Q Consensus       120 ~~~~~C~~~~V~~e~~~~e~~--------d~--------~~~I~~~v~~~~i~~LVmGs~~~  165 (846)
                      ..+.+|...||.+....+...        ..        ...+.+++++++++.|++|-|.+
T Consensus        75 ~~~~~~~~l~i~~~i~~~~~~~~~~~~~~~~~~~~R~~Ry~~l~~~a~~~~~~~ia~GH~~d  136 (216)
T d1wy5a1          75 FCKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLN  136 (216)
T ss_dssp             HHHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHH
T ss_pred             HHHHHHHhhhhhhhhhccchhhhccCCccchHHHHHHHHHHHhhhhccccccceeEeeeecc
Confidence            457889999998775543211        00        24678899999999999997653


No 77 
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=77.80  E-value=6.4  Score=36.44  Aligned_cols=35  Identities=17%  Similarity=0.322  Sum_probs=27.4

Q ss_pred             CCEEEEEecCCccccHHHHHHHhhcCCCCcEEEEEeeC
Q 003121           44 EDKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHT   81 (846)
Q Consensus        44 ~~~V~VAVD~s~~~S~~AL~Wal~n~~~~~l~lvHV~~   81 (846)
                      ..||+||+-|. ..|.-++.|+.+.  |..++.||+..
T Consensus         4 ~gKvvv~~SGG-~DS~vla~ll~k~--g~~v~av~~~~   38 (218)
T d2c5sa1           4 GGKVMVLLSGG-IDSPVAAYLTMKR--GVSVEAVHFHS   38 (218)
T ss_dssp             TEEEEEECCSS-SHHHHHHHHHHHB--TEEEEEEEEEC
T ss_pred             CCEEEEEecCc-HHHHHHHHHHHHc--CCeEEEEEEeC
Confidence            35899999999 7787777676653  56899999974


No 78 
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=69.99  E-value=11  Score=34.67  Aligned_cols=96  Identities=10%  Similarity=0.060  Sum_probs=57.8

Q ss_pred             HHHHHHhhcCCCCcEEEEEeeCCCcccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEEEeec
Q 003121           60 SVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTES  139 (846)
Q Consensus        60 ~AL~Wal~n~~~~~l~lvHV~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~C~~~~V~~e~~~~e~  139 (846)
                      .||..|+++  ++.|+.|+|..|........+....   .+.-        .+=..+-|.....-.++.|+..-   +..
T Consensus        22 ~aL~~A~~~--~~~vi~vyi~dp~~~~~~~~~~~~~---~~~r--------~~fl~~sL~~L~~~L~~~g~~L~---v~~   85 (204)
T d1np7a2          22 EPLHRALKS--GLAITAVYCYDPRQFAQTHQGFAKT---GPWR--------SNFLQQSVQNLAESLQKVGNKLL---VTT   85 (204)
T ss_dssp             HHHHHHHHT--TSEEEEEEEECGGGGSBCTTSCBSS---CHHH--------HHHHHHHHHHHHHHHHHTTCCEE---EEE
T ss_pred             HHHHHHHhc--CCcEEEEEEECchHhcCcccccccc---cHHH--------HHHHHHHHHHHHHHHHhccchhh---hhh
Confidence            488888874  5689999999876432211111111   1111        11122234444445567777633   334


Q ss_pred             CchhhHHHHHHHHcCCCEEEEccCCCChhhhhh
Q 003121          140 ESTEKGILELISHYGIRKLVMGAAADKHYKKKM  172 (846)
Q Consensus       140 ~d~~~~I~~~v~~~~i~~LVmGs~~~~~~~R~~  172 (846)
                      |++.++|.+++++++|+.|..- ..++.+.+..
T Consensus        86 G~~~~~l~~l~~~~~i~~V~~n-~~~~~~e~~r  117 (204)
T d1np7a2          86 GLPEQVIPQIAKQINAKTIYYH-REVTQEELDV  117 (204)
T ss_dssp             SCHHHHHHHHHHHTTEEEEEEE-CCCSHHHHHH
T ss_pred             hhhHHHHHHHHHHhhhhheeee-ccccHHHHHH
Confidence            8999999999999999998864 5566665444


No 79 
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=69.30  E-value=3.8  Score=38.83  Aligned_cols=93  Identities=20%  Similarity=0.181  Sum_probs=56.0

Q ss_pred             CCEEEEEecCCccccHHHHHHHhh---cCCCCcEEEEEeeCCCcccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 003121           44 EDKIYVAVAKQVKESKSVLLWALQ---NSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDM  120 (846)
Q Consensus        44 ~~~V~VAVD~s~~~S~~AL~Wal~---n~~~~~l~lvHV~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  120 (846)
                      .++|+|||-|. ..|+..|....+   ...+-.|+++||-+-...          .                 +..-...
T Consensus        13 ~kkvlva~SGG-~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~~r~----------~-----------------s~~~~~~   64 (227)
T d1ni5a1          13 SRQILVAFSGG-LDSTVLLHQLVQWRTENPGVALRAIHVHHGLSA----------N-----------------ADAWVTH   64 (227)
T ss_dssp             CSEEEEECCSB-HHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCS----------S-----------------HHHHHHH
T ss_pred             CCcEEEEecCc-HHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCc----------c-----------------hhhhHHH
Confidence            47999999999 788855443332   234668999999743210          0                 1223345


Q ss_pred             HHHHHhhcCCeeeEEEeecCchhhHH----------HHHHHHcCCCEEEEccCC
Q 003121          121 CLLICRQMGVRAEKLDTESESTEKGI----------LELISHYGIRKLVMGAAA  164 (846)
Q Consensus       121 ~~~~C~~~~V~~e~~~~e~~d~~~~I----------~~~v~~~~i~~LVmGs~~  164 (846)
                      ...+|.+.+|......+........+          ......++.+.|++|-|.
T Consensus        65 ~~~~~~~~~i~~~i~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~gH~~  118 (227)
T d1ni5a1          65 CENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHL  118 (227)
T ss_dssp             HHHHHHHTTCCEEEECCCCCCSSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCH
T ss_pred             HHHHHhhccCcceeeeccccccccchhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            67789999998775543322222222          223346778888888543


No 80 
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain {Physarum polycephalum [TaxId: 5791]}
Probab=63.23  E-value=7.6  Score=38.61  Aligned_cols=132  Identities=13%  Similarity=0.065  Sum_probs=78.4

Q ss_pred             eeeeCceEEEEEEECCeEEEEEEecCCCCCCchhHHHHHHHHHhcCCCceeeEeccc-----------------------
Q 003121          536 IGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC-----------------------  592 (846)
Q Consensus       536 LG~G~fG~Vy~g~~~~~~VAIK~l~~~~~~~~~~f~~Ei~iL~~l~HpnIv~l~g~~-----------------------  592 (846)
                      +..+|.+-|+-+..++..++||.-.   ....+.|..++...-.+.-|...-+- .|                       
T Consensus        76 ~s~~Gs~Gv~FV~~e~gaiVlK~s~---tta~E~y~~eLAr~LGvpvPqmRvI~-~~~~E~~~~~~~~l~~~e~d~~I~s  151 (342)
T d1cjaa_          76 RSEKGTEGLFFVETESGVFIVKRST---NIESETFCSLLCMRLGLHAPKVRVVS-SNSEEGTNMLECLAAIDKSFRVITT  151 (342)
T ss_dssp             ECCSTTSCEEEEEESSCEEEEECCT---THHHHHHHHHHHHHHTCCCCCEEEEE-SSSHHHHHHHHHHHHHCSSSCHHHH
T ss_pred             EeecCCceEEEEEcCCceEEEecCC---chHHHHHHHHHHHHhCCCCCceEEec-CCCHHHHHHHHHHhcCCChhHHHHH
Confidence            4556666677677778888888632   22345677788777788899866553 11                       


Q ss_pred             --cCceEEEEEecCCCchhhhhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCceEeccc-CCCceEecCCC-ceee
Q 003121          593 --PEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDL-KPANILLDANF-VSKL  668 (846)
Q Consensus       593 --~~~~~lVmEy~~ggsL~~~L~~~~~~~~l~~~~~~~i~~qia~aL~~LH~~~~~giiHrDL-kp~NILl~~~~-~vKL  668 (846)
                        .....++|||++|..|.+.-.... ...+....... +-.|+--=.+++.....|+++|+- .+.||+++.++ .+..
T Consensus       152 el~~A~~liMeYvpG~~l~e~~~~~a-~~~fs~~~l~~-LGkIiaFDifInN~DR~PL~Wrn~GN~~Niml~~n~~~~~~  229 (342)
T d1cjaa_         152 LANQANILLMELVRGITLNKLTTTSA-PEVLTKSTMQQ-LGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSERGATVVP  229 (342)
T ss_dssp             HTTCSEEEEEECCCEEESTTCCSSSH-HHHSCHHHHHH-HHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESBTTCEEE
T ss_pred             HHhcccceeeeccCCccccccccccc-hhhhcHHHHHH-hhhHHHHHHHHcCCccccccccCCCCccceEEecCCcEEEE
Confidence              234679999999888755421110 00112222221 111222234667765556777743 79999998766 6667


Q ss_pred             ecccc
Q 003121          669 SDFGI  673 (846)
Q Consensus       669 ~DFGl  673 (846)
                      +|=|.
T Consensus       230 IDs~i  234 (342)
T d1cjaa_         230 IDSKI  234 (342)
T ss_dssp             CSCCC
T ss_pred             ecCCc
Confidence            77444


No 81 
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]}
Probab=36.19  E-value=66  Score=28.22  Aligned_cols=87  Identities=14%  Similarity=0.063  Sum_probs=53.8

Q ss_pred             HHHHHHhhcCCCCcEEEEEeeCCCcccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEEEeec
Q 003121           60 SVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTES  139 (846)
Q Consensus        60 ~AL~Wal~n~~~~~l~lvHV~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~C~~~~V~~e~~~~e~  139 (846)
                      .||..|+++   +.++.|.+..|...    ..    +   +.-        ..=..+-|.....-.++.|+..-   +-.
T Consensus        17 ~aL~~A~~~---~~vi~vfi~d~~~~----~~----~---~~r--------~~fl~~sL~~L~~~L~~~g~~L~---v~~   71 (170)
T d2j07a2          17 PALLEALAR---GPVVGLVVLDPNNL----KT----T---PRR--------RAWFLENVRALREAYRARGGALW---VLE   71 (170)
T ss_dssp             HHHHHHHTT---SCEEEEEEECHHHH----SS----C---HHH--------HHHHHHHHHHHHHHHHHTTCCEE---EEE
T ss_pred             HHHHHHHhc---CCEEEEEEEecccc----hh----h---HHH--------HHHHHHHHHHHHHhhhccccchh---hhh
Confidence            588888875   35778888876422    10    0   000        11112223444555566676633   334


Q ss_pred             CchhhHHHHHHHHcCCCEEEEccCCCChhhhhh
Q 003121          140 ESTEKGILELISHYGIRKLVMGAAADKHYKKKM  172 (846)
Q Consensus       140 ~d~~~~I~~~v~~~~i~~LVmGs~~~~~~~R~~  172 (846)
                      ||+.+.|.+++++++|+.|..- +.++.+.|..
T Consensus        72 G~~~~~l~~l~~~~~i~~V~~n-~~~~~~~~~r  103 (170)
T d2j07a2          72 GLPWEKVPEAARRLKAKAVYAL-TSHTPYGRYR  103 (170)
T ss_dssp             SCHHHHHHHHHHHTTCSEEEEE-CCCSHHHHHH
T ss_pred             hhHHHHHHHHHHHhhhhHHHhh-ccchhhhhHH
Confidence            7999999999999999999875 4566766543


No 82 
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}
Probab=30.06  E-value=45  Score=30.82  Aligned_cols=42  Identities=10%  Similarity=0.099  Sum_probs=28.6

Q ss_pred             HHHHHHHhhcCCeeeEEEeecCchhhHHHHHHHHcCCCEEEEcc
Q 003121          119 DMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGA  162 (846)
Q Consensus       119 ~~~~~~C~~~~V~~e~~~~e~~d~~~~I~~~v~~~~i~~LVmGs  162 (846)
                      .+++.+..+++.++..  ..+|-+..--+..+.+.|+|.+|+||
T Consensus       156 ~~l~~~~~~~~~~~~I--~vDGGIn~~~i~~l~~aGad~~V~Gs  197 (217)
T d2flia1         156 ATVAKWRDEKGLSFDI--EVDGGVDNKTIRACYEAGANVFVAGS  197 (217)
T ss_dssp             HHHHHHHHHTTCCCEE--EEESSCCTTTHHHHHHHTCCEEEESH
T ss_pred             HHHHHHHHhcCCCeEE--EEeCCCCHHHHHHHHHCCCCEEEEch
Confidence            4455566566665542  23555666667777799999999996


No 83 
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=26.71  E-value=74  Score=29.28  Aligned_cols=26  Identities=12%  Similarity=0.234  Sum_probs=21.3

Q ss_pred             ecCchhhHHHHHHHHcCCCEEEEccC
Q 003121          138 ESESTEKGILELISHYGIRKLVMGAA  163 (846)
Q Consensus       138 e~~d~~~~I~~~v~~~~i~~LVmGs~  163 (846)
                      .+|-+..--+..+.+.|+|.+|+||.
T Consensus       173 VDGGIn~~~i~~l~~aGad~~V~GS~  198 (220)
T d1h1ya_         173 VDGGLGPSTIDVAASAGANCIVAGSS  198 (220)
T ss_dssp             EESSCSTTTHHHHHHHTCCEEEESHH
T ss_pred             EEecCCHHHHHHHHHCCCCEEEECHH
Confidence            45677777788888999999999973


No 84 
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.87  E-value=1.1e+02  Score=26.90  Aligned_cols=91  Identities=13%  Similarity=0.118  Sum_probs=54.5

Q ss_pred             HHHHHHhhcCCCCcEEEEEeeCCCcccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeeeEEEeec
Q 003121           60 SVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRAEKLDTES  139 (846)
Q Consensus        60 ~AL~Wal~n~~~~~l~lvHV~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~C~~~~V~~e~~~~e~  139 (846)
                      .||..|.++   +.|+.|++..|.....    . ..+   +.    .    ..=..+-|.....-.++.|...  +++..
T Consensus        16 ~aL~~A~~~---~~vi~vfi~dp~~~~~----~-~~~---~~----~----~~fl~~sL~~L~~~L~~~g~~L--~v~~~   74 (185)
T d1u3da2          16 PALAAAVRA---GPVIALFVWAPEEEGH----Y-HPG---RV----S----RWWLKNSLAQLDSSLRSLGTCL--ITKRS   74 (185)
T ss_dssp             HHHHHHHHH---SCEEEEEEECGGGGTT----C-CCC---HH----H----HHHHHHHHHHHHHHHHHTTCCE--EEEEC
T ss_pred             HHHHHHHhC---CCEEEEEEEcchHhcc----c-ChH---HH----H----HHHHHHHHHHHHHHHHhcCCcc--eEeec
Confidence            478888775   3688899988753311    1 011   00    0    1112223334444445666553  23346


Q ss_pred             CchhhHHHHHHHHcCCCEEEEccCCCChhhhhh
Q 003121          140 ESTEKGILELISHYGIRKLVMGAAADKHYKKKM  172 (846)
Q Consensus       140 ~d~~~~I~~~v~~~~i~~LVmGs~~~~~~~R~~  172 (846)
                      |++.+.|.+++++++|+.|..-. .++.+.+..
T Consensus        75 g~~~~~l~~l~~~~~i~~v~~n~-~~~~~e~~r  106 (185)
T d1u3da2          75 TDSVASLLDVVKSTGASQIFFNH-LYDPLSLVR  106 (185)
T ss_dssp             SCHHHHHHHHHHHHTCCEEEEEC-CCSHHHHHH
T ss_pred             cchHHHHHHHHHhcCCceEEEec-cccHHHHHH
Confidence            89999999999999999988875 456665544


No 85 
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=23.82  E-value=76  Score=29.52  Aligned_cols=43  Identities=16%  Similarity=0.124  Sum_probs=29.3

Q ss_pred             HHHHHHHHhhcCCeeeEEEeecCchhhHHHHHHHHcCCCEEEEcc
Q 003121          118 LDMCLLICRQMGVRAEKLDTESESTEKGILELISHYGIRKLVMGA  162 (846)
Q Consensus       118 l~~~~~~C~~~~V~~e~~~~e~~d~~~~I~~~v~~~~i~~LVmGs  162 (846)
                      +.+++.+..+++.++...  .+|-+..--+..+.+.|+|.+|+||
T Consensus       166 I~~~~~~~~~~~~~~~I~--vDGGIn~~~i~~l~~~Gad~~V~GS  208 (230)
T d1rpxa_         166 ISDLRKICAERGLNPWIE--VDGGVGPKNAYKVIEAGANALVAGS  208 (230)
T ss_dssp             HHHHHHHHHHHTCCCEEE--EESSCCTTTHHHHHHHTCCEEEESH
T ss_pred             HHHHHHHHHhcCCceEEE--EECCcCHHHHHHHHHcCCCEEEECh
Confidence            345556666777665532  3556665566666799999999997


No 86 
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.59  E-value=1.5e+02  Score=27.28  Aligned_cols=94  Identities=21%  Similarity=0.252  Sum_probs=57.9

Q ss_pred             CEEEEEecCCccccHHHHHHHhhcCCCCcEEEEEeeCCCcccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003121           45 DKIYVAVAKQVKESKSVLLWALQNSGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLI  124 (846)
Q Consensus        45 ~~V~VAVD~s~~~S~~AL~Wal~n~~~~~l~lvHV~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  124 (846)
                      .+|+|-.-+. +.|..||-||+.+ +-..++|+++.+...- +++....+..                    ++   ..+
T Consensus         4 ~~V~vl~SGG-KDS~lAl~~a~~~-G~eV~~L~t~~~~~~~-s~~~h~~~~~--------------------ll---~~q   57 (226)
T d2d13a1           4 ADVAVLYSGG-KDSNYALYWALKS-GLRVRYLVSMVSENEE-SYMYHTPNVE--------------------LT---SLQ   57 (226)
T ss_dssp             CEEEEECCSS-HHHHHHHHHHHHT-TCEEEEEEEEECCC----------CCT--------------------TH---HHH
T ss_pred             eeEEEEecCc-HHHHHHHHHHHHc-CCeeEEEEEEecCCCC-cCcccCCCHH--------------------HH---HHH
Confidence            4788899998 8999999999886 3456778999876421 1111111111                    00   112


Q ss_pred             HhhcCCeeeEEEe--ecCchhhHHHHHHHHcCCCEEEEccCC
Q 003121          125 CRQMGVRAEKLDT--ESESTEKGILELISHYGIRKLVMGAAA  164 (846)
Q Consensus       125 C~~~~V~~e~~~~--e~~d~~~~I~~~v~~~~i~~LVmGs~~  164 (846)
                      +...|+....+.+  +.++-.+.+.++.++.+++.+|-|.-.
T Consensus        58 AealgiPl~~~~~~~~~e~~~~~l~~~l~~~~v~~vv~Gdi~   99 (226)
T d2d13a1          58 ARALGIPIIKGFTKGEKEKEVEDLKNVLEGLKVDGIVAGALA   99 (226)
T ss_dssp             HHHHTCCEEEEEC--CTTSHHHHHHHHHHTBCCSEEECCCSS
T ss_pred             HHhcCCCceEEecCCcchHHHHHHHHHHHhcCccceEeccee
Confidence            2344555443333  235666778999999999999999743


No 87 
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=22.55  E-value=64  Score=28.64  Aligned_cols=52  Identities=19%  Similarity=0.292  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHhhcCCeeeEEEeecCchhhHHHHHHHH---cCCCEEEEccCCCCh
Q 003121          116 NHLDMCLLICRQMGVRAEKLDTESESTEKGILELISH---YGIRKLVMGAAADKH  167 (846)
Q Consensus       116 ~ll~~~~~~C~~~~V~~e~~~~e~~d~~~~I~~~v~~---~~i~~LVmGs~~~~~  167 (846)
                      .+.+++...|...||.++..+...-.--+-+.+++++   .+++.+|.|+.+.++
T Consensus        14 ~~~~~a~~~L~~~gi~~~~~v~saHr~p~rl~~~~~~~~~~~~~viIa~AG~aa~   68 (169)
T d1o4va_          14 PVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAH   68 (169)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCC
T ss_pred             HHHHHHHHHHHHcCCcEEEEEeeeecCHHHHHHHHHHHHhcCCeEEEEeecCCcC
Confidence            4567788899999999998886554444556677665   478888888754444


No 88 
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.28  E-value=55  Score=28.41  Aligned_cols=48  Identities=6%  Similarity=0.084  Sum_probs=29.2

Q ss_pred             hHHHHHHHHcCCCEEEEccCCCChhhhhhhhcchhhHHHHhccCCCccEEEEEe
Q 003121          144 KGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQAPASCHIWFIC  197 (846)
Q Consensus       144 ~~I~~~v~~~~i~~LVmGs~~~~~~~R~~~~~~~~~a~~v~~sa~~~C~v~~i~  197 (846)
                      +.|.++++++++++||||.   |.-+|....+   ++..+......-|.|.++.
T Consensus        49 ~~l~~li~k~~p~vIaIGN---gTasre~~~~---v~~l~~~~~~~~i~~~iV~   96 (149)
T d3bzka5          49 AVLAALCAKHQVELIAIGN---GTASRETDKL---AGELIKKYPGMKLTKIMVS   96 (149)
T ss_dssp             HHHHHHHHHTTCCEEEEES---STTHHHHHHH---HHHHHHHCGGGCCEEEEEC
T ss_pred             HHHHHHHHHcCCeEEEECC---CccHHHHHHH---HHHHHHhCCCCCcEEEEEe
Confidence            3477889999999999995   3345555422   3333333333456665554


No 89 
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]}
Probab=20.64  E-value=83  Score=29.57  Aligned_cols=118  Identities=11%  Similarity=-0.013  Sum_probs=66.5

Q ss_pred             cccHHHHHHHhhc---CCCCcEEEEEeeCCCcccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCee
Q 003121           56 KESKSVLLWALQN---SGGKRICIIHVHTPAQMIPVMGTKFPASSLEEEKVQAYREIERQDMHNHLDMCLLICRQMGVRA  132 (846)
Q Consensus        56 ~~S~~AL~Wal~n---~~~~~l~lvHV~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~C~~~~V~~  132 (846)
                      ....+||+-||.-   ..+.+|+++.+-++.                              +.+.|.++..+..++.|.+
T Consensus        37 p~D~~AlE~Al~lke~~~g~~Vtvls~Gp~~------------------------------a~~~lr~alAmGaD~avli   86 (246)
T d1efpb_          37 PFDEIAVEEAIRLKEKGQAEEIIAVSIGVKQ------------------------------AAETLRTALAMGADRAILV   86 (246)
T ss_dssp             HHHHHHHHHHHHHHTTTSCSEEEEEEEESGG------------------------------GHHHHHHHHHHTCSEEEEE
T ss_pred             ccCHHHHHHHHHHhhcCCCeEEEEEEecCcc------------------------------hHHHHHHHHhhcCChheEE
Confidence            4677799988774   345578888876431                              2345666666666554433


Q ss_pred             eE--EEeecCc---hhhHHHHHHHHcCCCEEEEccCCCChhhhhhhhcchhhHHHHhcc-CCCccEEEEEecCeeeeecc
Q 003121          133 EK--LDTESES---TEKGILELISHYGIRKLVMGAAADKHYKKKMMDLKSKKAISVRQQ-APASCHIWFICNGNLIYTRE  206 (846)
Q Consensus       133 e~--~~~e~~d---~~~~I~~~v~~~~i~~LVmGs~~~~~~~R~~~~~~~~~a~~v~~s-a~~~C~v~~i~~gk~~~~r~  206 (846)
                      ..  ....+.|   .+..|-.++++.+.|+|+.|-.+-....--.+   ..+|. .|+. .-.++.-.=+.+|++.-+|+
T Consensus        87 ~~~~~~~~~~d~~ata~~la~~~~~~~~DLIl~G~~s~D~~tgqvg---~~lAe-~Lg~P~vt~v~~i~~~~~~i~v~R~  162 (246)
T d1efpb_          87 VAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATG---QMLAA-ILGWAQATFASKVEIEGAKAKVTRE  162 (246)
T ss_dssp             ECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHH---HHHHH-HHTCEEEEEEEEEEECSSEEEEEEE
T ss_pred             eeccccccccCHHHHHHHHHHHHhhcCCCEEEEEeeeccccccchh---HHHHH-HhhccceeEEEEEEEcCCEEEEEEE
Confidence            11  1112223   45689999999999999999766333221111   22332 2222 11122222355788888886


Q ss_pred             C
Q 003121          207 G  207 (846)
Q Consensus       207 ~  207 (846)
                      .
T Consensus       163 ~  163 (246)
T d1efpb_         163 V  163 (246)
T ss_dssp             E
T ss_pred             c
Confidence            3


Done!