Query 003122
Match_columns 846
No_of_seqs 806 out of 4574
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 17:26:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-86 2.2E-91 784.5 73.1 709 97-835 56-774 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 4.7E-78 1E-82 710.9 75.5 667 124-820 51-719 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2.1E-68 4.5E-73 613.2 70.1 545 126-688 372-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1E-66 2.2E-71 599.3 72.7 548 191-758 366-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 7E-64 1.5E-68 576.3 51.0 521 262-836 84-612 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.7E-62 3.7E-67 564.8 55.6 511 124-652 87-610 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-41 3.6E-46 411.8 91.3 666 129-819 198-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.1E-40 1.1E-44 398.7 92.7 673 126-823 161-868 (899)
9 PRK11447 cellulose synthase su 100.0 1.6E-30 3.6E-35 314.1 78.9 638 129-790 33-745 (1157)
10 PRK11447 cellulose synthase su 100.0 2.3E-29 5.1E-34 304.2 78.2 639 163-820 31-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 4.2E-27 9.1E-32 270.4 73.4 618 132-793 52-745 (987)
12 PRK09782 bacteriophage N4 rece 100.0 2E-25 4.4E-30 256.5 75.0 615 168-825 52-744 (987)
13 KOG4626 O-linked N-acetylgluco 100.0 2.8E-27 6E-32 238.9 38.7 379 408-803 117-501 (966)
14 KOG2002 TPR-containing nuclear 100.0 1.5E-23 3.2E-28 223.9 64.9 649 124-791 41-748 (1018)
15 KOG4626 O-linked N-acetylgluco 100.0 1.4E-26 3E-31 233.9 37.9 388 374-777 118-510 (966)
16 KOG2002 TPR-containing nuclear 99.9 4.2E-21 9.1E-26 205.4 64.0 645 160-823 41-747 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.9E-20 4.1E-25 213.0 54.5 430 301-786 128-571 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 6.6E-20 1.4E-24 208.6 52.0 256 559-824 306-574 (615)
19 KOG2076 RNA polymerase III tra 99.9 2E-16 4.4E-21 169.0 64.6 666 131-817 146-891 (895)
20 PRK15174 Vi polysaccharide exp 99.9 4.1E-19 8.9E-24 201.0 46.4 330 376-750 46-380 (656)
21 PRK10049 pgaA outer membrane p 99.9 1.6E-18 3.5E-23 200.6 52.2 435 299-798 14-466 (765)
22 PRK11788 tetratricopeptide rep 99.9 3.7E-20 8E-25 200.3 36.3 276 511-793 68-354 (389)
23 KOG0495 HAT repeat protein [RN 99.9 9.2E-16 2E-20 157.4 65.1 612 139-792 266-884 (913)
24 PRK10049 pgaA outer membrane p 99.9 2.4E-18 5.3E-23 199.2 52.0 190 629-823 249-458 (765)
25 KOG0495 HAT repeat protein [RN 99.9 1.5E-15 3.3E-20 155.8 65.2 611 173-823 264-882 (913)
26 PRK11788 tetratricopeptide rep 99.9 9.1E-20 2E-24 197.3 36.9 304 166-478 41-354 (389)
27 PRK15174 Vi polysaccharide exp 99.9 1.6E-18 3.4E-23 196.2 45.8 330 447-786 47-381 (656)
28 PRK14574 hmsH outer membrane p 99.9 4.5E-17 9.8E-22 184.2 55.7 455 275-765 44-525 (822)
29 KOG2076 RNA polymerase III tra 99.9 2.3E-15 5E-20 161.0 58.8 641 163-823 142-851 (895)
30 PRK14574 hmsH outer membrane p 99.9 4.3E-16 9.3E-21 176.3 55.9 461 302-798 36-523 (822)
31 KOG2003 TPR repeat-containing 99.9 2E-17 4.3E-22 161.9 38.2 503 268-820 204-721 (840)
32 KOG4422 Uncharacterized conser 99.8 3.8E-14 8.3E-19 138.5 44.0 299 134-437 125-463 (625)
33 KOG1915 Cell cycle control pro 99.8 4.9E-13 1.1E-17 132.6 51.8 497 302-818 75-622 (677)
34 KOG2003 TPR repeat-containing 99.8 1.2E-15 2.6E-20 149.6 33.2 175 521-701 533-708 (840)
35 KOG1173 Anaphase-promoting com 99.8 1.6E-14 3.4E-19 146.8 39.9 507 264-801 15-531 (611)
36 KOG4422 Uncharacterized conser 99.8 8.2E-14 1.8E-18 136.3 43.1 431 196-682 117-591 (625)
37 KOG1126 DNA-binding cell divis 99.7 4E-16 8.7E-21 161.8 25.2 281 492-786 334-620 (638)
38 KOG0547 Translocase of outer m 99.7 2.7E-14 5.9E-19 142.2 34.9 234 559-802 338-580 (606)
39 KOG0547 Translocase of outer m 99.7 3.7E-14 8.1E-19 141.2 34.8 412 301-750 116-565 (606)
40 KOG1126 DNA-binding cell divis 99.7 2.8E-15 6E-20 155.7 24.0 285 527-825 334-624 (638)
41 KOG1173 Anaphase-promoting com 99.7 3.7E-13 8.1E-18 137.0 38.5 285 473-765 240-530 (611)
42 KOG2047 mRNA splicing factor [ 99.7 2.8E-10 6.2E-15 117.6 59.4 491 302-820 104-650 (835)
43 KOG1915 Cell cycle control pro 99.7 3E-11 6.4E-16 120.2 49.6 431 171-645 84-535 (677)
44 KOG1155 Anaphase-promoting com 99.7 1.2E-12 2.7E-17 129.8 39.8 365 403-785 160-535 (559)
45 PF13429 TPR_15: Tetratricopep 99.7 1.9E-16 4.1E-21 161.8 12.6 261 517-785 13-276 (280)
46 KOG2047 mRNA splicing factor [ 99.7 4.3E-10 9.3E-15 116.3 57.6 348 371-744 348-716 (835)
47 KOG1155 Anaphase-promoting com 99.7 2.3E-12 5.1E-17 127.8 39.4 256 416-680 236-494 (559)
48 PRK10747 putative protoheme IX 99.7 2.2E-13 4.8E-18 145.5 35.1 257 519-786 125-390 (398)
49 KOG4318 Bicoid mRNA stability 99.7 3.4E-12 7.5E-17 136.2 41.2 62 760-824 710-774 (1088)
50 TIGR00540 hemY_coli hemY prote 99.7 4.8E-13 1E-17 143.9 35.4 258 519-783 125-396 (409)
51 TIGR00540 hemY_coli hemY prote 99.6 5.7E-13 1.2E-17 143.3 35.1 294 523-822 95-400 (409)
52 KOG4318 Bicoid mRNA stability 99.6 8.7E-12 1.9E-16 133.1 42.5 274 181-492 11-286 (1088)
53 PF13429 TPR_15: Tetratricopep 99.6 1.3E-15 2.9E-20 155.5 12.5 262 552-821 13-277 (280)
54 KOG3785 Uncharacterized conser 99.6 8.6E-11 1.9E-15 112.6 42.5 500 277-822 34-550 (557)
55 PRK10747 putative protoheme IX 99.6 1.4E-12 3E-17 139.4 34.5 285 524-822 96-391 (398)
56 COG2956 Predicted N-acetylgluc 99.6 1.6E-12 3.4E-17 123.2 30.2 293 525-824 48-347 (389)
57 KOG4162 Predicted calmodulin-b 99.6 4.7E-09 1E-13 111.6 58.5 421 403-831 319-793 (799)
58 KOG4162 Predicted calmodulin-b 99.6 2.3E-10 5E-15 121.3 46.2 510 242-785 239-782 (799)
59 COG3071 HemY Uncharacterized e 99.6 9.1E-12 2E-16 122.2 33.2 270 513-791 119-395 (400)
60 COG2956 Predicted N-acetylgluc 99.5 2.3E-11 5E-16 115.4 30.5 290 173-471 48-347 (389)
61 KOG3785 Uncharacterized conser 99.5 7.8E-10 1.7E-14 106.2 40.8 457 131-656 29-498 (557)
62 KOG1174 Anaphase-promoting com 99.5 6.9E-10 1.5E-14 108.8 39.9 275 507-793 227-505 (564)
63 KOG1127 TPR repeat-containing 99.5 3.4E-09 7.4E-14 115.1 48.1 591 211-821 474-1138(1238)
64 KOG1156 N-terminal acetyltrans 99.5 3.5E-09 7.7E-14 110.2 46.3 154 277-436 19-172 (700)
65 PRK12370 invasion protein regu 99.5 5.6E-12 1.2E-16 140.9 27.7 182 596-785 318-501 (553)
66 KOG1129 TPR repeat-containing 99.5 2E-12 4.4E-17 122.3 20.1 238 546-792 222-462 (478)
67 KOG1156 N-terminal acetyltrans 99.5 3.5E-09 7.6E-14 110.2 44.9 457 206-680 18-510 (700)
68 KOG1129 TPR repeat-containing 99.5 2.2E-12 4.7E-17 122.1 19.6 235 516-758 227-463 (478)
69 COG3071 HemY Uncharacterized e 99.5 3.5E-10 7.6E-15 111.2 34.4 294 349-680 96-389 (400)
70 KOG1127 TPR repeat-containing 99.5 1.7E-08 3.7E-13 109.9 50.1 637 138-793 472-1180(1238)
71 KOG0985 Vesicle coat protein c 99.5 5.3E-08 1.1E-12 105.8 52.3 572 122-750 604-1307(1666)
72 KOG3617 WD40 and TPR repeat-co 99.5 1.8E-08 3.9E-13 107.1 47.2 349 241-670 811-1189(1416)
73 PRK12370 invasion protein regu 99.5 3.2E-11 7E-16 134.8 28.7 249 527-786 276-535 (553)
74 KOG1174 Anaphase-promoting com 99.4 3.2E-09 6.9E-14 104.3 36.0 295 522-826 206-505 (564)
75 KOG3616 Selective LIM binding 99.4 1.7E-07 3.7E-12 98.6 50.8 541 168-783 714-1351(1636)
76 KOG0985 Vesicle coat protein c 99.4 8.9E-07 1.9E-11 96.7 57.4 589 163-804 609-1325(1666)
77 TIGR02521 type_IV_pilW type IV 99.4 9.2E-11 2E-15 116.9 26.4 198 582-784 31-230 (234)
78 TIGR02521 type_IV_pilW type IV 99.4 1E-10 2.2E-15 116.6 26.1 200 617-821 31-232 (234)
79 KOG3616 Selective LIM binding 99.4 2.6E-08 5.7E-13 104.4 43.5 363 307-717 739-1185(1636)
80 KOG1840 Kinesin light chain [C 99.4 1.7E-10 3.7E-15 122.2 27.7 100 722-821 367-479 (508)
81 KOG3617 WD40 and TPR repeat-co 99.4 1.7E-07 3.7E-12 99.9 48.0 136 136-291 740-884 (1416)
82 KOG0548 Molecular co-chaperone 99.4 2.6E-09 5.7E-14 109.1 32.9 219 551-785 228-454 (539)
83 KOG1840 Kinesin light chain [C 99.4 2.5E-10 5.5E-15 120.9 26.7 239 547-785 199-478 (508)
84 PF12569 NARP1: NMDA receptor- 99.3 7.9E-08 1.7E-12 103.7 43.6 258 273-542 12-292 (517)
85 COG3063 PilF Tfp pilus assembl 99.3 6.9E-10 1.5E-14 101.0 22.8 198 619-823 37-238 (250)
86 KOG2376 Signal recognition par 99.3 2.1E-07 4.5E-12 96.3 42.7 149 562-714 356-518 (652)
87 KOG0548 Molecular co-chaperone 99.3 1.1E-08 2.5E-13 104.5 33.4 250 515-782 227-485 (539)
88 PRK11189 lipoprotein NlpI; Pro 99.3 2E-09 4.4E-14 110.0 28.5 93 550-645 67-160 (296)
89 PRK11189 lipoprotein NlpI; Pro 99.3 1.5E-09 3.2E-14 111.0 27.0 226 560-796 39-274 (296)
90 PF12569 NARP1: NMDA receptor- 99.3 6.9E-08 1.5E-12 104.1 40.5 292 131-435 11-333 (517)
91 COG3063 PilF Tfp pilus assembl 99.3 2.9E-09 6.2E-14 97.0 24.5 203 550-758 38-241 (250)
92 KOG2376 Signal recognition par 99.3 5.2E-07 1.1E-11 93.5 43.7 456 271-780 18-514 (652)
93 KOG0624 dsRNA-activated protei 99.3 3.1E-08 6.7E-13 95.1 31.6 191 555-750 163-369 (504)
94 KOG1125 TPR repeat-containing 99.2 8.2E-10 1.8E-14 113.7 20.4 243 556-809 294-559 (579)
95 KOG0624 dsRNA-activated protei 99.2 1.2E-07 2.7E-12 91.1 29.4 309 476-793 37-375 (504)
96 KOG4340 Uncharacterized conser 99.1 1.8E-07 3.9E-12 88.2 27.7 431 265-760 10-450 (459)
97 PF13041 PPR_2: PPR repeat fam 99.1 2.3E-10 4.9E-15 81.1 6.7 49 193-241 1-49 (50)
98 cd05804 StaR_like StaR_like; a 99.1 5.1E-07 1.1E-11 96.3 35.4 262 521-786 52-336 (355)
99 PF13041 PPR_2: PPR repeat fam 99.1 3.1E-10 6.8E-15 80.4 6.8 49 228-276 1-49 (50)
100 KOG1125 TPR repeat-containing 99.0 2.3E-08 5.1E-13 103.2 20.7 247 522-777 295-562 (579)
101 PLN02789 farnesyltranstransfer 99.0 1.8E-07 4E-12 95.2 26.7 204 559-769 49-267 (320)
102 KOG1128 Uncharacterized conser 99.0 1.2E-08 2.7E-13 107.8 18.3 261 544-825 395-659 (777)
103 PLN02789 farnesyltranstransfer 99.0 1.7E-07 3.7E-12 95.4 26.0 204 592-804 47-267 (320)
104 PRK04841 transcriptional regul 99.0 1.6E-06 3.5E-11 105.0 39.2 302 486-787 418-761 (903)
105 cd05804 StaR_like StaR_like; a 99.0 2.2E-06 4.8E-11 91.4 35.8 306 408-750 7-335 (355)
106 KOG1128 Uncharacterized conser 99.0 4.6E-08 1E-12 103.6 20.9 220 509-750 395-615 (777)
107 KOG4340 Uncharacterized conser 99.0 2.9E-06 6.2E-11 80.3 29.6 194 163-368 13-209 (459)
108 PF04733 Coatomer_E: Coatomer 99.0 4.7E-08 1E-12 98.2 18.7 154 556-719 111-268 (290)
109 KOG1914 mRNA cleavage and poly 98.9 0.00012 2.5E-09 75.7 41.6 212 598-812 309-530 (656)
110 PRK10370 formate-dependent nit 98.9 1.4E-07 3.1E-12 89.4 19.4 152 625-793 24-179 (198)
111 TIGR03302 OM_YfiO outer membra 98.9 1.6E-07 3.4E-12 93.4 19.8 183 579-786 30-232 (235)
112 PRK15179 Vi polysaccharide bio 98.9 5E-07 1.1E-11 101.4 25.4 133 614-750 83-216 (694)
113 PRK15359 type III secretion sy 98.9 6.8E-08 1.5E-12 86.6 14.7 96 657-756 29-124 (144)
114 COG5010 TadD Flp pilus assembl 98.9 4.4E-07 9.5E-12 85.1 20.2 155 656-815 70-225 (257)
115 PRK04841 transcriptional regul 98.9 7.9E-06 1.7E-10 99.0 37.4 335 417-751 384-760 (903)
116 KOG2053 Mitochondrial inherita 98.8 0.00041 9E-09 76.2 46.8 211 117-332 34-258 (932)
117 PRK15179 Vi polysaccharide bio 98.8 9.2E-07 2E-11 99.3 24.7 131 579-714 83-215 (694)
118 PF04733 Coatomer_E: Coatomer 98.8 3.8E-07 8.1E-12 91.8 19.3 222 518-756 41-268 (290)
119 KOG3060 Uncharacterized conser 98.8 3.6E-06 7.8E-11 78.2 23.3 159 621-785 56-219 (289)
120 PRK15359 type III secretion sy 98.8 3E-07 6.4E-12 82.5 15.8 113 672-793 13-126 (144)
121 KOG1914 mRNA cleavage and poly 98.8 0.0004 8.7E-09 71.9 40.3 78 263-346 18-95 (656)
122 KOG1070 rRNA processing protei 98.8 4.4E-06 9.4E-11 94.9 27.0 239 579-823 1455-1702(1710)
123 TIGR03302 OM_YfiO outer membra 98.8 6.6E-07 1.4E-11 88.9 19.2 184 616-820 32-231 (235)
124 KOG2053 Mitochondrial inherita 98.7 0.00083 1.8E-08 74.0 52.3 537 172-749 21-606 (932)
125 COG4783 Putative Zn-dependent 98.7 1.1E-05 2.5E-10 82.4 26.8 205 562-792 252-459 (484)
126 COG5010 TadD Flp pilus assembl 98.7 3.5E-06 7.7E-11 79.2 21.0 164 581-749 66-229 (257)
127 PRK14720 transcript cleavage f 98.7 6.8E-06 1.5E-10 93.1 26.6 238 476-768 30-268 (906)
128 KOG1070 rRNA processing protei 98.7 1.1E-05 2.4E-10 91.7 27.5 238 544-785 1455-1699(1710)
129 PRK10370 formate-dependent nit 98.7 2.5E-06 5.4E-11 81.0 19.3 121 630-755 52-175 (198)
130 TIGR02552 LcrH_SycD type III s 98.7 7E-07 1.5E-11 79.9 14.4 114 674-793 5-119 (135)
131 PRK14720 transcript cleavage f 98.6 5.4E-06 1.2E-10 93.9 22.8 229 546-815 30-281 (906)
132 KOG3060 Uncharacterized conser 98.6 2.6E-05 5.7E-10 72.6 22.7 171 585-761 55-229 (289)
133 KOG3081 Vesicle coat complex C 98.6 7.1E-05 1.5E-09 70.4 24.8 156 553-719 114-274 (299)
134 PRK15363 pathogenicity island 98.5 4.2E-06 9E-11 73.3 13.9 98 686-786 34-132 (157)
135 TIGR02552 LcrH_SycD type III s 98.5 4E-06 8.7E-11 74.9 14.5 116 639-760 5-121 (135)
136 COG4783 Putative Zn-dependent 98.5 3.8E-05 8.2E-10 78.7 22.4 219 597-824 252-475 (484)
137 PF12854 PPR_1: PPR repeat 98.5 2.5E-07 5.5E-12 58.5 4.0 32 190-221 2-33 (34)
138 PF12854 PPR_1: PPR repeat 98.4 3.1E-07 6.7E-12 58.1 4.2 32 295-326 2-33 (34)
139 KOG0553 TPR repeat-containing 98.4 2.5E-06 5.5E-11 81.7 11.3 100 661-764 90-189 (304)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.2E-05 2.6E-10 83.6 17.1 124 654-784 171-295 (395)
141 KOG3081 Vesicle coat complex C 98.4 0.00026 5.7E-09 66.7 23.7 117 273-401 116-236 (299)
142 KOG0553 TPR repeat-containing 98.4 5.7E-06 1.2E-10 79.3 12.8 104 694-802 88-192 (304)
143 PF09976 TPR_21: Tetratricopep 98.3 3E-05 6.6E-10 69.9 15.1 61 619-682 14-78 (145)
144 PRK15363 pathogenicity island 98.3 8.6E-05 1.9E-09 65.2 16.7 98 652-751 35-132 (157)
145 KOG1130 Predicted G-alpha GTPa 98.2 9.2E-06 2E-10 80.4 11.3 264 522-786 27-344 (639)
146 PF09976 TPR_21: Tetratricopep 98.2 5.6E-05 1.2E-09 68.1 15.9 118 664-783 23-144 (145)
147 KOG0550 Molecular chaperone (D 98.2 0.00025 5.4E-09 70.9 19.6 157 627-786 179-350 (486)
148 COG3898 Uncharacterized membra 98.2 0.01 2.2E-07 59.3 31.2 254 523-793 131-399 (531)
149 COG4700 Uncharacterized protei 98.2 0.00033 7.1E-09 62.1 18.1 135 649-785 86-221 (251)
150 PLN03088 SGT1, suppressor of 98.2 3.3E-05 7E-10 81.0 14.3 89 694-785 9-98 (356)
151 KOG0550 Molecular chaperone (D 98.1 0.00064 1.4E-08 68.1 21.8 157 590-750 177-349 (486)
152 PRK02603 photosystem I assembl 98.1 7.8E-05 1.7E-09 69.5 14.7 84 619-703 37-122 (172)
153 TIGR02795 tol_pal_ybgF tol-pal 98.1 6.1E-05 1.3E-09 65.5 12.8 96 689-786 4-105 (119)
154 COG4235 Cytochrome c biogenesi 98.1 0.0001 2.2E-09 71.5 15.1 110 673-786 143-256 (287)
155 PF12895 Apc3: Anaphase-promot 98.1 9.3E-06 2E-10 65.2 6.6 80 700-782 2-83 (84)
156 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00016 3.4E-09 75.4 17.0 121 588-714 175-295 (395)
157 PF07079 DUF1347: Protein of u 98.1 0.02 4.3E-07 58.6 44.0 140 309-453 15-178 (549)
158 PLN03088 SGT1, suppressor of 98.1 6.9E-05 1.5E-09 78.6 14.3 97 658-758 8-104 (356)
159 PRK10153 DNA-binding transcrip 98.0 0.00023 4.9E-09 78.0 17.8 70 721-794 419-488 (517)
160 cd00189 TPR Tetratricopeptide 98.0 7.4E-05 1.6E-09 61.7 11.0 93 690-785 3-96 (100)
161 COG4700 Uncharacterized protei 98.0 0.0012 2.6E-08 58.6 17.8 129 683-815 85-216 (251)
162 cd00189 TPR Tetratricopeptide 98.0 8.4E-05 1.8E-09 61.3 10.9 92 657-750 5-96 (100)
163 PF12895 Apc3: Anaphase-promot 98.0 1.6E-05 3.4E-10 63.9 5.9 81 665-747 2-83 (84)
164 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00012 2.6E-09 63.6 12.0 102 654-757 4-109 (119)
165 CHL00033 ycf3 photosystem I as 98.0 0.00012 2.5E-09 68.1 12.6 94 688-783 36-139 (168)
166 KOG2041 WD40 repeat protein [G 97.9 0.036 7.9E-07 59.5 31.1 380 227-678 689-1083(1189)
167 PRK02603 photosystem I assembl 97.9 0.00021 4.6E-09 66.6 13.7 87 653-740 36-124 (172)
168 KOG2041 WD40 repeat protein [G 97.9 0.039 8.5E-07 59.3 30.1 203 157-398 689-904 (1189)
169 PF13414 TPR_11: TPR repeat; P 97.9 5.3E-05 1.1E-09 58.1 7.2 63 721-785 2-66 (69)
170 CHL00033 ycf3 photosystem I as 97.9 0.00028 6E-09 65.6 13.3 91 655-746 38-137 (168)
171 PF14938 SNAP: Soluble NSF att 97.9 0.0013 2.9E-08 66.8 19.2 92 624-716 121-225 (282)
172 PF13432 TPR_16: Tetratricopep 97.9 6E-05 1.3E-09 57.0 7.0 56 728-785 3-59 (65)
173 PF13432 TPR_16: Tetratricopep 97.8 8.5E-05 1.8E-09 56.1 7.7 63 692-757 2-64 (65)
174 PRK10153 DNA-binding transcrip 97.8 0.00071 1.5E-08 74.1 17.4 142 614-761 334-490 (517)
175 PF12688 TPR_5: Tetratrico pep 97.8 0.00048 1E-08 58.6 12.4 93 690-784 4-102 (120)
176 PRK10866 outer membrane biogen 97.8 0.0031 6.7E-08 62.0 19.8 178 581-783 31-238 (243)
177 KOG1130 Predicted G-alpha GTPa 97.8 0.0011 2.3E-08 66.3 15.9 130 584-713 197-341 (639)
178 PF13414 TPR_11: TPR repeat; P 97.8 7.1E-05 1.5E-09 57.4 6.4 67 686-755 2-69 (69)
179 TIGR00756 PPR pentatricopeptid 97.7 7.5E-05 1.6E-09 48.0 4.4 33 197-229 2-34 (35)
180 PF14938 SNAP: Soluble NSF att 97.7 0.0032 6.9E-08 64.0 18.5 89 590-680 43-143 (282)
181 PRK11906 transcriptional regul 97.7 0.0019 4.1E-08 67.0 16.6 147 632-783 273-433 (458)
182 TIGR00756 PPR pentatricopeptid 97.6 9.1E-05 2E-09 47.6 4.4 33 232-264 2-34 (35)
183 PF07079 DUF1347: Protein of u 97.6 0.11 2.3E-06 53.6 47.7 121 592-715 389-523 (549)
184 COG0457 NrfG FOG: TPR repeat [ 97.6 0.082 1.8E-06 52.2 29.8 223 561-786 37-265 (291)
185 PF05843 Suf: Suppressor of fo 97.6 0.001 2.2E-08 67.3 13.9 135 618-756 2-139 (280)
186 PRK10803 tol-pal system protei 97.6 0.0012 2.5E-08 65.4 13.7 91 698-792 154-250 (263)
187 COG4235 Cytochrome c biogenesi 97.6 0.0024 5.1E-08 62.3 15.0 112 649-764 153-267 (287)
188 PRK10866 outer membrane biogen 97.6 0.039 8.4E-07 54.3 23.7 64 162-227 34-101 (243)
189 PRK15331 chaperone protein Sic 97.6 0.0029 6.3E-08 56.0 13.8 93 690-785 40-133 (165)
190 PF13812 PPR_3: Pentatricopept 97.6 0.00012 2.7E-09 46.6 4.0 31 197-227 3-33 (34)
191 PF13812 PPR_3: Pentatricopept 97.5 0.00014 3.1E-09 46.3 4.1 31 232-262 3-33 (34)
192 PF14559 TPR_19: Tetratricopep 97.5 0.00021 4.6E-09 54.6 5.7 49 735-785 4-53 (68)
193 PF14559 TPR_19: Tetratricopep 97.5 0.00031 6.7E-09 53.6 6.5 63 698-763 2-64 (68)
194 PRK10803 tol-pal system protei 97.5 0.0015 3.3E-08 64.7 12.7 94 663-758 154-251 (263)
195 PF10037 MRP-S27: Mitochondria 97.5 0.0027 5.9E-08 66.6 15.0 123 191-313 62-186 (429)
196 PF12688 TPR_5: Tetratrico pep 97.5 0.0042 9.1E-08 52.9 13.4 58 623-680 7-66 (120)
197 PF13371 TPR_9: Tetratricopept 97.5 0.00066 1.4E-08 52.7 8.0 61 729-793 2-63 (73)
198 PF13525 YfiO: Outer membrane 97.4 0.02 4.3E-07 54.9 19.3 167 587-776 10-197 (203)
199 PF08579 RPM2: Mitochondrial r 97.4 0.0025 5.3E-08 51.9 10.6 76 200-275 30-114 (120)
200 PF08579 RPM2: Mitochondrial r 97.4 0.0022 4.9E-08 52.2 10.2 81 232-312 27-116 (120)
201 PF10037 MRP-S27: Mitochondria 97.4 0.0029 6.2E-08 66.4 13.7 122 369-490 63-186 (429)
202 PF05843 Suf: Suppressor of fo 97.4 0.0048 1E-07 62.5 14.9 135 583-719 2-139 (280)
203 PF13525 YfiO: Outer membrane 97.3 0.031 6.6E-07 53.6 18.9 61 164-224 9-71 (203)
204 PF01535 PPR: PPR repeat; Int 97.3 0.00026 5.6E-09 43.9 3.1 26 198-223 3-28 (31)
205 PRK15331 chaperone protein Sic 97.2 0.016 3.4E-07 51.5 14.5 92 657-750 42-133 (165)
206 PF13371 TPR_9: Tetratricopept 97.2 0.0013 2.9E-08 50.9 7.2 62 695-759 3-64 (73)
207 KOG2796 Uncharacterized conser 97.2 0.11 2.3E-06 49.5 20.3 136 619-757 179-319 (366)
208 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0015 3.2E-08 67.7 9.1 63 721-785 74-140 (453)
209 PF01535 PPR: PPR repeat; Int 97.2 0.00046 1E-08 42.8 3.5 27 233-259 3-29 (31)
210 PRK11906 transcriptional regul 97.2 0.012 2.6E-07 61.3 15.2 118 668-791 274-404 (458)
211 COG0457 NrfG FOG: TPR repeat [ 97.2 0.28 6.1E-06 48.3 32.3 226 525-756 36-268 (291)
212 PF03704 BTAD: Bacterial trans 97.2 0.018 3.8E-07 52.0 14.9 116 661-794 15-138 (146)
213 PF13424 TPR_12: Tetratricopep 97.1 0.0013 2.9E-08 51.7 6.5 64 722-785 5-74 (78)
214 PF06239 ECSIT: Evolutionarily 97.1 0.012 2.5E-07 54.6 12.9 30 247-276 120-149 (228)
215 PF13512 TPR_18: Tetratricopep 97.1 0.012 2.5E-07 51.1 12.1 85 685-771 8-98 (142)
216 KOG0543 FKBP-type peptidyl-pro 97.1 0.0096 2.1E-07 60.4 13.1 93 690-785 260-354 (397)
217 KOG2610 Uncharacterized conser 97.1 0.037 7.9E-07 54.3 16.3 116 630-747 116-234 (491)
218 KOG1538 Uncharacterized conser 97.0 0.07 1.5E-06 56.9 19.3 25 370-394 554-578 (1081)
219 KOG1538 Uncharacterized conser 97.0 0.16 3.4E-06 54.4 21.5 90 406-500 555-655 (1081)
220 KOG4555 TPR repeat-containing 97.0 0.032 6.9E-07 46.6 13.1 91 694-787 50-145 (175)
221 PF04840 Vps16_C: Vps16, C-ter 97.0 0.58 1.3E-05 48.0 28.1 107 621-747 181-287 (319)
222 KOG2114 Vacuolar assembly/sort 96.9 0.75 1.6E-05 51.3 26.2 31 753-784 878-908 (933)
223 KOG1258 mRNA processing protei 96.9 0.86 1.9E-05 49.2 35.6 132 336-470 44-179 (577)
224 KOG2796 Uncharacterized conser 96.9 0.43 9.2E-06 45.5 23.9 150 634-794 166-321 (366)
225 KOG1941 Acetylcholine receptor 96.9 0.025 5.4E-07 56.0 13.5 228 557-784 16-273 (518)
226 KOG0543 FKBP-type peptidyl-pro 96.9 0.011 2.4E-07 60.0 11.5 138 657-820 213-354 (397)
227 PF06239 ECSIT: Evolutionarily 96.9 0.021 4.7E-07 52.9 12.3 102 336-456 46-152 (228)
228 KOG1941 Acetylcholine receptor 96.9 0.072 1.6E-06 52.9 16.4 229 522-750 16-274 (518)
229 PF13281 DUF4071: Domain of un 96.8 0.26 5.6E-06 50.9 21.0 177 552-756 146-337 (374)
230 COG3898 Uncharacterized membra 96.7 0.79 1.7E-05 46.4 35.4 319 130-471 61-392 (531)
231 PF10300 DUF3808: Protein of u 96.7 0.065 1.4E-06 58.5 17.2 175 602-783 177-373 (468)
232 COG1729 Uncharacterized protei 96.7 0.016 3.4E-07 56.0 10.7 27 724-750 217-243 (262)
233 COG1729 Uncharacterized protei 96.7 0.02 4.3E-07 55.3 11.2 99 690-792 144-248 (262)
234 COG3118 Thioredoxin domain-con 96.7 0.26 5.6E-06 48.2 18.5 155 661-819 143-300 (304)
235 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.017 3.6E-07 60.2 11.2 65 652-716 75-141 (453)
236 KOG1585 Protein required for f 96.6 0.36 7.9E-06 45.5 18.4 204 514-744 33-249 (308)
237 COG4105 ComL DNA uptake lipopr 96.6 0.68 1.5E-05 44.6 20.9 175 589-785 41-232 (254)
238 PF10300 DUF3808: Protein of u 96.6 0.12 2.6E-06 56.5 18.0 169 566-741 176-359 (468)
239 PF13424 TPR_12: Tetratricopep 96.5 0.007 1.5E-07 47.6 6.2 29 722-750 46-74 (78)
240 PF04840 Vps16_C: Vps16, C-ter 96.5 1.2 2.6E-05 45.7 30.4 79 484-572 184-262 (319)
241 COG5107 RNA14 Pre-mRNA 3'-end 96.5 1.3 2.8E-05 45.8 36.9 136 653-793 398-536 (660)
242 PF13428 TPR_14: Tetratricopep 96.4 0.0074 1.6E-07 41.0 4.8 40 723-764 2-42 (44)
243 KOG1258 mRNA processing protei 96.4 1.9 4.1E-05 46.7 36.2 420 299-771 44-489 (577)
244 KOG2610 Uncharacterized conser 96.4 0.23 4.9E-06 49.0 16.1 160 593-755 114-280 (491)
245 PF13281 DUF4071: Domain of un 96.4 0.29 6.3E-06 50.6 17.9 186 599-786 120-334 (374)
246 KOG2280 Vacuolar assembly/sort 96.4 2.2 4.9E-05 47.2 32.6 108 654-780 686-793 (829)
247 PF13431 TPR_17: Tetratricopep 96.3 0.0035 7.7E-08 39.5 2.7 31 745-777 2-33 (34)
248 PF04184 ST7: ST7 protein; In 96.3 0.17 3.8E-06 53.0 15.9 141 629-786 180-324 (539)
249 KOG4234 TPR repeat-containing 96.3 0.088 1.9E-06 47.8 11.9 91 699-793 107-202 (271)
250 PF04184 ST7: ST7 protein; In 96.2 0.37 8.1E-06 50.6 17.8 103 657-761 264-383 (539)
251 KOG4555 TPR repeat-containing 96.2 0.06 1.3E-06 45.1 9.6 92 626-751 52-144 (175)
252 COG5107 RNA14 Pre-mRNA 3'-end 96.1 2.1 4.6E-05 44.3 37.7 137 617-757 397-535 (660)
253 PF03704 BTAD: Bacterial trans 96.1 0.34 7.3E-06 43.6 15.4 70 302-374 64-138 (146)
254 COG4785 NlpI Lipoprotein NlpI, 96.0 0.37 8.1E-06 44.5 14.4 177 596-786 79-266 (297)
255 KOG1550 Extracellular protein 96.0 3.8 8.3E-05 46.1 26.6 48 737-787 454-505 (552)
256 COG4105 ComL DNA uptake lipopr 95.9 1.7 3.7E-05 41.9 21.4 57 343-400 173-232 (254)
257 KOG1585 Protein required for f 95.8 1.7 3.7E-05 41.2 18.1 25 410-434 34-58 (308)
258 COG3118 Thioredoxin domain-con 95.7 1 2.2E-05 44.2 17.1 143 627-772 144-287 (304)
259 PF10345 Cohesin_load: Cohesin 95.6 5.6 0.00012 45.6 40.3 47 281-327 37-87 (608)
260 KOG2114 Vacuolar assembly/sort 95.5 5.6 0.00012 44.9 30.0 184 122-327 332-517 (933)
261 PF13512 TPR_18: Tetratricopep 95.5 0.39 8.4E-06 41.9 12.2 64 620-684 13-79 (142)
262 KOG2280 Vacuolar assembly/sort 95.4 5.6 0.00012 44.3 34.4 90 684-783 681-770 (829)
263 KOG1920 IkappaB kinase complex 95.4 4.9 0.00011 47.2 23.7 190 559-783 863-1052(1265)
264 COG4785 NlpI Lipoprotein NlpI, 95.1 2.8 6E-05 39.1 18.6 176 627-816 75-261 (297)
265 PF00515 TPR_1: Tetratricopept 95.1 0.043 9.3E-07 34.6 4.2 32 723-756 2-33 (34)
266 PF06552 TOM20_plant: Plant sp 95.1 0.12 2.6E-06 46.5 8.1 60 738-801 51-122 (186)
267 PF08631 SPO22: Meiosis protei 95.1 4.4 9.5E-05 41.1 25.3 102 301-407 85-192 (278)
268 PF13428 TPR_14: Tetratricopep 95.1 0.041 8.9E-07 37.3 4.2 31 654-684 3-33 (44)
269 smart00299 CLH Clathrin heavy 95.1 1.7 3.7E-05 38.6 15.9 127 126-276 9-136 (140)
270 PF04053 Coatomer_WDAD: Coatom 95.0 0.81 1.8E-05 49.3 15.9 132 231-397 296-427 (443)
271 KOG4234 TPR repeat-containing 95.0 0.22 4.8E-06 45.3 9.6 92 626-719 104-200 (271)
272 KOG4642 Chaperone-dependent E3 94.9 0.27 5.8E-06 46.2 10.1 82 699-783 22-104 (284)
273 PF07719 TPR_2: Tetratricopept 94.9 0.05 1.1E-06 34.2 4.0 32 723-756 2-33 (34)
274 PF02259 FAT: FAT domain; Int 94.9 6.1 0.00013 41.8 22.7 63 652-714 146-211 (352)
275 KOG1586 Protein required for f 94.9 3.5 7.7E-05 38.9 19.3 19 732-750 164-182 (288)
276 PF04053 Coatomer_WDAD: Coatom 94.8 0.74 1.6E-05 49.6 14.7 156 348-537 272-427 (443)
277 PF06552 TOM20_plant: Plant sp 94.7 0.18 3.9E-06 45.5 8.3 44 738-789 96-139 (186)
278 PF12921 ATP13: Mitochondrial 94.7 0.46 1E-05 41.0 10.5 49 226-274 48-97 (126)
279 PF12921 ATP13: Mitochondrial 94.6 0.67 1.5E-05 40.0 11.2 80 301-380 3-96 (126)
280 KOG4648 Uncharacterized conser 94.5 0.21 4.6E-06 49.2 8.7 93 624-719 104-197 (536)
281 smart00299 CLH Clathrin heavy 94.3 2.7 5.9E-05 37.3 15.3 124 200-348 12-136 (140)
282 PF13431 TPR_17: Tetratricopep 94.3 0.035 7.5E-07 35.0 2.0 31 711-742 3-33 (34)
283 PF13176 TPR_7: Tetratricopept 94.2 0.1 2.2E-06 33.4 4.2 26 759-784 1-26 (36)
284 COG2976 Uncharacterized protei 94.1 2.9 6.2E-05 38.5 14.3 91 693-787 95-189 (207)
285 PF09205 DUF1955: Domain of un 93.9 3.6 7.8E-05 35.0 15.6 62 727-789 91-152 (161)
286 KOG1920 IkappaB kinase complex 93.9 18 0.00038 42.9 25.7 257 439-749 788-1053(1265)
287 KOG3941 Intermediate in Toll s 93.9 0.48 1E-05 45.7 9.5 118 192-328 64-187 (406)
288 KOG1550 Extracellular protein 93.7 15 0.00032 41.5 27.5 13 738-750 525-537 (552)
289 COG1747 Uncharacterized N-term 93.6 12 0.00025 39.9 24.5 97 579-680 63-159 (711)
290 COG3629 DnrI DNA-binding trans 93.6 0.7 1.5E-05 45.7 10.6 76 722-799 153-234 (280)
291 PF13176 TPR_7: Tetratricopept 93.5 0.15 3.2E-06 32.6 4.0 27 724-750 1-27 (36)
292 KOG4648 Uncharacterized conser 93.2 0.53 1.1E-05 46.6 8.8 95 658-756 103-197 (536)
293 PF08631 SPO22: Meiosis protei 93.1 11 0.00024 38.1 27.4 100 549-651 86-191 (278)
294 COG4649 Uncharacterized protei 93.0 6.5 0.00014 35.4 14.9 124 311-435 69-195 (221)
295 PF00515 TPR_1: Tetratricopept 93.0 0.24 5.1E-06 31.1 4.4 32 758-791 2-33 (34)
296 COG2976 Uncharacterized protei 93.0 5.8 0.00013 36.5 14.4 116 635-752 70-189 (207)
297 KOG3941 Intermediate in Toll s 92.9 0.66 1.4E-05 44.7 8.9 105 335-458 65-174 (406)
298 KOG1464 COP9 signalosome, subu 92.9 9.6 0.00021 36.8 22.1 240 525-771 40-318 (440)
299 PF07719 TPR_2: Tetratricopept 92.8 0.26 5.6E-06 30.9 4.4 32 758-791 2-33 (34)
300 PF02259 FAT: FAT domain; Int 92.8 15 0.00032 38.8 24.0 168 616-789 145-341 (352)
301 PF13181 TPR_8: Tetratricopept 92.7 0.18 3.9E-06 31.6 3.5 31 724-756 3-33 (34)
302 PF10345 Cohesin_load: Cohesin 92.7 23 0.00049 40.7 45.2 193 628-821 372-606 (608)
303 PF09205 DUF1955: Domain of un 92.5 6.1 0.00013 33.7 13.3 64 302-368 88-151 (161)
304 PF09613 HrpB1_HrpK: Bacterial 92.5 2.9 6.2E-05 37.4 11.7 52 698-750 21-72 (160)
305 KOG2062 26S proteasome regulat 92.3 22 0.00048 39.8 43.9 121 661-784 510-633 (929)
306 PF13170 DUF4003: Protein of u 92.2 13 0.00028 37.8 17.7 47 248-294 80-132 (297)
307 PF10602 RPN7: 26S proteasome 92.2 2.5 5.4E-05 39.2 11.7 63 618-680 37-101 (177)
308 PF10602 RPN7: 26S proteasome 92.0 1.5 3.3E-05 40.7 10.0 62 724-785 38-101 (177)
309 PF09613 HrpB1_HrpK: Bacterial 91.9 9.1 0.0002 34.3 15.3 85 663-750 21-105 (160)
310 PF09986 DUF2225: Uncharacteri 91.7 2 4.2E-05 41.3 10.7 68 722-789 118-197 (214)
311 COG4649 Uncharacterized protei 91.5 10 0.00022 34.2 16.4 54 697-750 142-195 (221)
312 KOG2471 TPR repeat-containing 90.9 13 0.00029 39.3 16.0 143 659-803 213-380 (696)
313 COG0790 FOG: TPR repeat, SEL1 90.6 22 0.00047 36.4 24.0 48 597-647 92-143 (292)
314 COG0790 FOG: TPR repeat, SEL1 90.6 22 0.00048 36.3 24.1 181 595-788 54-268 (292)
315 TIGR02561 HrpB1_HrpK type III 90.2 12 0.00027 32.9 13.0 55 664-719 22-76 (153)
316 KOG1308 Hsp70-interacting prot 90.2 0.32 7E-06 48.4 3.9 90 700-792 127-217 (377)
317 PF13174 TPR_6: Tetratricopept 90.1 0.35 7.7E-06 29.9 2.8 24 727-750 5-28 (33)
318 COG2909 MalT ATP-dependent tra 89.9 43 0.00093 38.7 27.2 196 592-790 425-651 (894)
319 COG3629 DnrI DNA-binding trans 89.7 3.9 8.5E-05 40.6 10.9 77 584-661 155-236 (280)
320 PF04097 Nic96: Nup93/Nic96; 89.6 36 0.00079 38.9 20.3 22 767-791 515-536 (613)
321 PF08424 NRDE-2: NRDE-2, neces 89.5 29 0.00062 36.0 17.9 116 671-788 50-185 (321)
322 KOG2471 TPR repeat-containing 89.2 8.3 0.00018 40.7 13.0 42 348-389 28-69 (696)
323 PF13170 DUF4003: Protein of u 89.0 28 0.00062 35.4 20.4 127 530-658 80-223 (297)
324 COG3947 Response regulator con 89.0 25 0.00055 34.7 16.1 59 725-785 282-341 (361)
325 KOG2066 Vacuolar assembly/sort 88.7 48 0.001 37.6 31.2 105 131-242 363-467 (846)
326 PF13181 TPR_8: Tetratricopept 88.6 0.72 1.6E-05 28.8 3.5 28 758-785 2-29 (34)
327 PF08424 NRDE-2: NRDE-2, neces 88.6 20 0.00044 37.1 16.0 118 703-823 47-185 (321)
328 TIGR02561 HrpB1_HrpK type III 88.0 9.1 0.0002 33.7 10.6 50 735-786 23-73 (153)
329 KOG1586 Protein required for f 87.8 26 0.00057 33.4 20.7 16 559-574 85-100 (288)
330 PF13374 TPR_10: Tetratricopep 87.4 1.2 2.7E-05 29.3 4.3 27 724-750 4-30 (42)
331 PF07035 Mic1: Colon cancer-as 87.2 23 0.0005 32.2 15.2 31 218-248 17-47 (167)
332 COG4455 ImpE Protein of avirul 87.1 23 0.0005 33.4 13.1 121 656-787 5-135 (273)
333 KOG0276 Vesicle coat complex C 86.7 8.6 0.00019 41.7 11.6 130 550-712 617-746 (794)
334 KOG3364 Membrane protein invol 86.5 6.1 0.00013 33.9 8.5 72 684-757 29-104 (149)
335 PF13374 TPR_10: Tetratricopep 86.5 1.4 3.1E-05 29.0 4.2 28 758-785 3-30 (42)
336 PF14561 TPR_20: Tetratricopep 86.4 8.4 0.00018 30.9 9.1 77 743-821 9-88 (90)
337 PRK10941 hypothetical protein; 86.4 8.7 0.00019 38.3 11.2 61 724-786 183-244 (269)
338 PRK09687 putative lyase; Provi 86.3 40 0.00087 34.1 29.8 92 581-680 141-233 (280)
339 PRK15180 Vi polysaccharide bio 86.3 3.9 8.4E-05 42.7 8.7 125 557-684 299-423 (831)
340 COG1747 Uncharacterized N-term 85.9 54 0.0012 35.2 25.5 180 544-732 63-249 (711)
341 KOG2066 Vacuolar assembly/sort 85.4 73 0.0016 36.3 26.4 22 518-539 511-532 (846)
342 KOG2063 Vacuolar assembly/sort 85.4 85 0.0018 37.0 21.7 28 514-541 506-533 (877)
343 KOG0276 Vesicle coat complex C 85.2 13 0.00027 40.5 12.0 153 133-326 595-747 (794)
344 PF04910 Tcf25: Transcriptiona 85.1 54 0.0012 34.5 17.7 96 659-756 110-225 (360)
345 PF11207 DUF2989: Protein of u 84.5 9.3 0.0002 35.7 9.5 75 282-357 123-198 (203)
346 PF14853 Fis1_TPR_C: Fis1 C-te 84.4 4.7 0.0001 28.5 5.9 29 727-757 6-34 (53)
347 KOG0890 Protein kinase of the 84.4 1.5E+02 0.0031 38.9 39.1 152 447-606 1388-1542(2382)
348 smart00028 TPR Tetratricopepti 84.3 1.7 3.7E-05 26.0 3.6 27 724-750 3-29 (34)
349 PRK12798 chemotaxis protein; R 84.2 60 0.0013 34.2 23.1 70 721-792 256-330 (421)
350 COG4455 ImpE Protein of avirul 83.4 7.7 0.00017 36.4 8.4 75 270-345 6-80 (273)
351 KOG1464 COP9 signalosome, subu 83.4 46 0.001 32.4 18.6 155 421-575 41-219 (440)
352 PF13174 TPR_6: Tetratricopept 83.3 1.4 3E-05 27.1 2.8 29 690-718 3-31 (33)
353 PF09986 DUF2225: Uncharacteri 83.0 20 0.00044 34.4 11.7 35 722-756 165-199 (214)
354 KOG2396 HAT (Half-A-TPR) repea 82.9 73 0.0016 34.3 39.9 45 738-784 512-557 (568)
355 KOG0376 Serine-threonine phosp 82.5 2.7 5.9E-05 44.2 5.9 95 660-758 12-106 (476)
356 KOG4642 Chaperone-dependent E3 82.4 17 0.00038 34.7 10.4 84 627-713 20-104 (284)
357 KOG2396 HAT (Half-A-TPR) repea 82.3 77 0.0017 34.1 41.1 94 723-820 461-558 (568)
358 KOG4570 Uncharacterized conser 82.2 17 0.00036 36.3 10.6 49 632-680 115-163 (418)
359 PRK09687 putative lyase; Provi 82.2 60 0.0013 32.8 28.2 17 476-492 205-221 (280)
360 PF14853 Fis1_TPR_C: Fis1 C-te 82.2 5.3 0.00011 28.2 5.4 41 760-802 4-44 (53)
361 PF11207 DUF2989: Protein of u 82.1 13 0.00027 34.8 9.4 72 634-706 123-197 (203)
362 PF02284 COX5A: Cytochrome c o 82.0 23 0.0005 28.8 9.4 60 213-273 28-87 (108)
363 PF00637 Clathrin: Region in C 81.6 0.26 5.7E-06 44.1 -1.5 48 629-676 19-66 (143)
364 PRK11619 lytic murein transgly 81.6 1.1E+02 0.0023 35.3 38.9 118 594-714 253-373 (644)
365 KOG3364 Membrane protein invol 81.3 15 0.00033 31.6 8.7 72 719-793 29-105 (149)
366 PF04190 DUF410: Protein of un 80.8 55 0.0012 32.6 14.3 20 767-786 151-170 (260)
367 KOG4507 Uncharacterized conser 80.5 8 0.00017 41.7 8.4 99 665-766 620-719 (886)
368 PF04097 Nic96: Nup93/Nic96; 80.5 1.2E+02 0.0025 35.0 26.0 88 449-541 265-356 (613)
369 KOG4570 Uncharacterized conser 79.9 17 0.00037 36.2 9.8 101 296-399 60-162 (418)
370 KOG0403 Neoplastic transformat 79.9 85 0.0018 33.1 17.8 147 586-749 218-372 (645)
371 PF07035 Mic1: Colon cancer-as 79.5 50 0.0011 30.1 16.7 35 637-671 14-48 (167)
372 KOG1308 Hsp70-interacting prot 78.9 2.7 5.8E-05 42.2 4.2 88 666-755 128-215 (377)
373 PF07163 Pex26: Pex26 protein; 78.9 19 0.00042 35.3 9.7 55 696-750 92-146 (309)
374 PF07721 TPR_4: Tetratricopept 78.6 3.1 6.6E-05 24.2 2.9 20 761-780 5-24 (26)
375 PF07721 TPR_4: Tetratricopept 78.3 3.2 6.9E-05 24.1 2.9 22 725-746 4-25 (26)
376 PF00637 Clathrin: Region in C 77.9 1.8 3.8E-05 38.7 2.6 83 658-747 13-95 (143)
377 PF14561 TPR_20: Tetratricopep 76.6 24 0.00051 28.4 8.4 58 712-772 13-73 (90)
378 KOG0551 Hsp90 co-chaperone CNS 76.6 41 0.00088 34.0 11.4 93 689-783 83-179 (390)
379 PF13929 mRNA_stabil: mRNA sta 75.9 79 0.0017 31.6 13.2 135 175-309 143-287 (292)
380 TIGR03504 FimV_Cterm FimV C-te 75.6 6.6 0.00014 26.4 4.1 24 762-785 4-27 (44)
381 KOG4507 Uncharacterized conser 74.9 11 0.00025 40.6 7.7 105 691-798 611-716 (886)
382 KOG0376 Serine-threonine phosp 74.9 5.2 0.00011 42.2 5.3 93 624-719 11-104 (476)
383 COG3947 Response regulator con 73.0 1E+02 0.0023 30.7 16.9 58 551-609 283-340 (361)
384 smart00028 TPR Tetratricopepti 72.7 6.9 0.00015 23.1 3.8 27 759-785 3-29 (34)
385 KOG2300 Uncharacterized conser 71.0 1.6E+02 0.0034 31.8 43.4 124 307-430 14-150 (629)
386 cd00923 Cyt_c_Oxidase_Va Cytoc 70.8 33 0.00072 27.7 7.5 44 566-609 26-69 (103)
387 KOG2063 Vacuolar assembly/sort 69.9 2.4E+02 0.0052 33.5 21.7 27 550-576 507-533 (877)
388 PF10579 Rapsyn_N: Rapsyn N-te 69.9 13 0.00028 28.6 5.0 46 734-779 18-65 (80)
389 PRK11619 lytic murein transgly 69.0 2.2E+02 0.0049 32.8 41.7 138 132-281 41-179 (644)
390 cd00923 Cyt_c_Oxidase_Va Cytoc 68.9 61 0.0013 26.2 9.6 63 210-273 22-84 (103)
391 PF02284 COX5A: Cytochrome c o 68.5 64 0.0014 26.4 8.8 34 611-644 39-72 (108)
392 KOG0545 Aryl-hydrocarbon recep 68.0 1.2E+02 0.0026 29.4 12.8 60 724-785 232-292 (329)
393 COG4976 Predicted methyltransf 66.9 14 0.00031 35.0 5.6 56 697-755 5-60 (287)
394 TIGR02508 type_III_yscG type I 66.7 69 0.0015 26.1 8.5 50 310-367 49-98 (115)
395 COG4259 Uncharacterized protei 66.6 31 0.00067 27.8 6.5 54 708-763 58-111 (121)
396 TIGR03504 FimV_Cterm FimV C-te 66.2 13 0.00028 25.1 3.9 23 201-223 5-27 (44)
397 KOG0292 Vesicle coat complex C 64.3 2.9E+02 0.0062 32.3 23.9 131 169-329 652-782 (1202)
398 TIGR02508 type_III_yscG type I 62.9 83 0.0018 25.6 8.4 79 139-225 20-98 (115)
399 PRK15180 Vi polysaccharide bio 62.0 2.3E+02 0.0049 30.4 31.4 122 311-437 300-421 (831)
400 KOG4279 Serine/threonine prote 62.0 1.9E+02 0.0042 32.9 13.6 16 770-785 379-394 (1226)
401 COG4715 Uncharacterized conser 61.5 2.6E+02 0.0056 30.9 22.6 106 514-626 305-412 (587)
402 cd02682 MIT_AAA_Arch MIT: doma 61.4 65 0.0014 24.7 7.3 50 767-825 16-70 (75)
403 PF07575 Nucleopor_Nup85: Nup8 60.6 3E+02 0.0065 31.3 19.3 27 160-187 149-175 (566)
404 PRK10941 hypothetical protein; 60.3 53 0.0011 32.8 8.8 60 694-756 188-247 (269)
405 COG2909 MalT ATP-dependent tra 60.2 3.4E+02 0.0074 31.9 33.2 228 523-750 469-725 (894)
406 cd02681 MIT_calpain7_1 MIT: do 60.2 51 0.0011 25.4 6.7 18 810-827 56-73 (76)
407 PRK12798 chemotaxis protein; R 59.7 2.4E+02 0.0052 30.0 20.9 156 630-787 125-287 (421)
408 PF12862 Apc5: Anaphase-promot 59.7 36 0.00078 27.6 6.4 69 733-801 9-86 (94)
409 KOG4521 Nuclear pore complex, 59.3 2.1E+02 0.0045 34.6 13.9 128 655-786 986-1132(1480)
410 PF10579 Rapsyn_N: Rapsyn N-te 59.2 19 0.0004 27.8 4.1 18 312-329 18-35 (80)
411 PF04910 Tcf25: Transcriptiona 59.0 2.4E+02 0.0053 29.8 20.1 96 624-719 110-225 (360)
412 PF02184 HAT: HAT (Half-A-TPR) 58.6 21 0.00045 22.0 3.4 27 737-765 2-28 (32)
413 PF07163 Pex26: Pex26 protein; 58.3 90 0.002 30.9 9.5 85 624-710 90-181 (309)
414 PF15297 CKAP2_C: Cytoskeleton 58.2 62 0.0013 33.2 8.7 65 737-803 118-186 (353)
415 PF14689 SPOB_a: Sensor_kinase 57.8 30 0.00065 25.4 5.0 46 738-785 6-51 (62)
416 PF09670 Cas_Cas02710: CRISPR- 57.2 1.4E+02 0.003 31.8 11.9 53 592-645 141-197 (379)
417 PF09670 Cas_Cas02710: CRISPR- 57.2 1.3E+02 0.0027 32.1 11.6 55 626-681 140-198 (379)
418 KOG0530 Protein farnesyltransf 56.8 2.1E+02 0.0045 28.3 19.9 201 596-802 57-269 (318)
419 PF04190 DUF410: Protein of un 56.8 2.2E+02 0.0047 28.5 18.9 27 580-606 88-114 (260)
420 KOG3807 Predicted membrane pro 55.6 2.4E+02 0.0052 28.6 13.5 55 621-677 279-336 (556)
421 KOG0403 Neoplastic transformat 55.1 2.9E+02 0.0063 29.5 25.7 75 585-664 512-586 (645)
422 COG4941 Predicted RNA polymera 54.9 2.3E+02 0.005 29.0 11.7 120 633-757 272-398 (415)
423 PF07720 TPR_3: Tetratricopept 54.4 32 0.00069 22.0 4.0 20 725-744 4-23 (36)
424 PHA02875 ankyrin repeat protei 54.2 3E+02 0.0065 29.7 14.5 16 308-323 73-88 (413)
425 KOG4279 Serine/threonine prote 54.1 3.9E+02 0.0084 30.6 17.0 194 532-756 183-398 (1226)
426 PF11846 DUF3366: Domain of un 53.7 41 0.00088 31.8 6.7 50 737-790 126-175 (193)
427 PF14689 SPOB_a: Sensor_kinase 53.5 28 0.00061 25.5 4.2 46 176-223 6-51 (62)
428 COG5187 RPN7 26S proteasome re 53.1 2.5E+02 0.0053 28.1 13.9 68 337-404 115-187 (412)
429 PF10255 Paf67: RNA polymerase 51.9 82 0.0018 33.5 8.9 94 621-714 79-191 (404)
430 PF07575 Nucleopor_Nup85: Nup8 51.7 4.1E+02 0.0089 30.2 16.8 23 230-253 149-171 (566)
431 KOG0551 Hsp90 co-chaperone CNS 51.3 1.4E+02 0.003 30.4 9.7 86 626-712 90-178 (390)
432 cd02680 MIT_calpain7_2 MIT: do 50.7 42 0.0009 25.8 4.8 33 738-786 3-35 (75)
433 COG2912 Uncharacterized conser 50.7 1.1E+02 0.0025 30.2 9.0 64 725-792 184-248 (269)
434 PF12862 Apc5: Anaphase-promot 50.1 86 0.0019 25.3 7.1 52 629-680 10-69 (94)
435 KOG2062 26S proteasome regulat 49.6 4.6E+02 0.0099 30.2 42.1 26 268-293 213-238 (929)
436 KOG2581 26S proteasome regulat 49.1 3.5E+02 0.0075 28.6 13.1 140 580-719 122-279 (493)
437 PF10255 Paf67: RNA polymerase 48.9 1.4E+02 0.003 31.8 10.0 97 654-750 77-192 (404)
438 PF09477 Type_III_YscG: Bacter 48.2 1.2E+02 0.0026 25.1 7.2 79 139-225 21-99 (116)
439 KOG0545 Aryl-hydrocarbon recep 48.1 2.7E+02 0.0059 27.1 14.4 60 658-718 236-295 (329)
440 KOG2659 LisH motif-containing 47.9 2.4E+02 0.0051 27.2 10.3 22 201-222 70-91 (228)
441 KOG4521 Nuclear pore complex, 47.8 3.6E+02 0.0078 32.7 13.5 20 521-540 929-948 (1480)
442 KOG0890 Protein kinase of the 47.1 8.5E+02 0.018 32.5 45.7 323 305-646 1388-1731(2382)
443 smart00777 Mad3_BUB1_I Mad3/BU 46.6 1.1E+02 0.0024 26.4 7.3 41 741-781 82-123 (125)
444 PF04781 DUF627: Protein of un 46.1 1.8E+02 0.0039 24.4 8.4 23 659-681 3-25 (111)
445 KOG0687 26S proteasome regulat 46.0 3.5E+02 0.0075 27.7 14.7 24 689-712 106-129 (393)
446 COG4976 Predicted methyltransf 45.8 39 0.00085 32.2 4.8 60 661-721 4-63 (287)
447 KOG2422 Uncharacterized conser 44.4 4.9E+02 0.011 29.0 16.5 156 627-785 248-447 (665)
448 smart00386 HAT HAT (Half-A-TPR 43.9 47 0.001 19.7 3.7 27 736-764 1-28 (33)
449 COG4259 Uncharacterized protei 43.9 1.3E+02 0.0027 24.5 6.5 48 672-719 57-104 (121)
450 KOG0530 Protein farnesyltransf 43.9 3.3E+02 0.0072 26.9 13.8 170 627-804 53-233 (318)
451 KOG2908 26S proteasome regulat 43.3 2.6E+02 0.0057 28.7 10.2 55 659-713 82-141 (380)
452 PHA02537 M terminase endonucle 43.3 82 0.0018 30.5 6.7 23 662-684 93-115 (230)
453 PF13929 mRNA_stabil: mRNA sta 43.3 3.6E+02 0.0078 27.1 18.0 115 457-571 143-262 (292)
454 PF11846 DUF3366: Domain of un 43.2 53 0.0012 31.0 5.7 33 192-224 141-173 (193)
455 PF10366 Vps39_1: Vacuolar sor 43.1 1E+02 0.0022 25.8 6.6 27 444-470 41-67 (108)
456 cd02683 MIT_1 MIT: domain cont 42.8 1.6E+02 0.0034 22.8 7.5 19 767-785 16-34 (77)
457 PHA02537 M terminase endonucle 42.0 2.8E+02 0.006 27.0 10.1 108 627-758 93-212 (230)
458 KOG4814 Uncharacterized conser 42.0 1.9E+02 0.0041 32.3 9.7 55 727-783 399-454 (872)
459 KOG3824 Huntingtin interacting 41.8 1.2E+02 0.0025 30.4 7.5 48 734-783 128-176 (472)
460 PF14669 Asp_Glu_race_2: Putat 41.7 3E+02 0.0065 25.7 14.8 24 377-400 137-160 (233)
461 KOG2659 LisH motif-containing 41.7 3.3E+02 0.0072 26.3 11.3 98 614-713 23-129 (228)
462 PF11848 DUF3368: Domain of un 41.6 98 0.0021 21.3 5.2 26 209-234 16-41 (48)
463 PF11838 ERAP1_C: ERAP1-like C 41.5 4E+02 0.0087 27.4 12.6 113 140-255 146-262 (324)
464 cd02684 MIT_2 MIT: domain cont 41.4 1.6E+02 0.0035 22.6 7.7 18 768-785 17-34 (75)
465 PF12968 DUF3856: Domain of Un 41.0 2.3E+02 0.0049 24.2 13.4 65 721-785 54-128 (144)
466 cd00280 TRFH Telomeric Repeat 40.6 3E+02 0.0066 25.5 11.3 129 108-245 1-158 (200)
467 KOG3824 Huntingtin interacting 40.5 74 0.0016 31.7 6.0 57 662-719 126-182 (472)
468 TIGR02710 CRISPR-associated pr 40.2 4.8E+02 0.01 27.7 12.2 53 625-677 138-196 (380)
469 COG5159 RPN6 26S proteasome re 39.7 4E+02 0.0087 26.6 22.0 95 376-470 129-234 (421)
470 PF11848 DUF3368: Domain of un 39.2 1.1E+02 0.0024 21.0 5.2 33 171-203 13-45 (48)
471 KOG0292 Vesicle coat complex C 38.7 2.8E+02 0.006 32.5 10.6 157 517-715 625-781 (1202)
472 COG0735 Fur Fe2+/Zn2+ uptake r 38.6 1.9E+02 0.0042 25.7 8.0 61 640-701 9-69 (145)
473 KOG0686 COP9 signalosome, subu 38.3 5.1E+02 0.011 27.5 14.8 16 455-470 317-332 (466)
474 KOG1839 Uncharacterized protei 38.2 2.8E+02 0.0061 34.0 11.2 100 686-785 972-1085(1236)
475 PHA02875 ankyrin repeat protei 38.0 5.4E+02 0.012 27.7 14.7 53 382-442 175-230 (413)
476 PF10516 SHNi-TPR: SHNi-TPR; 37.7 70 0.0015 20.7 3.7 27 724-750 3-29 (38)
477 PF04212 MIT: MIT (microtubule 37.5 1.7E+02 0.0038 21.8 7.8 19 767-785 15-33 (69)
478 PF14669 Asp_Glu_race_2: Putat 36.9 3.6E+02 0.0078 25.2 15.2 56 411-466 136-205 (233)
479 PF09868 DUF2095: Uncharacteri 36.8 98 0.0021 25.7 5.1 28 127-154 64-91 (128)
480 PF04762 IKI3: IKI3 family; I 36.7 4.1E+02 0.009 32.3 12.7 28 654-681 814-843 (928)
481 KOG3807 Predicted membrane pro 36.6 4.8E+02 0.01 26.6 13.8 60 691-750 279-339 (556)
482 KOG4077 Cytochrome c oxidase, 35.9 2.3E+02 0.0049 24.4 7.2 46 213-258 67-112 (149)
483 cd08819 CARD_MDA5_2 Caspase ac 35.7 2.3E+02 0.0049 22.6 7.6 64 672-741 22-85 (88)
484 PF07149 Pes-10: Pes-10; Inte 35.6 5.3E+02 0.012 26.9 23.0 61 268-328 212-273 (370)
485 PF11663 Toxin_YhaV: Toxin wit 35.4 40 0.00086 29.1 2.9 31 349-381 107-137 (140)
486 PF00244 14-3-3: 14-3-3 protei 35.3 4.4E+02 0.0096 25.8 11.4 18 593-610 180-197 (236)
487 COG5159 RPN6 26S proteasome re 34.4 4.9E+02 0.011 26.1 23.1 50 448-497 9-65 (421)
488 KOG1310 WD40 repeat protein [G 34.4 3.6E+02 0.0077 29.6 10.1 26 759-784 447-472 (758)
489 PF15297 CKAP2_C: Cytoskeleton 34.3 2.7E+02 0.0059 28.8 9.0 67 317-383 120-186 (353)
490 PF05053 Menin: Menin; InterP 34.3 4.7E+02 0.01 29.1 11.1 25 759-783 320-344 (618)
491 PRK10564 maltose regulon perip 34.2 77 0.0017 31.9 5.1 30 410-439 260-289 (303)
492 PF00244 14-3-3: 14-3-3 protei 33.8 4.7E+02 0.01 25.7 15.6 57 553-609 7-64 (236)
493 COG3526 Uncharacterized protei 33.6 54 0.0012 25.1 3.0 37 802-838 62-98 (99)
494 KOG0686 COP9 signalosome, subu 33.5 6.1E+02 0.013 26.9 15.0 63 196-258 151-215 (466)
495 KOG0991 Replication factor C, 33.5 4.6E+02 0.0099 25.5 13.3 77 573-652 185-273 (333)
496 KOG4077 Cytochrome c oxidase, 33.0 2.8E+02 0.006 23.9 7.3 30 614-643 81-110 (149)
497 KOG0687 26S proteasome regulat 32.4 5.7E+02 0.012 26.2 15.3 96 583-680 105-209 (393)
498 PF08311 Mad3_BUB1_I: Mad3/BUB 32.3 3.3E+02 0.0072 23.5 9.2 42 600-641 81-123 (126)
499 PRK15490 Vi polysaccharide bio 32.2 4.9E+02 0.011 29.4 11.3 139 697-842 18-165 (578)
500 cd00280 TRFH Telomeric Repeat 31.7 2.9E+02 0.0063 25.6 7.8 67 211-280 85-158 (200)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-86 Score=784.53 Aligned_cols=709 Identities=19% Similarity=0.273 Sum_probs=664.1
Q ss_pred HHHHHHHccCCcccHHHHHHHHhcc---cCCCCHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHc
Q 003122 97 EVVERVLELKHYEDVEGVLNRWVGR---FARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARH 173 (846)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~ 173 (846)
.++..+...+...++..+++.+... .+...+..+++.+...+.++.|.+++..+.+.. ..++..++|+++..|++.
T Consensus 56 ~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~~ 134 (857)
T PLN03077 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVRF 134 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhC
Confidence 4455555555666666777766542 344457788999999999999999999998654 467888999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 174 NQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVC 253 (846)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 253 (846)
|+++.|.++|++|.+ ||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..++++.+.+++
T Consensus 135 g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 135 GELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred CChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 999999999999985 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003122 254 KKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSEC 333 (846)
Q Consensus 254 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 333 (846)
..|.+.|+.||..+||.|+.+|++.|++++|.++|++|. .||.++||.+|.+|++.|++++|+++|++|...+.
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~-- 284 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSV-- 284 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 999999999999999999999999999999999999997 47899999999999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 003122 334 LPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSL 413 (846)
Q Consensus 334 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 413 (846)
.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|+.+
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~l 360 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAM 360 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999999999964 799999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 414 LNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRK 493 (846)
Q Consensus 414 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 493 (846)
+.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+++.|+.+|+++|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 003122 494 VNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEM 573 (846)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 573 (846)
++|.++|+.|.. +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|..+.+.+++..+
T Consensus 441 ~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 441 DKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred HHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 999999999874 4888999999999999999999999999986 58999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 574 MDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI 653 (846)
Q Consensus 574 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 653 (846)
.+.|+.++..++++|+++|+++|++++|.++|+.+ .||..+||.|+.+|++.|+.++|+++|++|.+.|+.||..
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999987 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMR-EQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|.++++++++.|++++|.+++++|. ..++..+|++|+.+|
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac 667 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNAC 667 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Confidence 99999999999999999999999999 68999999999999999999999999999999995 234678999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH-----HHHHHHHHhcC
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMF-----RDIVSFAQTRG 806 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-----~~l~~~~~~~~ 806 (846)
..+|+.+.|+...+++++ ++|+ ...|..|++.|...|+|++|.++++.|.+.|+++++++. ..+..|..++.
T Consensus 668 ~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~ 745 (857)
T PLN03077 668 RIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDE 745 (857)
T ss_pred HHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCC
Confidence 999999999999999999 9995 557888889999999999999999999999999998743 23457788899
Q ss_pred CcchHHHHHHHHHHHhhccCCCCCCCCcc
Q 003122 807 GAEYAAIIQERIESLRMKSGDPSFDQQST 835 (846)
Q Consensus 807 ~~~~a~~~~~~l~~l~~~~~~~~~~~~~~ 835 (846)
.|++..+||+.+++|..++++.||.|++.
T Consensus 746 ~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 746 SHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 99999999999999999999999998764
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.7e-78 Score=710.87 Aligned_cols=667 Identities=19% Similarity=0.263 Sum_probs=635.4
Q ss_pred CCCHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003122 124 RKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALIS 203 (846)
Q Consensus 124 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 203 (846)
...++.++..+++.|.+++|+.+|+.|... +.+++..+|..++..|.+.+.++.|..++..+.+.+..++...+|+|+.
T Consensus 51 ~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~ 129 (857)
T PLN03077 51 THDSNSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLS 129 (857)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH
Confidence 345778899999999999999999999864 5688999999999999999999999999999999998999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHH
Q 003122 204 AHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSK 283 (846)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 283 (846)
+|++.|+++.|.++|++|. .||..+||+++.+|++.|++++|+++|++|...|+.||..||+.++.+|+..+++..
T Consensus 130 ~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 130 MFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 9999999999999999996 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 284 ALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTM 363 (846)
Q Consensus 284 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 363 (846)
+.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.. ||.++||++|.+|++.|++++|.++|++|
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999964 68999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH
Q 003122 364 LAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV 443 (846)
Q Consensus 364 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 443 (846)
...|+.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 57899
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003122 444 SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYM 523 (846)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 523 (846)
+|+.+|.+|++.|++++|+++|++|.+.|+.||..|++.++.+|++.|+.+.|.+++..+.+.|+.++..+||.||++|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 524 NVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAES 603 (846)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 603 (846)
+.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. +++||..+|+.++.+|++.|+++.+.+
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 99999999999999974 5888999999999999999999999999986 589999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003122 604 MFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDI 683 (846)
Q Consensus 604 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (846)
++..+.+.|+.+|..+++.|+++|++.|++++|.++|+++ .||..+|+.++.+|++.|+.++|+++|++|.+.|+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc-cCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHH
Q 003122 684 TFSDSIFFEMVLACSLLRDWKTTIDLIKQME-PSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSI 762 (846)
Q Consensus 684 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 762 (846)
.||..+|..++.+|.+.|++++|.++++.|. ..+..++...|+.++.+|++.|++++|.+++++|- ..||..+|..
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~a 662 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGA 662 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHH
Confidence 9999999999999999999999999999998 45556678899999999999999999999999983 7899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003122 763 LLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFAQTRGGAEYAAIIQERIES 820 (846)
Q Consensus 763 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~l~~ 820 (846)
|+.+|...|+.+.+....+++.+ +.|+ ...|..+...|...|+.+++..+.+.+++
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999999999999999887 5665 45677778889999999888888877766
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-68 Score=613.19 Aligned_cols=545 Identities=18% Similarity=0.266 Sum_probs=429.2
Q ss_pred CHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003122 126 NFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAH 205 (846)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 205 (846)
.+..++..+++.|++++|+++|++|.+.+..+++..+++.++..|.+.|.+++|..+|..|.. ||..+|+.++.+|
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 355666777777888888888888877655556666777777888888888888888877764 7788888888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHH
Q 003122 206 GRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKAL 285 (846)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 285 (846)
++.|++++|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 286 SYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLA 365 (846)
Q Consensus 286 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (846)
++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+.++.||..+|++++.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888764445557888888888888888888888888888888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHH
Q 003122 366 EGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSY 445 (846)
Q Consensus 366 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 445 (846)
.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 003122 446 SALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNV 525 (846)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 525 (846)
+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|...|+.||..+|+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 88888888888888888888888777778888888888888888888888888888888778888888888888888888
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 526 GEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMF 605 (846)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 605 (846)
|++++|.++|.+|.+.|+.||..+|+.++..|. +++++|..+.+.+...+. +......+..++|..+|
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKWTSWALMVY 835 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccccccchHHHHHHHH
Confidence 888888888888888888888888887775543 245555555444432110 01111223456799999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003122 606 NMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITF 685 (846)
Q Consensus 606 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 685 (846)
++|.+.|+.||..||+.++.+++..+..+.+..+++.|...+..|+..+|+.|++++.+. .++|..++++|...|+.|
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCC
Confidence 999999999999999999988888899999999999988888888999999999988432 468999999999999887
Q ss_pred CHH
Q 003122 686 SDS 688 (846)
Q Consensus 686 ~~~ 688 (846)
+..
T Consensus 914 ~~~ 916 (1060)
T PLN03218 914 SVS 916 (1060)
T ss_pred Ccc
Confidence 764
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-66 Score=599.28 Aligned_cols=548 Identities=22% Similarity=0.332 Sum_probs=486.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 003122 191 CKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAV-APSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHN 269 (846)
Q Consensus 191 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 269 (846)
..++...|..++..|++.|++++|+++|+.|.+.|+ .++..+++.++..|++.|.+++|+.+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 356788889999999999999999999999999886 46777888899999999999999999988864 8999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 003122 270 IVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSV 349 (846)
Q Consensus 270 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 349 (846)
.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+.. ||..+|+.||.+|++
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~--PdvvTynaLI~gy~k 519 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE--ANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876544 899999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHhcCChHHHH
Q 003122 350 NGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKK--NGLCPDIVSYTSLLNAYGRSQQPVKAR 427 (846)
Q Consensus 350 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~A~ 427 (846)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++|+.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999976 678899999999999999999999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003122 428 EVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRD 507 (846)
Q Consensus 428 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 507 (846)
++|+.|.+.|+.|+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.++|.+++..|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 508 IKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSS 587 (846)
Q Consensus 508 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 587 (846)
+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 588 VISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQ 667 (846)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 667 (846)
++.+|++.|++++|.++|++|.+.|+.||..+|+.|+..|. +++++|..+.+.+.... + .......+.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w 827 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKW 827 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccch
Confidence 99999999999999999999999999999999999986654 35677776665554311 0 111112233
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFK 747 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 747 (846)
.++|+.+|++|++.|+.|+..+|..++.+++..+..+.+..+++.+......++..+|+.|++++.+. .++|..++++
T Consensus 828 ~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 828 TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 46799999999999999999999999988888888999999998887666666788899999988432 4689999999
Q ss_pred HHhcCCCcCHH
Q 003122 748 IVSSGAEANFN 758 (846)
Q Consensus 748 ~~~~g~~p~~~ 758 (846)
|.+.|+.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 99999999764
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7e-64 Score=576.25 Aligned_cols=521 Identities=18% Similarity=0.244 Sum_probs=435.1
Q ss_pred CCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHH
Q 003122 262 GPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTN-IRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTF 340 (846)
Q Consensus 262 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 340 (846)
..+..+|+.+|.++.+.|++++|+++|+.|...+ +.||..+|+.++.++++.++++.|.+++..|...+.. ||..+|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~--~~~~~~ 161 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE--PDQYMM 161 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--cchHHH
Confidence 3466677777777777777777777777777543 5667777777777777777777777777777665433 666777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 003122 341 TSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRS 420 (846)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 420 (846)
+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 777777777777777777776664 3566666666666666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 421 QQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVL 500 (846)
Q Consensus 421 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 500 (846)
|..+.+.+++..+.+.|+.+|..+|+.||++|++.|++++|.++|++|.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------------------------------- 286 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------------------------------- 286 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-------------------------------
Confidence 6666666666666666666666666666666666666666666666553
Q ss_pred HHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 003122 501 LAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPL 580 (846)
Q Consensus 501 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 580 (846)
.+|.++||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+++
T Consensus 287 --------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 287 --------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred --------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC
Confidence 237788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 581 TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMR 660 (846)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 660 (846)
|..+|++|+++|+++|++++|.++|++|.+ ||..+||.|+.+|++.|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 999999999999999999999999999974 7999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 003122 661 AFNKGGQPSKVLLVAEFMRE-QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIE 739 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 739 (846)
+|++.|+.++|.++|+.|.+ .|+.|+..+|.+++++|++.|++++|.++++++.. .++..+|+.|+.+|..+|+++
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~---~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF---KPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999986 69999999999999999999999999999998752 336678999999999999999
Q ss_pred HHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh-----HHHHHHHHHhcCCcchHHH
Q 003122 740 SMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGM-----FRDIVSFAQTRGGAEYAAI 813 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-----~~~l~~~~~~~~~~~~a~~ 813 (846)
.|..+++++++ +.|+ ..+|..|+++|.+.|+|++|.++++.|.+.|+++.++. -..+..|..++..|++..+
T Consensus 512 ~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~ 589 (697)
T PLN03081 512 LGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589 (697)
T ss_pred HHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHH
Confidence 99999999998 8895 56999999999999999999999999999999877663 1233567788889999999
Q ss_pred HHHHHHHHhhccCCCCCCCCccC
Q 003122 814 IQERIESLRMKSGDPSFDQQSTS 836 (846)
Q Consensus 814 ~~~~l~~l~~~~~~~~~~~~~~~ 836 (846)
||+++.+|..++++.||.|++..
T Consensus 590 i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 590 IYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHHHHHHHHHcCCCCCcch
Confidence 99999999999999999998653
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-62 Score=564.82 Aligned_cols=511 Identities=20% Similarity=0.317 Sum_probs=464.5
Q ss_pred CCCHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003122 124 RKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALIS 203 (846)
Q Consensus 124 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 203 (846)
...++.++..+.+.|++++|+++|+||....++.++..+|+.++.+|++.++++.|..++..|.+.|+.||..+|+.|+.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 33577888999999999999999999998777789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHH
Q 003122 204 AHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSK 283 (846)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 283 (846)
+|++.|+++.|.++|++|. .||..+||+++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999996 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 284 ALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTM 363 (846)
Q Consensus 284 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 363 (846)
+.+++..+.+.|+.||..+++.|+++|++.|++++|.++|++|.. +|+++|+.|+.+|++.|++++|.++|++|
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999964 58999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHH
Q 003122 364 LAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLV 443 (846)
Q Consensus 364 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 443 (846)
.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|++|+++|++.|++++|.++|++|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 47999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCccCHHHHHHHHHHH
Q 003122 444 SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEM-RDIKLNTVAYNSAIGSY 522 (846)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~ 522 (846)
+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .++.|+..+|+.++++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 58899999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 523 MNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAE 602 (846)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 602 (846)
++.|++++|.+++++| +..|+..+|+.|+.+|...|+.+.|..+++++.+.+ +.+..+|..|+++|++.|++++|.
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHH
Confidence 9999999999998876 457899999999999999999999999999987654 445678999999999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHH---HHHH----h----cCCHHHHHHHHHHHHHCCCCCCH
Q 003122 603 SMFNMMKMSGCSPD-VITYTAML---HAYN----T----AEDWEKACALFLEMETNNIEPDS 652 (846)
Q Consensus 603 ~~~~~~~~~~~~p~-~~~~~~l~---~~~~----~----~g~~~~A~~~~~~~~~~g~~p~~ 652 (846)
++++.|.+.|+... ..+|..+. +.+. . ..-++...++..+|.+.|..||.
T Consensus 549 ~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 549 KVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999887533 23332111 0000 0 01134455667777777777774
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-41 Score=411.80 Aligned_cols=666 Identities=13% Similarity=0.085 Sum_probs=397.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 003122 129 FLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRA 208 (846)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 208 (846)
.+...+...|++++|...|+.+.... +.++.++..++.++...|++++|...++.+.+.. +.+...+......+...
T Consensus 198 ~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 274 (899)
T TIGR02917 198 LKGDLLLSLGNIELALAAYRKAIALR--PNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQK 274 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHh
Confidence 34445555666666666666665543 4455566666666666666666666666665532 12222222333334444
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHH
Q 003122 209 GQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYF 288 (846)
Q Consensus 209 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 288 (846)
|++++|+..|+.+.+.+.. +...+..+...+...|++++|...++++.+... .+...+..+...+.+.|++++|...+
T Consensus 275 ~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (899)
T TIGR02917 275 KNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATL 352 (899)
T ss_pred cCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5555555555554443311 122222333344444555555555554444321 13333444444445555555555555
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHH------------------------
Q 003122 289 ELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSII------------------------ 344 (846)
Q Consensus 289 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li------------------------ 344 (846)
+.+.... +.+...+..+...+.+.|++++|.++|+++.+..+. +...+..+.
T Consensus 353 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 353 SPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE---NAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 5544432 223444444555555555555555555554443322 333344444
Q ss_pred ----------HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 003122 345 ----------HLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLL 414 (846)
Q Consensus 345 ----------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 414 (846)
..+.+.|++++|..+++.+... .+.+..++..+...+...|++++|...|+++.+.. +.+...+..++
T Consensus 429 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 506 (899)
T TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLA 506 (899)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHH
Confidence 4444455555555555554443 12344455556666666666666666666655432 22344455556
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 415 NAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKV 494 (846)
Q Consensus 415 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 494 (846)
..+...|++++|.+.++++.... +.+..++..+...+...|+.++|..+++++.+.+ +.+...+..++..+...|+.+
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH
Confidence 66666666666666666665543 3345556666666666666666666666665543 334455556666666667777
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003122 495 NIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMM 574 (846)
Q Consensus 495 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 574 (846)
+|..++..+.... +.+...|..++..+...|++++|+..|+.+.+.. +.+...+..++..+...|++++|...++++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7766666665542 3455666777777777777777777777766543 3345556666666777777777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003122 575 DLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIA 654 (846)
Q Consensus 575 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 654 (846)
+.. +.+..++..++..+...|++++|..+++.+...+ +.+...+..++..+...|++++|.+.|+++... .|+..+
T Consensus 663 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 738 (899)
T TIGR02917 663 ELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQN 738 (899)
T ss_pred hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchH
Confidence 643 4456666777777777777777777777776653 345666667777777777777777777777763 455556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK 734 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 734 (846)
+..++.++.+.|++++|.+.++++++..+. +...+..++.+|...|++++|+..++++....|. ++.+++.++.++..
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 666777777777777777777777766544 5666777777777777777777777777766665 56677777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHH
Q 003122 735 SGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAI 813 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 813 (846)
.|+ ++|+.+++++++ ..|+ ...+..++.+|...|++++|.++++++++.+.. ++.++..++..+...|+.++|.+
T Consensus 817 ~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 817 LKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred cCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 777 677777777777 6663 446667777777777777787777777775432 56677777777777777777777
Q ss_pred HHHHHH
Q 003122 814 IQERIE 819 (846)
Q Consensus 814 ~~~~l~ 819 (846)
+++++.
T Consensus 893 ~~~~~~ 898 (899)
T TIGR02917 893 ELDKLL 898 (899)
T ss_pred HHHHHh
Confidence 776653
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.1e-40 Score=398.73 Aligned_cols=673 Identities=13% Similarity=0.056 Sum_probs=435.6
Q ss_pred CHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003122 126 NFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAH 205 (846)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 205 (846)
.+..+...+...|++++|..+++.+.... +.+...+..+..++...|++++|...|+.+.+.. +.+..++..++..+
T Consensus 161 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~ 237 (899)
T TIGR02917 161 AKLGLAQLALAENRFDEARALIDEVLTAD--PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATIL 237 (899)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 35556677778888888888888887654 5667788888888888888888888888887643 45677788888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHH
Q 003122 206 GRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKAL 285 (846)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 285 (846)
...|++++|...++.+.+.... +...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|.
T Consensus 238 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~ 315 (899)
T TIGR02917 238 IEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAY 315 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888876433 3344444555666788888888888888876432 2334445566778889999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 286 SYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLA 365 (846)
Q Consensus 286 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (846)
..|+.+.+.. +.+...+..+...+.+.|++++|...++.+....+. +...+..+...+.+.|++++|..+|+++.+
T Consensus 316 ~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 391 (899)
T TIGR02917 316 QYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD---DPAALSLLGEAYLALGDFEKAAEYLAKATE 391 (899)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9999988764 345677888889999999999999999999876554 778889999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHH
Q 003122 366 EGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSY 445 (846)
Q Consensus 366 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 445 (846)
.. +.+...+..+...+...|++++|...++++.+.... .......++..|.+.|++++|..+++.+.... +.+..+|
T Consensus 392 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 468 (899)
T TIGR02917 392 LD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLH 468 (899)
T ss_pred cC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHH
Confidence 63 234556777777777788888887777777654321 22233344455555555555555555554432 3344455
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---------------------------------CCCCHHHHHHHHHHHHhcCC
Q 003122 446 SALIDAYGSNGLLAEAVEVFREMEQDG---------------------------------IEPNIVSICTLLAACGRCGR 492 (846)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~~~~~g---------------------------------~~~~~~~~~~ll~~~~~~g~ 492 (846)
..++..+...|++++|.+.|+++.+.. .+.+..++..+...+.+.|+
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 548 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGN 548 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCC
Confidence 555555555555555555555554432 12233344444444444444
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003122 493 KVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDE 572 (846)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 572 (846)
.++|...+..+...+ +.+...+..++..|...|++++|..+++.+.+.. +.+...|..++.++...|++++|...+++
T Consensus 549 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 549 EEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444444332 2233444455555555555555555555555432 33445555555556666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 573 MMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS 652 (846)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 652 (846)
+.+.. +.+...+..++.++...|++++|...|+++.... +.+..++..++..+...|++++|.++++.+.+.+ +.+.
T Consensus 627 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 703 (899)
T TIGR02917 627 LLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAA 703 (899)
T ss_pred HHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCh
Confidence 55542 3344555555566666666666666666655532 2235555666666666666666666666665542 3345
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
..+..++..+.+.|++++|+..|+++.+.++. ...+..++.++...|++++|++.++++....|. +..++..++..|
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~ 780 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKRAPS--SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 55666666666667777777777766665433 355556666667777777777777766666665 556667777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCcch
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQTRGGAEY 810 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~ 810 (846)
...|++++|.+.|+++++ ..| +..++..++..|...|+ .+|+.+++++.+. .| ++..+..++..+...|++++
T Consensus 781 ~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776 556 44566677777777777 6677777777653 33 34455566666777777777
Q ss_pred HHHHHHHHHHHhh
Q 003122 811 AAIIQERIESLRM 823 (846)
Q Consensus 811 a~~~~~~l~~l~~ 823 (846)
|..+++++.++.+
T Consensus 856 A~~~~~~a~~~~~ 868 (899)
T TIGR02917 856 ALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHhhCC
Confidence 7777777766543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.6e-30 Score=314.12 Aligned_cols=638 Identities=11% Similarity=0.049 Sum_probs=474.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHH----------
Q 003122 129 FLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETY---------- 198 (846)
Q Consensus 129 ~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------- 198 (846)
.-++.....++.+.|.+.++.+.... |.++.++..++.++.+.|+.++|...+++..+.. |+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhc
Confidence 34566667789999999999988765 6788899999999999999999999999998854 443222
Q ss_pred -------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 003122 199 -------NALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIV 271 (846)
Q Consensus 199 -------~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 271 (846)
..+...+.+.|++++|++.|+.+.+.+.+........+.......|+.++|++.++++.+..+. +...+..+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3345578889999999999999987643322222212222233468999999999999887533 66677888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCChH---H-----------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003122 272 LSAYKNGAQYSKALSYFELMKGTNIRPDTT---T-----------------HNIVIYCLVKLGQYDKAIDLFHSMREKRS 331 (846)
Q Consensus 272 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~-----------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 331 (846)
...+...|++++|++.++++...... +.. . +...+..+-.....+.|...+.++.....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 88899999999999999998754210 111 0 11111111112234455555555443222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhH
Q 003122 332 ECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCP-DIVSY 410 (846)
Q Consensus 332 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~ 410 (846)
+ |+.. .......+...|++++|+..|++.++.. +.+...+..+...|.+.|++++|+..|++..+..... ....+
T Consensus 267 d--p~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 267 D--PAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred C--cchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 2 2222 2234567788999999999999999863 3367788899999999999999999999988753221 11111
Q ss_pred ------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 411 ------------TSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIV 478 (846)
Q Consensus 411 ------------~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 478 (846)
..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|++.|+++++.. +.+..
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~ 420 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTN 420 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 223456788999999999999998874 4566778888999999999999999999999853 33455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--------ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 003122 479 SICTLLAACGRCGRKVNIDAVLLAAEMRDI--------KLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTY 550 (846)
Q Consensus 479 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 550 (846)
.+..+...+. .++.++|...+..+..... ......+..+...+...|++++|++.|++.++.. +-+...+
T Consensus 421 a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~ 498 (1157)
T PRK11447 421 AVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLT 498 (1157)
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 6666666664 4577888888765432210 0112345667788889999999999999999874 3356677
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---------HHH
Q 003122 551 TVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVI---------TYT 621 (846)
Q Consensus 551 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~ 621 (846)
..+...|.+.|++++|...++++++.. +.+...+..+...+...++.++|+..++.+......++.. .+.
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l 577 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVL 577 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHH
Confidence 888999999999999999999998764 5566666667777788999999999998875432222221 223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 622 AMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR 701 (846)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 701 (846)
.+...+...|+.++|+.+++. .+.+...+..+...+.+.|++++|+..|+++++..+. +...+..++.++...|
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 456778899999999999872 3455667788999999999999999999999998766 7888999999999999
Q ss_pred CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-------HHHHHHHHHHHHhcCCHH
Q 003122 702 DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-------FNTYSILLKNLLAAGNWR 774 (846)
Q Consensus 702 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~ 774 (846)
++++|++.++.+....|. +..++..++.++...|++++|.+++++++. ..|+ ...+..++..+.+.|+++
T Consensus 652 ~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~~~~~~~~~~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 652 DLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIP--QAKSQPPSMESALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred CHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhh--hCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 999999999999877776 677888899999999999999999999998 4432 236677788999999999
Q ss_pred HHHHHHHHHHH-CCCCC
Q 003122 775 KYIEVLQWMED-AGIQP 790 (846)
Q Consensus 775 ~A~~~~~~~~~-~g~~p 790 (846)
+|+..|++++. .|+.|
T Consensus 729 ~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 729 QALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHHHHhhcCCCC
Confidence 99999999864 34554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.3e-29 Score=304.16 Aligned_cols=639 Identities=13% Similarity=0.085 Sum_probs=482.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---------
Q 003122 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTY--------- 233 (846)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--------- 233 (846)
.-..++.....++.+.|.+.+.++.... +.|+..+..++..+.+.|+.++|.+.++++.+..+. +....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhc
Confidence 4456677888999999999999998743 345888889999999999999999999999987532 32222
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHH
Q 003122 234 -------NNLINACGSTGNWREALKVCKKMTENGVGPDLV-THNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNI 305 (846)
Q Consensus 234 -------~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 305 (846)
..+...+...|++++|++.|+++...+. |+.. ....+.......|+.++|++.|+++.+.. +.+...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3334568899999999999999987643 2322 22222222345699999999999999874 446778889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003122 306 VIYCLVKLGQYDKAIDLFHSMREKRSECL--------------P---DIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGL 368 (846)
Q Consensus 306 li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 368 (846)
+...+...|+.++|+..++++........ + ....+...+..+-.....+.|...+.++.....
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999875322100 0 001111112222222334556666666544432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-CHHHH--
Q 003122 369 KPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKP-NLVSY-- 445 (846)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~-- 445 (846)
.|+... ......+...|++++|+..|++.++.. +.+...+..|...|.+.|++++|+..|++..+..... +...|
T Consensus 267 dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 267 DPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred CcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 333322 234567788999999999999998853 2367889999999999999999999999998764221 11112
Q ss_pred ----------HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHH
Q 003122 446 ----------SALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAY 515 (846)
Q Consensus 446 ----------~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 515 (846)
......+.+.|++++|+..|+++++.. +.+...+..+...+...|+.++|...|+.+.... +.+..++
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 123456788999999999999999864 4456777888999999999999999999999764 3456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCC--------CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 516 NSAIGSYMNVGEYEKAIALYKCMKKRKVM--------PDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSS 587 (846)
Q Consensus 516 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 587 (846)
..+...|. .++.++|+.+++.+...... -....+..+...+...|++++|++.++++++.. |.+...+..
T Consensus 423 ~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~ 500 (1157)
T PRK11447 423 RGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYR 500 (1157)
T ss_pred HHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 77777774 56789999988776432100 011234556777889999999999999999875 557788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHH
Q 003122 588 VISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI---------ACSAL 658 (846)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---------~~~~l 658 (846)
++..|.+.|++++|...++++.+.. +.+...+..+...+...+++++|+..++++......++.. .+..+
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 9999999999999999999998753 3346666666667788999999999998865422222211 23345
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 003122 659 MRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRI 738 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 738 (846)
...+...|+.++|+.+++. .+ .+...+..++..+...|++++|+..++++....|. ++.++..++.+|...|++
T Consensus 580 a~~l~~~G~~~eA~~~l~~----~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ----QP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh----CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCH
Confidence 6778899999999999872 23 36677888999999999999999999999998888 788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHHhcCCcchHH
Q 003122 739 ESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-----YGMFRDIVSFAQTRGGAEYAA 812 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~ 812 (846)
++|++.++++++ ..|+ ...+..++.++.+.|++++|.+++++++...-... ...+..++.++...|+.++|.
T Consensus 654 ~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 654 AAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred HHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999998 8885 55788889999999999999999999987432111 135677788899999999999
Q ss_pred HHHHHHHH
Q 003122 813 IIQERIES 820 (846)
Q Consensus 813 ~~~~~l~~ 820 (846)
..|++...
T Consensus 732 ~~y~~Al~ 739 (1157)
T PRK11447 732 ETYKDAMV 739 (1157)
T ss_pred HHHHHHHh
Confidence 99998854
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=4.2e-27 Score=270.38 Aligned_cols=618 Identities=11% Similarity=0.025 Sum_probs=413.8
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 003122 132 KEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQW 211 (846)
Q Consensus 132 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 211 (846)
..+...|++++|+..|+.+.+.. |.++.++..|...|.+.|+.++|+..+++..+. .|+...|..++..+ +++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~ 124 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVE 124 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccC
Confidence 33445599999999999999876 667889999999999999999999999999985 46555555544333 899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH-HHHHHcCCCHH
Q 003122 212 RWAMNIFDDMLRAAVAPSRSTYNNLINA--------CGSTGNWREALKVCKKMTENGVGPDLVTHNIV-LSAYKNGAQYS 282 (846)
Q Consensus 212 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~g~~~ 282 (846)
++|..+|+++.+..+ -+..++..+... |.+. +.|.+.++ .......|+..+.... ...|...++++
T Consensus 125 ~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 125 VKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred hhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 999999999998753 355666666655 5554 55555555 4333344445544444 89999999999
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 283 KALSYFELMKGTNIRPDTTTHNIVIYCLVK-LGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFN 361 (846)
Q Consensus 283 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 361 (846)
+|+.++.++.+.+. .+......|..+|.. .++ +++..+++...+ .|...+..++..|.+.|+.++|..+++
T Consensus 200 ~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk------~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 200 QADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIF------TDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc------cCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999863 355667777788888 477 888888654222 478899999999999999999999999
Q ss_pred HHHHcCCC-CCHHHHHHH------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 003122 362 TMLAEGLK-PNIVSYNAL------------------------------MAAYASHGMSKEALSVFNEIKKNGLCPDIVSY 410 (846)
Q Consensus 362 ~m~~~g~~-p~~~~~~~l------------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 410 (846)
++...... |...+|..+ +..+.+.+.++.++++. .+.|....
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~- 344 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM- 344 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH-
Confidence 97654222 333333222 33344444444333331 12233222
Q ss_pred HHHHHHH--HhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHH
Q 003122 411 TSLLNAY--GRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQD-G-IEPNIVSICTLLAA 486 (846)
Q Consensus 411 ~~ll~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g-~~~~~~~~~~ll~~ 486 (846)
..++.+ ...+...++...+..|.... +-+....-.+.-...+.|+.++|..+|+..... + ...+......++..
T Consensus 345 -~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 345 -LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred -HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 122222 23355666666666666542 235555555555567788888888888888762 1 12334445567777
Q ss_pred HHhcCCH---HHHHHH----------------------H---HHHHhCCCcc--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 487 CGRCGRK---VNIDAV----------------------L---LAAEMRDIKL--NTVAYNSAIGSYMNVGEYEKAIALYK 536 (846)
Q Consensus 487 ~~~~g~~---~~a~~~----------------------~---~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 536 (846)
|.+.+.. .++..+ . ...... .+. +...|..+..++.. ++.++|+..|.
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 7666552 222221 1 111111 123 56667777776665 67777877777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003122 537 CMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD 616 (846)
Q Consensus 537 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 616 (846)
+.... .|+......+...+...|++++|...++++... +|+...+..++.++.+.|++++|...+++.++.+ +.+
T Consensus 501 ~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~ 575 (987)
T PRK09782 501 QAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGD 575 (987)
T ss_pred HHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Ccc
Confidence 66655 355444334444456778888888888776553 3444555666777777888888888887777653 222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
...+..+...+...|++++|...+++.++ ..|+...+..+..++.+.|++++|+..++++++..|. +...+..++.+
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~a 652 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 33333444444455888888888888877 4567777777777788888888888888888877665 66677777777
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHhcCCHHH
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF-NTYSILLKNLLAAGNWRK 775 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 775 (846)
+...|++++|+..++++....|. ++.++..++.++...|++++|+..|+++++ +.|+. .+....+....+..+++.
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHH
Confidence 88888888888888887777776 667777888888888888888888888887 77755 366666777777777777
Q ss_pred HHHHHHHHHHCCCCCCHH
Q 003122 776 YIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 776 A~~~~~~~~~~g~~p~~~ 793 (846)
|.+.+++... +.|+..
T Consensus 730 a~~~~~r~~~--~~~~~~ 745 (987)
T PRK09782 730 LHEEVGRRWT--FSFDSS 745 (987)
T ss_pred HHHHHHHHhh--cCccch
Confidence 7777777665 444443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.98 E-value=2e-25 Score=256.52 Aligned_cols=615 Identities=12% Similarity=-0.029 Sum_probs=453.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 168 RLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWR 247 (846)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 247 (846)
..+...|++++|+..|+...+.. +-+..++..|...|.+.|++++|+..+++..+.. |+...|..++..+ ++++
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~ 125 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEV 125 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccCh
Confidence 33445599999999999999854 3447888999999999999999999999999874 4434344433323 8999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHH--------HHcCCCHHHHHHHHHHHHhCCCCCChHHHHHH-HHHHHhcCCHHH
Q 003122 248 EALKVCKKMTENGVGPDLVTHNIVLSA--------YKNGAQYSKALSYFELMKGTNIRPDTTTHNIV-IYCLVKLGQYDK 318 (846)
Q Consensus 248 ~A~~~~~~~~~~g~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~ 318 (846)
+|..+++++....+. +..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++
T Consensus 126 kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 126 KSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred hHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 999999999987543 45555555554 5555 55555555 4433334455555555 899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 319 AIDLFHSMREKRSECLPDIVTFTSIIHLYSV-NGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNE 397 (846)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (846)
|++++.++.+.++. +......|..+|.+ .++ +++..+++.. ++-+...+..++..|.+.|+.++|..++++
T Consensus 201 Ai~lL~~L~k~~pl---~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~ 272 (987)
T PRK09782 201 ADTLYNEARQQNTL---SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIE 272 (987)
T ss_pred HHHHHHHHHhcCCC---CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999987665 66667778888888 477 8888886642 335788899999999999999999999998
Q ss_pred HHHCCCC-CCHhhH------------------------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHH
Q 003122 398 IKKNGLC-PDIVSY------------------------------TSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYS 446 (846)
Q Consensus 398 m~~~g~~-p~~~~~------------------------------~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 446 (846)
+...-.. |+..++ ..++..+.+.++++-+.++.. +.|....
T Consensus 273 ~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-- 344 (987)
T PRK09782 273 NKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM-- 344 (987)
T ss_pred CcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--
Confidence 7643211 222222 122455566666665554422 2333332
Q ss_pred HHHHHH--HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCccCHHHHHHHHHHH
Q 003122 447 ALIDAY--GSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMR--DIKLNTVAYNSAIGSY 522 (846)
Q Consensus 447 ~li~~~--~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~ 522 (846)
..+... ...+...++...++.|.+.. +-+......+.-...+.|+.++|..++...... +...+......++..|
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 122222 23467778888888887752 335566666666677899999999999988763 1233455666788888
Q ss_pred HhcCC---HHHHHHH-------------------------HHHHhhCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003122 523 MNVGE---YEKAIAL-------------------------YKCMKKRKVMP--DSVTYTVLISSCCRLSRYSEALGFLDE 572 (846)
Q Consensus 523 ~~~g~---~~~A~~~-------------------------~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 572 (846)
.+.+. ..++..+ +...... .++ +...|..+..++.. ++.++|+..+.+
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 77765 3333333 2222221 133 56677778777766 899999998888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 003122 573 MMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD- 651 (846)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~- 651 (846)
..... |+......++.++...|++++|...|+++... +|+...+..++..+.+.|+.++|...+++.++. .|+
T Consensus 502 Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~ 575 (987)
T PRK09782 502 AEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGD 575 (987)
T ss_pred HHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcc
Confidence 88753 55555555566667999999999999998764 455666778888899999999999999999985 344
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
...+..+...+...|++++|+..++++++..+ +...+..++.++.+.|++++|+..++++....|. +..+++.++.+
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~a 652 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 33444444555667999999999999998665 5788899999999999999999999999999998 77899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCcc
Q 003122 732 LGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSY-GMFRDIVSFAQTRGGAE 809 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~ 809 (846)
+...|+.++|+..++++++ +.| +...+..++.+|...|++++|+..++++.+ +.|+. .+....+........+.
T Consensus 653 L~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~ 728 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFR 728 (987)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHH
Confidence 9999999999999999999 999 466999999999999999999999999987 56765 35556677777777777
Q ss_pred hHHHHHHHHHHHhhcc
Q 003122 810 YAAIIQERIESLRMKS 825 (846)
Q Consensus 810 ~a~~~~~~l~~l~~~~ 825 (846)
.+.+.+++.-.+....
T Consensus 729 ~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 729 RLHEEVGRRWTFSFDS 744 (987)
T ss_pred HHHHHHHHHhhcCccc
Confidence 7777777776665543
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=2.8e-27 Score=238.88 Aligned_cols=379 Identities=16% Similarity=0.138 Sum_probs=265.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 003122 408 VSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSIC-TLLAA 486 (846)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~ll~~ 486 (846)
.+|..+.+.+-..|++++|+..++.+++.. +.....|..+..++...|+.+.|...|.+.++. .|+..... .+...
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 444445555555555555555555554442 223344555555555555555555555555542 34333222 22222
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHhH
Q 003122 487 CGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPD-SVTYTVLISSCCRLSRYSE 565 (846)
Q Consensus 487 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 565 (846)
+...|++.+|...+.++++.. +.-.++|+.|...+...|+...|+..|++..+. .|+ ...|..|...|-..+.+++
T Consensus 194 lka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 333455555555555554442 224566788888888888888888888888876 343 4567788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 566 ALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEME 644 (846)
Q Consensus 566 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (846)
|...|..+.... |...+++..+...|..+|+++-|+..|++.++. .|+ ...|+.|..++-..|+..+|...|.+.+
T Consensus 271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 888888887753 455677777888888888888888888888874 577 6788888888888888888888888888
Q ss_pred HCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchh
Q 003122 645 TNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIG 723 (846)
Q Consensus 645 ~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 723 (846)
. +.|+ ..+.+.|...|...|..++|..+|+++.+..+. -...++.++.+|..+|++++|+..|+.+....|. -..
T Consensus 348 ~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAd 423 (966)
T KOG4626|consen 348 R--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FAD 423 (966)
T ss_pred H--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHH
Confidence 7 4454 557788888888888888888888888886555 4566778888888888888888888888888877 667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHH
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG-MFRDIVSF 801 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~ 801 (846)
+|++++..|...|+.+.|++.+.+++. ++|... ++..|+.+|...|+..+|+..|+.+++ ++||.. .+-+++..
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence 888888888888888888888888888 888544 888888888888888888888888876 677744 44455444
Q ss_pred HH
Q 003122 802 AQ 803 (846)
Q Consensus 802 ~~ 803 (846)
+.
T Consensus 500 lq 501 (966)
T KOG4626|consen 500 LQ 501 (966)
T ss_pred HH
Confidence 33
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-23 Score=223.95 Aligned_cols=649 Identities=14% Similarity=0.076 Sum_probs=468.5
Q ss_pred CCCHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCCh-----HHHHHHHHHHHH-----------cCCHHHHHHHHHHH
Q 003122 124 RKNFPFLIKEITQRGAINHSNQVFNWMKNQKNY-CARN-----DIYNMMIRLHAR-----------HNQIDKARGLFFEM 186 (846)
Q Consensus 124 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~-----~~~~~li~~~~~-----------~g~~~~A~~~~~~~ 186 (846)
.+.+..+..+|.+.|..++.+.+.+...-..+. -.+. .+++.+...+.. ...+..|..+|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 345677888999999999999999876621110 0011 123333333322 12234455555544
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC
Q 003122 187 QKWRCKPDAETYNALISAHGRAGQ--WRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENG--VG 262 (846)
Q Consensus 187 ~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g--~~ 262 (846)
-......+. ++..-...|...|. ++.|...|...++.. ++|...+-.=.......|++..|+.+|....... ..
T Consensus 121 ~ki~m~~~~-~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 121 DKIDMYEDS-HLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HHhhccCcc-hhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 331111111 11111112223333 589999999988864 3344444333334446679999999999977543 34
Q ss_pred CChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCCCHHH
Q 003122 263 PDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKL---GQYDKAIDLFHSMREKRSECLPDIVT 339 (846)
Q Consensus 263 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~ 339 (846)
||+.. .+...+.+.++.+.|+..|....+.+. .++.++-.|...-... ..+..+..++...-...+. |+++
T Consensus 199 aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~---nP~~ 272 (1018)
T KOG2002|consen 199 ADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE---NPVA 272 (1018)
T ss_pred CCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC---CcHH
Confidence 45432 233556789999999999999998742 2333333333332332 3456778888777766554 7889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhHHHHHH
Q 003122 340 FTSIIHLYSVNGQIENCKGVFNTMLAEGLK--PNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDI--VSYTSLLN 415 (846)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~ 415 (846)
.+.|...|.-.|+++.+..+...+...... .-...|-.+..+|-..|++++|...|.+..+. .+|. ..+.-|..
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhH
Confidence 999999999999999999999998875311 11235888999999999999999999888764 3444 44566889
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 416 AYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNG----LLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCG 491 (846)
Q Consensus 416 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 491 (846)
+|.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..++|..++.+..+.- +.|...|..+...+....
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC
Confidence 9999999999999999998763 556778888888887765 5678888888887753 566777777777766544
Q ss_pred CHHHHHHHHHHH----HhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCH------HHHHHHHHHHH
Q 003122 492 RKVNIDAVLLAA----EMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKR---KVMPDS------VTYTVLISSCC 558 (846)
Q Consensus 492 ~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p~~------~~~~~li~~~~ 558 (846)
-+ .+..++..+ ...+..+.+...|.+...+...|++++|...|...... ...+|. .+-..+...+-
T Consensus 429 ~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 429 PW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred hH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 33 335555443 34455678899999999999999999999999988764 112232 23344566667
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 559 RLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACA 638 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (846)
..++.+.|.+.|..+++.. |.-...|..++.+....++..+|...++...... ..++..+..++..+.....|..|.+
T Consensus 508 ~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccccc
Confidence 7889999999999999863 5556677777755556788999999999998853 5567888889999999999999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 639 LFLEMETNN-IEPDSIACSALMRAFNK------------GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 639 ~~~~~~~~g-~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 705 (846)
-|+...+.- ..+|..+..+|++.|.+ .+..++|+++|.++++.+|. +...-+.++.+++..|++.+
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchH
Confidence 888877632 34688888888886653 34568899999999998776 77777889999999999999
Q ss_pred HHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 706 TIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 706 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
|+.+|.+..+.... ...+|.+++++|..+|++..|+++|+.++++-..- +..+...|+.++++.|.|.+|.+.+..+.
T Consensus 665 A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 665 ARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99999998766553 45689999999999999999999999999864333 56688899999999999999999998887
Q ss_pred HCCCCCC
Q 003122 785 DAGIQPS 791 (846)
Q Consensus 785 ~~g~~p~ 791 (846)
. ..|+
T Consensus 744 ~--~~p~ 748 (1018)
T KOG2002|consen 744 H--LAPS 748 (1018)
T ss_pred H--hCCc
Confidence 6 4554
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-26 Score=233.92 Aligned_cols=388 Identities=16% Similarity=0.173 Sum_probs=286.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHH-HHHHHH
Q 003122 374 SYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYS-ALIDAY 452 (846)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~ 452 (846)
+|..+...+-..|++++|+.+++.+.+... .....|..+..++...|+.+.|...|.+..+. .|+..... .+...+
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 455555555555555555555555544311 12344555555555555555555555444433 23333222 222233
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHH
Q 003122 453 GSNGLLAEAVEVFREMEQDGIEPN-IVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKA 531 (846)
Q Consensus 453 ~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 531 (846)
-..|++.+|...|.++++. .|. ...|+.|.-.+-..|+...|...|.++...+ +.-..+|-.|...|...+.++.|
T Consensus 195 ka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHH
Confidence 3345555555555555543 222 2344444445555555555555555554442 22456788889999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003122 532 IALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMS 611 (846)
Q Consensus 532 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (846)
+..|....... +...+.+..+...|..+|.++.|+..|++.++.. |.-...|+.|..++-..|++.+|...|.+.+..
T Consensus 272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99999887762 3356778888888999999999999999999864 556789999999999999999999999999985
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 003122 612 GCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSI 689 (846)
Q Consensus 612 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 689 (846)
.|+ ....+.|...|...|.+++|..+|....+ +.|. ...++.|...|-++|+.++|+..|+++++..+. -...
T Consensus 350 --~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda 424 (966)
T KOG4626|consen 350 --CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADA 424 (966)
T ss_pred --CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHH
Confidence 455 78999999999999999999999999998 6777 668999999999999999999999999985544 4578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLL 768 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~ 768 (846)
+..++..|-..|+...|++.+.++...+|. -..++++|+..|...|++.+|++.|+.+++ +.||.. +|-.++.++.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 899999999999999999999999999998 678999999999999999999999999999 999865 8888988877
Q ss_pred hcCCHHHHH
Q 003122 769 AAGNWRKYI 777 (846)
Q Consensus 769 ~~g~~~~A~ 777 (846)
-...|.+--
T Consensus 502 ~vcdw~D~d 510 (966)
T KOG4626|consen 502 IVCDWTDYD 510 (966)
T ss_pred HHhcccchH
Confidence 666665533
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.2e-21 Score=205.43 Aligned_cols=645 Identities=12% Similarity=0.041 Sum_probs=463.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhC------CCCCC-HHHHHHHHHHHHhc-----------CChHHHHHHHHHH
Q 003122 160 NDIYNMMIRLHARHNQIDKARGLFFEMQKW------RCKPD-AETYNALISAHGRA-----------GQWRWAMNIFDDM 221 (846)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~-~~~~~~li~~~~~~-----------g~~~~A~~~~~~~ 221 (846)
-++|..+...|.+.|..++.+.+++..... +...+ ...++.|...+... ..+..|..+|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 368999999999999999999999887621 11111 11222233333222 2234455555544
Q ss_pred HHcCCCCCH-HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhC--CC
Q 003122 222 LRAAVAPSR-STYNNLINACGSTGN--WREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGT--NI 296 (846)
Q Consensus 222 ~~~g~~~~~-~~~~~ll~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~ 296 (846)
-+.....+. .++.. ..|...|. ++.|.+.|........ +|+...-.-.......+++..|+.+|...... ..
T Consensus 121 ~ki~m~~~~~l~~~~--~~~l~~~~~~~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~ 197 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQR--GFLLLEGDKSMDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPAC 197 (1018)
T ss_pred HHhhccCcchhhhhh--hhhhhcCCccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc
Confidence 332211111 11111 11223333 6899999999887643 35555444445556779999999999997644 33
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHH
Q 003122 297 RPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVN---GQIENCKGVFNTMLAEGLKPNIV 373 (846)
Q Consensus 297 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~ 373 (846)
.||+. -.+..++.+.|+.+.|+..|.++++.+|. ++.++..|...-... ..+..+..++....... .-|++
T Consensus 198 ~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~---~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~ 271 (1018)
T KOG2002|consen 198 KADVR--IGIGHCFWKLGMSEKALLAFERALQLDPT---CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPV 271 (1018)
T ss_pred CCCcc--chhhhHHHhccchhhHHHHHHHHHhcChh---hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcH
Confidence 44443 34457788999999999999999987764 555555555444433 34566777777766553 44677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH--HHHHHHH
Q 003122 374 SYNALMAAYASHGMSKEALSVFNEIKKNGLCP--DIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNL--VSYSALI 449 (846)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li 449 (846)
..+.|...|.-.|+++.+..+...+......- -...|..+.++|-..|++++|...|.+.... .++. ..+--+.
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLG 349 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchh
Confidence 88899999999999999999999988753221 1345888999999999999999999887765 3333 3455678
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhc
Q 003122 450 DAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCG----RKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNV 525 (846)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 525 (846)
..|...|+++.+...|+...+.. +.+..+...|...|...+ ..+.|..++....... +.|...|-.+...+.+.
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT 427 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc
Confidence 89999999999999999999863 455667777777776664 5677777777777664 55788888888887655
Q ss_pred CCHHHHHHHHHHHh----hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC---CCCCC------HHHHHHHHHHH
Q 003122 526 GEYEKAIALYKCMK----KRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL---KIPLT------NQVYSSVISAY 592 (846)
Q Consensus 526 g~~~~A~~~~~~~~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~------~~~~~~l~~~~ 592 (846)
.-+. ++..|.... ..+..+.....+.+.......|.+.+|...|..+... ...++ ..+-..+...+
T Consensus 428 d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred ChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 4443 376665543 3455577788999999999999999999999998754 11222 23445567778
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003122 593 SKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKV 671 (846)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 671 (846)
...++.+.|.+.|..+++. -|. +..|--++......++..+|...+...... ...++.++..++..+.+...+..|
T Consensus 507 E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhccc
Confidence 8889999999999999985 355 566666665555678899999999999874 345667788888889888889889
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 003122 672 LLVAEFMREQ-DITFSDSIFFEMVLACSL------------LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRI 738 (846)
Q Consensus 672 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 738 (846)
.+-|+...+. ...+|..+...++..+.. .+..++|+++|.++...+|. ++.+-|.++-+++..|++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCc
Confidence 8877777652 223466777777776553 34678999999999999998 778889999999999999
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCcchHHHHHHH
Q 003122 739 ESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PSYGMFRDIVSFAQTRGGAEYAAIIQER 817 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 817 (846)
.+|..+|.++.+.+ .-+..+|..++++|..+|+|..|+++|+.....-.+ .+..+..-|+..+...+...++.+...+
T Consensus 663 ~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 663 SEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred hHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999832 224568999999999999999999999997765443 3566777788888888888877777766
Q ss_pred HHHHhh
Q 003122 818 IESLRM 823 (846)
Q Consensus 818 l~~l~~ 823 (846)
...+..
T Consensus 742 a~~~~p 747 (1018)
T KOG2002|consen 742 ARHLAP 747 (1018)
T ss_pred HHHhCC
Confidence 655443
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.9e-20 Score=213.02 Aligned_cols=430 Identities=13% Similarity=0.044 Sum_probs=276.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 301 TTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMA 380 (846)
Q Consensus 301 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 380 (846)
..+......+.+.|++++|+..|++.+... |+...|..+..+|.+.|++++|+..++..++.. +.+...|..+..
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~----p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~ 202 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECK----PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 345566667777777777777777776533 455666677777777777777777777776652 223446666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHH
Q 003122 381 AYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAE 460 (846)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 460 (846)
+|...|++++|+..|......+-..+. ....++..+.. ..+........+.. +.+...+..+.. |........
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCc
Confidence 777777777777666555432111111 11111111111 11111111111111 111111111111 111000000
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC-HHHHHHHHHH---HHhcCCHHHHHHHHH
Q 003122 461 AVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLN-TVAYNSAIGS---YMNVGEYEKAIALYK 536 (846)
Q Consensus 461 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~---~~~~g~~~~A~~~~~ 536 (846)
+..-+.+ .... .+. ...+..+... ....+.+++|++.|+
T Consensus 276 ~~~~~~~-----------------------------------~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~ 318 (615)
T TIGR00990 276 RPAGLED-----------------------------------SNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFE 318 (615)
T ss_pred chhhhhc-----------------------------------cccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 0000000 0000 000 0001111111 123467889999998
Q ss_pred HHhhCC-CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003122 537 CMKKRK-VMP-DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCS 614 (846)
Q Consensus 537 ~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (846)
...+.+ ..| +...+..+...+...|++++|+..++++++.. |.....|..++.++...|++++|+..|+++++.. +
T Consensus 319 ~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p 396 (615)
T TIGR00990 319 KALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-S 396 (615)
T ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 888754 123 44567777888888999999999999988864 4456688888888999999999999999988753 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 615 PDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEM 693 (846)
Q Consensus 615 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 693 (846)
.+...|..++..+...|++++|+..|++.++ +.|+ ...+..++.++.+.|++++|+..|+++++..+. +...+..+
T Consensus 397 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~l 473 (615)
T TIGR00990 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYY 473 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 3478888899999999999999999999988 4454 667778888899999999999999999886654 67788888
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccch------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH-HHHHHHHHH
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSI------GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF-NTYSILLKN 766 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~ 766 (846)
+.++...|++++|+..++++....|.... ..++..+..+...|++++|.++++++++ +.|+. .++..++.+
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~ 551 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQL 551 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 99999999999999999988766654221 1122222334446999999999999999 88854 478889999
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 003122 767 LLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~~ 786 (846)
|...|++++|+..|+++.+.
T Consensus 552 ~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 552 LLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999874
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=6.6e-20 Score=208.64 Aligned_cols=256 Identities=12% Similarity=-0.000 Sum_probs=217.3
Q ss_pred hcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 003122 559 RLSRYSEALGFLDEMMDLK--IPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEK 635 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 635 (846)
..+++++|...|+++++.+ .+.....+..++..+...|++++|+..|++.+.. .|+ ...|..++..+...|++++
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 3578999999999999864 2345567888899999999999999999999985 455 6789999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 636 ACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 636 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
|+..|+++++. .| +..+|..++..+...|++++|+..|+++++.++. +...+..++.++...|++++|+..++++.
T Consensus 384 A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 384 AEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999984 44 4778999999999999999999999999998765 67778889999999999999999999998
Q ss_pred cCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH-HHH------HHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 003122 715 PSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF-NTY------SILLKN-LLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 715 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~------~~l~~~-~~~~g~~~~A~~~~~~~~~~ 786 (846)
...|. ++.+++.++.++...|++++|++.|+++++ +.|+. ..+ ...+.. +...|++++|+.+++++++.
T Consensus 461 ~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 461 KNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 88887 778999999999999999999999999999 77742 111 112223 44479999999999999874
Q ss_pred CCCCCH-HhHHHHHHHHHhcCCcchHHHHHHHHHHHhhc
Q 003122 787 GIQPSY-GMFRDIVSFAQTRGGAEYAAIIQERIESLRMK 824 (846)
Q Consensus 787 g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~ 824 (846)
.|+. ..+..++..+...|++++|...+++..++.+.
T Consensus 538 --~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 538 --DPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred --CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 4554 46788899999999999999999999887654
No 19
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=2e-16 Score=168.97 Aligned_cols=666 Identities=13% Similarity=0.073 Sum_probs=411.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 003122 131 IKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQ 210 (846)
Q Consensus 131 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 210 (846)
.+.+..+|++++|.+++..+.++. +..+..|.+|..+|-+.|+.+++...+--+--.. +.|..-|..+.....+.|.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 455566799999999999999987 6788899999999999999999998876655432 5567899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH----HHHHHHcCCCHHHHHH
Q 003122 211 WRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNI----VLSAYKNGAQYSKALS 286 (846)
Q Consensus 211 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~----ll~~~~~~g~~~~A~~ 286 (846)
++.|.-.|.+.++..+ ++...+---...|-+.|+...|..-|.++.....+.|..-+.. .+..+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999753 3444444556788899999999999999998754333333333 3455677777799999
Q ss_pred HHHHHHhC-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------------------CCCCHHHH
Q 003122 287 YFELMKGT-NIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSE-------------------------CLPDIVTF 340 (846)
Q Consensus 287 ~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------------------~~~~~~~~ 340 (846)
.++..... +-..+...+++++..+.+...++.|......+...... ..++...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 99988762 22335667899999999999999999988887652111 1111122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 003122 341 TSIIHLYSVNGQIENCKGVFNTMLAEGLK--PNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYG 418 (846)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (846)
--+.-++......+....+.......... -+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 01122233333344444444444444422 3345788888888888999999999888887654446678888888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhc
Q 003122 419 RSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREME--------QDGIEPNIVSICTLLAACGRC 490 (846)
Q Consensus 419 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~~ll~~~~~~ 490 (846)
..|.+++|.+.|+...... +.+...--.|...+.+.|+.++|.+.+..+. ..++.|+..........+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 8899999998888888763 3344555567777888889998888888854 223445555555555566666
Q ss_pred CCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 003122 491 GRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFL 570 (846)
Q Consensus 491 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 570 (846)
|+.++-......++.. ......+. -+..++... .....+..-...+...++.+-.+.++.....+-.
T Consensus 540 gk~E~fi~t~~~Lv~~------~~~~~~~f-----~~~~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l 606 (895)
T KOG2076|consen 540 GKREEFINTASTLVDD------FLKKRYIF-----PRNKKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKAL 606 (895)
T ss_pred hhHHHHHHHHHHHHHH------HHHHHHhc-----chHHHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcc
Confidence 6666644444333321 00000000 000000000 0000001112222223333333333221111111
Q ss_pred HH------HHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHH
Q 003122 571 DE------MMDLKIPLTN--QVYSSVISAYSKQGLIAEAESMFNMMKMSGC-SPDV----ITYTAMLHAYNTAEDWEKAC 637 (846)
Q Consensus 571 ~~------~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~A~ 637 (846)
.. ....+...+. ..+.-++..+++.+++++|..+...+..... .-+. ..-...+.+.+..+++.+|.
T Consensus 607 ~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~ 686 (895)
T KOG2076|consen 607 SDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAF 686 (895)
T ss_pred cchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 11 1111221111 3455667778888888888888877766321 1121 12244455666778888888
Q ss_pred HHHHHHHHC-CC--CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003122 638 ALFLEMETN-NI--EPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQM 713 (846)
Q Consensus 638 ~~~~~~~~~-g~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (846)
..++.|+.. +. .|. ...|+...+.+.+.|+-.--..++..+......-+.......+......+.+.-|+..+-++
T Consensus 687 ~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra 766 (895)
T KOG2076|consen 687 SYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRA 766 (895)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHH
Confidence 888888763 11 122 33455555555565554444444544444333322333344455566778888888888877
Q ss_pred ccCCCc-cchhhHHHHHHHH--------HhcCCHHHHHHHHHHHHhcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 714 EPSFHV-VSIGLLNQLLHLL--------GKSGRIESMMKLFFKIVSSGAEA---NFNTYSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 714 ~~~~~~-~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
....|. |.+.....+...- .++-.+-++...+.+..+ +.. -..+.++++++|...|-..-|+.+|+
T Consensus 767 ~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~--lR~~~~~QEa~YNigRayh~~gl~~LA~~YYe 844 (895)
T KOG2076|consen 767 FRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKE--LRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYE 844 (895)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 766665 2222222221111 123345566667766665 333 23478888999999999999999999
Q ss_pred HHHHCCCCC-------CHH----hHHHHHHHHHhcCCcchHHHHHHH
Q 003122 782 WMEDAGIQP-------SYG----MFRDIVSFAQTRGGAEYAAIIQER 817 (846)
Q Consensus 782 ~~~~~g~~p-------~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 817 (846)
++++....+ +.. ...++...|...|....|..|+++
T Consensus 845 kvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 845 KVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 988642111 111 345667778888888888887764
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=4.1e-19 Score=200.96 Aligned_cols=330 Identities=10% Similarity=-0.020 Sum_probs=166.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhC
Q 003122 376 NALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSN 455 (846)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 455 (846)
..++..+.+.|++++|..+++..+..... +...+..++......|++++|...++++.... +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 34555666777777777777777765322 33445555566666777777777777777653 44556666677777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 456 GLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALY 535 (846)
Q Consensus 456 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 535 (846)
|++++|+..++++.+.. +.+...+..+...+...|+.++|...+..+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 77777777777777642 222334444444555555555555555444333211 12222222 1234445555555554
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003122 536 KCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSP 615 (846)
Q Consensus 536 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 615 (846)
+.+.+... .++...+..++.++...|++++|+..++++.... +.
T Consensus 201 ~~~l~~~~-----------------------------------~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~ 244 (656)
T PRK15174 201 RALLPFFA-----------------------------------LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LD 244 (656)
T ss_pred HHHHhcCC-----------------------------------CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 44444321 1222223333344444455555555554444432 12
Q ss_pred CHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 003122 616 DVITYTAMLHAYNTAEDWEK----ACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIF 690 (846)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 690 (846)
+...+..+...|...|++++ |...|+++.+ ..|+ ..++..++..+.+.|++++|+..++++++..+. +...+
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~ 321 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVR 321 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 24444444444444454443 4455555544 2232 334444455555555555555555555544333 33344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 691 FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
..++.++...|++++|+..++++....|. ....+..++.++...|+.++|...|+++++
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555555555555555554444443 222333344445555555555555555555
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.6e-18 Score=200.64 Aligned_cols=435 Identities=13% Similarity=0.068 Sum_probs=240.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003122 299 DTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNAL 378 (846)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 378 (846)
+.....-.+......|+.++|++++.+.....+ .+...+..+...+...|++++|..+|++.++.. +.+...+..+
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~---~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ---LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 444444555566667777777777777654222 245556777777777777777777777776652 2334455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCH
Q 003122 379 MAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLL 458 (846)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 458 (846)
+..+...|++++|+..++++.+.. +.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 667777777777777777776642 22344 6666777777777777777777777653 33455555566666677777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCH---HHHHHHH
Q 003122 459 AEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEY---EKAIALY 535 (846)
Q Consensus 459 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~ 535 (846)
++|++.++.+.. .|+.... +. ...+..... ..+.......+++ ++|++.+
T Consensus 167 e~Al~~l~~~~~---~p~~~~~---l~-------~~~~~~~~r--------------~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRD---LE-------ADAAAELVR--------------LSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHH---HH-------HHHHHHHHH--------------hhcccccChhHHHHHHHHHHHHH
Confidence 777777765543 2321000 00 000000000 0000001112223 5666666
Q ss_pred HHHhhC-CCCCCHH-HHH----HHHHHHHhcCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 536 KCMKKR-KVMPDSV-TYT----VLISSCCRLSRYSEALGFLDEMMDLKIP-LTNQVYSSVISAYSKQGLIAEAESMFNMM 608 (846)
Q Consensus 536 ~~~~~~-~~~p~~~-~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 608 (846)
+.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 666643 1122211 111 1122334556666666666666655321 111 1222355666666666666666666
Q ss_pred HHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003122 609 KMSGCSP---DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI-ACSALMRAFNKGGQPSKVLLVAEFMREQDIT 684 (846)
Q Consensus 609 ~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 684 (846)
....... ....+..+..++...|++++|..+++++.+. .|... .+. ... ..
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~---------------------~~~--~~ 353 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYG---------------------SPT--SI 353 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecC---------------------CCC--CC
Confidence 5432100 1233444555556666666666666666542 22110 000 000 01
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHH
Q 003122 685 FS---DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTY 760 (846)
Q Consensus 685 ~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~ 760 (846)
|+ ...+..++.++...|++++|++.++++....|. +..++..++.++...|+.++|++.++++++ +.|+ ...+
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~ 430 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLE 430 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHH
Confidence 12 123445566666677777777777776666666 466777777777777777777777777777 7774 4466
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 003122 761 SILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDI 798 (846)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 798 (846)
..++..+...|++++|..+++++++ ..|+......+
T Consensus 431 ~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~ 466 (765)
T PRK10049 431 VEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 6666677777777777777777766 45555544444
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.7e-20 Score=200.32 Aligned_cols=276 Identities=14% Similarity=0.141 Sum_probs=208.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 511 NTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPD---SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSS 587 (846)
Q Consensus 511 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 587 (846)
+..++..+...+...|++++|+..++.+...+..++ ...+..++..|...|++++|..+|+++.+.. +.+..++..
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 146 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQ 146 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHH
Confidence 445566667777777777777777777766432221 2346667777778888888888888877653 456677778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 003122 588 VISAYSKQGLIAEAESMFNMMKMSGCSPD----VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAF 662 (846)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 662 (846)
++.++.+.|++++|.+.++.+.+.+..++ ...+..++..+.+.|++++|...|+++.+. .|+ ...+..++..+
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 224 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHH
Confidence 88888888888888888888877542222 124556777778888888888888888873 343 55777788888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH
Q 003122 663 NKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM 742 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 742 (846)
.+.|++++|+++++++.+.++......+..++.+|...|++++|+..++++....|.. ..+..++..+.+.|++++|.
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~--~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA--DLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHhCCHHHHH
Confidence 8888888888888888876554334567778888888899999998888887776653 34578999999999999999
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 743 KLFFKIVSSGAEANFNTYSILLKNLLA---AGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 743 ~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
..++++++ ..|+...+..++..+.. .|+.++|+.++++|.+.+++|++.
T Consensus 303 ~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 303 ALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999999 78998888877777554 568999999999999988888776
No 23
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=9.2e-16 Score=157.36 Aligned_cols=612 Identities=13% Similarity=0.113 Sum_probs=441.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003122 139 AINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIF 218 (846)
Q Consensus 139 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 218 (846)
+..+|..+++.+++-+ |.++..|-+-.++--..|++..|+.+...--+ .|+.+...|.--| +..-.+.|..+.
T Consensus 266 DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe-~cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCE-ECPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHh-hCCchHHHHHHHH----hcCChHHHHHHH
Confidence 4455666666666544 44445555555555556666666665543322 1344445554332 233445555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 003122 219 DDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRP 298 (846)
Q Consensus 219 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~ 298 (846)
....+. ++.++..|.-.+. -..+...=.+++++.++. ++.++..|-. .......+.|..++....+. ++.
T Consensus 339 A~Avr~-~P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~ 408 (913)
T KOG0495|consen 339 ANAVRF-LPTSVRLWLKAAD---LESDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQ 408 (913)
T ss_pred HHHHHh-CCCChhhhhhHHh---hhhHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccc
Confidence 555553 2223333322221 112233334566666654 2224444433 33445566688888877764 222
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHH
Q 003122 299 DTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTML----AEGLKPNIVS 374 (846)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~ 374 (846)
+. -|.-+|.+..-++.|..++++..+.-+. +...|.+-...--.+|+.+...+++.+.+ ..|+..+...
T Consensus 409 s~----dLwlAlarLetYenAkkvLNkaRe~ipt---d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdq 481 (913)
T KOG0495|consen 409 SM----DLWLALARLETYENAKKVLNKAREIIPT---DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQ 481 (913)
T ss_pred hH----HHHHHHHHHHHHHHHHHHHHHHHhhCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHH
Confidence 22 2344566777888999999998876554 77788877777788888888888877654 3477888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 003122 375 YNALMAAYASHGMSKEALSVFNEIKKNGLCPD--IVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAY 452 (846)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 452 (846)
|..=...+-..|..-.+..+....+.-|+.-. ..||..-...|.+.+.++-|..+|....+- ++.+...|...+..-
T Consensus 482 Wl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~e 560 (913)
T KOG0495|consen 482 WLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHH
Confidence 88888888888888888888888887776532 467888888899999999999999888765 255667788777777
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHH
Q 003122 453 GSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAI 532 (846)
Q Consensus 453 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 532 (846)
-..|..++-..+|+++... ++-....+......+-..|++..|..++..+.... +.+...|.+.+.....+.+++.|.
T Consensus 561 k~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHH
Confidence 7789999999999999886 33444556666677778899999999999888775 337788888888899999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003122 533 ALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSG 612 (846)
Q Consensus 533 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (846)
.+|.+.... .|+...|.--+...--.++.++|.+++++.++. ++.-...|..+++.+.+.++++.|...|..-.+.
T Consensus 639 ~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~- 714 (913)
T KOG0495|consen 639 DLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK- 714 (913)
T ss_pred HHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-
Confidence 999988875 567777776666666788999999999998885 4666778889999999999999999998877764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 613 CSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFE 692 (846)
Q Consensus 613 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 692 (846)
|+..+..|-.|...--+.|+.-+|..++++..-.+ +-+...|...++.-.+.|+.+.|..+..++++.-+. +...|..
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaE 792 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAE 792 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHH
Confidence 44457788888888888899999999999988642 446778889999999999999999999999876544 6677777
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcC
Q 003122 693 MVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAG 771 (846)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g 771 (846)
-+....+.++--.+++.+++... ++.++..++..++...+++.|++-|.++++ ..||.. +|..+...+...|
T Consensus 793 aI~le~~~~rkTks~DALkkce~-----dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 793 AIWLEPRPQRKTKSIDALKKCEH-----DPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHhccCcccchHHHHHHHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhC
Confidence 77777777777777777777653 344667888899999999999999999999 889776 8888888899999
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 003122 772 NWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 772 ~~~~A~~~~~~~~~~g~~p~~ 792 (846)
.-++-.+++.+-.. ..|.-
T Consensus 866 ~eed~kev~~~c~~--~EP~h 884 (913)
T KOG0495|consen 866 TEEDQKEVLKKCET--AEPTH 884 (913)
T ss_pred CHHHHHHHHHHHhc--cCCCC
Confidence 88888888887765 34543
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=2.4e-18 Score=199.18 Aligned_cols=190 Identities=11% Similarity=0.009 Sum_probs=123.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHH
Q 003122 629 TAEDWEKACALFLEMETNNIE-PDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITF---SDSIFFEMVLACSLLRDWK 704 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~ 704 (846)
..|++++|+..|+++.+.+-. |+. ....+..+|...|++++|+.+|+++++..+.. .......++.++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 445555555555555543211 211 11113444555555555555555554432211 1123333444455555555
Q ss_pred HHHHHHHhhccCCC-------------ccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHh
Q 003122 705 TTIDLIKQMEPSFH-------------VVS-IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLA 769 (846)
Q Consensus 705 ~A~~~~~~~~~~~~-------------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 769 (846)
+|+++++.+....| ..+ ..++..++..+...|++++|++.+++++. ..| +...+..++..+..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 55555555544332 211 34567888999999999999999999999 889 55689999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q 003122 770 AGNWRKYIEVLQWMEDAGIQPSY-GMFRDIVSFAQTRGGAEYAAIIQERIESLRM 823 (846)
Q Consensus 770 ~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~ 823 (846)
.|++++|+..++++++ +.|+. ......+....+.++.++|...++++.+..+
T Consensus 406 ~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 406 RGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred cCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999999999999987 56764 4566667788889999999999988877543
No 25
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=1.5e-15 Score=155.79 Aligned_cols=611 Identities=12% Similarity=0.038 Sum_probs=468.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 173 HNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKV 252 (846)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 252 (846)
.+++.+|+.++....+.+ +.++..|.+-.+.=-..|++..|..+...=-+. ++.+..+|.-- ++....+.|..+
T Consensus 264 l~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHH
Confidence 456788888888888754 445667766666666677787777776554333 33455555433 355567777777
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003122 253 CKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSE 332 (846)
Q Consensus 253 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 332 (846)
.......-+ .++..| +.+---..+...=.+++++.++. ++.++..|... ....+.+.|.-++.+..+--+
T Consensus 338 vA~Avr~~P-~Sv~lW---~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAveccp- 407 (913)
T KOG0495|consen 338 VANAVRFLP-TSVRLW---LKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECCP- 407 (913)
T ss_pred HHHHHHhCC-CChhhh---hhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhcc-
Confidence 777766421 133333 33333334445556677777765 23344444333 345667779999998887433
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHCCCCCCHh
Q 003122 333 CLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNE----IKKNGLCPDIV 408 (846)
Q Consensus 333 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~ 408 (846)
.+...|.+ |.+..-++.|..+++...+. ++.+...|.+-...--.+|..+...+++++ +..+|...+..
T Consensus 408 --~s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 408 --QSMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred --chHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHH
Confidence 25555554 44556789999999998876 566778888877777888999888888766 44578888888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 409 SYTSLLNAYGRSQQPVKAREVFNMMRINNLKPN--LVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAA 486 (846)
Q Consensus 409 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 486 (846)
-|..=...+-..|..-.+..+....+.-|+... ..+|+.-.+.|.+.+.++-|..+|..+++- ++-+...|..+...
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ 559 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMF 559 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHH
Confidence 888888888888999999888888887765433 468888899999999999999999999885 34455667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 003122 487 CGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEA 566 (846)
Q Consensus 487 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 566 (846)
--..|..+....+|+.+...- +.....|......+-..|+...|..++....+.. +.+...|..-+........++.|
T Consensus 560 ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 560 EKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHH
Confidence 677899999999999998873 4567778888888889999999999999998874 33667888888888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 567 LGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMET 645 (846)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (846)
..+|.+.... .++..+|.--+...--.++.++|++++++.++. -|+ ...|..++..+-+.++.+.|...|..-.+
T Consensus 638 R~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 638 RDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 9999998874 588888888788778889999999999999985 466 56788889999999999999999988776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhH
Q 003122 646 NNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLL 725 (846)
Q Consensus 646 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 725 (846)
. ++-....|..|...=.+.|+.-.|..++++..-.+|+ +...|...+..-.+.|+.++|..+..++.++.|. +-..|
T Consensus 714 ~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LW 790 (913)
T KOG0495|consen 714 K-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLW 790 (913)
T ss_pred c-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhH
Confidence 3 3334667888888888999999999999999998887 8888999999999999999999999999999888 66778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHh
Q 003122 726 NQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG-MFRDIVSFAQT 804 (846)
Q Consensus 726 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~ 804 (846)
..-+.+..+.++-..+...+++ .+-|+.+....+..++...++++|.+.|.+++. +.||.+ ++.-...|...
T Consensus 791 aEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 791 AEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELR 863 (913)
T ss_pred HHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHH
Confidence 8888888788886666665554 455667777788889999999999999999987 456655 56667788899
Q ss_pred cCCcchHHHHHHHHHHHhh
Q 003122 805 RGGAEYAAIIQERIESLRM 823 (846)
Q Consensus 805 ~~~~~~a~~~~~~l~~l~~ 823 (846)
.|..++-++++.+...-.+
T Consensus 864 hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 864 HGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred hCCHHHHHHHHHHHhccCC
Confidence 9999999999988876443
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=9.1e-20 Score=197.28 Aligned_cols=304 Identities=16% Similarity=0.132 Sum_probs=233.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 003122 166 MIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPS---RSTYNNLINACGS 242 (846)
Q Consensus 166 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ll~~~~~ 242 (846)
....+...|++++|...|.++.+.+ +.+..++..+...+.+.|++++|+.+++.+.+.+..++ ..++..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445567788888888888887743 33456777788888888888888888888776532221 2456777888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----hHHHHHHHHHHHhcCCHHH
Q 003122 243 TGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPD----TTTHNIVIYCLVKLGQYDK 318 (846)
Q Consensus 243 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~ 318 (846)
.|++++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 888888888888887653 23567788888888888888888888888876543322 1245567778888999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 319 AIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEI 398 (846)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (846)
|...|+++.+..+. +..++..++..+.+.|++++|.++|+++...+......++..++.+|...|++++|...++++
T Consensus 199 A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 199 ARALLKKALAADPQ---CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHhHCcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998876544 566788888999999999999999999987642222456788889999999999999999998
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCC
Q 003122 399 KKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGS---NGLLAEAVEVFREMEQDGIEP 475 (846)
Q Consensus 399 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~g~~~ 475 (846)
.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.++++|.+.++.|
T Consensus 276 ~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 276 LEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 875 466666788899999999999999999988876 6888888888887764 558899999999999877666
Q ss_pred CHH
Q 003122 476 NIV 478 (846)
Q Consensus 476 ~~~ 478 (846)
+..
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 654
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.6e-18 Score=196.22 Aligned_cols=330 Identities=8% Similarity=-0.024 Sum_probs=262.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 003122 447 ALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVG 526 (846)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 526 (846)
.++..+.+.|++++|..+++..+... +-+......++.++...|+.+.|...++.+.... +.+...+..+...+.+.|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34555666677777777776666653 2223344444455556777777777777766653 346677888888999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 527 EYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN 606 (846)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (846)
++++|+..|+++.+.. +.+...+..++..+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 9999999999998863 3356678888999999999999999999887764 3344444444 34788999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHHHCC
Q 003122 607 MMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSK----VLLVAEFMREQD 682 (846)
Q Consensus 607 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~ 682 (846)
.++.....++...+..++..+...|++++|+..++++.+.. +.+...+..+...+...|++++ |+..|+++++..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 98875423345555666788899999999999999999842 3347788889999999999986 899999999987
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHH
Q 003122 683 ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYS 761 (846)
Q Consensus 683 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~ 761 (846)
+. +...+..++.++...|++++|+..++++....|. +..++..++.+|...|++++|++.|+++++ ..|+.. .+.
T Consensus 281 P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~ 356 (656)
T PRK15174 281 SD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNR 356 (656)
T ss_pred CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHH
Confidence 66 7788999999999999999999999999988888 678889999999999999999999999999 889654 455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 762 ILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 762 ~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
.++.+|...|++++|+..|+++.+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5677899999999999999999874
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=4.5e-17 Score=184.17 Aligned_cols=455 Identities=12% Similarity=0.080 Sum_probs=248.4
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 003122 275 YKNGAQYSKALSYFELMKGTNIRPDT--TTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQ 352 (846)
Q Consensus 275 ~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 352 (846)
..+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.....+ ........++..|...|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n---~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMN---ISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCC
Confidence 345666666666666666542 332 122 555555666666666666666652111 122223333445556666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 003122 353 IENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNM 432 (846)
Q Consensus 353 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 432 (846)
+++|+++|+++++.. +-+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 666666666666553 223344445555566666666666666666553 34444444444444344445446666666
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCH
Q 003122 433 MRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNT 512 (846)
Q Consensus 433 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 512 (846)
+.+.. +.+...+..+..++.+.|-...|.++..+-... +.+. ....| . .+.|........ .++.
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~--~~~~l-~-------~~~~a~~vr~a~----~~~~ 258 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE--HYRQL-E-------RDAAAEQVRMAV----LPTR 258 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH--HHHHH-H-------HHHHHHHHhhcc----cccc
Confidence 66553 334455555556666666666665554432211 0010 10000 0 000111100000 0000
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCH-HHH----HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 003122 513 VAYNSAIGSYMNVGEYEKAIALYKCMKKR-KVMPDS-VTY----TVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYS 586 (846)
Q Consensus 513 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 586 (846)
. ... +---.+.|+.-++.+... +..|.. ..| .-.+-++...|++.+++..++.+...+.+....+-.
T Consensus 259 ~----~~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 259 S----ETE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred c----chh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 0 000 001235566666665542 112321 112 223446677788888888888888776655566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CC
Q 003122 587 SVISAYSKQGLIAEAESMFNMMKMSG-----CSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNI-----------EP 650 (846)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-----------~p 650 (846)
+++++|...+++++|+.+|..+.... ..++......|..+|...+++++|..+++++.+..- .|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 78888888888888888888876632 122344456778888888888888888888876210 12
Q ss_pred C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHH
Q 003122 651 D---SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQ 727 (846)
Q Consensus 651 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 727 (846)
+ ......++..+...|+..+|++.++++....|. +......+++++...|...+|++.++.+....|. +..+...
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~ 489 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERA 489 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHH
Confidence 2 223334455566667777777777777665554 6666666666666777777777776666666555 5566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q 003122 728 LLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLK 765 (846)
Q Consensus 728 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 765 (846)
.+..+...|++++|..+.+++++ ..|+......|..
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r 525 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDR 525 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHH
Confidence 66666666777777666666666 6665554444433
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.86 E-value=2.3e-15 Score=161.05 Aligned_cols=641 Identities=12% Similarity=0.048 Sum_probs=382.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGS 242 (846)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 242 (846)
.-...+.+...|++++|.+++.++.+.. +.+...|..|...|-+.|+.+++...+-..-... +-|...|..+......
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 3344555666699999999999988754 5567889999999999999999988876655443 3366888888888889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChH----HHHHHHHHHHhcCCHHH
Q 003122 243 TGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTT----THNIVIYCLVKLGQYDK 318 (846)
Q Consensus 243 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~ 318 (846)
.|+++.|.-.|.+.++..+. +...+-.-...|-+.|+...|...|.++.....+.|.. .-..++..+...++.+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999887543 44444555677888999999999999988764322222 22334666777788889
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-----------------------
Q 003122 319 AIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSY----------------------- 375 (846)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----------------------- 375 (846)
|.+.++.......+ .-+...++.++..+.+...++.|...+..+......+|...|
T Consensus 299 a~~~le~~~s~~~~-~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 299 AAKALEGALSKEKD-EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHhhccc-cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 99999888873322 234556788888889999999998888887763333333222
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 003122 376 ---NALMAAYASHGMSKEALSVFNEIKKNGL--CPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALID 450 (846)
Q Consensus 376 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 450 (846)
..+.-++......+....+..-..+... .-+...|.-+..+|...|++.+|+++|..+.......+...|..+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 1122223333333333333333333332 22344566666666666666666666666665544445556666666
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCccCHHHHHHHHHHH
Q 003122 451 AYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMR--------DIKLNTVAYNSAIGSY 522 (846)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~ 522 (846)
.|...|.+++|.+.|++.+... +.+...-..|...+.+.|+.++|.+.+..+... +..|+........+.+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 6666666666666666666542 222334445555555666666666666553321 1222333333344445
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 523 MNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAE 602 (846)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 602 (846)
.+.|+.++-+.+-..|+... .....+ + .+..++...- ....+.+-.......++.+-.+.++.....
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~------~~~~~~--f---~~~~k~r~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDF------LKKRYI--F---PRNKKKRRRA--IAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHH------HHHHHh--c---chHHHHHHHh--hccccccccchhHHHHHHHHhccCchHHhh
Confidence 55555555444443333211 000000 0 0000000000 000001112222223333333333322222
Q ss_pred HHHH------HHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHH---H-HHHHHHHHHhcCChh
Q 003122 603 SMFN------MMKMSGCSPD--VITYTAMLHAYNTAEDWEKACALFLEMETNNIE-PDSI---A-CSALMRAFNKGGQPS 669 (846)
Q Consensus 603 ~~~~------~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~---~-~~~l~~~~~~~g~~~ 669 (846)
.-.. --...|+..+ ...+.-++..+++.+++++|+.+...+...... -+.. . -...+.+.+..+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 1111 1111222222 134456677889999999999999999874321 2222 1 223455677899999
Q ss_pred HHHHHHHHHHHC---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 003122 670 KVLLVAEFMREQ---DITFS-DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLF 745 (846)
Q Consensus 670 ~A~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 745 (846)
.|...++.|+.. ...|. ...|++........++-.--.+++..+....+..++......++-....+.+.-|.+.+
T Consensus 684 ~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y 763 (895)
T KOG2076|consen 684 DAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEY 763 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHH
Confidence 999999999864 11222 23344455566666665555666666665555544555556777888899999999999
Q ss_pred HHHHhcCCCcCHHHHH-HHHHHHHh--cCC--------HHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCcchHHH
Q 003122 746 FKIVSSGAEANFNTYS-ILLKNLLA--AGN--------WRKYIEVLQWMEDAGIQ-PSYGMFRDIVSFAQTRGGAEYAAI 813 (846)
Q Consensus 746 ~~~~~~g~~p~~~~~~-~l~~~~~~--~g~--------~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~ 813 (846)
-++.. ..||....+ .++-++.. .++ .-+.+.++++..+.... .....+.+++..+..-|-.+.|..
T Consensus 764 ~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~ 841 (895)
T KOG2076|consen 764 MRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVS 841 (895)
T ss_pred HHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99999 899855333 33333322 111 23456666666554222 134578899999999999999999
Q ss_pred HHHHHHHHhh
Q 003122 814 IQERIESLRM 823 (846)
Q Consensus 814 ~~~~l~~l~~ 823 (846)
+|+++.++.+
T Consensus 842 YYekvL~~~p 851 (895)
T KOG2076|consen 842 YYEKVLEVSP 851 (895)
T ss_pred HHHHHhCCCc
Confidence 9999998753
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=4.3e-16 Score=176.30 Aligned_cols=461 Identities=12% Similarity=0.062 Sum_probs=310.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 302 THNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDI-VTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMA 380 (846)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 380 (846)
+...-+-...+.|+++.|++.|+++.+..+. +. ..+ .++..+...|+.++|+..+++.... ..........+..
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~---~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ 110 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPL---QSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAAR 110 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCcc---chhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHH
Confidence 3333444456788888888888888776544 21 222 6777777778888888888887721 1122223333455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHH
Q 003122 381 AYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAE 460 (846)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 460 (846)
.|...|++++|+++|+++.+.... +...+..++..|...++.++|++.++++... .|+...+..++..+...++..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 777778888888888888775322 4555667777778888888888888877765 4555555444444444556656
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 003122 461 AVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKK 540 (846)
Q Consensus 461 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 540 (846)
|++.++++.+.. +.+...+..++.++.+.|-...|.++...-... .+...+.. + +.+.|.+..+-.
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~-l-------~~~~~a~~vr~a-- 253 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQ-L-------ERDAAAEQVRMA-- 253 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHH-H-------HHHHHHHHHhhc--
Confidence 888888888753 334555666666666666666666544432211 01111100 0 111122111111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003122 541 RKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL--KIPLTNQVY----SSVISAYSKQGLIAEAESMFNMMKMSGCS 614 (846)
Q Consensus 541 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (846)
..++..- -. +---.+.|+.-++.+... ..|+....| .=.+-++...|++.++++.|+.+...+.+
T Consensus 254 --~~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~ 324 (822)
T PRK14574 254 --VLPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK 324 (822)
T ss_pred --ccccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence 1110000 00 001235566666666652 123322222 22345678899999999999999987755
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------
Q 003122 615 PDVITYTAMLHAYNTAEDWEKACALFLEMETNN-----IEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDI------ 683 (846)
Q Consensus 615 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------ 683 (846)
....+-..++++|...++.++|..+|+++.... ..++......|..+|..++++++|..+++++.+..+
T Consensus 325 ~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 325 MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 455677899999999999999999999997632 122344467889999999999999999999998433
Q ss_pred -----CCCH---HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 684 -----TFSD---SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 684 -----~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
.|++ .....++..+...|++.+|++.++++....|. +..++..++.++...|...+|++.++.+.. +.|
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P 481 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVES--LAP 481 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCC
Confidence 2332 23455677889999999999999999999998 889999999999999999999999988888 899
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 003122 756 N-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDI 798 (846)
Q Consensus 756 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 798 (846)
+ ..+....+.++.+.|+|++|..+.+.+.+ ..|+......+
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l 523 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQEL 523 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHH
Confidence 5 55888899999999999999999999987 56776644443
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=2e-17 Score=161.95 Aligned_cols=503 Identities=13% Similarity=0.136 Sum_probs=322.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC--HHHHHHHH
Q 003122 268 HNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHN-IVIYCLVKLGQYDKAIDLFHSMREKRSECLPD--IVTFTSII 344 (846)
Q Consensus 268 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~li 344 (846)
...|.+-|.......+|+..|+-+.+...-|+.-... .+...+.+...+.+|+++++-.+..-|.+..+ +...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 3444556666777788888888887776666654432 34566778888889999888877655443333 23445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH--------HHHHHH
Q 003122 345 HLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSY--------TSLLNA 416 (846)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------~~ll~~ 416 (846)
-.+.+.|.++.|+..|+...+. .|+..+-..|+-++...|+-++..+.|.+|..-...||..-| ..|+.-
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5677888899999888888876 577776555666666778888888888888765434443221 111111
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHH
Q 003122 417 YGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVS-ICTLLAACGRCGRKVN 495 (846)
Q Consensus 417 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~ll~~~~~~g~~~~ 495 (846)
-.+. ..+..|.+.+ ..+-++++-.--+++.--+.|+-.. +.--+..+-..-..+.
T Consensus 362 ai~n-------d~lk~~ek~~-----------------ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~l 417 (840)
T KOG2003|consen 362 AIKN-------DHLKNMEKEN-----------------KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAEL 417 (840)
T ss_pred HHhh-------HHHHHHHHhh-----------------hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhh
Confidence 1111 1111221110 0111222222222222112222110 0000000000000000
Q ss_pred HHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cCCHhHHHHHHHHH
Q 003122 496 IDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCR--LSRYSEALGFLDEM 573 (846)
Q Consensus 496 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~~ 573 (846)
|. ..-..-...|.++|+++.|+++++-+.+..-+.-...-+.|-..+.- -.++-.|.++-+.+
T Consensus 418 a~---------------dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 418 AI---------------DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred hh---------------hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 00 00011234577899999999998888765433222222222222222 34677777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 574 MDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI 653 (846)
Q Consensus 574 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 653 (846)
+... .-+......-.+.-...|++++|.+.|++.+..+- .-......+.-.+...|+.++|+..|-++..- +..+..
T Consensus 483 ln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~e 559 (840)
T KOG2003|consen 483 LNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAE 559 (840)
T ss_pred hccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHH
Confidence 6543 34444444444555568999999999999987421 11333444455577889999999999998762 334567
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
....+...|....+...|++++.++...-+. ++.++..+++.|.+.|+..+|.+.+=.-..-.|. ++.+...|+.-|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~slip~-dp~ilskl~dlydqegdksqafq~~ydsyryfp~-nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSLIPN-DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC-NIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcccCCC-CHHHHHHHHHHhhcccchhhhhhhhhhcccccCc-chHHHHHHHHHHH
Confidence 7888899999999999999999999886444 8899999999999999999999987766666666 7777788888999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEANFNTYSILLKN-LLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAA 812 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 812 (846)
...-+++|+.+|+++.- +.|+..-|-.++.. +.+.|+|++|+++|+...++ +..|..+.+-+...+-..| ..+++
T Consensus 638 dtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg-l~d~k 713 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG-LKDAK 713 (840)
T ss_pred hhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc-chhHH
Confidence 99999999999999998 99999988877655 77899999999999999875 6667777777766554444 34455
Q ss_pred HHHHHHHH
Q 003122 813 IIQERIES 820 (846)
Q Consensus 813 ~~~~~l~~ 820 (846)
++..++++
T Consensus 714 ey~~klek 721 (840)
T KOG2003|consen 714 EYADKLEK 721 (840)
T ss_pred HHHHHHHH
Confidence 55544433
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=3.8e-14 Score=138.53 Aligned_cols=299 Identities=16% Similarity=0.209 Sum_probs=204.5
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHH--HH-HHHHHHHhhCC-------------------C
Q 003122 134 ITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQID--KA-RGLFFEMQKWR-------------------C 191 (846)
Q Consensus 134 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A-~~~~~~~~~~~-------------------~ 191 (846)
+...|....+.-+|+.|+.. +.+.++.+--.|.+..+-.++-+ -| .+-|-.|..+| .
T Consensus 125 mIS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~ 203 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETL 203 (625)
T ss_pred HHhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhc
Confidence 34557888888999988854 45677776666655544322211 11 11222222221 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 003122 192 KPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIV 271 (846)
Q Consensus 192 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 271 (846)
+.+..++..||.++|+-...+.|.++|++......+.+..+||.+|.+-.- ....+++.+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 456788889999999988889999999888877778888889988876532 2337788888888888999999999
Q ss_pred HHHHHcCCCHH----HHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHHHHhc--C----CCCCCCHHHH
Q 003122 272 LSAYKNGAQYS----KALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDK-AIDLFHSMREK--R----SECLPDIVTF 340 (846)
Q Consensus 272 l~~~~~~g~~~----~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~--~----~~~~~~~~~~ 340 (846)
+++..+.|+|+ .|.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... | +..+.|...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 99988888876 456778888888999999999999888888877644 44444444331 1 1111245556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 003122 341 TSIIHLYSVNGQIENCKGVFNTMLAEG----LKPNI---VSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSL 413 (846)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 413 (846)
..-+..+....+.+-|.++..-+.... +.|+. .-|..+....|.....+.-...|+.|.-+-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 666677777777777777655543321 22332 23556666777777777777788877766666777777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC
Q 003122 414 LNAYGRSQQPVKAREVFNMMRINN 437 (846)
Q Consensus 414 l~~~~~~g~~~~A~~~~~~m~~~~ 437 (846)
+++..-.|.++-.-+++..++.-|
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhh
Confidence 777777777777777777777654
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=4.9e-13 Score=132.59 Aligned_cols=497 Identities=10% Similarity=0.043 Sum_probs=342.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 003122 302 THNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV-SYNALMA 380 (846)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~ 380 (846)
.|-....--...+++..|..+|++++..+.. +...|...+.+-.++..+..|..++++.+.. -|-+. .|-..+.
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r---~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYR---NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 3433444444566777788888887765543 6677777777777888888888888887765 33332 4555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHH
Q 003122 381 AYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAE 460 (846)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 460 (846)
+--..|++..|.++|++..+ ..|+...|.+.|+.=.+.+.++.|..+++..+-. .|++.+|--....-.+.|+..-
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 55667888888888888776 4688888888888888888888888888877654 5788888777777777888888
Q ss_pred HHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccC--HHHHHHHHHHHHhcCCH---HHH
Q 003122 461 AVEVFREMEQDGIEPNIV----SICTLLAACGRCGRKVNIDAVLLAAEMRDIKLN--TVAYNSAIGSYMNVGEY---EKA 531 (846)
Q Consensus 461 A~~~~~~~~~~g~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~---~~A 531 (846)
|..+|..+++. ..|.. .+.++...=.++..++.|..++..++..= +.+ ...|......--+-|+. +++
T Consensus 226 aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 226 ARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 88888877764 12222 33333333345667778888887777652 222 33444444444445553 333
Q ss_pred HH-----HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---HhcC
Q 003122 532 IA-----LYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQ-------VYSSVISAY---SKQG 596 (846)
Q Consensus 532 ~~-----~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~---~~~g 596 (846)
+. -|+.+++.+ +-|-.+|--.+..-...|+.+...++|+.++.. +||-.. +|.-+--++ ....
T Consensus 303 Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 32 244555543 457777877888778889999999999999875 455322 111111111 2578
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHA----YNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVL 672 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 672 (846)
+.+.+.++|+..++. ++...+|+.-+--+ ..++.++..|.+++..++. .-|...++...+..=.+.+++|...
T Consensus 381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHH
Confidence 899999999999883 33335555444433 4578899999999999885 6788889999999989999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003122 673 LVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV-VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS 751 (846)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 751 (846)
.+|++.++.+|. +..+|...+..-...|+++.|..+|+-+.+.... .....|.+.+..-...|.++.|..+|+++++
T Consensus 458 kLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~- 535 (677)
T KOG1915|consen 458 KLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD- 535 (677)
T ss_pred HHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH-
Confidence 999999998876 7788888888888999999999999988755432 2245678888888899999999999999999
Q ss_pred CCCcCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHHCCCCCCHH-----hHHHHHHHHHhcCCcch
Q 003122 752 GAEANFNTYSILLKNLL-----AAG-----------NWRKYIEVLQWMEDAGIQPSYG-----MFRDIVSFAQTRGGAEY 810 (846)
Q Consensus 752 g~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~g~~p~~~-----~~~~l~~~~~~~~~~~~ 810 (846)
..+...+|..++..-. +.| +...|..+|+++...--..++. .......+-...|....
T Consensus 536 -rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d 614 (677)
T KOG1915|consen 536 -RTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGD 614 (677)
T ss_pred -hcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhh
Confidence 7788888888877533 445 5667888888875431111111 23333444445555544
Q ss_pred HHHHHHHH
Q 003122 811 AAIIQERI 818 (846)
Q Consensus 811 a~~~~~~l 818 (846)
-..+..++
T Consensus 615 ~~~V~s~m 622 (677)
T KOG1915|consen 615 VERVQSKM 622 (677)
T ss_pred HHHHHHhc
Confidence 44444433
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.2e-15 Score=149.59 Aligned_cols=175 Identities=14% Similarity=0.135 Sum_probs=113.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 521 SYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAE 600 (846)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 600 (846)
.+-..|++++|+..|-++... ...+......+...|....+..+|++++-++... +|.|+.+.+-|.+.|-+.|+-..
T Consensus 533 t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhh
Confidence 344566777777776665432 1234555566666677777777777777776654 56677777777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHH
Q 003122 601 AESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRA-FNKGGQPSKVLLVAEFMR 679 (846)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~ 679 (846)
|.+.+-.-.+. ++-|..+..-|..-|....-+++|+.+|++..- +.|+..-|..++.. +.+.|++.+|+++|+...
T Consensus 611 afq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 611 AFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 77665443332 344566666667777777777777777777655 67777777665543 446777777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC
Q 003122 680 EQDITFSDSIFFEMVLACSLLR 701 (846)
Q Consensus 680 ~~~~~~~~~~~~~l~~~~~~~g 701 (846)
..-+. +...+..++.++...|
T Consensus 688 rkfpe-dldclkflvri~~dlg 708 (840)
T KOG2003|consen 688 RKFPE-DLDCLKFLVRIAGDLG 708 (840)
T ss_pred HhCcc-chHHHHHHHHHhcccc
Confidence 65443 5666666666666555
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.6e-14 Score=146.80 Aligned_cols=507 Identities=12% Similarity=0.075 Sum_probs=328.1
Q ss_pred ChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 003122 264 DLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSI 343 (846)
Q Consensus 264 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 343 (846)
+..-+..+++-+..+.++..|.-+-+++...+. |...--.++.++.-.|+++.|..++..-.-.. .|..+....
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~----~d~~cryL~ 88 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLEK----RDIACRYLA 88 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh----hhHHHHHHH
Confidence 455566677777777888888888888876653 44444557778888888888888776543211 367777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh
Q 003122 344 IHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQP 423 (846)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 423 (846)
...+.+..++++|..++..... .-+...|-.--. ...-..+.+. ++.. +......+-.-...|....+.
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~ 157 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNR 157 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccH
Confidence 8888888888888887763310 111111100000 0000000111 0000 000011111112234455566
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 424 VKAREVFNMMRINNLKPNLVSYSALIDAYGSN-GLLAEAVEVFREMEQD-GIEPNIVSICTLLAACGRCGRKVNIDAVLL 501 (846)
Q Consensus 424 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 501 (846)
++|...|.+.... |...+..+...-... =-.++-.++|+.+--. -..-+......+.....-...-+.....-.
T Consensus 158 ~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~ 233 (611)
T KOG1173|consen 158 EEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNE 233 (611)
T ss_pred HHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCc
Confidence 6777766666543 343333322111110 0011222222210000 001112222222221100000000000000
Q ss_pred HHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 003122 502 AAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLT 581 (846)
Q Consensus 502 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 581 (846)
+....+...+........+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-.++++. .|..
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~ 311 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSK 311 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCC
Confidence 01112234466677777888889999999999999998875 556666777777888999988888888888886 4778
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 582 NQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMR 660 (846)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 660 (846)
..+|-+++--|.-.|+..+|.+.|.+.... .|. ...|-..++.|.-.|.-++|+..+..+-+. ++-....+..++-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGM 388 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHH
Confidence 899999999999999999999999998874 344 678999999999999999999999988773 1212223444555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccC----CCcc--chhhHHHHHHHHHh
Q 003122 661 AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPS----FHVV--SIGLLNQLLHLLGK 734 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~ 734 (846)
-|.+.++.+-|..+|.++....|. |+.....++-+....+.+.+|..+|+..... .+.. -..++++||++|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 688899999999999999987665 7888889999999999999999999876521 1111 23458999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 003122 735 SGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSF 801 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 801 (846)
.+++++|+..|++++. +.| |..+|..++-+|.-.|+.+.|++.|.+++. +.|+..+...++..
T Consensus 468 l~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 9999999999999999 899 677999999999999999999999999985 88988765555443
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=8.2e-14 Score=136.28 Aligned_cols=431 Identities=17% Similarity=0.196 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHH-HHHHHHHHHCCCCCChHHHHHHH
Q 003122 196 ETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTG--NWREA-LKVCKKMTENGVGPDLVTHNIVL 272 (846)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g--~~~~A-~~~~~~~~~~g~~~~~~~~~~ll 272 (846)
++=|.|+.. ..+|.+.++.-+|+.|...|...+...-..|++.-+-.+ ++--| ++.|-.|...|-. ...+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc----
Confidence 344444443 345667777777777777777766666666655433222 22111 2233333333221 11222
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 003122 273 SAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQ 352 (846)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 352 (846)
+.|...+ -+|+.. +.+..++.+||.++|+--..+.|.+++++....... .+..+||.+|.+-.-.
T Consensus 191 ----K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k--v~~~aFN~lI~~~S~~-- 255 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK--VYREAFNGLIGASSYS-- 255 (625)
T ss_pred ----ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe--eeHHhhhhhhhHHHhh--
Confidence 2233222 222222 224456666666666666666666666665543322 4555666655543221
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHH-HH
Q 003122 353 IENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEA----LSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVK-AR 427 (846)
Q Consensus 353 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-A~ 427 (846)
...++..+|....+.||..|+|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |.
T Consensus 256 --~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 256 --VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred --ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 1245555665555566666666666666666655432 3444555555555555555555555555544432 22
Q ss_pred HHHHHHHH----CCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 428 EVFNMMRI----NNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAA 503 (846)
Q Consensus 428 ~~~~~m~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 503 (846)
.++.++.. +.++|- -+.|...|...+..|.+..+.+-|..+....
T Consensus 334 ~~i~dI~N~ltGK~fkp~-------------------------------~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll 382 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPI-------------------------------TPTDNKFFQSAMSICSSLRDLELAYQVHGLL 382 (625)
T ss_pred HHHHHHHHhhccCcccCC-------------------------------CCchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22222211 111110 0112233344444444444444444444333
Q ss_pred HhCC----CccC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003122 504 EMRD----IKLN---TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL 576 (846)
Q Consensus 504 ~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 576 (846)
.... +.++ ..-|..+....|+....+.-+..|+.|.-.-+.|+..+...++++....+.++-.-+++.+++..
T Consensus 383 ~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 383 KTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 2211 1111 12344555666666677777777777776666666666666777666666666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHhcC--------------------CHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 577 KIPLTNQVYSSVISAYSKQG--------------------LIAEA-ESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEK 635 (846)
Q Consensus 577 ~~~~~~~~~~~l~~~~~~~g--------------------~~~~A-~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 635 (846)
|.........-+...+++.+ ++.++ ...-..+.+.. -.....+.++-.+.+.|..++
T Consensus 463 ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qk 540 (625)
T KOG4422|consen 463 GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQK 540 (625)
T ss_pred hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHH
Confidence 43222222222222222221 01111 11111222222 223344555555666666666
Q ss_pred HHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003122 636 ACALFLEMETNN----IEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQD 682 (846)
Q Consensus 636 A~~~~~~~~~~g----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (846)
|.+++.-+...+ ..|...+..-+++.-...+++..|+..++-|...+
T Consensus 541 A~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 541 AWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 666666664432 12223333345555555566666666666665543
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=4e-16 Score=161.84 Aligned_cols=281 Identities=14% Similarity=0.101 Sum_probs=227.8
Q ss_pred CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHH
Q 003122 492 RKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKV--MPDSVTYTVLISSCCRLSRYSEALGF 569 (846)
Q Consensus 492 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~ 569 (846)
+..+|...|...... +.....+...+..+|...+++++|.++|+.+.+... .-+..+|.+.+..+ +-+-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL----q~~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL----QDEVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH----HhhHHHHH
Confidence 345666666663322 233445666778889999999999999998887521 12556777776554 22333444
Q ss_pred HH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003122 570 LD-EMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSP-DVITYTAMLHAYNTAEDWEKACALFLEMETNN 647 (846)
Q Consensus 570 ~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 647 (846)
+. ++++. .+..+.+|.+++++|.-+++.+.|++.|++.++. .| ...+|+.+++-+.....+|+|...|+.++.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 43 33443 3678899999999999999999999999999985 56 478999999999999999999999999987
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHH
Q 003122 648 IEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLN 726 (846)
Q Consensus 648 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 726 (846)
+.|. -.+|..|+-.|.++++++.|.-.|+++++.+|. +.....+++..+.+.|+.++|+++++++...+|. ++..-.
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 5555 448888999999999999999999999998877 7888889999999999999999999999888888 666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
..+..+...+++++|...++++.+ +.|+ ..+|..++..|.+.|+.+.|+.-|..|.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 888899999999999999999999 9995 568889999999999999999999999874
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.7e-14 Score=142.16 Aligned_cols=234 Identities=15% Similarity=0.102 Sum_probs=149.0
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 559 RLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACA 638 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (846)
-.|+.-.|..-|+.+++.. +.+...|.-+..+|....+.++-...|++....+ +-|+.+|..-+.++.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3456666666666666653 2222335555666666667777777777666643 2245566666666666667777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 003122 639 LFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSF 717 (846)
Q Consensus 639 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 717 (846)
-|++.+. +.|+ ...|..+..+..+++++++++..|+...+.-|. .++.|+..+.++..++++++|++.|+.+....
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 7777766 4443 445666666666777777777777777765444 56667777777777777777777777665444
Q ss_pred Ccc-----c--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 718 HVV-----S--IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 718 ~~~-----~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
|.. + +.+.-.++-.- ..+++..|.+++.++++ ++|. ..+|..|+..-.+.|+.++|+++|++... +.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~--lA 567 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ--LA 567 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HH
Confidence 441 1 11222222222 34899999999999999 8884 45888899999999999999999988765 33
Q ss_pred CCHHhHHHHHHHH
Q 003122 790 PSYGMFRDIVSFA 802 (846)
Q Consensus 790 p~~~~~~~l~~~~ 802 (846)
.......+..++.
T Consensus 568 rt~~E~~~a~s~a 580 (606)
T KOG0547|consen 568 RTESEMVHAYSLA 580 (606)
T ss_pred HhHHHHHHHHHHH
Confidence 3333344444443
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.7e-14 Score=141.20 Aligned_cols=412 Identities=14% Similarity=0.083 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 003122 301 TTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPD-IVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV-SYNAL 378 (846)
Q Consensus 301 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 378 (846)
..+.....-|.+.|.+++|++.+.+.++.. || .+.|.....+|...|++++..+...+.++. .|+-+ .+..-
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~----p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RR 189 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELC----PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRR 189 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcC----CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHH
Confidence 345666777788888999999999888754 44 778888888888899999888888888775 56543 56666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH--------HH-CC--CCcCHHHHHH
Q 003122 379 MAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMM--------RI-NN--LKPNLVSYSA 447 (846)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m--------~~-~~--~~~~~~~~~~ 447 (846)
..++-..|++++|+.= .|..++..++....-..-+.+++.+. .+ ++ +-|......+
T Consensus 190 A~A~E~lg~~~eal~D-------------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~s 256 (606)
T KOG0547|consen 190 ASAHEQLGKFDEALFD-------------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIAS 256 (606)
T ss_pred HHHHHhhccHHHHHHh-------------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 6777777777776532 22233333333333333333333221 11 11 1233322222
Q ss_pred HHHHHHhC------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCccC-------
Q 003122 448 LIDAYGSN------GLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMR---DIKLN------- 511 (846)
Q Consensus 448 li~~~~~~------g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~------- 511 (846)
....+... ...+++-..+....+.-..-... .+..|...+.+-... ....+
T Consensus 257 yf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e-------------~Y~~a~~~~te~~~~~~~~~~~n~~d~~le 323 (606)
T KOG0547|consen 257 YFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEE-------------GYLKAYDKATEECLGSESSLSVNEIDAELE 323 (606)
T ss_pred HHhhccccccccccCCCccchhhHHHHHHHHHhhCch-------------hHHHHHHHHHHHhhhhhhhccccccchhHH
Confidence 22222110 00011111111111100000011 122222222211110 00111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003122 512 --TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVI 589 (846)
Q Consensus 512 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 589 (846)
..+...-...+.-.|+.-.|...|+..++....++. .|..+...|....+.++....|+++.+.+ +.+..+|..-+
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRg 401 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRG 401 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHH
Confidence 222333333455678888999999998887544333 26677778888999999999999998876 66778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003122 590 SAYSKQGLIAEAESMFNMMKMSGCSP-DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQP 668 (846)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 668 (846)
+++.-.+++++|..-|++.... .| ++..|-.+..+..+.+++++++..|++.+.. ++.-+..|+.....+..++++
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhH
Confidence 8888888999999999999885 34 3677777777777888999999999999874 444477888888999999999
Q ss_pred hHHHHHHHHHHHCCCC-----CCHHHHHH-HHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH
Q 003122 669 SKVLLVAEFMREQDIT-----FSDSIFFE-MVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM 742 (846)
Q Consensus 669 ~~A~~~~~~~~~~~~~-----~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 742 (846)
+.|.+.|+.+++..+. .+...+.. .+..+.-.+++.+|+.++.++.+.+|. .-.++.+|+......|++++|+
T Consensus 479 d~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 479 DKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999875433 12222221 112233447889999999999988888 5578889999999999999999
Q ss_pred HHHHHHHh
Q 003122 743 KLFFKIVS 750 (846)
Q Consensus 743 ~~~~~~~~ 750 (846)
++|++...
T Consensus 558 elFEksa~ 565 (606)
T KOG0547|consen 558 ELFEKSAQ 565 (606)
T ss_pred HHHHHHHH
Confidence 99999876
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.8e-15 Score=155.70 Aligned_cols=285 Identities=12% Similarity=0.090 Sum_probs=235.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 527 EYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLK--IPLTNQVYSSVISAYSKQGLIAEAESM 604 (846)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 604 (846)
+.++|+..|..+... +.........+..+|...+++++|.++|+.+.+.. .-.+..+|.+.+.-+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 568899999985544 33344566778899999999999999999998753 12356677776654322 222332
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003122 605 F-NMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQD 682 (846)
Q Consensus 605 ~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (846)
+ +.+.... +-.+.+|.+++++|.-+++.+.|++.|+++++ +.| ...+|..++.-+.....+|.|...|+.++..+
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 2 3344431 33489999999999999999999999999998 677 57899999998999999999999999999866
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHH
Q 003122 683 ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYS 761 (846)
Q Consensus 683 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~ 761 (846)
+. .-.+|+.++-+|.++++++.|+-.|+++.+.+|. +..+...++..+.+.|+.|+|++++++++. ++| |+..-+
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~ 561 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKY 561 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHH
Confidence 55 5677889999999999999999999999999999 667777899999999999999999999999 999 788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCcchHHHHHHHHHHHhhcc
Q 003122 762 ILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG-MFRDIVSFAQTRGGAEYAAIIQERIESLRMKS 825 (846)
Q Consensus 762 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~ 825 (846)
..+..+...|++++|+..++++.+ +.|+.. .+..++..+.+.|..+.|..-+..+..|.++-
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 999999999999999999999988 667654 66777899999999999998888777766553
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.7e-13 Score=136.96 Aligned_cols=285 Identities=12% Similarity=0.058 Sum_probs=225.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 003122 473 IEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTV 552 (846)
Q Consensus 473 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 552 (846)
...+........+-|...+++.+..++.+.+.+.+ +++...+..-|..+...|+..+-..+=.++.+.- +-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 34455566666677777888888888888887764 5566666666778888888888777777787763 446778999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003122 553 LISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAED 632 (846)
Q Consensus 553 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 632 (846)
+..-|...|++.+|..+|.+....+ +.-...|..++..|+-.|..++|...|..+.+. ++-...-+--++.-|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 9999999999999999999987754 344568999999999999999999999888773 11122223345566888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhcCCHHHH
Q 003122 633 WEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ----DIT--FSDSIFFEMVLACSLLRDWKTT 706 (846)
Q Consensus 633 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A 706 (846)
.+-|.+.|.++... .+.|+...+-++-...+.+.+.+|..+|+..+.. +.+ .-..+++.++.+|.+.+++++|
T Consensus 396 ~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999999873 2446778888888888889999999999988841 111 1345688999999999999999
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q 003122 707 IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLK 765 (846)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 765 (846)
+..+++.....|. ++.++.+++..|...|+++.|+..|.+++- +.||...-..++.
T Consensus 475 I~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 475 IDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 9999999988888 889999999999999999999999999999 9998765544444
No 42
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.70 E-value=2.8e-10 Score=117.60 Aligned_cols=491 Identities=13% Similarity=0.115 Sum_probs=287.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003122 302 THNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAA 381 (846)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 381 (846)
.|...+..+.+.|++......|++.+..-+- ......|...+......|-++-+..++++.++. ++..-+-.+..
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPV-TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCch-HhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 4444445555555555555555555442211 112234555555555555555666666665543 22234445555
Q ss_pred HHhcCCHHHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCcCH--HHHHHHHH
Q 003122 382 YASHGMSKEALSVFNEIKKNG------LCPDIVSYTSLLNAYGRSQQPV---KAREVFNMMRINNLKPNL--VSYSALID 450 (846)
Q Consensus 382 ~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~---~A~~~~~~m~~~~~~~~~--~~~~~li~ 450 (846)
+++.+++++|.+.+...+... -+.+...|.-+.+...+.-+.- ....++..+... -+|. ..|++|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 556666666666555554321 1123333444444433332221 122333333332 2333 35777788
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHH
Q 003122 451 AYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEK 530 (846)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 530 (846)
-|.+.|.+++|.++|++.++. .....-|..+.++|..-....-+..+- .....+.... ..-+++-
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~ 321 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLEL 321 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHH
Confidence 888888888888888877764 344445566666665433322222211 0101110100 0111222
Q ss_pred HHHHHHHHhhCC-----------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHH
Q 003122 531 AIALYKCMKKRK-----------VMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPL------TNQVYSSVISAYS 593 (846)
Q Consensus 531 A~~~~~~~~~~~-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~ 593 (846)
.+..|+.+.+.. -+-+...|..-+.. ..|+..+-+..+.++++. +.| -...|..+...|.
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHH
Confidence 333333333321 12234444444332 356777778888887764 222 2346888889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CC-------CHH
Q 003122 594 KQGLIAEAESMFNMMKMSGCSPD---VITYTAMLHAYNTAEDWEKACALFLEMETNNI----------EP-------DSI 653 (846)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----------~p-------~~~ 653 (846)
..|+++.|..+|++..+..++-- ..+|..-..+-.++.+++.|+++.+++....- .| ...
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 99999999999999887533211 35666677777788889999998888764211 11 133
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccc-hhhHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS-IGLLNQLLHLL 732 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 732 (846)
.|..+++.--..|-++....+|+++++..+. .+......+..+....-++++.++|++-....+.+. ..+|+..+..+
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 5667777777789999999999999997765 666666677777788889999999999877665443 67888887776
Q ss_pred Hhc--C-CHHHHHHHHHHHHhcCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhc
Q 003122 733 GKS--G-RIESMMKLFFKIVSSGAEANFN--TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG--MFRDIVSFAQTR 805 (846)
Q Consensus 733 ~~~--g-~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~ 805 (846)
.+. | +++.|+.+|+++++ |..|... .|...+..=.+.|.-..|+.+|+++-.. +++... +|+..+.-.+..
T Consensus 558 i~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~ 635 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEI 635 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHH
Confidence 552 3 99999999999999 5666544 3333333345569999999999997653 555433 466656555554
Q ss_pred CCcchHHHHHHHHHH
Q 003122 806 GGAEYAAIIQERIES 820 (846)
Q Consensus 806 ~~~~~a~~~~~~l~~ 820 (846)
-..+...+||++.-+
T Consensus 636 yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 636 YGVPRTREIYEKAIE 650 (835)
T ss_pred hCCcccHHHHHHHHH
Confidence 455666666665444
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3e-11 Score=120.19 Aligned_cols=431 Identities=12% Similarity=0.096 Sum_probs=223.3
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 171 ARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREAL 250 (846)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 250 (846)
-.++.+..|+.+|+.+.... ..+...|...+.+=.++..+..|..+++..+..=+..| ..|--.+.+=-..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHH
Confidence 34455566666666665532 34455555566666666666666666666555321111 12333333333456666666
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003122 251 KVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKR 330 (846)
Q Consensus 251 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 330 (846)
++|++..+ ..|+...|++.|+.=.+....+.|..+|+...-. .|++.+|-..+..--+.|+...|..+|+.+.+.-
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 66666655 3466666666666666666666666666666543 4666666666666666666666666666665432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHHH
Q 003122 331 SECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPN--IVSYNALMAAYASHGMSKEALSV--------FNEIKK 400 (846)
Q Consensus 331 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~ 400 (846)
.+-.-+...+.+....-..+..++.|.-+|+-.++. ++.+ ...|......--+-|+.....+. ++.+.+
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 110112334455555555566777777777777765 2222 22444444443444554433332 233333
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH--HHHHHHHHH--------HHhCCCHHHHHHHHHHHHH
Q 003122 401 NGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNL--VSYSALIDA--------YGSNGLLAEAVEVFREMEQ 470 (846)
Q Consensus 401 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~--------~~~~g~~~~A~~~~~~~~~ 470 (846)
.+ +.|-.+|--.++.-...|+.+...++|++.+.+ ++|-. ..|...|-. -....+.+.+.++|+..++
T Consensus 317 ~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 317 KN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred hC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 32 335566666666666778888888888887765 34421 122222211 1235667777777777776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 003122 471 DGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTY 550 (846)
Q Consensus 471 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 550 (846)
. ++....|+..+--.|+ ..-.++.++..|.+++...+.. -|-..+|
T Consensus 395 l-IPHkkFtFaKiWlmyA-------------------------------~feIRq~~l~~ARkiLG~AIG~--cPK~KlF 440 (677)
T KOG1915|consen 395 L-IPHKKFTFAKIWLMYA-------------------------------QFEIRQLNLTGARKILGNAIGK--CPKDKLF 440 (677)
T ss_pred h-cCcccchHHHHHHHHH-------------------------------HHHHHHcccHHHHHHHHHHhcc--CCchhHH
Confidence 3 4555555554443332 2223344444444444444322 3444444
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh
Q 003122 551 TVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSG-CSPDVITYTAMLHAYNT 629 (846)
Q Consensus 551 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~ 629 (846)
...|..=.+.+.++....++++.++.+ |.+..+|...+..-...|+.+.|..+|+.++... ..-....|.+.|+.-..
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~ 519 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh
Confidence 444444444455555555555555443 3444444444444444555555555555544421 00012334444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 003122 630 AEDWEKACALFLEMET 645 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~ 645 (846)
.|.+++|..+|+++++
T Consensus 520 ~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 520 EGEFEKARALYERLLD 535 (677)
T ss_pred cchHHHHHHHHHHHHH
Confidence 5555555555555554
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.2e-12 Score=129.79 Aligned_cols=365 Identities=11% Similarity=0.018 Sum_probs=243.2
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HH
Q 003122 403 LCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIV--SI 480 (846)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~ 480 (846)
...|...+-...-.+.+.|....|+..|......- +-.-..|..|.... -+.+. ...... |.+.|.. .-
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHh-cCcccchHHHH
Confidence 34455555555556667788888888887776531 33444444443332 22222 222222 2222221 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHH
Q 003122 481 CTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKV--MPDSVTYTVLISSCC 558 (846)
Q Consensus 481 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~ 558 (846)
--+..++....+.+++..-.......|++.+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++-.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv-- 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV-- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--
Confidence 223445556667777777777777777776666666666666777888888888888887631 1255667666533
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 003122 559 RLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKAC 637 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 637 (846)
+..+ ..+.++.+-.-.-.+--+.|...+++-|+-.++.++|...|+..++. .|. ...|+.+++-|...++...|+
T Consensus 309 ~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 KNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred Hhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHH
Confidence 2221 22222322221111334457777888888888888999999888885 344 678888888888888888899
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 003122 638 ALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSF 717 (846)
Q Consensus 638 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 717 (846)
.-++++++- .+-|-.+|.+|+.+|.-.+...=|+-+|+++.+..|. |...|..++.+|.+.++.++|+..++++...+
T Consensus 385 ~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 999888883 2346778888888888888888888888888887655 77888888888888889999998888887655
Q ss_pred CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 718 HVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS----G-AEANFN-TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 718 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.. ...++..|+..|.+.++.++|..+|++.++. | ..|+.. +-.-|+..+.+.+++++|..+......
T Consensus 463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 54 5567888888888888999998888888762 2 223222 333466668888888888777666543
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=1.9e-16 Score=161.78 Aligned_cols=261 Identities=17% Similarity=0.156 Sum_probs=105.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 517 SAIGSYMNVGEYEKAIALYKCMKKRKVMPDS-VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQ 595 (846)
Q Consensus 517 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 595 (846)
.+...+.+.|++++|+++++.......+|+. .-|..+.......+++++|...++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 4566777888888888888655444322333 334445556667788888888888888764 3355566666666 688
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003122 596 GLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNN-IEPDSIACSALMRAFNKGGQPSKVLLV 674 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 674 (846)
+++++|.++++...+. .++...+..++..+.+.++++++..+++++.... .+.+...|..++..+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888877654 3566677778888888889999888888877532 345667788888888889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003122 675 AEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAE 754 (846)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 754 (846)
++++++..|. +......++..+...|+.+++.++++......|. ++..|..++.+|...|+.++|...|+++.+ ..
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~-~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~ 244 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPD-DPDLWDALAAAYLQLGRYEEALEYLEKALK--LN 244 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT-SCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HS
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC-HHHHHHHHHHHhcccccccccccccccccc--cc
Confidence 9999887665 6777788888888888888888888777655544 556778888888888999999999999888 78
Q ss_pred c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 755 A-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 755 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
| |+.+...++.++...|+.++|..+++++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 8 566788888888889999999888887754
No 46
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.68 E-value=4.3e-10 Score=116.33 Aligned_cols=348 Identities=10% Similarity=0.100 Sum_probs=214.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC---
Q 003122 371 NIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPD------IVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPN--- 441 (846)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~--- 441 (846)
++..|..-+..+ .|+..+-...+.+..+. +.|- ...|..+...|-..|+++.|..+|++..+...+.-
T Consensus 348 nV~eW~kRV~l~--e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 348 NVEEWHKRVKLY--EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred cHHHHHhhhhhh--cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 333444444333 46667777777776653 2222 24577778888888888888888888776543222
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003122 442 LVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGS 521 (846)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 521 (846)
..+|......-.+..+++.|+++++.+... |.... ..+...+....+. + ..+...|...++.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ~r-l---------hrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQAR-L---------HRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHHHH-H---------HHhHHHHHHHHHH
Confidence 345666666677777888888877777652 22211 1112222211110 0 1145567778888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCC
Q 003122 522 YMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTN-QVYSSVISAYSK---QGL 597 (846)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~ 597 (846)
--..|-++....+|+.+++..+. +..........+-...-++++.+.|++-+..-..|++ ..|+..+.-+.+ ...
T Consensus 487 eEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 88888999999999999886543 2222222222344556688888888887765333443 456665555443 346
Q ss_pred HHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHH
Q 003122 598 IAEAESMFNMMKMSGCSPDVIT--YTAMLHAYNTAEDWEKACALFLEMETNNIEPD--SIACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~ 673 (846)
++.|..+|++.++ ||+|...- |-.....--+.|-...|+.+++++... +++. ...|+..+.--...=-+....+
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~ 643 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTRE 643 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence 8999999999998 67766332 222222234568888999999997653 4443 3356666553333223455678
Q ss_pred HHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHhhc-cCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 003122 674 VAEFMREQDITFSDSI---FFEMVLACSLLRDWKTTIDLIKQME-PSFHVVSIGLLNQLLHLLGKSGRIESMMKL 744 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 744 (846)
+|+++++.= |+... ....++.-+..|..+.|..++.-.. -.+|..+...|.+--..-.++|+-+.-.++
T Consensus 644 iYekaIe~L--p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 644 IYEKAIESL--PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHhC--ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 888888742 23322 2334455678899999998887654 346777888898888888899984444333
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.3e-12 Score=127.84 Aligned_cols=256 Identities=14% Similarity=0.088 Sum_probs=136.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCH
Q 003122 416 AYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGI--EPNIVSICTLLAACGRCGRK 493 (846)
Q Consensus 416 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~ 493 (846)
+|-...+.+++..-.+.....|++-+...-+....+.....++++|+.+|+++.+... -.|..+|+.++-.-..+..+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3333344455555555555555443333333333344445556666666666555420 01233443333221111111
Q ss_pred HH-HHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003122 494 VN-IDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDE 572 (846)
Q Consensus 494 ~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 572 (846)
.- |..++ .+. +.-+.++-.+.+.|.-.++.++|+..|+..++.+ +.....|+.+..-|....+...|++.++.
T Consensus 316 s~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 316 SYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 00 00000 000 1123344445555666666666666666666653 22344566666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 573 MMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS 652 (846)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 652 (846)
+++.+ |.|-..|..|+++|.-.+...-|+-.|+++.... +-|...|.+|+.+|.+.++.++|++.|.+....| ..+.
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 66654 5566666666666666666666666666666632 2236666666666666666666666666666543 2244
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
.++..|+..|-+.++.++|...|++-++
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5666666666666666666666666554
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=2.2e-13 Score=145.49 Aligned_cols=257 Identities=9% Similarity=0.019 Sum_probs=197.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 519 IGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYT--VLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG 596 (846)
Q Consensus 519 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 596 (846)
..+..+.|+++.|...|.++.+. .|+..... .....+...|++++|...++++.+.. |.+..+...+...|.+.|
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence 44446788888888888888775 45543322 33567778899999999999888875 667788888889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 003122 597 LIAEAESMFNMMKMSGCSPDV-------ITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPS 669 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 669 (846)
++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+... .+.++.....+..++...|+.+
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~ 280 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHD 280 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHH
Confidence 999999999998886543222 13333344444445566666777766442 3456778888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 670 KVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIV 749 (846)
Q Consensus 670 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 749 (846)
+|...+++..+.. ++..... .......++.+++++.+++..+..|. ++..+..++..|...|++++|++.|++++
T Consensus 281 ~A~~~L~~~l~~~--~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 281 TAQQIILDGLKRQ--YDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHHhcC--CCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998843 3443222 23334558999999999999988887 78888999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 750 SSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 750 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
+ ..|+...+..|+.++.+.|+.++|..+|++....
T Consensus 356 ~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 356 K--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred h--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9 8999999999999999999999999999987653
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.66 E-value=3.4e-12 Score=136.16 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CcchHHHHHHHHHHHhhc
Q 003122 760 YSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRG---GAEYAAIIQERIESLRMK 824 (846)
Q Consensus 760 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~l~~l~~~ 824 (846)
...|+..|.+.|+|+.|..+|.++. +.|++....++++.+.... +.+++....++..++...
T Consensus 710 ~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~ 774 (1088)
T KOG4318|consen 710 NDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTL 774 (1088)
T ss_pred HHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccc
Confidence 3346667888888888888888876 6677777777766665433 555555555555554433
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=4.8e-13 Score=143.87 Aligned_cols=258 Identities=11% Similarity=0.013 Sum_probs=122.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 519 IGSYMNVGEYEKAIALYKCMKKRKVMPDS--VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG 596 (846)
Q Consensus 519 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 596 (846)
..+..+.|+++.|...+.+..+.. |+. .........+...|++++|...++.+.+.. |.+..++..+...+.+.|
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHh
Confidence 344445555555555555554431 222 122223444555555666665555555543 344455555555566666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChh
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYT----AMLHAYNTAEDWEKACALFLEMETNN---IEPDSIACSALMRAFNKGGQPS 669 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~~~~~l~~~~~~~g~~~ 669 (846)
++++|.+.+..+.+.+.. +...+. .....+...+..+++.+.+.++.+.. .+.+...+..++..+...|+.+
T Consensus 202 d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 666666666655554322 221111 00111112222222233333333311 0124555555556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhhccCCCccch--hhHHHHHHHHHhcCCHHHHHHHHH
Q 003122 670 KVLLVAEFMREQDITFSDSIF-FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSI--GLLNQLLHLLGKSGRIESMMKLFF 746 (846)
Q Consensus 670 ~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 746 (846)
+|.+.+++.++..++.....+ ..........++.+.+++.+++..+..|. ++ ....++++.|.+.|++++|.+.|+
T Consensus 281 ~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 281 SAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 666666666654433211110 11111122234555555555555555554 44 445556666666666666666666
Q ss_pred --HHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 747 --KIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 747 --~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
.+.+ ..|+...+..++..+.+.|+.++|.++|++.
T Consensus 360 ~a~a~~--~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 360 NVAACK--EQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HhHHhh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444 5555555555566666666666666655554
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=5.7e-13 Score=143.25 Aligned_cols=294 Identities=12% Similarity=-0.012 Sum_probs=224.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 523 MNVGEYEKAIALYKCMKKRKVMPDS-VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEA 601 (846)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 601 (846)
...|+++.|.+.+.+..+. .|+. ..+-....+....|+++.|..++.++.+....+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3689999999999888776 3443 344555677888999999999999998754222223455568889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChhHHHHHHHH
Q 003122 602 ESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACS----ALMRAFNKGGQPSKVLLVAEF 677 (846)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~ 677 (846)
...++.+.+.. +-+...+..+...+.+.|++++|.+++.++.+.+..+. ..+. .........+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999874 33578899999999999999999999999998764433 2221 111222344444555566666
Q ss_pred HHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003122 678 MREQDIT---FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLL-NQLLHLLGKSGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 678 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 753 (846)
+.+..+. .+...+..++..+...|+.++|.+.+++..+..|......+ ..........++.+.+.+.+++.++ .
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--N 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--h
Confidence 6664442 37888899999999999999999999999888777432211 1122222345789999999999999 8
Q ss_pred CcC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHHh
Q 003122 754 EAN-F--NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESLR 822 (846)
Q Consensus 754 ~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~ 822 (846)
.|+ . .....+++.+.+.|+|++|.+.|+++......|++..+.+++..+...|+.++|..+|++...+.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 895 4 46678899999999999999999964444468999888999999999999999999999876644
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.65 E-value=8.7e-12 Score=133.14 Aligned_cols=274 Identities=14% Similarity=0.143 Sum_probs=186.0
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003122 181 GLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENG 260 (846)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g 260 (846)
.++-.+...|+.|+.+||.++|..||..|+.+.|- +|..|.-...+.+...++.++.+....|+.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34556677889999999999999999999999998 9999988888889999999999998888887776
Q ss_pred CCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHH
Q 003122 261 VGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTF 340 (846)
Q Consensus 261 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 340 (846)
.|-..+|..|+.+|...||... |+...+ ..-.++..+...|....-..++..+.- .+...||...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c-~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHC-CPHSLPDAEN- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhccc-CcccchhHHH-
Confidence 4788899999999999999765 222221 112233344555555555555544322 2333455443
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 003122 341 TSIIHLYSVNGQIENCKGVFNTMLAEGL-KPNIVSYNALMAAYASH-GMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYG 418 (846)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (846)
.+....-.|-++.+++++..+..... .|-.+ ++.-+... ..+++-..+.+...+ .|+..+|.+++..-.
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~al 215 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRAL 215 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHH
Confidence 33334445666666666655432211 11111 13322222 222333333222222 478888888888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 419 RSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGR 492 (846)
Q Consensus 419 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 492 (846)
..|+++.|..++.+|.+.|++.+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.+.|.
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888888888888888887776666655 77778888888888888888888888877777776555
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1.3e-15 Score=155.49 Aligned_cols=262 Identities=14% Similarity=0.084 Sum_probs=116.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003122 552 VLISSCCRLSRYSEALGFLDEMMDLK-IPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTA 630 (846)
Q Consensus 552 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 630 (846)
.+...+.+.|++++|.+++++..... .+.+...|..+.......++.+.|...++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 55777889999999999997665543 34566667777788888999999999999999864 2246667777777 688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 631 EDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQD-ITFSDSIFFEMVLACSLLRDWKTTIDL 709 (846)
Q Consensus 631 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 709 (846)
+++++|.+++++..+. .+++..+..++..+...|+++++..+++.+.... ...+...|...+.++.+.|++++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999888763 3566777888889999999999999999988633 345777888999999999999999999
Q ss_pred HHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003122 710 IKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGI 788 (846)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 788 (846)
++++....|. +..+...+++.+...|+.+++.++++...+ ..| |+..+..++.+|...|+.++|+.++++..+. -
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~ 244 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLK--AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N 244 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHH--H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHH--HCcCHHHHHHHHHHHhccccccccccccccccccc-c
Confidence 9999999998 778999999999999999999999999888 435 6668889999999999999999999999874 2
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 003122 789 QPSYGMFRDIVSFAQTRGGAEYAAIIQERIESL 821 (846)
Q Consensus 789 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l 821 (846)
..|+....+++..+...|+.++|..++.++-+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 347778889999999999999999999887654
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=8.6e-11 Score=112.59 Aligned_cols=500 Identities=12% Similarity=0.114 Sum_probs=235.7
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 277 NGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENC 356 (846)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 356 (846)
...++..|+.+++.-...+-+....+-..+..++.+.|++++|...+.-+.++. + ++...+..|.-.+.-.|.+.+|
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~--~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-D--APAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-C--CCcccchhHHHHHHHHHHHHHH
Confidence 344455555555444433222222333334455555566666655555554421 1 3444444444444445555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003122 357 KGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRIN 436 (846)
Q Consensus 357 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 436 (846)
..+-.... -+...-..|...-.+.++-++-..+.+.+.. ...--.+|.........+.+|++++..+...
T Consensus 111 ~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 111 KSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55443321 1222223333333444554444444444432 1122233444444445555666666555543
Q ss_pred CCCcCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHH
Q 003122 437 NLKPNLVSYSALID-AYGSNGLLAEAVEVFREMEQDGIEPNI-VSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVA 514 (846)
Q Consensus 437 ~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 514 (846)
.|+....|.-+. .|.+..-++-+.+++.-.++. .||. ...+..+....+.=.-..|+.-...+...+-. .
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~--- 252 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E--- 252 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---
Confidence 233333333222 334445555555555555443 2332 22222111111110101111111111111000 0
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003122 515 YNSAIGSYMNVG-----EYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVI 589 (846)
Q Consensus 515 ~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 589 (846)
-..+.-+++.+ .-+.|++++-.+.+. .|.. -..|+--|.+.++..+|..+.+++. |.++.-|..-+
T Consensus 253 -~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKg 323 (557)
T KOG3785|consen 253 -YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKG 323 (557)
T ss_pred -chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHH
Confidence 01112222221 234555555544433 2222 2234445566666666666655532 12222222212
Q ss_pred HHHHhcC-------CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 590 SAYSKQG-------LIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRA 661 (846)
Q Consensus 590 ~~~~~~g-------~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 661 (846)
-.++..| .+.-|.+.|+..-..+..-| +.--..+...+.-..++++.+.+++.+... +..|...-..+..+
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHH
Confidence 2222222 24445555554443333222 222334445555556677777777766654 33333334456777
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 662 FNKGGQPSKVLLVAEFMREQDITFSDSIF-FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
++..|++.+|.++|-+...-.++ +..+| ..++.+|.+.++.+-|-+++-++.. |......+..++..|.+.+.+=-
T Consensus 403 k~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT--PSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766654444 33444 3445567777777777777766542 22234456677788888888888
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCcchHHHHHHHHH
Q 003122 741 MMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG-MFRDIVSFAQTRGGAEYAAIIQERIE 819 (846)
Q Consensus 741 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~l~ 819 (846)
|.+.|+.+-. ++|++..| .|+-.....+|+.+....-.|-+. ..+.++..+. ...+.+++-+.+-+.
T Consensus 480 aaKAFd~lE~--lDP~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr-~~~nsq~E~mikvvr 547 (557)
T KOG3785|consen 480 AAKAFDELEI--LDPTPENW---------EGKRGACAGLFRQLANHKTDPIPISQMREVVHLLR-MKPNSQCEFMIKVVR 547 (557)
T ss_pred HHHhhhHHHc--cCCCcccc---------CCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHH-hCCCchHHHHHHHHH
Confidence 8888888877 88888777 466656666777766544334333 2333333333 333444555555444
Q ss_pred HHh
Q 003122 820 SLR 822 (846)
Q Consensus 820 ~l~ 822 (846)
.+.
T Consensus 548 kwa 550 (557)
T KOG3785|consen 548 KWA 550 (557)
T ss_pred HHH
Confidence 443
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=1.4e-12 Score=139.37 Aligned_cols=285 Identities=13% Similarity=0.062 Sum_probs=220.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHH
Q 003122 524 NVGEYEKAIALYKCMKKRKVMPDSVT-YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVY--SSVISAYSKQGLIAE 600 (846)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~ 600 (846)
..|++++|.+.+....+.. ++... |.....+..+.|+++.|...+.++.+. .|+.... ......+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998887765542 22333 333344558899999999999999875 4554332 244778899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHH
Q 003122 601 AESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS-------IACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-------~~~~~l~~~~~~~g~~~~A~~ 673 (846)
|...++++.+.. +-+...+..+...|.+.|+|++|.+++.++.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999864 335888999999999999999999999999986544322 133344444444455566666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 753 (846)
+++...+.- +.++.....++..+...|+.++|...+++.....+.+ .. .+..+....++.+++.+.+++.++ .
T Consensus 251 ~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~--~l--~~l~~~l~~~~~~~al~~~e~~lk--~ 323 (398)
T PRK10747 251 WWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE--RL--VLLIPRLKTNNPEQLEKVLRQQIK--Q 323 (398)
T ss_pred HHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HH--HHHHhhccCCChHHHHHHHHHHHh--h
Confidence 666665432 2378888999999999999999999999998755542 21 233334456999999999999999 8
Q ss_pred CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHHh
Q 003122 754 EAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESLR 822 (846)
Q Consensus 754 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~ 822 (846)
.|| ...+..++..+.+.|+|++|.+.|+++.+ ..|+...+..+...+.+.|+.++|..+|++-..+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 995 55788999999999999999999999997 67999988899999999999999999999876654
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.6e-12 Score=123.22 Aligned_cols=293 Identities=11% Similarity=0.091 Sum_probs=228.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHH
Q 003122 525 VGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLK-IPLT--NQVYSSVISAYSKQGLIAEA 601 (846)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A 601 (846)
..+.++|+++|-+|.+.. +....+-.+|.+.|.+.|..+.|+.+++.+.+.- ...+ ..+...|+.-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 577899999999999853 2244456678889999999999999999988741 1111 12345677889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 003122 602 ESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD----SIACSALMRAFNKGGQPSKVLLVAEF 677 (846)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (846)
+.+|..+.+.+ .--......|+..|-...+|++|++.-+++.+.+-.+. ...|.-|...+....+.+.|+.++++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998743 22366788999999999999999999999998654444 23566777778888899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 678 MREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 678 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
+.+.+++ +...-..++++....|+++.|++.++.+.+.+|..-..+...|..+|...|+.++....+.++.+ ..++.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~--~~~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME--TNTGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--ccCCc
Confidence 9998876 56666789999999999999999999999999998899999999999999999999999999999 77777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHHhhc
Q 003122 758 NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESLRMK 824 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~ 824 (846)
..-..+...-....-.+.|...+.+-+. -+|+...+..++.....+.+.-.+++..-.+..+...
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 6666677664443334555555444443 4788888888887776666554466656556665443
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.62 E-value=4.7e-09 Score=111.56 Aligned_cols=421 Identities=14% Similarity=0.067 Sum_probs=272.1
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HH
Q 003122 403 LCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVS-IC 481 (846)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~ 481 (846)
+..|...|..|.-+....|+++.+.+.|++.... .......|+.+...|...|.-..|..++++.....-.|+..+ +.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4457777888888888888888888888877643 233556778888888888888888888887765432243333 33
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHhC--C--CccCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCCCC
Q 003122 482 TLLAACG-RCGRKVNIDAVLLAAEMR--D--IKLNTVAYNSAIGSYMNV-----------GEYEKAIALYKCMKKRKVMP 545 (846)
Q Consensus 482 ~ll~~~~-~~g~~~~a~~~~~~~~~~--~--~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~p 545 (846)
.....|. +.+..+++...-..+... + -......|..+.-+|... ....+++..+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-T 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 3333333 345566665555555441 1 112333444444444321 124567778888877542 2
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 546 DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 546 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
|......+.--|+..++.+.|.....+.++.+-..+...|..|+-.+...+++.+|+.+.+..... ...|......-++
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhh
Confidence 333333344456778889999999999998866788889999999999999999999998887753 1122222222223
Q ss_pred HHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHH--HHHH----HHHhcCChhHHHHHHHHHH--------HCC-------
Q 003122 626 AYNTAEDWEKACALFLEMETN--NIEPDSIACS--ALMR----AFNKGGQPSKVLLVAEFMR--------EQD------- 682 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~--~l~~----~~~~~g~~~~A~~~~~~~~--------~~~------- 682 (846)
.-..-++.++|+.....+... ...+-..+.. .+.+ .-...++..+|......+. ..+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 333356666666555444420 0000000000 0000 0000111222211111111 011
Q ss_pred ----CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003122 683 ----ITFS------DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG 752 (846)
Q Consensus 683 ----~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 752 (846)
+.|+ ...|...+..+.+.+..++|...+.++....|. ....|+..+..+...|.+++|.+.|..++.
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~-- 712 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALA-- 712 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--
Confidence 1222 234556777888899999999999988877776 778888999999999999999999999999
Q ss_pred CCcC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCC-CHHhHHHHHHHHHhcCCcchHHHHHHHHHHHhhccCCC
Q 003122 753 AEAN-FNTYSILLKNLLAAGNWRKYIE--VLQWMEDAGIQP-SYGMFRDIVSFAQTRGGAEYAAIIQERIESLRMKSGDP 828 (846)
Q Consensus 753 ~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~~~~ 828 (846)
++|| +.+...++.+|.+.|+..-|.. ++..+.+ +.| ++..|..++..+...|+.++|.+.+....+|.+-....
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 9996 5599999999999998888887 8888887 445 56689999999999999999999999999998766544
Q ss_pred CCC
Q 003122 829 SFD 831 (846)
Q Consensus 829 ~~~ 831 (846)
.+.
T Consensus 791 pFs 793 (799)
T KOG4162|consen 791 PFS 793 (799)
T ss_pred ccc
Confidence 443
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.59 E-value=2.3e-10 Score=121.27 Aligned_cols=510 Identities=14% Similarity=0.071 Sum_probs=304.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH---HHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHH
Q 003122 242 STGNWREALKVCKKMTENGVGPDLVTHNIVLSA---YKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDK 318 (846)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 318 (846)
..+..++++.-+......+...+..++..+..+ |...++.+++ ++-........|....+.+++...
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm-------- 308 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM-------- 308 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH--------
Confidence 445667777777777766666666666665543 3444555555 222222221222211111111100
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 319 AIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEI 398 (846)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (846)
-.+.++... .+.-|...|..+.-+....|+++.+.+.|++....- --....|..+...|...|.-..|..++++.
T Consensus 309 --~~~~k~r~~--~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~ 383 (799)
T KOG4162|consen 309 --LLLRKLRLK--KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRES 383 (799)
T ss_pred --HHHHHHHHh--hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 011112111 111366677777777777788888888888776532 224456777777777788877788877776
Q ss_pred HHCCCCCC-HhhHHHHHHHHH-hcCChHHHHHHHHHHHHC--CC--CcCHHHHHHHHHHHHh-----------CCCHHHH
Q 003122 399 KKNGLCPD-IVSYTSLLNAYG-RSQQPVKAREVFNMMRIN--NL--KPNLVSYSALIDAYGS-----------NGLLAEA 461 (846)
Q Consensus 399 ~~~g~~p~-~~~~~~ll~~~~-~~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~li~~~~~-----------~g~~~~A 461 (846)
....-.|+ ...+-..-..|. +-+.++++++.-.+.... +. ......|..+.-+|.. .....++
T Consensus 384 ~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 384 LKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred cccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 55432233 333333333333 335666666665555541 10 1123344444444322 1234678
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 003122 462 VEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKR 541 (846)
Q Consensus 462 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 541 (846)
++.+++..+.+ +.|......+.--|+..++++.|.....+....+...+...|..+.-.+...+++.+|+.+.+...+.
T Consensus 464 lqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 464 LQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 88888887764 33444444455566777888888888888887766778888888888888888899998888877654
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C-HH
Q 003122 542 KVMPD-SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSP-D-VI 618 (846)
Q Consensus 542 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~ 618 (846)
.|+ ......-+..-...++.++|......++..- . +.. .....++-....+....+.-.--.| + +.
T Consensus 543 --~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w-e-~~~-------~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 543 --FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW-E-AEY-------GVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred --hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH-H-hhh-------hHhhhhhhhhhhhhhcccccCcccccccch
Confidence 222 1111122222234677788877777766421 0 000 0111111222233333322110011 1 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIE--PD------SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIF 690 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 690 (846)
++..+...... +.+.+..-.. +...... |+ ...|......+.+.++.++|...+.++....+- ....|
T Consensus 612 ~sr~ls~l~a~--~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~ 687 (799)
T KOG4162|consen 612 TSRYLSSLVAS--QLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVY 687 (799)
T ss_pred hhHHHHHHHHh--hhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHH
Confidence 33333222221 1111110000 1111112 22 235667777888999999999888888876543 67788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCc-CHHHHHHHHHHH
Q 003122 691 FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMK--LFFKIVSSGAEA-NFNTYSILLKNL 767 (846)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p-~~~~~~~l~~~~ 767 (846)
+..+..+...|++++|.+.|..+...+|. ++.+...++.++.+.|+-.-|.. ++..+++ ++| +...|+.|+..+
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVF 764 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHH
Confidence 88889999999999999999999988888 77888999999999996666666 9999999 999 677999999999
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003122 768 LAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 768 ~~~g~~~~A~~~~~~~~~ 785 (846)
.+.|+.++|.+.|+.+.+
T Consensus 765 k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHccchHHHHHHHHHHHh
Confidence 999999999999999876
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=9.1e-12 Score=122.16 Aligned_cols=270 Identities=13% Similarity=0.054 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 513 VAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAY 592 (846)
Q Consensus 513 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 592 (846)
..|..-+.+-.+.|+.+.+-.++.+.-+.--.++...+-.........|+++.|..-++++.+.+ +-+..+.....++|
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y 197 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAY 197 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHH
Confidence 33444445555566666666666666554223333344445555666667777777777666654 45556666667777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 593 SKQGLIAEAESMFNMMKMSGCSPDV-------ITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKG 665 (846)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 665 (846)
.+.|++.....++.++.+.|.-.|. .+|+.+++-....+..+.-...|++.... .+-++..-.+++.-+...
T Consensus 198 ~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 198 IRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHc
Confidence 7777777777777777766544442 45666666666655555555666666543 445566677788888899
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 003122 666 GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLF 745 (846)
Q Consensus 666 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 745 (846)
|+.++|.++.++..+.+.++. .+....+..-++...=++.+++.....|. ++..+.+|+..|.+++.|.+|...|
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred CChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999998776544 22223345667777777777777777776 6789999999999999999999999
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 746 FKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 746 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
+.+++ ..|+...|..+++++.+.|+..+|.+.+++....-.+|+
T Consensus 352 eaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 352 EAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 99999 999999999999999999999999999998875434443
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=2.3e-11 Score=115.44 Aligned_cols=290 Identities=16% Similarity=0.139 Sum_probs=219.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 003122 173 HNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPS---RSTYNNLINACGSTGNWREA 249 (846)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~~A 249 (846)
.++.++|.++|-+|.+.. +-+..+.-+|.+.|-+.|..|.|+.+.+.+.++--.+. ..+...|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467899999999998732 34456667788899999999999999999887522111 12445567788899999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 250 LKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTT----THNIVIYCLVKLGQYDKAIDLFHS 325 (846)
Q Consensus 250 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~ 325 (846)
+++|..+.+.|.- -......|+..|-...++++|+.+-+++.+.+..+..+ .|.-+...+....+++.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999999876432 45667788999999999999999999888776554432 455666666678899999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003122 326 MREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCP 405 (846)
Q Consensus 326 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 405 (846)
..+.++. .+.+--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+.. +
T Consensus 206 Alqa~~~---cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 206 ALQADKK---CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHhhCcc---ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 9987766 5556667788899999999999999999987533334467888999999999999999999988753 3
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHC
Q 003122 406 DIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGS---NGLLAEAVEVFREMEQD 471 (846)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~ 471 (846)
....-..+...-....-.+.|...+.+-... +|+...+..+|+.... .|...+.+.+++.|+..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 4444455555555556667777766665555 7899999999987655 34567777788888754
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=7.8e-10 Score=106.17 Aligned_cols=457 Identities=12% Similarity=0.108 Sum_probs=210.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 003122 131 IKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQ 210 (846)
Q Consensus 131 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 210 (846)
+..+....++..|+.+++.....+. .....+---+..++.+.|++++|...|.-+.+. -.++...+..|..++.-.|+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHH
Confidence 5556666777777777776654331 111123333556666667777777766665542 24555666666666666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003122 211 WRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFEL 290 (846)
Q Consensus 211 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 290 (846)
+.+|..+-.... .+...-..|.....+.|+-++-..+...+.+. ..---+|.+.....-.+++|++++..
T Consensus 107 Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 666666554432 13333344444445556555555544444331 11112222222222334555555555
Q ss_pred HHhCCCCCChHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003122 291 MKGTNIRPDTTTHNI-VIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLK 369 (846)
Q Consensus 291 m~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 369 (846)
++.. .|+-...|. +.-+|.+..-++-+.+++.-.+..-++ +..+.|..+....
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd---StiA~NLkacn~f--------------------- 230 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD---STIAKNLKACNLF--------------------- 230 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC---cHHHHHHHHHHHh---------------------
Confidence 5443 123223322 223344444444444444444433222 2333333332222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCcCHHH
Q 003122 370 PNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRS-----QQPVKAREVFNMMRINNLKPNLVS 444 (846)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~ 444 (846)
+.=.-..|+.-.+++.+++-.. | ..+.-.++. .+-+.|++++-.+.+. -|..
T Consensus 231 --------------Rl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA-- 287 (557)
T KOG3785|consen 231 --------------RLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA-- 287 (557)
T ss_pred --------------hhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--
Confidence 2211122222223332221100 0 011111111 2224455555444432 2221
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhCCCccCHH-HHHHH
Q 003122 445 YSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAA-----CGRCGRKVNIDAVLLAAEMRDIKLNTV-AYNSA 518 (846)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l 518 (846)
-..|+--|.+.+++++|..+.+++.- ..|-......+..+ ........-|...|+.+-..+...|+. ---++
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 12234445666667776666655432 12222222222111 111222333444444443333322222 12334
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 519 IGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLI 598 (846)
Q Consensus 519 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 598 (846)
...+.-..++++.+..++.+..--...|...+ .+..+.+..|++.+|+++|-.+....++.+..-...|..+|.+++.+
T Consensus 366 As~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCc
Confidence 44444555666666666665554323333333 35667777777777777776665544443333344556677777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003122 599 AEAESMFNMMKMSGCSPDVITYTA-MLHAYNTAEDWEKACALFLEMETNNIEPDSIACS 656 (846)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 656 (846)
+-|+.++-++.. +.+..+... +.+.|.+.+.+--|-+.|+.+.. ..|++.-|.
T Consensus 445 ~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 445 QLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred hHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 777665544432 223333333 33445566666666677776665 455555553
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6.9e-10 Score=108.82 Aligned_cols=275 Identities=11% Similarity=0.010 Sum_probs=203.0
Q ss_pred CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 003122 507 DIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVT-YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVY 585 (846)
Q Consensus 507 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 585 (846)
-++.|+.....+.+.+...|+.++|+..|++..-. .|+..+ .....-.+.+.|+++.-..+...+.... +-....|
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 34557777888888888888888888888887755 343322 2222333456778887777777766532 2233333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 003122 586 SSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIE-PDSIACSALMRAFNK 664 (846)
Q Consensus 586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~ 664 (846)
-.-+......+++..|+.+-++.++.+ +-+...|-.-+..+...|+.++|.-.|+.++. +. -+...|..|+.+|..
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHh
Confidence 333444556778888888888888753 22456666666778888999999999998887 44 457789999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHH-HhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH
Q 003122 665 GGQPSKVLLVAEFMREQDITFSDSIFFEMV-LAC-SLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM 742 (846)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 742 (846)
.|++.||....+.....-+. +..++..++ .++ .....-++|..++++.....|. -..+-+.++..+...|+.+.++
T Consensus 381 ~~~~kEA~~~An~~~~~~~~-sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLFQN-SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred hchHHHHHHHHHHHHHHhhc-chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHH
Confidence 99999998887777763222 455555443 333 2334468899999999988888 5567788999999999999999
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 743 KLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 743 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.++++.+. ..||....+.|+..+...+.+++|.+.|..++. +.|...
T Consensus 459 ~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 459 KLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred HHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 99999999 899999999999999999999999999999986 556544
No 63
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.52 E-value=3.4e-09 Score=115.15 Aligned_cols=591 Identities=13% Similarity=-0.004 Sum_probs=321.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003122 211 WRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFEL 290 (846)
Q Consensus 211 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 290 (846)
...|+..|-+..+... .-...|..|...|+..-+...|.+.|++.-+.+.. +...+..+...|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 5555555555555421 12345666666666666666677777766655432 555666666777777777776666332
Q ss_pred HHhCCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003122 291 MKGTNI-RPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLK 369 (846)
Q Consensus 291 m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 369 (846)
.-+... ..-...|--+.-.|.+.++...|+.-|+......|. |...|..+..+|...|++..|.++|.++... .
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk---D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK---DYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch---hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 222110 000112222344455667777777777766655554 6667777777777777777777777666553 3
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHhcCChHHHHHHHH-------HHHH
Q 003122 370 PNIV-SYNALMAAYASHGMSKEALSVFNEIKKN------GLCPDIVSYTSLLNAYGRSQQPVKAREVFN-------MMRI 435 (846)
Q Consensus 370 p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~-------~m~~ 435 (846)
|+.. .-.......+..|.+.+|+..+...... +...-..++..+...+...|-..+|...++ -...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4332 1122233345566777776666655431 011112222222222222222222222222 2222
Q ss_pred CCCCcCHHHHHHHHHHH-----------------------HhCCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 436 NNLKPNLVSYSALIDAY-----------------------GSNGLL---A---EAVEVFREMEQDGIEPNIVSICTLLAA 486 (846)
Q Consensus 436 ~~~~~~~~~~~~li~~~-----------------------~~~g~~---~---~A~~~~~~~~~~g~~~~~~~~~~ll~~ 486 (846)
+....+...|-.+.+++ ...+.. + -+.+.+-.-+. ...+..++..|...
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGIN 784 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHH
Confidence 21112222222222221 111111 1 11111111111 11123344444333
Q ss_pred HHh----cC----CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003122 487 CGR----CG----RKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCC 558 (846)
Q Consensus 487 ~~~----~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 558 (846)
|.+ +| +...|...+...+... ..+...||.|.-. ...|.+.-|...|-+-.... +....+|..+.-.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEE
Confidence 322 11 2235555555555432 2366777777655 56677777777776665542 346667888888888
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--H--cCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 559 RLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMK--M--SGCSPDVITYTAMLHAYNTAEDWE 634 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~--~~~~p~~~~~~~l~~~~~~~g~~~ 634 (846)
+..+++.|...|...+... |.+...|..........|+.-++..+|..-- . .|--++..-|..........|+.+
T Consensus 862 ~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred ecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 8889999999999888764 5566777666666667888888888887622 2 233455555555555566677766
Q ss_pred HHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH---C--CCCCCHHHHHHHHHHHHhc
Q 003122 635 KACALFLEMET---------NNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMRE---Q--DITFSDSIFFEMVLACSLL 700 (846)
Q Consensus 635 ~A~~~~~~~~~---------~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~--~~~~~~~~~~~l~~~~~~~ 700 (846)
+-+...+++-. .+.+.+..+|...+....+.+.+.+|.+...+.+. . ...-+...-...++.+...
T Consensus 941 ~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lsl 1020 (1238)
T KOG1127|consen 941 ESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSL 1020 (1238)
T ss_pred HHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 65544444321 12344467888888888888888888887777653 1 1111222334566778888
Q ss_pred CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---CHH-HHHHHHHHHHhcCCHHHH
Q 003122 701 RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA---NFN-TYSILLKNLLAAGNWRKY 776 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~-~~~~l~~~~~~~g~~~~A 776 (846)
|.++.|.........+...... ...-+..-.|+++++.+.|++++. +.- |.+ ....++.....+|.-+.|
T Consensus 1021 gefe~A~~a~~~~~~evdEdi~----gt~l~lFfkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A 1094 (1238)
T KOG1127|consen 1021 GEFESAKKASWKEWMEVDEDIR----GTDLTLFFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDA 1094 (1238)
T ss_pred cchhhHhhhhcccchhHHHHHh----hhhHHHHHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHH
Confidence 8888887766654332222111 111122457899999999999987 433 322 344455556677788888
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 003122 777 IEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESL 821 (846)
Q Consensus 777 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l 821 (846)
...+-+.... -+++......+....--+.+.+....+.++++.+
T Consensus 1095 ~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl 1138 (1238)
T KOG1127|consen 1095 QFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKL 1138 (1238)
T ss_pred HHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence 8877666653 2345555555555444455555556666666554
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.52 E-value=3.5e-09 Score=110.22 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=77.4
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 277 NGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENC 356 (846)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 356 (846)
..+++...++..+.+++. .+-...|.....-.++..|+.++|.+..+.....++. +.++|..+.-.+-...++++|
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~---S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK---SHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc---cchhHHHHHHHHhhhhhHHHH
Confidence 345555555555555542 2333444444444455556666666655555543332 455555555555555556666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003122 357 KGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRIN 436 (846)
Q Consensus 357 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 436 (846)
++.|..++..+ +-|...|.-+.-.-.+.++++.......++.+.. +.....|..++.++.-.|+...|..+++...+.
T Consensus 95 iKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 95 IKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666555543 2233344444444445555555555555444421 112334555555555555555555555555443
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=5.6e-12 Score=140.92 Aligned_cols=182 Identities=12% Similarity=0.017 Sum_probs=109.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 003122 596 GLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLV 674 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 674 (846)
+++++|...++++++.+ +.+...+..+...+...|++++|...|+++++ +.|+ ...+..+..++...|++++|+..
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34666666666666642 22356666666666666777777777777666 3343 44566666666677777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003122 675 AEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAE 754 (846)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 754 (846)
++++++.++. +...+..++.++...|++++|+..++++....+...+..+..++.++...|++++|.+.+.++.. ..
T Consensus 395 ~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~ 471 (553)
T PRK12370 395 INECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QE 471 (553)
T ss_pred HHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--cc
Confidence 7777765544 22223333444555666777777766665443322455566667777777777777777777665 55
Q ss_pred cCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 755 ANFN-TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 755 p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
|+.. ....++..|...| ++|...++++.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 5433 4444455566666 366666666544
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=2e-12 Score=122.26 Aligned_cols=238 Identities=12% Similarity=0.046 Sum_probs=197.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 546 DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 546 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
|-..-+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|..+|.+..+...|+.+|.+-++. ++-|+.....+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3333467888999999999999999998875 467778888999999999999999999998875 3445555667788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 705 (846)
.+...++.++|.++|+...+.. +.+..+...+...|.-.++++-|+.+|+++++.|+. +++.|+.++.+|...++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 8888999999999999998842 334556667777888899999999999999999987 89999999999999999999
Q ss_pred HHHHHHhhccC--CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 706 TIDLIKQMEPS--FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF-NTYSILLKNLLAAGNWRKYIEVLQW 782 (846)
Q Consensus 706 A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 782 (846)
++.-|+++... .|.....+|.+|+......||+..|.+.|+-++. .+|+. .+++.|+-.-.+.|+.++|..+++.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999887533 3444578899999999999999999999999998 77854 4899998888999999999999998
Q ss_pred HHHCCCCCCH
Q 003122 783 MEDAGIQPSY 792 (846)
Q Consensus 783 ~~~~g~~p~~ 792 (846)
+.. +.|+.
T Consensus 455 A~s--~~P~m 462 (478)
T KOG1129|consen 455 AKS--VMPDM 462 (478)
T ss_pred hhh--hCccc
Confidence 865 55653
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.50 E-value=3.5e-09 Score=110.24 Aligned_cols=457 Identities=12% Similarity=0.150 Sum_probs=289.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHH
Q 003122 206 GRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKAL 285 (846)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 285 (846)
...+++...+++.+.+++. .+-...+.....-.+...|+-++|......-...++. +.+.|..+.-.+....++++|+
T Consensus 18 yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHH
Confidence 3567788888888888774 3445556665566667788888888888777776554 6677888877778888889999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 286 SYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLA 365 (846)
Q Consensus 286 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (846)
+.|......+ +.|...+.-+.-.-.+.|+++.....-....+..+. ....|..++.++.-.|++..|..++++..+
T Consensus 96 Kcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~---~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 96 KCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS---QRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888765 446777777777777888888888888877776655 567788888888888999999988888876
Q ss_pred cC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003122 366 EG-LKPNIVSYNALM------AAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNL 438 (846)
Q Consensus 366 ~g-~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 438 (846)
.. ..|+...|.... ....+.|.+++|.+.+..-... +.-....-..-...+.+.+++++|..++..+...
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-- 248 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER-- 248 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--
Confidence 54 245555443332 2345677777777777655432 1112222334566778889999999999988877
Q ss_pred CcCHHHHHHHHH-HHHhCCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCccCHHHH
Q 003122 439 KPNLVSYSALID-AYGSNGLLAEAV-EVFREMEQDGIEPNIVSICTL-LAACGRCGRKVNIDAVLLAAEMRDIKLNTVAY 515 (846)
Q Consensus 439 ~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 515 (846)
.||...|..... ++.+-.+.-+++ .+|....+. .|-......+ +....-..-.+...+++......|+++ ++
T Consensus 249 nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf 323 (700)
T KOG1156|consen 249 NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VF 323 (700)
T ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hh
Confidence 466665555443 343333333344 555555443 1111111111 111111222334445555556666543 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh----hCC----------CCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 003122 516 NSAIGSYMNVGEYEKAIALYKCMK----KRK----------VMPDSV--TYTVLISSCCRLSRYSEALGFLDEMMDLKIP 579 (846)
Q Consensus 516 ~~li~~~~~~g~~~~A~~~~~~~~----~~~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 579 (846)
..+...|-.-...+-..++...+. ..| -+|... ++..++..+-..|+++.|..+++.++..- |
T Consensus 324 ~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-P 402 (700)
T KOG1156|consen 324 KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-P 402 (700)
T ss_pred hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-c
Confidence 333333322222211111111111 111 144444 34567788889999999999999988752 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------
Q 003122 580 LTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI------ 653 (846)
Q Consensus 580 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------ 653 (846)
.-...|..-.+.+...|++++|..++++..+.+ .+|...-.--+.-..++++.++|.++.......|. +..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~m 479 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEM 479 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHh
Confidence 334667777888999999999999999998864 45555444556666788999999999888887664 221
Q ss_pred --HHHHH--HHHHHhcCChhHHHHHHHHHHH
Q 003122 654 --ACSAL--MRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 654 --~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
.|..+ +.+|.++|++..|+.-|..+..
T Consensus 480 qcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 480 QCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 22222 4467788888888766655543
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=2.2e-12 Score=122.06 Aligned_cols=235 Identities=13% Similarity=0.090 Sum_probs=206.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 516 NSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQ 595 (846)
Q Consensus 516 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 595 (846)
+.+..+|.+.|.+.+|.+.|+..++. .|-..||..|-..|.+..+...|+.++.+-++. +|.++.....+...+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56888999999999999999998887 677788999999999999999999999998886 466666667788899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003122 596 GLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVA 675 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (846)
++.++|.++|+...+.. +.++.....+...|.-.++.+-|+.+|+++++.|+. ++..|+.+.-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999864 446777888888888899999999999999999864 6678888988999999999999999
Q ss_pred HHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003122 676 EFMREQD--ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 676 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 753 (846)
++++..- +.....+|+.++.+....|++.-|.+.|+-....++. ...++|+|+-.-.+.|++++|+.++..+.. .
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s--~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS--V 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh--h
Confidence 9999743 3345678999999999999999999999999988887 778999999999999999999999999988 8
Q ss_pred CcCHH
Q 003122 754 EANFN 758 (846)
Q Consensus 754 ~p~~~ 758 (846)
.|+..
T Consensus 459 ~P~m~ 463 (478)
T KOG1129|consen 459 MPDMA 463 (478)
T ss_pred Ccccc
Confidence 88643
No 69
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=3.5e-10 Score=111.22 Aligned_cols=294 Identities=12% Similarity=0.093 Sum_probs=177.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 003122 349 VNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKARE 428 (846)
Q Consensus 349 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 428 (846)
..|++..|+++..+..+.+-.| ...|..-+.+--..|+.+.+-.++.+..+.--.++...+.+..+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3688888888888877765332 335555666677788888888888888775334455667777788888888888888
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 003122 429 VFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDI 508 (846)
Q Consensus 429 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 508 (846)
-++++.+.+ +-+........++|.+.|++.+...++.++.+.|.-.+...-.
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~--------------------------- 226 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR--------------------------- 226 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH---------------------------
Confidence 888887765 5567778888888999999999999999998887655533210
Q ss_pred ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 509 KLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSV 588 (846)
Q Consensus 509 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 588 (846)
....+|+.+++-....+..+.-...++..... .+.+...-..++.-+...|+.++|.++..+..+.+..+... .
T Consensus 227 -le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~ 300 (400)
T COG3071 227 -LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----R 300 (400)
T ss_pred -HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----H
Confidence 01123333333333333333333333333221 12233344445555555666666666666665554444311 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003122 589 ISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQP 668 (846)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 668 (846)
.-.+.+-++...-++..++..+.. +.++..+.+|+..|.+.+.|.+|...|+..++ ..|+..+|+.+..++.+.|+.
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCCh
Confidence 112344455555555555544431 22345566666666666666666666665555 456666666666666666666
Q ss_pred hHHHHHHHHHHH
Q 003122 669 SKVLLVAEFMRE 680 (846)
Q Consensus 669 ~~A~~~~~~~~~ 680 (846)
.+|.+.+++.+.
T Consensus 378 ~~A~~~r~e~L~ 389 (400)
T COG3071 378 EEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHH
Confidence 666666665553
No 70
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.49 E-value=1.7e-08 Score=109.89 Aligned_cols=637 Identities=12% Similarity=0.012 Sum_probs=339.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003122 138 GAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNI 217 (846)
Q Consensus 138 g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 217 (846)
++...|+..|=...+.. +.-...|..|...|+...+...|...|+...+.. .-+...+......|++...++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 44677777776666544 3445689999999998889999999999988743 34577788899999999999999988
Q ss_pred HHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 003122 218 FDDMLRAAV-APSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNI 296 (846)
Q Consensus 218 ~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 296 (846)
.-..-+... ..-...|..+.-.|...++...|+.-|+...+..+. |...|..+..+|...|++..|+++|.+....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 433222211 011123334445567888999999999998887654 8889999999999999999999999988765
Q ss_pred CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------
Q 003122 297 RPD-TTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLP----DIVTFTSIIHLYSVNGQIENCKGVFNTMLA------ 365 (846)
Q Consensus 297 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------ 365 (846)
.|+ ...---..-..|..|.+.+|+..+..+........+ -..++-.+...+...|-...|...++..++
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 343 233333445567899999999998887754321000 122233333333334444444444444332
Q ss_pred -cCCCCCHHHHHHHHHHHHh---cC--CHH-HHHHH-HHHHHHCCC--------------------CCCHhhHHHHHHHH
Q 003122 366 -EGLKPNIVSYNALMAAYAS---HG--MSK-EALSV-FNEIKKNGL--------------------CPDIVSYTSLLNAY 417 (846)
Q Consensus 366 -~g~~p~~~~~~~li~~~~~---~g--~~~-~A~~~-~~~m~~~g~--------------------~p~~~~~~~ll~~~ 417 (846)
.....+...|-.+..++.- .. -+. .-..+ +.+....+. ..+..+|..|+..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 2111122222222221110 00 000 00000 011111111 11222333333333
Q ss_pred Hh-------c-CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 418 GR-------S-QQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGR 489 (846)
Q Consensus 418 ~~-------~-g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 489 (846)
.+ . .+...|...+.+.++.. .-+..+|+.|.-. ...|++.-|...|-+..... +....+|..+...+.+
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEe
Confidence 22 1 11234555555554432 2345556555433 44566666666666555542 3445566666666667
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHh----hCCCCCCHHHHHHHHHHHHhcCCHhH
Q 003122 490 CGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMK----KRKVMPDSVTYTVLISSCCRLSRYSE 565 (846)
Q Consensus 490 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~~li~~~~~~g~~~~ 565 (846)
..+++.|...|....... +.|...|-.........|+.-++..+|..-- ..|-.++..-|..........|+.++
T Consensus 863 n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred cccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 777777777777666553 3355566555555556676666666665411 12223333333333333344555444
Q ss_pred HHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH----HHHHHHHhcC
Q 003122 566 ALGFLDEMMD---------LKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMS-GCSPDVITYT----AMLHAYNTAE 631 (846)
Q Consensus 566 A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g 631 (846)
-+...+++-. .+.+.+...|...+......+.+.+|.+...++... ...-+...|+ .+...++..|
T Consensus 942 ~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslg 1021 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLG 1021 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 3333322211 134555666666666666666666666555543320 0012333333 3344455566
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 003122 632 DWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ-DITFSD-SIFFEMVLACSLLRDWKTTIDL 709 (846)
Q Consensus 632 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 709 (846)
.++.|..-+..... ..+..+...-+. ..-.|+++++.+.|+++... +-.-+. .....++......+..+.|...
T Consensus 1022 efe~A~~a~~~~~~---evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~l 1097 (1238)
T KOG1127|consen 1022 EFESAKKASWKEWM---EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFL 1097 (1238)
T ss_pred chhhHhhhhcccch---hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHH
Confidence 66655443332211 111111111111 13357788888888888762 112122 2333444455666777777776
Q ss_pred HHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 710 IKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNT---YSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+-+.....+. +......|..++.-..+-..-....++..+ +..+ ... -...--.|..+|+-.-....+++..-
T Consensus 1098 Lfe~~~ls~~-~~~sll~L~A~~ild~da~~ssaileel~k--l~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h 1174 (1238)
T KOG1127|consen 1098 LFEVKSLSKV-QASSLLPLPAVYILDADAHGSSAILEELEK--LLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVH 1174 (1238)
T ss_pred HHHHHHhCcc-chhhHHHHHHHHHHhhhhhhhHHHHHHHHH--hhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 6665544443 444454555554444333333333333332 1111 111 11222347778887777788888765
Q ss_pred CCCCCCHH
Q 003122 786 AGIQPSYG 793 (846)
Q Consensus 786 ~g~~p~~~ 793 (846)
..|...
T Consensus 1175 --~~P~~~ 1180 (1238)
T KOG1127|consen 1175 --SNPGDP 1180 (1238)
T ss_pred --cCCCCh
Confidence 455433
No 71
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=5.3e-08 Score=105.84 Aligned_cols=572 Identities=14% Similarity=0.160 Sum_probs=311.3
Q ss_pred cCCCCHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHH
Q 003122 122 FARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYC-----ARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAE 196 (846)
Q Consensus 122 ~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 196 (846)
|+..+...+..-|.+.|-+.+|++.|..+...+... .+++ .++ .|.-.-.++++.+.+..|...+++-|..
T Consensus 604 FtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pE---wLv-~yFg~lsve~s~eclkaml~~NirqNlQ 679 (1666)
T KOG0985|consen 604 FTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPE---WLV-NYFGSLSVEDSLECLKAMLSANIRQNLQ 679 (1666)
T ss_pred cccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHH---HHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhH
Confidence 444455667777778888888887776554332110 0111 122 2333456778888888888777777777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---------
Q 003122 197 TYNALISAHGRAGQWRWAMNIFDDMLRA-----------AVAPSRSTYNNLINACGSTGNWREALKVCKKM--------- 256 (846)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--------- 256 (846)
+...+..-|...=-.+..+++|+..... ++.-|..+.--.|.+.|+.|.+.+.+++.++-
T Consensus 680 i~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvK 759 (1666)
T KOG0985|consen 680 IVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVK 759 (1666)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHH
Confidence 7777777777665666677777765442 23445555556778888888887777665332
Q ss_pred ---HHC---------------CCCCChHHHH------HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHH-------
Q 003122 257 ---TEN---------------GVGPDLVTHN------IVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNI------- 305 (846)
Q Consensus 257 ---~~~---------------g~~~~~~~~~------~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~------- 305 (846)
++. |+.+|.+.|- ..|..|.+.=+....-.+...++...+. ....-+.
T Consensus 760 NfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~-E~~ik~Li~~v~gq 838 (1666)
T KOG0985|consen 760 NFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCS-EDFIKNLILSVRGQ 838 (1666)
T ss_pred HHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCc-HHHHHHHHHHHhcc
Confidence 111 1222222221 1122332222222222222222222111 1111111
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHH-HH---HHHH-----HH-------
Q 003122 306 -----VIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENC-KG---VFNT-----ML------- 364 (846)
Q Consensus 306 -----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~---~~~~-----m~------- 364 (846)
|+.-.-+.+++.-....++.....|.. |..++|+|...|...++-.+- ++ .++. ..
T Consensus 839 ~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~---d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~l 915 (1666)
T KOG0985|consen 839 FPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ---DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHL 915 (1666)
T ss_pred CChHHHHHHHHhhhhHHHHHHHHHHHHhccCc---chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCce
Confidence 122222444555555566666666654 778888888776654332111 00 0000 00
Q ss_pred -----HcCC--------CCCHHHHHHHHHHHHhcCCHHH---H--------HHHHHHHHHCCCC--CCHhhHHHHHHHHH
Q 003122 365 -----AEGL--------KPNIVSYNALMAAYASHGMSKE---A--------LSVFNEIKKNGLC--PDIVSYTSLLNAYG 418 (846)
Q Consensus 365 -----~~g~--------~p~~~~~~~li~~~~~~g~~~~---A--------~~~~~~m~~~g~~--p~~~~~~~ll~~~~ 418 (846)
++|. --....|....+.+.+..+.+- . ..+.++..+.+++ .|+...+.-+.++.
T Consensus 916 A~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfM 995 (1666)
T KOG0985|consen 916 ACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFM 995 (1666)
T ss_pred EEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHH
Confidence 0110 0001123333333333333221 1 2344555544332 34455566677777
Q ss_pred hcCChHHHHHHHHHHHHCCC--CcCHHHHHHHH---------------------------HHHHhCCCHHHHHHHHHHHH
Q 003122 419 RSQQPVKAREVFNMMRINNL--KPNLVSYSALI---------------------------DAYGSNGLLAEAVEVFREME 469 (846)
Q Consensus 419 ~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li---------------------------~~~~~~g~~~~A~~~~~~~~ 469 (846)
..+-+.+-+++++++.-... .-+...-|.|| .....++-+++|+.+|++.-
T Consensus 996 tadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 996 TADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred hcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc
Confidence 77777888888877764321 11111122222 22334455566666665532
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 003122 470 QDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVT 549 (846)
Q Consensus 470 ~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 549 (846)
.+......|+.- -+..+.|.+.-+... .+..|..+..+-.+.|.+.+|++.|-+. .|...
T Consensus 1076 -----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~ 1135 (1666)
T KOG0985|consen 1076 -----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSN 1135 (1666)
T ss_pred -----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHH
Confidence 233333333332 233444444333322 5678899999999999999988877543 36667
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 550 YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT 629 (846)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (846)
|..+++...+.|.+++-..++..+.+....|... +.|+-+|++.+++.+-++++. .||......+++-|..
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFE 1206 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhh
Confidence 8899999999999999999988887765555544 467788999888877655432 4787777888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 630 AEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDL 709 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 709 (846)
.|.++.|.-+|.... .|..|...+...|.+..|....+++- +..+|-.+..+|...+.+.-|.
T Consensus 1207 ~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-- 1269 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLAQ-- 1269 (1666)
T ss_pred hhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHHH--
Confidence 888888877776554 36677777777788777776555443 3445555555555554443332
Q ss_pred HHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 710 IKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+-..+-.+...-+..|+..|...|-+++-+.+++..+.
T Consensus 1270 ---iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1270 ---ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred ---hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 11111122223344555555556666665555555543
No 72
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.8e-08 Score=107.08 Aligned_cols=349 Identities=15% Similarity=0.144 Sum_probs=176.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHH
Q 003122 241 GSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAI 320 (846)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 320 (846)
...|.+++|+.+|.+..+. ..|=..|-..|.+++|.++-+.-..-. =..||.....-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 3456666666666665542 233344555666666666655432211 1234444555555566666666
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 321 DLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKK 400 (846)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (846)
+.|++... +--..+..|. .++.....+.+++. |...|.-....+...|+.+.|+.+|.....
T Consensus 879 eyyEK~~~------hafev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 879 EYYEKAGV------HAFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHhcCC------hHHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 66665421 1111111111 12222222333322 334444445555556777777776665543
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003122 401 NGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSI 480 (846)
Q Consensus 401 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 480 (846)
|-++++..|-.|+.++|-++-++- -|......|.+.|-..|++.+|+..|.++.. +
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------f 996 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------F 996 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------H
Confidence 455666666667777666655432 2444555566666667777777766665542 2
Q ss_pred HHHHHHHHh---------------cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHH-H-------H
Q 003122 481 CTLLAACGR---------------CGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALY-K-------C 537 (846)
Q Consensus 481 ~~ll~~~~~---------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~-------~ 537 (846)
...|..|-. ..+.-.|.+.|++.-- -.......|-+.|.+.+|+++- + +
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 222222111 1122222223322210 0122234466677776666542 1 1
Q ss_pred HhhC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC
Q 003122 538 MKKR--KVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKM-SGCS 614 (846)
Q Consensus 538 ~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 614 (846)
++.. ....|....+.-.+.++...++++|..++-...+. ..-+. +|+..+..--.++-+.|.- ++-.
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHHHHHhcCcCcCCC
Confidence 1222 22346666777777777888888888887766542 11222 3444444444444455543 2123
Q ss_pred CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 003122 615 PDV----ITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSK 670 (846)
Q Consensus 615 p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 670 (846)
|+. .....+...|.++|.+..|-+-|.++-+. ..-++++.+.|+.++
T Consensus 1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 442 45567777888888888888777665431 123455666666554
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=3.2e-11 Score=134.82 Aligned_cols=249 Identities=12% Similarity=0.014 Sum_probs=186.8
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---------hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 527 EYEKAIALYKCMKKRKVMPDSVTYTVLISSCC---------RLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGL 597 (846)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 597 (846)
.+++|+.+|++.++.. +.+...|..+..++. ..+++++|...++++++.+ |.+..++..+..++...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 4577888888887763 223445555554443 2345889999999999875 6678888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHH
Q 003122 598 IAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS-IACSALMRAFNKGGQPSKVLLVAE 676 (846)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 676 (846)
+++|...|+++++.+ +.+...+..++..+...|++++|+..++++++ +.|+. ..+..++..+...|++++|+..++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999863 33477888999999999999999999999998 45653 233444556777899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCc
Q 003122 677 FMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS-GAEA 755 (846)
Q Consensus 677 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p 755 (846)
++++..++-+...+..++.++...|++++|...++++....|. ....++.++..|...| ++|...++++++. ...|
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 9987643335666788889999999999999999998877766 6667778888888888 4888888887662 1223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 756 NFNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 756 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
....+ +...|.-.|+.+.+..+ +++.+.
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 22222 55557777887777766 777654
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.2e-09 Score=104.30 Aligned_cols=295 Identities=11% Similarity=0.019 Sum_probs=224.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 522 YMNVGEYEKAIALYKCMKKRK-VMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAE 600 (846)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 600 (846)
++-.++...|..++-.+.... .+.|......+...+...|+.++|+..|++....+ +-+........-.+.+.|++++
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhh
Confidence 344555555555555444432 34466678889999999999999999999988753 2333333344445678899988
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003122 601 AESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMR 679 (846)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (846)
-..+-..+.... .-....|..-+......++++.|+.+-++.++ +.|+ ...+..-+..+...|+.++|.-.|+.++
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 888877776531 22344555555566677899999999999998 4444 4567667778899999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHH-HHHHh-cCCHHHHHHHHHHHHhcCCCcCH
Q 003122 680 EQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLL-HLLGK-SGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 680 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
...|- +..+|..++..|...|++.+|..+-.......+. +..++..++ .++.. ..--++|.+.+++.+. ++|+.
T Consensus 362 ~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y 437 (564)
T KOG1174|consen 362 MLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-SARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIY 437 (564)
T ss_pred hcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-chhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCcc
Confidence 86644 7889999999999999999998777665544444 445554553 34433 2356999999999999 99975
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHHhhccC
Q 003122 758 N-TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESLRMKSG 826 (846)
Q Consensus 758 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~~ 826 (846)
. +.+.++..+...|++++++.++++.+. ..||....+.+++++...+...+|...|.+...+.++.+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 5 788888899999999999999999986 689999999999999999999999999987777665543
No 75
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.43 E-value=1.7e-07 Score=98.56 Aligned_cols=541 Identities=16% Similarity=0.195 Sum_probs=297.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 168 RLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWR 247 (846)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 247 (846)
.-+.+.|+++.|..-|-+... ...-|.+-....+|.+|+.+++.+.... .-..-|..+.+.|...|+++
T Consensus 714 ~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHH
Confidence 334455666666665554432 1223455566778888888888887653 23345667778888888888
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 248 EALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMR 327 (846)
Q Consensus 248 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 327 (846)
.|.++|.+.- .++--|..|.+.|++++|.++-++... .......|..-..-+-+.|++.+|.+++-.+.
T Consensus 783 ~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 783 IAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred HHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 8888885432 345567888888888888888777653 24455667677777778888888888876553
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003122 328 EKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNI--VSYNALMAAYASHGMSKEALSVFNEIKKNGLCP 405 (846)
Q Consensus 328 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 405 (846)
. |+ .-|.+|-+.|..+..+++.++-- |+. .|...+..-|...|++..|..-|-+..+
T Consensus 852 ~------p~-----~aiqmydk~~~~ddmirlv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----- 910 (1636)
T KOG3616|consen 852 E------PD-----KAIQMYDKHGLDDDMIRLVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----- 910 (1636)
T ss_pred C------ch-----HHHHHHHhhCcchHHHHHHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh-----
Confidence 2 33 24567888888888887766532 222 2555666777778888888877655432
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHH--------------HCCCCcCHHH------HHHHHHHHHhCCCHHHHHHHH
Q 003122 406 DIVSYTSLLNAYGRSQQPVKAREVFNMMR--------------INNLKPNLVS------YSALIDAYGSNGLLAEAVEVF 465 (846)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--------------~~~~~~~~~~------~~~li~~~~~~g~~~~A~~~~ 465 (846)
|.+-+++|-..+-+++|.++-..-- ..|-..-+.. ...-|+..+.++.++-|+++-
T Consensus 911 ----~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdla 986 (1636)
T KOG3616|consen 911 ----FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLA 986 (1636)
T ss_pred ----HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHH
Confidence 4556677777777777765543210 0010000111 112234455666677777766
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHH-----HHHHHHhcC-CHHHHHHHHHHHh
Q 003122 466 REMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNS-----AIGSYMNVG-EYEKAIALYKCMK 539 (846)
Q Consensus 466 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g-~~~~A~~~~~~~~ 539 (846)
+-..+.. .+. +...+...+...|++++|.+.+-+.++.+.. | .+|-. .=.-+.+.| ++++|...|-.-.
T Consensus 987 ri~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaiklnty-n-itwcqavpsrfd~e~ir~gnkpe~av~mfi~dn 1061 (1636)
T KOG3616|consen 987 RIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNTY-N-ITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDN 1061 (1636)
T ss_pred HHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhcccc-c-chhhhcccchhhHHHHHcCCChHHHHHHhhhcc
Confidence 6555532 222 2334455567789999998888777665311 1 11111 011223444 4555555442110
Q ss_pred --------hCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Q 003122 540 --------KRKVMPDSV--TYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMM- 608 (846)
Q Consensus 540 --------~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 608 (846)
....-||.. .+.--.++-...|++.+|..++-.+. +|+.. ++-|...+-+.+|+++.+..
T Consensus 1062 dwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllran----kp~i~-----l~yf~e~~lw~dalri~kdyl 1132 (1636)
T KOG3616|consen 1062 DWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDIA-----LNYFIEAELWPDALRIAKDYL 1132 (1636)
T ss_pred cHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecC----CCchH-----HHHHHHhccChHHHHHHHhhC
Confidence 000112211 12223333445566666766654433 34432 23344555555555554321
Q ss_pred ---------------HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------------------CCCH
Q 003122 609 ---------------KMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNI---------------------EPDS 652 (846)
Q Consensus 609 ---------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---------------------~p~~ 652 (846)
.+.| ...+..+..-..-..+.|+|.+|...+-+.-.... .|+.
T Consensus 1133 p~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~ 1211 (1636)
T KOG3616|consen 1133 PHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDE 1211 (1636)
T ss_pred hhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCcc
Confidence 2222 12344455555556677888888777666532111 1110
Q ss_pred --HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc-----------
Q 003122 653 --IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV----------- 719 (846)
Q Consensus 653 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------- 719 (846)
....+.+.++...|.-+.|.+++-.. ......++++++..+|.+|.++.+.+.+....
T Consensus 1212 nme~i~aa~~al~~~~~~e~aael~l~f---------~~~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lk 1282 (1636)
T KOG3616|consen 1212 NMEVIGAAGGALDEAGCHEAAAELLLLF---------DLSKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLK 1282 (1636)
T ss_pred chhhHHhcchhhhcccccHHHHHHHHHh---------hhHHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHh
Confidence 11111222222333333333322111 01123456778888888888777665322111
Q ss_pred --------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 003122 720 --------VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKN-LLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 720 --------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~ 783 (846)
+++.+ .+-+..+...++|++|+....+ .+..|=..-|..+..+ +...|....|+.++.+-
T Consensus 1283 negkl~eli~vdv-iaaidl~ien~qwdk~idtak~---qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ 1351 (1636)
T KOG3616|consen 1283 NEGKLDELIDVDV-IAAIDLMIENDQWDKAIDTAKK---QNYKPILDKYVALYAAHLIHEGDLAQALALLEQH 1351 (1636)
T ss_pred ccCccccccchhH-HHHHHHHHhcccHHHHHHHHHh---cccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 11111 2445677788888888766543 3355655566655544 77888888888877653
No 76
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=8.9e-07 Score=96.65 Aligned_cols=589 Identities=14% Similarity=0.148 Sum_probs=284.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHH----HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNA----LISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLIN 238 (846)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 238 (846)
+..+.+.|.+.|-+..|++.|.++.+ ++..++.-+. -+-.|.-.-.++++++.+..|+..++..|..+..-+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~D--IKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYD--IKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHH--HHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 67788889999999999988877665 1122111111 01233444467889999999998888888877777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-----------CCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHH------------hCC
Q 003122 239 ACGSTGNWREALKVCKKMTEN-----------GVGPDLVTHNIVLSAYKNGAQYSKALSYFELMK------------GTN 295 (846)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~-----------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~------------~~~ 295 (846)
-|+..=-.+..+++|+..... ++.-|....-..|.+.|+.|++.+.+++.++-. +..
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 777665566667777666432 234455666677888888898888887766421 111
Q ss_pred CC---C-----ChHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC-----------H-HHHH------------H
Q 003122 296 IR---P-----DTTT-HNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPD-----------I-VTFT------------S 342 (846)
Q Consensus 296 ~~---~-----~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~-~~~~------------~ 342 (846)
.. | |..- ..-|+. |.-.++..+-++++-+-. ++.-.|- . ..-+ -
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvl-YLyrnn~~kyIE~yVQkv--Nps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~de 843 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVL-YLYRNNLQKYIEIYVQKV--NPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDE 843 (1666)
T ss_pred ccccCceEEEecccccHHHHHH-HHHHhhHHHHHHHHHhhc--CCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHH
Confidence 00 0 0000 011111 111122222222222111 1111110 0 1111 1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-H---HHHH------HHH-----------C
Q 003122 343 IIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEAL-S---VFNE------IKK-----------N 401 (846)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~---~~~~------m~~-----------~ 401 (846)
|+.-.-+.++..--...++..+..|. .|..++|+|...|...++-.+-. + .|+. ..+ .
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecc
Confidence 11222334444555555566666663 36666777776666554322210 0 0000 000 0
Q ss_pred CC--------CCCHhhHHHHHHHHHhcCChHHHHHH-----------HHHHHHCCC--CcCHHHHHHHHHHHHhCCCHHH
Q 003122 402 GL--------CPDIVSYTSLLNAYGRSQQPVKAREV-----------FNMMRINNL--KPNLVSYSALIDAYGSNGLLAE 460 (846)
Q Consensus 402 g~--------~p~~~~~~~ll~~~~~~g~~~~A~~~-----------~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~ 460 (846)
|. .-....|..+.+-+.+..+.+--.++ +++....++ ..|......-+.++...+-..+
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHH
Confidence 10 00111222233333333333222222 122222111 1122333334455555555555
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003122 461 AVEVFREMEQDGIE-PNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMK 539 (846)
Q Consensus 461 A~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 539 (846)
-++++++..-..-. ........|+-.-+-.-+.....+..+.+..-+. -.+......++-+++|..+|+..-
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa-------~~ia~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA-------PDIAEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc-------hhHHHHHhhhhHHHHHHHHHHHhc
Confidence 55555555432100 0111111111111111222222222222222110 011222334455666666665542
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003122 540 KRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVIT 619 (846)
Q Consensus 540 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 619 (846)
. +......|+. ..+..+.|.++-++. ....+|+.+..+-.+.|.+.+|++-|-+. .|+..
T Consensus 1076 ~-----n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~ 1135 (1666)
T KOG0985|consen 1076 M-----NVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSN 1135 (1666)
T ss_pred c-----cHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHH
Confidence 1 2333333332 234445554444432 23456777777777777777776665432 25666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 620 YTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL 699 (846)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 699 (846)
|...++...+.|.|++-.+++..+.+..-+|... ..|+-+|.+.++..+-.+++. .|+....-.+++-|..
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFE 1206 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhh
Confidence 7777777777777777777777666654444433 356666777776655444331 2345555556666666
Q ss_pred cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------cCCCc--
Q 003122 700 LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS----------------------SGAEA-- 755 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------~g~~p-- 755 (846)
.|.++.|.-+|.... -|..|+..+...|++..|....+++-. .|+.-
T Consensus 1207 ~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iiv 1277 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIV 1277 (1666)
T ss_pred hhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEE
Confidence 666666655554322 244555555555555555555444322 12221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHh
Q 003122 756 NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQT 804 (846)
Q Consensus 756 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 804 (846)
...-...|+.-|...|.++|-+.+++..+ |++. ..+++..++-.|.+
T Consensus 1278 hadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1278 HADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred ehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHh
Confidence 22234556666777788888877777654 3332 34455555555544
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=9.2e-11 Score=116.93 Aligned_cols=198 Identities=13% Similarity=0.044 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 582 NQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRA 661 (846)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 661 (846)
...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555666666666666666666665532 2235555666666666666666666666666532 2234455556666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 662 FNKGGQPSKVLLVAEFMREQDIT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
+...|++++|+..++++++.... .....+..++.++...|++++|...++++....|. +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666653211 12334445555555666666666666555554444 34455566666666666666
Q ss_pred HHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 741 MMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 741 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
|...++++++ ..| +...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQ--TYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666665 334 33344455555666666666666655554
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=1e-10 Score=116.64 Aligned_cols=200 Identities=11% Similarity=0.035 Sum_probs=168.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
...+..++..+...|++++|...++++++.. +.+...+..++..+...|++++|.+.++++++..+. +...+..++.+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 5678888999999999999999999998742 334678888999999999999999999999987655 66788889999
Q ss_pred HHhcCCHHHHHHHHHhhccCCC-ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHH
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFH-VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWR 774 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 774 (846)
+...|++++|++.++++..... ......+..++.++...|++++|...++++++ ..|+ ...+..++..+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999875432 22456788899999999999999999999999 7885 558889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 003122 775 KYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESL 821 (846)
Q Consensus 775 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l 821 (846)
+|...++++.+. ...++..+..+.......|+.+.+..+.+.+..+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999886 3334555666677778889999998888777654
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.41 E-value=2.6e-08 Score=104.44 Aligned_cols=363 Identities=15% Similarity=0.169 Sum_probs=176.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003122 307 IYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHG 386 (846)
Q Consensus 307 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 386 (846)
+.+.....++.+|+.+++.+.... .-...|..+.+.|...|+++.|.++|-+.- .++-.|.+|.+.|
T Consensus 739 ieaai~akew~kai~ildniqdqk----~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK----TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc----cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 344445566666676666665432 123456666777777777777777765432 3445566777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH------------------------
Q 003122 387 MSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNL------------------------ 442 (846)
Q Consensus 387 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~------------------------ 442 (846)
+++.|.++-++... .......|.+-..-+-+.|++.+|.+++-.+. .|+.
T Consensus 806 kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDKAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred cHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchHHHHHHHhhCcchHHHHHHHHhChh
Confidence 77777776655432 23334445555555555555555555443221 1221
Q ss_pred ---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------C
Q 003122 443 ---VSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMR------------D 507 (846)
Q Consensus 443 ---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------~ 507 (846)
.|...+..-|-..|++..|..-|-+... |...+++|...+-+++|.++-..--.. .
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKS 950 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHh
Confidence 1222233334444444444444333221 223333444444444443332110000 0
Q ss_pred CccCH--H------HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 003122 508 IKLNT--V------AYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIP 579 (846)
Q Consensus 508 ~~~~~--~------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 579 (846)
+..+. . ....-|+.-+.++.++-|..+-+-..+.. .|.. ...+...+-..|++++|-+.+-++++.+.
T Consensus 951 iggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyveaiklnt- 1026 (1636)
T KOG3616|consen 951 IGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYVEAIKLNT- 1026 (1636)
T ss_pred hCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhHHHhhccc-
Confidence 00000 0 00111222233344444444433333221 1221 22333345567888888888877776531
Q ss_pred CCHHHHHH-------------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 003122 580 LTNQVYSS-------------------VISAYSKQGLIAEAESMFNMMKMSGCSPD--VITYTAMLHAYNTAEDWEKACA 638 (846)
Q Consensus 580 ~~~~~~~~-------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 638 (846)
-..+|.. -+.++.+.+++..|.++-+.- .|+ ...|..-.......|++.+|..
T Consensus 1027 -ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h-----~~~~l~dv~tgqar~aiee~d~~kae~ 1100 (1636)
T KOG3616|consen 1027 -YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH-----CEDLLADVLTGQARGAIEEGDFLKAEG 1100 (1636)
T ss_pred -ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh-----ChhhhHHHHhhhhhccccccchhhhhh
Confidence 1111111 123444555555555544322 123 2344444555566777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH----------------HHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 639 LFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAE----------------FMREQDITFSDSIFFEMVLACSLLRD 702 (846)
Q Consensus 639 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~g~ 702 (846)
++-+.. +|+. .++.|...+.|..|+.+.+ ...+.|.. ....|..-+.-..++|+
T Consensus 1101 fllran----kp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gar-gvd~fvaqak~weq~gd 1170 (1636)
T KOG3616|consen 1101 FLLRAN----KPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGAR-GVDGFVAQAKEWEQAGD 1170 (1636)
T ss_pred heeecC----CCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcccc-ccHHHHHHHHHHHhccc
Confidence 665543 4553 2333445566666654433 22334433 45556666667788999
Q ss_pred HHHHHHHHHhhccCC
Q 003122 703 WKTTIDLIKQMEPSF 717 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~ 717 (846)
|.+|...+-++....
T Consensus 1171 ~rkav~~~lkinrds 1185 (1636)
T KOG3616|consen 1171 WRKAVDALLKINRDS 1185 (1636)
T ss_pred HHHHHHHHhhhccCC
Confidence 999999888875443
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=1.7e-10 Score=122.20 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C--CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVSSG----A--EAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAG--IQP-- 790 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p-- 790 (846)
..++++|+..|...|++++|.++|++++..- - .+. ...++.|+..|.+.+++++|.++|.+...-. +.|
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 3445555555555555555555555554310 0 111 1244444555555555554444444322110 111
Q ss_pred -C-HHhHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 003122 791 -S-YGMFRDIVSFAQTRGGAEYAAIIQERIESL 821 (846)
Q Consensus 791 -~-~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l 821 (846)
+ ..++.+|+..|...|+++.|.++.+++..+
T Consensus 447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred CchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 1 113455555555555555555555554443
No 81
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.7e-07 Score=99.91 Aligned_cols=136 Identities=16% Similarity=0.231 Sum_probs=97.0
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCC--------CCCHHHHHHHHHHHH
Q 003122 136 QRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQK-WRC--------KPDAETYNALISAHG 206 (846)
Q Consensus 136 ~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~--------~~~~~~~~~li~~~~ 206 (846)
-.|+.+.|.+-.+.++. ..+|..|.++|.+.++++-|.-.+-.|.. +|. .++ .+=......-.
T Consensus 740 tiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred EeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 34888988877777664 35899999999999999999887766654 221 121 22222333346
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHH
Q 003122 207 RAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALS 286 (846)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 286 (846)
..|.+++|+.+|.+..+ |..|=..|...|.+++|.++-+.--+.. =..||.....-+...++.+.|++
T Consensus 812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHH
Confidence 77999999999999887 5566677889999999999876533322 23456666666677788999998
Q ss_pred HHHHH
Q 003122 287 YFELM 291 (846)
Q Consensus 287 ~~~~m 291 (846)
.|++.
T Consensus 880 yyEK~ 884 (1416)
T KOG3617|consen 880 YYEKA 884 (1416)
T ss_pred HHHhc
Confidence 88864
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.6e-09 Score=109.08 Aligned_cols=219 Identities=17% Similarity=0.102 Sum_probs=127.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHH
Q 003122 551 TVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVIT-------YTAM 623 (846)
Q Consensus 551 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------~~~l 623 (846)
..+.++..+..++..|++.+...++.. .+..-++....+|...|.+.+++...+...+.|-. ...- +..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 344555555556666666666665543 33334445555566666666555555555443311 1111 1223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDW 703 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 703 (846)
+.+|.+.++++.|+..|.+.+.....||. ..+....++++...+...-.++.. ..-...-+..+...|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 33555566777777777776654333322 223344455555555444444432 22233446666777777
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 704 KTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGNWRKYIEVLQW 782 (846)
Q Consensus 704 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 782 (846)
..|+..|.++...+|. +...|.+.+.+|.+.|.+..|..-.+.+++ ++|+.. .|..=+.++....+|++|.+.|++
T Consensus 375 ~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777767766 667777777777777777777777777777 777544 666666667777777777777777
Q ss_pred HHH
Q 003122 783 MED 785 (846)
Q Consensus 783 ~~~ 785 (846)
.++
T Consensus 452 ale 454 (539)
T KOG0548|consen 452 ALE 454 (539)
T ss_pred HHh
Confidence 765
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=2.5e-10 Score=120.91 Aligned_cols=239 Identities=15% Similarity=0.091 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCC
Q 003122 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDL-----K-IPLTN-QVYSSVISAYSKQGLIAEAESMFNMMKM-----SGCS 614 (846)
Q Consensus 547 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~ 614 (846)
..+...+...|...|+++.|+.+++..++. | ..+.. ...+.+...|...+++++|..+|++++. .|-.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346667899999999999999999998864 2 12333 3344578899999999999999999986 2311
Q ss_pred -CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC---C
Q 003122 615 -PD-VITYTAMLHAYNTAEDWEKACALFLEMET-----NNIE-PD-SIACSALMRAFNKGGQPSKVLLVAEFMREQ---D 682 (846)
Q Consensus 615 -p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 682 (846)
|. ..+++.|..+|.+.|++++|..+++++.+ .|.. |+ ...++.++..|+..+++++|..++.+..+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 22 46788888899999999999999999875 1222 22 234667777899999999999999988762 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhhccCC----C---ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003122 683 ITFS----DSIFFEMVLACSLLRDWKTTIDLIKQMEPSF----H---VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS 751 (846)
Q Consensus 683 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 751 (846)
+.++ ..++..++..|...|++++|.++++++.... . ...-..++.|+..|.+.+++++|.++|.++...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3578899999999999999999999874321 1 112446789999999999999999999998652
Q ss_pred C--CCc---CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 752 G--AEA---NFN-TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 752 g--~~p---~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
. ..| +.. +|..|+..|..+|++++|+++.+.+..
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 223 433 899999999999999999999988764
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=7.9e-08 Score=103.66 Aligned_cols=258 Identities=12% Similarity=0.151 Sum_probs=125.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc--
Q 003122 273 SAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVN-- 350 (846)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 350 (846)
..+...|++++|++.++.-... +.............+.+.|+.++|..++..++..+|+ |...|..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd---n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD---NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHhhhcc
Confidence 3345556666666666554332 2223344445556666666666666666666665543 444455554444222
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHH
Q 003122 351 ---GQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSK-EALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKA 426 (846)
Q Consensus 351 ---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 426 (846)
...+....+++++...- |.......+.-.+.....+. .+...+..+...|+++ +++.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 23455555555554431 22222222211121111121 2334444455555432 344444444433333333
Q ss_pred HHHHHHHHHC--------------CCCcCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 003122 427 REVFNMMRIN--------------NLKPNLV--SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPN-IVSICTLLAACGR 489 (846)
Q Consensus 427 ~~~~~~m~~~--------------~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~ 489 (846)
..++...... .-+|... ++..+...|...|++++|++++++.++. .|+ +..|..-...+-.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 3344333221 0123332 3344556666677777777777777664 333 3445555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 003122 490 CGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRK 542 (846)
Q Consensus 490 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 542 (846)
.|++.+|...++.+...+ ..|...-+..+..+.++|++++|.+++......+
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 666666665555555543 2244444455555666666666666666655544
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=6.9e-10 Score=100.96 Aligned_cols=198 Identities=11% Similarity=0.026 Sum_probs=137.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLAC 697 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 697 (846)
+...|.-.|.+.|+...|..-+++.++ ..|+ ..+|..+...|.+.|..+.|.+.|+++++..+. +..+++..+..+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 344555666777777777777777776 3444 446666666677777777777777777766555 566666777777
Q ss_pred HhcCCHHHHHHHHHhhccC--CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHH
Q 003122 698 SLLRDWKTTIDLIKQMEPS--FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWR 774 (846)
Q Consensus 698 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 774 (846)
|..|++++|.+.|+++... .+. ...+|.+++.+-.+.|+.+.|...|+++++ +.|+ ..+...+....++.|++.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~-~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGE-PSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCC-cchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccch
Confidence 7777777777777766432 222 346677888888888888888888888888 8885 457778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q 003122 775 KYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESLRM 823 (846)
Q Consensus 775 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~ 823 (846)
.|..++++....|. +........+.+-...|+...+..+...|..+-+
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 88888888776543 5555555556666667777777777777766543
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.1e-07 Score=96.29 Aligned_cols=149 Identities=16% Similarity=0.107 Sum_probs=81.3
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003122 562 RYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN--------MMKMSGCSPDVITYTAMLHAYNTAEDW 633 (846)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (846)
.+.+|.+++...-+........+...++.....+|+++.|.+++. .+.+.+..|- +...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 456666666666554322224455556666666777777777776 4554433333 334455555555555
Q ss_pred HHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 634 EKACALFLEMETN--NIEPDSI----ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTI 707 (846)
Q Consensus 634 ~~A~~~~~~~~~~--g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 707 (846)
+-|..++.+.+.. .-.+... ++.-++..-.+.|+-++|..+++++.+.++. +......++.+|+.. +.+.|+
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHH
Confidence 5555555554420 0111112 2222333334557777777777777775544 666666666666655 466666
Q ss_pred HHHHhhc
Q 003122 708 DLIKQME 714 (846)
Q Consensus 708 ~~~~~~~ 714 (846)
.+-+.+.
T Consensus 512 ~l~k~L~ 518 (652)
T KOG2376|consen 512 SLSKKLP 518 (652)
T ss_pred HHhhcCC
Confidence 6666654
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.1e-08 Score=104.50 Aligned_cols=250 Identities=11% Similarity=0.035 Sum_probs=170.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH-------HHHH
Q 003122 515 YNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQ-------VYSS 587 (846)
Q Consensus 515 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~ 587 (846)
...+.++..+..+++.|++.+....+.. .+..-++....+|...|.+.+........++.|. -... .+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 3455666666777777777777777653 2333345555667777777777766666665442 1111 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC
Q 003122 588 VISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI-ACSALMRAFNKGG 666 (846)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g 666 (846)
++.+|.+.++++.|+..|++.+...-.|+. ..+....+++.+..+...- +.|+.. ....-+..+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 455777788999999999988764333332 2334556666666666554 445532 2223367788999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHH
Q 003122 667 QPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFF 746 (846)
Q Consensus 667 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 746 (846)
++..|+..|.+++..+|. |...|..-+.+|.+.|.+..|+.-.+...+.+|. .+..|..-+.++.-..+++.|.+.|.
T Consensus 373 dy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred CHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998866 7888999999999999999999998888888887 56667777888888899999999999
Q ss_pred HHHhcCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHH
Q 003122 747 KIVSSGAEANFNTY-SILLKNLLAAGNWRKYIEVLQW 782 (846)
Q Consensus 747 ~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 782 (846)
++++ .+|+..-+ ..+.+++..+.......++.++
T Consensus 451 eale--~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 451 EALE--LDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHh--cCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9999 88966533 3344444432223333444444
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=2e-09 Score=109.97 Aligned_cols=93 Identities=15% Similarity=0.036 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003122 550 YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYN 628 (846)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 628 (846)
|..+...+...|+.++|...|+++++.. |.+...|+.++..+...|++++|...|++.++. .|+ ..+|..++.++.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 4444444455555555555555555442 334445555555555555555555555555442 232 344444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003122 629 TAEDWEKACALFLEMET 645 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~ 645 (846)
..|++++|++.|++..+
T Consensus 144 ~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 55555555555555544
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=1.5e-09 Score=110.96 Aligned_cols=226 Identities=15% Similarity=0.062 Sum_probs=162.6
Q ss_pred cCCHhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 560 LSRYSEALGFLDEMMDLK-IPL--TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKA 636 (846)
Q Consensus 560 ~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (846)
.+..+.++..+.+++... ..| ....|..++..|...|+.++|...|++.++.. +.+...|+.++..+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 346677788888887532 112 24568888889999999999999999999863 33489999999999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 003122 637 CALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEP 715 (846)
Q Consensus 637 ~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 715 (846)
...|++.++ +.|+ ..+|..++.++...|++++|++.|++.++.++. +. ........+...++.++|+..+++...
T Consensus 118 ~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999998 5665 678888999999999999999999999997654 22 222223345567889999999976543
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---C--CCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 716 SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS---G--AEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 716 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
..+. + .|. ........|++.++ +.++.+.+. . +.|+ ..+|..++.+|.+.|++++|+..|+++.+.. .
T Consensus 194 ~~~~-~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~ 267 (296)
T PRK11189 194 KLDK-E--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-V 267 (296)
T ss_pred hCCc-c--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 3222 1 222 23333345655444 244444321 0 2332 3489999999999999999999999998742 2
Q ss_pred CCHHhHH
Q 003122 790 PSYGMFR 796 (846)
Q Consensus 790 p~~~~~~ 796 (846)
||...++
T Consensus 268 ~~~~e~~ 274 (296)
T PRK11189 268 YNFVEHR 274 (296)
T ss_pred chHHHHH
Confidence 3544433
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=6.9e-08 Score=104.10 Aligned_cols=292 Identities=14% Similarity=0.118 Sum_probs=185.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhc-
Q 003122 131 IKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYN-ALISAHGRA- 208 (846)
Q Consensus 131 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~- 208 (846)
...+...|++++|++.++.-.+.- ......+......+.+.|+.++|..+|..+.+++ |+...|. .+..++.-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 445567799999999987654432 3445567778889999999999999999998865 5555544 444444222
Q ss_pred ----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHH
Q 003122 209 ----GQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWR-EALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSK 283 (846)
Q Consensus 209 ----g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~-~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 283 (846)
...+....+|+++...- |...+...+.-.+.....+. .+...+..+...|++ .+|+.|-..|.......-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 25677788888876653 33333333322222222333 344556666677764 345566666665555555
Q ss_pred HHHHHHHHHhC----C----------CCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 003122 284 ALSYFELMKGT----N----------IRPDT--TTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLY 347 (846)
Q Consensus 284 A~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~ 347 (846)
..+++...... + -.|.. .++..+...|...|++++|++.+++.++..|. .+..|..-...+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt---~~ely~~Karil 238 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT---LVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHH
Confidence 55666555422 1 12233 24456677777888888888888888876554 466777778888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--------hHHHHHHHHHh
Q 003122 348 SVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIV--------SYTSLLNAYGR 419 (846)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------~~~~ll~~~~~ 419 (846)
-..|++++|.+.++...... ..|...-+..+..+.+.|++++|.+++....+.+..|... .......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887764 2355566666777778888888888888777655432211 11334556777
Q ss_pred cCChHHHHHHHHHHHH
Q 003122 420 SQQPVKAREVFNMMRI 435 (846)
Q Consensus 420 ~g~~~~A~~~~~~m~~ 435 (846)
.|++..|++-|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 7777777766655543
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=2.9e-09 Score=97.03 Aligned_cols=203 Identities=11% Similarity=-0.029 Sum_probs=113.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 550 YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT 629 (846)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (846)
...|.-+|...|+...|..-++++++.. |.+..++..+...|.+.|..+.|.+.|++.+... +-+-.+.|..+..+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3344555666666666666666666643 4445566666666666666666666666666532 1234556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 630 AEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTID 708 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 708 (846)
.|++++|...|++++....-+. ..+|..++-+..+.|+.+.|.+.|++.++.++. .+.....+.......|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 6666666666666665321111 345666666666666666666666666665544 34444555555555566666655
Q ss_pred HHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 709 LIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
++++.....+ .+...+-..+..-...|+.+.|-++=.++.. ..|...
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~ 241 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSE 241 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcH
Confidence 5555544444 2334443444444455555555555555544 455443
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=5.2e-07 Score=93.46 Aligned_cols=456 Identities=13% Similarity=0.094 Sum_probs=225.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc
Q 003122 271 VLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVN 350 (846)
Q Consensus 271 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 350 (846)
=++.+...|++++|.+...++...+ +.+...+..-+-++.+.+++++|+.+.+.-.... .+.+.+.--+.+..+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~----~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL----VINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh----hcchhhHHHHHHHHHc
Confidence 3556678889999999999998876 5566777777888889999999997665443210 1111112223445578
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCChHHHHH
Q 003122 351 GQIENCKGVFNTMLAEGLKPN-IVSYNALMAAYASHGMSKEALSVFNEIKKNGLCP-DIVSYTSLLNAYGRSQQPVKARE 428 (846)
Q Consensus 351 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~ 428 (846)
++.++|+..++. ..++ ..+...-...+.+.|++++|..+|+.+.+++..- |...-..++.. +-.-.+.
T Consensus 93 nk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~- 162 (652)
T KOG2376|consen 93 NKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ- 162 (652)
T ss_pred ccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-
Confidence 899999988872 2333 3355555667788999999999999998875431 11111112111 1111111
Q ss_pred HHHHHHHCCCCcC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003122 429 VFNMMRINNLKPN--LVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMR 506 (846)
Q Consensus 429 ~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 506 (846)
+.+... ..|+ -..+......+...|++.+|+++++...+.+... +. .++.. -+.+-.++
T Consensus 163 ~~q~v~---~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-----------l~-~~d~~-eEeie~el--- 223 (652)
T KOG2376|consen 163 LLQSVP---EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK-----------LE-DEDTN-EEEIEEEL--- 223 (652)
T ss_pred HHHhcc---CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-----------hc-ccccc-hhhHHHHH---
Confidence 122222 1221 1222223445677899999999998884422100 00 00000 00000000
Q ss_pred CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH----HHHHHHHHhcCCHhH--HHHHHHHHHH-----
Q 003122 507 DIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTY----TVLISSCCRLSRYSE--ALGFLDEMMD----- 575 (846)
Q Consensus 507 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----~~li~~~~~~g~~~~--A~~~~~~~~~----- 575 (846)
+ .+-..|.-.+...|+-++|..+|...++.. .+|.... |.|+. ...-.++-. ++..++....
T Consensus 224 ----~-~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~ 296 (652)
T KOG2376|consen 224 ----N-PIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEF 296 (652)
T ss_pred ----H-HHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHH
Confidence 0 011123334445566666666665555543 2232211 11111 111111110 1111111100
Q ss_pred ------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HH-HhcCCHHHHHHHHHHHHHCC
Q 003122 576 ------LKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLH-AY-NTAEDWEKACALFLEMETNN 647 (846)
Q Consensus 576 ------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~-~~~g~~~~A~~~~~~~~~~g 647 (846)
..-.-....-+.++..| .+.-+.+.++...... ..|.. .+..++. ++ ++.....+|.+++...-+.
T Consensus 297 ~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~- 370 (652)
T KOG2376|consen 297 LLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADG- 370 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhcc-
Confidence 00000001111222222 2223333333333222 12222 2222222 22 2222466666666666553
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Q 003122 648 IEPD--SIACSALMRAFNKGGQPSKVLLVAE--------FMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQM---- 713 (846)
Q Consensus 648 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 713 (846)
.|+ ..+...++......|+++.|++++. ...+.+.. +.+...+...+.+.++-+-|.+++.++
T Consensus 371 -~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 371 -HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred -CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 333 2344445555666777777777777 44443333 333444555555555544444444332
Q ss_pred ---ccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 714 ---EPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 714 ---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 780 (846)
....+. -...+..++..-.++|+.++|...++++++ ..| |..+...++.+|+... .++|..+=
T Consensus 448 ~~~~t~s~~-l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~d-~eka~~l~ 514 (652)
T KOG2376|consen 448 RKQQTGSIA-LLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARLD-PEKAESLS 514 (652)
T ss_pred HHhcccchH-HHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhcC-HHHHHHHh
Confidence 222211 123344555555677999999999999998 777 5558888888888764 45565443
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.27 E-value=3.1e-08 Score=95.07 Aligned_cols=191 Identities=10% Similarity=0.067 Sum_probs=116.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 555 SSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWE 634 (846)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 634 (846)
..+...|+...|+.+...+++.. +.+...|..-..+|...|++..|+.-++...+.. ..+..+..-+...+...|+.+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHH
Confidence 34556788888888888888864 6788888888889999999999988888777642 345667777777888889988
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH-------------HHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q 003122 635 KACALFLEMETNNIEPDSIACSAL-------------MRAFNKGGQPSKVLLVAEFMREQDITFSD---SIFFEMVLACS 698 (846)
Q Consensus 635 ~A~~~~~~~~~~g~~p~~~~~~~l-------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 698 (846)
.++...++.++ +.||...+... +......++|-++++..++.++..+.... ..+..+-.++.
T Consensus 241 ~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 241 NSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 88888888887 67775433221 11122344455555555555544332111 11222223344
Q ss_pred hcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 699 LLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
..|++-+|++...++....|. ++.++-.-+.+|.-...++.|+.-|+++.+
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 445555555555555544444 444444455555555555555555555555
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=8.2e-10 Score=113.66 Aligned_cols=243 Identities=11% Similarity=0.086 Sum_probs=175.9
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 003122 556 SCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSP-DVITYTAMLHAYNTAEDWE 634 (846)
Q Consensus 556 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 634 (846)
-+.+.|++.+|.-.|+..++.+ |-+...|..|+......++-..|+..+++.++. .| |......|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHH
Confidence 3456677777777777777764 566777777777777777777777777777774 34 3667777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-----------HHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCC
Q 003122 635 KACALFLEMETNNIEPDSIACSALMR-----------AFNKGGQPSKVLLVAEFMR-EQDITFSDSIFFEMVLACSLLRD 702 (846)
Q Consensus 635 ~A~~~~~~~~~~g~~p~~~~~~~l~~-----------~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~ 702 (846)
+|+++++.-+... |. |..+.. .+..........++|-.+. ..+..+|+.+...++-+|...|+
T Consensus 371 ~Al~~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 7888777776521 11 111111 1111112233344555444 44545789999999999999999
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 003122 703 WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
+++|++.|+.+....|. +..+||.|+..++...+.++|+..|.++++ +.|+.+ +.+.|+-.|...|.|+||.+.|=
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999999998 889999999999999999999999999999 999866 88899999999999999999887
Q ss_pred HHHHCCCC---------CCHHhHHHHHHHHHhcCCcc
Q 003122 782 WMEDAGIQ---------PSYGMFRDIVSFAQTRGGAE 809 (846)
Q Consensus 782 ~~~~~g~~---------p~~~~~~~l~~~~~~~~~~~ 809 (846)
.++..--+ ++..++..|-.++...+..+
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 76542111 12235555555555545444
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.16 E-value=1.2e-07 Score=91.07 Aligned_cols=309 Identities=10% Similarity=0.016 Sum_probs=213.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH-HHH
Q 003122 476 NIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYT-VLI 554 (846)
Q Consensus 476 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~li 554 (846)
++.-..-+...+...|++.+|..-|..+++.+ +.+-.++-.-...|...|+-..|+.-+...++. +||-..-. .-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 44455566777888888888888888888763 223334444466788888888888888888876 67754322 233
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCC--CHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003122 555 SSCCRLSRYSEALGFLDEMMDLKIPL--TNQVYS------------SVISAYSKQGLIAEAESMFNMMKMSGCSPDVITY 620 (846)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 620 (846)
..+.+.|.+++|..-|+.+++..... ...++. ..+..+...|+...|+.....+++.. +-|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 45678899999999999988764211 111221 12334556788888888888888742 2356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHH------
Q 003122 621 TAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITF--SDSIFFE------ 692 (846)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~------ 692 (846)
..-..+|...|....|+.-++...+.. .-+..++.-+...+...|+.+.++...++.++.+++- .-..|-.
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHH
Confidence 777888888888888888777776631 2345566677777888899888888888888865431 1111111
Q ss_pred ---HHHHHHhcCCHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHH
Q 003122 693 ---MVLACSLLRDWKTTIDLIKQMEPSFHVVS---IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLK 765 (846)
Q Consensus 693 ---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 765 (846)
-+......++|-++++..++....+|... ...+..+-.++...|++.+|++.-.++++ ..|| ..++..-+.
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHH
Confidence 11234466778888888888776766632 33344556667777899999999999988 8885 558888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 766 NLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 766 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
+|.....|++|+.-|+++.+ +.++..
T Consensus 350 A~l~dE~YD~AI~dye~A~e--~n~sn~ 375 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALE--LNESNT 375 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHh--cCcccH
Confidence 88888889999999998887 445443
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.8e-07 Score=88.16 Aligned_cols=431 Identities=15% Similarity=0.126 Sum_probs=251.9
Q ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHH-H
Q 003122 265 LVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTS-I 343 (846)
Q Consensus 265 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-l 343 (846)
..-+.+.+..+.+..++++|++++....++. +.+......+..+|....++..|-+.++++-... |...-|.. -
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~----P~~~qYrlY~ 84 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH----PELEQYRLYQ 84 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----hHHHHHHHHH
Confidence 3345666666777888888888888877764 2367778888899999999999999999887643 33333322 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 003122 344 IHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALM--AAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQ 421 (846)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 421 (846)
...+.+.+.+.+|+++...|.+. ++...-..-+ ......+++..+..++++....| +..+.+...-...+.|
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence 45667888999999998888652 2322211112 22345688888888888876432 4455555555667899
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHH
Q 003122 422 QPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVS----ICTLLAACGRCGRKVNID 497 (846)
Q Consensus 422 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~----~~~ll~~~~~~g~~~~a~ 497 (846)
+++.|.+-|+...+-+--.....||.-+ +..+.|+++.|+++..++++.|++..+.. ..-.+++ ..+..-.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv----rsvgNt~ 233 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV----RSVGNTL 233 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch----hcccchH
Confidence 9999999999888765455567777555 45577999999999999998875432110 0000000 0000000
Q ss_pred HHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003122 498 AVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKR-KVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL 576 (846)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 576 (846)
.+.... -+.++|.-...+.+.|+++.|.+.+.+|--+ ....|.+|...+.-.- ..+++-+..+-+.-++..
T Consensus 234 ~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 234 VLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred HHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc
Confidence 000000 1234555555677889999999988888543 1234667765543221 234555566666666665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003122 577 KIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCS-PDVITYTAMLHAYN-TAEDWEKACALFLEMETNNIEPDSIA 654 (846)
Q Consensus 577 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~~~~ 654 (846)
+ |-...||..++-.||+..-++-|-.++-+-....+. .+...|+ |++++. ..-..++|.+-++.+...
T Consensus 306 n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~-------- 375 (459)
T KOG4340|consen 306 N-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGM-------- 375 (459)
T ss_pred C-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHH--------
Confidence 4 456678888888899998888887776543221100 1122222 223322 233555665555444321
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK 734 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 734 (846)
+..-+ ..-|+++-+ ....+ +.......+ .+++++++.+- .+..+.++.|+.
T Consensus 376 ---l~~kL-----RklAi~vQe-~r~~~---dd~a~R~ai------~~Yd~~LE~YL-----------PVlMa~AkiyW~ 426 (459)
T KOG4340|consen 376 ---LTEKL-----RKLAIQVQE-ARHNR---DDEAIRKAV------NEYDETLEKYL-----------PVLMAQAKIYWN 426 (459)
T ss_pred ---HHHHH-----HHHHHHHHH-HHhcc---cHHHHHHHH------HHHHHHHHHHH-----------HHHHHHHHhhcc
Confidence 00000 011122111 11111 222222221 23444544442 234577788888
Q ss_pred cCCHHHHHHHHHHHHhcCCCcCHHHH
Q 003122 735 SGRIESMMKLFFKIVSSGAEANFNTY 760 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p~~~~~ 760 (846)
..++..+++.|.+..+ .-.+..+|
T Consensus 427 ~~Dy~~vEk~Fr~Sve--fC~ehd~W 450 (459)
T KOG4340|consen 427 LEDYPMVEKIFRKSVE--FCNDHDVW 450 (459)
T ss_pred ccccHHHHHHHHHHHh--hhccccee
Confidence 8999999999998888 44444444
No 97
>PF13041 PPR_2: PPR repeat family
Probab=99.11 E-value=2.3e-10 Score=81.13 Aligned_cols=49 Identities=41% Similarity=0.662 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003122 193 PDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACG 241 (846)
Q Consensus 193 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 241 (846)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444555555555555555555555555555555555555555554444
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=5.1e-07 Score=96.30 Aligned_cols=262 Identities=12% Similarity=0.004 Sum_probs=143.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 521 SYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCR----LSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG 596 (846)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 596 (846)
.+...|++++|.+.+++..+.. +.|...+.. ...+.. .+..+.+.+.+... ....+........+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcC
Confidence 3445677777777777766652 223333331 112222 33444444444331 1112233344445666777778
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCChhHHHH
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNI-EPDS--IACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~--~~~~~l~~~~~~~g~~~~A~~ 673 (846)
++++|...+++..+.. +.+...+..+..++...|++++|..++++.....- .|+. ..|..+...+...|++++|+.
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888777753 33456667777777778888888888777776321 1222 234466677777888888888
Q ss_pred HHHHHHHCCCCCC-HHHH-H--HHHHHHHhcCCHHHHHHH---HHhhccCCC-ccchhhHHHHHHHHHhcCCHHHHHHHH
Q 003122 674 VAEFMREQDITFS-DSIF-F--EMVLACSLLRDWKTTIDL---IKQMEPSFH-VVSIGLLNQLLHLLGKSGRIESMMKLF 745 (846)
Q Consensus 674 ~~~~~~~~~~~~~-~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 745 (846)
+++++....+... .... . .+...+...|....+.++ ........+ ..........+.++...|+.++|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8887764332111 1111 1 222333344433222222 111111111 111122235666777888899999988
Q ss_pred HHHHhcCCC-------c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 746 FKIVSSGAE-------A-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 746 ~~~~~~g~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
+.+...... . ........+.++...|++++|++.+..+.+.
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 887653221 1 1224444455688999999999999888653
No 99
>PF13041 PPR_2: PPR repeat family
Probab=99.09 E-value=3.1e-10 Score=80.40 Aligned_cols=49 Identities=39% Similarity=0.628 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 003122 228 PSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYK 276 (846)
Q Consensus 228 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 276 (846)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4445555555555555555555555555555555555555555555544
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=2.3e-08 Score=103.18 Aligned_cols=247 Identities=14% Similarity=0.098 Sum_probs=157.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 522 YMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEA 601 (846)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 601 (846)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+.++.. |.+..+...|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 345555555555555555543 2244455555555555555556666666666553 44555555666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003122 602 ESMFNMMKMSGCSPDVITYTAML---------HAYNTAEDWEKACALFLEME-TNNIEPDSIACSALMRAFNKGGQPSKV 671 (846)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~A 671 (846)
...++..+... |.. .|.... ..+..........++|-++. ..+..+|+.+...|.-.|.-.|.+++|
T Consensus 373 l~~L~~Wi~~~--p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 373 LKMLDKWIRNK--PKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHhC--ccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 66666554421 100 000000 01111122333444555544 344446777777888888888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS 751 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 751 (846)
+..|+.++...|. |...|+.++..+....+.++|+..|.++.+..|. -+.++.+|+-.|...|.+++|...|-.++.
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~- 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS- 526 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH-
Confidence 9999999887666 7788889999999888999999999999888887 667888999999999999999999998876
Q ss_pred CCCcC-----------HHHHHHHHHHHHhcCCHHHHH
Q 003122 752 GAEAN-----------FNTYSILLKNLLAAGNWRKYI 777 (846)
Q Consensus 752 g~~p~-----------~~~~~~l~~~~~~~g~~~~A~ 777 (846)
+.+. ..+|..|-.++...++.+-+.
T Consensus 527 -mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 527 -MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred -hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 3221 236666665566666655443
No 101
>PLN02789 farnesyltranstransferase
Probab=99.03 E-value=1.8e-07 Score=95.18 Aligned_cols=204 Identities=11% Similarity=0.027 Sum_probs=133.9
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--HH
Q 003122 559 RLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG-LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDW--EK 635 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~ 635 (846)
..++.++|+....++++.+ |.+..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 3456777777777777754 445556666666666666 5677888887777653 33456677666666555552 56
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHHHH
Q 003122 636 ACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL---RD----WKTTID 708 (846)
Q Consensus 636 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~ 708 (846)
++.+++++++.. +-|..+|.....++.+.|++++|++.++++++.++. +..+|+..+.++... |. .+++++
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 777777777632 234667777777777778888888888888877666 566666666655443 22 245666
Q ss_pred HHHhhccCCCccchhhHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHh
Q 003122 709 LIKQMEPSFHVVSIGLLNQLLHLLGKS----GRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLA 769 (846)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~ 769 (846)
+.+++....|. +..+|+.+..++... ++..+|...+.++++ ..|+ ......|++.|+.
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence 66666666666 667777777777663 344567777777766 5663 4466667777665
No 102
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=1.2e-08 Score=107.85 Aligned_cols=261 Identities=14% Similarity=0.077 Sum_probs=195.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003122 544 MPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAM 623 (846)
Q Consensus 544 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 623 (846)
+|--..-..+...+.+.|-..+|..++++. ..|...+.+|+..|+..+|..+..+-+++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 444444456677788888899998888764 37888888899999999999888887774 6888889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDW 703 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 703 (846)
++......-+++|.++.+..... +-..+.......++++++.+.|+...+.++- ...+|+..+.++.+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhh
Confidence 98888888888888888776542 2222333344578999999999998886654 678888889899999999
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 704 KTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 704 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
+.|.+.|.......|. ....||++..+|.+.|+..+|...+.++++.. .-+...|.+......+.|.|++|++.++++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999998888887 78899999999999999999999999999843 224557777777888999999999999988
Q ss_pred HHCCCC-CCHHhHHHHHHHHHh---cCCcchHHHHHHHHHHHhhcc
Q 003122 784 EDAGIQ-PSYGMFRDIVSFAQT---RGGAEYAAIIQERIESLRMKS 825 (846)
Q Consensus 784 ~~~g~~-p~~~~~~~l~~~~~~---~~~~~~a~~~~~~l~~l~~~~ 825 (846)
.+.... .|+.....+...... ++..+++...+....++..+.
T Consensus 614 l~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~ 659 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKV 659 (777)
T ss_pred HHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHH
Confidence 764322 244443333322222 455667777776666555443
No 103
>PLN02789 farnesyltranstransferase
Probab=99.02 E-value=1.7e-07 Score=95.38 Aligned_cols=204 Identities=12% Similarity=0.062 Sum_probs=162.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-
Q 003122 592 YSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAE-DWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQP- 668 (846)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~- 668 (846)
+...++.++|+.++.++++. .|+ ..+|+....++...| ++++++..++++++.. +.+..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 34457889999999999985 454 678888888888777 6899999999999842 33456788777777777764
Q ss_pred -hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc---CC----HHH
Q 003122 669 -SKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS---GR----IES 740 (846)
Q Consensus 669 -~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~ 740 (846)
++++.+++++++.+++ +..+|...+.++...|+++++++.++++.+.++. +..+|+..+.++.+. |. .++
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 7789999999998877 8899999999999999999999999999998888 778999998888765 32 357
Q ss_pred HHHHHHHHHhcCCCc-CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHh
Q 003122 741 MMKLFFKIVSSGAEA-NFNTYSILLKNLLA----AGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQT 804 (846)
Q Consensus 741 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 804 (846)
+..+..+++. +.| |..+|+.+..+|.. .++..+|.+.+.++... .| +.....-+++.+..
T Consensus 202 el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHHh
Confidence 8888889999 999 55699999999888 35567798888887663 34 34456666666654
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.02 E-value=1.6e-06 Score=105.04 Aligned_cols=302 Identities=11% Similarity=-0.030 Sum_probs=189.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC------ccC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHH
Q 003122 486 ACGRCGRKVNIDAVLLAAEMRDI------KLN--TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDS----VTYTVL 553 (846)
Q Consensus 486 ~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l 553 (846)
.+...|+.+++...+..+...-. .+. ......+...+...|++++|...+++....-...+. .....+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 34455666666666655433200 001 111222334556788899998888887653111121 234455
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHH
Q 003122 554 ISSCCRLSRYSEALGFLDEMMDLKI---PL--TNQVYSSVISAYSKQGLIAEAESMFNMMKMS----GCS--P-DVITYT 621 (846)
Q Consensus 554 i~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--p-~~~~~~ 621 (846)
...+...|++++|...+.++..... .+ ...++..+...+...|++++|...+++.... +.. + ....+.
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 5667788999999998888774211 11 1234556677788899999999988877652 211 1 123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHH-----H
Q 003122 622 AMLHAYNTAEDWEKACALFLEMETN--NIEPD--SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFS-DSIF-----F 691 (846)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-----~ 691 (846)
.+...+...|++++|...+++.... ...+. ...+..+...+...|++++|...++++........ ...+ .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 5666777789999999998887652 11122 33455566678889999999999888865311111 1111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCcC-HHHHHHH
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFHVVS---IGLLNQLLHLLGKSGRIESMMKLFFKIVSS----GAEAN-FNTYSIL 763 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l 763 (846)
.....+...|+.+.|.+++........... ...+..++.++...|+.++|...+++++.. |..++ ..++..+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 122345568899999999877654322211 122457788888999999999999998763 12222 2366777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 003122 764 LKNLLAAGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~~~g 787 (846)
+.+|...|+.++|...+.++.+..
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888999999999999999998753
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=2.2e-06 Score=91.37 Aligned_cols=306 Identities=12% Similarity=0.011 Sum_probs=155.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CcCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 408 VSYTSLLNAYGRSQQPVKAREVFNMMRINNL-KPNL-VSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLA 485 (846)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 485 (846)
..|..+...+...|+.+.+...+........ ..+. .........+...|++++|.+++++..+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 4456666666667777776666655543321 1121 112222334556777777777777776642 222222211 11
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHh
Q 003122 486 ACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPD-SVTYTVLISSCCRLSRYS 564 (846)
Q Consensus 486 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 564 (846)
.+...| ...+..+.+.+.+..... ..|+ ......+...+...|+++
T Consensus 85 ~~~~~~-------------------------------~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 85 GAFGLG-------------------------------DFSGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred HHHHhc-------------------------------ccccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHH
Confidence 111111 112333333333333111 1222 233344555666677777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 565 EALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGC-SPD--VITYTAMLHAYNTAEDWEKACALFL 641 (846)
Q Consensus 565 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (846)
+|...+++.++.. +.+...+..+..+|...|++++|...+++...... .++ ...|..+...+...|++++|+.+++
T Consensus 132 ~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 132 RAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777654 44455666667777777777777777776665321 122 2234566666777777777777777
Q ss_pred HHHHCCCCCC-HHHH-H--HHHHHHHhcCChhHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003122 642 EMETNNIEPD-SIAC-S--ALMRAFNKGGQPSKVLLVAEFMRE----QDI-TFSDSIFFEMVLACSLLRDWKTTIDLIKQ 712 (846)
Q Consensus 642 ~~~~~g~~p~-~~~~-~--~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 712 (846)
++......+. .... + .++..+...|..+.+..+ +.+.. ... ..........+.++...|+.++|..+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 211 THIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 7654211111 1111 1 223333344433333222 11111 100 00111122455566777778888777776
Q ss_pred hccCCCc--------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 713 MEPSFHV--------VSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 713 ~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+...... ..+.+....+.++...|+.++|.+.+..++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6432111 1233444556667789999999999999887
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=4.6e-08 Score=103.59 Aligned_cols=220 Identities=10% Similarity=0.054 Sum_probs=178.6
Q ss_pred ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 509 KLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSV 588 (846)
Q Consensus 509 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 588 (846)
+|--..-..+...+...|-...|+.+|+++ ..|..+|.+|+..|+..+|..+..+-++ -+|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 444444556778888999999999988865 3577888899999999999999988887 37899999998
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003122 589 ISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQ 667 (846)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 667 (846)
++.....--+++|.++++..... .-..+.......++++++.+.|+...+ +.| -..+|..+..+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhh
Confidence 88887777788888888765432 222333333457899999999999887 334 35688888888999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFK 747 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 747 (846)
++.|.+.|...+...|. +...|+.+..+|.+.++..+|...++++.+.+.. +..+|-+......+.|.+++|++++.+
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999999987766 7889999999999999999999999999888744 788899999999999999999999999
Q ss_pred HHh
Q 003122 748 IVS 750 (846)
Q Consensus 748 ~~~ 750 (846)
+++
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 886
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2.9e-06 Score=80.29 Aligned_cols=194 Identities=13% Similarity=0.153 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHH
Q 003122 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNN-LINACG 241 (846)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-ll~~~~ 241 (846)
+++.+..+.+..++++|++++..-.++. +.+......|..+|.+..++..|-..|+++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4555555566666666666666555533 224555556666666666666666666666543 233333332 234445
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH--HHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHH
Q 003122 242 STGNWREALKVCKKMTENGVGPDLVTHNIVLS--AYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKA 319 (846)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 319 (846)
+.+.+..|+++...|... ++...-..-+. .....+++..+..+.++.... .+..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 566666666666655542 11111111111 123345555555555554432 2344444444445555555555
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003122 320 IDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGL 368 (846)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 368 (846)
.+-|+...+.+ +.. ...+|+.-+ +..+.|+++.|++...+++++|+
T Consensus 164 vqkFqaAlqvs-Gyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 164 VQKFQAALQVS-GYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHHHHHhhc-CCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhh
Confidence 55555555432 111 233444332 22344555555555555555554
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=4.7e-08 Score=98.21 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=84.5
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCC
Q 003122 556 SCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITY---TAMLHAYNTAED 632 (846)
Q Consensus 556 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~ 632 (846)
.+...|++++|++++.+. .+.......+.+|.+.++++.|.+.++.|.+. ..|.... .+.+..+.-.+.
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCchh
Confidence 344556666666665431 34555556666666777777777777666653 2332211 122222222235
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 003122 633 WEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDW-KTTIDLIK 711 (846)
Q Consensus 633 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 711 (846)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|.++++++++.++. ++.++..++-+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 66777777776543 4456666666666667777777777777766665544 455555566555666665 45556666
Q ss_pred hhccCCCc
Q 003122 712 QMEPSFHV 719 (846)
Q Consensus 712 ~~~~~~~~ 719 (846)
++....|.
T Consensus 261 qL~~~~p~ 268 (290)
T PF04733_consen 261 QLKQSNPN 268 (290)
T ss_dssp HCHHHTTT
T ss_pred HHHHhCCC
Confidence 66555554
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.93 E-value=0.00012 Score=75.71 Aligned_cols=212 Identities=12% Similarity=0.059 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003122 598 IAEAESMFNMMKMSGCSPDVITYTAMLHAYNTA---EDWEKACALFLEMETN-NIEPDSIACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~ 673 (846)
-++|..+++.....-..-+..+|..+.+---.. ...+.....++++... .+.|+ .+|..++..-.+..-.+.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 355566666555422122334444444322111 1356666777777652 23343 367777777777777899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 753 (846)
+|.++.+.+..+......+..--|.-+++.+.|..+|+.-....+. ++..-...+..+...++=+.|+.+|++++.+++
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998665542222223333455678889999999988777776 555556777778888988999999999999877
Q ss_pred CcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHhHHHHHHHHHhcCCcchHH
Q 003122 754 EANF--NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ----PSYGMFRDIVSFAQTRGGAEYAA 812 (846)
Q Consensus 754 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~----p~~~~~~~l~~~~~~~~~~~~a~ 812 (846)
.||- ..|..++.-=.+.|+...++++=+++... ++ +.-..-..+.+.+.-.+..+...
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a-f~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA-FPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-cchhhcCCCChHHHHHHHHhhcccccccH
Confidence 7753 48999999888999999988887777653 32 11122334444444445444333
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.91 E-value=1.4e-07 Score=89.42 Aligned_cols=152 Identities=14% Similarity=0.164 Sum_probs=116.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 625 HAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWK 704 (846)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 704 (846)
..|...|+++.+....+++.. |. ..+...++.++++..+++.++.++. +...|..++.+|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHH
Confidence 457778887776544433321 11 0122366778888888888887766 7888888899999999999
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 705 TTIDLIKQMEPSFHVVSIGLLNQLLHLL-GKSGR--IESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 705 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 780 (846)
+|+..++++....|. +..++..++.++ ...|+ .++|.++++++++ ..| +..++..++..+.+.|++++|+..|
T Consensus 91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999998888887 778888888874 67676 5999999999999 889 5568888889999999999999999
Q ss_pred HHHHHCCCCCCHH
Q 003122 781 QWMEDAGIQPSYG 793 (846)
Q Consensus 781 ~~~~~~g~~p~~~ 793 (846)
+++.+. ..|+..
T Consensus 168 ~~aL~l-~~~~~~ 179 (198)
T PRK10370 168 QKVLDL-NSPRVN 179 (198)
T ss_pred HHHHhh-CCCCcc
Confidence 999875 344443
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=1.6e-07 Score=93.39 Aligned_cols=183 Identities=11% Similarity=0.003 Sum_probs=128.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---
Q 003122 579 PLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD----VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD--- 651 (846)
Q Consensus 579 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--- 651 (846)
......+..++..+...|++++|...|+++... .|+ ..++..++.++...|++++|+..++++++. .|+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~ 105 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPD 105 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCc
Confidence 345667778888888899999999999888875 233 246777888888889999999999998873 343
Q ss_pred -HHHHHHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccch
Q 003122 652 -SIACSALMRAFNKG--------GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSI 722 (846)
Q Consensus 652 -~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 722 (846)
..++..+..++... |++++|++.++++++..+. +......+..... ..... .
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~--------------~ 166 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRL--------------A 166 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHH--------------H
Confidence 12456666666654 6788888888888876554 2222211111100 00000 0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN----FNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
.....++..|.+.|++++|+..++++++ ..|+ ...+..++.+|.+.|++++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVE--NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH--HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1123677788999999999999999998 6553 358889999999999999999998887653
No 112
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.88 E-value=5e-07 Score=101.44 Aligned_cols=133 Identities=9% Similarity=-0.006 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 614 SPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFE 692 (846)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 692 (846)
+.+...+..|.....+.|.+++|..+++...+ +.|| ......++.++.+.+++++|+..++++++.+++ +....+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 33455555555555566666666666666655 4454 334445555555666666666666666655544 4555555
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 693 MVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
++.++...|++++|+.+|+++...+|. +..++..++.++.+.|+.++|...|+++++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555554443 445555555555555555555555555555
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.87 E-value=6.8e-08 Score=86.59 Aligned_cols=96 Identities=13% Similarity=-0.014 Sum_probs=51.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG 736 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 736 (846)
.+..++...|++++|...|+.++..++. +...+..++.++...|++++|+..++++...+|. ++.++..++.++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 3444555555555555555555554433 4445555555555555555555555555554444 4455555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCcC
Q 003122 737 RIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 737 ~~~~A~~~~~~~~~~g~~p~ 756 (846)
++++|+..|+++++ +.|+
T Consensus 107 ~~~eAi~~~~~Al~--~~p~ 124 (144)
T PRK15359 107 EPGLAREAFQTAIK--MSYA 124 (144)
T ss_pred CHHHHHHHHHHHHH--hCCC
Confidence 55555555555555 5553
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.87 E-value=4.4e-07 Score=85.11 Aligned_cols=155 Identities=12% Similarity=0.038 Sum_probs=96.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
..+...+...|+-+.+..+..+.....++ +.......+....+.|++.+|+..+.++....|. +..+|+.++.+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHHHc
Confidence 45555666666666666666655443333 4445555666666777777777777776666666 666777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHH
Q 003122 736 GRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAII 814 (846)
Q Consensus 736 g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 814 (846)
|+.++|...|.++++ +.| ++..+++|+..|.-.|+.++|..++......+ ..|..+-.++.-.....|+.++|+.|
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 777777777777777 666 45566667777777777777777766665532 12344445555555556666666655
Q ss_pred H
Q 003122 815 Q 815 (846)
Q Consensus 815 ~ 815 (846)
-
T Consensus 225 ~ 225 (257)
T COG5010 225 A 225 (257)
T ss_pred c
Confidence 4
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=7.9e-06 Score=99.04 Aligned_cols=335 Identities=10% Similarity=-0.030 Sum_probs=197.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC------CCCHH--HHHHHHHHHH
Q 003122 417 YGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGI------EPNIV--SICTLLAACG 488 (846)
Q Consensus 417 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~------~~~~~--~~~~ll~~~~ 488 (846)
....|+++.+...++.+.......+..........+...|++++|..++......-- .+... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 444566666666555442110011111222334445566777777777776654210 11111 1122223445
Q ss_pred hcCCHHHHHHHHHHHHhCCCccC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC--HHHHHHHHHHHHh
Q 003122 489 RCGRKVNIDAVLLAAEMRDIKLN----TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKV---MPD--SVTYTVLISSCCR 559 (846)
Q Consensus 489 ~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~~~~li~~~~~ 559 (846)
..|+++.|...+..........+ ....+.+...+...|++++|...+++...... .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 67778888777777654311111 12345566667788999998888887764211 111 2244555667778
Q ss_pred cCCHhHHHHHHHHHHHC----CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHH
Q 003122 560 LSRYSEALGFLDEMMDL----KIP---LTNQVYSSVISAYSKQGLIAEAESMFNMMKMS--GCSPD--VITYTAMLHAYN 628 (846)
Q Consensus 560 ~g~~~~A~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~--~~~~~~l~~~~~ 628 (846)
.|++++|...+++.... +.. .....+..+...+...|++++|...+.+.... ...+. ...+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 89999999888877642 211 12234455666777789999999888877652 11122 344555666778
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 003122 629 TAEDWEKACALFLEMETNNI-EPDSIAC-----SALMRAFNKGGQPSKVLLVAEFMREQDITFS---DSIFFEMVLACSL 699 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~-~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 699 (846)
..|++++|...++++....- ......+ ...+..+...|+.+.|..++........... ...+..++.++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 88999999988888764210 1111111 1112344557888888888776654221111 1113456778888
Q ss_pred cCCHHHHHHHHHhhccCC-----CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003122 700 LRDWKTTIDLIKQMEPSF-----HVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS 751 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 751 (846)
.|++++|...++++.... +.....++..++.++...|+.++|...+.++++.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999998888765321 1113456777888899999999999999999884
No 116
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.84 E-value=0.00041 Score=76.24 Aligned_cols=211 Identities=12% Similarity=0.124 Sum_probs=133.9
Q ss_pred HHhcccCCCCHHHHHHHHH--HcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC
Q 003122 117 RWVGRFARKNFPFLIKEIT--QRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPD 194 (846)
Q Consensus 117 ~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 194 (846)
...+++....+..+++.|. +.|..++|..+.+-....+ +.+..+...+-.+|.+.|+.++|..+|+..... .|+
T Consensus 34 kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~ 109 (932)
T KOG2053|consen 34 KLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPS 109 (932)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCc
Confidence 3344556666667777664 5688888888887765443 447778888888888889999999999888763 477
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHCC-CCC
Q 003122 195 AETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTG----------NWREALKVCKKMTENG-VGP 263 (846)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----------~~~~A~~~~~~~~~~g-~~~ 263 (846)
......+..+|.|.+.+.+-.+.--+|-+. ++-+...+=+++..+...- -...|.+.++.+.+.+ ..-
T Consensus 110 eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~ 188 (932)
T KOG2053|consen 110 EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIE 188 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccc
Confidence 777777888888887765544443333332 2334454445555443321 1234666777776654 211
Q ss_pred ChHHHHHHHHHHHcCCCHHHHHHHHH-HHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003122 264 DLVTHNIVLSAYKNGAQYSKALSYFE-LMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSE 332 (846)
Q Consensus 264 ~~~~~~~ll~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 332 (846)
+..-...-...+...|++++|+.++. ...+.-...+...-+.-++.+...+++.+..++-.++..++.+
T Consensus 189 s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 189 SEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 22222223344556778888888883 3333333344555566677788888888888888888877654
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.82 E-value=9.2e-07 Score=99.33 Aligned_cols=131 Identities=12% Similarity=0.034 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 003122 579 PLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACS 656 (846)
Q Consensus 579 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~ 656 (846)
+.+...+..|..+..+.|.+++|..+++...+. .|| ......++.++.+.+++++|+..+++..+ ..|+ .....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 334444444445555555555555555554442 233 33444444444455555555555555444 2232 33334
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
.+..++.+.|++++|..+|+++...++. +...+...+.++...|+.++|...|+++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444455555555555555443322 34444444445555555555555554443
No 118
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.81 E-value=3.8e-07 Score=91.75 Aligned_cols=222 Identities=15% Similarity=0.164 Sum_probs=110.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC
Q 003122 518 AIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIP-LTNQVYSSVISAYSKQG 596 (846)
Q Consensus 518 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 596 (846)
+.+++...|+++.++ .++.+.. .|.......+...+...++-+.++.-+++.+..... .+.........++...|
T Consensus 41 ~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 41 QYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 344555556555433 2222222 444444444443333323344444444433322222 12222223334455567
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChhHHH
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFN----KGGQPSKVL 672 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g~~~~A~ 672 (846)
++++|++++... .+.......+.+|.+.++++.|.+.++.|.+ ...|.. ...+..++. -.+.+.+|.
T Consensus 117 ~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 117 DYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTCCCHHH
T ss_pred CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchhHHHHH
Confidence 777776666432 2455555666667777777777777777765 334432 222222221 223566777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 003122 673 LVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRI-ESMMKLFFKIVSS 751 (846)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 751 (846)
.+|+++.+. ..++..+.+.++.++...|+|++|.++++.+...+|. ++.++.+++.+....|+. +.+.+.+.++..
T Consensus 188 y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~- 264 (290)
T PF04733_consen 188 YIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ- 264 (290)
T ss_dssp HHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH-
T ss_pred HHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-
Confidence 777776543 2335566666666666666666666666666655555 555666666665566654 455555555555
Q ss_pred CCCcC
Q 003122 752 GAEAN 756 (846)
Q Consensus 752 g~~p~ 756 (846)
..|+
T Consensus 265 -~~p~ 268 (290)
T PF04733_consen 265 -SNPN 268 (290)
T ss_dssp -HTTT
T ss_pred -hCCC
Confidence 4554
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=3.6e-06 Score=78.17 Aligned_cols=159 Identities=13% Similarity=0.036 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 621 TAMLHAYNTAEDWEKACALFLEMETNNIEPDSIAC-SALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL 699 (846)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 699 (846)
..++-+....|+.+.|...++++.+. + |.+.-. ..-.--+-..|++++|+++|+..++.++. +..++-.-+.+.-.
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka 132 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHH
Confidence 33333444445555555555554442 2 222111 11111233345555555555555554433 44444444444445
Q ss_pred cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcC---CHHH
Q 003122 700 LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAG---NWRK 775 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g---~~~~ 775 (846)
.|+--+|++-+....+..+. |..+|..|...|...|+++.|.-.+++++- +.| ++..+-.++..++-+| +.+-
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 55555555555554444444 555555555555555555555555555555 555 3334444454422222 2333
Q ss_pred HHHHHHHHHH
Q 003122 776 YIEVLQWMED 785 (846)
Q Consensus 776 A~~~~~~~~~ 785 (846)
|.++|.+.++
T Consensus 210 arkyy~~alk 219 (289)
T KOG3060|consen 210 ARKYYERALK 219 (289)
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.78 E-value=3e-07 Score=82.47 Aligned_cols=113 Identities=9% Similarity=-0.116 Sum_probs=99.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS 751 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 751 (846)
..+++++++.++ ..+...+.++...|++++|+..++.+....|. +..+|..++.++...|++++|+..|+++++
T Consensus 13 ~~~~~~al~~~p----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~- 86 (144)
T PRK15359 13 EDILKQLLSVDP----ETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALM- 86 (144)
T ss_pred HHHHHHHHHcCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-
Confidence 467777777543 33667889999999999999999999989888 889999999999999999999999999999
Q ss_pred CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 752 GAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 752 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
+.| +...+..++.+|...|++++|+..|+++++ +.|+..
T Consensus 87 -l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~ 126 (144)
T PRK15359 87 -LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADA 126 (144)
T ss_pred -cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh
Confidence 999 566999999999999999999999999987 556544
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.77 E-value=0.0004 Score=71.87 Aligned_cols=78 Identities=9% Similarity=0.110 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 003122 263 PDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTS 342 (846)
Q Consensus 263 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 342 (846)
-|+.+|+.||.-+-.. .++++.+.++++... ++-....|..-|..-.+..+++..+.+|.+.+.+- .+...|.+
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv----LnlDLW~l 91 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV----LNLDLWKL 91 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----hhHhHHHH
Confidence 4788888888876655 888888888888754 33355677778888888888888888888887643 35666666
Q ss_pred HHHH
Q 003122 343 IIHL 346 (846)
Q Consensus 343 li~~ 346 (846)
.++-
T Consensus 92 Yl~Y 95 (656)
T KOG1914|consen 92 YLSY 95 (656)
T ss_pred HHHH
Confidence 6653
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.75 E-value=4.4e-06 Score=94.89 Aligned_cols=239 Identities=11% Similarity=0.118 Sum_probs=173.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 579 PLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-----VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI 653 (846)
Q Consensus 579 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 653 (846)
|.+...|...+....+.+++++|.+++++++.. +.+. ...|.++++....-|.-+...+.|+++.+. --...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 555667777777778888888888888888763 2111 346777777766777777788888888873 22244
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc-chhhHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV-SIGLLNQLLHLL 732 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~ 732 (846)
.|..|...|.+.+++++|.++++.|.+.- .-....|...+..+.+..+-+.|..+++++...-|.. ...+....+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 67788888888888888888888888632 1356778888888888888888888888877666652 355666777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH-hHHHHHHHHHhcCCcc
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YG-MFRDIVSFAQTRGGAE 809 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~-~~~~l~~~~~~~~~~~ 809 (846)
++.|+-+.++.+|+..+. -.|- .-.|..+++.-.++|..+.+..+|+++.+.++.|- .. .|+..+.+-...|+.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 888888888888888887 6774 34788888888888888888888888888777653 22 4555566666677777
Q ss_pred hHHHHHHHHHHHhh
Q 003122 810 YAAIIQERIESLRM 823 (846)
Q Consensus 810 ~a~~~~~~l~~l~~ 823 (846)
..+....+..+...
T Consensus 1689 ~vE~VKarA~EYv~ 1702 (1710)
T KOG1070|consen 1689 NVEYVKARAKEYVE 1702 (1710)
T ss_pred hHHHHHHHHHHHHH
Confidence 66666666666443
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=6.6e-07 Score=88.90 Aligned_cols=184 Identities=12% Similarity=0.053 Sum_probs=121.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HH
Q 003122 616 DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS----IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSD--SI 689 (846)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 689 (846)
....+..++..+...|++++|...|+++.. ..|+. .++..++.++...|++++|+..++++++..+.... ..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALES--RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 466777778888888888888888888877 33432 35677778888888888888888888876553221 24
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHH
Q 003122 690 FFEMVLACSLL--------RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYS 761 (846)
Q Consensus 690 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 761 (846)
+..++.++... |++++|++.++++....|. +...+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~-------~~-------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN-------RL-------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH-------HH-------HHHHH
Confidence 55566666544 5666666666666665555 2222211111100 000 00 01123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-CHHhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003122 762 ILLKNLLAAGNWRKYIEVLQWMEDAGI-QP-SYGMFRDIVSFAQTRGGAEYAAIIQERIES 820 (846)
Q Consensus 762 ~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~ 820 (846)
.++..|.+.|++++|+..++++.+..- .| .+..+..++..+...|+.++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567789999999999999999987521 12 234677888999999999999998877654
No 124
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.75 E-value=0.00083 Score=73.98 Aligned_cols=537 Identities=13% Similarity=0.112 Sum_probs=263.5
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 172 RHNQIDKARGLFFEMQKWRCKPDAETYNALIS--AHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREA 249 (846)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 249 (846)
..+++..|......+.+.. |+.. |...+. .+.|.|+.++|..+++.....+.. |..|...+-.+|...|++++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 4577888888888877632 5543 333333 357889999999888877665443 788888888899999999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC----------HHHH
Q 003122 250 LKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQ----------YDKA 319 (846)
Q Consensus 250 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A 319 (846)
..+|+..... -|+......+..+|.+.+++.+-.++--++-+. .+.+...+..+++.....-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999988775 356777777788888888776544444444432 34456666677666655321 1234
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 320 IDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVF-NTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEI 398 (846)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (846)
.+.++.+.+.. +..-+..-...-...+...|++++|..++ ....+.-..-+...-+.-+..+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 55555555543 11111111222233444566677777776 33333322333344445566666677777777777666
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 399 KKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIV 478 (846)
Q Consensus 399 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 478 (846)
...|.. | |...++.+ ++-+.....+|-.. .+...+..+...+..++......+....
T Consensus 253 l~k~~D-d---y~~~~~sv------------~klLe~~~~~~a~~-------~~s~~~~l~~~~ek~~~~i~~~~Rgp~L 309 (932)
T KOG2053|consen 253 LEKGND-D---YKIYTDSV------------FKLLELLNKEPAEA-------AHSLSKSLDECIEKAQKNIGSKSRGPYL 309 (932)
T ss_pred HHhCCc-c---hHHHHHHH------------HHHHHhcccccchh-------hhhhhhhHHHHHHHHHHhhcccccCcHH
Confidence 665422 1 32222221 11111110000000 0111122222222222222211010001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-------HHH
Q 003122 479 SICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSV-------TYT 551 (846)
Q Consensus 479 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~ 551 (846)
...-+...+..-|+.+++...|-.- -| +...|..=+..|...=..+.-..++...... .++.. .+.
T Consensus 310 A~lel~kr~~~~gd~ee~~~~y~~k--fg---~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~ 382 (932)
T KOG2053|consen 310 ARLELDKRYKLIGDSEEMLSYYFKK--FG---DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHL 382 (932)
T ss_pred HHHHHHHHhcccCChHHHHHHHHHH--hC---CCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHH
Confidence 1111111112233333332222111 11 0001111111111111122222222222211 01110 011
Q ss_pred HHHHHHHhcCC-----HhHHHHHHHHHH---HCC------CCCCHH---------HHHHHHHHHHhcCCHH---HHHHHH
Q 003122 552 VLISSCCRLSR-----YSEALGFLDEMM---DLK------IPLTNQ---------VYSSVISAYSKQGLIA---EAESMF 605 (846)
Q Consensus 552 ~li~~~~~~g~-----~~~A~~~~~~~~---~~~------~~~~~~---------~~~~l~~~~~~~g~~~---~A~~~~ 605 (846)
..+......|. -+.-..++.+.. +.| .-|+.. +.+.|++.+.+.++.. +|+-++
T Consensus 383 c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LL 462 (932)
T KOG2053|consen 383 CVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLL 462 (932)
T ss_pred HHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 11111111111 112222222211 111 112221 2456777888877754 566666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003122 606 NMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITF 685 (846)
Q Consensus 606 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 685 (846)
+.-.... +.|..+--.++..|+-.|-+..|.++|+.+--..+.-|..-|. +...+...|++..+...++.....--.-
T Consensus 463 E~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~ 540 (932)
T KOG2053|consen 463 ENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSS 540 (932)
T ss_pred HHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhh
Confidence 6665542 3456667788888888899999999999887655666655543 3344566788888888877776521111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHH---HHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 686 SDSIFFEMVLACSLLRDWKTTID---LIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIV 749 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 749 (846)
-.++-. ++....+.|.+.+..+ +-+++..+.......+=+.....++..++.++-...+..+-
T Consensus 541 ~kE~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 541 LKETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhhhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 112222 2233345555554443 33445433333233444566667777777776666665543
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=1.1e-05 Score=82.40 Aligned_cols=205 Identities=10% Similarity=-0.001 Sum_probs=142.8
Q ss_pred CHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 562 RYSEALGFLDEMMDLK--IPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACAL 639 (846)
Q Consensus 562 ~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 639 (846)
++.++...-+++...+ -.|+...+...+.+......-..+..++-+..+ +--...+....-.+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHH
Confidence 3344444444443221 234455555555544333332333333222222 11233344444455677999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCC
Q 003122 640 FLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH 718 (846)
Q Consensus 640 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 718 (846)
++.++.. .|| ...+......+.+.|+.++|.+.+++++...+. .......++.+|.+.|+.++|+.+++.....+|
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999884 454 566667788899999999999999999997665 367778889999999999999999999988888
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 719 VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 719 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
. ++..|..|+.+|...|+..+|.....+ .|.-.|+|++|+..+..+.+. .+.+.
T Consensus 406 ~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~-~~~~~ 459 (484)
T COG4783 406 E-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ-VKLGF 459 (484)
T ss_pred C-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh-ccCCc
Confidence 8 889999999999999999888666544 355689999999999998876 34443
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.72 E-value=3.5e-06 Score=79.15 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=117.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 581 TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMR 660 (846)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 660 (846)
|..+ ..+...+...|+-+.+..+....... .+.|......++....+.|++.+|+..+.+.... -++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHH
Confidence 4444 55566666777777776666664432 1334556666777778888888888888888764 3556778888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 661 AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
+|.+.|++++|...|.++++..+. ++...+.++..+...|+++.|..++.......+. +..+-.+|..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 888888888888888888876555 6667777777777888888888888777655554 55677778888888888888
Q ss_pred HHHHHHHHH
Q 003122 741 MMKLFFKIV 749 (846)
Q Consensus 741 A~~~~~~~~ 749 (846)
|..+..+-+
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 877665544
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.70 E-value=6.8e-06 Score=93.06 Aligned_cols=238 Identities=13% Similarity=0.064 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003122 476 NIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLIS 555 (846)
Q Consensus 476 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 555 (846)
+...+..|+..+...+++++|..+........ +.....|..+...+.+.++++++..+ . ++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 34556666666666777777777666555442 22233333333355555554444433 2 222
Q ss_pred HHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 556 SCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEK 635 (846)
Q Consensus 556 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 635 (846)
......++.-...++..+.+ ...+..++..++.+|.+.|+.++|..+++++++.. +-|+.+.|.++..|... +.++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 22222333233333334444 23455677788888889999999999999998865 44688888888888888 8899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 003122 636 ACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEP 715 (846)
Q Consensus 636 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 715 (846)
|.+++.+++.. |...+++.++.++|.++....+. +...+..+.......-
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~~-------------- 217 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGHR-------------- 217 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhhh--------------
Confidence 99888888762 66667888888889888887654 4444433332221111
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHH
Q 003122 716 SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLL 768 (846)
Q Consensus 716 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 768 (846)
...--..++..+-..|...++++++..+++.+++ .+| |..+...++..|.
T Consensus 218 -~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 -EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK 268 (906)
T ss_pred -ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH
Confidence 1111234455666677778899999999999999 888 5557778887766
No 128
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=1.1e-05 Score=91.70 Aligned_cols=238 Identities=10% Similarity=0.051 Sum_probs=180.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003122 544 MPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL-KIPL---TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVIT 619 (846)
Q Consensus 544 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 619 (846)
+..+..|...+......++.++|.++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+. ......
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 334556777777778888889999988888763 1211 2246777777777777788888999998874 223567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 003122 620 YTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITF-SDSIFFEMVLACS 698 (846)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 698 (846)
|..|...|.+.+.+++|.++++.|.+. +.-....|..++..+.++.+-++|..++.++++.-++- ........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 888999999999999999999999874 44556789999999999999999999999999844331 2233445556667
Q ss_pred hcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HH-HHHHHHHHHHhcCCHHHH
Q 003122 699 LLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FN-TYSILLKNLLAAGNWRKY 776 (846)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~-~~~~l~~~~~~~g~~~~A 776 (846)
+.|+.+.+..+++.....+|. -...|+.++..-.++|+.+-++.+|++++..++.|. .. .|..++..=...|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 889999999999999988888 678999999999999999999999999999888873 33 454444444445776555
Q ss_pred HHHHHHHHH
Q 003122 777 IEVLQWMED 785 (846)
Q Consensus 777 ~~~~~~~~~ 785 (846)
..+=.++.+
T Consensus 1691 E~VKarA~E 1699 (1710)
T KOG1070|consen 1691 EYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHH
Confidence 555444443
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.67 E-value=2.5e-06 Score=80.97 Aligned_cols=121 Identities=10% Similarity=-0.008 Sum_probs=94.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 003122 630 AEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLAC-SLLRD--WKTT 706 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 706 (846)
.++.++++..+++.++.. +.|...|..++..|...|++++|+..|+++.+.+++ +...+..++.++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 566677777777777642 345778888888888888888888888888887765 677777777764 56666 4888
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 707 IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
.++++++...+|. +..++..++..+.+.|++++|+..++++++ +.|
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~--l~~ 175 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD--LNS 175 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCC
Confidence 8888888888887 778888889999999999999999999988 666
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=7e-07 Score=79.85 Aligned_cols=114 Identities=10% Similarity=0.024 Sum_probs=81.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 753 (846)
.++++++..+. +......++..+...|++++|++.++.+...+|. +..+|..++..+...|++++|...++++++ .
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~ 80 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAA--L 80 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c
Confidence 45555554444 3455566667777777777777777777666665 667777888888888888888888888887 6
Q ss_pred Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 754 EA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 754 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.| +...+..++.+|...|++++|+..++++.+ +.|+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 119 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENP 119 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccc
Confidence 67 455777778888888888888888888776 344443
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.61 E-value=5.4e-06 Score=93.88 Aligned_cols=229 Identities=12% Similarity=0.087 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 546 DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 546 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
+...+..|+..+...+++++|.++.+...+.. |.....|..++..+.+.++.+++..+ . ++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 45678889999889999999999999777753 44455666666677777776665544 2 233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 705 (846)
......++.-..-+...|.+ ..-+..++..++.+|-+.|+.++|..+|+++++.++. +..+.+.++..|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHH
Confidence 33344455444444445554 2334557888899999999999999999999998866 888899999999888 9999
Q ss_pred HHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH---------------------HHHHHH
Q 003122 706 TIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN---------------------TYSILL 764 (846)
Q Consensus 706 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---------------------~~~~l~ 764 (846)
|++++.++... +...+++.++.+++.+++. ..|+.. ++..+-
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 99988876422 4445566777777777776 666422 233333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHH-hcCCcchHHHHH
Q 003122 765 KNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQ-TRGGAEYAAIIQ 815 (846)
Q Consensus 765 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~-~~~~~~~a~~~~ 815 (846)
..|.+.++|++++.+++.+++. .| |......++.++. ...+|+...++.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~~kY~~~~~~ee~l 281 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYKEKYKDHSLLEDYL 281 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHHHHccCcchHHHHH
Confidence 5577778899999999999985 44 4445556655544 355565555444
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=2.6e-05 Score=72.58 Aligned_cols=171 Identities=10% Similarity=0.100 Sum_probs=120.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 585 YSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNK 664 (846)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 664 (846)
|..++-+....|+.+.|...++.+... ++-+...-..-...+-..|++++|+++++.+++.+ +.|.+++.--+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 444555556677777788777777664 22222222222333456678888888888888754 4456677766666777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC---CHHHH
Q 003122 665 GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG---RIESM 741 (846)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A 741 (846)
.|+.-+|++-+..-++.-+. |.+.|..+..+|...|++++|.-.++++.-..|- ++..+..++..+.-.| +++-|
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 78888888877777775443 7888888888888888888888888888777776 5667777777766655 88899
Q ss_pred HHHHHHHHhcCCCc-CHHHHH
Q 003122 742 MKLFFKIVSSGAEA-NFNTYS 761 (846)
Q Consensus 742 ~~~~~~~~~~g~~p-~~~~~~ 761 (846)
.++|.++++ +.| +...+.
T Consensus 211 rkyy~~alk--l~~~~~ral~ 229 (289)
T KOG3060|consen 211 RKYYERALK--LNPKNLRALF 229 (289)
T ss_pred HHHHHHHHH--hChHhHHHHH
Confidence 999999999 888 544443
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=7.1e-05 Score=70.38 Aligned_cols=156 Identities=14% Similarity=0.069 Sum_probs=95.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----
Q 003122 553 LISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYN---- 628 (846)
Q Consensus 553 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 628 (846)
-...|+..|++++|++..... .+......=+..+.+..+++-|.+.+++|.+- .+..|.+.|..++.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 334566777777777766551 12233333344566667777777777777763 24555555555543
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-H
Q 003122 629 TAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTT-I 707 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~ 707 (846)
-.+.+.+|.-+|++|-+. ..|+..+.+....++...|++++|..+++.++....+ ++.++..++-+....|...++ .
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHH
Confidence 234577777777777654 5677777777777777777777777777777776555 566665555555555554433 3
Q ss_pred HHHHhhccCCCc
Q 003122 708 DLIKQMEPSFHV 719 (846)
Q Consensus 708 ~~~~~~~~~~~~ 719 (846)
+.+.++....|.
T Consensus 263 r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 263 RNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHhcCCc
Confidence 455555555554
No 134
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.49 E-value=4.2e-06 Score=73.34 Aligned_cols=98 Identities=8% Similarity=-0.019 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHH
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILL 764 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 764 (846)
+.+..+.++..+...|++++|..+++.+...+|. +...|.+|+.++...|++++|+..|.++.. +.| |+.++..++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHH
Confidence 3455667777888888899999888888877777 778888999999999999999999999999 888 566899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 003122 765 KNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 765 ~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
.+|...|+.++|.+.|+.++..
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999888653
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.49 E-value=4e-06 Score=74.93 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=84.8
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 003122 639 LFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSF 717 (846)
Q Consensus 639 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 717 (846)
.+++++. ..|+ ......++..+...|++++|...++.+.+.++. +...+..++.++...|++++|+..++++....
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555 3443 344556667777788888888888887776554 66777777788888888888888888777666
Q ss_pred CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHH
Q 003122 718 HVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTY 760 (846)
Q Consensus 718 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 760 (846)
|. +...+..++.+|...|++++|...|+++++ +.|+...+
T Consensus 82 p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 121 (135)
T TIGR02552 82 PD-DPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEY 121 (135)
T ss_pred CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchH
Confidence 66 667777888888888888888888888888 77765543
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=3.8e-05 Score=78.71 Aligned_cols=219 Identities=16% Similarity=0.009 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003122 597 LIAEAESMFNMMKMS--GCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLV 674 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 674 (846)
++.++...-+.+... .-.|+...+...+.+......-..+-.++-+-.+ +--........-.+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHH
Confidence 344444444444431 1234555555555544333322233332222222 12234455556667789999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003122 675 AEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAE 754 (846)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 754 (846)
+..++..-|. +.......++++...++.++|.+.++++....|. ....+.+++.+|.+.|+..+|+..+.+.+. -.
T Consensus 329 l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~--~~ 404 (484)
T COG4783 329 LQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLF--ND 404 (484)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhh--cC
Confidence 9999986554 6666777888999999999999999999999998 477888999999999999999999999998 78
Q ss_pred c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH-Hh-cCCcchHHHHHHHHHHHhhc
Q 003122 755 A-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFA-QT-RGGAEYAAIIQERIESLRMK 824 (846)
Q Consensus 755 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~-~~~~~~a~~~~~~l~~l~~~ 824 (846)
| |+..|..|+.+|..+|+..+|...+-++... .-............ .. ...+....++-.++..+...
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~--~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~~~~ 475 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL--AGRLEQAIIFLMRASQQVKLGFPDWARADARIDQLRQQ 475 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH
Confidence 8 6779999999999999999998887776542 22222222222111 11 23445555555555555443
No 137
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=2.5e-07 Score=58.52 Aligned_cols=32 Identities=44% Similarity=0.772 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003122 190 RCKPDAETYNALISAHGRAGQWRWAMNIFDDM 221 (846)
Q Consensus 190 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 221 (846)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666655555
No 138
>PF12854 PPR_1: PPR repeat
Probab=98.44 E-value=3.1e-07 Score=58.13 Aligned_cols=32 Identities=38% Similarity=0.557 Sum_probs=16.5
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 295 NIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSM 326 (846)
Q Consensus 295 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 326 (846)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 139
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=2.5e-06 Score=81.68 Aligned_cols=100 Identities=13% Similarity=0.046 Sum_probs=75.0
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 661 AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
-+.+.+++.+|+..|.++++..+. +...|..-+.+|.+.|.++.|++-.+.....+|. ...+|..|+.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 355677777788878777776655 6666667777777888888887777777777777 56778888888888888888
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHH
Q 003122 741 MMKLFFKIVSSGAEANFNTYSILL 764 (846)
Q Consensus 741 A~~~~~~~~~~g~~p~~~~~~~l~ 764 (846)
|++.|+++++ ++|+..+|-.-+
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHH
Confidence 8888888888 888766554333
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=1.2e-05 Score=83.58 Aligned_cols=124 Identities=16% Similarity=0.186 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
...+|+..+...++++.|+++++++.+..+ + ....++.++...++-.+|++++++.....|. +...+...+..|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~p--e--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDP--E--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCC--c--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 344566666777888888888888887552 2 4445777777788888888888888877777 6777888888899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
..++++.|..+++++++ +.|+ ..+|..|+.+|...|++++|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999 9995 5599999999999999999998887764
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00026 Score=66.66 Aligned_cols=117 Identities=17% Similarity=0.255 Sum_probs=54.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh---
Q 003122 273 SAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSV--- 349 (846)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 349 (846)
..|+..|++++|++...... +......=+.++.+..+++-|.+.+++|.+. .+..+.+.|..+|.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHhc
Confidence 34455555555555554411 2222222333344555555555555555432 133344444443332
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 350 -NGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKN 401 (846)
Q Consensus 350 -~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (846)
.+++.+|.-+|++|-++ ..|+..+.+-...++...|++++|..++++.+..
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 23345555555555443 2444445555555555555555555555555443
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=5.7e-06 Score=79.31 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=93.3
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCC
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGN 772 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~ 772 (846)
+.-+.+.+++++|+..|.++....|. ++..|-+-+.+|.+.|.++.|++-.+.++. ++|... +|..|+.+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 34566789999999999999999998 888999999999999999999999999999 999654 99999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 003122 773 WRKYIEVLQWMEDAGIQPSYGMFRDIVSFA 802 (846)
Q Consensus 773 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 802 (846)
+++|++.|+++++ +.|+...|+.-+.+.
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 9999999999998 889888776655544
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.28 E-value=3e-05 Score=69.88 Aligned_cols=61 Identities=23% Similarity=0.193 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPD----SIACSALMRAFNKGGQPSKVLLVAEFMREQD 682 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (846)
.|..++..+. .++...+...++.+.+. .|+ ......+...+...|++++|...|+.+.+..
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 3444444432 45555555555555542 121 1222233444555555555555555555433
No 144
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.26 E-value=8.6e-05 Score=65.22 Aligned_cols=98 Identities=8% Similarity=-0.034 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
......+..-+...|++++|..+|+.+...++. +...|..++.++...|++++|+..|..+....|. ++..+..++.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 344556677788999999999999999988766 7888899999999999999999999999888876 78888999999
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 003122 732 LGKSGRIESMMKLFFKIVSS 751 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~ 751 (846)
+...|+.+.|++.|+.++..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999883
No 145
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.24 E-value=9.2e-06 Score=80.42 Aligned_cols=264 Identities=13% Similarity=0.077 Sum_probs=148.8
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHH----CCC-CCCHHHHHHHHHHH
Q 003122 522 YMNVGEYEKAIALYKCMKKRKVMPDS----VTYTVLISSCCRLSRYSEALGFLDEMMD----LKI-PLTNQVYSSVISAY 592 (846)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~ 592 (846)
+|+.|+....+.+|+..++.|. -|. .+|..|.++|.-.+++++|++++..=+. .|- .........|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 5556666666666666655542 122 2344455555555666666655432110 000 01112223344445
Q ss_pred HhcCCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH--
Q 003122 593 SKQGLIAEAESMFNMMKM----SGCS-PDVITYTAMLHAYNTAED--------------------WEKACALFLEMET-- 645 (846)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-- 645 (846)
--.|.+++|+....+-+. .|-. .....+..|...|-..|+ ++.|.++|.+-++
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 555666665544333221 1100 113344555555543332 2334444443222
Q ss_pred --CCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc--
Q 003122 646 --NNIE-PDSIACSALMRAFNKGGQPSKVLLVAEFMRE----QDIT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEP-- 715 (846)
Q Consensus 646 --~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 715 (846)
.|-. .-...|..|...|.-.|+++.|+..-+.-+. .|-. .....+..++.++.-.|+++.|++.|+....
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1100 0123566677777778899999876654443 3311 1234567888899999999999999887421
Q ss_pred ---CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 716 ---SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG--AEA---NFNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 716 ---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
.+..+.......|+..|.-..+++.|+.++.+=+... +.- ...++..|+.+|...|..++|+.+.+..++.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1222345556789999999999999999998855411 111 3448889999999999999998877765543
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.24 E-value=5.6e-05 Score=68.14 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=69.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHH
Q 003122 664 KGGQPSKVLLVAEFMREQDITF--SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS--IGLLNQLLHLLGKSGRIE 739 (846)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 739 (846)
..++...+...++.+.+..+.- .......++..+...|++++|...|+.+....+... ..+...|+.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666666666644331 123344555666677777777777776665543322 334455666677777777
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 740 SMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
+|...++.... -......+...+.+|.+.|++++|...|+++
T Consensus 103 ~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777655322 1123445556666777777777777776654
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.00025 Score=70.93 Aligned_cols=157 Identities=9% Similarity=0.004 Sum_probs=80.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-----------HHHHHHH
Q 003122 627 YNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDS-----------IFFEMVL 695 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~~~~l~~ 695 (846)
+...|++++|...--..++.. ..+......-..++.-.++.+.|...|++.+..++..... .+..-+.
T Consensus 179 l~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN 257 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGN 257 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhh
Confidence 445566666666555555421 1122222222223444556666666666666544321110 1111222
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCc---cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcC
Q 003122 696 ACSLLRDWKTTIDLIKQMEPSFHV---VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAG 771 (846)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g 771 (846)
-..+.|++.+|.+.|......+|. +...+|.+.+.+..+.|+.++|+.--+.+++ ++|... .|..-+.++...+
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665544443 1234455555556666666666666666666 555332 5555555566666
Q ss_pred CHHHHHHHHHHHHHC
Q 003122 772 NWRKYIEVLQWMEDA 786 (846)
Q Consensus 772 ~~~~A~~~~~~~~~~ 786 (846)
+|++|++-++++.+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 666666666666543
No 148
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.17 E-value=0.01 Score=59.32 Aligned_cols=254 Identities=17% Similarity=0.119 Sum_probs=176.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHH----HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 523 MNVGEYEKAIALYKCMKKRKVMPDSVTYT----VLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLI 598 (846)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 598 (846)
.-.|+++.|.+-|+.|.. |..|-. .|.-.--+.|..+.|..+-+..-..- +--...+.+.+...|..|++
T Consensus 131 l~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred HhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 347899999999999986 333322 22223346788899998888877653 34456778888999999999
Q ss_pred HHHHHHHHHHHHcC-CCCCHH--HHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHH
Q 003122 599 AEAESMFNMMKMSG-CSPDVI--TYTAMLHAY---NTAEDWEKACALFLEMETNNIEPDSI-ACSALMRAFNKGGQPSKV 671 (846)
Q Consensus 599 ~~A~~~~~~~~~~~-~~p~~~--~~~~l~~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A 671 (846)
+.|+++.+.-.... +.++.. .-..|+.+- .-..+...|...-.+..+ +.||.+ .-..-..++.+.|+..++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 99999998776532 344432 222333221 122356677777777666 677744 333456688999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---hhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIK---QMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKI 748 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 748 (846)
-.+++.+-+..+.|+.... ..+.+.|+. ++.-++ ++....|+ +......+..+-...|++..|..-.+.+
T Consensus 283 ~~ilE~aWK~ePHP~ia~l----Y~~ar~gdt--a~dRlkRa~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 283 SKILETAWKAEPHPDIALL----YVRARSGDT--ALDRLKRAKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred hhHHHHHHhcCCChHHHHH----HHHhcCCCc--HHHHHHHHHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999997776654322 234455553 333333 33333444 5556667888888899999999999999
Q ss_pred HhcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 749 VSSGAEANFNTYSILLKN-LLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 749 ~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.. ..|-...|..|+++ -.+.|+-.++...+-+.+...-.|++.
T Consensus 356 ~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 356 AR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred hh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 99 99999999999999 445599999999999988876666543
No 149
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.17 E-value=0.00033 Score=62.05 Aligned_cols=135 Identities=10% Similarity=0.026 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc-chhhHHH
Q 003122 649 EPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV-SIGLLNQ 727 (846)
Q Consensus 649 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ 727 (846)
-|+...-..|..++...|+..||...|++...--..-|......+..+....++...|...++++-+-+|.- ++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 444444555666666666666666666666652223355555566666666666666666666654333321 2334457
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 728 LLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 728 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++..|...|+.+.|+..|+.++. ..|+...-...+.++.++|+.++|..-+..+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 78888899999999999999999 889888777778889999988888776665544
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.16 E-value=3.3e-05 Score=81.04 Aligned_cols=89 Identities=11% Similarity=-0.005 Sum_probs=56.8
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCC
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGN 772 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 772 (846)
+..+...|++++|++.++++....|. +..+|..++.+|...|++++|+..++++++ +.|+ ...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence 34445556666666666666655555 455666666666666777777777777766 6663 4466666666666777
Q ss_pred HHHHHHHHHHHHH
Q 003122 773 WRKYIEVLQWMED 785 (846)
Q Consensus 773 ~~~A~~~~~~~~~ 785 (846)
+++|+..|+++++
T Consensus 86 ~~eA~~~~~~al~ 98 (356)
T PLN03088 86 YQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666665
No 151
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00064 Score=68.10 Aligned_cols=157 Identities=13% Similarity=-0.019 Sum_probs=107.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------------H
Q 003122 590 SAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIAC-------------S 656 (846)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-------------~ 656 (846)
.++.-.|+.++|...--..++.. ..+......-..++.-.++.+.|...|++.+. +.|+...- .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHH
Confidence 34556777777777766666532 11222222222334456777888888888776 44553321 1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDI---TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
.-..-..+.|++.+|.+.|.+++..+| +++...|...+.+..+.|+..+|+.-.+.+...++. -+.+|..-+.++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHH
Confidence 123345678899999999999987544 445566777777888899999999988888877776 4566666677777
Q ss_pred hcCCHHHHHHHHHHHHh
Q 003122 734 KSGRIESMMKLFFKIVS 750 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~ 750 (846)
..++|++|.+.|+++.+
T Consensus 333 ~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88899999999999988
No 152
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.13 E-value=7.8e-05 Score=69.53 Aligned_cols=84 Identities=12% Similarity=0.055 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPD--SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
.+..++..+...|++++|...|++.++....+. ...+..++.++.+.|++++|+..++++++..+. +...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 344444444445555555555555544211111 233444444444455555555555444443322 23333333444
Q ss_pred HHhcCCH
Q 003122 697 CSLLRDW 703 (846)
Q Consensus 697 ~~~~g~~ 703 (846)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 4444433
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.10 E-value=6.1e-05 Score=65.46 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC----HHHHHH
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV--SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN----FNTYSI 762 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~ 762 (846)
+++..+..+...|++++|++.++.+....|.. ...++..++.++.+.|++++|...|++++. ..|+ ..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK--KYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HCCCCCcccHHHHH
Confidence 34455555566666666666666655444321 134555677777777777777777777776 5554 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 763 LLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 763 l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
++.+|.+.|++++|...++++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 777777777777777777777664
No 154
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.0001 Score=71.50 Aligned_cols=110 Identities=13% Similarity=0.008 Sum_probs=89.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC---CHHHHHHHHHHHH
Q 003122 673 LVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG---RIESMMKLFFKIV 749 (846)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 749 (846)
.-++.-+..+|. |...|..++.+|...|+...|...|.+.....|+ ++..+..++.++..+. ...+|.++|++++
T Consensus 143 a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 143 ARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 334444555666 7788888888888888888888888888877777 7778888888776542 7889999999999
Q ss_pred hcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 750 SSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 750 ~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
. ++| |..+...|+..+..+|++.+|...|+.|++.
T Consensus 221 ~--~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 221 A--LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred h--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 9 999 5558888888899999999999999999986
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.09 E-value=9.3e-06 Score=65.18 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHH
Q 003122 700 LRDWKTTIDLIKQMEPSFHVV-SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF-NTYSILLKNLLAAGNWRKYI 777 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~ 777 (846)
.|++++|+.+++++....|.. +...+..++.+|.+.|++++|..++++ .+ ..|.. .....++.+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 456666666666665555531 344555577777777777777777777 44 45533 45555577777777777777
Q ss_pred HHHHH
Q 003122 778 EVLQW 782 (846)
Q Consensus 778 ~~~~~ 782 (846)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=0.00016 Score=75.37 Aligned_cols=121 Identities=13% Similarity=0.098 Sum_probs=58.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 588 VISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQ 667 (846)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 667 (846)
|+..+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|++++.+.++. .+-+...+......|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 3333444455555555555555431 332 223444444445555555555555542 12233344444444555555
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
++.|+.+.+++.+..|. +...|..++.+|...|+++.|+..+..++
T Consensus 250 ~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 55555555555554333 44455555555555555555555555444
No 157
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.06 E-value=0.02 Score=58.57 Aligned_cols=140 Identities=13% Similarity=0.128 Sum_probs=78.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H
Q 003122 309 CLVKLGQYDKAIDLFHSMREKRSECLPD----IVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAA--Y 382 (846)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~ 382 (846)
.+-+.+++.+|.++|.++.+.... .|. .+.-+.++++|.. ++.+.....+.+..+. .|. ..|..+..+ .
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~-~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~~-s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKES-SPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FGK-SAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhc-chHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cCC-chHHHHHHHHHH
Confidence 345788899999999988764322 111 2223456666654 3555555555555543 121 233333332 2
Q ss_pred HhcCCHHHHHHHHHHHHHC--CCCC------------CHhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCcCHHH
Q 003122 383 ASHGMSKEALSVFNEIKKN--GLCP------------DIVSYTSLLNAYGRSQQPVKAREVFNMMRIN----NLKPNLVS 444 (846)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~ 444 (846)
.+.+.+.+|.+.+....+. +..+ |...-+..++++...|++.+++.+++++... .+.-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3678888888888777654 2221 1122244556666777777777777666543 23356666
Q ss_pred HHHHHHHHH
Q 003122 445 YSALIDAYG 453 (846)
Q Consensus 445 ~~~li~~~~ 453 (846)
|+.++-.+.
T Consensus 170 yd~~vlmls 178 (549)
T PF07079_consen 170 YDRAVLMLS 178 (549)
T ss_pred HHHHHHHHh
Confidence 666555444
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.06 E-value=6.9e-05 Score=78.61 Aligned_cols=97 Identities=6% Similarity=-0.138 Sum_probs=78.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 003122 658 LMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR 737 (846)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 737 (846)
.+..+...|++++|+..|+++++.++. +...+..++.+|...|++++|+..++++....|. +..+|..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 345566778888888888888887665 6777778888888888888888888888877776 66788888999999999
Q ss_pred HHHHHHHHHHHHhcCCCcCHH
Q 003122 738 IESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p~~~ 758 (846)
+++|+..|+++++ +.|+..
T Consensus 86 ~~eA~~~~~~al~--l~P~~~ 104 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGDS 104 (356)
T ss_pred HHHHHHHHHHHHH--hCCCCH
Confidence 9999999999998 888544
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.02 E-value=0.00023 Score=77.96 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=51.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGM 794 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 794 (846)
++.+|..++-.....|++++|...++++++ +.|+...|..++.+|...|+.++|++.++++.. +.|...+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 345666666666667888888888888888 777766777778888888888888888877766 4555443
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.00 E-value=7.4e-05 Score=61.69 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLL 768 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 768 (846)
+..++..+...|++++|+..++.+....|. +..++..++..+...|++++|.+.++++++ ..|+ ..++..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHH
Confidence 344455555566666666666655554444 334556666666666777777777777766 5553 346666666677
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003122 769 AAGNWRKYIEVLQWMED 785 (846)
Q Consensus 769 ~~g~~~~A~~~~~~~~~ 785 (846)
..|++++|...+++..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 77777777777666654
No 161
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.98 E-value=0.0012 Score=58.57 Aligned_cols=129 Identities=9% Similarity=0.024 Sum_probs=108.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC---HHH
Q 003122 683 ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN---FNT 759 (846)
Q Consensus 683 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~ 759 (846)
+.|....-..++.++.+.|+..||...|++........+...+..++.+....++..+|...++++.+ ..|+ +-.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e--~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME--YNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh--cCCccCCCCc
Confidence 45567777889999999999999999999988776666888889999999999999999999999999 6674 336
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHH
Q 003122 760 YSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQ 815 (846)
Q Consensus 760 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 815 (846)
...+++.|..+|++++|...|+.+.. ..|++...-....++...|...++..-+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 77788999999999999999999987 6788876666677888888666665444
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.98 E-value=8.4e-05 Score=61.33 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=47.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG 736 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 736 (846)
.++..+...|++++|+..++++.+..+. +...+..++.++...|++++|++.++......+. +..++..++..+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHH
Confidence 3444444455555555555555443322 2234444455555555555555555554444443 2245556666666666
Q ss_pred CHHHHHHHHHHHHh
Q 003122 737 RIESMMKLFFKIVS 750 (846)
Q Consensus 737 ~~~~A~~~~~~~~~ 750 (846)
++++|...+.++++
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666666655
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.97 E-value=1.6e-05 Score=63.89 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=39.5
Q ss_pred cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHH
Q 003122 665 GGQPSKVLLVAEFMREQDIT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMK 743 (846)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 743 (846)
.|+++.|+.+++++.+..+. ++...+..++.++.+.|++++|+.++++ ....+. +..+...++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 34555555555555554331 1333444455555555555555555555 222222 23333344666666666666666
Q ss_pred HHHH
Q 003122 744 LFFK 747 (846)
Q Consensus 744 ~~~~ 747 (846)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 164
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.97 E-value=0.00012 Score=63.63 Aligned_cols=102 Identities=9% Similarity=-0.016 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc--chhhHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITF--SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV--SIGLLNQLL 729 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 729 (846)
++..++..+.+.|++++|.+.|+.+++..+.. ....+..++.++...|++++|+..++.+....|.. ...++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34455556666677777777777666543321 13455566667777777777777777665554442 244566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 730 HLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 730 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
.++...|+.++|.+.++++++ ..|+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~--~~p~~ 109 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK--RYPGS 109 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH--HCcCC
Confidence 777778888888888888877 66654
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.97 E-value=0.00012 Score=68.13 Aligned_cols=94 Identities=4% Similarity=-0.029 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHH
Q 003122 688 SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV--VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILL 764 (846)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 764 (846)
..+..++..+...|++++|+..++++....+. ....+|..++.++...|++++|+..+++++. +.|+ ..++..++
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHH
Confidence 34455555556666666666666665433322 1234677788888888888888888888887 6774 34566666
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 003122 765 KNLL-------AAGNWRKYIEVLQWM 783 (846)
Q Consensus 765 ~~~~-------~~g~~~~A~~~~~~~ 783 (846)
.+|. +.|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 777777555555443
No 166
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=0.036 Score=59.51 Aligned_cols=380 Identities=12% Similarity=0.040 Sum_probs=200.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC--------ChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 003122 227 APSRSTYNNLINACGSTGNWREALKVCKKMTEN-GVGP--------DLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIR 297 (846)
Q Consensus 227 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g~~~--------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 297 (846)
.|.+..|..+.......-.++-|+..|-+...- |++. ....-.+=+. .--|+|++|+++|-+|..++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 467777877777666666677777666555432 2210 0000111122 22488999999988886543
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003122 298 PDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNA 377 (846)
Q Consensus 298 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 377 (846)
..|..+.+.|++-...++++.--. +.+-..-..+|+.+.+.+.....+++|.+.+..--. . ..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~ 827 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---EN 827 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---Hh
Confidence 346667788888887777754211 111001245788888888888888888888766431 1 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCC
Q 003122 378 LMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGL 457 (846)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 457 (846)
.+.++.+...+++-+.+-..+. -+....-.+.+++...|.-++|.+.|-+-. .|. ..+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHH
Confidence 4566666666666555544433 355566778888888888888887765432 222 23556777788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 458 LAEAVEVFREMEQDGIEPNIVSICTLL-AACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYK 536 (846)
Q Consensus 458 ~~~A~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 536 (846)
+.+|.++-+... -|...+...-- ..+...++..+ .|..+.+.|..-+|-+++.
T Consensus 894 W~~avelaq~~~----l~qv~tliak~aaqll~~~~~~e----------------------aIe~~Rka~~~~daarll~ 947 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHME----------------------AIEKDRKAGRHLDAARLLS 947 (1189)
T ss_pred HHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHH----------------------HHHHhhhcccchhHHHHHH
Confidence 888888776543 23333221110 11111222222 2344556666666666666
Q ss_pred HHhh----CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003122 537 CMKK----RKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSG 612 (846)
Q Consensus 537 ~~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (846)
+|-+ ++.++-..--..++.++ -..++.++++-.+.....|...+... +...|-..++-++.+..-.
T Consensus 948 qmae~e~~K~~p~lr~KklYVL~Al-LvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-- 1017 (1189)
T KOG2041|consen 948 QMAEREQEKYVPYLRLKKLYVLGAL-LVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-- 1017 (1189)
T ss_pred HHhHHHhhccCCHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--
Confidence 6654 23332222111122221 12233344444444434332222111 2233333444444433322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003122 613 CSPDVITYTAMLHAYNTAEDWEKACALFLEMET-NNIEPDSIACSALMRAFNKGGQPSKVLLVAEFM 678 (846)
Q Consensus 613 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (846)
-.....+..|..-....|..+.|++.--.+.+ ..+-|...+|..|.-+-+....+.-.-+.|-++
T Consensus 1018 -gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1018 -GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred -hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 12234445555556677888888876555544 235566677776665555444443333333333
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.93 E-value=0.00021 Score=66.61 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFS--DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLH 730 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 730 (846)
..+..++..+...|++++|+..|+++++..+.+. ...+..++.++...|++++|+..++++....|. ....+..++.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3455566666667777777777777665433321 234444455555555555555555554444443 3344444444
Q ss_pred HHHhcCCHHH
Q 003122 731 LLGKSGRIES 740 (846)
Q Consensus 731 ~~~~~g~~~~ 740 (846)
++...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 4444444333
No 168
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.89 E-value=0.039 Score=59.29 Aligned_cols=203 Identities=16% Similarity=0.210 Sum_probs=127.3
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-CCCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003122 157 CARNDIYNMMIRLHARHNQIDKARGLFFEMQK-WRCKP--------DAETYNALISAHGRAGQWRWAMNIFDDMLRAAVA 227 (846)
Q Consensus 157 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 227 (846)
.|-+..|..+...-.+.-.++-|...|-+... .|++. +...-.+=|.+| -|++++|.++|-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 45678898888888887888888888876654 22211 111111122222 378888888888776642
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHH
Q 003122 228 PSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPD----LVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTH 303 (846)
Q Consensus 228 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 303 (846)
..+..+.+.|++-...++++.- |-..| ...|+.+...+.....+++|.+.|..-.. .
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~ 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------T 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------h
Confidence 3466677778887766655321 11111 34677777777777788888888776432 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003122 304 NIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYA 383 (846)
Q Consensus 304 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 383 (846)
...+.++.+..++++...+.+.+.+ |....-.+.+++...|.-++|.+.|-+.- .|. ..+..|.
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-------~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv 889 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-------DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCV 889 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-------ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHH
Confidence 2456777777777777766666543 44556677888888888888877664422 122 2345566
Q ss_pred hcCCHHHHHHHHHHH
Q 003122 384 SHGMSKEALSVFNEI 398 (846)
Q Consensus 384 ~~g~~~~A~~~~~~m 398 (846)
...++.+|.++-+..
T Consensus 890 ~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHhc
Confidence 677777777766553
No 169
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.88 E-value=5.3e-05 Score=58.13 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=52.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAG-NWRKYIEVLQWMED 785 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 785 (846)
++.+|..++..+...|++++|+..|+++++ +.|+ ...|..++.+|...| ++++|++.++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 356788888888888999999999999988 8885 448888888888888 68889888888875
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.87 E-value=0.00028 Score=65.62 Aligned_cols=91 Identities=12% Similarity=-0.005 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDITF--SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
|..++..+...|++++|+..|++++...+.+ ...++..++.++...|++++|+..++++....|. ....+..++.++
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~i~ 116 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 3333444444444444444444444332211 1123444444444444444444444444444333 223344444444
Q ss_pred H-------hcCCHHHHHHHHH
Q 003122 733 G-------KSGRIESMMKLFF 746 (846)
Q Consensus 733 ~-------~~g~~~~A~~~~~ 746 (846)
. ..|++++|...++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHH
Confidence 4 5556554443333
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.86 E-value=0.0013 Score=66.83 Aligned_cols=92 Identities=12% Similarity=0.207 Sum_probs=44.6
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----H-HHH
Q 003122 624 LHAYNTA-EDWEKACALFLEMETN----NIEPD--SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFS-----D-SIF 690 (846)
Q Consensus 624 ~~~~~~~-g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~-~~~ 690 (846)
...|... |++++|++.|+++.+. | .+. ...+..++..+.+.|++++|+++|+++.......+ . ..+
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 3345555 6777777777776642 1 111 22444556666777777777777777665322111 1 122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccC
Q 003122 691 FEMVLACSLLRDWKTTIDLIKQMEPS 716 (846)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 716 (846)
...+.++...|+.-.|...+++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23333444445555555555554433
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.85 E-value=6e-05 Score=56.95 Aligned_cols=56 Identities=13% Similarity=0.239 Sum_probs=36.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 728 LLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 728 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++..+...|++++|++.|+++++ ..|+ ...+..++.++...|++++|+..++++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566667777777777777776 6664 33666666777777777777777776665
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.85 E-value=8.5e-05 Score=56.12 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=57.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
.++..+...|++++|+..++.+....|. +..+|..++.++...|++++|...|+++++ ..|+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 4678899999999999999999999988 889999999999999999999999999999 88864
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.83 E-value=0.00071 Score=74.13 Aligned_cols=142 Identities=13% Similarity=0.007 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHH--hc---CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc--------CChhHHHHHHHHHH
Q 003122 614 SPDVITYTAMLHAYN--TA---EDWEKACALFLEMETNNIEPD-SIACSALMRAFNKG--------GQPSKVLLVAEFMR 679 (846)
Q Consensus 614 ~p~~~~~~~l~~~~~--~~---g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 679 (846)
+.|...|...+.+.. .. ++..+|+.+|+++++ ..|+ ...|..+..++... ++...+.+..+++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 334455555554422 11 225566666666666 4555 33444433333221 12234444444444
Q ss_pred HCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 680 EQD-ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 680 ~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
... ...+...+..++..+...|++++|...++++...+| +...|..++..+...|+.++|.+.+++++. +.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--SWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 421 122456677777777778999999999999888887 467889999999999999999999999999 999766
Q ss_pred HHH
Q 003122 759 TYS 761 (846)
Q Consensus 759 ~~~ 761 (846)
+|+
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 664
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.81 E-value=0.00048 Score=58.57 Aligned_cols=93 Identities=18% Similarity=0.105 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC---HH-HHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVV--SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN---FN-TYSIL 763 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~-~~~~l 763 (846)
.+..+.++...|+.++|+.+|++....+... ...++..++..|...|++++|..++++.+. ..|+ .. ....+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE--EFPDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHHH
Confidence 3445556666666666666666655443322 245666788888888888888888888887 5564 22 44445
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003122 764 LKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~ 784 (846)
+.++...|++++|+..+-...
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 667888888888888776654
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.80 E-value=0.0031 Score=62.04 Aligned_cols=178 Identities=8% Similarity=0.003 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 003122 581 TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VIT---YTAMLHAYNTAEDWEKACALFLEMETNNIEPD--SIA 654 (846)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~ 654 (846)
+...+...+..+...|++++|.+.|+.+.... |+ ... .-.++.+|.+.+++++|...+++.++. .|+ ...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchH
Confidence 44444445566677888888888888887752 33 222 245566777888888888888888873 333 223
Q ss_pred HHHHHHHHH--hcC---------------C---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 655 CSALMRAFN--KGG---------------Q---PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 655 ~~~l~~~~~--~~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
+.....+.+ ..+ + ..+|+..|+.+++.-|. .. -..+|...+..+.
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~--S~-------------ya~~A~~rl~~l~ 171 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN--SQ-------------YTTDATKRLVFLK 171 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC--Ch-------------hHHHHHHHHHHHH
Confidence 333333322 111 1 13455556666554332 11 1233333222221
Q ss_pred cCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 715 PSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF----NTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 715 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
..- ..--..++..|.+.|++..|+.-++.+++ -.|+. .+...+..+|.+.|..++|..+.+.+
T Consensus 172 ~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~--~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 172 DRL----AKYELSVAEYYTKRGAYVAVVNRVEQMLR--DYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHH----HHHHHHHHHHHHHcCchHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 110 00112567778888888888888888888 66643 36667778888888888888776655
No 177
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.78 E-value=0.0011 Score=66.34 Aligned_cols=130 Identities=10% Similarity=0.027 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 003122 584 VYSSVISAYSKQGLIAEAESMFNMMK----MSGCSP-DVITYTAMLHAYNTAEDWEKACALFLEMET----NNI-EPDSI 653 (846)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~-~p~~~ 653 (846)
.|..|.+.|.-.|+++.|+...+.=+ +.|-.. ....+..|.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666667788888877665432 223111 145677788888888888888888777542 221 12244
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQ-----DITFSDSIFFEMVLACSLLRDWKTTIDLIKQM 713 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (846)
.+..|...|.-...+++|++++.+-+.. +..-....+++++.++...|..++|+.+.+..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5667777777777888888877665431 11113456778888888888888888776654
No 178
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.78 E-value=7.1e-05 Score=57.42 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCc
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG-RIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p 755 (846)
+...|..++..+...|++++|+..++++...+|. ++.+|..++.+|...| ++++|++.++++++ +.|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK--LDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH--HST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH--cCc
Confidence 3456677777777777777777777777777766 6778888888888888 68888888888887 665
No 179
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.68 E-value=7.5e-05 Score=48.02 Aligned_cols=33 Identities=36% Similarity=0.661 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003122 197 TYNALISAHGRAGQWRWAMNIFDDMLRAAVAPS 229 (846)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 229 (846)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555555444
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.68 E-value=0.0032 Score=64.05 Aligned_cols=89 Identities=10% Similarity=0.069 Sum_probs=38.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--C-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHH
Q 003122 590 SAYSKQGLIAEAESMFNMMKMSGC--S-PD--VITYTAMLHAYNTAEDWEKACALFLEMET----NNIEPD--SIACSAL 658 (846)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~~--~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~--~~~~~~l 658 (846)
..|-..|++++|.+.|.+...... . +. ...|.....+|.+. ++++|+..++++.+ .| .|+ ...+..+
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~l 120 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHH
Confidence 345556666666666665543100 0 00 12333333344333 66666666666553 11 111 1233344
Q ss_pred HHHHHhc-CChhHHHHHHHHHHH
Q 003122 659 MRAFNKG-GQPSKVLLVAEFMRE 680 (846)
Q Consensus 659 ~~~~~~~-g~~~~A~~~~~~~~~ 680 (846)
...|... |++++|++.|+++.+
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444 555555555555543
No 181
>PRK11906 transcriptional regulator; Provisional
Probab=97.67 E-value=0.0019 Score=67.03 Aligned_cols=147 Identities=13% Similarity=0.047 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 632 DWEKACALFLEMET-NNIEPD-SIACSALMRAFNK---------GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL 700 (846)
Q Consensus 632 ~~~~A~~~~~~~~~-~g~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 700 (846)
..+.|..+|.+... ..+.|+ ...|..+..++.. .....+|.++.+++++.++. |+.....++.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 45677788888872 125665 4455555444332 23456678888999998866 888888999999999
Q ss_pred CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH---HHHHHHHHHHhcCCHHHHH
Q 003122 701 RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN---TYSILLKNLLAAGNWRKYI 777 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~ 777 (846)
++++.|..+++++...+|+ ...+|...+..+.-.|+.++|.+.++++++ ++|--. ..-..++.|+..+ .++|+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence 9999999999999999998 788888999999999999999999999999 999433 3333344566555 67788
Q ss_pred HHHHHH
Q 003122 778 EVLQWM 783 (846)
Q Consensus 778 ~~~~~~ 783 (846)
.+|-+-
T Consensus 428 ~~~~~~ 433 (458)
T PRK11906 428 KLYYKE 433 (458)
T ss_pred HHHhhc
Confidence 776543
No 182
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.64 E-value=9.1e-05 Score=47.62 Aligned_cols=33 Identities=45% Similarity=0.726 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 232 TYNNLINACGSTGNWREALKVCKKMTENGVGPD 264 (846)
Q Consensus 232 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~ 264 (846)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 183
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.63 E-value=0.11 Score=53.56 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=59.7
Q ss_pred HHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHh---cCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 003122 592 YSKQGL-IAEAESMFNMMKMSGCSPDVITYTAMLH----AYNT---AEDWEKACALFLEMETNNIEPD----SIACSALM 659 (846)
Q Consensus 592 ~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~ 659 (846)
+-+.|. -++|+++++.+++.. +-|...-|.... .|.+ ...+.+-+.+-+-+.+.|+.|- ...-+.|.
T Consensus 389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 334444 566677776666631 223333322221 1211 1122222222222334555543 22334444
Q ss_pred HH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 003122 660 RA--FNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEP 715 (846)
Q Consensus 660 ~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 715 (846)
++ +...|++.++..+-.-+.+ +.|++.++..++.++....++++|..++..++.
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 33 4456666666665555555 445666666666666666667777766666654
No 184
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.63 E-value=0.082 Score=52.20 Aligned_cols=223 Identities=17% Similarity=0.116 Sum_probs=142.7
Q ss_pred CCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 561 SRYSEALGFLDEMMDLKIP-LTNQVYSSVISAYSKQGLIAEAESMFNMMKMS-GCSPDVITYTAMLHAYNTAEDWEKACA 638 (846)
Q Consensus 561 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (846)
+....+...+......... .....+......+...+++..+...+...... ........+..+...+...+++.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555555543211 12455666666677777777777777766642 123345566666666777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 003122 639 LFLEMETNNIEPDSIACSALMR-AFNKGGQPSKVLLVAEFMREQDI--TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEP 715 (846)
Q Consensus 639 ~~~~~~~~g~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 715 (846)
.+.........+ ......... .+...|+++.|...++++....+ ......+......+...++.++++..+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777777632222 122222233 67777888888888888765332 12333444444456677788888888887766
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 716 SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 716 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
..+......+..+...+...++++.|...+.+++. ..|+ ...+..+...+...|.++++...+++..+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 65553345677888888888888999999988888 7775 446666666666777788888888887763
No 185
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.001 Score=67.33 Aligned_cols=135 Identities=13% Similarity=0.081 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 618 ITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNK-GGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
.+|..++....+.+..+.|..+|.++.+.+ ..+..+|...+..-.+ .++.+.|..+|+.+++.-+. +...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 356666666666666777777777776432 1223344444443223 44555577777777664322 55666666666
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVS--IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+...|+.+.|..+|++....-+... ..+|...+..-.+.|+++...++.+++.+ ..|+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hhhh
Confidence 6666666666666666654433311 34566666666666666666666666666 5554
No 186
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.61 E-value=0.0012 Score=65.43 Aligned_cols=91 Identities=12% Similarity=0.001 Sum_probs=65.0
Q ss_pred HhcCCHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC----HHHHHHHHHHHHhcC
Q 003122 698 SLLRDWKTTIDLIKQMEPSFHVVS--IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN----FNTYSILLKNLLAAG 771 (846)
Q Consensus 698 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g 771 (846)
...|++++|+..|+.+....|... ..++..++.+|...|++++|...|+++++ ..|+ ..++..++.+|...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~--~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK--NYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhHHHHHHHHHHHHcC
Confidence 445677777777777766666532 45677788888888888888888888887 6664 236666777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 003122 772 NWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 772 ~~~~A~~~~~~~~~~g~~p~~ 792 (846)
++++|..+|+++++. .|+.
T Consensus 232 ~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 232 DTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred CHHHHHHHHHHHHHH--CcCC
Confidence 888888888888763 4543
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0024 Score=62.30 Aligned_cols=112 Identities=15% Similarity=0.046 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhhccCCCccchhhH
Q 003122 649 EPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR---DWKTTIDLIKQMEPSFHVVSIGLL 725 (846)
Q Consensus 649 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 725 (846)
+-|...|..|..+|...|+.+.|...|.++.+..++ +...+..++.++..+. ...++..+++++...+|. ++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 345677888888888888888888888888876544 6677766666654333 356788888888888777 77888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q 003122 726 NQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILL 764 (846)
Q Consensus 726 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 764 (846)
..|+..+...|++.+|...++.|++ ..|....+..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~--~lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD--LLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh--cCCCCCchHHHH
Confidence 8888899999999999999999998 666544444443
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.57 E-value=0.039 Score=54.35 Aligned_cols=64 Identities=13% Similarity=0.030 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HHHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003122 162 IYNMMIRLHARHNQIDKARGLFFEMQKWRCKPD-AETY---NALISAHGRAGQWRWAMNIFDDMLRAAVA 227 (846)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 227 (846)
.+......+.+.|++++|.+.|+++...- |+ ...- -.++.++.+.+++++|+..|++.++..+.
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 33344555566677777777777766532 22 2221 33556666777777777777777665443
No 189
>PRK15331 chaperone protein SicA; Provisional
Probab=97.56 E-value=0.0029 Score=56.04 Aligned_cols=93 Identities=4% Similarity=-0.041 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLL 768 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 768 (846)
.+..+.-+...|++++|..+|+-+.-.++. +...|..|+.++...+++++|+..|..+.. +.+ |+..+...+.+|.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~--l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFT--LLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCCCccchHHHHHH
Confidence 344555566788888888888877666665 567788888888888999999999988888 666 5667888888899
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003122 769 AAGNWRKYIEVLQWMED 785 (846)
Q Consensus 769 ~~g~~~~A~~~~~~~~~ 785 (846)
..|+.++|...|+.+.+
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999998888876
No 190
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.55 E-value=0.00012 Score=46.62 Aligned_cols=31 Identities=42% Similarity=0.618 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003122 197 TYNALISAHGRAGQWRWAMNIFDDMLRAAVA 227 (846)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 227 (846)
+|+.++.+|++.|+++.|.++|+.|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 191
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.53 E-value=0.00014 Score=46.33 Aligned_cols=31 Identities=42% Similarity=0.728 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 232 TYNNLINACGSTGNWREALKVCKKMTENGVG 262 (846)
Q Consensus 232 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~ 262 (846)
+|+.++.+|++.|+++.|.++|++|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.52 E-value=0.00021 Score=54.55 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=21.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 735 SGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.|++++|++.|+++++ ..| +..++..++.+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444 444 233444444444444444444444444433
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.51 E-value=0.00031 Score=53.62 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=55.4
Q ss_pred HhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHH
Q 003122 698 SLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSIL 763 (846)
Q Consensus 698 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 763 (846)
...|++++|++.++++....|. +..++..++.+|.+.|++++|.+++++++. ..|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHH
Confidence 4689999999999999999998 788899999999999999999999999999 89986555443
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.50 E-value=0.0015 Score=64.65 Aligned_cols=94 Identities=1% Similarity=-0.018 Sum_probs=56.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCH
Q 003122 663 NKGGQPSKVLLVAEFMREQDITFS--DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV--SIGLLNQLLHLLGKSGRI 738 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 738 (846)
.+.|++++|+..|+.+++..|... +..++.++.+|...|++++|+..|+.+....|.. ...++..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 445666666666666665443311 2455556666666666666666666655433321 345566667777777777
Q ss_pred HHHHHHHHHHHhcCCCcCHH
Q 003122 739 ESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p~~~ 758 (846)
++|...|+++++ ..|+..
T Consensus 234 ~~A~~~~~~vi~--~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIK--KYPGTD 251 (263)
T ss_pred HHHHHHHHHHHH--HCcCCH
Confidence 777777777777 667543
No 195
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.49 E-value=0.0027 Score=66.59 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=81.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH
Q 003122 191 CKPDAETYNALISAHGRAGQWRWAMNIFDDMLRA--AVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTH 268 (846)
Q Consensus 191 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 268 (846)
.+.+......+++.+....+++.+..++-..... ....-..|..++++.|...|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3455556666666666666677777776666554 22222344567777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 003122 269 NIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKL 313 (846)
Q Consensus 269 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 313 (846)
|.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776665555666665555555554
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.48 E-value=0.0042 Score=52.86 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=31.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 623 MLHAYNTAEDWEKACALFLEMETNNIEPD--SIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
+..++-..|+.++|+.+|++.+..|+... ...+..+.+.+...|++++|+.++++...
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555666666666666665554433 22444555555566666666666655554
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.46 E-value=0.00066 Score=52.65 Aligned_cols=61 Identities=10% Similarity=0.189 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 729 LHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 729 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
...|...+++++|.+.++++++ +.|+ ...|...+.+|.+.|++++|.+.++++.+ ..|+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcH
Confidence 3566777888888888888887 7774 44777777778888888888888888776 345444
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.43 E-value=0.02 Score=54.88 Aligned_cols=167 Identities=14% Similarity=0.075 Sum_probs=83.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHH
Q 003122 587 SVISAYSKQGLIAEAESMFNMMKMSGCS-P-DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS----IACSALMR 660 (846)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~ 660 (846)
..+..+...|++.+|...|+.+...... | -....-.++.++.+.|++++|...+++.++. .|+. .++..++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHH
Confidence 3444556667777777777776654211 1 1344556666666777777777777776652 2321 12222222
Q ss_pred HHHh-----------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHH
Q 003122 661 AFNK-----------GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLL 729 (846)
Q Consensus 661 ~~~~-----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 729 (846)
++.. .+...+|+..|+.+++.-|. +.-..+|...+..+...- ..--..++
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~---------------S~y~~~A~~~l~~l~~~l----a~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN---------------SEYAEEAKKRLAELRNRL----AEHELYIA 148 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT---------------STTHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC---------------chHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 2211 12233455555555543332 122233333333222110 00112466
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcCHH----HHHHHHHHHHhcCCHHHH
Q 003122 730 HLLGKSGRIESMMKLFFKIVSSGAEANFN----TYSILLKNLLAAGNWRKY 776 (846)
Q Consensus 730 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A 776 (846)
..|.+.|.+..|..-++.+++ -.|+.. +...++.+|.+.|..+.|
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~--~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIE--NYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 778888888888888888887 667543 556667778888877644
No 199
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.42 E-value=0.0025 Score=51.94 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=39.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCChHHHHH
Q 003122 200 ALISAHGRAGQWRWAMNIFDDMLRAAV-APSRSTYNNLINACGSTG--------NWREALKVCKKMTENGVGPDLVTHNI 270 (846)
Q Consensus 200 ~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g--------~~~~A~~~~~~~~~~g~~~~~~~~~~ 270 (846)
..|..++..|++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555666666666666666666 556666666665554332 12233445555555555555555555
Q ss_pred HHHHH
Q 003122 271 VLSAY 275 (846)
Q Consensus 271 ll~~~ 275 (846)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55443
No 200
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.41 E-value=0.0022 Score=52.16 Aligned_cols=81 Identities=22% Similarity=0.360 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHcCC--------CHHHHHHHHHHHHhCCCCCChHH
Q 003122 232 TYNNLINACGSTGNWREALKVCKKMTENGV-GPDLVTHNIVLSAYKNGA--------QYSKALSYFELMKGTNIRPDTTT 302 (846)
Q Consensus 232 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~ 302 (846)
+-...|..+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. +.-..+.+|+.|...++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566777777999999999999999999 899999999998876643 34467788888988889999999
Q ss_pred HHHHHHHHHh
Q 003122 303 HNIVIYCLVK 312 (846)
Q Consensus 303 ~~~li~~~~~ 312 (846)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887765
No 201
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.39 E-value=0.0029 Score=66.42 Aligned_cols=122 Identities=14% Similarity=0.086 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHH
Q 003122 369 KPNIVSYNALMAAYASHGMSKEALSVFNEIKKN--GLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYS 446 (846)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 446 (846)
+.+......++..+....+++++..++-+.... ....-..|..++++.|.+.|..++++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344555555666666666667777776666553 121223445577777777777777777777766777777777777
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 447 ALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRC 490 (846)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 490 (846)
.|++.+.+.|++..|.++...|...+...+..|....+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777776665555555555545554443
No 202
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.37 E-value=0.0048 Score=62.45 Aligned_cols=135 Identities=15% Similarity=0.068 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 583 QVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHA-YNTAEDWEKACALFLEMETNNIEPDSIACSALMRA 661 (846)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 661 (846)
.+|..+++..-+.+.++.|..+|+++.+.+ ..+...|...... |...++.+.|.++|+..++. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777777777777777532 1223344444444 22245556677777777764 44556667777777
Q ss_pred HHhcCChhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc
Q 003122 662 FNKGGQPSKVLLVAEFMREQ-DITF-SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV 719 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 719 (846)
+.+.|+.+.|..+|++++.. .... ....|...+..-.+.|+++.+..+.+++.+..+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 77777777777777777753 1111 2246667777777777777777777777655554
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.30 E-value=0.031 Score=53.62 Aligned_cols=61 Identities=11% Similarity=0.106 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003122 164 NMMIRLHARHNQIDKARGLFFEMQKWR--CKPDAETYNALISAHGRAGQWRWAMNIFDDMLRA 224 (846)
Q Consensus 164 ~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 224 (846)
-.....+.+.|++++|...|+.+.... -+--....-.++.++.+.|+++.|...++.+++.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444555566666666666555421 0111334444555666666666666666666554
No 204
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.30 E-value=0.00026 Score=43.94 Aligned_cols=26 Identities=42% Similarity=0.722 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 003122 198 YNALISAHGRAGQWRWAMNIFDDMLR 223 (846)
Q Consensus 198 ~~~li~~~~~~g~~~~A~~~~~~~~~ 223 (846)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
No 205
>PRK15331 chaperone protein SicA; Provisional
Probab=97.24 E-value=0.016 Score=51.52 Aligned_cols=92 Identities=11% Similarity=0.046 Sum_probs=68.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG 736 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 736 (846)
....-+...|++++|..+|.-+.-.++- +...+..++.++...+++++|+..|.......+. ++......+.+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 3444566788888888888888776655 6677778888888888888888888766443332 3444557788888888
Q ss_pred CHHHHHHHHHHHHh
Q 003122 737 RIESMMKLFFKIVS 750 (846)
Q Consensus 737 ~~~~A~~~~~~~~~ 750 (846)
+.+.|+..|+.+++
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888888887
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.23 E-value=0.0013 Score=50.94 Aligned_cols=62 Identities=11% Similarity=0.038 Sum_probs=49.0
Q ss_pred HHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHH
Q 003122 695 LACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNT 759 (846)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 759 (846)
.+|...+++++|++.++++...+|. ++..|...+.++...|++++|.+.++++++ ..|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHH
Confidence 4567777888888888887777777 777888888888888888888888888888 7775543
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.11 Score=49.45 Aligned_cols=136 Identities=8% Similarity=-0.009 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCCHHHHHHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ-----DITFSDSIFFEM 693 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l 693 (846)
..+.++.++.-.|.+.-...++.+.++..-+-++.....|++.-.+.|+.+.|..+|+...+. ++..........
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445666666667778888888888887654556777778888888888888888888866542 222223333344
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
..++.-++++..|...+.++...++. ++.+-|+-+-++.-.|+...|++..+.+++ ..|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCcc
Confidence 44556666777777777777666665 555556665566666777777777777777 66643
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.21 E-value=0.0015 Score=67.73 Aligned_cols=63 Identities=14% Similarity=0.005 Sum_probs=32.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN----TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+...|++++.+|...|++++|+..|+++++ ++|+.. +|++++.+|..+|+.++|++.++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555555 555322 355555555555555555555555544
No 209
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.20 E-value=0.00046 Score=42.76 Aligned_cols=27 Identities=41% Similarity=0.663 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 233 YNNLINACGSTGNWREALKVCKKMTEN 259 (846)
Q Consensus 233 ~~~ll~~~~~~g~~~~A~~~~~~~~~~ 259 (846)
|++++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444433
No 210
>PRK11906 transcriptional regulator; Provisional
Probab=97.18 E-value=0.012 Score=61.34 Aligned_cols=118 Identities=8% Similarity=0.047 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 668 PSKVLLVAEFMR---EQDITFSDSIFFEMVLACSL---------LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 668 ~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
.+.|+.+|.+++ +.++. ....|..++.++.. .....+|.++.+++.+.++. ++.+...++.+++-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 466888999999 54433 34455544444332 23456788889999988888 888899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 736 GRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 736 g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
|+++.|...|+++.. ++||.. +|+..+....-.|+.++|.+.+++..+ +.|-
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~ 404 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPR 404 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCch
Confidence 999999999999999 999765 888889999999999999999999766 4553
No 211
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.18 E-value=0.28 Score=48.26 Aligned_cols=226 Identities=17% Similarity=0.152 Sum_probs=152.3
Q ss_pred cCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 525 VGEYEKAIALYKCMKKRKVM-PDSVTYTVLISSCCRLSRYSEALGFLDEMMDL-KIPLTNQVYSSVISAYSKQGLIAEAE 602 (846)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 602 (846)
.+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34555555666555554221 12455666666777778888887777777652 23455566667777777778888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003122 603 SMFNMMKMSGCSPDVITYTAMLH-AYNTAEDWEKACALFLEMETNNIEP----DSIACSALMRAFNKGGQPSKVLLVAEF 677 (846)
Q Consensus 603 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (846)
..+.........+ ......... .+...|++++|...+.+... ..| ....+......+...++.++|...+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 8888877643222 122223333 67788888888888888865 333 233444444456677888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 678 MREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 678 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+...........+..+...+...++++.|...+.......+. ....+..+...+...|.++++...+.+.+. ..|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 268 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE--LDPD 268 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH--hCcc
Confidence 887543313566777888888888888998888888776665 344566667777777789999999999998 7776
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.018 Score=52.02 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=75.5
Q ss_pred HHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 003122 661 AFNKGGQPSKVLLVAEFMREQ--DITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRI 738 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 738 (846)
.....|+.+.+...+++++.. |.-...... ..........++.. -..++..++..+...|++
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~---------~~W~~~~r~~l~~~-------~~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDD---------EEWVEPERERLREL-------YLDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT---------STTHHHHHHHHHHH-------HHHHHHHHHHHHHHTT-H
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc---------cHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccCH
Confidence 345677888888888888873 321111000 11112222333332 234566788889999999
Q ss_pred HHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHh
Q 003122 739 ESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWME-----DAGIQPSYGM 794 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~p~~~~ 794 (846)
++|.+.+++++. .+| |-..|..++.+|...|+..+|+.+|+++. +.|+.|++.+
T Consensus 79 ~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 79 EEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 999999999999 999 66799999999999999999999998874 3588888764
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.15 E-value=0.0013 Score=51.71 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC---cC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVSSG--AE---AN-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
..+++.++.+|...|++++|+..|+++++.. .. |+ ..++..++.+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4578899999999999999999999988631 11 22 33788889999999999999999998764
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.11 E-value=0.012 Score=54.60 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 003122 247 REALKVCKKMTENGVGPDLVTHNIVLSAYK 276 (846)
Q Consensus 247 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 276 (846)
+-|++++++|...|+.||..++..|++.+.
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG 149 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFG 149 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhc
Confidence 445555555555555555555555555553
No 215
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.10 E-value=0.012 Score=51.08 Aligned_cols=85 Identities=8% Similarity=0.095 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH----
Q 003122 685 FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV--SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN---- 758 (846)
Q Consensus 685 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---- 758 (846)
.....+..-+......|++++|++.++.+....|-. ...+-..|+.+|.+.|++++|...+++.++ +.|.+.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdY 85 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDY 85 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccH
Confidence 345556666777778888888888888887665542 355667899999999999999999999999 888533
Q ss_pred HHHHHHHHHHhcC
Q 003122 759 TYSILLKNLLAAG 771 (846)
Q Consensus 759 ~~~~l~~~~~~~g 771 (846)
+++..+-++.++.
T Consensus 86 a~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 86 AYYMRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0096 Score=60.40 Aligned_cols=93 Identities=14% Similarity=0.075 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLL 768 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~ 768 (846)
+..++.++.+.+++.+|+....+.+...|. ++.++..-+.+|...|+++.|+..|+++++ ++|++. +-..|+..-.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQ 336 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH
Confidence 344444555555555555555555555544 445555666666666666666666666666 666433 4444444433
Q ss_pred hcCCHH-HHHHHHHHHHH
Q 003122 769 AAGNWR-KYIEVLQWMED 785 (846)
Q Consensus 769 ~~g~~~-~A~~~~~~~~~ 785 (846)
+...+. ...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333322 33556666654
No 217
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.037 Score=54.28 Aligned_cols=116 Identities=9% Similarity=-0.000 Sum_probs=53.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHH--HHHHHHHHhcCCHHHH
Q 003122 630 AEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ-DITFSDSIF--FEMVLACSLLRDWKTT 706 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~--~~l~~~~~~~g~~~~A 706 (846)
.|+..+|...++++++. .+.|..++..--++|.-.|+.+.-...+++++.. +....-..| ......+...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 35555555555555543 3444555555555555555555555555555532 111101111 1122233445555555
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 707 IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFK 747 (846)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 747 (846)
++.-++..+.++. +.-+-.++++++...|+..++.+...+
T Consensus 195 Ek~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 5555555555444 323333445555555555555544433
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.04 E-value=0.07 Score=56.92 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 370 PNIVSYNALMAAYASHGMSKEALSV 394 (846)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~ 394 (846)
+..+.+.+-+..|...|.+++|..+
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~i 578 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQI 578 (1081)
T ss_pred cccccccccchhhhhccchhhhhcc
Confidence 3344455555667777777776653
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.02 E-value=0.16 Score=54.41 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=46.4
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHH---------HHHHHCCCCcCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHCCCC
Q 003122 406 DIVSYTSLLNAYGRSQQPVKAREVF---------NMMRINNLKPNLVSYSALIDAYGSNGLL--AEAVEVFREMEQDGIE 474 (846)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~A~~~~---------~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~g~~ 474 (846)
-...+.+-+..|...|.+++|..+- +.+... ..+...++..-++|.+..+. -+.+.-++++.+.|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 3444555566677888888775531 111111 11223344444556554443 3444555666677766
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 475 PNIVSICTLLAACGRCGRKVNIDAVL 500 (846)
Q Consensus 475 ~~~~~~~~ll~~~~~~g~~~~a~~~~ 500 (846)
|+... +...|+-.|++.+|.++|
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklF 655 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLF 655 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHH
Confidence 66543 233455556666665554
No 220
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.01 E-value=0.032 Score=46.62 Aligned_cols=91 Identities=13% Similarity=0.007 Sum_probs=61.9
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-----HHHHHHHHHHHH
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-----FNTYSILLKNLL 768 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~ 768 (846)
+-++...|+++.|++.|.+.....|. .+.+||+-+.++.-.|+.++|..-+.++++ +.-+ ..+|..-+..|.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~Ale--Lag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALE--LAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHH--hcCccchHHHHHHHHHHHHHH
Confidence 33556667777777777776666655 566777777777777777777777777777 3221 225666666677
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 003122 769 AAGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 769 ~~g~~~~A~~~~~~~~~~g 787 (846)
..|+-++|..-|+.+-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 7788777777777776655
No 221
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.95 E-value=0.58 Score=47.98 Aligned_cols=107 Identities=16% Similarity=0.119 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 621 TAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL 700 (846)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 700 (846)
+..+.-+...|+...|.++..+.. -||...|...+.+|+..|+|++-..+... .. ++..|.-.+.+|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK---sPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KK---SPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC---CCCChHHHHHHHHHC
Confidence 344445555666666666655542 35666666777777777777766554332 11 234455566666667
Q ss_pred CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 701 RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFK 747 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 747 (846)
|+..+|..++.++.. ..-...|.+.|++.+|.+...+
T Consensus 251 ~~~~eA~~yI~k~~~----------~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKIPD----------EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhCCh----------HHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777766331 2455566677777776655443
No 222
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.75 Score=51.34 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=16.8
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 753 AEANFNTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 753 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
..|+...+..|.+++.+. +.++-.+.+.+..
T Consensus 878 C~~e~~~~m~l~~s~~q~-~~~~~~~f~~~~e 908 (933)
T KOG2114|consen 878 CLPELRGVMDLKRSQEQK-KTDDFDEFFHQSE 908 (933)
T ss_pred cchhhhhhHHHHHHHHHh-hhhHHHHHHHhhc
Confidence 345555666666666555 4444444444443
No 223
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.90 E-value=0.86 Score=49.17 Aligned_cols=132 Identities=12% Similarity=0.195 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 003122 336 DIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV-SYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLL 414 (846)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 414 (846)
+-..|+.++.---.....+.+...+..++.. -|... -|......-.+.|..+.+.++|++.+. |++-....|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4556777776555555567777777777755 45554 455566666678899999999999886 3665666666665
Q ss_pred HHHH-hcCChHHHHHHHHHHHHC-CC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 003122 415 NAYG-RSQQPVKAREVFNMMRIN-NL-KPNLVSYSALIDAYGSNGLLAEAVEVFREMEQ 470 (846)
Q Consensus 415 ~~~~-~~g~~~~A~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (846)
..+. ..|+.+...+.|+..... |. --....|...|.--...+++.....++++.++
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 5544 457777777888777653 21 12344677777777778888888888888887
No 224
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.43 Score=45.54 Aligned_cols=150 Identities=12% Similarity=0.037 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003122 634 EKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQM 713 (846)
Q Consensus 634 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 713 (846)
+.-+++|++=.. ...+.++.++.-.|.+.-.+..++++++.+++.++.....++....+.|+.+.|...++..
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 555566665443 2455667777777888889999999999887778899999999999999999999999966
Q ss_pred ccCCCccc-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003122 714 EPSFHVVS-----IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 714 ~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 787 (846)
.+.....+ ..+..+....+.-++++.+|...+.+++. .+| |...-+.=+-++.-.|+..+|++.++.|.+.
T Consensus 239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~--~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~- 315 (366)
T KOG2796|consen 239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILR--MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ- 315 (366)
T ss_pred HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccc--cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 54433322 33344555666677899999999999998 777 5555555556677789999999999999874
Q ss_pred CCCCHHh
Q 003122 788 IQPSYGM 794 (846)
Q Consensus 788 ~~p~~~~ 794 (846)
.|.+.+
T Consensus 316 -~P~~~l 321 (366)
T KOG2796|consen 316 -DPRHYL 321 (366)
T ss_pred -CCccch
Confidence 454443
No 225
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.87 E-value=0.025 Score=56.00 Aligned_cols=228 Identities=10% Similarity=0.025 Sum_probs=134.6
Q ss_pred HHhcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCC---HHHHHHHHHHHHh
Q 003122 557 CCRLSRYSEALGFLDEMMDL--KIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKM--SGCSPD---VITYTAMLHAYNT 629 (846)
Q Consensus 557 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~l~~~~~~ 629 (846)
+....+.++|+..+.+.+.. +...-..++..+..+.++.|.+++++..--.-+. ..+... ...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888776643 1112234566777788888888777654332222 111111 2345555555555
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc
Q 003122 630 AEDWEKACALFLEMETN-NIEPD---SIACSALMRAFNKGGQPSKVLLVAEFMREQDI-----TFSDSIFFEMVLACSLL 700 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~-g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 700 (846)
.-++.+++.+-+.-... |..|. ......+..++.-.+.++++++.|+.+..... ...-.++..++..+.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55666666655554431 22221 22344466666667778888888888876321 12234567778888888
Q ss_pred CCHHHHHHHHHhhccCCCcc---chh------hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCc-CHHHHHHHHHH
Q 003122 701 RDWKTTIDLIKQMEPSFHVV---SIG------LLNQLLHLLGKSGRIESMMKLFFKIVSS----GAEA-NFNTYSILLKN 766 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~~---~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~ 766 (846)
.++++|+-+..++.+.-... +.. ++..++-++...|++..|.+.-+++.+. |-.| .......++++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 88888888777764332221 111 1234556677778777777777776552 2222 22255567777
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 003122 767 LLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~ 784 (846)
|...|+.+.|..-|+.+.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 888888888877777664
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.011 Score=59.98 Aligned_cols=138 Identities=13% Similarity=0.000 Sum_probs=94.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQ-DITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
--...|.+.|++..|...|++++.. +.. ..-+.++......- -..++++|+.+|.+.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~--------------~~~~~ee~~~~~~~--------k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYR--------------RSFDEEEQKKAEAL--------KLACHLNLAACYLKL 270 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhcc--------------ccCCHHHHHHHHHH--------HHHHhhHHHHHHHhh
Confidence 3466788888888888888887752 100 00011111111111 234678999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH-HHHHHHhcC-CcchHH
Q 003122 736 GRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRD-IVSFAQTRG-GAEYAA 812 (846)
Q Consensus 736 g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~~-~~~~a~ 812 (846)
+++.+|++.-.++++ +.|+ ....+.-+.+|...|.++.|...|+++++ +.|+...... +..+-.+.. ..+...
T Consensus 271 ~~~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kek 346 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEK 346 (397)
T ss_pred hhHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 9995 55888899999999999999999999998 7887765443 333333322 233446
Q ss_pred HHHHHHHH
Q 003122 813 IIQERIES 820 (846)
Q Consensus 813 ~~~~~l~~ 820 (846)
++|.++-.
T Consensus 347 k~y~~mF~ 354 (397)
T KOG0543|consen 347 KMYANMFA 354 (397)
T ss_pred HHHHHHhh
Confidence 66665544
No 227
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.87 E-value=0.021 Score=52.91 Aligned_cols=102 Identities=19% Similarity=0.334 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 003122 336 DIVTFTSIIHLYSV-----NGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSY 410 (846)
Q Consensus 336 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 410 (846)
|-.+|..+++.|.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~------------ 111 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE------------ 111 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH------------
Confidence 55555555555543 24555555555555555555555555555555432 2211 00000000
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCC
Q 003122 411 TSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNG 456 (846)
Q Consensus 411 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 456 (846)
.. ---.+.+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 112 ---F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 112 ---FM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ---hc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 00 011234556677777777777777777777777765544
No 228
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.85 E-value=0.072 Score=52.91 Aligned_cols=229 Identities=14% Similarity=0.133 Sum_probs=154.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC--CCCC---HHHHHHHHHHHHh
Q 003122 522 YMNVGEYEKAIALYKCMKKRK--VMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLK--IPLT---NQVYSSVISAYSK 594 (846)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~---~~~~~~l~~~~~~ 594 (846)
+....+.++|+..+.+.+.+- ...--.++..+..+.+..|.+++++.+--..+..- .... ...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999988877641 11123467777888899999988876554433211 1111 2345566666666
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhc
Q 003122 595 QGLIAEAESMFNMMKMS-GCSPD---VITYTAMLHAYNTAEDWEKACALFLEMETNNI---EP--DSIACSALMRAFNKG 665 (846)
Q Consensus 595 ~g~~~~A~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p--~~~~~~~l~~~~~~~ 665 (846)
-.++.+++.+-..-... |..|. ......|..++.-.+.++++++.|+.+...-- .| ...++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66677776666554442 22221 23445577788888899999999999886211 11 245788999999999
Q ss_pred CChhHHHHHHHHHHH----CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhhc----cC-CCccchhhHHHHHHH
Q 003122 666 GQPSKVLLVAEFMRE----QDITFS-----DSIFFEMVLACSLLRDWKTTIDLIKQME----PS-FHVVSIGLLNQLLHL 731 (846)
Q Consensus 666 g~~~~A~~~~~~~~~----~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~~~~~l~~~ 731 (846)
.++++|..+..++.+ .+.+.- ..+.+.+.-++...|.+-.|.+..++.. .. +..........++..
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999988887775 333211 1234566778889999999988887652 22 222235556788999
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 003122 732 LGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~ 750 (846)
|...|+.|.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 9999999999999999865
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.81 E-value=0.26 Score=50.94 Aligned_cols=177 Identities=14% Similarity=0.075 Sum_probs=86.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 552 VLISSCCRLSRYSEALGFLDEMMDLK---IPLTNQVYSSVISAYSK---QGLIAEAESMFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 552 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
.++-+|....+++..+++.+.+...- +.....+-...+-++.+ .|+.++|++++..++...-.++..+|..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444666666666666666665431 11122222233444555 6777777777777555444566667666666
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 626 AYNT---------AEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 626 ~~~~---------~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
.|-. ....++|+..|.+.-+ +.||...=..++..+.-.|...+...-.+++. ..+...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~-----------~~l~~l 292 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIG-----------VKLSSL 292 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHH-----------HHHHHH
Confidence 5531 1235666666666655 34543322222222333333222111111110 001111
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+.+.|. ..+..+.-.+.+++.++.-.|+.++|.+.++++.+ +.|.
T Consensus 293 lg~kg~-------------~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~--l~~~ 337 (374)
T PF13281_consen 293 LGRKGS-------------LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK--LKPP 337 (374)
T ss_pred HHhhcc-------------ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCc
Confidence 112221 11111322345777777788888888888888887 5553
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.74 E-value=0.79 Score=46.42 Aligned_cols=319 Identities=17% Similarity=0.145 Sum_probs=181.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--H
Q 003122 130 LIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHAR--HNQIDKARGLFFEMQKWRCKPDAETYNALISA--H 205 (846)
Q Consensus 130 l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~ 205 (846)
+++.+.. .+..+...|..-++.. .|.+|..++.. .|+-..|+++-.+..+. +..|......|+.+ -
T Consensus 61 lv~~iw~--sP~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaa 130 (531)
T COG3898 61 LVRSIWE--SPYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAA 130 (531)
T ss_pred HHHHHHh--CcHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHH
Confidence 4444433 2445666666655443 45566555553 57888888887765531 23454444444433 2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHH
Q 003122 206 GRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKAL 285 (846)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 285 (846)
.-.|+++.|.+-|+.|... ++....-...|.-...+.|..+.|.+.-++..+.-.. -...+...+...|..|+++.|+
T Consensus 131 l~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred HhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 3468999999999999762 1111122233333345778888888887777665332 3467778888888999999999
Q ss_pred HHHHHHHhCC-CCCChHHH--HHHHHHH---HhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 286 SYFELMKGTN-IRPDTTTH--NIVIYCL---VKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGV 359 (846)
Q Consensus 286 ~~~~~m~~~~-~~~~~~~~--~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 359 (846)
++.+.-+... +.++..-- ..|+.+- .-.-+...|.+.-.+..+..+++.|-.+ .-...+.+.|+..++-.+
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav---~AAralf~d~~~rKg~~i 285 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAV---VAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHH---HHHHHHHhccchhhhhhH
Confidence 9888766443 23332211 1122111 1123455666666666555544444322 234567777888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003122 360 FNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKN-GLCP-DIVSYTSLLNAYGRSQQPVKAREVFNMMRINN 437 (846)
Q Consensus 360 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 437 (846)
++.+-+....|++. ++..+.+.|+. +..-+++..+. .++| +..+...+...-...|++..|..--+.....
T Consensus 286 lE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~- 358 (531)
T COG3898 286 LETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE- 358 (531)
T ss_pred HHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-
Confidence 88877764444432 22223444443 33333332211 1223 3445555666667777777776655555443
Q ss_pred CCcCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHC
Q 003122 438 LKPNLVSYSALIDAYGS-NGLLAEAVEVFREMEQD 471 (846)
Q Consensus 438 ~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~ 471 (846)
.|....|..|.+.-.. .|+-.++...+.+.++.
T Consensus 359 -~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 -APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5666666666665443 47777777777777664
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.74 E-value=0.065 Score=58.53 Aligned_cols=175 Identities=15% Similarity=0.098 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------HH----hcCChhHH
Q 003122 602 ESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRA------FN----KGGQPSKV 671 (846)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~------~~----~~g~~~~A 671 (846)
.-+|.-++.. ++| ....++....-.|+-+.+++++.+..+.+---.+.+-..|+.- ++ .....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4455555553 233 3445666666778888888888887653211112222222211 11 13345667
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc---CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEP---SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKI 748 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 748 (846)
.++++.+.+.-|+ +.-.....+..+...|+.++|++.++++.. .-+.....++..+++.+.-.++|++|.+.|.++
T Consensus 253 ~~lL~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 253 EELLEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 7777777765443 344445556667777777777777776432 222333444556667777777777777777777
Q ss_pred HhcCCCc-CHHHHHHHHHH-HHhcCCH-------HHHHHHHHHH
Q 003122 749 VSSGAEA-NFNTYSILLKN-LLAAGNW-------RKYIEVLQWM 783 (846)
Q Consensus 749 ~~~g~~p-~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~ 783 (846)
.+ ... ....|..+..+ |...|+. ++|.++++++
T Consensus 332 ~~--~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 332 LK--ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred Hh--ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 76 444 23344444333 6666766 5555555444
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.016 Score=55.98 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=11.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
.+..|+....+.|+.++|...|+++++
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 333444444444444444444444444
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.68 E-value=0.02 Score=55.27 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC----HHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVV--SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN----FNTYSIL 763 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l 763 (846)
.+..+..+...|++.+|.+.|.......|.. .+.++..|+.++...|++++|...|..+.+ -.|+ +..+..|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k--~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK--DYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH--hCCCCCCChHHHHHH
Confidence 3444555666777777777777766665543 356778899999999999999999999998 5563 3588888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 764 LKNLLAAGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
+.+..+.|+.++|..+|+++.+. .|+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~--YP~t 248 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR--YPGT 248 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH--CCCC
Confidence 99999999999999999999874 4544
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.26 Score=48.22 Aligned_cols=155 Identities=8% Similarity=0.025 Sum_probs=97.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 661 AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
.....|+..+|...|+.+....+. +......++.+|...|+.+.|..++..++.............-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 455677777777777777776555 4555667777777788888888877777655544332222223344444444444
Q ss_pred HHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCC-cchHHHHHHH
Q 003122 741 MMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PSYGMFRDIVSFAQTRGG-AEYAAIIQER 817 (846)
Q Consensus 741 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~~~-~~~a~~~~~~ 817 (846)
...+-.++- .+| |...-..++..|...|+.++|++.+=.++++... .|...-+.++.++.--|. .+.+..+.++
T Consensus 222 ~~~l~~~~a---adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 222 IQDLQRRLA---ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 444444443 478 6668888899999999999999887777654322 244556677777666553 3445544444
Q ss_pred HH
Q 003122 818 IE 819 (846)
Q Consensus 818 l~ 819 (846)
+-
T Consensus 299 L~ 300 (304)
T COG3118 299 LY 300 (304)
T ss_pred HH
Confidence 43
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.66 E-value=0.017 Score=60.19 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSD--SIFFEMVLACSLLRDWKTTIDLIKQMEPS 716 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 716 (846)
...++.+..+|.+.|++++|+..|+++++.++.... ..|+.++.+|...|+.++|++.++++...
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556777777777777777777777777775544211 23666666666666666666666666543
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.36 Score=45.51 Aligned_cols=204 Identities=14% Similarity=0.085 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003122 514 AYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYS 593 (846)
Q Consensus 514 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 593 (846)
.|.....+|...+++++|...+.+..+- ...+...| -....++.|.-+.+++.+. +.-...|.--..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444555666777777777766665531 01111111 1122345555555555542 223334555566677
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC---HHHHHHHHHHHHhcCCh
Q 003122 594 KQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNN--IEPD---SIACSALMRAFNKGGQP 668 (846)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~---~~~~~~l~~~~~~~g~~ 668 (846)
.+|..+-|-..+++.-+. ....+.++|+++|++...-= -..+ ...+....+.+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777777666665441 12345566666666654310 0011 12344445566777777
Q ss_pred hHHHHHHHHHHHCCC----CCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh---ccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 669 SKVLLVAEFMREQDI----TFS-DSIFFEMVLACSLLRDWKTTIDLIKQM---EPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 669 ~~A~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
++|-..+.+-..... -++ -..+...+.++.-..++..|...++.- +.-....+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 777665554332110 011 122344444555566777777777652 2222222344555666655 4556555
Q ss_pred HHHH
Q 003122 741 MMKL 744 (846)
Q Consensus 741 A~~~ 744 (846)
+..+
T Consensus 246 ~~kv 249 (308)
T KOG1585|consen 246 IKKV 249 (308)
T ss_pred HHHH
Confidence 5443
No 237
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.64 E-value=0.68 Score=44.58 Aligned_cols=175 Identities=11% Similarity=0.054 Sum_probs=104.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 003122 589 ISAYSKQGLIAEAESMFNMMKMSGC-SP-DVITYTAMLHAYNTAEDWEKACALFLEMETN-NIEPDSIACSALMRAFNKG 665 (846)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~ 665 (846)
+..-.+.|++++|.+.|+.+..... .| ...+.-.++.++.+.+++++|+..+++.+.. +-.|| ..|...+.+++.-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHh
Confidence 4445677888888888888886421 11 2455666677788888999999998888873 22333 3444444444421
Q ss_pred -------CCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 666 -------GQP---SKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 666 -------g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
.+. .+|+.-|+.+++.-|. ... -..|...+..+... -..-=..++..|.+.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPn--S~Y-------------a~dA~~~i~~~~d~----LA~~Em~IaryY~kr 180 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPN--SRY-------------APDAKARIVKLNDA----LAGHEMAIARYYLKR 180 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCC--Ccc-------------hhhHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 122 2344444444443221 111 11121111111100 001113678889999
Q ss_pred CCHHHHHHHHHHHHhcCCCcCH-H---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 736 GRIESMMKLFFKIVSSGAEANF-N---TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 736 g~~~~A~~~~~~~~~~g~~p~~-~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
|.+..|..-++++++ -.|+. . .+..|..+|.+.|..++|...-+-+..
T Consensus 181 ~~~~AA~nR~~~v~e--~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 181 GAYVAAINRFEEVLE--NYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred cChHHHHHHHHHHHh--ccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999999999999999 56642 2 555666779999999999887666544
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.58 E-value=0.12 Score=56.46 Aligned_cols=169 Identities=17% Similarity=0.116 Sum_probs=114.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH------H----hcCCHHH
Q 003122 566 ALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAY------N----TAEDWEK 635 (846)
Q Consensus 566 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~------~----~~g~~~~ 635 (846)
...+|.-++.. +||. +..++....-.||-+.+++.+.+..+.+---.+..--.|+.-| + ...+.+.
T Consensus 176 G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455556654 4553 4456666777899999999999887743111222222222111 1 2457889
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 636 ACALFLEMETNNIEPDSIACSA-LMRAFNKGGQPSKVLLVAEFMREQD---ITFSDSIFFEMVLACSLLRDWKTTIDLIK 711 (846)
Q Consensus 636 A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 711 (846)
|.++++.+.+ .-|+...|.. -.+.+...|+.++|++.|+++.... .+.....+..++..+...++|++|.+.+.
T Consensus 252 a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 9999999998 4688766654 3556778999999999999877421 12244567788899999999999999999
Q ss_pred hhccCCCccchhhHHHHH-HHHHhcCCHHHH
Q 003122 712 QMEPSFHVVSIGLLNQLL-HLLGKSGRIESM 741 (846)
Q Consensus 712 ~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A 741 (846)
.+.+.... +..+|..+. .++...|+.+.+
T Consensus 330 ~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~ 359 (468)
T PF10300_consen 330 RLLKESKW-SKAFYAYLAAACLLMLGREEEA 359 (468)
T ss_pred HHHhcccc-HHHHHHHHHHHHHHhhccchhh
Confidence 99887665 555554444 445567888333
No 239
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.54 E-value=0.007 Score=47.55 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
..+++.++.+|...|++++|++.++++++
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677888888888888888888888876
No 240
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.51 E-value=1.2 Score=45.68 Aligned_cols=79 Identities=9% Similarity=0.187 Sum_probs=37.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 484 LAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRY 563 (846)
Q Consensus 484 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 563 (846)
+..|...|+...|.++-.+.. -|+...|-..+.+++..+++++-..+-.. + -.+..|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCH
Confidence 344444555555555443332 23455555555555555555544433221 1 1223455555555555555
Q ss_pred hHHHHHHHH
Q 003122 564 SEALGFLDE 572 (846)
Q Consensus 564 ~~A~~~~~~ 572 (846)
.+|..+...
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555555544
No 241
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.49 E-value=1.3 Score=45.79 Aligned_cols=136 Identities=12% Similarity=0.089 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDIT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
.+|..++..-.+..-.+.|..+|-++.+.++. ++..+++.++ -+...|+...|-.+++.-....++.. ..-+..+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~-E~~~~~d~~ta~~ifelGl~~f~d~~-~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFI-EYYATGDRATAYNIFELGLLKFPDST-LYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHH-HHHhcCCcchHHHHHHHHHHhCCCch-HHHHHHHHH
Confidence 34556666666666788889999998887743 2333333333 35567888888888888777777633 333456666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 732 LGKSGRIESMMKLFFKIVSSGAEAN--FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
+...++-+.|+.+|++++++ +..+ -..|..++.-=.+-|+...|..+=++|.+ +.|...
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen 536 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQEN 536 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHh
Confidence 77788889999999987763 3333 34788888877888988888888888877 345443
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.41 E-value=0.0074 Score=40.96 Aligned_cols=40 Identities=10% Similarity=0.175 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHH
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILL 764 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 764 (846)
.+|..++..|...|++++|+++|+++++ ..|+ ...|..|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhh
Confidence 4567788888888888888888888888 7884 44666554
No 243
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.41 E-value=1.9 Score=46.70 Aligned_cols=420 Identities=8% Similarity=0.022 Sum_probs=222.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003122 299 DTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNAL 378 (846)
Q Consensus 299 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 378 (846)
+...|..++.---...+.+.+...+..++.+-|- -...|......-.+.|..+.+.++|++.+.. ++-....|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl---~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPL---CYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCcc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 4556666665555555567777788888765433 3446777778888999999999999999874 55555566655
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHC-CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH--
Q 003122 379 MAAYA-SHGMSKEALSVFNEIKKN-GLC-PDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYG-- 453 (846)
Q Consensus 379 i~~~~-~~g~~~~A~~~~~~m~~~-g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-- 453 (846)
+..++ ..|+.+.....|+..... |.. .....|...|..-..++++.....+++++++. ....++..-.-|.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHH
Confidence 55443 467888888888887763 322 23456777787778889999999999998864 1222222222221
Q ss_pred -hC------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 003122 454 -SN------GLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVG 526 (846)
Q Consensus 454 -~~------g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 526 (846)
+. ...+++.++-....... .....+ +.+..+=..+...+. ..+
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~--~~~e~~~~~v~~~~~---------------~s~ 245 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERS-------------KITHSQ--EPLEELEIGVKDSTD---------------PSK 245 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhh-------------hccccc--ChhHHHHHHHhhccC---------------ccc
Confidence 11 11222222211111100 000000 000000000000000 011
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHH
Q 003122 527 EYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL-------KIPLTNQVYSSVISAYSKQGLIA 599 (846)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~ 599 (846)
.++++.....+... ..-..+-......+....++.-++. -..++..+|..-++.-...|+.+
T Consensus 246 ~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~ 314 (577)
T KOG1258|consen 246 SLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFS 314 (577)
T ss_pred hhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHH
Confidence 11222211111110 0001111112222333333333321 11234456777777777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003122 600 EAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMR 679 (846)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (846)
.+.-+|+...-. |.-=...|--.+.-....|+.+-|..++.+..+--++..+.+-..-....-..|+++.|..+++...
T Consensus 315 ~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 315 RVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred HHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 888888777641 1111344555555555557777777777766654233333333222333445678888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHhhccCC--CccchhhHHHHHHH-HHhcCCHHHHHHHHHHHHhcCC
Q 003122 680 EQDITFSDSIFFEMVLACSLLRDWKTTI---DLIKQMEPSF--HVVSIGLLNQLLHL-LGKSGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 680 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~--~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~ 753 (846)
+.-+. -...-..-+....+.|+.+.+. +++....+.. +......+...++. +.-.++.+.|..++.++.+ .
T Consensus 394 ~e~pg-~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~--~ 470 (577)
T KOG1258|consen 394 SEYPG-LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEAND--I 470 (577)
T ss_pred hhCCc-hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh--c
Confidence 64322 1222233344556777777777 4444443222 11122223333333 3345799999999999999 8
Q ss_pred CcC-HHHHHHHHHHHHhcC
Q 003122 754 EAN-FNTYSILLKNLLAAG 771 (846)
Q Consensus 754 ~p~-~~~~~~l~~~~~~~g 771 (846)
.|+ -..|..+++....++
T Consensus 471 ~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 471 LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred CCccHHHHHHHHHHHHhCC
Confidence 885 457888888855554
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=0.23 Score=49.02 Aligned_cols=160 Identities=8% Similarity=-0.056 Sum_probs=112.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCh
Q 003122 593 SKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI----ACSALMRAFNKGGQP 668 (846)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~ 668 (846)
-..|++.+|-..++++++. .+.|...+.---++|.-.|+.+.-...+++++.. -.+|.. .-..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4578889998999998875 4667888888888899999999999999998853 244432 223344466789999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhh---HHHHHHHHHhcCCHHHHHHHH
Q 003122 669 SKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGL---LNQLLHLLGKSGRIESMMKLF 745 (846)
Q Consensus 669 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~ 745 (846)
++|.+..+++.+.+.. |.-.......++...|+..++.++..+-...=......+ |-..+-.+.+.+.++.|.++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999999997754 666667788889999999999999887653322211111 112233344557888888888
Q ss_pred HHHHhcCCCc
Q 003122 746 FKIVSSGAEA 755 (846)
Q Consensus 746 ~~~~~~g~~p 755 (846)
++=+-..++.
T Consensus 271 D~ei~k~l~k 280 (491)
T KOG2610|consen 271 DREIWKRLEK 280 (491)
T ss_pred HHHHHHHhhc
Confidence 7755333444
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.37 E-value=0.29 Score=50.59 Aligned_cols=186 Identities=15% Similarity=0.087 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChh
Q 003122 599 AEAESMFNMMKMSGCSPD---VITYTAMLHAYNTAEDWEKACALFLEMETNN---IEPDSIACSALMRAFNK---GGQPS 669 (846)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~~~~~l~~~~~~---~g~~~ 669 (846)
++..+.+..+...=-.|+ ..+...++-.|....+|+.-+++.+.+.... +.-...+-..++-++.+ .|+.+
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre 199 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE 199 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH
Confidence 444445555554311222 2333455557999999999999999998631 11122333345556777 99999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH-
Q 003122 670 KVLLVAEFMREQDITFSDSIFFEMVLACSL---------LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIE- 739 (846)
Q Consensus 670 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~- 739 (846)
+|++++..++...-.++++++..++.+|-. ...+++|+..|.+.-...+..-.+ .+++..+...|.-.
T Consensus 200 ~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G--IN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 200 KALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG--INAATLLMLAGHDFE 277 (374)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch--HHHHHHHHHcCCccc
Confidence 999999997765566789999999987653 224788999999987776543333 24555555555322
Q ss_pred ---HHHHHHHH----HHhcCCC-c--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 740 ---SMMKLFFK----IVSSGAE-A--NFNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 740 ---~A~~~~~~----~~~~g~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
+..++--+ +.++|.. + |.-.+-.++.+..-.|++++|.+.+++|...
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 33333311 1233332 2 3334556667788899999999999999864
No 246
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=2.2 Score=47.19 Aligned_cols=108 Identities=10% Similarity=0.104 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
+.+--+.-+...|+..+|.++-.+.. -|+...|..-+.++...++|++-+++-+...+ +.-|.-...+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHH
Confidence 33334445666777777777666553 34677777777788888888887777776652 223456677788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 780 (846)
+.|+.++|.+++-++-. +. ....+|.+.|++.+|.+.-
T Consensus 756 ~~~n~~EA~KYiprv~~--l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG--LQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCC--hH-------HHHHHHHHhccHHHHHHHH
Confidence 88888888888777544 32 3456677777777777643
No 247
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.35 E-value=0.0035 Score=39.53 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=26.5
Q ss_pred HHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHH
Q 003122 745 FFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYI 777 (846)
Q Consensus 745 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 777 (846)
|+++++ ++| |..+|+.|+.+|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 678888 889 5669999999999999999886
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.30 E-value=0.17 Score=52.98 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=84.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 629 TAEDWEKACALFLEMETNNIEPDSI-ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTI 707 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 707 (846)
+..+..+-+++-.++++ +.||-. .|..|. --......+|.++++++++.+-. .+. -.......|.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~----~lg-~s~~~~~~g~----- 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILLA--EEEASTIVEAEELLRQAVKAGEA----SLG-KSQFLQHHGH----- 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH----hhc-hhhhhhcccc-----
Confidence 34556666666677766 566633 333222 23345678888888888764311 110 0000011111
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--CH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 708 DLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA--NF-NTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
..+.....+-.+-+.+-..|+.++.+.|+.++|++.++++++ ..| |. .+...|+.+|...+.+.++..++.+-.
T Consensus 246 -~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlk--e~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 246 -FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLK--EFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred -hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHh--hCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 111111122222334446788888899999999999999987 556 22 388889999999999999999988875
Q ss_pred HC
Q 003122 785 DA 786 (846)
Q Consensus 785 ~~ 786 (846)
+.
T Consensus 323 Di 324 (539)
T PF04184_consen 323 DI 324 (539)
T ss_pred cc
Confidence 53
No 249
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.29 E-value=0.088 Score=47.79 Aligned_cols=91 Identities=13% Similarity=0.028 Sum_probs=61.6
Q ss_pred hcCCHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCH
Q 003122 699 LLRDWKTTIDLIKQMEPSFHVVS----IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNW 773 (846)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~ 773 (846)
..|++++|..-|..+....|..+ ..+|.+-+.++.+.++++.|+....++++ +.|. ..+...-+.+|.+..++
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHhhhhH
Confidence 34444444444444433333222 33466677788888999999999999998 8884 44666667788889999
Q ss_pred HHHHHHHHHHHHCCCCCCHH
Q 003122 774 RKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 774 ~~A~~~~~~~~~~g~~p~~~ 793 (846)
++|++-|+++.+. .|...
T Consensus 185 eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 185 EEALEDYKKILES--DPSRR 202 (271)
T ss_pred HHHHHHHHHHHHh--CcchH
Confidence 9999999999873 45443
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.23 E-value=0.37 Score=50.62 Aligned_cols=103 Identities=11% Similarity=0.033 Sum_probs=48.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccC-CCccchhhHHHHHHHHH-
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDIT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPS-FHVVSIGLLNQLLHLLG- 733 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~- 733 (846)
.|..++.+.|+.+||++.++++++..+. ....+...++.++...+.+.++..++.+.... .|..-..+|...+-...
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 3444455555555555555555543222 12234444555555555555555555554322 12211222222111111
Q ss_pred -----------hcC---CHHHHHHHHHHHHhcCCCcCHHHHH
Q 003122 734 -----------KSG---RIESMMKLFFKIVSSGAEANFNTYS 761 (846)
Q Consensus 734 -----------~~g---~~~~A~~~~~~~~~~g~~p~~~~~~ 761 (846)
+.| --..|.+.+.++++ .+|.+.-|.
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAve--fNPHVp~YL 383 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVE--FNPHVPKYL 383 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHH--hCCCCchhh
Confidence 111 12346788888888 788766653
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.19 E-value=0.06 Score=45.07 Aligned_cols=92 Identities=16% Similarity=0.010 Sum_probs=52.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHH
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ-DITFSDSIFFEMVLACSLLRDWK 704 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 704 (846)
++...|+.+.|++.|.+.+.. .+.....|+.-..++.-+|+.++|++-++++++. |.+ ...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trt---------------- 113 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRT---------------- 113 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chH----------------
Confidence 445556666666666666652 2234556666666666666666666666666652 222 110
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003122 705 TTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS 751 (846)
Q Consensus 705 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 751 (846)
.-.+|..-+..|...|+-+.|+.-|+.+.+.
T Consensus 114 ----------------acqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 114 ----------------ACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred ----------------HHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 1123445555667777777777777777763
No 252
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.09 E-value=2.1 Score=44.30 Aligned_cols=137 Identities=10% Similarity=0.081 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNN-IEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVL 695 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 695 (846)
...|..+++.-.+..-.+.|..+|-++.+.| +.++..++++++.-+ ..|++.-|..+|+--+..-++ +.........
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPD-STLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 4567777777777777888888998888877 567777888888755 467888888888877764332 3444455566
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 696 ACSLLRDWKTTIDLIKQMEPSFHV-VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
.+...++-..|..+|+...+.-.. .-..+|..++.--..-|++..+..+=+++.+ ..|.-
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcH
Confidence 677888888888888854322111 1245677777777778888888888888888 77743
No 253
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.09 E-value=0.34 Score=43.57 Aligned_cols=70 Identities=14% Similarity=0.282 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 003122 302 THNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLA-----EGLKPNIVS 374 (846)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 374 (846)
+...++..+...|++++|..+.+.+....|. |...|..+|.+|...|+..+|.+.|+++.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~---~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY---DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445566666777777777777777766654 666777777777777777777777766643 266665543
No 254
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.97 E-value=0.37 Score=44.53 Aligned_cols=177 Identities=16% Similarity=0.084 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 003122 596 GLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 673 (846)
|-..-|.--|.+.+. +.|+ +..||.|+--+...|+++.|.+.|+...+. .|. ..+...-+-++.-.|++.-|.+
T Consensus 79 GL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHH
Confidence 344444444444444 3454 556666666666667777777777776663 332 2222222223444566776666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLI-KQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG 752 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 752 (846)
-+.+.-+.++. |+ .-...+..-...-+..+|..-+ ++.... +-..|...+-.|.- |++.+ +.+++++..
T Consensus 155 d~~~fYQ~D~~-DP-fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a-- 224 (297)
T COG4785 155 DLLAFYQDDPN-DP-FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKISE-ETLMERLKA-- 224 (297)
T ss_pred HHHHHHhcCCC-Ch-HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhccH-HHHHHHHHh--
Confidence 66555554432 11 1111111122333445554332 333222 11223322222221 11111 112223222
Q ss_pred CCcC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 753 AEAN--------FNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 753 ~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
...| ..+|..|+.-|...|..++|..+|+-++..
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1111 137888899999999999999999877653
No 255
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.96 E-value=3.8 Score=46.10 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhc---C-CHHHHHHHHHHHHHCC
Q 003122 737 RIESMMKLFFKIVSSGAEANFNTYSILLKNLLAA---G-NWRKYIEVLQWMEDAG 787 (846)
Q Consensus 737 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g-~~~~A~~~~~~~~~~g 787 (846)
+.+.+...+.++.. .-+......|+++|... + .++.|...|.++.+.+
T Consensus 454 ~~~~~~~~~~~a~~---~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 454 TLERAFSLYSRAAA---QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred chhHHHHHHHHHHh---ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 44455555555443 22344555555554433 2 2556666666665543
No 256
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.95 E-value=1.7 Score=41.94 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=30.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 343 IIHLYSVNGQIENCKGVFNTMLAEGLKPN---IVSYNALMAAYASHGMSKEALSVFNEIKK 400 (846)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (846)
+.+.|.+.|.+..|..-+++|++. .+-+ ...+-.+..+|...|..++|...-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445566666666666666666654 1111 12344555666666666666665554444
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=1.7 Score=41.23 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 003122 410 YTSLLNAYGRSQQPVKAREVFNMMR 434 (846)
Q Consensus 410 ~~~ll~~~~~~g~~~~A~~~~~~m~ 434 (846)
|.--..+|-...++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3334445566666666666555544
No 258
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=1 Score=44.25 Aligned_cols=143 Identities=15% Similarity=0.068 Sum_probs=77.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 627 YNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTT 706 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 706 (846)
....|++.+|..+|....+.. +-+...-..++.+|...|+.+.|..++..+-.............-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 445666777777777666531 2224455566667777777777777776654322111111111223334444444333
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCC
Q 003122 707 IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGN 772 (846)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 772 (846)
.++-.++. .+|. +...-..++..+...|+.++|.+.+-.++++...- |...-..|+..+..-|.
T Consensus 223 ~~l~~~~a-adPd-d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 223 QDLQRRLA-ADPD-DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 33333332 3343 45556677777777888888877777777643322 44455556666555553
No 259
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.63 E-value=5.6 Score=45.58 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHH-hCCCCCC--hHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 003122 281 YSKALSYFELMK-GTNIRPD--TTTHNIVIYCLV-KLGQYDKAIDLFHSMR 327 (846)
Q Consensus 281 ~~~A~~~~~~m~-~~~~~~~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~ 327 (846)
+..|++.++-+. +..+.|. ..++-.++..+. ...++++|+..+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~ 87 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAI 87 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555544 2222221 223333444443 3455555555555544
No 260
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=5.6 Score=44.86 Aligned_cols=184 Identities=11% Similarity=0.124 Sum_probs=116.8
Q ss_pred cCCCCHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 003122 122 FARKNFPFLIKEITQRGAINHSNQVFNWMKNQKNYCAR--NDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYN 199 (846)
Q Consensus 122 ~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (846)
+.+.++...+..+.+...+..|+.+-+.-. ..++ ..+.....+-+.+.|++++|..-|-+.... +.| .
T Consensus 332 L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s 401 (933)
T KOG2114|consen 332 LIEKDLETKLDILFKKNLYKVAINLAKSQH----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----S 401 (933)
T ss_pred eeeccHHHHHHHHHHhhhHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----H
Confidence 556667777888888888888887765321 1111 123344455666889999998888766542 122 2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCC
Q 003122 200 ALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGA 279 (846)
Q Consensus 200 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 279 (846)
.+|.-|....+...-...++.+.+.|+. +..--..|+.+|.+.++.+.-.+..+... .|.. ..-....+..+.+.+
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 3455566666677777788888888765 44445778889999998887766665543 2221 112345566667777
Q ss_pred CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 280 QYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMR 327 (846)
Q Consensus 280 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 327 (846)
-.++|..+-..... +......++ -..|++++|++.+..+.
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 77777766665543 233333333 35688888888887763
No 261
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.50 E-value=0.39 Score=41.88 Aligned_cols=64 Identities=14% Similarity=0.060 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003122 620 YTAMLHAYNTAEDWEKACALFLEMETNNIEP---DSIACSALMRAFNKGGQPSKVLLVAEFMREQDIT 684 (846)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 684 (846)
+..-+....+.|++++|++.|+.+... .+. ...+-..|+.+|.+.|++++|+..+++.++..|.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 333444455678888888888888874 121 2445667788888888888888888888886654
No 262
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=5.6 Score=44.27 Aligned_cols=90 Identities=17% Similarity=0.108 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHH
Q 003122 684 TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSIL 763 (846)
Q Consensus 684 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 763 (846)
....-+...-+.-+...|+..+|.++-++..-. +-..|-.-+.++...+++++-++..+... .+.-|.-.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fkip----dKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIP----DKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcCCc----chhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 334445555666677778888888877765422 44566667777888888887655544322 13445556
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 003122 764 LKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~ 783 (846)
..++.++|+.+||.+++-+.
T Consensus 751 Ve~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHHhcccHHHHhhhhhcc
Confidence 67788888888888887665
No 263
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.41 E-value=4.9 Score=47.17 Aligned_cols=190 Identities=15% Similarity=0.147 Sum_probs=111.8
Q ss_pred hcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 559 RLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACA 638 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (846)
.+.++.+-+-++++..+. +++..-|. |+. ..|++++|+.-+.++- ...|.-..+.-.++|.+.+|+.
T Consensus 863 SqkDPkEyLP~L~el~~m--~~~~rkF~--ID~--~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ 929 (1265)
T KOG1920|consen 863 SQKDPKEYLPFLNELKKM--ETLLRKFK--IDD--YLKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALA 929 (1265)
T ss_pred hccChHHHHHHHHHHhhc--hhhhhhee--HHH--HHHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhh
Confidence 345555555566655532 22222221 222 2355666666555443 1123333344456677777766
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCC
Q 003122 639 LFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH 718 (846)
Q Consensus 639 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 718 (846)
++..=.+ .-...|.+...-+...+.+++|.-.|+..-+. ...+.+|...|+|.+|+.+..++.....
T Consensus 930 ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~d 996 (1265)
T KOG1920|consen 930 LYKPDSE----KQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKD 996 (1265)
T ss_pred eeccCHH----HHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHH
Confidence 5432221 11335566666777788888888888866431 2345678889999999999988765433
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 719 VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 719 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
. ....-..|..-+...++.-+|-++..+... +|.- -...|++.-.|++|+.+-...
T Consensus 997 e-~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 997 E-LVILAEELVSRLVEQRKHYEAAKILLEYLS---DPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred H-HHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 3 222235677778888888888888877764 3321 233467777888888765544
No 264
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.15 E-value=2.8 Score=39.07 Aligned_cols=176 Identities=12% Similarity=0.057 Sum_probs=106.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 627 YNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 705 (846)
|-..|-+.-|.--|.+... +.|+ +.+||.|+--+...|+++.|.+.|+...+.++.-+ .+...-+.++.-.|+++-
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHh
Confidence 4445666667767777776 7787 66888888888999999999999999999887633 333344445667789999
Q ss_pred HHHHHHhhccCCCccchhhHHHHHHHHHhcC--CHHHHHHHH-HHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 706 TIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG--RIESMMKLF-FKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQW 782 (846)
Q Consensus 706 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~-~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 782 (846)
|.+-+.+....+|... |. .++.|.... +..+|..-+ +++.. ...+.--|+...-.+ |+..+ ..++++
T Consensus 152 Aq~d~~~fYQ~D~~DP---fR-~LWLYl~E~k~dP~~A~tnL~qR~~~--~d~e~WG~~iV~~yL---gkiS~-e~l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDDPNDP---FR-SLWLYLNEQKLDPKQAKTNLKQRAEK--SDKEQWGWNIVEFYL---GKISE-ETLMER 221 (297)
T ss_pred hHHHHHHHHhcCCCCh---HH-HHHHHHHHhhCCHHHHHHHHHHHHHh--ccHhhhhHHHHHHHH---hhccH-HHHHHH
Confidence 9988887776766633 22 233443322 555555444 44433 333333343322222 22211 223444
Q ss_pred HHHCCCCCCHH-------hHHHHHHHHHhcCCcchHHHHHH
Q 003122 783 MEDAGIQPSYG-------MFRDIVSFAQTRGGAEYAAIIQE 816 (846)
Q Consensus 783 ~~~~g~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 816 (846)
+.+ +-..+.. +|.-++..+...|+...|..+++
T Consensus 222 ~~a-~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfK 261 (297)
T COG4785 222 LKA-DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFK 261 (297)
T ss_pred HHh-hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 433 2222222 45566666777888887777665
No 265
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.15 E-value=0.043 Score=34.61 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
.+|..++.+|...|++++|+..|+++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777777 6664
No 266
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.10 E-value=0.12 Score=46.54 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 003122 738 IESMMKLFFKIVSSGAEANF-NTYSILLKNLLAAGN-----------WRKYIEVLQWMEDAGIQPSYGMFRDIVSF 801 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 801 (846)
+++|+.=|++++. ++|+. .++..++.+|...|. +++|...|+++.+ .+|+...|+.-+..
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHH
Confidence 3566666777777 77753 477777777665543 4556666666655 56777766655544
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.09 E-value=4.4 Score=41.06 Aligned_cols=102 Identities=9% Similarity=0.133 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003122 301 TTHNIVIYCLVKLGQYD---KAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNA 377 (846)
Q Consensus 301 ~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 377 (846)
.++..++.+|...+..+ +|..+++.+....++ ....+..-++.+.+.++.+++.+.+.+|+..- .-....+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~---~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN---KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC---CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 35566677777666544 455555555443332 24455555666666777888888888887652 112223444
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 378 LMAAY---ASHGMSKEALSVFNEIKKNGLCPDI 407 (846)
Q Consensus 378 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~ 407 (846)
.+..+ .. .....|...+..+....+.|..
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 34333 22 2334555566555544444433
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.09 E-value=0.041 Score=37.27 Aligned_cols=31 Identities=29% Similarity=0.269 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDIT 684 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 684 (846)
++..+..+|...|++++|+++|+++++..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555554443
No 269
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.06 E-value=1.7 Score=38.60 Aligned_cols=127 Identities=13% Similarity=0.109 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003122 126 NFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAH 205 (846)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 205 (846)
....++..+.+.+.......+++++...+ +.++...+.++..|++.+ ..+..+.+.. ..+.......++.|
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence 35567777777788888999999888764 467778899999998764 3344444442 12333344566777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 003122 206 GRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGST-GNWREALKVCKKMTENGVGPDLVTHNIVLSAYK 276 (846)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 276 (846)
.+.+.++++.-++..+.. +...+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777777777777766532 22233333333 6677776666541 24556666665544
No 270
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.05 E-value=0.81 Score=49.29 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 003122 231 STYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCL 310 (846)
Q Consensus 231 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 310 (846)
.-.+.++.-+-+.|..+.|+++...-. .-.....+.|+++.|.++.++. .+...|..|.+..
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 335556666666666666666532211 1233345556666666554442 2555666777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 311 VKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKE 390 (846)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 390 (846)
.+.|+++-|.+.|.+.. | +..|+-.|.-.|+.+...++.+.....| -++....++.-.|+.++
T Consensus 358 L~~g~~~lAe~c~~k~~--------d---~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK--------D---FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEE 420 (443)
T ss_dssp HHTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHH
T ss_pred HHcCCHHHHHHHHHhhc--------C---ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHH
Confidence 77777777777666553 1 4555556666666666666666555544 13333444445566666
Q ss_pred HHHHHHH
Q 003122 391 ALSVFNE 397 (846)
Q Consensus 391 A~~~~~~ 397 (846)
..+++.+
T Consensus 421 cv~lL~~ 427 (443)
T PF04053_consen 421 CVDLLIE 427 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 271
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.03 E-value=0.22 Score=45.28 Aligned_cols=92 Identities=15% Similarity=0.042 Sum_probs=50.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPD-----SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL 700 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 700 (846)
-+...|++++|..-|.++++. +++. .+.|..-..++.+.+.++.|++-..++++.++. ....+..-+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 345667777777777777763 2222 234444455666777777777777777776654 222233333444444
Q ss_pred CCHHHHHHHHHhhccCCCc
Q 003122 701 RDWKTTIDLIKQMEPSFHV 719 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~ 719 (846)
.++++|+.=|+++.+..|.
T Consensus 182 ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhHHHHHHHHHHHHHhCcc
Confidence 4455555555544444443
No 272
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.27 Score=46.24 Aligned_cols=82 Identities=15% Similarity=0.060 Sum_probs=52.0
Q ss_pred hcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCCHHHHH
Q 003122 699 LLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGNWRKYI 777 (846)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~ 777 (846)
...++..|+..|.++...+|. .+..|.+-+-.+.+..+++.+..--.++++ +.||.+ ..+.++.++.....+.+|+
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred chhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 334455566666555555555 334555666666666777777777777777 777655 5666666666666777777
Q ss_pred HHHHHH
Q 003122 778 EVLQWM 783 (846)
Q Consensus 778 ~~~~~~ 783 (846)
..++++
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 777766
No 273
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.92 E-value=0.05 Score=34.25 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
.+|..++..+...|++++|++.|+++++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 3566677777777777777777777777 6664
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.90 E-value=6.1 Score=41.75 Aligned_cols=63 Identities=10% Similarity=0.058 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITF---SDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
..+|..++..+.+.|+++.|...+..+...+... .+......+..+...|+..+|+..++...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456666666667777777776666666533211 33444555666666666666666665544
No 275
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=3.5 Score=38.93 Aligned_cols=19 Identities=0% Similarity=0.174 Sum_probs=10.9
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 003122 732 LGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~ 750 (846)
-...+++.+|+.+|++...
T Consensus 164 aa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666554
No 276
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.78 E-value=0.74 Score=49.59 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=80.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 003122 348 SVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAR 427 (846)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 427 (846)
.-.|+++++.++.+.-.-.. ..+....+.++..+.+.|..+.|+.+..+-. .-.....+.|+++.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIAL 338 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHH
Confidence 34556666555543111000 0113345666666777777777776653321 2234455667777776
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 003122 428 EVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRD 507 (846)
Q Consensus 428 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 507 (846)
++.++. .+...|..|.+...+.|+++-|.+.|++... +..|+-.|...|+.+...++.......|
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 654432 2566777777777777777777777766543 3455555666666666666666655553
Q ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 508 IKLNTVAYNSAIGSYMNVGEYEKAIALYKC 537 (846)
Q Consensus 508 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 537 (846)
- +|....++.-.|++++..+++.+
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 34444445555666665555543
No 277
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.75 E-value=0.18 Score=45.47 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 738 IESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
+++|...|+++.+ .+|++..|..-+... .+|-++..++.+.+..
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 5778888899998 999999998666544 3466666666665543
No 278
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.67 E-value=0.46 Score=40.97 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHHH
Q 003122 226 VAPSRSTYNNLINACGSTGNWREALKVCKKMTEN-GVGPDLVTHNIVLSA 274 (846)
Q Consensus 226 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~ 274 (846)
..|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3456666666666666666666666666655433 444455555555543
No 279
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.55 E-value=0.67 Score=40.00 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-------------cCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 003122 301 TTHNIVIYCLVKLGQYDKAIDLFHSMRE-------------KRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAE- 366 (846)
Q Consensus 301 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 366 (846)
.++..++.++++.|+++....+++..-. .+....|+..+..+++.+|+..|++..|.++++...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 3444555555555555555555544321 12222344444444444444444444444444444332
Q ss_pred CCCCCHHHHHHHHH
Q 003122 367 GLKPNIVSYNALMA 380 (846)
Q Consensus 367 g~~p~~~~~~~li~ 380 (846)
+++.+...|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 33333444444443
No 280
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.47 E-value=0.21 Score=49.25 Aligned_cols=93 Identities=11% Similarity=-0.044 Sum_probs=55.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRD 702 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 702 (846)
++-|.++|.+++|+..|.+.+. +.| |++++..-..+|.+..++..|..-.+.++..+-. -...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhh
Confidence 5667778888888888877776 455 6777777777788777777777766666653311 12233333333334444
Q ss_pred HHHHHHHHHhhccCCCc
Q 003122 703 WKTTIDLIKQMEPSFHV 719 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~~~ 719 (846)
..+|.+-++......|.
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 44444444444444444
No 281
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.32 E-value=2.7 Score=37.29 Aligned_cols=124 Identities=11% Similarity=0.189 Sum_probs=63.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCC
Q 003122 200 ALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGA 279 (846)
Q Consensus 200 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 279 (846)
.++..+.+.+........++.+.+.+. .+...++.++..|++.+. ....+.+.. . .+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 455555555666666666666666553 455566666666665432 222233221 1 23334444666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 003122 280 QYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKL-GQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYS 348 (846)
Q Consensus 280 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 348 (846)
.++++.-++..+.. +...+..+... ++++.|.+.+.+.. +...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~--------~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN--------NPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC--------CHHHHHHHHHHHH
Confidence 66666666665531 11122223333 66666666665421 4445655555443
No 282
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.27 E-value=0.035 Score=35.01 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=19.4
Q ss_pred HhhccCCCccchhhHHHHHHHHHhcCCHHHHH
Q 003122 711 KQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM 742 (846)
Q Consensus 711 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 742 (846)
+++.+.+|. ++.+|+.|+.+|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 444445555 5666667777777777776664
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.19 E-value=0.1 Score=33.39 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 759 TYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 759 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
+|..|+.+|.+.|+|++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677888888888888888888854
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.05 E-value=2.9 Score=38.46 Aligned_cols=91 Identities=11% Similarity=-0.006 Sum_probs=51.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCC--ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC--HHHHHHHHHHHH
Q 003122 693 MVLACSLLRDWKTTIDLIKQMEPSFH--VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN--FNTYSILLKNLL 768 (846)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~ 768 (846)
++..+...|++++|+.-++....... .....+-..|+......|.+|+|...++...+ ++ ......-++++.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~----~~w~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE----ESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----ccHHHHHHHHhhhHHH
Confidence 33445566666666666664432211 11122234566667777777777777665544 22 223334466677
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 003122 769 AAGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 769 ~~g~~~~A~~~~~~~~~~g 787 (846)
..|+-++|...|+++++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777777654
No 285
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.91 E-value=3.6 Score=35.05 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
.-+..+...|+-+.-.+++..+.+ .-++++.....++.+|.+.|+..+|-++++++-+.|++
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344555666776766666666653 24566667777777777777777777777777777653
No 286
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.90 E-value=18 Score=42.93 Aligned_cols=257 Identities=17% Similarity=0.186 Sum_probs=130.9
Q ss_pred CcCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHH
Q 003122 439 KPNLVSYSALIDAYGSNG--LLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYN 516 (846)
Q Consensus 439 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 516 (846)
.|+ .....+|..|.+.+ .+++|+....+...... . ......+..++- +..+..+|+.++..- | .=.
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~--~-~~ad~al~hll~---Lvdvn~lfn~ALgtY---D--l~L 855 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQV--A-VSADEALKHLLF---LVDVNELFNSALGTY---D--LDL 855 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc--c-hhHHHHHHHHHh---hccHHHHHHhhhccc---c--hHH
Confidence 455 34455777888877 67777777777665211 1 111111111111 112222222222100 0 001
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 517 SAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG 596 (846)
Q Consensus 517 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 596 (846)
+++-+-..+.++.+-+-+++++.+. .++..-| .|+ ...++++.|+..+..+-. ..|.-.++.--+.|
T Consensus 856 al~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID--~~L~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~ 922 (1265)
T KOG1920|consen 856 ALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKF--KID--DYLKRYEDALSHLSECGE-------TYFPECKNYIKKHG 922 (1265)
T ss_pred HHHHHHHhccChHHHHHHHHHHhhc--hhhhhhe--eHH--HHHHHHHHHHHHHHHcCc-------cccHHHHHHHHhcc
Confidence 2333444556667766666666642 2222111 122 224566777666655431 12223333344566
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003122 597 LIAEAESMFNMMKMSGCSPDVI----TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVL 672 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 672 (846)
.+++|+.++. |+.. .|.+...-+...+.+++|.-+|+..-+ ..--+.+|..+|+|.+|+
T Consensus 923 Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 923 LYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREAL 985 (1265)
T ss_pred cchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHH
Confidence 6777766553 3433 444444555566777777776666532 122355677778888887
Q ss_pred HHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 673 LVAEFMREQDITFSDSIF---FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIV 749 (846)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 749 (846)
.+..++..- ..... ..|+.-+..+++.-+|-++.+...... . .....|++...|++|.+.....-
T Consensus 986 ~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~-~-------~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 986 SLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP-E-------EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH-H-------HHHHHHhhHhHHHHHHHHHHhcc
Confidence 777766531 12222 456666777777777777776655321 1 33445666667777766665543
No 287
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.85 E-value=0.48 Score=45.68 Aligned_cols=118 Identities=17% Similarity=0.214 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 003122 192 KPDAETYNALISAHGRA-----GQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLV 266 (846)
Q Consensus 192 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 266 (846)
..|-.+|...+..+... +.++---..+..|.+.|+..|..+|+.|++.+-+..- .|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 35666666666655432 4455555556666666776677777766665533221 111 1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 003122 267 THNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQY-DKAIDLFHSMRE 328 (846)
Q Consensus 267 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~ 328 (846)
.+..+.-.|- .+-+-++.++++|...|+.||..+-..|+.++.+.|-. .+...+.-+|.+
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 1111111111 22345788999999999999999999999998877653 344555555543
No 288
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.73 E-value=15 Score=41.49 Aligned_cols=13 Identities=0% Similarity=0.059 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHh
Q 003122 738 IESMMKLFFKIVS 750 (846)
Q Consensus 738 ~~~A~~~~~~~~~ 750 (846)
+..|.++++++.+
T Consensus 525 ~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 525 LHLAKRYYDQASE 537 (552)
T ss_pred hHHHHHHHHHHHh
Confidence 5666666666665
No 289
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.63 E-value=12 Score=39.94 Aligned_cols=97 Identities=11% Similarity=0.127 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 579 PLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSAL 658 (846)
Q Consensus 579 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 658 (846)
+.|.....+++..+...-..+-.+.+..+|+.-| .+-..|..++.+|... .-++-..+|+++.+..+ .|.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4455555555666655555555555566665532 3455555666666555 33555556665555321 122222233
Q ss_pred HHHHHhcCChhHHHHHHHHHHH
Q 003122 659 MRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
+.-| ..++.+.+..+|.+++.
T Consensus 139 a~~y-Ekik~sk~a~~f~Ka~y 159 (711)
T COG1747 139 ADKY-EKIKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-HHhchhhHHHHHHHHHH
Confidence 3333 33555556666655554
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.62 E-value=0.7 Score=45.70 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHhH
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED-----AGIQPSYGMF 795 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~ 795 (846)
..++..++..+...|+.+.+...+++.+. ..| |-..|..++.+|.+.|+...|+..|+++.. .|+.|.+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 44667888999999999999999999999 999 788999999999999999999999998755 5787877654
Q ss_pred HHHH
Q 003122 796 RDIV 799 (846)
Q Consensus 796 ~~l~ 799 (846)
....
T Consensus 231 ~~y~ 234 (280)
T COG3629 231 ALYE 234 (280)
T ss_pred HHHH
Confidence 4443
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.54 E-value=0.15 Score=32.64 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+|..|+.+|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999765
No 292
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.16 E-value=0.53 Score=46.63 Aligned_cols=95 Identities=7% Similarity=-0.047 Sum_probs=66.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 003122 658 LMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR 737 (846)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 737 (846)
-+.-|.++|++++|+..|...+...+. ++..+..-+.+|.+...+..|..-...+...+.. -+.+|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhh
Confidence 356688888888888888888775443 6666777777777777777777666655544333 34555566666666777
Q ss_pred HHHHHHHHHHHHhcCCCcC
Q 003122 738 IESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p~ 756 (846)
..+|.+-++.+++ ++|+
T Consensus 181 ~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHHhHHHHHh--hCcc
Confidence 7888888888877 7776
No 293
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.08 E-value=11 Score=38.14 Aligned_cols=100 Identities=16% Similarity=0.083 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCH---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 549 TYTVLISSCCRLSRY---SEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 549 ~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
++..++.+|...+.. ++|..+++.+... .+....++..-++.+.+.++.+++.+.+..|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 345566666665543 3455555555433 23334555555666666777777777777777641 111223333333
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 626 AY---NTAEDWEKACALFLEMETNNIEPD 651 (846)
Q Consensus 626 ~~---~~~g~~~~A~~~~~~~~~~g~~p~ 651 (846)
.+ .. .....|...+..++...+.|.
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCC
Confidence 32 22 233456666666554334443
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.04 E-value=6.5 Score=35.35 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=53.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH--HHHHHhcCC
Q 003122 311 VKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV-SYNAL--MAAYASHGM 387 (846)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l--i~~~~~~g~ 387 (846)
.+.|..++|+.-|..+.+.+.+.-| +...........+.|+...|...|.++-.....|-.. -...| .-.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~Yp-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYP-VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3445555555555555544433111 1122222333445555555555555554433222221 11111 112334555
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003122 388 SKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRI 435 (846)
Q Consensus 388 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 435 (846)
+++.....+-+-..+.+.....-.+|.-+-.+.|++.+|...|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555555444444333222233334444444555555555555555543
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.02 E-value=0.24 Score=31.13 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 758 NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
.+|..++.+|...|++++|+..++++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4788999999999999999999999987 4554
No 296
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.98 E-value=5.8 Score=36.54 Aligned_cols=116 Identities=10% Similarity=-0.026 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 635 KACALFLEMETNNIEPDSI--ACSALMRAFNKGGQPSKVLLVAEFMREQDIT--FSDSIFFEMVLACSLLRDWKTTIDLI 710 (846)
Q Consensus 635 ~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 710 (846)
+.....+++....-..... +-..+...+...|++++|...++..+..--+ .....-..++.+....|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555556665531111111 1223455678889999999988888753211 01122345666788889999999998
Q ss_pred HhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003122 711 KQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG 752 (846)
Q Consensus 711 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 752 (846)
+........ ...-..-+.++...|+.++|+..|+++++++
T Consensus 150 ~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 150 DTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 887655332 2234466788999999999999999999843
No 297
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.93 E-value=0.66 Score=44.74 Aligned_cols=105 Identities=18% Similarity=0.302 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 003122 335 PDIVTFTSIIHLYSV-----NGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVS 409 (846)
Q Consensus 335 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 409 (846)
.|-.+|.+.+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..- .|...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv- 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV- 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH-
Confidence 355566666655543 35677777777788888888888888888777644221 11111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCH
Q 003122 410 YTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLL 458 (846)
Q Consensus 410 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 458 (846)
+....--| -.+-+-+++++++|..+|+.||..+-..|++++.+.+-.
T Consensus 128 fQ~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 11111111 123345778888888888888888888888888776653
No 298
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.86 E-value=9.6 Score=36.82 Aligned_cols=240 Identities=11% Similarity=0.054 Sum_probs=122.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcC
Q 003122 525 VGEYEKAIALYKCMKKRKVMPDS---VTYTVLISSCCRLSRYSEALGFLDEMMDL-----KIPLTNQVYSSVISAYSKQG 596 (846)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g 596 (846)
..++++|+.-|++.++....-.. .....++....+.+++++.+..+.+++.. ...-+....+++++.-+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34667777777776654211122 23344566667777777777777766521 01234445566666555555
Q ss_pred CHHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCC-------HHHHHHHHH
Q 003122 597 LIAEAESMFNMMKM----S-GCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNI----EPD-------SIACSALMR 660 (846)
Q Consensus 597 ~~~~A~~~~~~~~~----~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----~p~-------~~~~~~l~~ 660 (846)
+.+--.++|+.-+. . +-..-..|-.-|...|...+.+.+-.++++++...-- .-| ..+|..=+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 55544444443322 1 0011122335666777777777777777777654210 111 335666677
Q ss_pred HHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHH----HHHHHHhcCCHHHHH-HHHHhh---ccCCCccchhh--HHHHH
Q 003122 661 AFNKGGQPSKVLLVAEFMREQ-DITFSDSIFFE----MVLACSLLRDWKTTI-DLIKQM---EPSFHVVSIGL--LNQLL 729 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~----l~~~~~~~g~~~~A~-~~~~~~---~~~~~~~~~~~--~~~l~ 729 (846)
.|..+.+-.+-..+|++++.. ..-|.+.+... -+....+.|+|++|- ++|+.. .+.+......+ |..|+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 777777777777788877752 22233333321 222344667777765 333333 22222212222 44556
Q ss_pred HHHHhcC----CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC
Q 003122 730 HLLGKSG----RIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAG 771 (846)
Q Consensus 730 ~~~~~~g----~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 771 (846)
.++.++| +-.+|. -..-+|...+...|+.+|.+..
T Consensus 280 NMLmkS~iNPFDsQEAK-------PyKNdPEIlAMTnlv~aYQ~Nd 318 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK-------PYKNDPEILAMTNLVAAYQNND 318 (440)
T ss_pred HHHHHcCCCCCcccccC-------CCCCCHHHHHHHHHHHHHhccc
Confidence 6666665 222221 1012344556777777776543
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.81 E-value=0.26 Score=30.86 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 758 NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
..|..++.+|...|++++|++.++++++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 4678899999999999999999999987 4443
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.79 E-value=15 Score=38.80 Aligned_cols=168 Identities=7% Similarity=-0.038 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHH
Q 003122 616 DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP---DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFS--DSIF 690 (846)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~ 690 (846)
...+|..++..+.+.|+++.|...+.++...+... ++.....-+..+...|+..+|+..++..++...... ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 36688889999999999999999999988743111 334455556778888999999999988887222211 0000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCcC-HHHHHHH
Q 003122 691 FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS------GRIESMMKLFFKIVSSGAEAN-FNTYSIL 763 (846)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 763 (846)
..+...... ..+... ...........-..++..++.-+... +..+++...|.++++ +.|+ ...|..+
T Consensus 225 ~~~~~~~~~--~~~~~~--~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k~~~~~ 298 (352)
T PF02259_consen 225 AELKSGLLE--SLEVIS--STNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEKAWHSW 298 (352)
T ss_pred HHHhhcccc--cccccc--ccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHHHHHHH
Confidence 001000000 000000 00000001111223445555555555 789999999999999 8885 4477777
Q ss_pred HHHHHhc----C-------------CHHHHHHHHHHHHHCCCC
Q 003122 764 LKNLLAA----G-------------NWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 764 ~~~~~~~----g-------------~~~~A~~~~~~~~~~g~~ 789 (846)
+..+.+. . ....|+.-|-+....|-+
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7654332 1 113477777777765543
No 301
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.70 E-value=0.18 Score=31.63 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+|..++..|...|++++|...|+++++ +.||
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~--~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE--LNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 456666677777777777777777766 5553
No 302
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.69 E-value=23 Score=40.71 Aligned_cols=193 Identities=11% Similarity=0.049 Sum_probs=91.4
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHhcCChhHHHHHHH--------HHHHCCCCCCHHHHH
Q 003122 628 NTAEDWEKACALFLEMETNN-IEPD-------SIACSALMRAFNKGGQPSKVLLVAE--------FMREQDITFSDSIFF 691 (846)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~g-~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~ 691 (846)
+-.+++.+|....+.|.+.. -.|+ +.++...+-.+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 45678888888888877521 1111 2222222223445688888888887 333444332222221
Q ss_pred H--HHHHHHhcCC--HHH--HHHHHHhhccC---CCccchhhHHHH-HHHHHhc--CCHHHHHHHHHHHHhcC--CCcCH
Q 003122 692 E--MVLACSLLRD--WKT--TIDLIKQMEPS---FHVVSIGLLNQL-LHLLGKS--GRIESMMKLFFKIVSSG--AEANF 757 (846)
Q Consensus 692 ~--l~~~~~~~g~--~~~--A~~~~~~~~~~---~~~~~~~~~~~l-~~~~~~~--g~~~~A~~~~~~~~~~g--~~p~~ 757 (846)
. ++.++...+. ..+ ..++++.+.+. .+......++.+ ..++... -...++...+.+.++.- ...+.
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 1 2222322222 222 55666655432 222233333333 3333321 23456666666665521 11121
Q ss_pred H----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HHhHHHH-----HHHHHhcCCcchHHHHHHHHHHH
Q 003122 758 N----TYSILLKNLLAAGNWRKYIEVLQWMEDAGI-QPS--YGMFRDI-----VSFAQTRGGAEYAAIIQERIESL 821 (846)
Q Consensus 758 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~--~~~~~~l-----~~~~~~~~~~~~a~~~~~~l~~l 821 (846)
. +.+.|...+. .|+..|............- .|| ...|..+ ...+...|+.+++....+++..+
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 1 3334444455 6777765554444322111 122 2233222 34466678888888888777654
No 303
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.53 E-value=6.1 Score=33.74 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003122 302 THNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGL 368 (846)
Q Consensus 302 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 368 (846)
.....++.+.+.|+-+...+++..+... .. ++....-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~--~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EE--INPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cC--CCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344444455555555555555554321 11 3444455555555555555555555555555553
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.52 E-value=2.9 Score=37.39 Aligned_cols=52 Identities=13% Similarity=-0.068 Sum_probs=26.6
Q ss_pred HhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 698 SLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 698 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
...++.+++..++..+.-..|. .+.+-..-+..+...|++.+|+++|+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3445555555555555444444 233333444445555566666666655544
No 305
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=22 Score=39.76 Aligned_cols=121 Identities=11% Similarity=-0.017 Sum_probs=66.8
Q ss_pred HHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 003122 661 AFNKGGQPSKVLLVAEFMRE-QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIE 739 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 739 (846)
++.--|+-++|-.+.++|.. .++-....-.+.++.+|+..|+..-..+++.-...+ ++.++.-...++-++.-..+.+
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChh
Confidence 45556777777777777774 222222333456667777777766666666554422 2224333333444444455666
Q ss_pred HHHHHHHHHHhcCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 740 SMMKLFFKIVSSGAEANFN--TYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
.-..+.+-+.+. .+|... +-..|+-++.-.|. .+|+.+++.|.
T Consensus 589 ~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~ 633 (929)
T KOG2062|consen 589 QLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLT 633 (929)
T ss_pred hchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhh
Confidence 665555554442 455433 33444444555564 47777777774
No 306
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.23 E-value=13 Score=37.84 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHc--CC----CHHHHHHHHHHHHhC
Q 003122 248 EALKVCKKMTENGVGPDLVTHNIVLSAYKN--GA----QYSKALSYFELMKGT 294 (846)
Q Consensus 248 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~g----~~~~A~~~~~~m~~~ 294 (846)
+...+++.|.+.|+..+..+|-+....... .. ....|..+|+.|++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 345666777777776666555442222221 11 234566666666654
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.19 E-value=2.5 Score=39.24 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 618 ITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD--SIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
..+..++.-|++.|+.++|++.|.++.+....+. ...+..+++.....|++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455556666666666666666666665433333 22344555566666666666666555553
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.95 E-value=1.5 Score=40.68 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN--TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+..++..|.+.|++++|.+.|.++.+....+... .+..++......|+|..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566666666677777777776666644444332 455556666666666666666666544
No 309
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.89 E-value=9.1 Score=34.31 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=48.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH
Q 003122 663 NKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM 742 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 742 (846)
.+.++.+++..++..+.-..|. ....-..-+..+...|+|.+|+.+++.+....+. .+.+--.++.++...|+ ..=.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~-~p~~kALlA~CL~~~~D-~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERAPG-FPYAKALLALCLYALGD-PSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHcCC-hHHH
Confidence 3566777777777777765554 3444455566677777777777777777665554 22222223333333333 2334
Q ss_pred HHHHHHHh
Q 003122 743 KLFFKIVS 750 (846)
Q Consensus 743 ~~~~~~~~ 750 (846)
....++++
T Consensus 98 ~~A~evle 105 (160)
T PF09613_consen 98 RYADEVLE 105 (160)
T ss_pred HHHHHHHh
Confidence 44555665
No 310
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.69 E-value=2 Score=41.26 Aligned_cols=68 Identities=10% Similarity=0.083 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHhcCC-------HHHHHHHHHHHHhcCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 722 IGLLNQLLHLLGKSGR-------IESMMKLFFKIVSSGAEA-----NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~g~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
..++..+++.|...|+ +..|.+.|+++.+..-.| +....+.++..+.+.|++++|...+.++...+-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4445566666666665 345666666666643333 2346666777899999999999999999875433
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.55 E-value=10 Score=34.18 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=25.0
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+...|.+++.....+-+.......-..+-..|+-+-.+.|++..|...|..+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344445555444444443332222333334455555555555555555555544
No 312
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.93 E-value=13 Score=39.26 Aligned_cols=143 Identities=10% Similarity=-0.040 Sum_probs=90.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccC-------CCccc-hhhHHHHHH
Q 003122 659 MRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPS-------FHVVS-IGLLNQLLH 730 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~~~~~~l~~ 730 (846)
+++|.+..+...+..-.+.++...- .+..........+...|++.+|.+++-...-. -|..+ -.+||+|+-
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~-~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQ-DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcC-CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 3444444444444433333332111 13444555566777888888888887765211 11111 234688888
Q ss_pred HHHhcCCHHHHHHHHHHHHh-------cCCCcCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 731 LLGKSGRIESMMKLFFKIVS-------SGAEANF----------NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 731 ~~~~~g~~~~A~~~~~~~~~-------~g~~p~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.....|.+..+..+|.+++. .|+.|.. ...+..+-.|...|+.-.|.+.|.+.... +..+|.
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPr 370 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPR 370 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcH
Confidence 88888999999999988874 3545421 13344555688999999999999988765 667888
Q ss_pred hHHHHHHHHH
Q 003122 794 MFRDIVSFAQ 803 (846)
Q Consensus 794 ~~~~l~~~~~ 803 (846)
.|-.+..++.
T Consensus 371 lWLRlAEcCi 380 (696)
T KOG2471|consen 371 LWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHH
Confidence 8888776653
No 313
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.64 E-value=22 Score=36.37 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT----AEDWEKACALFLEMETNN 647 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 647 (846)
+..+|..+|..+...| +......|...|.. ..+..+|..+|+++.+.|
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG 143 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Confidence 3455555555444433 22233334444433 235566666666666555
No 314
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=90.58 E-value=22 Score=36.32 Aligned_cols=181 Identities=15% Similarity=0.064 Sum_probs=110.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 003122 595 QGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYN----TAEDWEKACALFLEMETNNIEPDSIACSALMRAFNK----GG 666 (846)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g 666 (846)
.+++..|...+......+ +......+...|. ...+..+|..+|..+.+.|. ......|...|.. ..
T Consensus 54 ~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 54 PPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCccc
Confidence 345555555555555432 2233333333333 34468889999998877653 3344446655554 33
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----C--CHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----c
Q 003122 667 QPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL-----R--DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK----S 735 (846)
Q Consensus 667 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 735 (846)
+..+|..+|+++.+.|..+.......++..|..- - +...|..++.++.... +......|+..|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 8899999999999988543222245555555443 1 2337888888876555 34556677766644 3
Q ss_pred CCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHCCC
Q 003122 736 GRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAG---------------NWRKYIEVLQWMEDAGI 788 (846)
Q Consensus 736 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~g~ 788 (846)
.+.++|...|.++.+.|- ......+. .+...| +...|...+..+...|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 389999999999998543 44555555 655555 55555556655555443
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.23 E-value=12 Score=32.89 Aligned_cols=55 Identities=5% Similarity=0.029 Sum_probs=34.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc
Q 003122 664 KGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV 719 (846)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 719 (846)
..++.+++..++..+.-..|+ ....-..-+..+...|+|.+|++++..+.+..+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 366777777777777665444 3333344555666777777777777777655544
No 316
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.20 E-value=0.32 Score=48.39 Aligned_cols=90 Identities=11% Similarity=0.020 Sum_probs=56.4
Q ss_pred cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCCHHHHHH
Q 003122 700 LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAAGNWRKYIE 778 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~ 778 (846)
.|.+++|++.+....+.+|. ...+|..-+.++.+.++...|++-+..+++ ++||.. .|-.-..+..-+|+|++|..
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 44556666666655555554 444555556666677777777777777777 777654 44444555666777777777
Q ss_pred HHHHHHHCCCCCCH
Q 003122 779 VLQWMEDAGIQPSY 792 (846)
Q Consensus 779 ~~~~~~~~g~~p~~ 792 (846)
.+..+.+.++.+..
T Consensus 204 dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 204 DLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHhccccHHH
Confidence 77777666655443
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.06 E-value=0.35 Score=29.92 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
.++.++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 444444445555555555555544
No 318
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.93 E-value=43 Score=38.68 Aligned_cols=196 Identities=14% Similarity=0.048 Sum_probs=96.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 003122 592 YSKQGLIAEAESMFNMMKMSGCSPD-------VITYTAMLHA-YNTAEDWEKACALFLEMETN----NIEPDSIACSALM 659 (846)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~l~ 659 (846)
.....++++|..++.++...-..|+ .-.|+.|-.. ....|+.++|.++.+..... -..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3445667777777766654311221 1233333322 23457777777777776652 1122344555666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHhcCCHH--HHHHHHHhhc----cCCCc--cchhhHH
Q 003122 660 RAFNKGGQPSKVLLVAEFMREQDITFSDSIF-----FEMVLACSLLRDWK--TTIDLIKQME----PSFHV--VSIGLLN 726 (846)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~--~A~~~~~~~~----~~~~~--~~~~~~~ 726 (846)
.+..-.|++++|..+.....+..-.-+..++ ..-..++..+|+.. +.+..+.... ...+. .-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 6666677888877777666553211122222 12223455666322 2222222221 11111 0112233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC--CcCH--H--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGA--EANF--N--TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP 790 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~~--~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 790 (846)
.+.+++.+ ++.+..-+...++.|. .|.. . .+..|+..+...|+.++|...+.++......+
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 33344333 5555555555444332 2221 1 33466777788888888888777776644433
No 319
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.67 E-value=3.9 Score=40.58 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 003122 584 VYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMET-----NNIEPDSIACSAL 658 (846)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~l 658 (846)
++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44455555666666666666666666543 33556666666666666666666666665543 4555555554444
Q ss_pred HHH
Q 003122 659 MRA 661 (846)
Q Consensus 659 ~~~ 661 (846)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
No 320
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.64 E-value=36 Score=38.92 Aligned_cols=22 Identities=18% Similarity=0.540 Sum_probs=15.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 767 LLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
++..|+|++|++.++++ ++-|.
T Consensus 515 ~~~~g~~~~AL~~i~~L---~liP~ 536 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL---DLIPL 536 (613)
T ss_dssp HHHTT-HHHHHHHHHHT---T-S-S
T ss_pred HHHcCCHHHHHHHHHhC---CCCCC
Confidence 77899999999888776 35563
No 321
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.51 E-value=29 Score=36.03 Aligned_cols=116 Identities=12% Similarity=0.068 Sum_probs=63.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc---CCHHHHHHHHHH
Q 003122 671 VLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS---GRIESMMKLFFK 747 (846)
Q Consensus 671 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~ 747 (846)
-+.+++++++.++. +......++..+.+..+.++..+.++++...+|. +..+|..++...... -.++....+|.+
T Consensus 50 klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 50 KLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 34455555554442 4444455555555555555555555555555554 455555555544331 245555555555
Q ss_pred HHhc------CC------CcC--HH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003122 748 IVSS------GA------EAN--FN---TYSILLKNLLAAGNWRKYIEVLQWMEDAGI 788 (846)
Q Consensus 748 ~~~~------g~------~p~--~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 788 (846)
++.. |. .|+ .. .+..+...+.+.|..+.|+.+++.+.+..+
T Consensus 128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 5431 11 011 11 334445557788999999999999988665
No 322
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.24 E-value=8.3 Score=40.66 Aligned_cols=42 Identities=17% Similarity=0.311 Sum_probs=30.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 348 SVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSK 389 (846)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 389 (846)
...+.++...+++..+...|.....+.++.-...|.+.|...
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 346778888888888888776666666777777777777654
No 323
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.02 E-value=28 Score=35.38 Aligned_cols=127 Identities=9% Similarity=0.147 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--c----CCHhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC---
Q 003122 530 KAIALYKCMKKRKVMPDSVTYTVLISSCCR--L----SRYSEALGFLDEMMDLKI---PLTNQVYSSVISAYSKQGL--- 597 (846)
Q Consensus 530 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 597 (846)
+.+.+++.|.+.|..-+..+|.+....... . .....|..+|+.|.+... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666666555554432222211 1 123456666666665421 1233333333322 2222
Q ss_pred -HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 598 -IAEAESMFNMMKMSGCSPD--VITYTAMLHAYNTAED--WEKACALFLEMETNNIEPDSIACSAL 658 (846)
Q Consensus 598 -~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~l 658 (846)
.+.++.+|+.+...|+..+ ......++........ ..++..+++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2445555555555554433 2222333322211111 33555666666666655554444433
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.98 E-value=25 Score=34.71 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 725 LNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 725 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++.....|.++|.+.+|.++-++++. +.| +...|..|...|...|+--.|...|+++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 44556667778888888888888888 777 666777777788888887777777776643
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.70 E-value=48 Score=37.59 Aligned_cols=105 Identities=9% Similarity=-0.009 Sum_probs=59.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 003122 131 IKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQ 210 (846)
Q Consensus 131 ~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 210 (846)
++.+.+.+.+++|+..-+..........-..++...|+.+.-.|++++|-.+.-.|.. -+...|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 5566666778888777665433211001335677777777777888888777777764 445555555555555444
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 211 WRWAMNIFDDMLRAAVAPSRSTYNNLINACGS 242 (846)
Q Consensus 211 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 242 (846)
.... +..+.......+...|..++..+..
T Consensus 439 l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 3332 2222332223456667777766655
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.61 E-value=0.72 Score=28.79 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 758 NTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+|..++..|.+.|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678889999999999999999999876
No 327
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.60 E-value=20 Score=37.11 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHh---cCCHHHHHH
Q 003122 703 WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLA---AGNWRKYIE 778 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~---~g~~~~A~~ 778 (846)
.+.-+.+++++.+.+|. +...+..++..+.+..+.++..+.+++++. ..| +...|...+..... .-.+.+...
T Consensus 47 ~E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~--~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLF--KNPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 35667788888877885 778888889999999999999999999999 788 46688877776333 234555555
Q ss_pred HHHHHHHC------CC-C--CCH---H-----hHHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q 003122 779 VLQWMEDA------GI-Q--PSY---G-----MFRDIVSFAQTRGGAEYAAIIQERIESLRM 823 (846)
Q Consensus 779 ~~~~~~~~------g~-~--p~~---~-----~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~ 823 (846)
+|.+.+.. |. . ++. . ++..++.|+...|-.+.|..+++.+.+++-
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 55543321 11 0 111 1 356667888899999999999999998764
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.99 E-value=9.1 Score=33.66 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=24.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCcCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 735 SGRIESMMKLFFKIVSSGAEANFNTYSI-LLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
.++.+++..+++.+.- +.|+...... -++.+...|+|.+|+.+++.+.+.
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4455555555555554 5554332222 233355555555555555555443
No 329
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.75 E-value=26 Score=33.43 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=7.7
Q ss_pred hcCCHhHHHHHHHHHH
Q 003122 559 RLSRYSEALGFLDEMM 574 (846)
Q Consensus 559 ~~g~~~~A~~~~~~~~ 574 (846)
+..+.++|...++..+
T Consensus 85 kk~~~~eAv~cL~~ai 100 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAI 100 (288)
T ss_pred hccChHHHHHHHHHHH
Confidence 3335555555554443
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.41 E-value=1.2 Score=29.28 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+++.|+..|...|++++|..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455666666666666666666666554
No 331
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.20 E-value=23 Score=32.23 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=16.8
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 218 FDDMLRAAVAPSRSTYNNLINACGSTGNWRE 248 (846)
Q Consensus 218 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 248 (846)
+..+.+.+++|+...+..+++.+.+.|++..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3344445555555556666666665555443
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.13 E-value=23 Score=33.40 Aligned_cols=121 Identities=10% Similarity=0.037 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccc--hhhHHHHHHHHH
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS--IGLLNQLLHLLG 733 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 733 (846)
...++.+.+.++..+|+...+.-++.+|. +...-..+.+.++-.|+|++|..-++..-...|..+ ...|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~-- 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC-- 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH--
Confidence 33455666777788888877777765554 444445566777888888888877776654444433 3445555544
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcC-----HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC
Q 003122 734 KSGRIESMMKLFFKIVSSGAEAN-----FNTYSILLKN---LLAAGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~g 787 (846)
+.+-.+.++-+..|+ ...|...+.+ +...|.-+.+..+.+.+.+.+
T Consensus 82 --------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa 135 (273)
T COG4455 82 --------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAA 135 (273)
T ss_pred --------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhC
Confidence 122233444445552 2244433322 222334444556667777654
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.66 E-value=8.6 Score=41.70 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 550 YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT 629 (846)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (846)
.+.++..+.++|-.++|+++- ..|+.. .....+.|+++.|.++..+.. +..-|..|.++...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s-------~D~d~r-----Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS-------TDPDQR-----FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC-------CChhhh-----hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 344555555666655555432 122221 122345677777766654432 56677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 630 AEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDL 709 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 709 (846)
.+++..|.+.|.+..+ |..|+-.+...|+.+.-..+-....+.|.. + .. ..+|...|++++.+++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-~A----F~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-LA----FLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-hH----HHHHHHcCCHHHHHHH
Confidence 7777777777777765 445555666667666655555555555432 1 11 2345566676666666
Q ss_pred HHh
Q 003122 710 IKQ 712 (846)
Q Consensus 710 ~~~ 712 (846)
+.+
T Consensus 744 Li~ 746 (794)
T KOG0276|consen 744 LIS 746 (794)
T ss_pred HHh
Confidence 554
No 334
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.55 E-value=6.1 Score=33.90 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHhhcc-CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 684 TFSDSIFFEMVLACSLLRD---WKTTIDLIKQMEP-SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 684 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
.++..+-+.++.++.++.+ .++.+.+++.+.+ ..|...-.+...|+-++.+.|+++.++++.+.+++ .+||+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCc
Confidence 3455555566666665544 3455566666654 44444455556666777777777777777777777 66643
No 335
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.50 E-value=1.4 Score=28.95 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 758 NTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+++.|+..|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998865
No 336
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.43 E-value=8.4 Score=30.92 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCC-cchHHHHHHHHH
Q 003122 743 KLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQTRGG-AEYAAIIQERIE 819 (846)
Q Consensus 743 ~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~-~~~a~~~~~~l~ 819 (846)
..+++.++ .+| |...-..++..|...|++++|++.+-.++...-.. +...-..++.++.-.|. ++.+.+.-.++.
T Consensus 9 ~al~~~~a--~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 9 AALEAALA--ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34555555 567 45577778888888888888888877776653222 22334555566555554 556666666655
Q ss_pred HH
Q 003122 820 SL 821 (846)
Q Consensus 820 ~l 821 (846)
.+
T Consensus 87 ~l 88 (90)
T PF14561_consen 87 SL 88 (90)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 337
>PRK10941 hypothetical protein; Provisional
Probab=86.42 E-value=8.7 Score=38.29 Aligned_cols=61 Identities=10% Similarity=-0.016 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
..++|-.+|.+.++++.|.++.+.++. +.|+ +.-+..-+-+|.+.|.+..|..-++.-++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 356888899999999999999999999 9995 557888888999999999999988888764
No 338
>PRK09687 putative lyase; Provisional
Probab=86.32 E-value=40 Score=34.08 Aligned_cols=92 Identities=15% Similarity=0.029 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003122 581 TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAE-DWEKACALFLEMETNNIEPDSIACSALM 659 (846)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 659 (846)
+..+-...+.++.+.++ .+|+..+-.++. .+|...-...+.++.+.+ ...++...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 34444444444544443 344444444443 233333333333333321 12344444444442 23444444444
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 003122 660 RAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~ 680 (846)
.++.+.|+ ..|+..+-+.++
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~ 233 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELK 233 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHc
Confidence 44544444 334444444443
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.25 E-value=3.9 Score=42.74 Aligned_cols=125 Identities=11% Similarity=-0.055 Sum_probs=76.1
Q ss_pred HHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 557 CCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKA 636 (846)
Q Consensus 557 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (846)
-...|+...|-+-+...+.. .+.++.........+...|+++.+.+.+...... +.....+...++......|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 34567777776666555543 2333444444445567788888888777655442 122345666777777777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 003122 637 CALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDIT 684 (846)
Q Consensus 637 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 684 (846)
..+-.-|+...++. +.....-....-..|-++++...|+++...+++
T Consensus 377 ~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 88888777654432 222222222334557788888888888776544
No 340
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.90 E-value=54 Score=35.22 Aligned_cols=180 Identities=11% Similarity=0.119 Sum_probs=121.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003122 544 MPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAM 623 (846)
Q Consensus 544 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 623 (846)
..|.....+++..+...-...-...+..+|+..| .+...|..++++|... ..++-..+++++.+..+ .|++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4466677788888888878888888889998854 6788899999999988 56777888888888643 355666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEPD------SIACSALMRAFNKGGQPSKVLLVAEFMRE-QDITFSDSIFFEMVLA 696 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~ 696 (846)
+..|-+ ++.+++..+|.++... +-|. ...|..|...- ..+.+.-+.+..+... .|.......+..+-.-
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 666666 8889999999998864 2231 12444444321 3556666666666664 3433334444455566
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
|....+|.+|+++++.+.+.+.. +.-+-..++.-+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 77888888888888877766555 434444444433
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.43 E-value=73 Score=36.27 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHh
Q 003122 518 AIGSYMNVGEYEKAIALYKCMK 539 (846)
Q Consensus 518 li~~~~~~g~~~~A~~~~~~~~ 539 (846)
|+..|...+++.+|+.++-...
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 5666666667777766665554
No 342
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.36 E-value=85 Score=36.98 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 003122 514 AYNSAIGSYMNVGEYEKAIALYKCMKKR 541 (846)
Q Consensus 514 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 541 (846)
.|..|+..|...|+.++|+++|.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3677888888888888888888887763
No 343
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.23 E-value=13 Score=40.50 Aligned_cols=153 Identities=14% Similarity=0.190 Sum_probs=102.0
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 003122 133 EITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWR 212 (846)
Q Consensus 133 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 212 (846)
.+.-+|+++.|-.++..+. .+.-+.+++.+-++|-.++|+++ .+|... -.....+.|+++
T Consensus 595 t~vmrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~ 654 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLD 654 (794)
T ss_pred HHhhhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHH
Confidence 3344577777766554433 23456677788888888888776 233322 123345678888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003122 213 WAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMK 292 (846)
Q Consensus 213 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 292 (846)
.|.++..+. .+..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+....+-....
T Consensus 655 iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 655 IAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 888876654 2666788899988899999988888876654 4456666777777776666666666
Q ss_pred hCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 293 GTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSM 326 (846)
Q Consensus 293 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 326 (846)
+.|.. |.. .-+|...|+++++.+++.+-
T Consensus 720 ~~g~~-N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 720 KQGKN-NLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhccc-chH-----HHHHHHcCCHHHHHHHHHhc
Confidence 66633 322 23466788999988888765
No 344
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.10 E-value=54 Score=34.53 Aligned_cols=96 Identities=9% Similarity=-0.050 Sum_probs=65.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHhhccCCCc----cchhhHHHHHHHHH
Q 003122 659 MRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLAC-SLLRDWKTTIDLIKQMEPSFHV----VSIGLLNQLLHLLG 733 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 733 (846)
+..+.+.|-+..|+++.+-+...++.-|+.....+++.| .++++++--+++++........ .-+..-...+-++.
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 456778899999999999999887776776666777765 4677788778887765442111 01223334445555
Q ss_pred hcCCH---------------HHHHHHHHHHHhcCCCcC
Q 003122 734 KSGRI---------------ESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 734 ~~g~~---------------~~A~~~~~~~~~~g~~p~ 756 (846)
..++. +.|...+.+++. .-|.
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~--~fP~ 225 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKAIL--RFPW 225 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHHHH--HhHH
Confidence 56655 889999988887 5554
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.51 E-value=9.3 Score=35.66 Aligned_cols=75 Identities=16% Similarity=0.099 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 282 SKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSEC-LPDIVTFTSIIHLYSVNGQIENCK 357 (846)
Q Consensus 282 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 357 (846)
++|.+.|-.+...+.-.++.....|+.-|. ..+.++++.++..+++....- .+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555656555554444444444444333 456666666666665543332 455666666666666666666553
No 346
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.43 E-value=4.7 Score=28.46 Aligned_cols=29 Identities=17% Similarity=0.017 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
.++-++.+.|++++|.+..+.+++ .+|++
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N 34 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDN 34 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCc
Confidence 444444555555555555555555 55543
No 347
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.39 E-value=1.5e+02 Score=38.85 Aligned_cols=152 Identities=14% Similarity=0.051 Sum_probs=95.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHh
Q 003122 447 ALIDAYGSNGLLAEAVEVFREMEQDGI--EPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMN 524 (846)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 524 (846)
.+..+-.+.+.+..|+-.++.-..... ......+..+...|+..++.++...+...... + .....-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~-~sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----D-PSLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----C-ccHHHHHHHHHh
Confidence 455566778899999999888311111 11223344455589999998888777664211 1 122344556778
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHH
Q 003122 525 VGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSS-VISAYSKQGLIAEAES 603 (846)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~ 603 (846)
.|+++.|...|+.+.+.+ ++...+++.++......|.++..+-..+-..... .+....++. =+.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999874 3346677777777777788888877666655432 333333333 3344456666666655
Q ss_pred HHH
Q 003122 604 MFN 606 (846)
Q Consensus 604 ~~~ 606 (846)
...
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 544
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.33 E-value=1.7 Score=25.99 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+|..++..+...|++++|...++++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555556666666666666666555
No 349
>PRK12798 chemotaxis protein; Reviewed
Probab=84.19 E-value=60 Score=34.23 Aligned_cols=70 Identities=10% Similarity=-0.010 Sum_probs=41.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKN-----LLAAGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
-..+|..++..-...|+.+-|....+++.. +..+...-...+.. -.-....++|.+.++.+....+.+..
T Consensus 256 q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~--L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 256 QRELYLRIARAALIDGKTELARFASERALK--LADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERD 330 (421)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH--hccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhh
Confidence 345677777777788888888888888877 33321111111111 23345577777777776655555543
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.42 E-value=7.7 Score=36.37 Aligned_cols=75 Identities=11% Similarity=0.127 Sum_probs=43.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 003122 270 IVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIH 345 (846)
Q Consensus 270 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~ 345 (846)
..++.+.+.+.+.+|+...++-.+.. +.|..+-..++..||-.|++++|...++-.-...+...+...+|..+|.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455555666666666666555443 3345555566666667777777766666665555554445555555554
No 351
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.39 E-value=46 Score=32.37 Aligned_cols=155 Identities=13% Similarity=0.103 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHhcCC
Q 003122 421 QQPVKAREVFNMMRINNLKP---NLVSYSALIDAYGSNGLLAEAVEVFREMEQD---GI--EPNIVSICTLLAACGRCGR 492 (846)
Q Consensus 421 g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~--~~~~~~~~~ll~~~~~~g~ 492 (846)
.++++|+.-|.+..+..... .......+|..+.+.|++++.++.+.+++.- .+ .-+..+.+.+++......+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 35556666666555431111 1223344566666677777766666666431 11 1223344555554444444
Q ss_pred HHHHHHHHHHHHhC-CCccCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CC-------HHHHHHHHHH
Q 003122 493 KVNIDAVLLAAEMR-DIKLNTV----AYNSAIGSYMNVGEYEKAIALYKCMKKRKVM----PD-------SVTYTVLISS 556 (846)
Q Consensus 493 ~~~a~~~~~~~~~~-~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----p~-------~~~~~~li~~ 556 (846)
.+....+++.-... .-..|.. +-..|...|...+++.+..++++++...... .| ...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 44333333322110 0000111 1234555666666666666666665542111 11 2345555666
Q ss_pred HHhcCCHhHHHHHHHHHHH
Q 003122 557 CCRLSRYSEALGFLDEMMD 575 (846)
Q Consensus 557 ~~~~g~~~~A~~~~~~~~~ 575 (846)
|....+-..-..++++.+.
T Consensus 201 YT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhhcccHHHHHHHHHHHH
Confidence 6666666666666666653
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.27 E-value=1.4 Score=27.13 Aligned_cols=29 Identities=10% Similarity=0.358 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCC
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFH 718 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 718 (846)
+..++.++...|++++|++.++++....|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34555566666666666666666655554
No 353
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.00 E-value=20 Score=34.43 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
..+...++....+.|+.++|.+.|.+++..+-.+.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 45566788888899999999999999997543333
No 354
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.90 E-value=73 Score=34.28 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 738 IESMMKLFFKIVSS-GAEANFNTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 738 ~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
+..++.+|+.|+.. | .|+..|......=...|..+.+-.++.++.
T Consensus 512 l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 512 LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 44455555555432 2 333344443333334455554444444443
No 355
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.55 E-value=2.7 Score=44.24 Aligned_cols=95 Identities=11% Similarity=-0.095 Sum_probs=48.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 003122 660 RAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIE 739 (846)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 739 (846)
.-+.+.+.++.|..++.++++.++. ....|..-..++.+.+++..|+.=..++.+..|. ...+|..-+.++...+++.
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHH
Confidence 3444556666666666666664332 2222333334555555555555555555545444 3344444455555555555
Q ss_pred HHHHHHHHHHhcCCCcCHH
Q 003122 740 SMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p~~~ 758 (846)
+|...|+.... +.|+..
T Consensus 90 ~A~~~l~~~~~--l~Pnd~ 106 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDP 106 (476)
T ss_pred HHHHHHHHhhh--cCcCcH
Confidence 55555555555 555433
No 356
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.35 E-value=17 Score=34.68 Aligned_cols=84 Identities=8% Similarity=-0.014 Sum_probs=51.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 627 YNTAEDWEKACALFLEMETNNIEPDSIA-CSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 705 (846)
|.....+..|+..|.+.+. +.|+..+ |..-+-++.+..+++.+..--.++++..+. .....+.++........+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhccccH
Confidence 4455567777777777766 5666543 334455566677777777766666664433 23334455666666666677
Q ss_pred HHHHHHhh
Q 003122 706 TIDLIKQM 713 (846)
Q Consensus 706 A~~~~~~~ 713 (846)
|+..++++
T Consensus 97 aI~~Lqra 104 (284)
T KOG4642|consen 97 AIKVLQRA 104 (284)
T ss_pred HHHHHHHH
Confidence 77666655
No 357
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.29 E-value=77 Score=34.12 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKN---LLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDI 798 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 798 (846)
..-+.+..-+.+.|-..+|+..|.+... +.| ....|..++.. ....| ...+.++|+.|... +-.|+..|...
T Consensus 461 tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg~d~~lw~~y 536 (568)
T KOG2396|consen 461 TLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FGADSDLWMDY 536 (568)
T ss_pred ehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hCCChHHHHHH
Confidence 3446778888899999999999999998 777 56677777765 33334 77788889988653 33778888888
Q ss_pred HHHHHhcCCcchHHHHHHHHHH
Q 003122 799 VSFAQTRGGAEYAAIIQERIES 820 (846)
Q Consensus 799 ~~~~~~~~~~~~a~~~~~~l~~ 820 (846)
..+-...|..+.+-.+|.+..+
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHhhccCCCcccccHHHHHHHH
Confidence 8887788888888888887765
No 358
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.24 E-value=17 Score=36.25 Aligned_cols=49 Identities=22% Similarity=0.139 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 632 DWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 632 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
+.++++.++..=++.|+-||..+++.+++.+.+.+++.+|..+...|+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666666666666555555543
No 359
>PRK09687 putative lyase; Provisional
Probab=82.23 E-value=60 Score=32.83 Aligned_cols=17 Identities=6% Similarity=-0.226 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHhcCC
Q 003122 476 NIVSICTLLAACGRCGR 492 (846)
Q Consensus 476 ~~~~~~~ll~~~~~~g~ 492 (846)
+..+-...+.++++.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 33333444444444443
No 360
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.16 E-value=5.3 Score=28.20 Aligned_cols=41 Identities=12% Similarity=0.132 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 003122 760 YSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFA 802 (846)
Q Consensus 760 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 802 (846)
.+.++-++++.|++++|....+.+++ ++|+......|...+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHH
Confidence 44566678888888888888888887 678777666665444
No 361
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.05 E-value=13 Score=34.80 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 634 EKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ---DITFSDSIFFEMVLACSLLRDWKTT 706 (846)
Q Consensus 634 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 706 (846)
++|.+.|-++...+.--++....+|+. |.-..+.++|+.++.++++. +-.+++.++..++.++...|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555554443333333333333 22344555555555555541 2234555555555555555555554
No 362
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.95 E-value=23 Score=28.84 Aligned_cols=60 Identities=10% Similarity=0.233 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 003122 213 WAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLS 273 (846)
Q Consensus 213 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 273 (846)
+..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+-++.. +......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 56666777777778888888888888888888888888888877654 1122226666654
No 363
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.64 E-value=0.26 Score=44.10 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=19.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003122 629 TAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAE 676 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 676 (846)
+.+..+....+++.+...+...+....+.++..|++.++.++.+++++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 334444444444444433322334444444444444444444444443
No 364
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.56 E-value=1.1e+02 Score=35.31 Aligned_cols=118 Identities=6% Similarity=-0.094 Sum_probs=73.8
Q ss_pred hcCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 003122 594 KQGLIAEAESMFNMMKMSG-CSPD--VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSK 670 (846)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 670 (846)
...+.+.|..++....... +.+. ..++..++......+...+|...++..... ..+......-+......++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHH
Confidence 3456788888888775432 2222 234455544444443356777777765542 2233444444555558889988
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 671 VLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 671 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
+...+..|...... ...-.+=++.++...|+.++|..+|+.+.
T Consensus 331 ~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888887653222 44555667778777899999999998874
No 365
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.27 E-value=15 Score=31.60 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=54.0
Q ss_pred ccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 719 VVSIGLLNQLLHLLGKSG---RIESMMKLFFKIVSSGAEAN--FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 719 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.++..+-.++++++.++. +..+.+.+++.+.++ -.|+ ....+.|+-++++.|+|++++.+.+..++ .+||..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 335666778999998875 677888999999862 3442 33555567779999999999999999887 456543
No 366
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.79 E-value=55 Score=32.65 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=15.7
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 003122 767 LLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~~ 786 (846)
|.-.|+...|...++...+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 77788999898887776654
No 367
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.54 E-value=8 Score=41.71 Aligned_cols=99 Identities=8% Similarity=-0.121 Sum_probs=54.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 003122 665 GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKL 744 (846)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 744 (846)
.|+...|...+..+....+.-.......++......|...+|-.++.+....... .+.++..+++++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-epl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS-EPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc-CchHHHhcchhHHHHhhhHHHHHH
Confidence 4566666666555554433333444455555555555555565555554444422 344555666666666666666666
Q ss_pred HHHHHhcCCCc-CHHHHHHHHHH
Q 003122 745 FFKIVSSGAEA-NFNTYSILLKN 766 (846)
Q Consensus 745 ~~~~~~~g~~p-~~~~~~~l~~~ 766 (846)
|+.+++ +.| +.++-+.|..+
T Consensus 699 ~~~a~~--~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALK--LTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHh--cCCCChhhHHHHHHH
Confidence 666666 566 33344444443
No 368
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.49 E-value=1.2e+02 Score=34.96 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=40.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CccCHHHHHHHHHHHHh---
Q 003122 449 IDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRD-IKLNTVAYNSAIGSYMN--- 524 (846)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 524 (846)
...+.-.|+++.|++.+.. ..+...+.+.+...+.-|.-.+-..... ..+...+ -.+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4456678999999988877 2223445555554444433222111111 1111110 01112557778888875
Q ss_pred cCCHHHHHHHHHHHhhC
Q 003122 525 VGEYEKAIALYKCMKKR 541 (846)
Q Consensus 525 ~g~~~~A~~~~~~~~~~ 541 (846)
..+..+|++.|--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35678888877766654
No 369
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.95 E-value=17 Score=36.15 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=50.1
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003122 296 IRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSEC--LPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV 373 (846)
Q Consensus 296 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 373 (846)
.+..+.+...++..-....+++.++..+-+++.. +.+ .|+ .+-.+.+..+. .-+.++++.++..=+..|+-||..
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs-~~a~~~~~-~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHS-PNAWYLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcC-cchhhhcc-ccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 3444445555555555556666676666666432 110 011 11111222222 224455555555555556666666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 374 SYNALMAAYASHGMSKEALSVFNEIK 399 (846)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (846)
+++.+|+.+.+.+++.+|..+.-.|.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 66666666666666666555554444
No 370
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=79.93 E-value=85 Score=33.13 Aligned_cols=147 Identities=14% Similarity=0.029 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 586 SSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKG 665 (846)
Q Consensus 586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 665 (846)
+-++.-|...|+-.+|.+..+++...- -.+...-.+++.+....-.-...+.++.+... -+...-..+..++.+.
T Consensus 218 n~~l~eyv~~getrea~rciR~L~vsf-fhhe~vkralv~ame~~~ae~l~l~llke~~e----~glissSq~~kGfsr~ 292 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGVSF-FHHEGVKRALVDAMEDALAEGLTLKLLKEGRE----EGLISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCCCc-hhhHHHHHHHHHHHhhhhcccceeccchhhhh----hcchhhhccccCchhh
Confidence 445556777888777777777665321 11222222333322211111112233333332 2333444555555554
Q ss_pred CC--------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 003122 666 GQ--------PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR 737 (846)
Q Consensus 666 g~--------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 737 (846)
+. ...|...|+...-..+.-+-.--+++...-...|+.+. +..|++ ....+++-|..+|+
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-----------~~~~IIqEYFlsgD 360 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-----------DLTPIIQEYFLSGD 360 (645)
T ss_pred ccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-----------hhHHHHHHHHhcCC
Confidence 32 34466666666543322110000111111123333222 222222 12367888888888
Q ss_pred HHHHHHHHHHHH
Q 003122 738 IESMMKLFFKIV 749 (846)
Q Consensus 738 ~~~A~~~~~~~~ 749 (846)
..+.++.++.+-
T Consensus 361 t~Evi~~L~DLn 372 (645)
T KOG0403|consen 361 TPEVIRSLRDLN 372 (645)
T ss_pred hHHHHHHHHHcC
Confidence 888888887543
No 371
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=79.46 E-value=50 Score=30.14 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=23.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003122 637 CALFLEMETNNIEPDSIACSALMRAFNKGGQPSKV 671 (846)
Q Consensus 637 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 671 (846)
.++++.+.+.++.|+...+..+++.+.+.|++..-
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L 48 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL 48 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34555555667777777777777777777765543
No 372
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.91 E-value=2.7 Score=42.17 Aligned_cols=88 Identities=8% Similarity=-0.156 Sum_probs=39.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 003122 666 GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLF 745 (846)
Q Consensus 666 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 745 (846)
|.+++|++.|..+++.++. ....|..-..++.+.+++..|++=+......++. +..-|-.-+.+-...|++++|...+
T Consensus 128 G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHHH
Confidence 3444444444444443322 3333333334444444444444444444444443 2222333334444456666666666
Q ss_pred HHHHhcCCCc
Q 003122 746 FKIVSSGAEA 755 (846)
Q Consensus 746 ~~~~~~g~~p 755 (846)
..+.+.++.+
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 6666644443
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.86 E-value=19 Score=35.31 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=24.8
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 696 ACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
++...++|.+++.+.-+......+..+.+...-+-.|.+.|....+.++....+.
T Consensus 92 ALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 92 ALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4444555555554444433332222333444444444555555555555554443
No 374
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.57 E-value=3.1 Score=24.15 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=9.8
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 003122 761 SILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~~~ 780 (846)
..++.++...|++++|..++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 34444455555555554444
No 375
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.34 E-value=3.2 Score=24.07 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 003122 725 LNQLLHLLGKSGRIESMMKLFF 746 (846)
Q Consensus 725 ~~~l~~~~~~~g~~~~A~~~~~ 746 (846)
...++.++...|+.++|.+.++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4466677777777777776654
No 376
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.86 E-value=1.8 Score=38.69 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=63.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 003122 658 LMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR 737 (846)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 737 (846)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++....-+. . .++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~--~-----~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDL--D-----KALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-C--T-----HHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCH--H-----HHHHHHHhcch
Confidence 4666778899999999999999876666788899999999999888888888885443222 2 77788888888
Q ss_pred HHHHHHHHHH
Q 003122 738 IESMMKLFFK 747 (846)
Q Consensus 738 ~~~A~~~~~~ 747 (846)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 8888776655
No 377
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=76.64 E-value=24 Score=28.37 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=33.7
Q ss_pred hhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---CHHHHHHHHHHHHhcCC
Q 003122 712 QMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA---NFNTYSILLKNLLAAGN 772 (846)
Q Consensus 712 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~ 772 (846)
.....+|. +..+...++..+...|++++|.+.+-++++ ..+ +...-..|+.++...|.
T Consensus 13 ~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~--~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 13 AALAANPD-DLDARYALADALLAAGDYEEALDQLLELVR--RDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHC--C-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccccccHHHHHHHHHHHHcCC
Confidence 33344555 556666777777777777777777777777 343 23355555665555555
No 378
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.59 E-value=41 Score=34.03 Aligned_cols=93 Identities=10% Similarity=-0.065 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhc---cCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH-HHHHHHH
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQME---PSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF-NTYSILL 764 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~ 764 (846)
.|-.-+.-|.+..++..|...|.+.. -.+|.++..+|++-+.+-...|++..|+.-..+++. ++|.. ..|+.-+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhh
Confidence 34444555667777777777776653 234555677788888888888999999999999999 99954 4888888
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 003122 765 KNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 765 ~~~~~~g~~~~A~~~~~~~ 783 (846)
.++....++++|..+.+..
T Consensus 161 kc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 8888888887777766554
No 379
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.89 E-value=79 Score=31.58 Aligned_cols=135 Identities=10% Similarity=0.084 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHh-cC-ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 175 QIDKARGLFFEMQK-WRCKPDAETYNALISAHGR-AG-QWRWAMNIFDDMLR-AAVAPSRSTYNNLINACGSTGNWREAL 250 (846)
Q Consensus 175 ~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~-~g~~~~~~~~~~ll~~~~~~g~~~~A~ 250 (846)
-+.+|+.+|+.... ..+-.|...-..|++.... .+ ....--++.+.+.. .|-.++..+....+..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666652211 1233455555555554443 22 22222233333322 234556666777777777777777777
Q ss_pred HHHHHHHHC-CCCCChHHHHHHHHHHHcCCCHHHHHHHHHH-----HHhCCCCCChHHHHHHHHH
Q 003122 251 KVCKKMTEN-GVGPDLVTHNIVLSAYKNGAQYSKALSYFEL-----MKGTNIRPDTTTHNIVIYC 309 (846)
Q Consensus 251 ~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-----m~~~~~~~~~~~~~~li~~ 309 (846)
++++..... +..-|...|..+|....+.|+..-...+.++ +++.++..+...-..+-..
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 777766654 5556777777777777777777766666654 2344455444444444333
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.60 E-value=6.6 Score=26.42 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 762 ILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 762 ~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.|+.+|.+.|+.+.|.++++++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 455556666666666666665553
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.95 E-value=11 Score=40.64 Aligned_cols=105 Identities=15% Similarity=0.014 Sum_probs=82.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cCHHHHHHHHHHHHh
Q 003122 691 FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAE-ANFNTYSILLKNLLA 769 (846)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~ 769 (846)
+..+......|+...|...+..+....|..+......|+..+.+.|....|-.++.+.+. +. ..+.+++.++++|..
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~--~~~sepl~~~~~g~~~l~ 688 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALA--INSSEPLTFLSLGNAYLA 688 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHh--hcccCchHHHhcchhHHH
Confidence 333333456899999999999988777766666678999999999999999999999888 44 367789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 003122 770 AGNWRKYIEVLQWMEDAGIQPSYGMFRDI 798 (846)
Q Consensus 770 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 798 (846)
..+.++|++.++.+.+.. ..++.+-+.+
T Consensus 689 l~~i~~a~~~~~~a~~~~-~~~~~~~~~l 716 (886)
T KOG4507|consen 689 LKNISGALEAFRQALKLT-TKCPECENSL 716 (886)
T ss_pred HhhhHHHHHHHHHHHhcC-CCChhhHHHH
Confidence 999999999999998752 2234444444
No 382
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=74.93 E-value=5.2 Score=42.23 Aligned_cols=93 Identities=15% Similarity=0.021 Sum_probs=75.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEPDSIACSAL-MRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRD 702 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 702 (846)
+.-+...+.++.|+.++.++++ +.||...|.+. ..++.+.+++..|+.-+.++++..+. ....|..-+.++...++
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHH
Confidence 4456677899999999999999 67875555443 47888999999999999999997755 45667777788889999
Q ss_pred HHHHHHHHHhhccCCCc
Q 003122 703 WKTTIDLIKQMEPSFHV 719 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~~~ 719 (846)
+.+|+..++......|.
T Consensus 88 ~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPN 104 (476)
T ss_pred HHHHHHHHHHhhhcCcC
Confidence 99999999998877776
No 383
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.02 E-value=1e+02 Score=30.65 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 551 TVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMK 609 (846)
Q Consensus 551 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 609 (846)
......|...|.+.+|.++.+..+..+ +.+...+-.|+..+...|+--.|..-++.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334456667777777777777777664 5666667777777777777666666665554
No 384
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.73 E-value=6.9 Score=23.05 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 759 TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 759 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.|..++..|...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 577888899999999999999998875
No 385
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.02 E-value=1.6e+02 Score=31.78 Aligned_cols=124 Identities=11% Similarity=-0.001 Sum_probs=57.4
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcC-CCCCH-----HHHHH
Q 003122 307 IYCLVKLG--QYDKAIDLFHSMREKRSECLPDIVTFTSIIHL-YSVNGQIENCKGVFNTMLAEG-LKPNI-----VSYNA 377 (846)
Q Consensus 307 i~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ 377 (846)
.+.+...| ++.++++.++......+...-.+.+-..|... +.-..+++.|...++...... .-|+. .++..
T Consensus 14 Ae~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~Sl 93 (629)
T KOG2300|consen 14 AEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASL 93 (629)
T ss_pred HHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHH
Confidence 33344444 45556666655554332211112222222222 222455666666666553321 11221 24455
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHCC--CC-CCHhhHHHHHHHHHhcCChHHHHHHH
Q 003122 378 LMAAYASHG-MSKEALSVFNEIKKNG--LC-PDIVSYTSLLNAYGRSQQPVKAREVF 430 (846)
Q Consensus 378 li~~~~~~g-~~~~A~~~~~~m~~~g--~~-p~~~~~~~ll~~~~~~g~~~~A~~~~ 430 (846)
|...|+... .+..|..++.+..+.. .+ ........|+..+.-..++..|.+++
T Consensus 94 La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 94 LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 556666555 6666666666665421 11 11122234555566667777776664
No 386
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.81 E-value=33 Score=27.65 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=21.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 566 ALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMK 609 (846)
Q Consensus 566 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 609 (846)
+.+-++.+...++-|+..+..+-+++|.+.+++.-|.++|+...
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444555555555555555555555555555444
No 387
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.95 E-value=2.4e+02 Score=33.50 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 003122 550 YTVLISSCCRLSRYSEALGFLDEMMDL 576 (846)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 576 (846)
|..|+..|...|..++|++++.+..+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 788999999999999999999998873
No 388
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.90 E-value=13 Score=28.59 Aligned_cols=46 Identities=11% Similarity=0.307 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc-C-HHHHHHHHHHHHhcCCHHHHHHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEA-N-FNTYSILLKNLLAAGNWRKYIEV 779 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~ 779 (846)
...+.++|+..+.+++++-.+| + ..+.-.|+.+|+..|++++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888999999998843333 2 12555566778888988888765
No 389
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.97 E-value=2.2e+02 Score=32.81 Aligned_cols=138 Identities=13% Similarity=0.141 Sum_probs=70.2
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCCChHH-HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 003122 132 KEITQRGAINHSNQVFNWMKNQKNYCARNDI-YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQ 210 (846)
Q Consensus 132 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 210 (846)
....+.|++..+.++-..+. +++..+.+ |..+..- ......++...++.+-.. .+.....-..-...+.+.++
T Consensus 41 ~~a~~~g~~~~~~~~~~~l~---d~pL~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~~ 114 (644)
T PRK11619 41 KQAWDNRQMDVVEQLMPTLK---DYPLYPYLEYRQLTQD-LMNQPAVQVTNFIRANPT--LPPARSLQSRFVNELARRED 114 (644)
T ss_pred HHHHHCCCHHHHHHHHHhcc---CCCcHhHHHHHHHHhc-cccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHccC
Confidence 34455677777666665543 22332221 2222221 112345555555544433 11222222334445566777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCH
Q 003122 211 WRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQY 281 (846)
Q Consensus 211 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 281 (846)
+...+..+.. .+.+.........+....|+.++|......+-..|.. ....++.++..+.+.|.+
T Consensus 115 w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 115 WRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCC
Confidence 7766663311 2345556667777777888877777666666554432 445566666666554443
No 390
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=68.86 E-value=61 Score=26.23 Aligned_cols=63 Identities=10% Similarity=0.200 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 003122 210 QWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLS 273 (846)
Q Consensus 210 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 273 (846)
+.-++.+-++.+...+..|++.+..+.+++|.+.+++..|.++|+-.+... ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 334566666777777778888888888888888888888888888766331 113345555553
No 391
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.53 E-value=64 Score=26.39 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=12.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 611 SGCSPDVITYTAMLHAYNTAEDWEKACALFLEME 644 (846)
Q Consensus 611 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (846)
.++.|++.+..+.+.+|.+.+++.-|+++|+-..
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 392
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.04 E-value=1.2e+02 Score=29.37 Aligned_cols=60 Identities=18% Similarity=0.041 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+.++..++...|++-++++--..++. ..|+ ..+|..-+.+.+..=+.++|..-++++++
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~--~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILR--HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 344666667777788888888788877 7774 44777777777777777788877777766
No 393
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=66.93 E-value=14 Score=34.99 Aligned_cols=56 Identities=11% Similarity=0.029 Sum_probs=33.7
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
....++.+-+.+++.++....|. ....|..++..-.+.|+++.|.+.|++.++ ++|
T Consensus 5 ~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~--ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLE--LDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHc--CCc
Confidence 34556666666666666655555 334455566666666666666666666666 666
No 394
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.72 E-value=69 Score=26.08 Aligned_cols=50 Identities=24% Similarity=0.461 Sum_probs=22.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003122 310 LVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEG 367 (846)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 367 (846)
+...|++++|..+.+.. +.||...|.+|... +.|--+.+..-+.+|...|
T Consensus 49 LmNrG~Yq~Al~l~~~~------~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL------CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC------CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 34455555555544332 22455555444332 3344444444444444443
No 395
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.61 E-value=31 Score=27.77 Aligned_cols=54 Identities=15% Similarity=0.133 Sum_probs=35.0
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHH
Q 003122 708 DLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSIL 763 (846)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 763 (846)
+.++++...+-.+.++....|+-.|...|+-|.|.+.|+.=.. +-|.+.+|...
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmDF 111 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMDF 111 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHHH
Confidence 4455555555555566666777777777777777777776655 67776666443
No 396
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.19 E-value=13 Score=25.05 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=11.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 003122 201 LISAHGRAGQWRWAMNIFDDMLR 223 (846)
Q Consensus 201 li~~~~~~g~~~~A~~~~~~~~~ 223 (846)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555543
No 397
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.25 E-value=2.9e+02 Score=32.34 Aligned_cols=131 Identities=15% Similarity=0.085 Sum_probs=66.1
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 169 LHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWRE 248 (846)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 248 (846)
....+|+++.|++.-..+ .+..+|..|+....++|+.+-|...|+..+. |..|--.|.-.|+.++
T Consensus 652 LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEK 716 (1202)
T ss_pred eehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHH
Confidence 344556666665554333 3456677777777777777777766665543 3334344555566666
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 249 ALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMRE 328 (846)
Q Consensus 249 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 328 (846)
-.++.+..... -|..+. .....-.|+.++-..+++..-. .| ..|.+ ....|.-++|.++.++...
T Consensus 717 L~Km~~iae~r---~D~~~~---~qnalYl~dv~ervkIl~n~g~---~~--laylt----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 717 LSKMMKIAEIR---NDATGQ---FQNALYLGDVKERVKILENGGQ---LP--LAYLT----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHHHhh---hhhHHH---HHHHHHhccHHHHHHHHHhcCc---cc--HHHHH----HhhcCcHHHHHHHHHhhcc
Confidence 55555444322 122111 1111223555555555544321 11 11111 2345667777777777755
Q ss_pred c
Q 003122 329 K 329 (846)
Q Consensus 329 ~ 329 (846)
.
T Consensus 782 ~ 782 (1202)
T KOG0292|consen 782 Q 782 (1202)
T ss_pred c
Confidence 3
No 398
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=62.85 E-value=83 Score=25.65 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=47.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003122 139 AINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIF 218 (846)
Q Consensus 139 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 218 (846)
..++|.-+-+|+-.... ....+--.-+..+...|++++|..+.+.. +.||...|-+|.. .+.|.-+.+..-+
T Consensus 20 cHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 35678888888765331 11122222334556677788877776665 3577777766644 4566666666666
Q ss_pred HHHHHcC
Q 003122 219 DDMLRAA 225 (846)
Q Consensus 219 ~~~~~~g 225 (846)
..|-..|
T Consensus 92 ~rla~sg 98 (115)
T TIGR02508 92 NRLAASG 98 (115)
T ss_pred HHHHhCC
Confidence 6665554
No 399
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.01 E-value=2.3e+02 Score=30.41 Aligned_cols=122 Identities=13% Similarity=0.053 Sum_probs=66.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 311 VKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKE 390 (846)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 390 (846)
...|++-.|-+-+..++...++ .|+.+.. ....+...|+++.+...+...... +.....+...++....+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~-~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQ-DPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCC-CchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 3456666665544444443333 2333332 233445667777777776655432 22334456667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 003122 391 ALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINN 437 (846)
Q Consensus 391 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 437 (846)
|..+-+-|+...++ +......-.-..-..|-++++.-.++++...+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77777777765554 22222222222233455667776676665543
No 400
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.97 E-value=1.9e+02 Score=32.87 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=12.9
Q ss_pred cCCHHHHHHHHHHHHH
Q 003122 770 AGNWRKYIEVLQWMED 785 (846)
Q Consensus 770 ~g~~~~A~~~~~~~~~ 785 (846)
.+++.+|++.-+.|.+
T Consensus 379 And~~kaiqAae~mfK 394 (1226)
T KOG4279|consen 379 ANDYQKAIQAAEMMFK 394 (1226)
T ss_pred ccCHHHHHHHHHHHhc
Confidence 4678888888888876
No 401
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=61.51 E-value=2.6e+02 Score=30.85 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 003122 514 AYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIP--LTNQVYSSVISA 591 (846)
Q Consensus 514 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~ 591 (846)
.+...+..+...+...+++.+.++.... |+ .|..++..+...+....|...+-+-.+..-+ .+......+++.
T Consensus 305 ~~~r~v~~l~~a~~~~e~i~~~~~ea~~---~~--~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~el 379 (587)
T COG4715 305 VVDREVPALASAGLQHEAIRLCEREAEG---PG--SYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAEL 379 (587)
T ss_pred HHHHhhhhhccchhhHHHHHHHHHHhcC---cc--cHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHHH
Confidence 3445566677777777777777665542 22 3666777777777777776666554443211 223345567777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003122 592 YSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHA 626 (846)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (846)
+...|++-.|.++-+..... +|+...|-.|-..
T Consensus 380 ~~~~g~~~~a~~Laq~~F~r--~p~~~sy~~lw~~ 412 (587)
T COG4715 380 KEEEGRLGFAAELAQEAFFR--TPNGRSYLGLWLA 412 (587)
T ss_pred HHhhcchHHHHHHHHHHccC--CCCccchhhHHHH
Confidence 78888888887777666654 5666666554443
No 402
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=61.36 E-value=65 Score=24.74 Aligned_cols=50 Identities=16% Similarity=0.031 Sum_probs=27.0
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----CCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHHHhhcc
Q 003122 767 LLAAGNWRKYIEVLQWMEDA-----GIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIESLRMKS 825 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~~-----g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~ 825 (846)
+-+.|++++|+..|++..+. ...||...-... .....++.++++.|...+
T Consensus 16 ~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~y---------r~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 16 AEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIY---------EQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH---------HHHHHHHHHHHHHHHHHc
Confidence 55667777766666665442 133554431111 134556667777776665
No 403
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=60.58 E-value=3e+02 Score=31.33 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003122 160 NDIYNMMIRLHARHNQIDKARGLFFEMQ 187 (846)
Q Consensus 160 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 187 (846)
+.-|+ .+..+.-.|.++.|..++....
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 45565 5666777788999988885443
No 404
>PRK10941 hypothetical protein; Provisional
Probab=60.35 E-value=53 Score=32.84 Aligned_cols=60 Identities=3% Similarity=-0.186 Sum_probs=39.2
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
-.+|.+.++++.|+...+.+....|. ++.-+..-+-.|.+.|.+..|..-++..++ ..|+
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~--~~P~ 247 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVE--QCPE 247 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHH--hCCC
Confidence 34556666666666666666666665 555566666677777777777777777776 5553
No 405
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.23 E-value=3.4e+02 Score=31.87 Aligned_cols=228 Identities=14% Similarity=-0.006 Sum_probs=110.9
Q ss_pred HhcCCHHHHHHHHHHHhhC----CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHH---HHH--HHHHH
Q 003122 523 MNVGEYEKAIALYKCMKKR----KVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVY---SSV--ISAYS 593 (846)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l--~~~~~ 593 (846)
...|++++|.++-+..... -..+....+..+..+..-.|++++|..+..+..+..-..+...+ ..+ ...+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3567888888877766543 12234555666677777788888888888777654222333322 222 23355
Q ss_pred hcCCHHHH--HHHHHHHHHcC--CC----CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 003122 594 KQGLIAEA--ESMFNMMKMSG--CS----PDVITYTAMLHAYNT-AEDWEKACALFLEMETNNIEPDSI--ACSALMRAF 662 (846)
Q Consensus 594 ~~g~~~~A--~~~~~~~~~~~--~~----p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~ 662 (846)
.+|+...| ...|....... -. +-..++..+..++.+ .+...+|..-++-.......|-.. .+..|+...
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~ 628 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE 628 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH
Confidence 66633322 23333322210 01 113344555555544 112222222222222221112111 223567778
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHH--HHHhcCCHHHHHHHHHhhccCCCc---cchhhHHHHHHHHH
Q 003122 663 NKGGQPSKVLLVAEFMREQDITF----SDSIFFEMVL--ACSLLRDWKTTIDLIKQMEPSFHV---VSIGLLNQLLHLLG 733 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~ 733 (846)
...|+.++|...+.++......+ +-......+. .-...|+.+++.....+-...+.. .....|+.+...-.
T Consensus 629 ~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~ 708 (894)
T COG2909 629 FLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQI 708 (894)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhccCchhhhhhcccccccccchHHH
Confidence 88899999988888887633222 1111122222 223678888877777663211100 01122333333334
Q ss_pred hcCCHHHHHHHHHHHHh
Q 003122 734 KSGRIESMMKLFFKIVS 750 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~ 750 (846)
..|-..+|.....+..+
T Consensus 709 ~Lg~~~eae~al~~l~~ 725 (894)
T COG2909 709 LLGILLEAELALDELAS 725 (894)
T ss_pred HHhhhhHHHHHHHHHhh
Confidence 44555555555554443
No 406
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=60.15 E-value=51 Score=25.44 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHhhccCC
Q 003122 810 YAAIIQERIESLRMKSGD 827 (846)
Q Consensus 810 ~a~~~~~~l~~l~~~~~~ 827 (846)
...++.++++.|...+..
T Consensus 56 K~~eYl~RAE~Lk~~l~~ 73 (76)
T cd02681 56 KSNEYLDRAQALHQLVQG 73 (76)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 455666777777766543
No 407
>PRK12798 chemotaxis protein; Reviewed
Probab=59.74 E-value=2.4e+02 Score=29.96 Aligned_cols=156 Identities=12% Similarity=0.065 Sum_probs=91.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHH
Q 003122 630 AEDWEKACALFLEMETNNIEPDSIACSALMRA-FNKGGQPSKVLLVAEFMREQDI--TFSDSIFFEMVLACSLLRDWKTT 706 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 706 (846)
.|+.++|.+.+..+.....++....+..|+.+ .....++.+|+.+|+.+.=.-| -.....+..-+.+....|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 47777777777777655455555566666554 3345567777777777764221 11233444455566777777776
Q ss_pred HHHHHhhccCCCc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 707 IDLIKQMEPSFHV--VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF--NTYSILLKNLLAAGNWRKYIEVLQW 782 (846)
Q Consensus 707 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 782 (846)
..+.......... ..-.++..+..++.+.++-..- +.+..++.. .+|+. ..|..++..-...|+.+-|...-++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6544443222221 1123344455555555532222 335555542 56643 4888889989999999988888888
Q ss_pred HHHCC
Q 003122 783 MEDAG 787 (846)
Q Consensus 783 ~~~~g 787 (846)
+....
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 77643
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.70 E-value=36 Score=27.55 Aligned_cols=69 Identities=9% Similarity=0.066 Sum_probs=42.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC---cC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHH
Q 003122 733 GKSGRIESMMKLFFKIVSSGAE---AN-----FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PSYGMFRDIVSF 801 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~---p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~ 801 (846)
.+.|++.+|.+.+.+..+.... +. ..+...++..+...|++++|+..++++++.--+ .|..+......+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3678888887777777653111 11 124445666788899999999999998763222 244444444333
No 409
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.29 E-value=2.1e+02 Score=34.56 Aligned_cols=128 Identities=20% Similarity=0.121 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDIT--FS-DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
|...++.+-+.+..+++.++...+++.-+. |. ..++.++-.-....|.|-+|...+-+-..... --.+++.|+-.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdser--rrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSER--RRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHH--HHHHHHHHHHH
Confidence 556677777888888888888888874222 11 23345555666778888888877766543222 24567778777
Q ss_pred HHhcCCHHHH------------HH-HHHHHHhcCCCc-CHHHHHHHHHH-HHhcCCHHHHHHH-HHHHHHC
Q 003122 732 LGKSGRIESM------------MK-LFFKIVSSGAEA-NFNTYSILLKN-LLAAGNWRKYIEV-LQWMEDA 786 (846)
Q Consensus 732 ~~~~g~~~~A------------~~-~~~~~~~~g~~p-~~~~~~~l~~~-~~~~g~~~~A~~~-~~~~~~~ 786 (846)
++.+|.++.- .. +++.+.. ..| +-..|+.|+.+ +...++|.+|-.+ |+.....
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaR--s~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAAR--SSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhh--cCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 7777766543 33 3444444 344 33345555555 7788999887654 6655543
No 410
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.24 E-value=19 Score=27.77 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=8.0
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 003122 312 KLGQYDKAIDLFHSMREK 329 (846)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~ 329 (846)
...+.++|+..+..++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k 35 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEK 35 (80)
T ss_pred ccchHHHHHHHHHHHHhh
Confidence 334444444444444443
No 411
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.97 E-value=2.4e+02 Score=29.76 Aligned_cols=96 Identities=10% Similarity=0.107 Sum_probs=59.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHH
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFN-KGGQPSKVLLVAEFMREQDIT----FSDSIFFEMVLACS 698 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 698 (846)
+..+.+.|.+..|.++.+-+...+..-|+.....+|+.|. +.++++--+++++........ .-+......+.++.
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~ 189 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYF 189 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHH
Confidence 3456778888888888888887543335655566666554 677777777777765542110 01123344555555
Q ss_pred hcCCH---------------HHHHHHHHhhccCCCc
Q 003122 699 LLRDW---------------KTTIDLIKQMEPSFHV 719 (846)
Q Consensus 699 ~~g~~---------------~~A~~~~~~~~~~~~~ 719 (846)
..++. +.|...++++....|.
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 190 RLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 56655 7888888887766664
No 412
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=58.58 E-value=21 Score=22.03 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q 003122 737 RIESMMKLFFKIVSSGAEANFNTYSILLK 765 (846)
Q Consensus 737 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 765 (846)
.++.|..+|++.+. ..|+..+|...+.
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHHHH
Confidence 46888889999888 7788888876543
No 413
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.32 E-value=90 Score=30.92 Aligned_cols=85 Identities=14% Similarity=0.193 Sum_probs=43.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-----H
Q 003122 624 LHAYNTAEDWEKACALFLEMET--NNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVL-----A 696 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~--~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-----~ 696 (846)
|.+++..++|.+++...-+--+ ..++|.. ...-|-.|.+.|.+....++-..=+..--+-+..-|..++. +
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 4567777777777665544433 1233333 33334447777777776666655554211112222443333 3
Q ss_pred HHhcCCHHHHHHHH
Q 003122 697 CSLLRDWKTTIDLI 710 (846)
Q Consensus 697 ~~~~g~~~~A~~~~ 710 (846)
+.=.|.+++|++++
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 33456666666666
No 414
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=58.20 E-value=62 Score=33.15 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCCCcCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 003122 737 RIESMMKLFFKIVSSGAEANFN----TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQ 803 (846)
Q Consensus 737 ~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 803 (846)
-.++...++..+++ .-|+.. -|..++..+...|..++.+.+|++++..|.+|-..+-..+..++.
T Consensus 118 p~eei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 44677777777777 666543 677777778888888888888888888888776655555555554
No 415
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.82 E-value=30 Score=25.42 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 738 IESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++...++++.+.. ..=|..-...++.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444445544443 333556666777888888888888888877754
No 416
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.21 E-value=1.4e+02 Score=31.80 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=28.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 003122 592 YSKQGLIAEAESMFNMMKMSGCSPDVI--TYTAMLHAYN--TAEDWEKACALFLEMET 645 (846)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 645 (846)
+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34566666777666666664 333332 3334444432 34456666666666554
No 417
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.19 E-value=1.3e+02 Score=32.15 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=41.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCChhHHHHHHHHHHHC
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPDSI--ACSALMRAFN--KGGQPSKVLLVAEFMREQ 681 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 681 (846)
.+.+.+++..|.++++++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455789999999999999986 555544 4455555543 577889999999988864
No 418
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.79 E-value=2.1e+02 Score=28.26 Aligned_cols=201 Identities=10% Similarity=0.040 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh-HHHH
Q 003122 596 GLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTA-EDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPS-KVLL 673 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~-~A~~ 673 (846)
.....|+++.+..+... +.+-..|..--..+... .+..+=++.++++.+. .+.|-..|..--......|++. .-++
T Consensus 57 E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~-npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIED-NPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CccchhHHHHHHHHHHHhcCcccchHH
Confidence 34455555555555532 22223332222222211 1345555556666553 2334445544443444455555 5566
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh-cC-----CHHHHHHHHHH
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK-SG-----RIESMMKLFFK 747 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g-----~~~~A~~~~~~ 747 (846)
+.+.|+..+-+ +-.+|..--.++..-+.++.-+.+...+.+.+.. +-.+||.-...... .| .++.-..+..+
T Consensus 135 f~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~ 212 (318)
T KOG0530|consen 135 FTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELNYTKD 212 (318)
T ss_pred HHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence 66666664433 4444555555555666666666666666544333 22344332211111 11 33445566677
Q ss_pred HHhcCCCcC-HHHHHHHHHHHHh-cC--CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 003122 748 IVSSGAEAN-FNTYSILLKNLLA-AG--NWRKYIEVLQWMEDAGIQPSYGMFRDIVSFA 802 (846)
Q Consensus 748 ~~~~g~~p~-~~~~~~l~~~~~~-~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 802 (846)
.+. +.|+ ..+|+.|...+.. .| ...+...+...+.-..-.-++....-+.+++
T Consensus 213 ~I~--~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 213 KIL--LVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHH--hCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 777 7884 4588888777775 44 1234444444443111122444444455554
No 419
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.78 E-value=2.2e+02 Score=28.48 Aligned_cols=27 Identities=22% Similarity=0.112 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 580 LTNQVYSSVISAYSKQGLIAEAESMFN 606 (846)
Q Consensus 580 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (846)
.+......++..|.+.|++.+|+..|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 456677778888888888888776553
No 420
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=55.64 E-value=2.4e+02 Score=28.63 Aligned_cols=55 Identities=11% Similarity=0.004 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHH
Q 003122 621 TAMLHAYNTAEDWEKACALFLEMETNNIEPDS---IACSALMRAFNKGGQPSKVLLVAEF 677 (846)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (846)
.-|..+..+.|+..+|.+.|+.+.+. .|=. .+...|+.++....-+.+...++-+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666778888888888877653 2211 1233455555554444444444333
No 421
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=55.09 E-value=2.9e+02 Score=29.46 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 585 YSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNK 664 (846)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 664 (846)
...|+.-|.-.|++.+|.+.++++-.- +-...+.+.+++.+.-+.|+-..-+.++++.-..| .+|-+.+-.+|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 345667778888888888887776431 11135677888888888887777777777776654 3455555555543
No 422
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=54.86 E-value=2.3e+02 Score=28.96 Aligned_cols=120 Identities=10% Similarity=0.069 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 633 WEKACALFLEMETNNIEPDSIACSALMRAFNK------GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTT 706 (846)
Q Consensus 633 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 706 (846)
++++..++++....+. |.+......+.++-. .-+|..-..+|+-+....++|-.... -.-+..+..-.+.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LN--RAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLN--RAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeeh--HHHHHHHhhhHHhH
Confidence 4455555555555432 555444444443321 11344444455555544433322111 11122222234444
Q ss_pred HHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 707 IDLIKQMEPSFHVV-SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 707 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
+..++.+....--. ....+..-+..+.+.|+.++|...|++++. +.++.
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~--La~~~ 398 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA--LARNA 398 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH--hcCCh
Confidence 45554443321110 112334556667777888888888888877 65544
No 423
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=54.39 E-value=32 Score=21.96 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 003122 725 LNQLLHLLGKSGRIESMMKL 744 (846)
Q Consensus 725 ~~~l~~~~~~~g~~~~A~~~ 744 (846)
+..++..+...|++++|+.+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34455555555555555555
No 424
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.19 E-value=3e+02 Score=29.71 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=7.5
Q ss_pred HHHHhcCCHHHHHHHH
Q 003122 308 YCLVKLGQYDKAIDLF 323 (846)
Q Consensus 308 ~~~~~~g~~~~A~~~~ 323 (846)
...+..|+.+.+..++
T Consensus 73 ~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 73 HDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3344555555444444
No 425
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.12 E-value=3.9e+02 Score=30.65 Aligned_cols=194 Identities=14% Similarity=0.166 Sum_probs=100.2
Q ss_pred HHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHH---------HHHHHHHHHhcCCHH
Q 003122 532 IALYKCMKKRKVMPDS---VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQV---------YSSVISAYSKQGLIA 599 (846)
Q Consensus 532 ~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~g~~~ 599 (846)
-..+.+|..+--.|+. .+...++..|....+++..+++.+.+.+. |..... |.-.++--.+-|+-+
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i--P~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI--PDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC--cchhhhhccCceEEEeeehhcccCCCccHH
Confidence 3455666654323432 34455555666677777777777777652 211111 111112222456777
Q ss_pred HHHHHHHHHHHcC--CCCCHH-----HHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hh
Q 003122 600 EAESMFNMMKMSG--CSPDVI-----TYTAML--HAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQ-PS 669 (846)
Q Consensus 600 ~A~~~~~~~~~~~--~~p~~~-----~~~~l~--~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~-~~ 669 (846)
+|+...-.+.+.. +.||.. +|.-+. ..|-..+..+.|.+.|++.-+ +.|...+=..+...+...|+ ++
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhhcc
Confidence 7777766666532 334432 222211 124455667778888888877 66765432223333333332 22
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 670 KVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIV 749 (846)
Q Consensus 670 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 749 (846)
...++-. .| ..+...+.+.|.++.-.++.+-. ....+-.-.+++.+|++..+.|.
T Consensus 339 ns~Elq~----Ig--------mkLn~LlgrKG~leklq~YWdV~-------------~y~~asVLAnd~~kaiqAae~mf 393 (1226)
T KOG4279|consen 339 NSLELQQ----IG--------MKLNSLLGRKGALEKLQEYWDVA-------------TYFEASVLANDYQKAIQAAEMMF 393 (1226)
T ss_pred chHHHHH----HH--------HHHHHHhhccchHHHHHHHHhHH-------------HhhhhhhhccCHHHHHHHHHHHh
Confidence 2222111 11 22334456666665544444321 22333445678899999999999
Q ss_pred hcCCCcC
Q 003122 750 SSGAEAN 756 (846)
Q Consensus 750 ~~g~~p~ 756 (846)
+ ++|-
T Consensus 394 K--Lk~P 398 (1226)
T KOG4279|consen 394 K--LKPP 398 (1226)
T ss_pred c--cCCc
Confidence 8 7774
No 426
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.73 E-value=41 Score=31.79 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003122 737 RIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP 790 (846)
Q Consensus 737 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 790 (846)
..+...+..++.++ ..|+...|..++.++...|+.++|..+.+++.. +-|
T Consensus 126 ~l~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 126 MLEAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred HHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 34555566667777 778888888888888888888888888888765 455
No 427
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=53.49 E-value=28 Score=25.54 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003122 176 IDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLR 223 (846)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 223 (846)
++...++++.++.. +.|..-.-.+|.+|...|++++|.+..+.+.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444431 24455555566666666666666666665543
No 428
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.10 E-value=2.5e+02 Score=28.05 Aligned_cols=68 Identities=21% Similarity=0.200 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 337 IVTFTSIIHLYSVNGQIENCKGVFNTMLA----EGLKPNIVS-YNALMAAYASHGMSKEALSVFNEIKKNGLC 404 (846)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 404 (846)
..++..+...|++.++.+.+.+...+..+ .|.+.|+.. -..|.-.|....-+++-++..+.|.+.|..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 45566677777777777777666555443 355555442 222333444444455666666666666543
No 429
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.87 E-value=82 Score=33.50 Aligned_cols=94 Identities=16% Similarity=0.092 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH-------HCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHH-------C
Q 003122 621 TAMLHAYNTAEDWEKACALFLEME-------TNNIEPD-----SIACSALMRAFNKGGQPSKVLLVAEFMRE-------Q 681 (846)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~-------~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~ 681 (846)
..++..+....++.+-++..++.. +.|..|- -.+...|++..+-.|++..|++.++.+-- .
T Consensus 79 LnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~ 158 (404)
T PF10255_consen 79 LNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTK 158 (404)
T ss_pred HHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhcc
Confidence 344455556666666655555421 1111111 12344667778888898888888775531 1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 682 DITFSDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 682 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
-+.....+++.++-+|...+++.+|++.+..+.
T Consensus 159 V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 159 VPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred CcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122344567788888888888888888887654
No 430
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=51.71 E-value=4.1e+02 Score=30.23 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 230 RSTYNNLINACGSTGNWREALKVC 253 (846)
Q Consensus 230 ~~~~~~ll~~~~~~g~~~~A~~~~ 253 (846)
..-|+ .+..+.-.|.++.|.+++
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL 171 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLL 171 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHH
Confidence 44444 455556666666666665
No 431
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.27 E-value=1.4e+02 Score=30.44 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=34.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 626 AYNTAEDWEKACALFLEMETNNI-EPD--SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRD 702 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 702 (846)
-|.+.+++..|...|.+-++... .|| .+.|+.-..+-...|++..|+.-...++..++. ....+..-+.++....+
T Consensus 90 ~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 90 EYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHHHHHHHH
Confidence 34444444444444444443211 121 233333333333444444444444444443332 22333333334444444
Q ss_pred HHHHHHHHHh
Q 003122 703 WKTTIDLIKQ 712 (846)
Q Consensus 703 ~~~A~~~~~~ 712 (846)
+++|..+.+.
T Consensus 169 ~~~a~nw~ee 178 (390)
T KOG0551|consen 169 FAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHhh
Confidence 4444444433
No 432
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.74 E-value=42 Score=25.79 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 738 IESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
+++|+.++.++++ --..|++++|+.+|..+++.
T Consensus 3 l~kai~Lv~~A~~----------------eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFD----------------EDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHH----------------hhHhhhHHHHHHHHHHHHHH
Confidence 4566666666655 22467777888777776653
No 433
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=50.73 E-value=1.1e+02 Score=30.20 Aligned_cols=64 Identities=13% Similarity=0.067 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 725 LNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 725 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
..++-..+.+.++++.|....++.+. +.| |+.-+..-+.+|.+.|.+.-|++-++...+. -|+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~--l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~--~P~~ 248 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLD--LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH--CPDD 248 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHh--hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh--CCCc
Confidence 45667788899999999999999999 989 6667888899999999999999999887664 3544
No 434
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.06 E-value=86 Score=25.33 Aligned_cols=52 Identities=15% Similarity=0.055 Sum_probs=29.9
Q ss_pred hcCCHHHHHHHHHHHHH----CCCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 629 TAEDWEKACALFLEMET----NNIEP----DSIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~----~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
+.|++.+|.+.+.+..+ .+... -..+...+.......|++++|+..++++++
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667777555555443 21111 022333455566677888888888887775
No 435
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=49.63 E-value=4.6e+02 Score=30.15 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003122 268 HNIVLSAYKNGAQYSKALSYFELMKG 293 (846)
Q Consensus 268 ~~~ll~~~~~~g~~~~A~~~~~~m~~ 293 (846)
|..+..+|.-..+.+.+.++++.+.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 33455566666677777777777665
No 436
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=49.09 E-value=3.5e+02 Score=28.59 Aligned_cols=140 Identities=9% Similarity=0.037 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--------HHHHhcCCHHHHHHHHHHHHH-CCC
Q 003122 580 LTNQVYSSVISAY--SKQGLIAEAESMFNMMKMSGCSPDVITYTAML--------HAYNTAEDWEKACALFLEMET-NNI 648 (846)
Q Consensus 580 ~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~--------~~~~~~g~~~~A~~~~~~~~~-~g~ 648 (846)
+....|..++-.+ ..++++.+|..+-+.....-+.-|..++..+. ..|-..|+...-...+..... ..+
T Consensus 122 ~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL 201 (493)
T KOG2581|consen 122 AEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL 201 (493)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh
Confidence 3345555544333 34577888888877666532233444443332 334456666666665555543 112
Q ss_pred CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH--CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc
Q 003122 649 EPD----SIACSALMRAFNKGGQPSKVLLVAEFMRE--QDIT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV 719 (846)
Q Consensus 649 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 719 (846)
.-| .+..+.|++.|...+.++.|..+..+..- .... .-...++.++.+-.-++++..|.+.+-.+....|.
T Consensus 202 rhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 202 RHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred cCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 222 44567777888888888888877766652 1100 01223455666777778888888888877767665
No 437
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.92 E-value=1.4e+02 Score=31.81 Aligned_cols=97 Identities=9% Similarity=0.075 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH-------CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhhccC-----
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMRE-------QDITFS-----DSIFFEMVLACSLLRDWKTTIDLIKQMEPS----- 716 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 716 (846)
....++.++....+..+-++..+...+ .|..|- --+...++++++..|++..|++.++.+.-.
T Consensus 77 ~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~ 156 (404)
T PF10255_consen 77 SVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLY 156 (404)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhh
Confidence 333445556666666666555554221 111110 011234556777888888888888766321
Q ss_pred --CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 717 --FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 717 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
-+...+.++..+|-+|...+++.+|++.|..++-
T Consensus 157 ~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 157 TKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred ccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333455667777888888888888888877764
No 438
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.17 E-value=1.2e+02 Score=25.10 Aligned_cols=79 Identities=14% Similarity=0.197 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003122 139 AINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIF 218 (846)
Q Consensus 139 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 218 (846)
..++|..+.+|+..... ....+--..+..+...|++++|+. .-.. ...||...|-+|.. .+.|.-+++...+
T Consensus 21 cH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl---~~~~-~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALL---LPQC-HCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHH---HHTT-S--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHH---hccc-CCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 56789999999987653 122233334556678888888822 2221 23477777765543 5777777777777
Q ss_pred HHHHHcC
Q 003122 219 DDMLRAA 225 (846)
Q Consensus 219 ~~~~~~g 225 (846)
..+-..|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7665544
No 439
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.07 E-value=2.7e+02 Score=27.11 Aligned_cols=60 Identities=8% Similarity=-0.038 Sum_probs=29.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCC
Q 003122 658 LMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH 718 (846)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 718 (846)
+..++...|++-++++.-...+...+. +...|+.-+.+....-+.++|..=+.++.+.+|
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 334444555555555555555554433 444444444444444444444444444444443
No 440
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.89 E-value=2.4e+02 Score=27.20 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=14.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 003122 201 LISAHGRAGQWRWAMNIFDDML 222 (846)
Q Consensus 201 li~~~~~~g~~~~A~~~~~~~~ 222 (846)
-|....+.|+.++|++...++-
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhC
Confidence 4556667777777777666653
No 441
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.79 E-value=3.6e+02 Score=32.71 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=13.2
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 003122 521 SYMNVGEYEKAIALYKCMKK 540 (846)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~ 540 (846)
+|...|+..+|+..|.+...
T Consensus 929 ~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred eeecCCchHHHHHHHHHHhh
Confidence 35667777777777766543
No 442
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=47.11 E-value=8.5e+02 Score=32.55 Aligned_cols=323 Identities=13% Similarity=0.078 Sum_probs=167.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 305 IVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYAS 384 (846)
Q Consensus 305 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 384 (846)
++..+-.+++.+.+|...+++-........-....|..+...|..-++++....+...-.. .|+ . ..-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--L-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--H-HHHHHHHHh
Confidence 5566777889999999999884211111011234455566689999999988888764221 222 2 234455667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHH-HHHHHhCCCHHHHH
Q 003122 385 HGMSKEALSVFNEIKKNGLCPD-IVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSAL-IDAYGSNGLLAEAV 462 (846)
Q Consensus 385 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~ 462 (846)
.|++..|...|+.+.+. .|+ ...++-++......|.++...-..+....+. .+....|+.+ +.+-.+.++++...
T Consensus 1462 ~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 89999999999999875 344 6678878887778888888877666665442 3333444433 44557778887777
Q ss_pred HHHHHHHHCCCCCCHHHHHH--HHHHHHhcC--CHHHHHHHHHHHHhC--------CCc-cCHHHHHHHHHHHHhcCCHH
Q 003122 463 EVFREMEQDGIEPNIVSICT--LLAACGRCG--RKVNIDAVLLAAEMR--------DIK-LNTVAYNSAIGSYMNVGEYE 529 (846)
Q Consensus 463 ~~~~~~~~~g~~~~~~~~~~--ll~~~~~~g--~~~~a~~~~~~~~~~--------~~~-~~~~~~~~li~~~~~~g~~~ 529 (846)
..+. .. +..+|.. +...+.+.. +.-.-...+..+... +.. .-...|..++..+.-..--.
T Consensus 1539 ~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 6655 11 1111111 122221111 111111111111111 000 11123444433332221111
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH-HHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 530 KAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDE-MMDLKI-----PLTNQVYSSVISAYSKQGLIAEAES 603 (846)
Q Consensus 530 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~ 603 (846)
....++..-......-+..-|..-+..-....+..+-+-.++. +..... ..-..+|...++....+|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111111000000011111122122111111112222222222 111111 1234567788888888999999988
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 604 MFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETN 646 (846)
Q Consensus 604 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (846)
.+-.+.+.+ . ...+--.+..+...|+...|+.++++.++.
T Consensus 1692 all~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1692 ALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 877777654 2 334455666777889999999999988853
No 443
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=46.55 E-value=1.1e+02 Score=26.40 Aligned_cols=41 Identities=32% Similarity=0.331 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 003122 741 MMKLFFKIVSSGAEANFN-TYSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 741 A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
+.++|.-+...|+--... -|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666655544433 45555566666666666666654
No 444
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=46.09 E-value=1.8e+02 Score=24.41 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=18.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC
Q 003122 659 MRAFNKGGQPSKVLLVAEFMREQ 681 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~ 681 (846)
...+.+.|+.-+|+++.+.++..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~ 25 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISR 25 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 34577889999999999988863
No 445
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.96 E-value=3.5e+02 Score=27.68 Aligned_cols=24 Identities=4% Similarity=0.162 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQ 712 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~ 712 (846)
++...+..|++-|+.+.|++.+.+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 344444455555555555554443
No 446
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=45.80 E-value=39 Score=32.19 Aligned_cols=60 Identities=5% Similarity=-0.066 Sum_probs=52.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccc
Q 003122 661 AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS 721 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 721 (846)
...+.|+.+.|.+++.++++.-++ ....|..++..-.++|+.+.|.+.+++..+.+|...
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 455788999999999999997666 778899999999999999999999999998888733
No 447
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.45 E-value=4.9e+02 Score=28.99 Aligned_cols=156 Identities=12% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC------------HHHHHHHHHHHHhcCChhHHHHHHHHH----------------
Q 003122 627 YNTAEDWEKACALFLEMETNNIEPD------------SIACSALMRAFNKGGQPSKVLLVAEFM---------------- 678 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------- 678 (846)
+.....+++|...|.-.... ..|+ ..+...+...+..+|+.+.|..+.++.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~s 326 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFS 326 (665)
T ss_pred eecchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccc
Q ss_pred ----HHCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC-CHHHHHHHHHHH--
Q 003122 679 ----REQDITFSDSIFFEMVL---ACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG-RIESMMKLFFKI-- 748 (846)
Q Consensus 679 ----~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-- 748 (846)
+.....-+...|.++-. .+.+.|-|..|.++.+.+...+|.-++.+...++..|+-.. +++=-+++++..
T Consensus 327 g~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 327 GNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q ss_pred ---HhcCCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH
Q 003122 749 ---VSSGAEANFNTYSILLKNLLAAGN---WRKYIEVLQWMED 785 (846)
Q Consensus 749 ---~~~g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~ 785 (846)
+. .-|+..--..|+..|..... -+.|...+.++..
T Consensus 407 ~n~l~--~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 407 MNKLS--QLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred hccHh--hcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
No 448
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=43.90 E-value=47 Score=19.74 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHhcCCCc-CHHHHHHHH
Q 003122 736 GRIESMMKLFFKIVSSGAEA-NFNTYSILL 764 (846)
Q Consensus 736 g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 764 (846)
|+.+.|..+|++++. ..| +...|...+
T Consensus 1 ~~~~~~r~i~e~~l~--~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALE--KFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHH--HCCCChHHHHHHH
Confidence 455667777777776 455 333444433
No 449
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.89 E-value=1.3e+02 Score=24.48 Aligned_cols=48 Identities=8% Similarity=-0.063 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV 719 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 719 (846)
.+.+++....+....+-....++..|...|+.+.|.+-|+.-....|.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPE 104 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPE 104 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCcc
Confidence 344555555444434455566777777777777777777766666665
No 450
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.88 E-value=3.3e+02 Score=26.91 Aligned_cols=170 Identities=10% Similarity=0.030 Sum_probs=112.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 627 YNTAEDWEKACALFLEMETNNIEPDSI-ACSALMRAFNKG-GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWK 704 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 704 (846)
+.+...-..|+++-...+. +.|-.. +|..--..+.+. .+..+-++++.+..+.+++ +-..|..--.+....|+..
T Consensus 53 ~~~~E~S~RAl~LT~d~i~--lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIR--LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HhccccCHHHHHHHHHHHH--hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcc
Confidence 4566677889999999887 445433 343322223222 3467778889999887776 6667766556666777777
Q ss_pred -HHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHh-cCCH-----HHH
Q 003122 705 -TTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLA-AGNW-----RKY 776 (846)
Q Consensus 705 -~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~-~g~~-----~~A 776 (846)
.-+++.+.|...+.. +-.+|..--+++...+.++.-..+..++++ .+- |+.+|+.-.-.... .|-. +.-
T Consensus 130 ~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle--~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~E 206 (318)
T KOG0530|consen 130 FRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLE--EDIRNNSAWNQRYFVITNTKGVISKAELERE 206 (318)
T ss_pred cchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHH--HhhhccchhheeeEEEEeccCCccHHHHHHH
Confidence 778888888876666 677888888999999999999999999998 443 55555543221111 2222 223
Q ss_pred HHHHHHHHHCCCCC-CHHhHHHHHHHHHh
Q 003122 777 IEVLQWMEDAGIQP-SYGMFRDIVSFAQT 804 (846)
Q Consensus 777 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 804 (846)
+.+..+++. +.| +...++-|..++..
T Consensus 207 l~yt~~~I~--~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 207 LNYTKDKIL--LVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHHH--hCCCCccHHHHHHHHHHh
Confidence 344555555 445 45578877777765
No 451
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=43.31 E-value=2.6e+02 Score=28.67 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=27.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHhh
Q 003122 659 MRAFNKGGQPSKVLLVAEFMREQ---DITFSDSIFF--EMVLACSLLRDWKTTIDLIKQM 713 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 713 (846)
+...-+.++.++|+++++++.+. .-.|+...+. .++.++...|+.+++.+.+...
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~ 141 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDL 141 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 33444556777777777777752 1123333332 2333444455555555555443
No 452
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=43.29 E-value=82 Score=30.50 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=17.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC
Q 003122 662 FNKGGQPSKVLLVAEFMREQDIT 684 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~ 684 (846)
+...|+++.|+++.+.+++.|..
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCC
Confidence 55678888888888888877643
No 453
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=43.28 E-value=3.6e+02 Score=27.15 Aligned_cols=115 Identities=11% Similarity=0.065 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cCC-HHHHHHHHHHHHhC-CCccCHHHHHHHHHHHHhcCCHHHHH
Q 003122 457 LLAEAVEVFREMEQ-DGIEPNIVSICTLLAACGR-CGR-KVNIDAVLLAAEMR-DIKLNTVAYNSAIGSYMNVGEYEKAI 532 (846)
Q Consensus 457 ~~~~A~~~~~~~~~-~g~~~~~~~~~~ll~~~~~-~g~-~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 532 (846)
.+.+|+.+|+.... ..+-.|..+...+++.... .+. ...-.++.+.+... +..++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663221 2244566666666665544 111 11112222222211 22344455555566666666666666
Q ss_pred HHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 003122 533 ALYKCMKKR-KVMPDSVTYTVLISSCCRLSRYSEALGFLD 571 (846)
Q Consensus 533 ~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 571 (846)
++++..... +..-|...|..+|......|+..-...+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 665555443 333455556666666666666554444443
No 454
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.17 E-value=53 Score=30.99 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003122 192 KPDAETYNALISAHGRAGQWRWAMNIFDDMLRA 224 (846)
Q Consensus 192 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 224 (846)
.|+...|..++.++...|+.++|.+..+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466666666666666666666666666666554
No 455
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.09 E-value=1e+02 Score=25.78 Aligned_cols=27 Identities=30% Similarity=0.682 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 003122 444 SYSALIDAYGSNGLLAEAVEVFREMEQ 470 (846)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (846)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377888889999999999999988877
No 456
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=42.81 E-value=1.6e+02 Score=22.84 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=10.2
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003122 767 LLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~ 785 (846)
+-+.|++++|+.+|...++
T Consensus 16 ~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 16 LDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3445666666655555443
No 457
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=42.03 E-value=2.8e+02 Score=26.96 Aligned_cols=108 Identities=11% Similarity=0.060 Sum_probs=56.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC-CCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 627 YNTAEDWEKACALFLEMETNNIE-PDSI--ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDW 703 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~-p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 703 (846)
+...|+++.|+++.+-+++.|.. |+.+ ++-+++ .++..+......+.|...++.....+..+-...
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v--------aeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~--- 161 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV--------AEEVANAALKAASAGESVEPYFLRVFLDLTTEW--- 161 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH--------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcC---
Confidence 45679999999999999887754 4421 111111 123333334444444433333322221111111
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHH---------HhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 704 KTTIDLIKQMEPSFHVVSIGLLNQLLHLL---------GKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 704 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
..+..+....|..++..+ ...++...|...++++++ ++|...
T Consensus 162 -----------dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~--l~~k~G 212 (230)
T PHA02537 162 -----------DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQ--LNDKCG 212 (230)
T ss_pred -----------CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHH--hCCCCC
Confidence 111122334455555555 244677888999999888 777544
No 458
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.99 E-value=1.9e+02 Score=32.31 Aligned_cols=55 Identities=13% Similarity=0.156 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
.|.-+|....++|.|.++++++-+ .+| ++.+-..+..+....|+-++|+......
T Consensus 399 ~l~~CYL~L~QLD~A~E~~~EAE~--~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 399 ALQVCYLKLEQLDNAVEVYQEAEE--VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 333444444445555555555544 444 2333333444444445555554444443
No 459
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.78 E-value=1.2e+02 Score=30.41 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=22.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
+.|+.++|..+|+.++. +.|+ +.+...++.......+.-+|-..|-++
T Consensus 128 ~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred hccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 44555555555555555 5552 224444444444444444444444444
No 460
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=41.71 E-value=3e+02 Score=25.73 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 377 ALMAAYASHGMSKEALSVFNEIKK 400 (846)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~m~~ 400 (846)
.++..|-+.-++.++.++++.|.+
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777777665
No 461
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=41.68 E-value=3.3e+02 Score=26.26 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 003122 614 SPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP---DSIACS--ALMRAFNKGGQPSKVLLVAEFMREQDITFSDS 688 (846)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 688 (846)
.+...-+|.|+--|.-...+.+|-..|.+-.. +.| |..++. .-+......|+.++|++.....-..-++-+..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~--i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESG--IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccC--CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 34455556666666655556666655544332 333 222222 34555677777777777776655322232333
Q ss_pred HHHHHHH----HHHhcCCHHHHHHHHHhh
Q 003122 689 IFFEMVL----ACSLLRDWKTTIDLIKQM 713 (846)
Q Consensus 689 ~~~~l~~----~~~~~g~~~~A~~~~~~~ 713 (846)
.++.+.. -..+.|..++|+++.+.-
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333322 245667777777776653
No 462
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.58 E-value=98 Score=21.27 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=10.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHH
Q 003122 209 GQWRWAMNIFDDMLRAAVAPSRSTYN 234 (846)
Q Consensus 209 g~~~~A~~~~~~~~~~g~~~~~~~~~ 234 (846)
|...++..+++.|.+.|+.-+...+.
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHH
Confidence 33334444444444444443333333
No 463
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=41.54 E-value=4e+02 Score=27.42 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCCC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003122 140 INHSNQVFNWMKNQKNY---CARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMN 216 (846)
Q Consensus 140 ~~~A~~~f~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 216 (846)
...|.+.|+.......- ..+++.-..+.....+.|..+....+++.... ..+......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 003122 217 IFDDMLRAAVAPSRSTYNNLINAC-GSTGNWREALKVCKK 255 (846)
Q Consensus 217 ~~~~~~~~g~~~~~~~~~~ll~~~-~~~g~~~~A~~~~~~ 255 (846)
+++.....+..++......+.... ...--.+.+++.+..
T Consensus 223 ~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 464
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=41.43 E-value=1.6e+02 Score=22.61 Aligned_cols=18 Identities=6% Similarity=-0.114 Sum_probs=10.6
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003122 768 LAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 768 ~~~g~~~~A~~~~~~~~~ 785 (846)
-..|++++|+.+|...++
T Consensus 17 D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 17 DQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 345666666666665544
No 465
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=40.96 E-value=2.3e+02 Score=24.15 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=39.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHh----cC-CCcCHH-HHHH----HHHHHHhcCCHHHHHHHHHHHHH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVS----SG-AEANFN-TYSI----LLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g-~~p~~~-~~~~----l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+..++..|..++...|+++++....++++. .| +..|.. .|.. -+-++...|+.++|+..|++.-+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 344556777777778887777776666653 12 445543 3332 23457788999999988887643
No 466
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.59 E-value=3e+02 Score=25.52 Aligned_cols=129 Identities=12% Similarity=0.173 Sum_probs=0.0
Q ss_pred cccHHHHHHHHhcccCCCCHHHHHHHHHHc--CChhHHHHHHHHHHhCCCCCCChHHHH----HHHHHHHHcCC------
Q 003122 108 YEDVEGVLNRWVGRFARKNFPFLIKEITQR--GAINHSNQVFNWMKNQKNYCARNDIYN----MMIRLHARHNQ------ 175 (846)
Q Consensus 108 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~f~~~~~~~~~~~~~~~~~----~li~~~~~~g~------ 175 (846)
..+++.+.++|.-.+- +..+++.+... .++.+-..+++++... +....++. .+++.+.|-..
T Consensus 1 ~~~~e~v~n~W~~dfy---f~~~c~aFR~~r~~dFr~~rdi~e~ll~~---~~~~~a~~~k~l~i~QfLsRI~eG~~LD~ 74 (200)
T cd00280 1 EADAEAVANRWVLDFY---FHSACRAFREGRYEDFRRTRDIAEALLVG---PLKLTATQLKTLRIMQFLSRIAEGKNLDC 74 (200)
T ss_pred ChhHHHHHHHHHHHHH---HHHHHHHHHccChHHHHHHHHHHHHHHhc---cccccccchhHhHHHHHHHHHHcCCCCCC
Q ss_pred ----------HHHHHHHHHHHhhCCCCCCHHHHHH-------HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 176 ----------IDKARGLFFEMQKWRCKPDAETYNA-------LISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLIN 238 (846)
Q Consensus 176 ----------~~~A~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 238 (846)
++.|+.+|+.+.+..-.|....=.. .+-.|.+.|.+++|.++++.... .|+......-+.
T Consensus 75 ~Fd~~~~~TPLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~ 151 (200)
T cd00280 75 QFENDEELTPLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLL 151 (200)
T ss_pred ccCCCCCcChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHH
Q ss_pred HHHhcCC
Q 003122 239 ACGSTGN 245 (846)
Q Consensus 239 ~~~~~g~ 245 (846)
...+..+
T Consensus 152 ~II~~Kd 158 (200)
T cd00280 152 MIIREKD 158 (200)
T ss_pred HHHHccc
No 467
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=40.46 E-value=74 Score=31.71 Aligned_cols=57 Identities=14% Similarity=-0.003 Sum_probs=48.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc
Q 003122 662 FNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV 719 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 719 (846)
..+.|+.++|..+|+.++...+. .+.++..++.......+.-+|-++|-++....|.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 45789999999999999988766 7788888888888888888999999888877776
No 468
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.20 E-value=4.8e+02 Score=27.67 Aligned_cols=53 Identities=17% Similarity=-0.024 Sum_probs=35.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHH--hcCChhHHHHHHHH
Q 003122 625 HAYNTAEDWEKACALFLEMETNNIEPDSI----ACSALMRAFN--KGGQPSKVLLVAEF 677 (846)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~--~~g~~~~A~~~~~~ 677 (846)
..+.+.+++..|.++|+++.....+|+.. .|..+..+|. ..-++++|.+.+++
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34567889999999999998865544433 3334444443 46677888888875
No 469
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.70 E-value=4e+02 Score=26.62 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHhhHHHH-HHHHHhcCChHHHHHHHHHHHH----CCCCcCHHHHH
Q 003122 376 NALMAAYASHGMSKEALSVFNEIK----KNGLCPDIVSYTSL-LNAYGRSQQPVKAREVFNMMRI----NNLKPNLVSYS 446 (846)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~~ 446 (846)
..++..+.+.|.+.+|+.+...+. +..-.++..+...+ -..|-+-.++.++..-+..... .-++|....--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 356777778888888877665443 32223332222111 1234444444444443333221 12344333333
Q ss_pred HHHHH--HHhCCCHHHHHHHHHHHHH
Q 003122 447 ALIDA--YGSNGLLAEAVEVFREMEQ 470 (846)
Q Consensus 447 ~li~~--~~~~g~~~~A~~~~~~~~~ 470 (846)
-|+.+ .|...++..|..+|-+..+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 33333 3445566677777766655
No 470
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.18 E-value=1.1e+02 Score=20.98 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=21.0
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003122 171 ARHNQIDKARGLFFEMQKWRCKPDAETYNALIS 203 (846)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 203 (846)
-+.|-++++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666677777777776666666666655543
No 471
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.67 E-value=2.8e+02 Score=32.46 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=88.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 517 SAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG 596 (846)
Q Consensus 517 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 596 (846)
++|..+.+.|-.+-|+.+.++-. +- ...+...|+++.|++.-.++ .+..+|..|+..-..+|
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~---------tR---F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qg 686 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDER---------TR---FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQG 686 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcc---------hh---eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhc
Confidence 34444555666666655443322 11 12234567777777665442 35668888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAE 676 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 676 (846)
+.+-|+..|+.... |+.|...|.-.|+.++-.++.+.+.. ..|..+. ...+ .-.|+.++-..+++
T Consensus 687 n~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~---r~D~~~~--~qna-lYl~dv~ervkIl~ 751 (1202)
T KOG0292|consen 687 NHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI---RNDATGQ--FQNA-LYLGDVKERVKILE 751 (1202)
T ss_pred chHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh---hhhhHHH--HHHH-HHhccHHHHHHHHH
Confidence 88888888876654 44455566777887777766665543 2232221 1111 12466666666655
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 003122 677 FMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEP 715 (846)
Q Consensus 677 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 715 (846)
..-. - +..|. .....|.-++|.++.+....
T Consensus 752 n~g~---~--~layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 752 NGGQ---L--PLAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred hcCc---c--cHHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 4322 1 11121 22345666777777776643
No 472
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.65 E-value=1.9e+02 Score=25.71 Aligned_cols=61 Identities=8% Similarity=0.005 Sum_probs=40.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 640 FLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR 701 (846)
Q Consensus 640 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 701 (846)
.+.+.+.|++++.. -..++..+.+.+..-.|.++++.+.+.++..+..+.+..+..+...|
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34445566665542 33456667777777888888888888777777777666666666655
No 473
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.32 E-value=5.1e+02 Score=27.46 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=12.0
Q ss_pred CCCHHHHHHHHHHHHH
Q 003122 455 NGLLAEAVEVFREMEQ 470 (846)
Q Consensus 455 ~g~~~~A~~~~~~~~~ 470 (846)
.+++...+++++++..
T Consensus 317 ~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 317 SSKYASCLELLREIKP 332 (466)
T ss_pred hhhHHHHHHHHHHhcc
Confidence 4678888888887765
No 474
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=38.23 E-value=2.8e+02 Score=34.04 Aligned_cols=100 Identities=11% Similarity=-0.017 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh-------ccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQM-------EPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS-----G- 752 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g- 752 (846)
....|..+...+.+.|+.++|+.+-.+. ...++..+...|..+.-.+...+....|...+.++... |
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 4455666666677777777776655543 12222224455556665556666666666666665441 1
Q ss_pred CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 753 AEANFN-TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 753 ~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
..|... +...+...+...++++.|+.+++.+..
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 123322 334444445555666677766666654
No 475
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.04 E-value=5.4e+02 Score=27.68 Aligned_cols=53 Identities=9% Similarity=0.043 Sum_probs=23.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH
Q 003122 382 YASHGMSKEALSVFNEIKKNGLCPDIVS---YTSLLNAYGRSQQPVKAREVFNMMRINNLKPNL 442 (846)
Q Consensus 382 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 442 (846)
.+..|..+ +.+.+.+.|..++... ..+++...+..|+.+ +.+.+.+.|..++.
T Consensus 175 A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 175 AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 34455543 3344445555554322 123444344455543 33444455555543
No 476
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=37.68 E-value=70 Score=20.74 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+|..|+..-...+++++|.+-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455666666666677777666666655
No 477
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=37.46 E-value=1.7e+02 Score=21.80 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=11.7
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003122 767 LLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~ 785 (846)
+-+.|++++|+..|.+..+
T Consensus 15 ~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHTTSHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 4456677777766666543
No 478
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=36.86 E-value=3.6e+02 Score=25.24 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC--------------cCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 003122 411 TSLLNAYGRSQQPVKAREVFNMMRINNLK--------------PNLVSYSALIDAYGSNGLLAEAVEVFR 466 (846)
Q Consensus 411 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 466 (846)
.+++..|-+.-++.++.++++.|.+..+. +--..-|.....+.+.|.+|.|+.+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 45677888888999999999988764321 222334555666777777777777666
No 479
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.75 E-value=98 Score=25.71 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 003122 127 FPFLIKEITQRGAINHSNQVFNWMKNQK 154 (846)
Q Consensus 127 ~~~l~~~~~~~g~~~~A~~~f~~~~~~~ 154 (846)
.+.++-.+.++...++|+++.+|+.+++
T Consensus 64 ~PtViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 64 NPTVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred CChHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3456677777788888888888888766
No 480
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=36.72 E-value=4.1e+02 Score=32.32 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcC--ChhHHHHHHHHHHHC
Q 003122 654 ACSALMRAFNKGG--QPSKVLLVAEFMREQ 681 (846)
Q Consensus 654 ~~~~l~~~~~~~g--~~~~A~~~~~~~~~~ 681 (846)
-...++.+|.+.+ +.++|+....++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3445666677666 667777777766654
No 481
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.58 E-value=4.8e+02 Score=26.61 Aligned_cols=60 Identities=10% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 691 FEMVLACSLLRDWKTTIDLIKQMEPSFHVVS-IGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
..++.+..+.|+..+|.+.++.+..+.|-.+ ..+..+|+.+|.+..-+.....++-+.-+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3455555667777777777777666655332 23344566666655555555444444433
No 482
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.91 E-value=2.3e+02 Score=24.39 Aligned_cols=46 Identities=11% Similarity=0.323 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 213 WAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTE 258 (846)
Q Consensus 213 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 258 (846)
+..+.++.+...++.|+..+.-.-+++|.+.+++..|.++|+-++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444455555566677777777777777777777777777776654
No 483
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=35.72 E-value=2.3e+02 Score=22.60 Aligned_cols=64 Identities=14% Similarity=0.054 Sum_probs=33.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESM 741 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 741 (846)
.+++..+.+.|+- ...-...+-.+-...|+.+.|.+++..+. .+|. ++...+.++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhh
Confidence 3455555555532 22222222222234566777777777766 4443 455666666666654444
No 484
>PF07149 Pes-10: Pes-10; InterPro: IPR009819 This family consists of several Caenorhabditis elegans pes-10 and related proteins. Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=35.58 E-value=5.3e+02 Score=26.87 Aligned_cols=61 Identities=11% Similarity=0.009 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 268 HNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTT-HNIVIYCLVKLGQYDKAIDLFHSMRE 328 (846)
Q Consensus 268 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~ 328 (846)
+-..+..|.+.|+-...-..........++++..- |.+---.+...-..+.|..++..+..
T Consensus 212 ~M~~La~~iksgn~~~I~~AI~~~~~~~~pL~lyrKYeI~~LI~~~~~~~~~A~~L~~~I~~ 273 (370)
T PF07149_consen 212 CMRNLAQSIKSGNEEKISAAIKFFGEFEFPLELYRKYEIQRLIEKHGIHNEDAMDLIDKIEE 273 (370)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 44456677888887766666666665544444321 22222222223335678888777754
No 485
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.44 E-value=40 Score=29.15 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003122 349 VNGQIENCKGVFNTMLAEGLKPNIVSYNALMAA 381 (846)
Q Consensus 349 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 381 (846)
+.|.-.+|..+|++|++.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 44666778888888888888777 46666654
No 486
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.27 E-value=4.4e+02 Score=25.82 Aligned_cols=18 Identities=6% Similarity=-0.285 Sum_probs=10.1
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003122 593 SKQGLIAEAESMFNMMKM 610 (846)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~ 610 (846)
-..|+.++|.++-+....
T Consensus 180 ei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 180 EILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HTSS-HHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHH
Confidence 346777776666555544
No 487
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.41 E-value=4.9e+02 Score=26.06 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=30.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhcCCHHHHH
Q 003122 448 LIDAYGSNGLLAEAVEVFREMEQDGIEPNIVS-------ICTLLAACGRCGRKVNID 497 (846)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-------~~~ll~~~~~~g~~~~a~ 497 (846)
+.+-..+.+++++|+..+.+.+..|+..|..+ ...+...|...|+.....
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 34445667778888888888877776655433 344455555555554433
No 488
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=34.37 E-value=3.6e+02 Score=29.56 Aligned_cols=26 Identities=8% Similarity=-0.028 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 759 TYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 759 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
.+..|+.++...+++.+|+.....+.
T Consensus 447 ah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 447 AHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 56666666666666666666555443
No 489
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=34.34 E-value=2.7e+02 Score=28.77 Aligned_cols=67 Identities=10% Similarity=0.191 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003122 317 DKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYA 383 (846)
Q Consensus 317 ~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 383 (846)
++...++..++..-|+...-+..|-+++......|.++.++.+|++++..|..|-...-..++..+-
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3445555555543333223356788888888888888888888888888888877666666666553
No 490
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=34.30 E-value=4.7e+02 Score=29.06 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 759 TYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 759 ~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
.|..++..|++.+++.+|+..|-.+
T Consensus 320 PYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 320 PYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cceehhhHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666555443
No 491
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.17 E-value=77 Score=31.88 Aligned_cols=30 Identities=7% Similarity=0.022 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 003122 410 YTSLLNAYGRSQQPVKAREVFNMMRINNLK 439 (846)
Q Consensus 410 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 439 (846)
|+.-|....+.|++++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 456666666666666666666666666543
No 492
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.79 E-value=4.7e+02 Score=25.65 Aligned_cols=57 Identities=14% Similarity=0.291 Sum_probs=28.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 003122 553 LISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYS-KQGLIAEAESMFNMMK 609 (846)
Q Consensus 553 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 609 (846)
++...-+.++++++..+++++...+...+..-.+.|..+|- ..|....+++++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 34445556666666666666666555555555555555553 2333444444444443
No 493
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=33.63 E-value=54 Score=25.11 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=31.6
Q ss_pred HHhcCCcchHHHHHHHHHHHhhccCCCCCCCCccCCC
Q 003122 802 AQTRGGAEYAAIIQERIESLRMKSGDPSFDQQSTSSS 838 (846)
Q Consensus 802 ~~~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~~~~~ 838 (846)
-.++|.+++|+.+.+++..+..--++.|+.+++.++.
T Consensus 62 RKrdGGFP~ak~LKQrvRD~idPeRDLGH~DR~~~t~ 98 (99)
T COG3526 62 RKRDGGFPEAKVLKQRVRDLIDPERDLGHVDRPSSTQ 98 (99)
T ss_pred eeccCCCCchHHHHHHHHhhcCcccccCCCCCcccCC
Confidence 3568899999999999999999899999998876654
No 494
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.49 E-value=6.1e+02 Score=26.92 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 196 ETYNALISAHGRAGQWRWAMNIFDDMLRAA--VAPSRSTYNNLINACGSTGNWREALKVCKKMTE 258 (846)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 258 (846)
..+.-+...|...|+++.|++.|......- .......|..++..-.-.|+|........+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345667788888888888888888754321 011233455566666667777776666665554
No 495
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.48 E-value=4.6e+02 Score=25.48 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=43.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 573 MMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMS-G-----------CSPDVITYTAMLHAYNTAEDWEKACALF 640 (846)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (846)
....+++-+.....+++ +...|+..+|+..++.-... | -.|.+.....++..+. .+++++|.+++
T Consensus 185 ~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il 261 (333)
T KOG0991|consen 185 AKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKIL 261 (333)
T ss_pred HHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHH
Confidence 33344555554444444 56678888877777654431 1 1345555555555443 35677777777
Q ss_pred HHHHHCCCCCCH
Q 003122 641 LEMETNNIEPDS 652 (846)
Q Consensus 641 ~~~~~~g~~p~~ 652 (846)
.++-+.|+.|..
T Consensus 262 ~~lw~lgysp~D 273 (333)
T KOG0991|consen 262 AELWKLGYSPED 273 (333)
T ss_pred HHHHHcCCCHHH
Confidence 777776666643
No 496
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.97 E-value=2.8e+02 Score=23.90 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 614 SPDVITYTAMLHAYNTAEDWEKACALFLEM 643 (846)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 643 (846)
.|++.....-+.++.+.+++..|+++|+-.
T Consensus 81 VP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 81 VPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred CCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334333344444444444444444444333
No 497
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.36 E-value=5.7e+02 Score=26.23 Aligned_cols=96 Identities=9% Similarity=-0.077 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HH
Q 003122 583 QVYSSVISAYSKQGLIAEAESMFNMMKM----SGCSPDVITYTA-MLHAYNTAEDWEKACALFLEMETNNIEPD----SI 653 (846)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~ 653 (846)
..+.....-||+.|+.+.|.+.+.+... .|.+.|++.+.. |+-.|....-..+-++..+.+.+.|..-+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4556667778888888888887766544 466666554433 33334444445566666666666664433 33
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
+|..+- |....++.+|-.+|-..+.
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 555543 3445678888888877764
No 498
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.33 E-value=3.3e+02 Score=23.50 Aligned_cols=42 Identities=12% Similarity=0.327 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 600 EAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFL 641 (846)
Q Consensus 600 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (846)
++.++|+.|...|+--. ...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444443322 3344444444444445555544444
No 499
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.21 E-value=4.9e+02 Score=29.37 Aligned_cols=139 Identities=12% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKY 776 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 776 (846)
+.+....+.+..+++.-.+.... +......-+..+..-|..+.|..+|++++. ..|| ..|+..+.-+.+.|-..+|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~ 93 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEAL-TSLAMLKKAEFLHDVNETERAYALYETLIA--QNND-EARYEYARRLYNTGLAKDA 93 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccch-hHHHHHHHhhhhhhhhhhHhHHHHHHHHHH--hCCc-chHHHHHHHHHhhhhhhHH
Q ss_pred HHHHHHHHHCCCCCCHH----hHHHHHHHHHhcCCcchHHH-----HHHHHHHHhhccCCCCCCCCccCCCccce
Q 003122 777 IEVLQWMEDAGIQPSYG----MFRDIVSFAQTRGGAEYAAI-----IQERIESLRMKSGDPSFDQQSTSSSSSIV 842 (846)
Q Consensus 777 ~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~-----~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 842 (846)
..+++ ....|.+.-.. ..+..+.++.+.+ -.+.. ..-.++......+...|...+..++.+..
T Consensus 94 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (578)
T PRK15490 94 QLILK-KVSNGVQKKYNNYLGKINKICDLLERLE--GKAIPVGTNTCIIAMKHAILFYRNRQPRQLPVGSFGRLA 165 (578)
T ss_pred HHHHH-HhCccHhHHHHHHHHHHHHHHHHHHHhc--cCCCCCccchHHHHHHHHHhhhhccCcCCCCcccccceE
No 500
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=31.68 E-value=2.9e+02 Score=25.64 Aligned_cols=67 Identities=13% Similarity=0.270 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCC
Q 003122 211 WRWAMNIFDDMLRAAVAP-------SRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQ 280 (846)
Q Consensus 211 ~~~A~~~~~~~~~~g~~~-------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 280 (846)
++.|+.+++.+.+.-..| ....--..+-.|.+.|.+++|.+++++.... |+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Done!