Query 003122
Match_columns 846
No_of_seqs 806 out of 4574
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 14:04:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.3E-41 1.8E-45 385.8 41.7 526 134-767 63-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4E-40 1.4E-44 378.4 41.5 521 205-802 63-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.2E-27 3.9E-32 258.4 49.2 377 382-771 9-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 9.4E-28 3.2E-32 259.1 47.5 380 413-806 5-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.7E-27 5.8E-32 260.6 25.8 186 162-349 28-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.5E-27 8.4E-32 259.3 26.2 204 214-419 9-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 3.5E-25 1.2E-29 248.8 39.4 455 300-795 6-485 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.1E-24 3.9E-29 244.7 42.9 450 268-758 9-483 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 4.3E-23 1.5E-27 227.5 42.1 382 371-812 25-445 (450)
10 3fp2_A TPR repeat-containing p 99.9 7.8E-24 2.7E-28 239.3 36.3 440 301-793 26-496 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 6.3E-23 2.1E-27 226.2 42.4 325 441-799 25-370 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.1E-22 3.8E-27 229.9 40.0 445 266-758 26-496 (537)
13 1xi4_A Clathrin heavy chain; a 99.9 2.5E-18 8.4E-23 197.7 68.0 340 413-806 1055-1415(1630)
14 1xi4_A Clathrin heavy chain; a 99.9 1.1E-17 3.6E-22 192.6 64.7 381 304-742 989-1375(1630)
15 3ieg_A DNAJ homolog subfamily 99.9 9.1E-20 3.1E-24 193.9 39.8 314 444-791 5-338 (359)
16 3ieg_A DNAJ homolog subfamily 99.9 1.8E-19 6.2E-24 191.6 40.4 303 511-824 2-338 (359)
17 2xm6_A Protein corresponding t 99.9 2.8E-18 9.4E-23 190.7 51.5 350 371-750 38-431 (490)
18 2xm6_A Protein corresponding t 99.9 5.9E-18 2E-22 188.0 51.4 369 350-750 56-466 (490)
19 3hym_B Cell division cycle pro 99.9 1.7E-19 5.9E-24 189.3 30.8 285 509-802 19-314 (330)
20 2ooe_A Cleavage stimulation fa 99.9 2.4E-17 8.2E-22 185.1 48.6 218 564-786 255-492 (530)
21 3hym_B Cell division cycle pro 99.9 3.8E-19 1.3E-23 186.7 31.6 285 482-774 27-322 (330)
22 2ooe_A Cleavage stimulation fa 99.8 2.2E-17 7.4E-22 185.5 45.7 221 599-824 255-495 (530)
23 1fch_A Peroxisomal targeting s 99.8 3.2E-19 1.1E-23 190.6 24.8 257 514-781 66-354 (368)
24 1fch_A Peroxisomal targeting s 99.8 2.8E-19 9.6E-24 191.0 24.1 291 522-821 35-359 (368)
25 4eqf_A PEX5-related protein; a 99.8 7.9E-19 2.7E-23 187.3 23.7 260 512-781 65-351 (365)
26 4eqf_A PEX5-related protein; a 99.8 1.3E-18 4.4E-23 185.6 24.5 265 546-817 64-352 (365)
27 3cv0_A Peroxisome targeting si 99.8 6.8E-18 2.3E-22 176.8 25.7 263 512-783 21-312 (327)
28 4g1t_A Interferon-induced prot 99.8 4.4E-17 1.5E-21 180.5 32.5 382 372-787 51-460 (472)
29 3mkr_A Coatomer subunit epsilo 99.8 1.6E-17 5.6E-22 169.6 26.5 256 521-794 8-270 (291)
30 4g1t_A Interferon-induced prot 99.8 1.1E-16 3.6E-21 177.4 34.7 383 336-755 50-461 (472)
31 3cv0_A Peroxisome targeting si 99.8 1.6E-17 5.3E-22 174.1 25.0 266 548-823 22-317 (327)
32 3mkr_A Coatomer subunit epsilo 99.8 4.8E-17 1.6E-21 166.1 26.4 246 515-779 37-287 (291)
33 1b89_A Protein (clathrin heavy 99.8 8.8E-17 3E-21 166.8 25.5 283 136-465 15-305 (449)
34 1b89_A Protein (clathrin heavy 99.7 3.7E-17 1.3E-21 169.6 19.5 281 312-673 15-303 (449)
35 2pl2_A Hypothetical conserved 99.7 1.6E-16 5.5E-21 154.9 21.0 198 579-784 2-212 (217)
36 3uq3_A Heat shock protein STI1 99.7 4.3E-16 1.5E-20 156.8 24.8 223 548-785 6-235 (258)
37 3uq3_A Heat shock protein STI1 99.7 1.5E-15 5E-20 152.8 24.4 226 512-754 5-237 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.7 8.8E-17 3E-21 179.6 14.9 113 196-308 128-244 (1134)
39 2h6f_A Protein farnesyltransfe 99.7 3.1E-15 1E-19 157.8 26.0 245 512-766 97-362 (382)
40 3u4t_A TPR repeat-containing p 99.7 2.6E-15 8.7E-20 152.5 24.3 236 550-793 6-255 (272)
41 2pl2_A Hypothetical conserved 99.7 1.7E-15 5.9E-20 147.5 22.0 198 614-819 2-212 (217)
42 3spa_A Mtrpol, DNA-directed RN 99.7 5.9E-17 2E-21 181.0 12.7 165 158-327 125-308 (1134)
43 2h6f_A Protein farnesyltransfe 99.7 3.5E-15 1.2E-19 157.4 25.0 244 547-801 97-362 (382)
44 3e4b_A ALGK; tetratricopeptide 99.7 8.1E-15 2.8E-19 160.0 27.1 346 378-788 9-389 (452)
45 3u4t_A TPR repeat-containing p 99.7 7.7E-15 2.6E-19 149.0 25.2 238 583-825 4-254 (272)
46 3e4b_A ALGK; tetratricopeptide 99.7 5.6E-15 1.9E-19 161.2 25.5 110 630-750 264-386 (452)
47 1ouv_A Conserved hypothetical 99.7 8.6E-14 2.9E-18 141.3 32.1 224 546-787 5-252 (273)
48 1xnf_A Lipoprotein NLPI; TPR, 99.7 4.5E-15 1.5E-19 150.9 22.7 247 524-780 17-269 (275)
49 1ouv_A Conserved hypothetical 99.7 1.2E-13 4E-18 140.2 32.2 228 511-758 5-256 (273)
50 2ho1_A Type 4 fimbrial biogene 99.6 5E-14 1.7E-18 141.1 26.3 198 583-785 38-237 (252)
51 2q7f_A YRRB protein; TPR, prot 99.6 8.7E-15 3E-19 145.7 20.3 198 582-785 23-221 (243)
52 2ho1_A Type 4 fimbrial biogene 99.6 7.3E-14 2.5E-18 139.8 27.0 208 547-760 37-245 (252)
53 2q7f_A YRRB protein; TPR, prot 99.6 1.2E-14 4.1E-19 144.6 20.4 214 547-767 23-237 (243)
54 4e6h_A MRNA 3'-END-processing 99.6 1.3E-11 4.4E-16 138.8 46.0 217 565-786 327-570 (679)
55 3sf4_A G-protein-signaling mod 99.6 1E-14 3.4E-19 157.8 19.3 311 511-824 8-380 (406)
56 2vq2_A PILW, putative fimbrial 99.6 1.1E-13 3.6E-18 135.8 25.0 200 581-785 7-210 (225)
57 2vq2_A PILW, putative fimbrial 99.6 2.1E-13 7.1E-18 133.7 26.7 208 547-759 8-217 (225)
58 3vtx_A MAMA; tetratricopeptide 99.6 5E-14 1.7E-18 133.4 21.3 164 616-785 4-169 (184)
59 4a1s_A PINS, partner of inscut 99.6 1.3E-14 4.3E-19 157.4 19.0 270 514-786 50-372 (411)
60 4abn_A Tetratricopeptide repea 99.6 1.8E-14 6.3E-19 158.2 19.9 214 563-783 84-318 (474)
61 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.2E-14 1.8E-18 143.0 21.6 245 558-814 16-268 (275)
62 4a1s_A PINS, partner of inscut 99.6 2.3E-14 7.8E-19 155.3 19.8 274 549-825 50-376 (411)
63 3sf4_A G-protein-signaling mod 99.6 5.2E-14 1.8E-18 152.1 22.6 279 544-825 6-340 (406)
64 3vtx_A MAMA; tetratricopeptide 99.6 1.5E-13 5.2E-18 130.0 22.6 175 580-760 3-177 (184)
65 4e6h_A MRNA 3'-END-processing 99.6 7.7E-11 2.6E-15 132.6 45.8 471 249-767 51-584 (679)
66 3ro2_A PINS homolog, G-protein 99.6 7.5E-14 2.6E-18 146.4 20.1 268 515-785 8-331 (338)
67 3ro2_A PINS homolog, G-protein 99.6 9.9E-14 3.4E-18 145.4 20.2 274 549-825 7-336 (338)
68 3ulq_A Response regulator aspa 99.5 7.7E-13 2.6E-17 141.6 23.8 234 588-827 109-374 (383)
69 3ulq_A Response regulator aspa 99.5 5.5E-13 1.9E-17 142.8 22.5 230 553-785 109-367 (383)
70 4gyw_A UDP-N-acetylglucosamine 99.5 2.4E-13 8.1E-18 155.0 20.3 163 617-785 9-173 (723)
71 2ond_A Cleavage stimulation fa 99.5 6.5E-12 2.2E-16 129.7 29.2 233 548-786 9-270 (308)
72 4abn_A Tetratricopeptide repea 99.5 3.1E-13 1E-17 148.4 19.5 210 597-816 83-316 (474)
73 2ond_A Cleavage stimulation fa 99.5 6.8E-12 2.3E-16 129.5 28.1 222 529-757 33-274 (308)
74 3nf1_A KLC 1, kinesin light ch 99.5 1.2E-13 4.2E-18 143.0 14.6 247 511-785 26-306 (311)
75 3nf1_A KLC 1, kinesin light ch 99.5 1.2E-13 4.3E-18 143.0 13.7 256 476-755 26-309 (311)
76 4i17_A Hypothetical protein; T 99.5 2.5E-12 8.6E-17 126.4 21.8 200 580-793 5-214 (228)
77 4gyw_A UDP-N-acetylglucosamine 99.5 1.4E-12 4.6E-17 148.7 20.5 171 649-825 5-178 (723)
78 3q15_A PSP28, response regulat 99.5 9.5E-12 3.3E-16 132.8 25.0 236 587-826 106-370 (378)
79 3q15_A PSP28, response regulat 99.4 1.3E-11 4.3E-16 131.8 23.4 229 553-785 107-364 (378)
80 1hz4_A MALT regulatory protein 99.4 1.1E-10 3.7E-15 124.3 30.8 270 516-785 18-321 (373)
81 4i17_A Hypothetical protein; T 99.4 2.9E-11 1E-15 118.7 23.3 207 545-765 5-222 (228)
82 3as5_A MAMA; tetratricopeptide 99.4 1.3E-11 4.3E-16 116.5 19.2 163 618-785 9-172 (186)
83 3as5_A MAMA; tetratricopeptide 99.4 2.6E-11 9E-16 114.3 18.6 168 583-756 9-176 (186)
84 1qqe_A Vesicular transport pro 99.3 3.1E-11 1.1E-15 123.4 19.4 192 591-784 46-267 (292)
85 3urz_A Uncharacterized protein 99.3 2.6E-11 8.8E-16 116.9 17.4 131 658-794 60-192 (208)
86 1hz4_A MALT regulatory protein 99.3 3.6E-10 1.2E-14 120.3 28.0 271 552-824 19-325 (373)
87 3edt_B KLC 2, kinesin light ch 99.3 2.3E-11 7.8E-16 123.7 16.2 201 583-785 44-280 (283)
88 3edt_B KLC 2, kinesin light ch 99.3 6.8E-11 2.3E-15 120.2 17.9 203 547-750 43-280 (283)
89 3qky_A Outer membrane assembly 99.3 8.4E-11 2.9E-15 118.1 18.3 184 580-785 13-223 (261)
90 1qqe_A Vesicular transport pro 99.3 1E-10 3.4E-15 119.5 18.8 213 527-758 32-274 (292)
91 3qky_A Outer membrane assembly 99.3 1.8E-10 6E-15 115.7 19.5 169 617-824 15-227 (261)
92 4ga2_A E3 SUMO-protein ligase 99.3 1E-11 3.5E-16 112.5 9.1 142 624-771 4-148 (150)
93 3urz_A Uncharacterized protein 99.3 2.8E-10 9.6E-15 109.6 19.4 136 623-765 60-198 (208)
94 3rjv_A Putative SEL1 repeat pr 99.2 6.9E-10 2.4E-14 107.1 21.0 176 600-787 4-198 (212)
95 2yhc_A BAMD, UPF0169 lipoprote 99.2 5.1E-10 1.7E-14 109.3 20.0 184 581-787 3-214 (225)
96 2pzi_A Probable serine/threoni 99.2 7E-11 2.4E-15 135.7 15.5 173 558-737 402-583 (681)
97 3dra_A Protein farnesyltransfe 99.2 5.2E-09 1.8E-13 105.5 26.4 219 562-785 48-286 (306)
98 4ga2_A E3 SUMO-protein ligase 99.2 2.7E-11 9.2E-16 109.7 8.8 144 658-807 3-149 (150)
99 2pzi_A Probable serine/threoni 99.2 1E-09 3.5E-14 126.0 20.9 189 523-718 402-607 (681)
100 2r5s_A Uncharacterized protein 99.1 3.2E-10 1.1E-14 105.9 12.9 155 623-784 12-171 (176)
101 2fo7_A Synthetic consensus TPR 99.1 1.3E-09 4.4E-14 96.3 16.1 127 655-785 4-131 (136)
102 3dra_A Protein farnesyltransfe 99.1 9.3E-09 3.2E-13 103.7 24.0 218 595-820 46-286 (306)
103 3qou_A Protein YBBN; thioredox 99.1 7.3E-10 2.5E-14 112.6 16.0 162 617-784 117-282 (287)
104 3mv2_B Coatomer subunit epsilo 99.1 1E-08 3.5E-13 102.0 23.3 79 531-610 85-164 (310)
105 3qou_A Protein YBBN; thioredox 99.1 2.2E-09 7.7E-14 109.0 18.7 166 649-820 114-283 (287)
106 3mv2_B Coatomer subunit epsilo 99.1 1.1E-08 3.8E-13 101.8 22.9 245 523-793 24-287 (310)
107 2ifu_A Gamma-SNAP; membrane fu 99.1 1E-09 3.6E-14 112.9 16.3 156 626-784 45-222 (307)
108 2r5s_A Uncharacterized protein 99.1 1.2E-09 4.2E-14 101.9 15.1 160 654-820 8-172 (176)
109 2yhc_A BAMD, UPF0169 lipoprote 99.1 4.4E-09 1.5E-13 102.6 19.6 187 546-756 3-216 (225)
110 2fo7_A Synthetic consensus TPR 99.1 2.8E-09 9.6E-14 94.0 16.5 132 620-756 4-135 (136)
111 3rjv_A Putative SEL1 repeat pr 99.1 1.4E-08 4.8E-13 97.8 21.4 176 565-752 4-198 (212)
112 3gyz_A Chaperone protein IPGC; 99.1 7.3E-10 2.5E-14 99.5 10.9 103 686-793 35-138 (151)
113 4gco_A Protein STI-1; structur 99.1 1.8E-09 6E-14 94.1 12.9 92 691-785 17-109 (126)
114 2vsy_A XCC0866; transferase, g 99.1 2.2E-09 7.4E-14 121.3 17.2 163 595-764 2-169 (568)
115 2ifu_A Gamma-SNAP; membrane fu 99.0 3.4E-09 1.2E-13 109.0 15.8 199 560-778 29-253 (307)
116 2uy1_A Cleavage stimulation fa 99.0 8.7E-07 3E-11 96.8 35.4 124 619-750 288-412 (493)
117 2vsy_A XCC0866; transferase, g 99.0 4.3E-09 1.5E-13 118.8 16.9 164 560-729 2-169 (568)
118 3u3w_A Transcriptional activat 99.0 5.1E-08 1.7E-12 99.4 23.4 160 624-785 82-265 (293)
119 3dss_A Geranylgeranyl transfer 99.0 1.8E-07 6.1E-12 94.7 26.3 225 565-799 48-316 (331)
120 2qfc_A PLCR protein; TPR, HTH, 99.0 7.1E-08 2.4E-12 98.4 23.8 164 619-785 77-265 (293)
121 4gco_A Protein STI-1; structur 99.0 7.6E-09 2.6E-13 90.0 13.6 115 648-766 8-124 (126)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.7E-08 6E-13 97.4 17.7 129 622-757 11-154 (213)
123 2uy1_A Cleavage stimulation fa 99.0 5.1E-07 1.7E-11 98.7 31.2 377 384-820 6-412 (493)
124 3dss_A Geranylgeranyl transfer 99.0 9.2E-08 3.1E-12 96.9 23.3 223 593-824 40-307 (331)
125 3gyz_A Chaperone protein IPGC; 99.0 4.1E-09 1.4E-13 94.6 12.0 107 648-758 31-138 (151)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.9 3.3E-08 1.1E-12 95.4 18.3 131 653-792 7-154 (213)
127 2vgx_A Chaperone SYCD; alterna 98.9 2.4E-09 8.4E-14 96.3 9.3 108 674-785 9-117 (148)
128 3q7a_A Farnesyltransferase alp 98.9 2.3E-07 7.7E-12 94.4 24.1 221 560-785 67-330 (349)
129 4f3v_A ESX-1 secretion system 98.9 2.9E-08 1E-12 97.4 16.6 190 594-791 18-240 (282)
130 1a17_A Serine/threonine protei 98.9 2.6E-08 8.8E-13 91.6 15.5 126 654-783 15-143 (166)
131 3q7a_A Farnesyltransferase alp 98.9 2.2E-07 7.4E-12 94.5 23.0 222 593-820 65-330 (349)
132 2qfc_A PLCR protein; TPR, HTH, 98.9 2E-07 6.8E-12 95.0 22.8 174 654-827 77-272 (293)
133 4gcn_A Protein STI-1; structur 98.9 1.5E-08 5E-13 88.4 12.1 104 689-797 10-121 (127)
134 2e2e_A Formate-dependent nitri 98.9 1.5E-08 5.1E-13 94.6 12.9 120 663-786 21-144 (177)
135 2c2l_A CHIP, carboxy terminus 98.9 9.5E-09 3.2E-13 103.9 12.0 191 580-786 2-199 (281)
136 2lni_A Stress-induced-phosphop 98.9 3.9E-08 1.3E-12 86.4 14.1 116 652-771 16-132 (133)
137 4f3v_A ESX-1 secretion system 98.8 2.7E-08 9.1E-13 97.7 13.9 204 626-836 16-258 (282)
138 3u3w_A Transcriptional activat 98.8 5.5E-07 1.9E-11 91.7 24.2 174 657-830 80-275 (293)
139 1p5q_A FKBP52, FK506-binding p 98.8 4.2E-08 1.4E-12 102.0 15.4 130 653-785 148-293 (336)
140 2xcb_A PCRH, regulatory protei 98.8 1E-08 3.5E-13 91.6 9.0 97 686-785 17-114 (142)
141 2vgx_A Chaperone SYCD; alterna 98.8 1.4E-08 4.7E-13 91.3 9.7 113 639-757 9-122 (148)
142 2vyi_A SGTA protein; chaperone 98.8 6.4E-08 2.2E-12 84.6 13.7 117 653-773 13-130 (131)
143 1a17_A Serine/threonine protei 98.8 1.5E-07 5E-12 86.4 16.5 136 687-827 13-152 (166)
144 2c2l_A CHIP, carboxy terminus 98.8 3E-08 1E-12 100.2 12.7 218 616-845 3-225 (281)
145 1na0_A Designed protein CTPR3; 98.8 1.4E-07 4.8E-12 81.5 14.7 111 654-768 11-122 (125)
146 3gw4_A Uncharacterized protein 98.8 6.7E-08 2.3E-12 92.3 13.5 96 690-785 69-175 (203)
147 3upv_A Heat shock protein STI1 98.8 1.2E-07 4.2E-12 82.4 13.8 95 688-785 5-100 (126)
148 2fbn_A 70 kDa peptidylprolyl i 98.8 8.3E-09 2.9E-13 98.3 6.8 152 629-784 16-184 (198)
149 4gcn_A Protein STI-1; structur 98.7 1E-07 3.5E-12 83.0 12.9 105 654-761 10-120 (127)
150 2e2e_A Formate-dependent nitri 98.7 3.7E-08 1.3E-12 91.8 10.7 124 629-757 22-148 (177)
151 3upv_A Heat shock protein STI1 98.7 1.1E-07 3.9E-12 82.7 12.9 98 653-754 5-102 (126)
152 1p5q_A FKBP52, FK506-binding p 98.7 1.3E-07 4.4E-12 98.3 14.7 130 617-750 147-293 (336)
153 3gw4_A Uncharacterized protein 98.7 1.7E-07 5.9E-12 89.4 14.2 139 687-827 26-182 (203)
154 1hxi_A PEX5, peroxisome target 98.7 7.5E-08 2.6E-12 82.9 10.0 94 689-785 19-113 (121)
155 2vyi_A SGTA protein; chaperone 98.7 4.7E-07 1.6E-11 78.9 15.0 118 686-808 11-130 (131)
156 2xcb_A PCRH, regulatory protei 98.7 1.4E-07 4.9E-12 84.0 11.6 103 652-758 18-120 (142)
157 2lni_A Stress-induced-phosphop 98.7 3.5E-07 1.2E-11 80.2 13.7 117 617-736 16-132 (133)
158 1elw_A TPR1-domain of HOP; HOP 98.6 5.4E-07 1.8E-11 76.9 14.4 91 692-785 9-100 (118)
159 3sz7_A HSC70 cochaperone (SGT) 98.6 2.5E-07 8.6E-12 84.8 12.7 93 690-785 14-107 (164)
160 1na0_A Designed protein CTPR3; 98.6 7.3E-07 2.5E-11 76.9 15.1 97 583-681 10-106 (125)
161 1hxi_A PEX5, peroxisome target 98.6 1.8E-07 6.2E-12 80.5 10.4 99 655-757 20-118 (121)
162 3sz7_A HSC70 cochaperone (SGT) 98.6 3.1E-07 1.1E-11 84.2 12.7 104 651-758 10-113 (164)
163 3q49_B STIP1 homology and U bo 98.6 3.5E-07 1.2E-11 80.8 12.5 95 688-785 10-105 (137)
164 1elw_A TPR1-domain of HOP; HOP 98.6 9.3E-07 3.2E-11 75.3 13.8 112 651-766 3-115 (118)
165 3q49_B STIP1 homology and U bo 98.6 6.8E-07 2.3E-11 78.9 13.1 104 649-756 6-109 (137)
166 1elr_A TPR2A-domain of HOP; HO 98.6 4E-07 1.4E-11 79.4 11.4 91 692-785 9-107 (131)
167 1elr_A TPR2A-domain of HOP; HO 98.6 5.5E-07 1.9E-11 78.5 12.3 115 652-769 4-124 (131)
168 1dce_A Protein (RAB geranylger 98.6 2.2E-06 7.4E-11 95.2 19.6 173 597-775 44-244 (567)
169 2hr2_A Hypothetical protein; a 98.5 7.5E-07 2.6E-11 78.7 12.0 107 653-785 12-130 (159)
170 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 6E-07 2E-11 97.6 14.0 96 687-785 317-414 (457)
171 2dba_A Smooth muscle cell asso 98.5 1.2E-06 4E-11 78.4 13.8 61 723-785 66-127 (148)
172 2fbn_A 70 kDa peptidylprolyl i 98.5 9E-07 3.1E-11 84.0 13.4 129 618-750 39-185 (198)
173 3rkv_A Putative peptidylprolyl 98.5 7.4E-07 2.5E-11 81.4 12.3 114 652-793 11-131 (162)
174 1wao_1 Serine/threonine protei 98.5 3E-07 1E-11 100.4 11.2 116 662-781 16-134 (477)
175 2xev_A YBGF; tetratricopeptide 98.5 1.6E-06 5.5E-11 75.5 13.6 95 690-786 5-105 (129)
176 2hr2_A Hypothetical protein; a 98.5 6.3E-07 2.2E-11 79.1 10.1 106 617-755 11-133 (159)
177 2dba_A Smooth muscle cell asso 98.5 3.1E-06 1.1E-10 75.6 15.2 63 690-755 68-130 (148)
178 3rkv_A Putative peptidylprolyl 98.5 7.5E-07 2.6E-11 81.4 10.6 121 617-758 11-131 (162)
179 2if4_A ATFKBP42; FKBP-like, al 98.4 5.6E-07 1.9E-11 93.5 10.7 145 619-785 181-327 (338)
180 2kck_A TPR repeat; tetratricop 98.4 9.6E-07 3.3E-11 74.4 10.4 97 687-786 6-106 (112)
181 3ro3_A PINS homolog, G-protein 98.4 9.1E-07 3.1E-11 80.5 11.0 64 722-785 89-157 (164)
182 1dce_A Protein (RAB geranylger 98.4 5.6E-06 1.9E-10 91.9 19.2 169 631-807 43-241 (567)
183 2xev_A YBGF; tetratricopeptide 98.4 3.9E-06 1.4E-10 72.9 14.1 100 656-758 6-110 (129)
184 4b4t_Q 26S proteasome regulato 98.4 6.2E-06 2.1E-10 89.3 18.7 56 555-610 12-83 (434)
185 1ihg_A Cyclophilin 40; ppiase 98.4 1.3E-06 4.3E-11 91.8 12.4 86 688-776 274-360 (370)
186 1zu2_A Mitochondrial import re 98.4 5.4E-07 1.8E-11 79.4 7.1 94 702-800 17-132 (158)
187 3ro3_A PINS homolog, G-protein 98.4 1.9E-06 6.7E-11 78.2 11.1 101 723-825 50-162 (164)
188 3k9i_A BH0479 protein; putativ 98.4 5.3E-07 1.8E-11 77.1 6.7 84 700-786 3-90 (117)
189 1wao_1 Serine/threonine protei 98.4 1.7E-06 5.8E-11 94.4 12.1 119 589-711 13-134 (477)
190 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3E-06 1E-10 92.1 13.9 130 617-750 268-414 (457)
191 2if4_A ATFKBP42; FKBP-like, al 98.3 8.6E-07 3E-11 92.0 8.6 149 653-824 180-331 (338)
192 3k9i_A BH0479 protein; putativ 98.3 6.7E-07 2.3E-11 76.4 6.5 90 664-757 2-94 (117)
193 4b4t_Q 26S proteasome regulato 98.3 2.1E-05 7.3E-10 85.0 19.6 197 519-715 11-244 (434)
194 2kck_A TPR repeat; tetratricop 98.3 6.4E-06 2.2E-10 69.2 11.9 96 584-681 8-106 (112)
195 1zu2_A Mitochondrial import re 98.3 1.1E-06 3.7E-11 77.4 6.8 92 666-761 16-128 (158)
196 1ihg_A Cyclophilin 40; ppiase 98.3 4.8E-06 1.6E-10 87.3 13.1 131 652-806 223-355 (370)
197 2l6j_A TPR repeat-containing p 98.2 1.2E-06 4.2E-11 73.8 4.2 92 687-781 4-102 (111)
198 2kat_A Uncharacterized protein 98.1 1.1E-05 3.7E-10 68.5 9.9 62 722-785 19-81 (115)
199 3n71_A Histone lysine methyltr 98.1 5.2E-05 1.8E-09 81.9 15.9 131 627-786 319-464 (490)
200 2kat_A Uncharacterized protein 98.0 5.8E-05 2E-09 63.8 12.7 83 669-755 2-84 (115)
201 1na3_A Designed protein CTPR2; 98.0 2.5E-05 8.4E-10 62.7 9.1 60 724-785 11-71 (91)
202 3ma5_A Tetratricopeptide repea 98.0 2.5E-05 8.7E-10 64.1 8.4 63 721-785 6-69 (100)
203 2l6j_A TPR repeat-containing p 97.9 4.5E-05 1.5E-09 63.9 9.8 68 721-792 3-71 (111)
204 1klx_A Cysteine rich protein B 97.9 0.00013 4.5E-09 64.0 13.1 110 667-787 10-127 (138)
205 1klx_A Cysteine rich protein B 97.9 0.00038 1.3E-08 61.0 15.4 110 562-682 10-127 (138)
206 3n71_A Histone lysine methyltr 97.9 6E-05 2.1E-09 81.4 12.1 102 721-822 350-465 (490)
207 1na3_A Designed protein CTPR2; 97.8 0.00014 4.9E-09 58.1 10.7 83 686-771 8-91 (91)
208 3ma5_A Tetratricopeptide repea 97.8 8.1E-05 2.8E-09 61.0 8.7 64 686-750 6-69 (100)
209 3ly7_A Transcriptional activat 97.8 0.00073 2.5E-08 68.4 17.2 71 721-795 276-346 (372)
210 3qww_A SET and MYND domain-con 97.6 0.00022 7.6E-09 75.6 11.0 65 721-785 339-410 (433)
211 3qwp_A SET and MYND domain-con 97.6 0.00049 1.7E-08 73.2 13.0 92 721-825 328-426 (429)
212 3bee_A Putative YFRE protein; 97.5 0.00075 2.6E-08 54.0 9.6 64 721-786 5-72 (93)
213 3u64_A Protein TP_0956; tetrat 97.4 0.01 3.5E-07 57.4 18.8 92 703-796 179-281 (301)
214 2kc7_A BFR218_protein; tetratr 97.4 0.00019 6.6E-09 58.5 6.1 54 696-750 9-63 (99)
215 2kc7_A BFR218_protein; tetratr 97.4 0.00017 5.8E-09 58.9 5.2 58 624-683 7-66 (99)
216 3ly7_A Transcriptional activat 97.3 0.0053 1.8E-07 62.2 16.0 74 686-763 276-349 (372)
217 1pc2_A Mitochondria fission pr 97.2 0.0022 7.6E-08 55.7 10.6 83 705-792 16-104 (152)
218 1pc2_A Mitochondria fission pr 97.2 0.0023 7.8E-08 55.6 10.2 87 668-757 14-104 (152)
219 3qww_A SET and MYND domain-con 97.1 0.0033 1.1E-07 66.6 12.6 93 629-750 310-410 (433)
220 3u64_A Protein TP_0956; tetrat 97.0 0.024 8.2E-07 54.9 16.2 110 668-783 179-295 (301)
221 3qwp_A SET and MYND domain-con 96.9 0.0092 3.2E-07 63.3 14.1 95 627-750 297-399 (429)
222 3bee_A Putative YFRE protein; 96.9 0.0032 1.1E-07 50.2 8.0 68 686-756 5-75 (93)
223 3mkq_A Coatomer beta'-subunit; 96.8 0.051 1.7E-06 63.7 21.3 188 523-776 610-802 (814)
224 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0061 2.1E-07 50.0 9.4 69 687-757 5-79 (104)
225 2v5f_A Prolyl 4-hydroxylase su 96.5 0.019 6.7E-07 46.9 10.5 72 721-794 4-81 (104)
226 1nzn_A CGI-135 protein, fissio 96.5 0.013 4.5E-07 48.8 9.1 82 671-755 20-105 (126)
227 3mkq_A Coatomer beta'-subunit; 96.4 0.14 5E-06 59.8 21.1 29 511-539 680-708 (814)
228 1nzn_A CGI-135 protein, fissio 95.9 0.086 3E-06 43.9 10.8 91 703-798 17-113 (126)
229 3o48_A Mitochondria fission 1 95.6 0.13 4.5E-06 42.9 10.8 78 717-798 35-117 (134)
230 3mkq_B Coatomer subunit alpha; 95.6 0.84 2.9E-05 40.6 16.7 103 415-538 13-115 (177)
231 4gns_B Protein CSD3, chitin bi 95.5 0.06 2.1E-06 60.5 11.1 57 725-783 340-397 (754)
232 3mkq_B Coatomer subunit alpha; 95.4 0.84 2.9E-05 40.6 16.2 44 277-326 17-60 (177)
233 1y8m_A FIS1; mitochondria, unk 95.1 0.34 1.2E-05 41.0 11.9 72 719-794 36-112 (144)
234 4ady_A RPN2, 26S proteasome re 95.1 6.5 0.00022 45.2 44.2 259 415-680 382-657 (963)
235 3lvg_A Clathrin heavy chain 1; 94.9 0.00028 9.7E-09 72.5 -8.7 431 196-710 55-535 (624)
236 1wy6_A Hypothetical protein ST 94.8 1.5 5E-05 36.6 15.5 62 727-789 96-157 (172)
237 3o48_A Mitochondria fission 1 94.8 0.16 5.3E-06 42.5 8.8 74 682-757 35-111 (134)
238 4h7y_A Dual specificity protei 94.4 0.42 1.4E-05 40.8 10.8 110 650-790 11-127 (161)
239 1y8m_A FIS1; mitochondria, unk 94.4 0.48 1.6E-05 40.1 11.0 73 683-757 35-110 (144)
240 4h7y_A Dual specificity protei 94.4 0.35 1.2E-05 41.2 10.1 100 614-750 10-122 (161)
241 4b4t_P 26S proteasome regulato 93.7 3.1 0.00011 44.0 18.9 94 586-679 141-245 (445)
242 2ff4_A Probable regulatory pro 93.2 1 3.4E-05 46.9 13.7 122 664-804 127-257 (388)
243 1wy6_A Hypothetical protein ST 93.2 3.2 0.00011 34.6 15.2 68 686-754 90-157 (172)
244 3ffl_A Anaphase-promoting comp 92.9 0.7 2.4E-05 40.4 9.8 32 687-718 122-153 (167)
245 3lpz_A GET4 (YOR164C homolog); 92.3 9.7 0.00033 37.8 20.7 19 767-785 197-215 (336)
246 4b4t_P 26S proteasome regulato 92.0 6 0.00021 41.8 18.0 50 561-610 30-84 (445)
247 1zbp_A Hypothetical protein VP 91.6 3.5 0.00012 39.3 13.7 55 699-756 9-63 (273)
248 4ady_A RPN2, 26S proteasome re 91.2 25 0.00087 40.4 50.5 255 450-715 382-657 (963)
249 3lvg_A Clathrin heavy chain 1; 91.1 7.9E-06 2.7E-10 83.6 -26.7 242 513-782 55-316 (624)
250 3ffl_A Anaphase-promoting comp 90.9 1.6 5.6E-05 38.1 9.9 28 756-783 121-148 (167)
251 4fhn_B Nucleoporin NUP120; pro 90.5 6.9 0.00023 47.3 18.7 149 585-741 815-990 (1139)
252 1zbp_A Hypothetical protein VP 90.3 4.4 0.00015 38.6 13.0 115 661-786 6-129 (273)
253 4gns_B Protein CSD3, chitin bi 90.2 1.6 5.3E-05 49.2 11.6 45 760-806 616-660 (754)
254 4fhn_B Nucleoporin NUP120; pro 90.1 12 0.00043 45.0 20.4 144 617-785 899-1049(1139)
255 3txn_A 26S proteasome regulato 89.5 21 0.00071 36.7 22.5 168 512-680 19-209 (394)
256 1qsa_A Protein (soluble lytic 85.8 46 0.0016 36.6 34.1 116 596-715 228-347 (618)
257 2wpv_A GET4, UPF0363 protein Y 84.8 32 0.0011 33.9 21.2 165 587-785 38-216 (312)
258 3esl_A Checkpoint serine/threo 84.1 12 0.00041 33.9 11.5 73 724-797 82-155 (202)
259 2ff4_A Probable regulatory pro 83.8 4.6 0.00016 41.8 10.2 69 303-374 174-247 (388)
260 3ltm_A Alpha-REP4; protein eng 81.5 32 0.0011 31.5 16.6 30 298-328 155-184 (211)
261 4b4t_R RPN7, 26S proteasome re 81.3 12 0.0004 39.4 12.3 95 619-713 133-234 (429)
262 2wpv_A GET4, UPF0363 protein Y 81.3 44 0.0015 32.9 22.9 167 549-750 35-216 (312)
263 1qsa_A Protein (soluble lytic 80.0 76 0.0026 34.9 33.5 201 561-780 228-436 (618)
264 1v54_E Cytochrome C oxidase po 78.6 13 0.00043 29.2 8.1 63 210-273 25-87 (109)
265 4b4t_R RPN7, 26S proteasome re 77.6 15 0.0005 38.6 11.7 60 585-644 134-195 (429)
266 1v54_E Cytochrome C oxidase po 75.3 23 0.00078 27.8 8.7 43 602-644 30-72 (109)
267 3txn_A 26S proteasome regulato 74.6 80 0.0027 32.3 26.5 296 477-788 19-345 (394)
268 3lpz_A GET4 (YOR164C homolog); 74.5 71 0.0024 31.7 25.1 165 481-679 39-214 (336)
269 2wvi_A Mitotic checkpoint seri 74.0 13 0.00045 32.5 8.2 66 739-804 77-143 (164)
270 2y69_E Cytochrome C oxidase su 69.5 24 0.00083 29.3 8.1 62 211-273 69-130 (152)
271 3esl_A Checkpoint serine/threo 68.7 43 0.0015 30.3 10.5 56 595-650 92-148 (202)
272 2y69_E Cytochrome C oxidase su 66.7 38 0.0013 28.2 8.7 45 601-645 72-116 (152)
273 4a1g_A Mitotic checkpoint seri 65.2 26 0.00088 30.1 8.0 63 739-801 82-145 (152)
274 4a1g_A Mitotic checkpoint seri 57.8 68 0.0023 27.5 9.3 50 636-685 84-134 (152)
275 3eiq_C Programmed cell death p 57.7 1.6E+02 0.0055 29.6 14.2 63 303-368 220-284 (358)
276 3kae_A CDC27, possible protein 57.7 97 0.0033 27.0 13.4 42 743-786 194-237 (242)
277 2p58_C Putative type III secre 57.1 51 0.0017 25.8 7.3 78 139-225 22-99 (116)
278 2qx5_A Nucleoporin NIC96; mRNA 56.2 2.4E+02 0.0082 31.1 20.0 26 758-783 534-564 (661)
279 2w2u_A Hypothetical P60 katani 56.1 63 0.0021 24.4 8.0 32 738-785 16-47 (83)
280 4aez_C MAD3, mitotic spindle c 53.3 31 0.001 31.8 6.8 55 739-793 131-186 (223)
281 1ya0_A SMG-7 transcript varian 53.0 50 0.0017 35.1 9.6 119 689-820 154-278 (497)
282 2wvi_A Mitotic checkpoint seri 52.9 91 0.0031 27.2 9.5 50 636-685 79-129 (164)
283 2v6y_A AAA family ATPase, P60 52.8 71 0.0024 24.0 8.0 31 739-785 9-39 (83)
284 2uwj_G Type III export protein 51.7 49 0.0017 25.8 6.5 78 139-225 21-98 (115)
285 3ltm_A Alpha-REP4; protein eng 51.7 1.4E+02 0.0047 27.0 18.7 17 581-597 125-141 (211)
286 4b4t_S RPN3, 26S proteasome re 51.4 1.4E+02 0.0048 31.7 12.4 67 617-683 231-301 (523)
287 2uwj_G Type III export protein 51.2 86 0.0029 24.5 10.3 51 309-367 48-98 (115)
288 2p58_C Putative type III secre 50.4 89 0.0031 24.5 10.9 49 310-366 50-98 (116)
289 1bpo_A Protein (clathrin); cla 47.1 2.1E+02 0.0073 29.7 12.4 120 619-748 363-482 (494)
290 1wfd_A Hypothetical protein 15 44.8 1E+02 0.0035 23.8 7.8 33 737-785 11-43 (93)
291 2zu6_B Programmed cell death p 43.8 1.3E+02 0.0043 29.6 10.1 64 303-369 169-234 (307)
292 3eiq_C Programmed cell death p 39.4 1.2E+02 0.0041 30.5 9.3 90 726-819 221-319 (358)
293 2d2s_A Exocyst complex compone 37.9 1.6E+02 0.0054 27.5 9.4 42 283-327 77-118 (235)
294 4gq4_A Menin; tumor suppressor 37.0 3.2E+02 0.011 27.7 11.4 125 666-804 259-392 (489)
295 1ya0_A SMG-7 transcript varian 36.9 1.5E+02 0.0051 31.5 10.1 79 654-734 154-232 (497)
296 2d2s_A Exocyst complex compone 36.7 1.7E+02 0.006 27.2 9.5 89 166-257 24-118 (235)
297 1wdy_A 2-5A-dependent ribonucl 36.6 50 0.0017 31.6 6.2 17 167-183 9-25 (285)
298 4b4t_S RPN3, 26S proteasome re 36.2 85 0.0029 33.3 7.9 62 689-750 233-298 (523)
299 3kae_A CDC27, possible protein 34.9 2.3E+02 0.0079 24.7 12.4 26 759-784 116-141 (242)
300 3u84_A Menin; MLL, JUND, ledgf 34.8 3.7E+02 0.013 27.3 11.4 26 758-783 319-344 (550)
301 1k1a_A B-cell lymphoma 3-encod 33.9 87 0.003 28.9 7.3 27 237-263 13-39 (241)
302 4aez_C MAD3, mitotic spindle c 33.5 2E+02 0.007 26.4 9.0 54 177-230 131-185 (223)
303 1wdy_A 2-5A-dependent ribonucl 32.7 1E+02 0.0034 29.3 7.7 21 420-440 192-212 (285)
304 4gq2_M Nucleoporin NUP120; bet 32.2 2.4E+02 0.0082 33.0 11.8 135 126-279 812-950 (950)
305 2zu6_B Programmed cell death p 30.5 2.3E+02 0.0077 27.7 9.5 90 726-819 170-268 (307)
306 2cpt_A SKD1 protein, vacuolar 30.3 1.9E+02 0.0066 23.4 7.5 32 738-785 15-46 (117)
307 3mv2_A Coatomer subunit alpha; 28.0 4.4E+02 0.015 25.8 10.8 50 598-647 186-237 (325)
308 4gq2_M Nucleoporin NUP120; bet 27.6 3E+02 0.01 32.2 11.6 28 723-750 898-925 (950)
309 2v6x_A Vacuolar protein sortin 27.3 2E+02 0.0067 21.6 7.9 19 767-785 23-41 (85)
310 2ion_A PDCD4, programmed cell 27.1 2.2E+02 0.0076 24.3 7.8 65 163-228 12-78 (152)
311 4a5x_A MITD1, MIT domain-conta 25.7 2.2E+02 0.0074 21.5 7.6 19 767-785 26-44 (86)
312 2nsz_A Programmed cell death p 25.6 2.3E+02 0.0079 23.4 7.5 62 304-368 11-74 (129)
313 2nsz_A Programmed cell death p 25.6 2.8E+02 0.0096 22.8 9.1 66 163-229 10-77 (129)
314 2fe3_A Peroxide operon regulat 24.5 3E+02 0.01 23.1 8.3 60 642-702 12-71 (145)
315 3u84_A Menin; MLL, JUND, ledgf 23.2 6E+02 0.021 25.8 11.9 97 658-766 263-367 (550)
316 2f6m_A Suppressor protein STP2 23.0 1.3E+02 0.0045 21.3 4.4 46 162-208 4-49 (65)
317 3eu9_A Huntingtin-interacting 22.6 72 0.0025 29.4 4.4 6 384-389 186-191 (240)
318 3re2_A Predicted protein; meni 22.3 3.6E+02 0.012 26.8 8.7 26 758-783 297-322 (472)
319 2ijq_A Hypothetical protein; s 22.2 3.7E+02 0.013 23.2 8.2 50 596-645 46-103 (161)
320 1mzb_A Ferric uptake regulatio 21.8 3.2E+02 0.011 22.6 7.8 59 643-702 9-68 (136)
321 3ctd_A Putative ATPase, AAA fa 21.8 4.5E+02 0.015 23.8 11.2 79 726-804 36-122 (213)
322 1oyz_A Hypothetical protein YI 21.6 5E+02 0.017 24.3 24.2 82 405-493 140-222 (280)
323 1bpo_A Protein (clathrin); cla 21.1 5.9E+02 0.02 26.5 10.6 109 138-252 343-451 (494)
324 3jxi_A Vanilloid receptor-rela 21.0 55 0.0019 30.9 3.2 24 206-229 13-36 (260)
325 3vu7_H DNA repair protein REV1 20.9 2.3E+02 0.0078 23.2 6.2 22 131-152 67-88 (124)
326 3kea_A K1L; tropism, ANK repea 20.7 1.7E+02 0.0059 28.0 6.8 13 311-323 103-115 (285)
327 4g8k_A 2-5A-dependent ribonucl 20.4 3.5E+02 0.012 26.4 9.3 16 169-184 31-46 (337)
328 2ion_A PDCD4, programmed cell 20.1 2E+02 0.0068 24.6 6.1 62 304-368 13-76 (152)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-41 Score=385.76 Aligned_cols=526 Identities=11% Similarity=0.002 Sum_probs=253.5
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH
Q 003122 134 ITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRW 213 (846)
Q Consensus 134 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 213 (846)
..+.|....+...|..+. .++...|+.++..|.+.|++++|..+|++|.. ..|+..++..++.+|.+.|++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS-----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccccCccCCCCCccccch-----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHH
Confidence 334455555555554332 23556677777777777777777777777764 34666777777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 003122 214 AMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKG 293 (846)
Q Consensus 214 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 293 (846)
|+.+|+.+... +++..+++.++.+|.+.|++++|+++|+++. |+.. ...++.+.+ -..
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~~~~-----------~~~ 193 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETN-----PFRK----DEKNANKLL-----------MQD 193 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC-----TTC-------------------------CCC
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccC-----Cccc----ccccccccc-----------ccc
Confidence 77777766542 4567777777777777777777777776421 1110 000010000 012
Q ss_pred CCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003122 294 TNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIV 373 (846)
Q Consensus 294 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 373 (846)
.+...+..+|+.++.+|.+.|++++|+++|+++.+..+. +...+..++..+...+..+.+...
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~-------------- 256 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK---CYEAFDQLVSNHLLTADEEWDLVL-------------- 256 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCSCHHHHHHHHH--------------
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch---hhHHHHHHHHhhcccchhHHHHHH--------------
Confidence 234445667777777777777777777777777665443 445555555443332221111110
Q ss_pred HHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 003122 374 SYNALMAAYASHGMSKEALSV-FNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAY 452 (846)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 452 (846)
.+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++.+|
T Consensus 257 -------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 257 -------------------KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp -------------------HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred -------------------hcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 00 122222222223333444455555555555555555555433 34555555556666
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHH
Q 003122 453 GSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAI 532 (846)
Q Consensus 453 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 532 (846)
.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|+.++|..++..+.... +.+..+|+.++..|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 66666666666666555432 1122222222222222222222222222222111 223444444444455555555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003122 533 ALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSG 612 (846)
Q Consensus 533 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (846)
++|+++.+.. +.+..+|..++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5555444421 2234444444444444444444444444444432 2344444444444444444444444444444431
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 003122 613 CSPDVITYTAMLHAYNTAEDWEKACALFLEMETN----NIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDS 688 (846)
Q Consensus 613 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 688 (846)
+.+..+|+.++.+|.+.|++++|+++|+++.+. +..|+. ...
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~---------------------------------~~~ 517 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP---------------------------------WAA 517 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG---------------------------------GHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh---------------------------------HHH
Confidence 223444444444444444444444444444432 223330 033
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHH
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNL 767 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 767 (846)
++..++.+|...|++++|++.++++....|. +..+|..++.+|.+.|++++|.+.|+++++ +.| +...|..++.+|
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 4444444444444444444444444444443 445566666666666666777777777666 666 344566555554
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-40 Score=378.41 Aligned_cols=521 Identities=10% Similarity=-0.011 Sum_probs=350.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHH
Q 003122 205 HGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKA 284 (846)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 284 (846)
+.+.|.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 344555555555555432 346677777777777777777777777777643 35667777777777777777777
Q ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 285 LSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTML 364 (846)
Q Consensus 285 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 364 (846)
..+|+.+... +++..+++.++.+|.+.|++++|+++|+++.. . +.. ...+.+.+. .
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~---~~~-----~~~~~~~~~-----------~ 192 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNP---F---RKD-----EKNANKLLM-----------Q 192 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT---T---C---------------C-----------C
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCC---c---ccc-----ccccccccc-----------c
Confidence 7777776532 45667777777777777777777777764321 1 000 000000000 1
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHH--H-HHHHHHCCCCcC
Q 003122 365 AEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKARE--V-FNMMRINNLKPN 441 (846)
Q Consensus 365 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~--~-~~~m~~~~~~~~ 441 (846)
..+.+.+..+|+.++.+|.+.|++++|.++|++|.+.+. .+...+..+...+...+..+.+.. + +..+...+....
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 123344556666666666666666666666666665421 133344444443333222211111 0 222222222222
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Q 003122 442 LVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGS 521 (846)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 521 (846)
..+|+.++..| .+.|++++|..+|+.+... +++..+|+.++.+
T Consensus 272 ~~~~~~~~~~~-----------------------------------~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 272 RSLYMLKLNKT-----------------------------------SHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHTTSCTT-----------------------------------TTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----------------------------------cCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 33334444444 4444444555444444433 3577778888888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 522 YMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEA 601 (846)
Q Consensus 522 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 601 (846)
|.+.|++++|+.+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 888888888888888887654 3366678888888888888888888888888653 56778888888888899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003122 602 ESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ 681 (846)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (846)
.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|+++|+++.+.
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998888753 3457888899999999999999999999988752 346778888999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccC------CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 682 DITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPS------FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 682 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
.+. +..++..++.+|.+.|++++|+++++++... .|.....+|..++.+|.+.|++++|.+.|+++++ ..|
T Consensus 471 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p 547 (597)
T 2xpi_A 471 FQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LST 547 (597)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSS
T ss_pred CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCC
Confidence 655 7788889999999999999999999888655 3432277999999999999999999999999999 778
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHH
Q 003122 756 -NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFA 802 (846)
Q Consensus 756 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 802 (846)
+..+|..++.+|.+.|++++|.+.++++.+ +.|+ +..+..+...+
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 677999999999999999999999999998 4565 44555555443
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.2e-27 Score=258.42 Aligned_cols=377 Identities=13% Similarity=0.048 Sum_probs=185.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHH
Q 003122 382 YASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEA 461 (846)
Q Consensus 382 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 461 (846)
+.+.|++++|...++++.+.. +.+...+..+...+...|++++|...++...... +.+..+|..++..+...|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 344455555555554444321 1123334444444455555555555554444332 33444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 003122 462 VEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKR 541 (846)
Q Consensus 462 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 541 (846)
++.|+++.+.. +.+..++..+..++.+.|++++|...+..+...+ +.+...+..+...+...|++++|...|+++.+.
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55555554431 1122233333333333333333333333333321 113334444555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003122 542 KVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYT 621 (846)
Q Consensus 542 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 621 (846)
. +.+..+|..+...+...|++++|...++++++.+ |.+...+..++..+...|++++|...|+++.... +.+..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 2 2234455555555555555555555555555543 3344555555555555555555555555555432 12345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 622 AMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL 700 (846)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 700 (846)
.++.+|...|++++|+..|+++++. .| +..+|..++.++.+.|++++|+..|+++++..+. +...+..++.++...
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHc
Confidence 5555555555555555555555552 23 2445555555555555555555555555554332 444555555555555
Q ss_pred CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcC
Q 003122 701 RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAG 771 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 771 (846)
|++++|+..++++....|. +..++..++.+|.+.|++++|.+.|+++++ +.|+ ..+|..++..|.+.|
T Consensus 319 g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 5555555555555544444 344555555555555555555555555555 5552 335555555544443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=9.4e-28 Score=259.12 Aligned_cols=380 Identities=13% Similarity=0.042 Sum_probs=332.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 413 LLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGR 492 (846)
Q Consensus 413 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 492 (846)
+...+.+.|++++|...+..+.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4567788999999999999988764 5566778888889999999999999999998864 5678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003122 493 KVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDE 572 (846)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 572 (846)
+++|...|+.+.... +.+..+|..++.++.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998764 4467789999999999999999999999998864 33455677888889999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C
Q 003122 573 MMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-D 651 (846)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~ 651 (846)
+++.. |.+..+|..++.++...|++++|...|+++++.+ +.+...|..++..+...|++++|+..|+++.+ +.| +
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~ 236 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNH 236 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCC
Confidence 99864 5678899999999999999999999999999864 33488999999999999999999999999998 455 4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
..++..++.+|.+.|++++|+..|+++++.++. +...+..++.++...|++++|+..++++....|. +..+|..++.+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHH
Confidence 788999999999999999999999999997765 6788999999999999999999999999888887 77899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcC
Q 003122 732 LGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFAQTRG 806 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~ 806 (846)
+...|++++|.+.++++++ ..|+ ..+|..++.+|.+.|++++|+..++++.+ +.|+ ...+..++..+...+
T Consensus 315 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 9999999999999999999 8885 66999999999999999999999999987 5564 446666666554433
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.7e-27 Score=260.61 Aligned_cols=186 Identities=17% Similarity=0.229 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHcCCCCCHHH
Q 003122 162 IYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQ---------WRWAMNIFDDMLRAAVAPSRST 232 (846)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~g~~~~~~~ 232 (846)
+++.+|+.|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. ++.|.++|++|.+.|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4556666666666666666666666666666666666666666655443 3455555555555555555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 003122 233 YNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVK 312 (846)
Q Consensus 233 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 312 (846)
|++||.+|++.|++++|.++|++|.+.|+.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 003122 313 LGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSV 349 (846)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 349 (846)
.|+.++|.++|++|.+.+.. |+..||+.++..++.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~--ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQ--VSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSS--BCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHHhc
Confidence 55555555555555544333 555555555554443
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.5e-27 Score=259.34 Aligned_cols=204 Identities=14% Similarity=0.207 Sum_probs=110.7
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCC---------HHH
Q 003122 214 AMNIFDDMLRAAVAPSR-STYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQ---------YSK 283 (846)
Q Consensus 214 A~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---------~~~ 283 (846)
+..+.+.+.+.+....+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+||.||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444445544444332 34566666666666666666666666666666666666666666655443 455
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 284 ALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTM 363 (846)
Q Consensus 284 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 363 (846)
|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.+.. ||..+|+.+|.+|++.|++++|.++|++|
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~--Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ--PRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 5556666665555555555555555555555555555555555544332 55555555555555555555555555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 003122 364 LAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGR 419 (846)
Q Consensus 364 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 419 (846)
.+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.|+..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555555543
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.5e-25 Score=248.85 Aligned_cols=455 Identities=11% Similarity=0.001 Sum_probs=304.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003122 300 TTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALM 379 (846)
Q Consensus 300 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 379 (846)
...+......+.+.|++++|+..|+++.... |+..+|..++.++.+.|++++|...++++++.+ +.+..+|..+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 80 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK----EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 4456666777777777777777777777654 466677777777777777777777777777653 33455677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHH
Q 003122 380 AAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLA 459 (846)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 459 (846)
.+|...|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..|+...+.....
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------- 150 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE--------- 150 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH---------
Confidence 777777777777777777766542 2334444444444433333333333333332222222211111000
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 003122 460 EAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMN---VGEYEKAIALYK 536 (846)
Q Consensus 460 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~ 536 (846)
. .......|+.......+..+....... ....+.+...+......+.. .|++++|+..|+
T Consensus 151 ----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 213 (514)
T 2gw1_A 151 ----R---KDKQENLPSVTSMASFFGIFKPELTFA----------NYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCCCCS----------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred ----H---HhhccCCchhHHHHHHHhhcCHHHHHH----------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 0 000011233222221111111000000 00002234455555555554 788999999998
Q ss_pred HHhh-----CCCCC--------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 537 CMKK-----RKVMP--------DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAES 603 (846)
Q Consensus 537 ~~~~-----~~~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 603 (846)
++.+ ....| +..++..+...+...|++++|...++++++.. |+..++..++.++...|++++|..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 291 (514)
T 2gw1_A 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYN 291 (514)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGG
T ss_pred HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHH
Confidence 8877 31112 24567778888889999999999999998864 338888889999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003122 604 MFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDI 683 (846)
Q Consensus 604 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (846)
.++++.... +.+...+..++..|...|++++|+..|+++.+.. +.+..++..++..|...|++++|+..++++++..+
T Consensus 292 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 369 (514)
T 2gw1_A 292 YFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369 (514)
T ss_dssp HHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 999988753 3457788899999999999999999999998842 33467888888899999999999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccc-----hhhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCc
Q 003122 684 TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS-----IGLLNQLLHLLGK---SGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 684 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p 755 (846)
. +...+..++.++...|++++|+..++++....|... ..+|..++.++.. .|++++|...++++++ ..|
T Consensus 370 ~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~ 446 (514)
T 2gw1_A 370 E-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDP 446 (514)
T ss_dssp T-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCT
T ss_pred c-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCc
Confidence 4 667888899999999999999999998866555421 3378899999999 9999999999999999 778
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 003122 756 -NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMF 795 (846)
Q Consensus 756 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 795 (846)
+..++..++.+|.+.|++++|...++++.+ +.|+....
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~ 485 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTMEEK 485 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHH
Confidence 466888999999999999999999999988 45665543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-24 Score=244.68 Aligned_cols=450 Identities=10% Similarity=0.046 Sum_probs=294.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 003122 268 HNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLY 347 (846)
Q Consensus 268 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~ 347 (846)
+..+...+.+.|++++|+..|+++...+ |+..++..++.++.+.|++++|+..++++.+..+. +..++..++.++
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~ 83 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD---YSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH---HHHHHHHHHHHH
Confidence 3444455555555555555555555543 45555666666666666666666666666555443 455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 003122 348 SVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAR 427 (846)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 427 (846)
.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+......-..............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 66666666666666665553 22222233333333332222233333322222211111111111000000011111111
Q ss_pred HHHHHHHHCC---------CCcCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhc
Q 003122 428 EVFNMMRINN---------LKPNLVSYSALIDAYGS---NGLLAEAVEVFREMEQ-----DGIEPNIVSICTLLAACGRC 490 (846)
Q Consensus 428 ~~~~~m~~~~---------~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~g~~~~~~~~~~ll~~~~~~ 490 (846)
.+...+.... -+.+...+......+.. .|++++|+.+|+++.+ ....|+....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---------- 232 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL---------- 232 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH----------
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc----------
Confidence 1111111000 01224444444444444 7788888888887776 3112221100
Q ss_pred CCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 003122 491 GRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFL 570 (846)
Q Consensus 491 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 570 (846)
.+.+..++..++..+...|++++|+..|+++.+.. |+...+..++..+...|++++|...+
T Consensus 233 -----------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 233 -----------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred -----------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 02245677888889999999999999999998874 44778888999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003122 571 DEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP 650 (846)
Q Consensus 571 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 650 (846)
+++++.. +.+..++..++.+|...|++++|...|+++.... +.+...+..++..|...|++++|+..++++.+. .+.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-ccc
Confidence 9999864 5677889999999999999999999999999863 335788999999999999999999999999884 233
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHh---cCCHHHHHHHHHhhccCCCccch
Q 003122 651 DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFS-----DSIFFEMVLACSL---LRDWKTTIDLIKQMEPSFHVVSI 722 (846)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 722 (846)
+..++..++.+|...|++++|+..++++++..+... ...+..++.++.. .|++++|+..++++....|. +.
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 449 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SE 449 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cH
Confidence 567888999999999999999999999987544311 3388899999999 99999999999999888777 67
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
.++..++.+|...|++++|...|+++++ +.|+..
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESAD--LARTME 483 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hccccH
Confidence 8899999999999999999999999999 889655
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4.3e-23 Score=227.46 Aligned_cols=382 Identities=12% Similarity=0.022 Sum_probs=216.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 003122 371 NIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALID 450 (846)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 450 (846)
+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..+|...|++++|...|+++.+.+ +.+...+..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34456666666666666666666666666532 2345666666666777777777777776666553 345666777777
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC
Q 003122 451 AYGSNGLLAEAVEVFREMEQDGIEPNI----VSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVG 526 (846)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 526 (846)
.|...|++++|.+.|+++.+. .|+. ..+..+...+. ...+..+...+...|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE-----------------------MQRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcC
Confidence 777777777777777777764 2332 23333322211 111233344556666
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 527 EYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFN 606 (846)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (846)
++++|+..|+++.+.. +.+...+..++.+|...|++++|...++++.+.. +.+..++..++.+|...|++++|+..|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6777776666666542 3345556666666666666666666666665542 3455556666666666666666666666
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003122 607 MMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITF 685 (846)
Q Consensus 607 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 685 (846)
++... .|+ ...+..+... .. ...+..++.+|.+.|++++|+..|+++++..+.
T Consensus 236 ~~~~~--~p~~~~~~~~~~~~--------------~~---------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~- 289 (450)
T 2y4t_A 236 ECLKL--DQDHKRCFAHYKQV--------------KK---------LNKLIESAEELIRDGRYTDATSKYESVMKTEPS- 289 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHH--------------HH---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-
T ss_pred HHHHh--CCChHHHHHHHHHH--------------HH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-
Confidence 66553 222 3333222000 00 001122355566666666666666666654332
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHH
Q 003122 686 S----DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTY 760 (846)
Q Consensus 686 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~ 760 (846)
+ ...+..++.++...|++++|+..++++....|. +..+|..++.+|...|++++|...|+++++ +.|+ ..++
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~ 366 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIR 366 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHH
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHH
Confidence 2 235556666666666666666666666555554 456666777777777777777777777776 6663 4455
Q ss_pred HHHH------------HHHHhcC-----CHHHHHHHHHH-HHHCCCCCC----HH-------hHHHHHHHHHhcCCcchH
Q 003122 761 SILL------------KNLLAAG-----NWRKYIEVLQW-MEDAGIQPS----YG-------MFRDIVSFAQTRGGAEYA 811 (846)
Q Consensus 761 ~~l~------------~~~~~~g-----~~~~A~~~~~~-~~~~g~~p~----~~-------~~~~l~~~~~~~~~~~~a 811 (846)
..++ ..|...| ..+++.+.|++ ..+ ..|| +. .+..+...+...++.+..
T Consensus 367 ~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 367 EGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5555 2344455 45566666665 333 2232 11 456666777666665554
Q ss_pred H
Q 003122 812 A 812 (846)
Q Consensus 812 ~ 812 (846)
.
T Consensus 445 ~ 445 (450)
T 2y4t_A 445 K 445 (450)
T ss_dssp -
T ss_pred H
Confidence 3
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=7.8e-24 Score=239.28 Aligned_cols=440 Identities=13% Similarity=0.048 Sum_probs=288.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 301 TTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMA 380 (846)
Q Consensus 301 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 380 (846)
..+..+...+.+.|++++|+..|+++....+. +..++..+..+|.+.|++++|+..|+++++.+ +.+..++..+..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 44556666667777777777777777666554 56667777777777777777777777776653 334556666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHh
Q 003122 381 AYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRIN------NLKPNLVSYSALIDAYGS 454 (846)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~li~~~~~ 454 (846)
++...|++++|...|+.+.. .|+. ....+..+...+...+|...++.+... ...|+. ..+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 77777777777777753221 1221 112233344444455666666665432 112222 22333444
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 455 NGLLAEAVEVFREMEQDGIEPNIVSICT-LLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIA 533 (846)
Q Consensus 455 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 533 (846)
..+.+.+...+...... .+....+.. +...+.. . ........|++++|+.
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~---------------------~------~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSA---------------------T------DEGYLVANDLLTKSTD 223 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTC---------------------S------HHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHh---------------------h------hhhhHHHHHHHHHHHH
Confidence 55555544443332221 111111111 1111100 0 0011122356788888
Q ss_pred HHHHHhhCCCCCC--------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 534 LYKCMKKRKVMPD--------SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMF 605 (846)
Q Consensus 534 ~~~~~~~~~~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 605 (846)
+|+++.+.. |+ ..++..+...+...|++++|...++++++.. |+..++..++..+...|++++|...|
T Consensus 224 ~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 224 MYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 888887763 33 2246666677788888999999999888753 45778888888888899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003122 606 NMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITF 685 (846)
Q Consensus 606 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 685 (846)
+++.... +.+..+|..++..+...|++++|+..|+++.+.. +.+..++..++.+|...|++++|+..++++++..+.
T Consensus 300 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~- 376 (537)
T 3fp2_A 300 QKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT- 376 (537)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 9888753 3457888888889999999999999999988742 224667888888899999999999999999887655
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc-----chhhHHHHHHHHHhc----------CCHHHHHHHHHHHHh
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV-----SIGLLNQLLHLLGKS----------GRIESMMKLFFKIVS 750 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 750 (846)
+...+..++.++...|++++|+..++++....|.. ....+..++.++... |++++|...|+++++
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 66788888899999999999999988875443321 223355667788888 999999999999999
Q ss_pred cCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 751 SGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 751 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
..| +..+|..++.+|.+.|++++|+..++++.+ +.|+..
T Consensus 457 --~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~ 496 (537)
T 3fp2_A 457 --LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMD 496 (537)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--CH
T ss_pred --hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcH
Confidence 788 466899999999999999999999999988 445444
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=6.3e-23 Score=226.18 Aligned_cols=325 Identities=12% Similarity=0.023 Sum_probs=203.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 003122 441 NLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIG 520 (846)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 520 (846)
+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+.++|...+..+...+ +.+..++..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34445555555555555555555555555431 2234444444444444444444444444444332 224556666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 521 SYMNVGEYEKAIALYKCMKKRKVMPDS----VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG 596 (846)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 596 (846)
.|.+.|++++|+..|+++.+. .|+. ..+..++..+.. ..+..++..+...|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 666777777777777766654 2332 333333332110 01122233455566
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAE 676 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 676 (846)
++++|+..|+++.... +.+...+..++.+|...|++++|+..|+++.+. .+.+..++..++.+|...|++++|+..|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666665542 234555666666666666666666666666552 12335566666666666666666666666
Q ss_pred HHHHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhcCCHHHH
Q 003122 677 FMREQDITFSDSIFF------------EMVLACSLLRDWKTTIDLIKQMEPSFHVVS---IGLLNQLLHLLGKSGRIESM 741 (846)
Q Consensus 677 ~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 741 (846)
++++..+. +...+. .++.++...|++++|+..++++....|... ..+|..++.++.+.|++++|
T Consensus 236 ~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 236 ECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 66654433 333333 338899999999999999999987777622 34788999999999999999
Q ss_pred HHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHH
Q 003122 742 MKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIV 799 (846)
Q Consensus 742 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 799 (846)
+..++++++ ..| +..+|..++.+|...|++++|+..++++.+ +.|+ +..+..+.
T Consensus 315 ~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 315 IRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 999999999 788 567999999999999999999999999987 5665 44555554
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.1e-22 Score=229.86 Aligned_cols=445 Identities=12% Similarity=0.100 Sum_probs=313.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 003122 266 VTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIH 345 (846)
Q Consensus 266 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~ 345 (846)
..+..+...+.+.|++++|+..|+++.... +.+..++..++.++.+.|++++|++.|+++.+..+. +..++..+..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 101 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---HSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHHH
Confidence 445556666777777777777777776654 346677777888888888888888888888776655 6777788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCh
Q 003122 346 LYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNG--LCPDIVSYTSLLNAYGRSQQP 423 (846)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~ 423 (846)
++...|++++|...|+ .... .|+. ....+..+...+...+|...++++.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 8888888888888885 3322 2222 1222344555566677888888775531 001111123344445556666
Q ss_pred HHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHh--------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 424 VKAREVFNMMRINNLKPNLV-SYSALIDAYGS--------NGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKV 494 (846)
Q Consensus 424 ~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~--------~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 494 (846)
+.+...+...... .+... ....+...+.. .|++++|+.+++++.+.. +.+...+..+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~----------- 242 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENA----------- 242 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHH-----------
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHH-----------
Confidence 6655544333221 22221 22223322222 246778888888877642 2222222211
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 003122 495 NIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMM 574 (846)
Q Consensus 495 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 574 (846)
..++..+...+...|++++|+..|+++.+. .|+...+..+...+...|++++|...+++++
T Consensus 243 -----------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 243 -----------------ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 223556667788899999999999999886 4667788889999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003122 575 DLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIA 654 (846)
Q Consensus 575 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 654 (846)
+.. +.+..++..++..+...|++++|+..|+++.... +.+...|..++.+|...|++++|+..++++.+.. +.+..+
T Consensus 304 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 380 (537)
T 3fp2_A 304 DLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEV 380 (537)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred ccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 864 5678899999999999999999999999999863 3347889999999999999999999999999842 334678
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhc----------CCHHHHHHHHHhhccCCCc
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDIT-----FSDSIFFEMVLACSLL----------RDWKTTIDLIKQMEPSFHV 719 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~ 719 (846)
+..++.++...|++++|+..|+++++..+. .....+...+.++... |++++|+..++++....|.
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC
Confidence 889999999999999999999999874322 1223355667778888 9999999999999888887
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 720 VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 720 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
+..++..++.+|...|++++|.+.|+++++ +.|+..
T Consensus 461 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~ 496 (537)
T 3fp2_A 461 -SEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMD 496 (537)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--CH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcH
Confidence 678999999999999999999999999999 888544
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.92 E-value=2.5e-18 Score=197.73 Aligned_cols=340 Identities=13% Similarity=0.116 Sum_probs=210.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 413 LLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGR 492 (846)
Q Consensus 413 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 492 (846)
+...+...|.+++|..+|++.. -.....+.++. ..|++++|.++.++. .+..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 4455555666666666666542 11111222221 445566666665533 234556666666666666
Q ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 003122 493 KVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDE 572 (846)
Q Consensus 493 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 572 (846)
+++|...|... .+...|..++.++.+.|++++|++.|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 66666666443 255566666666666666666666666655542 22222334666666666665433222
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 573 MMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS 652 (846)
Q Consensus 573 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 652 (846)
+ .++...+..+++.|...|++++|..+|..+ ..|..++.+|.+.|++++|++.+++.. +.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence 1 234445555666666666666666666653 256666666666666666666666652 34
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
.+|..+..+|...|++..|...... +..++..+..++..|...|.+++|+.+++.....++. .++.|..|+.+|
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera-H~gmftELaiLy 1324 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh-HhHHHHHHHHHH
Confidence 5666666666666666666654443 2225667778888999999999999999998877755 788888888888
Q ss_pred Hhc--CCHHHHHHHHHHHHhcCCCc------CHHHHHHHHHHHHhcCCHHHHHHH-------------HHHHHHCCCCCC
Q 003122 733 GKS--GRIESMMKLFFKIVSSGAEA------NFNTYSILLKNLLAAGNWRKYIEV-------------LQWMEDAGIQPS 791 (846)
Q Consensus 733 ~~~--g~~~~A~~~~~~~~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~g~~p~ 791 (846)
.+. +++.++.++|..-+. +.| +...|..+.-.|.+.|+|++|+.. |+..+. -..+
T Consensus 1325 aKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n 1400 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVAN 1400 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--cccc
Confidence 776 488888888887766 555 344788888899999999999832 222211 1235
Q ss_pred HHhHHHHHHHHHhcC
Q 003122 792 YGMFRDIVSFAQTRG 806 (846)
Q Consensus 792 ~~~~~~l~~~~~~~~ 806 (846)
+..+...+.|+.+..
T Consensus 1401 ~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1401 VELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHHHhhC
Confidence 667777777777655
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=1.1e-17 Score=192.57 Aligned_cols=381 Identities=12% Similarity=0.114 Sum_probs=196.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003122 304 NIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYA 383 (846)
Q Consensus 304 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 383 (846)
...+.+|...|.+.+|+++++++......+..+...-+.++.+..+. +..+..++.++.-.. + ...+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 34455555666666666666666533222223344444455444444 334444444433211 1 222445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHH
Q 003122 384 SHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVE 463 (846)
Q Consensus 384 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 463 (846)
..|.+++|..+|++... .....+.++ ...+++++|.++.++.. +..+|..+..++...|++++|++
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 56666666666665421 111112221 14555666666655431 34556666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 003122 464 VFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKV 543 (846)
Q Consensus 464 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 543 (846)
.|.+. .|...|..++..|.+.|++++|.+.+....+.. ++....+.++.+|.+.+++++... | ++
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~-f---I~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE-F---IN--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH-H---Hh---
Confidence 66442 344555556666666666666666666555443 222222336666666666553222 2 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003122 544 MPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAM 623 (846)
Q Consensus 544 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 623 (846)
.++...|..+...|...|++++|..+|..+ ..|..++.+|++.|++++|.+.+++.. +..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHH
Confidence 234445555666666666666666666653 255666666666666666666666542 44566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL--LR 701 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g 701 (846)
..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++..+..+.. ....|..++.+|.+ .+
T Consensus 1257 ~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera-H~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh-HhHHHHHHHHHHHhCCHH
Confidence 666666666666665544322 23334445666666666666666666666554311 33344444444432 33
Q ss_pred CHHHHHHHHHhhccCCCc----cchhhHHHHHHHHHhcCCHHHHH
Q 003122 702 DWKTTIDLIKQMEPSFHV----VSIGLLNQLLHLLGKSGRIESMM 742 (846)
Q Consensus 702 ~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~ 742 (846)
+..+++++|..-....+. .....|..+...|.+.|+++.|.
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 445555555543332220 13445666666666666666665
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=9.1e-20 Score=193.91 Aligned_cols=314 Identities=12% Similarity=0.024 Sum_probs=163.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHH
Q 003122 444 SYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYM 523 (846)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 523 (846)
.+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.... +.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 33444444444444444444444444432 2223333333333444444444444443333321 224455556666666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 524 NVGEYEKAIALYKCMKKRKVMP----DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIA 599 (846)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 599 (846)
..|++++|+..|+++.+. .| +...+..+.... . ...+..++..+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence 666666666666666654 23 122222221100 0 001122334455555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003122 600 EAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMR 679 (846)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (846)
+|...++++.+.. +.+...+..++.++...|++++|+..++++.+. .+.+..++..++..+...|++++|...+++++
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555432 223455555555555555555555555555543 12234455555555555555555555555555
Q ss_pred HCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhcCCHHHHHHH
Q 003122 680 EQDITFSDSIFF------------EMVLACSLLRDWKTTIDLIKQMEPSFHVVS---IGLLNQLLHLLGKSGRIESMMKL 744 (846)
Q Consensus 680 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 744 (846)
+..+. +...+. .++.++...|++++|+..++++....|... ..++..++.++...|++++|...
T Consensus 216 ~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 216 KLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 54333 222221 235556666666777666666655554421 12345567777777777777777
Q ss_pred HHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 745 FFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 745 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
++++++ ..| +..+|..++.+|...|++++|+..++++.+ +.|+
T Consensus 295 ~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~ 338 (359)
T 3ieg_A 295 CSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNEN 338 (359)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTT
T ss_pred HHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 777777 666 455777777777777777777777777765 3454
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.8e-19 Score=191.57 Aligned_cols=303 Identities=12% Similarity=0.073 Sum_probs=252.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 511 NTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVIS 590 (846)
Q Consensus 511 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 590 (846)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+...+..++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566777788888888888888888887753 3457778888888888888888888888888764 556778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003122 591 AYSKQGLIAEAESMFNMMKMSGCSP----DVITYTAM------------LHAYNTAEDWEKACALFLEMETNNIEPDSIA 654 (846)
Q Consensus 591 ~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 654 (846)
++...|++++|...|+++.+. .| +...+..+ +..+...|++++|+..++++.+.. +.+..+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 156 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAEL 156 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHH
Confidence 888888899998888888875 35 34455444 578899999999999999999842 345788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHH--------
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLN-------- 726 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------- 726 (846)
+..++.++...|++++|+..++++++..+. +...+..++.++...|++++|+..++++....|. +..++.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHH
Confidence 999999999999999999999999997765 7889999999999999999999999999887776 444433
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHH
Q 003122 727 ----QLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-----TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFR 796 (846)
Q Consensus 727 ----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~ 796 (846)
.++..+...|++++|...++++++ ..|+.. .+..++.+|...|++++|+..++++.+. .| ++..+.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 347789999999999999999999 778532 4666889999999999999999999884 45 567888
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhhc
Q 003122 797 DIVSFAQTRGGAEYAAIIQERIESLRMK 824 (846)
Q Consensus 797 ~l~~~~~~~~~~~~a~~~~~~l~~l~~~ 824 (846)
.++..+...|+.++|...++++.++.+.
T Consensus 311 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 311 DRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999998887654
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=2.8e-18 Score=190.69 Aligned_cols=350 Identities=13% Similarity=0.014 Sum_probs=211.5
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCH
Q 003122 371 NIVSYNALMAAYAS----HGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGR----SQQPVKAREVFNMMRINNLKPNL 442 (846)
Q Consensus 371 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~ 442 (846)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444445555544 455555555555555432 34445555555555 555555655555555543 44
Q ss_pred HHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccCHHH
Q 003122 443 VSYSALIDAYGS----NGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGR----CGRKVNIDAVLLAAEMRDIKLNTVA 514 (846)
Q Consensus 443 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 514 (846)
..+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|...|......+ +..+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 445555555555 455666666666555543 33344444444443 445555555555554443 4555
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 003122 515 YNSAIGSYMN----VGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCR----LSRYSEALGFLDEMMDLKIPLTNQVYS 586 (846)
Q Consensus 515 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 586 (846)
+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|..++++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5666666665 667777777777666653 45555566666654 566777777777766643 445556
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 587 SVISAYSK----QGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTA-----EDWEKACALFLEMETNNIEPDSIACSA 657 (846)
Q Consensus 587 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p~~~~~~~ 657 (846)
.+..+|.. .+++++|+..|++..+.| +...+..|...|... +++++|+..|++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 66666666 677777777777776543 455666666666665 67777777777777643 3455666
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCccchhhHHHHHH
Q 003122 658 LMRAFNKGG---QPSKVLLVAEFMREQDITFSDSIFFEMVLACSL----LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLH 730 (846)
Q Consensus 658 l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 730 (846)
+...|...| +.++|+.+|+++.+.+ +...+..++.+|.. .+++++|+.+++++.+.+ ++.++..|+.
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666655 6677777777777653 56666677777766 677777777777765543 3456667777
Q ss_pred HHHh----cCCHHHHHHHHHHHHh
Q 003122 731 LLGK----SGRIESMMKLFFKIVS 750 (846)
Q Consensus 731 ~~~~----~g~~~~A~~~~~~~~~ 750 (846)
+|.. .+++++|...|+++++
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHH
Confidence 7776 6777777777777777
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=5.9e-18 Score=187.99 Aligned_cols=369 Identities=12% Similarity=0.051 Sum_probs=216.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cC
Q 003122 350 NGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYAS----HGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGR----SQ 421 (846)
Q Consensus 350 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g 421 (846)
.+++++|...|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 344444444444444332 23333344444444 444444444444444332 33333344444444 34
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 003122 422 QPVKAREVFNMMRINNLKPNLVSYSALIDAYGS----NGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGR----CGRK 493 (846)
Q Consensus 422 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~ 493 (846)
++++|...|++..+.+ +...+..|...|.. .+++++|++.|++..+.| +...+..+...|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 4444444444444433 33344444444443 444555555555544432 33444444444444 4455
Q ss_pred HHHHHHHHHHHhCCCccCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhH
Q 003122 494 VNIDAVLLAAEMRDIKLNTVAYNSAIGSYMN----VGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCR----LSRYSE 565 (846)
Q Consensus 494 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 565 (846)
++|...+......+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 55555555544443 44555556666654 667777777777776653 45556666666666 677888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 003122 566 ALGFLDEMMDLKIPLTNQVYSSVISAYSKQ-----GLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAE---DWEKAC 637 (846)
Q Consensus 566 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~ 637 (846)
|+..|+++.+.+ +...+..+...|... +++++|+..|++..+.| +...+..|...|...| ++++|+
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 888888777653 455666777777776 78888888888887753 5667777777777655 678888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 003122 638 ALFLEMETNNIEPDSIACSALMRAFNK----GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL----LRDWKTTIDL 709 (846)
Q Consensus 638 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 709 (846)
++|++..+.| +...+..|...|.. .+++++|+.+|+++.+.+ +...+..++.+|.. .+++++|..+
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8888888753 56677777777777 778888888888888765 46677778888877 7888888888
Q ss_pred HHhhccCCCc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 710 IKQMEPSFHV--VSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 710 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
++++...++. .+..+...++.++.. +.+.|.+...+.++
T Consensus 426 ~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 426 FDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIE 466 (490)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHH
Confidence 8887766532 134445555554332 34555555555554
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.7e-19 Score=189.33 Aligned_cols=285 Identities=12% Similarity=0.053 Sum_probs=221.6
Q ss_pred ccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 509 KLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSV 588 (846)
Q Consensus 509 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 588 (846)
+.+...+..++..+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|..+++++++.. +.+..++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3455667777788888888888888888887753 3344556667777888888888888888888754 5567788888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 589 ISAYSKQG-LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQ 667 (846)
Q Consensus 589 ~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 667 (846)
+..+...| ++++|...|+++.... +.+...|..++..+...|++++|+..|+++.+.. +.+...+..++..|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 88888888 8888888888888753 3347778888888888889999998888888742 2235667778888888899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCC--------ccchhhHHHHHHHHHhcCCHH
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH--------VVSIGLLNQLLHLLGKSGRIE 739 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~ 739 (846)
+++|+..++++++..+. +...+..++.++...|++++|+..++++....+ .....++..++.+|...|+++
T Consensus 175 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999888887655 677888888888889999999888887754421 224568888999999999999
Q ss_pred HHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHH
Q 003122 740 SMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFA 802 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 802 (846)
+|...++++++ ..| +..+|..++.+|...|++++|+..++++.+ +.|+ +..+..++..+
T Consensus 254 ~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 254 EALDYHRQALV--LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHH
Confidence 99999999998 777 456888889999999999999999998876 4554 44566666655
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=2.4e-17 Score=185.10 Aligned_cols=218 Identities=11% Similarity=0.122 Sum_probs=156.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 564 SEALGFLDEMMDLKIPLTNQVYSSVISAYSK-------QGLIA-------EAESMFNMMKMSGCSPDVITYTAMLHAYNT 629 (846)
Q Consensus 564 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (846)
+.+..+|++++.. .|.+...|..++..+.+ .|+++ +|..+|++.++.-.+.+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 3667788888775 35677788888777765 68876 788888888752123347788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 003122 630 AEDWEKACALFLEMETNNIEPD-S-IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA-CSLLRDWKTT 706 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 706 (846)
.|++++|..+|+++++ +.|+ . ..|..++..+.+.|+.++|+.+|+++++..+. +...+...+.. +...|+.++|
T Consensus 334 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHH
Confidence 8888888888888887 4554 2 47888888888888888888888888875433 33344333333 3357888888
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 707 IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG-AEAN--FNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
..+++++....|. ++.+|..++..+.+.|+.++|+.+|++++..+ ..|+ ...|...+......|+.+.+..+++++
T Consensus 411 ~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887777665 66788888888888888888888888888731 1232 226767777777788888888888887
Q ss_pred HHC
Q 003122 784 EDA 786 (846)
Q Consensus 784 ~~~ 786 (846)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.8e-19 Score=186.69 Aligned_cols=285 Identities=9% Similarity=0.032 Sum_probs=211.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 003122 482 TLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLS 561 (846)
Q Consensus 482 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 561 (846)
.+...+...|++++|..+++.+.... +.+...+..++..+...|++++|+..++++.+.. +.+...+..+...+...|
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVG 104 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhh
Confidence 33333444444444444444443332 2244455556667777888888888888877753 335667777888888888
Q ss_pred -CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 562 -RYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALF 640 (846)
Q Consensus 562 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (846)
++++|...++++++.. +.+...+..++.++...|++++|...|+++.+.. +.+...+..++..|...|++++|...+
T Consensus 105 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 105 HKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp SCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888888764 5567778888888888888888888888888753 234667777888888888899999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003122 641 LEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDI--------TFSDSIFFEMVLACSLLRDWKTTIDLIKQ 712 (846)
Q Consensus 641 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 712 (846)
+++.+.. +.+..++..++..+...|++++|+..++++++... ......+..++.++...|++++|+..+++
T Consensus 183 ~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 183 SQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8888742 33467888888888889999999998888886421 22456888889999999999999999998
Q ss_pred hccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHH-HhcCCHH
Q 003122 713 MEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNL-LAAGNWR 774 (846)
Q Consensus 713 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~-~~~g~~~ 774 (846)
+....|. +..+|..++.+|...|++++|.+.++++++ +.| +...+..++.+| ...|+.+
T Consensus 262 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 262 ALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 8877776 677889999999999999999999999998 888 556888888887 4556543
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=2.2e-17 Score=185.46 Aligned_cols=221 Identities=7% Similarity=-0.007 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 599 AEAESMFNMMKMSGCSPDVITYTAMLHAYNT-------AEDWE-------KACALFLEMETNNIEPDSIACSALMRAFNK 664 (846)
Q Consensus 599 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 664 (846)
++|..+|++++... +.+...|..++..+.+ .|+++ +|..+|++.++.-.+.+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 47888999998852 3468899999988875 78877 999999999863123357899999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH-HHhcCCHHHHH
Q 003122 665 GGQPSKVLLVAEFMREQDITFSD-SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL-LGKSGRIESMM 742 (846)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~ 742 (846)
.|++++|..+|+++++..+. +. ..|...+..+.+.|++++|+++++++....|. ....|...+.. +...|+.++|.
T Consensus 334 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHH
Confidence 99999999999999996543 33 58888999999999999999999999877665 44555444444 34689999999
Q ss_pred HHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HHhHHHHHHHHHhcCCcchHHHHHHHH
Q 003122 743 KLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGI-QPS--YGMFRDIVSFAQTRGGAEYAAIIQERI 818 (846)
Q Consensus 743 ~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~l 818 (846)
.+|+++++ ..|+ ...|..++..+.+.|+.++|..+|+++...+. .|+ ...+...+.+....|+.+.+..+.+++
T Consensus 412 ~~~e~al~--~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 412 KIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHH--HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHH--HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999 8894 66999999999999999999999999998632 222 226777788888899999999999998
Q ss_pred HHHhhc
Q 003122 819 ESLRMK 824 (846)
Q Consensus 819 ~~l~~~ 824 (846)
.+..++
T Consensus 490 ~~~~p~ 495 (530)
T 2ooe_A 490 FTAFRE 495 (530)
T ss_dssp HHHTHH
T ss_pred HHHCch
Confidence 887664
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=3.2e-19 Score=190.60 Aligned_cols=257 Identities=13% Similarity=0.057 Sum_probs=118.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003122 514 AYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYS 593 (846)
Q Consensus 514 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 593 (846)
.+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++..++.+|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555555555555555555555442 2244445555555555555555555555555432 334445555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHH
Q 003122 594 KQGLIAEAESMFNMMKMSGCSPD-VITYT----------------AMLHAYNTAEDWEKACALFLEMETNNIEP---DSI 653 (846)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~----------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~ 653 (846)
..|++++|...|+++.... |+ ...+. .+...+ ..|++++|+..|+++.+. .| +..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--~p~~~~~~ 218 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--DPTSIDPD 218 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH--STTSCCHH
T ss_pred HcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--CcCcccHH
Confidence 5555555555555555432 21 11111 111122 444445555555544442 22 234
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
++..++.+|...|++++|+..++++++..+. +...+..++.++...|++++|+..++++....|. +..++..++.+|.
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~ 296 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 4444444444445555555555544443322 3344444444444444444444444444444333 3344444444444
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEAN------------FNTYSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
..|++++|...|+++++ +.|+ ..+|..++.+|...|++++|..+++
T Consensus 297 ~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 297 NLGAHREAVEHFLEALN--MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHTCHHHHHHHHHHHHH--HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HCCCHHHHHHHHHHHHH--hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 44444444444444444 3332 2344444444444444444444443
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=2.8e-19 Score=191.02 Aligned_cols=291 Identities=10% Similarity=0.035 Sum_probs=236.7
Q ss_pred HHhcCCHHHHHH-HHHHHhhCCC-CC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 522 YMNVGEYEKAIA-LYKCMKKRKV-MP--DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGL 597 (846)
Q Consensus 522 ~~~~g~~~~A~~-~~~~~~~~~~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 597 (846)
+...|++++|+. .|++...... .| +...+..+...+...|++++|...++++++.. +.+..++..++.++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688999998 8887665421 11 34567788999999999999999999999975 6788899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHH---------------HHHH
Q 003122 598 IAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSI-ACSA---------------LMRA 661 (846)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~---------------l~~~ 661 (846)
+++|...|+++.+.. +.+..++..++.+|...|++++|+..++++.+. .|+.. .+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999999864 446899999999999999999999999999984 34322 2211 1333
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 662 FNKGGQPSKVLLVAEFMREQDITF-SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
+...|++++|+..++++++..+.. +...+..++.++...|++++|+..++++....|. +..+|..++.++...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHH
Confidence 448999999999999999876543 5788999999999999999999999999888877 67899999999999999999
Q ss_pred HHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------------HHhHHHHHHHHHhcCC
Q 003122 741 MMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS------------YGMFRDIVSFAQTRGG 807 (846)
Q Consensus 741 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------------~~~~~~l~~~~~~~~~ 807 (846)
|+..|+++++ +.| +..+|..++.+|.+.|++++|+..++++.+. .|+ ...+..++..+...|+
T Consensus 270 A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 270 AVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 9999999999 888 4669999999999999999999999999874 232 4678899999999999
Q ss_pred cchHHHHHHHHHHH
Q 003122 808 AEYAAIIQERIESL 821 (846)
Q Consensus 808 ~~~a~~~~~~l~~l 821 (846)
.++|..++++..+.
T Consensus 346 ~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 346 SDAYGAADARDLST 359 (368)
T ss_dssp GGGHHHHHTTCHHH
T ss_pred hHhHHHhHHHHHHH
Confidence 99999998765543
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=7.9e-19 Score=187.30 Aligned_cols=260 Identities=11% Similarity=0.006 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 512 TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISA 591 (846)
Q Consensus 512 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 591 (846)
...+..+...+.+.|++++|+..|+++++.. +.+..++..+...+...|++++|+..|+++++.. +.+..++..++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446666666777777777777777766653 3355666667777777777777777777766653 4456666677777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHH
Q 003122 592 YSKQGLIAEAESMFNMMKMSGCSPD-----------VITYTAMLHAYNTAEDWEKACALFLEMETNNIEP---DSIACSA 657 (846)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~ 657 (846)
|...|++++|+..|+++.+.. |+ ...+..++..+...|++++|+..|+++.+. .| +..++..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 218 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTG 218 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHH
Confidence 777777777777777666531 22 112223455566666666666666666653 22 3556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 003122 658 LMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR 737 (846)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 737 (846)
++..|...|++++|+..|+++++..+. +...+..++.+|...|++++|+..++++....|. +..+|..++.+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 666666666666666666666665443 4555666666666666666666666666555554 45556666666666666
Q ss_pred HHHHHHHHHHHHhcCCCcC-------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 738 IESMMKLFFKIVSSGAEAN-------------FNTYSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
+++|...|+++++ +.|+ ...|..++.++...|+.+.|....+
T Consensus 297 ~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 297 YREAVSNFLTALS--LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CHHHHHHHHHHHH--HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHH--hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 6666666666665 4443 2355556666666666655554443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=1.3e-18 Score=185.62 Aligned_cols=265 Identities=9% Similarity=0.013 Sum_probs=221.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 546 DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 546 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
+...+..+...+.+.|++++|+.+|+++++.. +.+..++..++.+|...|++++|+..|++++... +.+..+|..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34558888999999999999999999999875 6788999999999999999999999999999863 345899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPDS-----------IACSALMRAFNKGGQPSKVLLVAEFMREQDITF-SDSIFFEM 693 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l 693 (846)
+|...|++++|+..|+++.+ ..|+. ..+..++..+.+.|++++|+.+++++++.++.. +...+..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999987 33432 223345788999999999999999999976542 67889999
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCC
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGN 772 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 772 (846)
+.++...|++++|+..++++....|. +..+|..++.+|...|++++|+..|+++++ +.|+ ..+|..++.+|...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCC
Confidence 99999999999999999999988887 778999999999999999999999999999 8895 6699999999999999
Q ss_pred HHHHHHHHHHHHHCCCC---C--------CHHhHHHHHHHHHhcCCcchHHHHHHH
Q 003122 773 WRKYIEVLQWMEDAGIQ---P--------SYGMFRDIVSFAQTRGGAEYAAIIQER 817 (846)
Q Consensus 773 ~~~A~~~~~~~~~~g~~---p--------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 817 (846)
+++|+..++++.+..-. + +...+..+...+...|..+.+..+.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999874211 0 245678888888888888777766554
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=6.8e-18 Score=176.81 Aligned_cols=263 Identities=8% Similarity=-0.023 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 512 TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISA 591 (846)
Q Consensus 512 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 591 (846)
...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++++++.. +.+..++..++..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445667777788888888888888877653 3366677777888888888888888888887753 5567778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003122 592 YSKQGLIAEAESMFNMMKMSGCSPD-VITYTAM--------------LH-AYNTAEDWEKACALFLEMETNNIEPDSIAC 655 (846)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 655 (846)
|...|++++|...++++.... |+ ...+..+ .. .+...|++++|...++++.+.. +.+..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 888888888888888887742 22 2223222 22 3666777888888888887742 3356677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
..++..|...|++++|+..++++++..+. +...+..++.++...|++++|+..++++....|. +..++..++.+|...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 77788888888888888888888776544 5677777788888888888888888877766665 566777888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCcC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 736 GRIESMMKLFFKIVSSGAEAN-------------FNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 736 g~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
|++++|.+.++++++ ..|+ ..+|..++.+|.+.|++++|..+++++
T Consensus 254 g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIY--MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHH--HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHH--hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888888888888877 6665 347777777888888888887777654
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=4.4e-17 Score=180.48 Aligned_cols=382 Identities=11% Similarity=-0.049 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C---CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-
Q 003122 372 IVSYNALMAAYASHGMSKEALSVFNEIKKN-----G---LCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRIN-----N- 437 (846)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----~- 437 (846)
...|+.|...+...|++++|++.|++..+. + .+....+|+.+..+|...|++++|...+++.... +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456788888888888888888888776541 1 1123456777777777788888887777766531 0
Q ss_pred -CCcCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCccC
Q 003122 438 -LKPNLVSYSALIDAYGS--NGLLAEAVEVFREMEQDGIEPNIVSICTLLAA---CGRCGRKVNIDAVLLAAEMRDIKLN 511 (846)
Q Consensus 438 -~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~ 511 (846)
......++..+..++.. .+++++|++.|++.++.. +.+...+..+..+ +...++.++|...+..+...+ +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 01123455554444433 345777777777777642 2223333333222 223344444444444444332 123
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 512 TVAYNSAIGSYMN----VGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSS 587 (846)
Q Consensus 512 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 587 (846)
..++..+...+.. .|++++|...+++..... +.+...+..+...+...|++++|+..++++++.. |.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 3333333322222 233344444444443332 2233334444444444444444444444444432 233333433
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 588 VISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQ 667 (846)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 667 (846)
++.+|...+....+.. ...........+.+++|...+++..+.. +.+..++..++..|...|+
T Consensus 287 lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhcc
Confidence 3333322110000000 0000000011123566777777766631 2224456667777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 003122 668 PSKVLLVAEFMREQDITFSDS--IFFEMVL-ACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKL 744 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 744 (846)
+++|+..|+++++..+.+... .+..++. .+...|++++|+..++++....|. +.. ..+..+.+.++
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~-~~~----------~~~~~~~l~~~ 418 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK-SRE----------KEKMKDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC-CHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHH----------HHHHHHHHHHH
Confidence 777777777777754432221 2233333 234567777777777777666665 211 11223445566
Q ss_pred HHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003122 745 FFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 745 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 787 (846)
++++++ ..| +..+|..|+.+|...|++++|++.|+++++.|
T Consensus 419 ~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 419 AKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHH--HCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666666 666 45577777777777788888888777777643
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=1.6e-17 Score=169.60 Aligned_cols=256 Identities=11% Similarity=0.031 Sum_probs=195.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003122 521 SYMNVGEYEKAIALYKCMKKRKVMPDS--VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLI 598 (846)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 598 (846)
-....|+++.|+..++..... .|+. .....+..+|...|++++|+..++. .-+|+..++..++..+...|+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 345678888888888776554 3333 3445667888888888888876644 1356677788888888888889
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003122 599 AEAESMFNMMKMSGCSP-DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEF 677 (846)
Q Consensus 599 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (846)
++|++.++++...+..| +...+..++..+...|++++|++.+++ +.+..++..++..|.+.|++++|+..+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998888765445 466777788888888999999988887 35677888888888899999999999999
Q ss_pred HHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 678 MREQDITFSDSIF--FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 678 ~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
+++.++. +.... ..++..+...|++++|+.+++++....|. ++.+|+.++.++...|++++|++.|+++++ ..|
T Consensus 156 ~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p 231 (291)
T 3mkr_A 156 MQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALD--KDS 231 (291)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred HHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 8886543 22111 12224444568899999999988887776 778888999999999999999999999998 888
Q ss_pred -CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHh
Q 003122 756 -NFNTYSILLKNLLAAGNWRK-YIEVLQWMEDAGIQPSYGM 794 (846)
Q Consensus 756 -~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~~ 794 (846)
+..++..++..+...|++.+ +..+++++.+ +.|+...
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~ 270 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF 270 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence 55688888988889998876 5678888877 5676554
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.1e-16 Score=177.40 Aligned_cols=383 Identities=12% Similarity=-0.032 Sum_probs=259.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 003122 336 DIVTFTSIIHLYSVNGQIENCKGVFNTMLAE--------GLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKN-----G 402 (846)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g 402 (846)
....|+.|..++...|++++|++.|++.++. .......+|+.+...|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999998653 11224568999999999999999999999987652 1
Q ss_pred -CCC-CHhhHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHCCCCC
Q 003122 403 -LCP-DIVSYTSLLNAYGR--SQQPVKAREVFNMMRINNLKPNLVSYSALIDA---YGSNGLLAEAVEVFREMEQDGIEP 475 (846)
Q Consensus 403 -~~p-~~~~~~~ll~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~g~~~ 475 (846)
..+ ...++..+..++.. .+++++|...|++..+.. +-+...+..+... +...++.++|++.+++.++.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 111 24556666655554 457999999999998764 3355556555554 345688889999999998864 34
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 003122 476 NIVSICTLLAACGR----CGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYT 551 (846)
Q Consensus 476 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 551 (846)
+...+..+...+.. .|+.++|...++...... +.+..++..+...|...|++++|+..|++..+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55666666555544 467889999999888764 4578889999999999999999999999998863 33566777
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003122 552 VLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAE 631 (846)
Q Consensus 552 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 631 (846)
.+...|...+... .... ...........+.+++|...|++..... +.+..++..++..|...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 7766653321111 1110 0011111222344688899999888753 334677888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH----HHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 632 DWEKACALFLEMETNNIEPDSI----ACSALMR-AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTT 706 (846)
Q Consensus 632 ~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 706 (846)
++++|+..|+++++. .|+.. .+..+.. .+.+.|+.++|+..|+++++..+. ..... +....+
T Consensus 349 ~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~---------~~~~~l 415 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKE---------KMKDKL 415 (472)
T ss_dssp CHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHH---------HHHHHH
Confidence 999999999999984 44432 2333333 345789999999999999986554 22111 223445
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 707 IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
..++++....+|. ++.+|..|+.+|...|++++|++.|+++++ +.|
T Consensus 416 ~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe--~~~ 461 (472)
T 4g1t_A 416 QKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLE--SGS 461 (472)
T ss_dssp HHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 5666777667777 678999999999999999999999999999 555
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.6e-17 Score=174.08 Aligned_cols=266 Identities=10% Similarity=0.017 Sum_probs=227.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003122 548 VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAY 627 (846)
Q Consensus 548 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 627 (846)
..+..+...+...|++++|..+++++++.. +.+..++..++.++...|++++|...|+++.+.. +.+..++..++..|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 346677888999999999999999999864 6688899999999999999999999999999863 44688999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH--------------HH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 003122 628 NTAEDWEKACALFLEMETNNIEPD-SIACSAL--------------MR-AFNKGGQPSKVLLVAEFMREQDITFSDSIFF 691 (846)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 691 (846)
...|++++|+..++++.+. .|+ ...+..+ .. .+...|++++|+..++++++..+. +...+.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 176 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHA 176 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHH
Confidence 9999999999999999984 343 2233332 22 377889999999999999987765 788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhc
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAA 770 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 770 (846)
.++.++...|++++|+..++++....|. +..+|..++.++...|++++|...++++++ ..| +..+|..++.+|...
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999888877 678899999999999999999999999999 788 466999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-------------HHhHHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q 003122 771 GNWRKYIEVLQWMEDAGIQPS-------------YGMFRDIVSFAQTRGGAEYAAIIQERIESLRM 823 (846)
Q Consensus 771 g~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~ 823 (846)
|++++|+..++++.+. .|+ ...+..++..+...|+.++|..++++..+..+
T Consensus 254 g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp TCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9999999999999874 344 55778889999999999999999876655443
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=4.8e-17 Score=166.10 Aligned_cols=246 Identities=10% Similarity=0.055 Sum_probs=179.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH
Q 003122 515 YNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKI-PLTNQVYSSVISAYS 593 (846)
Q Consensus 515 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 593 (846)
...+..+|...|+++.|+..++.. .+|+..++..+...+...++.++|++.+++++..+. |.+...+..++.++.
T Consensus 37 ~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~ 112 (291)
T 3mkr_A 37 DVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF 112 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 344566777788888777655431 245666777777788888888888888888877653 445667777778888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChhH
Q 003122 594 KQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIAC---SALMRAFNKGGQPSK 670 (846)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~---~~l~~~~~~~g~~~~ 670 (846)
..|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++.+. .|+.... ..++..+...|++++
T Consensus 113 ~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~e 184 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQD 184 (291)
T ss_dssp HTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHH
T ss_pred HCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHH
Confidence 88888888888876 356778888888888888888888888888873 4553211 123344445688888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 003122 671 VLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES-MMKLFFKIV 749 (846)
Q Consensus 671 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 749 (846)
|+.+|+++++..+. +...++.++.++...|++++|+..++++....|. ++.++..++..+...|+.++ +.+++++++
T Consensus 185 A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 185 AYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88888888887554 7778888888888888888888888888888777 77888889988888888765 578888998
Q ss_pred hcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 750 SSGAEANFNTYSILLKNLLAAGNWRKYIEV 779 (846)
Q Consensus 750 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 779 (846)
+ +.|+..... +...+.+.++++..-
T Consensus 263 ~--~~P~~~~~~---d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 263 D--AHRSHPFIK---EYRAKENDFDRLVLQ 287 (291)
T ss_dssp H--HCTTCHHHH---HHHHHHHHHHHHHHH
T ss_pred H--hCCCChHHH---HHHHHHHHHHHHHHH
Confidence 8 888654322 234445555555443
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=8.8e-17 Score=166.79 Aligned_cols=283 Identities=14% Similarity=0.203 Sum_probs=128.3
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003122 136 QRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAM 215 (846)
Q Consensus 136 ~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 215 (846)
+.|++++|.++++.+. .+.+|..|+.++.+.|++++|.+.|... +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4578999999998773 2358999999999999999999999653 56778999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 003122 216 NIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTN 295 (846)
Q Consensus 216 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 295 (846)
..++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 977766663 4557788899999999999999888874 267779999999999999999999999977
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003122 296 IRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSY 375 (846)
Q Consensus 296 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 375 (846)
..|..++.++.+.|++++|++.++++. ++.+|..++.+|...|+++.|......+. ..|+ -.
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l 210 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--EL 210 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hH
Confidence 368899999999999999999999882 68899999999999999999966655422 2333 34
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCc------CHHHHHH
Q 003122 376 NALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRS--QQPVKAREVFNMMRINNLKP------NLVSYSA 447 (846)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~ 447 (846)
..++..|.+.|.+++|..+++..+... ......|+-|.-.|++- +++.+.++.|..- -+++| +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHH
Confidence 568889999999999999999987643 33456677776666654 3444555544311 12222 3456888
Q ss_pred HHHHHHhCCCHHHHHHHH
Q 003122 448 LIDAYGSNGLLAEAVEVF 465 (846)
Q Consensus 448 li~~~~~~g~~~~A~~~~ 465 (846)
+...|...++++.|....
T Consensus 288 ~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 288 LVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHH
Confidence 888888888888887743
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=3.7e-17 Score=169.55 Aligned_cols=281 Identities=14% Similarity=0.205 Sum_probs=87.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 312 KLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEA 391 (846)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 391 (846)
+.|++++|.++++++ ++..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|
T Consensus 15 ~~~~ld~A~~fae~~--------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRAYEFAERC--------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC--------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHH
Confidence 445555555555554 12335555555555555555555555432 2444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003122 392 LSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQD 471 (846)
Q Consensus 392 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (846)
+..++...+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+++.|...|.+++|..+|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 5544444432 2334445555555555555555554442 234445555555555555555555555533
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 003122 472 GIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYT 551 (846)
Q Consensus 472 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 551 (846)
..|..++.++.+.|++++|++.++++ .+..+|.
T Consensus 149 -----------------------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk 181 (449)
T 1b89_A 149 -----------------------------------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 181 (449)
T ss_dssp -----------------------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHH
T ss_pred -----------------------------------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHH
Confidence 13555666666666666666666655 1455666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 003122 552 VLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTA- 630 (846)
Q Consensus 552 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~- 630 (846)
.++.+|...|+++.|...... +...+.-...++..|.+.|++++|+.+++..+... +-....|+.|..+|++-
T Consensus 182 ~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~ 255 (449)
T 1b89_A 182 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 255 (449)
T ss_dssp HHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC
Confidence 666666666666666433332 11222333345566666666666666666665432 23355555555555542
Q ss_pred -CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChhHHHH
Q 003122 631 -EDWEKACALFLEMETNNIEP------DSIACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 631 -g~~~~A~~~~~~~~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~~ 673 (846)
++..+.+++|..-+ +++| +...|.-+.-.|.+.++++.|..
T Consensus 256 p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 256 PQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 23333333332211 1222 23346666666666677666654
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=1.6e-16 Score=154.89 Aligned_cols=198 Identities=13% Similarity=0.024 Sum_probs=144.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 003122 579 PLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSA 657 (846)
Q Consensus 579 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~ 657 (846)
|++...+..++..+.+.|++++|+..|+++++.. +.+...+..++.++.+.|++++|+..|+++++ +.|+ ...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHH
Confidence 5566677777777888888888888888877653 33477777788888888888888888888877 3443 567777
Q ss_pred HHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHH
Q 003122 658 LMRAFNKG-----------GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLN 726 (846)
Q Consensus 658 l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 726 (846)
+..++... |++++|+..++++++.+|. +...+..++.++...|++++|+..++++.... .++.++.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 77777777 8888888888888887665 67788888888888888888888888887766 3778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
.++.+|...|++++|+..|+++++ +.| +...+..++.+|...|++++|+..+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 899999999999999999999998 888 45688888888999999999988888764
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.3e-16 Score=156.78 Aligned_cols=223 Identities=14% Similarity=0.070 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHH
Q 003122 548 VTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSG--CSPD----VITYT 621 (846)
Q Consensus 548 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~ 621 (846)
..+..+...+...|++++|+.+++++++.. .+..++..++.+|...|++++|+..++++.... ..++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666777777666666654 556666667777777777777777777666531 0112 46677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 622 AMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR 701 (846)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 701 (846)
.++..|...|++++|+..|+++.+ +.|+. ..+.+.|++++|+..++++....+. +...+..++.++...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 777777777777777777777776 34553 3355567777888888877775543 5566777777888888
Q ss_pred CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 702 DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 702 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 780 (846)
++++|+..++++....|. +..+|..++.+|...|++++|...++++++ ..|+ ..+|..++.+|.+.|++++|+..+
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888888887777666 567788888888888888888888888888 7774 568888888888888888888888
Q ss_pred HHHHH
Q 003122 781 QWMED 785 (846)
Q Consensus 781 ~~~~~ 785 (846)
+++.+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88876
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.5e-15 Score=152.84 Aligned_cols=226 Identities=8% Similarity=0.019 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC--CCC----HHHH
Q 003122 512 TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKI--PLT----NQVY 585 (846)
Q Consensus 512 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 585 (846)
...+..+...+...|++++|+..|+++.+.. .+...+..+...+...|++++|+..++++++... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567788888999999999999999988876 6778888999999999999999999999886431 112 5788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 003122 586 SSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNK 664 (846)
Q Consensus 586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~ 664 (846)
..++.+|...|++++|...|+++... .|+. ..+...|++++|...++++... .|+ ...+..++..+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 89999999999999999999999985 4553 3456678899999999999983 444 5678889999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 003122 665 GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKL 744 (846)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 744 (846)
.|++++|+..++++++..+. +...+..++.++...|++++|+..++++....|. +..+|..++.++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999987765 7888999999999999999999999999888877 678899999999999999999999
Q ss_pred HHHHHhcCCC
Q 003122 745 FFKIVSSGAE 754 (846)
Q Consensus 745 ~~~~~~~g~~ 754 (846)
++++++ +.
T Consensus 230 ~~~a~~--~~ 237 (258)
T 3uq3_A 230 LDAART--KD 237 (258)
T ss_dssp HHHHHH--HH
T ss_pred HHHHHH--hC
Confidence 999998 77
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=8.8e-17 Score=179.56 Aligned_cols=113 Identities=14% Similarity=0.166 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 003122 196 ETYNALISAHGRAGQWRWAMNIFDDML---RAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVL 272 (846)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 272 (846)
.||++||++||+.|++++|.++|++|. +.|+.||..|||+||++||+.|++++|.++|++|.+.|+.||++|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 344444444444444444444444433 22444555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCC-HHHHHHHHHHHHhCCCCCChHHHHHHHH
Q 003122 273 SAYKNGAQ-YSKALSYFELMKGTNIRPDTTTHNIVIY 308 (846)
Q Consensus 273 ~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~ 308 (846)
.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 55555444 2444455555555555555555554443
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.70 E-value=3.1e-15 Score=157.84 Aligned_cols=245 Identities=7% Similarity=0.034 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 512 TVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSR-YSEALGFLDEMMDLKIPLTNQVYSSVIS 590 (846)
Q Consensus 512 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 590 (846)
..+|+.+...+.+.|++++|+..|+++++.. +-+...|..+...+...|+ +++|+..++++++.+ +.+..+|..++.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3445556666666666666666666666543 2245556666666666664 666666666666653 445566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh-cCCh
Q 003122 591 AYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNK-GGQP 668 (846)
Q Consensus 591 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~-~g~~ 668 (846)
++...|++++|+..|++++... +-+...|..+..++...|++++|+..|+++++ +.| +..+|+.+..++.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 6666666666666666666642 22456666666666666666666666666666 233 35566666666666 4444
Q ss_pred hHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC-----
Q 003122 669 SKV-----LLVAEFMREQDITFSDSIFFEMVLACSLLR--DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG----- 736 (846)
Q Consensus 669 ~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 736 (846)
++| +..|+++++.++. +...|..++.++...| ++++|++.++++ ...|. +..++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~-~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS-SPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC-CHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC-CHHHHHHHHHHHHHHhccccc
Confidence 555 3566666665544 4555556666665555 456666666655 34443 4455556666665542
Q ss_pred ----CHHHHHHHHHHH-HhcCCCcCHH-HHHHHHHH
Q 003122 737 ----RIESMMKLFFKI-VSSGAEANFN-TYSILLKN 766 (846)
Q Consensus 737 ----~~~~A~~~~~~~-~~~g~~p~~~-~~~~l~~~ 766 (846)
.+++|+++|+++ ++ ++|... .|..++..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKE--KDTIRKEYWRYIGRS 362 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence 245666666666 55 566333 44444443
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=2.6e-15 Score=152.52 Aligned_cols=236 Identities=8% Similarity=-0.043 Sum_probs=156.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 003122 550 YTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD--VITYTAMLHAY 627 (846)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~ 627 (846)
+......+...|++++|+..++++++.. +.+..++..++.+|...|++++|+..++++......++ ...|..++..|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3445555666677777777777766653 33444666666677777777777777777766321111 33467777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 628 NTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTI 707 (846)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 707 (846)
...|++++|+..|+++.+.. +.+..++..++.+|...|++++|+..++++++..+. +...+..++..+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777631 223556777777777777777777777777766444 5566666663344445777777
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC---cCH------HHHHHHHHHHHhcCCHHH
Q 003122 708 DLIKQMEPSFHVVSIGLLNQLLHLLGKSGR---IESMMKLFFKIVSSGAE---ANF------NTYSILLKNLLAAGNWRK 775 (846)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~---p~~------~~~~~l~~~~~~~g~~~~ 775 (846)
..++++....|. +..++..++.++...|+ +++|...++++++ .. |+. .+|..++..|...|++++
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE--VCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH--HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH--HHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 777777766666 45667777777777777 7778888888776 33 431 367777788888888888
Q ss_pred HHHHHHHHHHCCCCCCHH
Q 003122 776 YIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 776 A~~~~~~~~~~g~~p~~~ 793 (846)
|+..++++.+ +.|+..
T Consensus 240 A~~~~~~al~--~~p~~~ 255 (272)
T 3u4t_A 240 ADAAWKNILA--LDPTNK 255 (272)
T ss_dssp HHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHh--cCccHH
Confidence 8888888877 455543
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=1.7e-15 Score=147.52 Aligned_cols=198 Identities=15% Similarity=0.028 Sum_probs=164.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 614 SPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFE 692 (846)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 692 (846)
+++...+..++..+.+.|++++|+..|+++++. .| +...+..+..++.+.|++++|+..++++++.+|. +...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 456788999999999999999999999999984 45 5788999999999999999999999999998776 7888999
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHH
Q 003122 693 MVLACSLL-----------RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYS 761 (846)
Q Consensus 693 l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 761 (846)
++.++... |++++|+..++++....|. +..+|..++.+|...|++++|+..|+++++. ..+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALAL--EDTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--ccchHHHH
Confidence 99999999 9999999999999999888 7789999999999999999999999999994 46677999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCcchHHHHHHHHH
Q 003122 762 ILLKNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQTRGGAEYAAIIQERIE 819 (846)
Q Consensus 762 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~l~ 819 (846)
.++.+|...|++++|+..++++.+. .| ++..+..++..+...|+.++|...++++-
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999884 55 45678888999999999999998887653
No 42
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=5.9e-17 Score=180.95 Aligned_cols=165 Identities=14% Similarity=0.165 Sum_probs=136.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003122 158 ARNDIYNMMIRLHARHNQIDKARGLFFEMQK---WRCKPDAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYN 234 (846)
Q Consensus 158 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 234 (846)
....+||+||++||+.|++++|.++|++|.+ .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456899999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC------hHHHHHHH
Q 003122 235 NLINACGSTGN-WREALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPD------TTTHNIVI 307 (846)
Q Consensus 235 ~ll~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~li 307 (846)
+||.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999998 578999999999999999999999999776553 344444444 3344444 55666677
Q ss_pred HHHHhcC---------CHHHHHHHHHHHH
Q 003122 308 YCLVKLG---------QYDKAIDLFHSMR 327 (846)
Q Consensus 308 ~~~~~~g---------~~~~A~~~~~~~~ 327 (846)
+.|.+.+ ..++-.++|++-+
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHHHH
Confidence 7777655 2456666665543
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=3.5e-15 Score=157.42 Aligned_cols=244 Identities=9% Similarity=0.045 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003122 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGL-IAEAESMFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 547 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
...|..+...+...|++++|+..++++++.. |.+..+|..++.++...|+ +++|+..|++++... +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4467778888899999999999999999875 6678899999999999997 999999999999863 335899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCH
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL-LRDW 703 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 703 (846)
++...|++++|+..|+++++ +.| +..+|..+..++.+.|++++|+..|+++++.++. +...|+.++.++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999998 445 5789999999999999999999999999998877 88899999999998 6665
Q ss_pred HHH-----HHHHHhhccCCCccchhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcC----
Q 003122 704 KTT-----IDLIKQMEPSFHVVSIGLLNQLLHLLGKSG--RIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAG---- 771 (846)
Q Consensus 704 ~~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g---- 771 (846)
++| +..++++....|. +..+|+.++.++...| ++++|.+.+.++ + ..|+ ..++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccc
Confidence 777 5889999888888 7789999999999988 699999999988 6 7885 568899999998875
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCCHH-hHHHHHHH
Q 003122 772 -----NWRKYIEVLQWM-EDAGIQPSYG-MFRDIVSF 801 (846)
Q Consensus 772 -----~~~~A~~~~~~~-~~~g~~p~~~-~~~~l~~~ 801 (846)
..++|+++++++ .+ +.|... .|..+...
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRS 362 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence 258999999998 55 555433 34444433
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=8.1e-15 Score=159.96 Aligned_cols=346 Identities=11% Similarity=0.035 Sum_probs=207.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 003122 378 LMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQP---VKAREVFNMMRINNLKPNLVSYSALIDAYGS 454 (846)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 454 (846)
+...+.+.|++++|..+|++..+.| +...+..|...|...|+. ++|...|++..+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4556667777777877777776654 334445566666666666 7777777776643 44445555554444
Q ss_pred CC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHH
Q 003122 455 NG-----LLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYE 529 (846)
Q Consensus 455 ~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 529 (846)
.+ ++++|+..|++..+.|. ++ .+..|...|...+....+ .
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~--------------------------------~ 126 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPN--------------------------------V 126 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTT--------------------------------C
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCC--------------------------------H
Confidence 43 56677777777776542 22 333333333322221111 2
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 003122 530 KAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALG----FLDEMMDLKIPLTNQVYSSVISAYSKQG---LIAEAE 602 (846)
Q Consensus 530 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 602 (846)
++...+......| +...+..+...|...+.++++.. +++.... .+...+..|..+|...| +.++|+
T Consensus 127 ~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 127 NAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELL 199 (452)
T ss_dssp CHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHH
Confidence 2334444444333 23344455556666554443333 3333322 22237777777888888 888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChhHHHHHH
Q 003122 603 SMFNMMKMSGCSPDVITYTAMLHAYNTA----EDWEKACALFLEMETNNIEPDSIACSALMRA-F--NKGGQPSKVLLVA 675 (846)
Q Consensus 603 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~ 675 (846)
..|++..+.| .++...+..|...|... +++++|+.+|++.. . -+...+..|... | ...|++++|+.+|
T Consensus 200 ~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 200 KQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp HHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 8888888776 45566666777777554 68888888888876 2 245566666666 3 4578888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHH
Q 003122 676 EFMREQDITFSDSIFFEMVLACSLLR-----DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK----SGRIESMMKLFF 746 (846)
Q Consensus 676 ~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 746 (846)
+++.+.| +......++.+|. .| ++++|+.++++.. +. ++.++..|+.+|.. ..++++|...|+
T Consensus 275 ~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g-~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 275 DNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR-EVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT-CHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC-CHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 8888866 6777778888777 55 8899999998887 22 56778888888876 348999999999
Q ss_pred HHHhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 003122 747 KIVSSGAEANFNTYSILLKNLLA----AGNWRKYIEVLQWMEDAGI 788 (846)
Q Consensus 747 ~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 788 (846)
++.+.| +......|+..|.. ..+..+|..+|+++.+.|.
T Consensus 347 ~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 347 TAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 998743 34567778888775 3578899999999987763
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=7.7e-15 Score=148.97 Aligned_cols=238 Identities=12% Similarity=0.001 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 003122 583 QVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD--SIACSALMR 660 (846)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~ 660 (846)
..+...+..+...|++++|+..|+++++.. +.+...+..++.+|...|++++|+..++++++.+..++ ..+|..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345667888999999999999999999863 23466899999999999999999999999998432222 445889999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 661 AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
++...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....|. +..+|..++..+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997766 6788999999999999999999999999988877 77889999945555669999
Q ss_pred HHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCCH------HhHHHHHHHHHhcCCcc
Q 003122 741 MMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGN---WRKYIEVLQWMEDAG-IQPSY------GMFRDIVSFAQTRGGAE 809 (846)
Q Consensus 741 A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g-~~p~~------~~~~~l~~~~~~~~~~~ 809 (846)
|.+.|+++++ ..|+ ...+..++.++...|+ +++|+..++++.+.. -.|++ ..+..++..+...|+.+
T Consensus 161 A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 161 ADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999 8895 6688899999999998 899999999988742 11332 36777889999999999
Q ss_pred hHHHHHHHHHHHhhcc
Q 003122 810 YAAIIQERIESLRMKS 825 (846)
Q Consensus 810 ~a~~~~~~l~~l~~~~ 825 (846)
+|...++++.++.+..
T Consensus 239 ~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 239 KADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCccH
Confidence 9999999999987654
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=5.6e-15 Score=161.19 Aligned_cols=110 Identities=7% Similarity=-0.110 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 003122 630 AEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGG-----QPSKVLLVAEFMREQDITFSDSIFFEMVLACSL----L 700 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 700 (846)
.+++++|+.+|++..+.| +..++..|...|. .| ++++|+.+|+++. .| +......++.+|.. .
T Consensus 264 ~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~ 335 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGK 335 (452)
T ss_dssp GCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSS
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCC
Confidence 444444444444444433 3333444444443 22 4444444444444 22 33444444444433 2
Q ss_pred CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 003122 701 RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK----SGRIESMMKLFFKIVS 750 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 750 (846)
.++++|+.++++....+. +.+...|+.+|.. ..+.++|...|+++.+
T Consensus 336 ~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 336 VYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp CCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 244555555554433221 2234445554442 2355555555555555
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=8.6e-14 Score=141.28 Aligned_cols=224 Identities=10% Similarity=0.001 Sum_probs=157.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003122 546 DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSK----QGLIAEAESMFNMMKMSGCSPDVITYT 621 (846)
Q Consensus 546 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 621 (846)
+..++..+...+...|++++|+..|+++.+ +.+...+..++..|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 444555666666666677777777766666 2344566666666776 777777777777776653 566677
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 622 AMLHAYNT----AEDWEKACALFLEMETNNIEPDSIACSALMRAFNK----GGQPSKVLLVAEFMREQDITFSDSIFFEM 693 (846)
Q Consensus 622 ~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 693 (846)
.+...|.. .+++++|+..|++..+.+ +..++..+...|.. .|++++|+..|+++.+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777776 777777777777777643 56667777777777 777777777777777754 45566667
Q ss_pred HHHHHh----cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q 003122 694 VLACSL----LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK----SGRIESMMKLFFKIVSSGAEANFNTYSILLK 765 (846)
Q Consensus 694 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 765 (846)
+.+|.. .+++++|+.+++++.... ++.++..++.+|.. .+++++|+..|+++++ ..| ...+..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~~~-~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE--LEN-GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH--TTC-HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh--CCC-HHHHHHHHH
Confidence 777766 777777777777766543 34567778888887 8888888888888887 444 557777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCC
Q 003122 766 NLLA----AGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 766 ~~~~----~g~~~~A~~~~~~~~~~g 787 (846)
+|.. .|++++|+..++++.+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8887 888888888888887754
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=4.5e-15 Score=150.90 Aligned_cols=247 Identities=11% Similarity=-0.063 Sum_probs=178.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 524 NVGEYEKAIALYKCMKKRKVM---PDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAE 600 (846)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 600 (846)
..|++++|+..|+++.+.... .+..++..++..+...|++++|...++++++.. +.+..++..++.+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 356788888888888875321 134567777888888888888888888888764 5567888888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 601 AESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
|...|++++... +.+...+..++.+|...|++++|...|+++.+ ..|+.......+..+...|++++|+..++++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888888753 33577888888888888888888888888887 445544444444455667888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 681 QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV---SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 681 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
..+. +... ..++..+...++.++|+..++++....+.. ...+|..++.+|...|++++|...|+++++ ..|+.
T Consensus 173 ~~~~-~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 248 (275)
T 1xnf_A 173 KSDK-EQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 248 (275)
T ss_dssp HSCC-CSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred cCCc-chHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh
Confidence 5433 3333 346667777788888888888876655532 256778888888888888888888888888 77743
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 003122 758 NTYSILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~~~ 780 (846)
. ...+.++...|++++|++.+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 2 22355677788888887765
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=1.2e-13 Score=140.24 Aligned_cols=228 Identities=11% Similarity=0.025 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 003122 511 NTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCR----LSRYSEALGFLDEMMDLKIPLTNQVYS 586 (846)
Q Consensus 511 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 586 (846)
+..++..+...|...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677788888899999999999999998884 356778888888888 999999999999999875 778888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 587 SVISAYSK----QGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT----AEDWEKACALFLEMETNNIEPDSIACSAL 658 (846)
Q Consensus 587 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 658 (846)
.++..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +..++..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999864 78889999999998 999999999999999865 56778888
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCccchhhHHHHHH
Q 003122 659 MRAFNK----GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL----LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLH 730 (846)
Q Consensus 659 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 730 (846)
...|.. .+++++|+..|+++.+.+ +...+..++.+|.. .+++++|+.+++++....+ ..++..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence 888888 899999999999999865 56788889999999 9999999999999887755 567889999
Q ss_pred HHHh----cCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 731 LLGK----SGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 731 ~~~~----~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
+|.. .+++++|.+.|+++++ ..|+..
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~--~~~~~a 256 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK--LGAKGA 256 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH--HTCHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH--cCCHHH
Confidence 9998 9999999999999999 666443
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=5e-14 Score=141.09 Aligned_cols=198 Identities=7% Similarity=-0.024 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 583 QVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAF 662 (846)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 662 (846)
..+..++..+...|++++|...|+++.... +.+...+..++..|...|++++|.+.++++.+.. +.+...+..++..|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 445555556666666666666666665542 2245566666666666666666666666666531 22455566666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 003122 663 NKGGQPSKVLLVAEFMREQDITF-SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESM 741 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 741 (846)
...|++++|+.+++++.+.+..| +...+..++.++...|++++|+..++++....|. +..++..++.+|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666511122 3445556666666666666666666666655554 456667777777777777777
Q ss_pred HHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 742 MKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 742 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
...++++++ ..| +...+..++..|...|++++|...++++.+
T Consensus 195 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777 666 344666677777777777777777777766
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=8.7e-15 Score=145.65 Aligned_cols=198 Identities=12% Similarity=0.086 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 582 NQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRA 661 (846)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 661 (846)
...+..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+..++..++..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555666666666666666666666532 2345666666666666667777777666666531 2245566666666
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 003122 662 FNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESM 741 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 741 (846)
+...|++++|+..++++.+..+. +...+..++.++...|++++|+..++++....|. +..++..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777665543 5566666677777777777777777776665555 556677777777777888888
Q ss_pred HHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 742 MKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 742 ~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+..++++++ ..| +..++..++.+|...|++++|+..++++.+
T Consensus 179 ~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTE--QDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 888888777 666 355777777778888888888888887776
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=7.3e-14 Score=139.84 Aligned_cols=208 Identities=12% Similarity=0.026 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003122 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHA 626 (846)
Q Consensus 547 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (846)
...+..+...+...|++++|...++++++.. +.+..++..++.+|...|++++|.+.|+++.+.. +.+...+..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3456667777778888888888888887753 5567788888888888888888888888888753 3357788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 627 YNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 705 (846)
|...|++++|+++++++.+.+..|+ ...+..++.++...|++++|+..++++++..+. +...+..++.++...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 8888899999998888877333453 567778888888899999999999998886654 67788888889999999999
Q ss_pred HHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHH
Q 003122 706 TIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTY 760 (846)
Q Consensus 706 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 760 (846)
|+..++++....|. +..++..++..+...|++++|.+.++++++ ..|+...+
T Consensus 194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSHHH
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCHHH
Confidence 99999988877776 667888899999999999999999999998 78865543
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=1.2e-14 Score=144.61 Aligned_cols=214 Identities=10% Similarity=0.020 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003122 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHA 626 (846)
Q Consensus 547 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (846)
...|..+...+...|++++|..+++++++.. +.+..++..++..+...|++++|+..|+++.+.. +.+...+..++..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3445555666666677777777777766643 4456667777777777777777777777776642 2356677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 627 YNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTT 706 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 706 (846)
+...|++++|...++++.+.. +.+...+..++..+...|++++|+..++++++..+. +...+..++.++...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777777632 334666777777777788888888888877776544 566777777888888888888
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHH
Q 003122 707 IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNL 767 (846)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 767 (846)
+..++++....|. +..++..++.+|...|++++|...++++++ +.|+ ..++..+....
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchHHHHHHHHHHH
Confidence 8888877766665 567788888888889999999999999988 7784 44555544433
No 54
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=1.3e-11 Score=138.83 Aligned_cols=217 Identities=8% Similarity=0.047 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 565 EALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAE-SMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEM 643 (846)
Q Consensus 565 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 643 (846)
....+|++++.. ++.+...|...+..+...|+.++|. .+|+..... ++.+...|..++....+.|++++|.++|+++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666654 3567777777777777777777775 788777764 3445666677777777778888888888777
Q ss_pred HHCC---------CCCC------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C
Q 003122 644 ETNN---------IEPD------------SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL-R 701 (846)
Q Consensus 644 ~~~g---------~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 701 (846)
++.. -.|+ ..+|...+....+.|..+.|..+|.++++.-+......|...+..-... +
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 7521 0131 2357777777777788888888888887751122344554444444444 3
Q ss_pred CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC---H-HHHHHHHHHHHhcCCHHHHH
Q 003122 702 DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN---F-NTYSILLKNLLAAGNWRKYI 777 (846)
Q Consensus 702 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~-~~~~~l~~~~~~~g~~~~A~ 777 (846)
+.+.|..+|+.+.+..|. +...|..++......|+.+.|+.+|++++. ..|+ . ..|..++..-.+.|..+.+.
T Consensus 485 d~e~Ar~ife~~Lk~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~--~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFAT-DGEYINKYLDFLIYVNEESQVKSLFESSID--KISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp CCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTT--TSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 478888888887776665 566777777777778888888888888887 4442 2 36666677777778888888
Q ss_pred HHHHHHHHC
Q 003122 778 EVLQWMEDA 786 (846)
Q Consensus 778 ~~~~~~~~~ 786 (846)
.+.+++.+.
T Consensus 562 ~v~~R~~~~ 570 (679)
T 4e6h_A 562 TLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888774
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=1e-14 Score=157.79 Aligned_cols=311 Identities=11% Similarity=0.031 Sum_probs=209.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCC-CC
Q 003122 511 NTVAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPD----SVTYTVLISSCCRLSRYSEALGFLDEMMDL----KIP-LT 581 (846)
Q Consensus 511 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~ 581 (846)
....+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++++.. +.+ ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44556666777778888888888888877753 223 245667777788888888888888876542 111 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHH
Q 003122 582 NQVYSSVISAYSKQGLIAEAESMFNMMKMSGC-SPD----VITYTAMLHAYNTAED--------------------WEKA 636 (846)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~~~A 636 (846)
..++..++..|...|++++|...++++..... .++ ..++..++..|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45677788888888888888888887765210 012 4477888888888888 8888
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHH
Q 003122 637 CALFLEMETN----NIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDIT-FS----DSIFFEMVLACSLLRDWKTT 706 (846)
Q Consensus 637 ~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A 706 (846)
+..+++..+. +..+. ..++..++..|...|++++|+..++++++.... ++ ...+..++.++...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888887641 11121 346778888888999999999999888863221 11 23677888889999999999
Q ss_pred HHHHHhhccCCCc-----cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---C----HHHHHHHHHHHHhcCCHH
Q 003122 707 IDLIKQMEPSFHV-----VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA---N----FNTYSILLKNLLAAGNWR 774 (846)
Q Consensus 707 ~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~----~~~~~~l~~~~~~~g~~~ 774 (846)
+..++++....+. ....++..++..|...|++++|...++++++ +.+ + ..++..++.+|...|+++
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA--IAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 9998887543322 1256788999999999999999999999987 433 1 447888899999999999
Q ss_pred HHHHHHHHHHHCC----CCCC-HHhHHHHHHHHHhcCCc-chHHHHHHHHHHHhhc
Q 003122 775 KYIEVLQWMEDAG----IQPS-YGMFRDIVSFAQTRGGA-EYAAIIQERIESLRMK 824 (846)
Q Consensus 775 ~A~~~~~~~~~~g----~~p~-~~~~~~l~~~~~~~~~~-~~a~~~~~~l~~l~~~ 824 (846)
+|+..++++.+.. ..+. ...+..++..+...|+. ..+..+.+....+...
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 380 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSS 380 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--------------
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 9999999876631 1111 22456666666666654 3344444444444333
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=1.1e-13 Score=135.77 Aligned_cols=200 Identities=10% Similarity=-0.016 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 581 TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMR 660 (846)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 660 (846)
+..++..++..+...|++++|...|+++.+.. +.+...+..++..|...|++++|...++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34455566666666666666666666666542 2345666666666666666667766666666531 224556666666
Q ss_pred HHHhc-CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 003122 661 AFNKG-GQPSKVLLVAEFMREQDITF-SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRI 738 (846)
Q Consensus 661 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 738 (846)
.+... |++++|+..++++++.+..| +...+..++.++...|++++|+..++++....|. +..++..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 66666 77777777777666621111 2455666666677777777777777766665555 456677777777777777
Q ss_pred HHHHHHHHHHHhcCCCc-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 739 ESMMKLFFKIVSSGAEA-N-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++|...++++++ ..| + ...+..++..+...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQS--RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 777777777777 555 4 33555555667777777777777777765
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=2.1e-13 Score=133.70 Aligned_cols=208 Identities=12% Similarity=-0.007 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003122 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHA 626 (846)
Q Consensus 547 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 626 (846)
...+..++..+...|++++|...++++++.. +.+..++..++..|...|++++|...++++.... +.+..++..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4455666666777777777777777766643 4456677777777777777777777777777653 3356777777778
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 627 YNTA-EDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWK 704 (846)
Q Consensus 627 ~~~~-g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 704 (846)
+... |++++|+..++++.+.+..|+ ...+..++.++...|++++|+..++++++..+. +...+..++.++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888776323343 556777777888888888888888888876544 5677778888888888888
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHH
Q 003122 705 TTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNT 759 (846)
Q Consensus 705 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 759 (846)
+|+..++++....|..+...+..++..+...|+.++|...++.+.+ ..|+...
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~ 217 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHH
Confidence 8888888877766622566677777888888888888888888887 6775543
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=5e-14 Score=133.37 Aligned_cols=164 Identities=13% Similarity=0.145 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003122 616 DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMV 694 (846)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 694 (846)
+..+|..++..|...|++++|++.|++.++ +.| +..++..++.+|.+.|++++|+..++++....+. +...+..++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 345566666666666666666666666665 233 3455666666666666666666666666655443 455555566
Q ss_pred HHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCH
Q 003122 695 LACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNW 773 (846)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 773 (846)
..+...++++.|...++++....|. +..++..++.+|...|++++|++.|+++++ +.| +..+|..++.+|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhhhHHHHHHHHHHHCCCH
Confidence 6666666666666666666555555 556666677777777777777777777776 666 344666677777777777
Q ss_pred HHHHHHHHHHHH
Q 003122 774 RKYIEVLQWMED 785 (846)
Q Consensus 774 ~~A~~~~~~~~~ 785 (846)
++|+..|+++++
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777777665
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=1.3e-14 Score=157.38 Aligned_cols=270 Identities=10% Similarity=0.031 Sum_probs=198.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHC----C-CCCCHHH
Q 003122 514 AYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDS----VTYTVLISSCCRLSRYSEALGFLDEMMDL----K-IPLTNQV 584 (846)
Q Consensus 514 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~ 584 (846)
.+..+...+...|++++|+..|+++++.+ +.+. ..+..+...+...|++++|+..++++++. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34456667778888888888888887753 2232 35677777888888888888888877653 1 1223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 003122 585 YSSVISAYSKQGLIAEAESMFNMMKMS----GCSP-DVITYTAMLHAYNTAED-----------------WEKACALFLE 642 (846)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~ 642 (846)
+..++..|...|++++|...++++... +-.+ ...++..++..|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 777888888888988888888887652 1111 24577888888888888 8888888888
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003122 643 METN----NIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDIT-FS----DSIFFEMVLACSLLRDWKTTIDLIKQ 712 (846)
Q Consensus 643 ~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 712 (846)
..+. +..+ ...++..+...|...|++++|+..++++++.... .+ ...+..++.++...|++++|+..+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7652 1111 1347778888899999999999999988863221 11 22677888889999999999998887
Q ss_pred hccCCCc-----cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 713 MEPSFHV-----VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-------FNTYSILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 713 ~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~ 780 (846)
+....+. ....++..++.+|...|++++|...++++++ +.++ ..++..++.+|...|++++|...+
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA--IAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 7544332 1256788899999999999999999999987 4331 237888899999999999999999
Q ss_pred HHHHHC
Q 003122 781 QWMEDA 786 (846)
Q Consensus 781 ~~~~~~ 786 (846)
+++.+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998763
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=1.8e-14 Score=158.18 Aligned_cols=214 Identities=12% Similarity=0.006 Sum_probs=175.8
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 563 YSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLI-AEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFL 641 (846)
Q Consensus 563 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (846)
+++++..+++.... .+.+...+..++.+|...|++ ++|+..|+++++.. +.+...|..++.+|...|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666666665554 245777888888888888888 88888888888753 2347888888888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 003122 642 EMETNNIEPDSIACSALMRAFNKG---------GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL--------RDWK 704 (846)
Q Consensus 642 ~~~~~g~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 704 (846)
++++ +.|+..++..+..+|... |++++|+..|+++++..+. +...+..++.+|... |+++
T Consensus 162 ~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8887 567777888888888888 8899999999999887765 678888888888888 8899
Q ss_pred HHHHHHHhhccCCCc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 705 TTIDLIKQMEPSFHV--VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 705 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
+|+..++++....|. .+..+|..++.+|...|++++|.+.|+++++ +.|+ ..++..++.++...|++++|++.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998887772 2778899999999999999999999999999 8895 5588899999999999999987665
Q ss_pred HH
Q 003122 782 WM 783 (846)
Q Consensus 782 ~~ 783 (846)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=5.2e-14 Score=142.98 Aligned_cols=245 Identities=11% Similarity=-0.051 Sum_probs=191.6
Q ss_pred HhcCCHhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 558 CRLSRYSEALGFLDEMMDLKI---PLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWE 634 (846)
Q Consensus 558 ~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 634 (846)
...|++++|+..++++++... +.+..++..++.++...|++++|...|+++.... +.+..+|..++..|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345789999999999998632 2245778899999999999999999999999864 346899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 003122 635 KACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQME 714 (846)
Q Consensus 635 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 714 (846)
+|+..|+++++.. +.+..++..++.+|.+.|++++|+..++++++..+. ..........+...|++++|+..+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--DPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999842 335788999999999999999999999999986654 3333444455677899999999998877
Q ss_pred cCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 715 PSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-----FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 715 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
...|. +...+ .++..+...++.++|...++++++ ..|+ ..+|..++.+|...|++++|+..++++.+ +.
T Consensus 172 ~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~ 245 (275)
T 1xnf_A 172 EKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADAT--DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NN 245 (275)
T ss_dssp HHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC
T ss_pred hcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhc--ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CC
Confidence 66665 33334 477788888999999999999988 6663 46889999999999999999999999987 44
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHH
Q 003122 790 PSYGMFRDIVSFAQTRGGAEYAAII 814 (846)
Q Consensus 790 p~~~~~~~l~~~~~~~~~~~~a~~~ 814 (846)
|+.. ......+...++.++|...
T Consensus 246 p~~~--~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 246 VHNF--VEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp CTTC--HHHHHHHHHHHHHHHC---
T ss_pred chhH--HHHHHHHHHHHHHHhhHHH
Confidence 5332 1223334444444444433
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=2.3e-14 Score=155.34 Aligned_cols=274 Identities=11% Similarity=-0.001 Sum_probs=217.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHH
Q 003122 549 TYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTN----QVYSSVISAYSKQGLIAEAESMFNMMKMS----GCSP-DVIT 619 (846)
Q Consensus 549 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~ 619 (846)
.+..+...+...|++++|+..++++++.. +.+. .++..++..|...|++++|+..+++++.. +..| ....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 45566778899999999999999999864 3343 47888999999999999999999988762 1112 2567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCC-----------------hhHHHHHHHH
Q 003122 620 YTAMLHAYNTAEDWEKACALFLEMETN----NIEPD-SIACSALMRAFNKGGQ-----------------PSKVLLVAEF 677 (846)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~ 677 (846)
+..++..|...|++++|...++++.+. +-.+. ..++..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 889999999999999999999998762 11222 4578889999999999 9999999998
Q ss_pred HHHCC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc-----chhhHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 678 MREQD----I-TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV-----SIGLLNQLLHLLGKSGRIESMMKLFFK 747 (846)
Q Consensus 678 ~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 747 (846)
+++.. . ......+..++.++...|++++|+..++++....+.. ...++..++.+|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 87531 1 1123477889999999999999999999876543321 233788999999999999999999999
Q ss_pred HHhcCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCCcchHHHHH
Q 003122 748 IVSSGAEAN-------FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PS----YGMFRDIVSFAQTRGGAEYAAIIQ 815 (846)
Q Consensus 748 ~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~ 815 (846)
+++ +.|+ ..++..++.+|...|++++|+..++++.+..-. ++ ...+..++..+...|+.++|...+
T Consensus 289 al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 289 TLA--LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHH--HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 988 5442 358889999999999999999999998763111 11 236777889999999999999999
Q ss_pred HHHHHHhhcc
Q 003122 816 ERIESLRMKS 825 (846)
Q Consensus 816 ~~l~~l~~~~ 825 (846)
++..++.+++
T Consensus 367 ~~al~~~~~~ 376 (411)
T 4a1s_A 367 EQHLQLAXXX 376 (411)
T ss_dssp HHHHHHCCHH
T ss_pred HHHHHHHhhc
Confidence 9988876554
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=5.2e-14 Score=152.11 Aligned_cols=279 Identities=10% Similarity=0.008 Sum_probs=219.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC
Q 003122 544 MPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLT----NQVYSSVISAYSKQGLIAEAESMFNMMKMS----GCSP 615 (846)
Q Consensus 544 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p 615 (846)
......+......+...|++++|+..++++++.. +.+ ..++..++..|...|++++|...++++... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3456667778888999999999999999999864 334 357888999999999999999999987652 2112
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCC--------------------hh
Q 003122 616 D-VITYTAMLHAYNTAEDWEKACALFLEMETNN-IEPD----SIACSALMRAFNKGGQ--------------------PS 669 (846)
Q Consensus 616 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~----~~~~~~l~~~~~~~g~--------------------~~ 669 (846)
. ..++..++..|...|++++|+..++++.+.. -.++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2 5678889999999999999999999987621 0112 4478888999999999 99
Q ss_pred HHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc-----cchhhHHHHHHHHHhcCCHH
Q 003122 670 KVLLVAEFMREQ----DIT-FSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV-----VSIGLLNQLLHLLGKSGRIE 739 (846)
Q Consensus 670 ~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~ 739 (846)
+|+..++++++. +.. .....+..++.++...|++++|+..++++....+. ....++..++.+|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999988753 111 12346788899999999999999999987544322 12347899999999999999
Q ss_pred HHHHHHHHHHhcCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCC
Q 003122 740 SMMKLFFKIVSSGAEAN-------FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PS----YGMFRDIVSFAQTRGG 807 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~~~ 807 (846)
+|...++++++ +.|+ ..++..++.+|...|++++|+..++++.+.... ++ ...+..++..+...|+
T Consensus 245 ~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 245 TASEYYKKTLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH--HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999987 4442 448889999999999999999999998763211 12 3367788899999999
Q ss_pred cchHHHHHHHHHHHhhcc
Q 003122 808 AEYAAIIQERIESLRMKS 825 (846)
Q Consensus 808 ~~~a~~~~~~l~~l~~~~ 825 (846)
.++|...+++..++.+..
T Consensus 323 ~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999888876554
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=1.5e-13 Score=129.97 Aligned_cols=175 Identities=11% Similarity=0.048 Sum_probs=151.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003122 580 LTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALM 659 (846)
Q Consensus 580 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 659 (846)
.+..+|..++..|...|++++|+..|++.++.. +-+..+|..++.+|.+.|++++|+..++++.... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 467788999999999999999999999998863 3358889999999999999999999999998742 33467788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 003122 660 RAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIE 739 (846)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 739 (846)
..+...++++.|...++++.+..+. +...+..++.++...|++++|++.++++...+|. +..+|..++.+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 8899999999999999999987665 7788889999999999999999999999888887 7889999999999999999
Q ss_pred HHHHHHHHHHhcCCCcCHHHH
Q 003122 740 SMMKLFFKIVSSGAEANFNTY 760 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p~~~~~ 760 (846)
+|++.|+++++ +.|+...|
T Consensus 159 ~A~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 159 EAVKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp HHHHHHHHHHH--TTHHHHHH
T ss_pred HHHHHHHHHHh--CCccCHHH
Confidence 99999999999 88876433
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=7.7e-11 Score=132.56 Aligned_cols=471 Identities=9% Similarity=0.027 Sum_probs=276.4
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 003122 249 ALKVCKKMTENGVGPDLVTHNIVLSAYKNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQ---YDKAIDLFHS 325 (846)
Q Consensus 249 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~ 325 (846)
.+..|++.+..+. -|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.|+ ++.+..+|++
T Consensus 51 ~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3444454444433 37777777777777777777777777777765 34455666666776667777 7777777777
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHHc-CC-CCC-HHHHHHHHHHHH---------hc
Q 003122 326 MREKRSECLPDIVTFTSIIHLYSVNGQI--------ENCKGVFNTMLAE-GL-KPN-IVSYNALMAAYA---------SH 385 (846)
Q Consensus 326 ~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~-g~-~p~-~~~~~~li~~~~---------~~ 385 (846)
.+...+. .|++..|...+....+.++. +.+.++|+.++.. |. .++ ...|...+.... ..
T Consensus 129 al~~~~~-~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 129 CLSKELG-NNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HTCSSSC-CCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHhcCC-CCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 7654321 25666676666655444432 2233555555442 44 333 345555544332 12
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHH
Q 003122 386 GMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVF 465 (846)
Q Consensus 386 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (846)
++++.+..+|++++......-..+|...... .+.-+...+.+++.+ ...+++.|...+
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~f-e~~~~~~~a~~~~~e---------------------~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQW-EQDVNQLTARRHIGE---------------------LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHH-HHHHCTTTHHHHHHH---------------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-HHhcCcchHHHHHHH---------------------hhHHHHHHHHHH
Confidence 3345555556555532111001111111110 000000001111110 011223333333
Q ss_pred HHHHHC--CCC---CCH-HHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcC-------CHHHH
Q 003122 466 REMEQD--GIE---PNI-VSICTLLAACGRCG-RKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVG-------EYEKA 531 (846)
Q Consensus 466 ~~~~~~--g~~---~~~-~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A 531 (846)
.++... ++. |.. .+.. ....-..+ .... ....|...+..--..+ ..+.+
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~---------------ql~lW~~yi~fEk~~~~~l~~~~~~~Rv 328 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQ---------------QLLIWLEWIRWESDNKLELSDDLHKARM 328 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHH---------------HHHHHHHHHHHHHTCTTCCCHHHHHHHH
T ss_pred HHHHHHHHhHhhccccccccch--hccCCCCchhHHH---------------HHHHHHHHHHHHHhCCccccchhhHHHH
Confidence 332211 110 000 0000 00000000 0000 0123444443332222 12345
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 532 IALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEAL-GFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKM 610 (846)
Q Consensus 532 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (846)
..+|++.+... +-+...|...+..+...|+.++|. .+|+.++.. .|.+...|...+....+.|++++|..+|+.++.
T Consensus 329 ~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66787777652 346777888888888889999996 999999875 467777888888999999999999999999886
Q ss_pred cC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CC
Q 003122 611 SG---------CSPD------------VITYTAMLHAYNTAEDWEKACALFLEMETN-NIEPDSIACSALMRAFNKG-GQ 667 (846)
Q Consensus 611 ~~---------~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~-g~ 667 (846)
.. -.|+ ...|...+....+.|+.+.|..+|.++++. + ......|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCC
Confidence 31 0131 346888888888899999999999999985 2 12233444443333444 45
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc--cchhhHHHHHHHHHhcCCHHHHHHHH
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV--VSIGLLNQLLHLLGKSGRIESMMKLF 745 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 745 (846)
.+.|..+|+.+++.-+. +...+...++.....|+.+.|..+|+++....+. ....+|...+..-.+.|+.+.+..+.
T Consensus 486 ~e~Ar~ife~~Lk~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKYFAT-DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999999986443 6677778888888899999999999999877663 35678999999999999999999999
Q ss_pred HHHHhcCCCcCHHHHHHHHHHH
Q 003122 746 FKIVSSGAEANFNTYSILLKNL 767 (846)
Q Consensus 746 ~~~~~~g~~p~~~~~~~l~~~~ 767 (846)
+++.+ ..|+......+.+-|
T Consensus 565 ~R~~~--~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 565 KRFFE--KFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHH--HSTTCCHHHHHHHHT
T ss_pred HHHHH--hCCCCcHHHHHHHHh
Confidence 99999 888655444444433
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.57 E-value=7.5e-14 Score=146.35 Aligned_cols=268 Identities=13% Similarity=0.039 Sum_probs=174.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----C-CCCCHHHH
Q 003122 515 YNSAIGSYMNVGEYEKAIALYKCMKKRKVMPD----SVTYTVLISSCCRLSRYSEALGFLDEMMDL----K-IPLTNQVY 585 (846)
Q Consensus 515 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~ 585 (846)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...++++++. + .+....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 4445566777788888888887777653 222 245666777777778888888777776542 1 11224456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 003122 586 SSVISAYSKQGLIAEAESMFNMMKMSG-CSPD----VITYTAMLHAYNTAED--------------------WEKACALF 640 (846)
Q Consensus 586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 640 (846)
..++..|...|++++|...+++..... -.++ ..++..++..|...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 677777888888888888877766521 0112 3466777777777777 78888777
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 641 LEMETN----NIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDIT-FS----DSIFFEMVLACSLLRDWKTTIDLI 710 (846)
Q Consensus 641 ~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~ 710 (846)
++.... +..+. ..++..+...+...|++++|+..++++++.... .+ ...+..++.++...|++++|+..+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776541 11111 335667777788888888888888877753111 01 225666777777777777777777
Q ss_pred HhhccCCCc-----cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-------HHHHHHHHHHHHhcCCHHHHHH
Q 003122 711 KQMEPSFHV-----VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-------FNTYSILLKNLLAAGNWRKYIE 778 (846)
Q Consensus 711 ~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 778 (846)
+++....+. ....++..++..|...|++++|...++++++ +.+. ..++..++.+|...|++++|..
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA--IAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 765433221 1245667777778888888888888887776 3321 2366677777888888888888
Q ss_pred HHHHHHH
Q 003122 779 VLQWMED 785 (846)
Q Consensus 779 ~~~~~~~ 785 (846)
.++++.+
T Consensus 325 ~~~~a~~ 331 (338)
T 3ro2_A 325 FAEKHLE 331 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877765
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=9.9e-14 Score=145.42 Aligned_cols=274 Identities=11% Similarity=0.010 Sum_probs=212.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHH
Q 003122 549 TYTVLISSCCRLSRYSEALGFLDEMMDLKIPLT----NQVYSSVISAYSKQGLIAEAESMFNMMKMS----GCSPD-VIT 619 (846)
Q Consensus 549 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~ 619 (846)
.+......+...|++++|+..++++++.. +.+ ..++..++..|...|++++|...++++... +..+. ..+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34556677889999999999999999864 334 367888999999999999999999987652 11122 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCC--------------------hhHHHHH
Q 003122 620 YTAMLHAYNTAEDWEKACALFLEMETNN-IEPD----SIACSALMRAFNKGGQ--------------------PSKVLLV 674 (846)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~----~~~~~~l~~~~~~~g~--------------------~~~A~~~ 674 (846)
+..++..|...|++++|...++++.+.. -.++ ..++..+...+...|+ +++|+..
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 8889999999999999999999987621 0122 3478888999999999 9999999
Q ss_pred HHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc-----cchhhHHHHHHHHHhcCCHHHHHHH
Q 003122 675 AEFMREQ----DI-TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV-----VSIGLLNQLLHLLGKSGRIESMMKL 744 (846)
Q Consensus 675 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 744 (846)
++++++. +. ......+..++.++...|++++|+..++++....+. ....++..++..+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9888752 11 112346788899999999999999999987543222 1244788999999999999999999
Q ss_pred HHHHHhcCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCCcchHH
Q 003122 745 FFKIVSSGAEAN-------FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PS----YGMFRDIVSFAQTRGGAEYAA 812 (846)
Q Consensus 745 ~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~ 812 (846)
++++++ +.|+ ..++..++.+|...|++++|+..++++.+.... .+ ...+..++..+...|+.++|.
T Consensus 246 ~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 246 YKKTLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHH--HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999987 4432 447888999999999999999999998763111 11 225677889999999999999
Q ss_pred HHHHHHHHHhhcc
Q 003122 813 IIQERIESLRMKS 825 (846)
Q Consensus 813 ~~~~~l~~l~~~~ 825 (846)
..+++..++.++.
T Consensus 324 ~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 324 HFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHhh
Confidence 9999999877654
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=7.7e-13 Score=141.64 Aligned_cols=234 Identities=10% Similarity=0.006 Sum_probs=179.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---CC-CHHHHH
Q 003122 588 VISAYSKQGLIAEAESMFNMMKMSG-CSPD----VITYTAMLHAYNTAEDWEKACALFLEMETN--NI---EP-DSIACS 656 (846)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~---~p-~~~~~~ 656 (846)
.+..+...|++++|+..|+++...- -.++ ..++..++..|...|++++|+..+++..+. .. .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 5667788899999999999887630 0122 467888888999999999999999988762 11 11 134778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHhhcc-----CC-CccchhhH
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDITF-S----DSIFFEMVLACSLLRDWKTTIDLIKQMEP-----SF-HVVSIGLL 725 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~~~~~~ 725 (846)
.++.+|...|++++|+..++++++..... + ..++..++.+|...|++++|+..++++.. .. |. ...++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS-LPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG-HHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh-HHHHH
Confidence 88889999999999999999988632211 1 23678899999999999999999998865 44 33 57789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----cC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHhH
Q 003122 726 NQLLHLLGKSGRIESMMKLFFKIVSSGAE-----AN-FNTYSILLKNLLAAGN---WRKYIEVLQWMEDAGIQPS-YGMF 795 (846)
Q Consensus 726 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-----p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~ 795 (846)
..++.+|...|++++|...++++++ +. |. ...+..++..|...|+ +++|+.++++. +..|+ ...+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMA--YSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 9999999999999999999999987 43 32 2245667888999999 77787777765 23333 2356
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhhccCC
Q 003122 796 RDIVSFAQTRGGAEYAAIIQERIESLRMKSGD 827 (846)
Q Consensus 796 ~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~~~ 827 (846)
..++..+...|++++|...+++..++.+++..
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 77889999999999999999999999888765
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=5.5e-13 Score=142.78 Aligned_cols=230 Identities=9% Similarity=-0.038 Sum_probs=167.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCC--CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---C-CHHHHH
Q 003122 553 LISSCCRLSRYSEALGFLDEMMDLK--IPL---TNQVYSSVISAYSKQGLIAEAESMFNMMKMS--GCS---P-DVITYT 621 (846)
Q Consensus 553 li~~~~~~g~~~~A~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p-~~~~~~ 621 (846)
....+...|++++|...++++.+.- .+. ...++..++.+|...|++++|...+++.+.. ... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4555677788888888888887531 111 2356777888888888888888888887752 111 1 145778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 003122 622 AMLHAYNTAEDWEKACALFLEMETNNI-EPD----SIACSALMRAFNKGGQPSKVLLVAEFMRE-----QDITFSDSIFF 691 (846)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 691 (846)
.++..|...|++++|+..|+++++..- .++ ..++..++.+|...|++++|+..++++++ ........++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888888889999999998888875210 112 24777888889999999999999998887 22122456778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCC----CccchhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCcC-HHHHHHH
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSF----HVVSIGLLNQLLHLLGKSGR---IESMMKLFFKIVSSGAEAN-FNTYSIL 763 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l 763 (846)
.++.++...|++++|+..++++.... .......+..++..+...|+ +++|...+++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 88889999999999999888875432 11123336778899999998 77777777776 24554 3478889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003122 764 LKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+..|...|++++|...++++.+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999876
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=2.4e-13 Score=154.98 Aligned_cols=163 Identities=13% Similarity=0.148 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVL 695 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 695 (846)
..+|+.|+..|.+.|++++|++.|+++++ +.|+ ..++..++.+|.+.|++++|+..|+++++.++. +...+..++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 67888889999999999999999999888 4565 678888999999999999999999999987766 6788889999
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHH
Q 003122 696 ACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWR 774 (846)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 774 (846)
++...|++++|++.++++.+.+|. +..+|+.++.+|...|++++|++.|+++++ +.|+ ..+|..|+.+|...|+|+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999998888887 778999999999999999999999999999 8995 568999999999999999
Q ss_pred HHHHHHHHHHH
Q 003122 775 KYIEVLQWMED 785 (846)
Q Consensus 775 ~A~~~~~~~~~ 785 (846)
+|.+.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988866
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=6.5e-12 Score=129.68 Aligned_cols=233 Identities=11% Similarity=0.087 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhc----CCH----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHH
Q 003122 548 VTYTVLISSCCRL----SRY----SEALGFLDEMMDLKIPLTNQVYSSVISAYSK-------QGLI-------AEAESMF 605 (846)
Q Consensus 548 ~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~ 605 (846)
..|...+....+. ++. ++|...|++++... |.+...|..++..+.. .|++ ++|..+|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 3455565544332 233 68888999998863 6788888888887763 5775 8999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 003122 606 NMMKMSGCSP-DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SI-ACSALMRAFNKGGQPSKVLLVAEFMREQD 682 (846)
Q Consensus 606 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (846)
++.+.. +.| +...|..++..+...|++++|..+|+++++ +.|+ .. +|..++..+.+.|++++|+.+|+++++.+
T Consensus 88 ~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 88 ERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999873 134 467899999999999999999999999998 5564 33 78888888999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcC--HH
Q 003122 683 ITFSDSIFFEMVLACS-LLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG-AEAN--FN 758 (846)
Q Consensus 683 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~ 758 (846)
+. +...|...+.... ..|++++|+.+++++....|. +..+|..++..+.+.|++++|+.+|+++++.. +.|+ ..
T Consensus 165 p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 RT-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp TC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred CC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 54 4555554444432 369999999999998887777 77889999999999999999999999999842 3553 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 759 TYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 759 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
.|..++..+.+.|++++|..+++++.+.
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888899999999999998874
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=3.1e-13 Score=148.45 Aligned_cols=210 Identities=9% Similarity=-0.046 Sum_probs=182.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDW-EKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLV 674 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 674 (846)
.+++++..++...... +.+...+..++..|...|++ ++|++.|+++++. .|+ ..+|..++.+|.+.|++++|+..
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4677777887766542 34688999999999999999 9999999999984 454 78999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc--------CC
Q 003122 675 AEFMREQDITFSDSIFFEMVLACSLL---------RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS--------GR 737 (846)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 737 (846)
|+++++.++ +...+..++.++... |++++|+..++++....|. +..+|..++.+|... |+
T Consensus 160 ~~~al~~~p--~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHCK--NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhCC--CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 999999664 578899999999999 9999999999999988888 788999999999999 99
Q ss_pred HHHHHHHHHHHHhcCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCcchHH
Q 003122 738 IESMMKLFFKIVSSGAEA----NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFAQTRGGAEYAA 812 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~ 812 (846)
+++|++.|+++++ +.| +...|..++.+|...|++++|+..|+++.+ +.|+ ...+..+...+...++.++|.
T Consensus 237 ~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 237 SQQALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 888 456999999999999999999999999988 4564 446777778888888777777
Q ss_pred HHHH
Q 003122 813 IIQE 816 (846)
Q Consensus 813 ~~~~ 816 (846)
..++
T Consensus 313 ~~~~ 316 (474)
T 4abn_A 313 ESKG 316 (474)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 6553
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=6.8e-12 Score=129.51 Aligned_cols=222 Identities=10% Similarity=0.004 Sum_probs=179.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-------hcCCH-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 529 EKAIALYKCMKKRKVMPDSVTYTVLISSCC-------RLSRY-------SEALGFLDEMMDLKIPLTNQVYSSVISAYSK 594 (846)
Q Consensus 529 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 594 (846)
++|+..|++.+... +.+...|..++..+. ..|++ ++|..+|+++++.-.|.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888887753 346667777776665 35775 8999999999983235567789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChhHH
Q 003122 595 QGLIAEAESMFNMMKMSGCSPD-VI-TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFN-KGGQPSKV 671 (846)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~~g~~~~A 671 (846)
.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++++.. +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999984 454 43 89999999999999999999999999842 234445554444332 37999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccC---CCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPS---FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKI 748 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 748 (846)
..+|+++++..+. +...+..++..+...|+.++|+.+++++... .|.....+|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999987665 7888999999999999999999999999875 33336778999999999999999999999999
Q ss_pred HhcCCCcCH
Q 003122 749 VSSGAEANF 757 (846)
Q Consensus 749 ~~~g~~p~~ 757 (846)
++ ..|+.
T Consensus 268 ~~--~~p~~ 274 (308)
T 2ond_A 268 FT--AFREE 274 (308)
T ss_dssp HH--HTTTT
T ss_pred HH--Hcccc
Confidence 99 77853
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=143.01 Aligned_cols=247 Identities=12% Similarity=0.091 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC------C
Q 003122 511 NTVAYNSAIGSYMNVGEYEKAIALYKCMKKR-------KVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL------K 577 (846)
Q Consensus 511 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 577 (846)
...++..+...+...|++++|+.+|+++.+. ........+..+...+...|++++|...++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666777777777777777666552 11222344555666666666666666666666542 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 003122 578 -IPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMS------GCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETN--- 646 (846)
Q Consensus 578 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 646 (846)
.+....++..++..|...|++++|...|+++.+. +..|+ ...+..++..|...|++++|+.+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1222344555555666666666666666655542 11111 344555555555556666666655555542
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc---
Q 003122 647 ---NIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV--- 719 (846)
Q Consensus 647 ---g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 719 (846)
+..|+ ..++..++.+|...|++++|+..++++++..+. ..+ + ...+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~----------~-------------~~~~~~~~ 239 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE---REF----------G-------------SVDDENKP 239 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HHH----------C-------------------CC
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---hcC----------C-------------CCCcchHH
Confidence 11221 234445555555555555555555555542100 000 0 00000
Q ss_pred --cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 720 --VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 720 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.....+..++..+...+.+.+|...++++.. ..|+ ..++..++.+|.+.|++++|+..++++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0112223334444455666667777777776 5663 44777888888888888888888887765
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=142.98 Aligned_cols=256 Identities=15% Similarity=0.089 Sum_probs=175.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCccCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------C
Q 003122 476 NIVSICTLLAACGRCGRKVNIDAVLLAAEMR-------DIKLNTVAYNSAIGSYMNVGEYEKAIALYKCMKKR------K 542 (846)
Q Consensus 476 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~ 542 (846)
+..++..+...+...|++++|...+..+... ..+....++..+...|...|++++|+..+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567888889999999999999999998873 33445678899999999999999999999998764 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 003122 543 VMP-DSVTYTVLISSCCRLSRYSEALGFLDEMMDL------K-IPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMS--- 611 (846)
Q Consensus 543 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 611 (846)
..| ...++..+...+...|++++|...++++++. + .+....++..++..|...|++++|+..|+++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 122 3557888899999999999999999999864 2 1234467888999999999999999999999874
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 003122 612 ---GCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSD 687 (846)
Q Consensus 612 ---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (846)
+..|+ ..++..++.+|...|++++|...++++.+. .++.. +..+ -..... ... ..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~-~~~~---~~~~~~---~~~------------~~ 244 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR--AHERE-FGSV---DDENKP---IWM------------HA 244 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHHH-HC---------CC---HHH------------HH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhc-CCCC---CcchHH---HHH------------HH
Confidence 21232 567889999999999999999999999872 11100 0000 000000 000 01
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 688 SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
..+...+..+...+.+.++...++......|. ...++..++.+|...|++++|.+.|+++++ +.|
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~~ 309 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAMR--SRK 309 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHC
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--Hhh
Confidence 11112222333444555555666665555444 567788889999999999999999999887 544
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.49 E-value=2.5e-12 Score=126.35 Aligned_cols=200 Identities=10% Similarity=-0.010 Sum_probs=139.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 003122 580 LTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD-SIACSAL 658 (846)
Q Consensus 580 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 658 (846)
.+...+..++..+...|++++|+..|++.++....++...+..++.++...|++++|+..|++.++ ..|+ ..++..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHH
Confidence 456777778888888888888888888888764226677777788888888888888888888887 4454 5577788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc-chhhHHHHHH
Q 003122 659 MRAFNKGGQPSKVLLVAEFMREQDITFSD-------SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV-SIGLLNQLLH 730 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~ 730 (846)
+.+|...|++++|+..++++++..+. +. ..+..++.++...|++++|+..++++....|.. ...+|..++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 88888888888888888888876554 44 446777777777788888888888777666641 2456777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 731 LLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 731 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
+|...| ...++++.. +.+ +...|.. ......|.+++|+..++++.+ +.|+..
T Consensus 162 ~~~~~~-----~~~~~~a~~--~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~--l~p~~~ 214 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATP--LASSNKEKYAS--EKAKADAAFKKAVDYLGEAVT--LSPNRT 214 (228)
T ss_dssp HHHHHH-----HHHHHHHGG--GTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHH-----HHHHHHHHh--cccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhh--cCCCCH
Confidence 775443 344555555 333 2223322 224445667888888888887 456543
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.47 E-value=1.4e-12 Score=148.74 Aligned_cols=171 Identities=8% Similarity=-0.002 Sum_probs=156.8
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHH
Q 003122 649 EPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQ 727 (846)
Q Consensus 649 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 727 (846)
.|+ ..+++.|+.+|.+.|++++|+..|+++++..+. +...+..++.+|...|++++|++.++++.+.+|. ...+|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 354 668999999999999999999999999998776 7889999999999999999999999999999988 7899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhc
Q 003122 728 LLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFAQTR 805 (846)
Q Consensus 728 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 805 (846)
++.+|...|++++|++.|+++++ +.|+ ..+|..++.+|.+.|++++|++.|+++++ +.|+ ...+.+++..+...
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhc
Confidence 99999999999999999999999 9995 56999999999999999999999999998 5675 56788999999999
Q ss_pred CCcchHHHHHHHHHHHhhcc
Q 003122 806 GGAEYAAIIQERIESLRMKS 825 (846)
Q Consensus 806 ~~~~~a~~~~~~l~~l~~~~ 825 (846)
++.++|.+.++++.++..+.
T Consensus 159 g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 159 CDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp TCCTTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhChhH
Confidence 99999999999999987654
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.45 E-value=9.5e-12 Score=132.77 Aligned_cols=236 Identities=10% Similarity=-0.010 Sum_probs=165.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---CC-CHHHH
Q 003122 587 SVISAYSKQGLIAEAESMFNMMKMSG-CSPD----VITYTAMLHAYNTAEDWEKACALFLEMETNN--I---EP-DSIAC 655 (846)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~---~p-~~~~~ 655 (846)
..+..+...|++++|+..|+++...- -.++ ..++..++..|...|++++|+..++++.+.. . .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 44556677888888888888877531 0122 4567778888888888888888888877520 1 11 13467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc-----CCCccchhhH
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQDI--T---FSDSIFFEMVLACSLLRDWKTTIDLIKQMEP-----SFHVVSIGLL 725 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 725 (846)
..++.+|...|++++|++.++++++... . ....++..++.+|...|++++|+..++++.. ..|.. ..++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHH
Confidence 7788888888888888888888876311 1 1134567788888888888888888888776 56653 7788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC---CcCH-HHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHhHHH
Q 003122 726 NQLLHLLGKSGRIESMMKLFFKIVSSGA---EANF-NTYSILLKNLLAAGN---WRKYIEVLQWMEDAGIQPS-YGMFRD 797 (846)
Q Consensus 726 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~ 797 (846)
..++.+|.+.|++++|...++++++... .|.. ..+..+...|...|+ +.+|+..+++. +..|+ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 8888888888999999999988887321 2222 245555666777787 77777777652 22222 235567
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHhhccC
Q 003122 798 IVSFAQTRGGAEYAAIIQERIESLRMKSG 826 (846)
Q Consensus 798 l~~~~~~~~~~~~a~~~~~~l~~l~~~~~ 826 (846)
++..+...|++++|...+++..++.+++.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 78888888888888888888888776654
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.42 E-value=1.3e-11 Score=131.84 Aligned_cols=229 Identities=10% Similarity=0.014 Sum_probs=164.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---CC-CHHHHH
Q 003122 553 LISSCCRLSRYSEALGFLDEMMDLKI-PL----TNQVYSSVISAYSKQGLIAEAESMFNMMKMS--GC---SP-DVITYT 621 (846)
Q Consensus 553 li~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~---~p-~~~~~~ 621 (846)
....+...|++++|+..++++.+... .+ ...++..++.+|...|+++.|...+++.... .. .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456677888888888888775311 11 2346777888888888888888888887652 11 11 145677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 003122 622 AMLHAYNTAEDWEKACALFLEMETN----NIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMRE-----QDITFSDSIFF 691 (846)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 691 (846)
.++.+|...|++++|+..|++.++. +..+ ...++..++.+|...|++++|+..++++++ ..+. ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 8888888888999998888888752 1111 134677788888889999999999988887 4444 366778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCC----ccchhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCcC-HHHHHHH
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFH----VVSIGLLNQLLHLLGKSGR---IESMMKLFFKIVSSGAEAN-FNTYSIL 763 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l 763 (846)
.++.++...|++++|+..++++....+ ......+..+...+...|+ +++|...+++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 888889999999999998888754321 1133456777777888888 77787777762 24454 3377788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003122 764 LKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+..|.+.|++++|...++++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998865
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=1.1e-10 Score=124.33 Aligned_cols=270 Identities=10% Similarity=-0.057 Sum_probs=193.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCCH----HHHH
Q 003122 516 NSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSV----TYTVLISSCCRLSRYSEALGFLDEMMDLKI-PLTN----QVYS 586 (846)
Q Consensus 516 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~ 586 (846)
......+...|++++|...+++........+.. .+..+...+...|++++|...+++...... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455667889999999988877754222322 455666778888999999999988775310 1122 3356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHHH
Q 003122 587 SVISAYSKQGLIAEAESMFNMMKMS----GCS--PD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIE--P--DSIAC 655 (846)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p--~~~~~ 655 (846)
.+...+...|++++|...+++.+.. +.. |. ...+..+...+...|++++|...+++..+..-. + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 7788889999999999999888752 221 22 456677888899999999999999998863211 1 24567
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHhhccCCCcc---chhhHH
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQDITFS-DSIFF-----EMVLACSLLRDWKTTIDLIKQMEPSFHVV---SIGLLN 726 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 726 (846)
..+...+...|++++|...++++......+. ...+. ..+.++...|++++|..++++.....+.. ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7888889999999999999999886422211 11221 23345778999999999999987655431 133567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----CCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSS----GAEANF-NTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.++.++...|++++|...++++++. |..++. ..+..++.+|...|++++|...++++.+
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8899999999999999999998762 111122 2677788889999999999999998865
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.41 E-value=2.9e-11 Score=118.67 Aligned_cols=207 Identities=11% Similarity=0.042 Sum_probs=162.3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003122 545 PDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-VITYTAM 623 (846)
Q Consensus 545 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 623 (846)
.|...+......+...|++++|+..|+++++...+++...+..++.++...|++++|+..|++.++. .|+ ...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 4667888899999999999999999999998764378888888999999999999999999999985 454 7889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEPD-S-------IACSALMRAFNKGGQPSKVLLVAEFMREQDITF-SDSIFFEMV 694 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~ 694 (846)
+.+|...|++++|+..+++.++ ..|+ . .+|..+...+...|++++|++.|+++++.++.. +...+..++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 9999999999999999999998 4454 4 458888899999999999999999999864320 246777888
Q ss_pred HHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHH
Q 003122 695 LACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN-TYSILLK 765 (846)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~ 765 (846)
.++...|+ ..++++....+. ....+.. ......+.+++|+..++++++ +.|+.. +...+..
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~~~-~~~~~~~--~~~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLASS-NKEKYAS--EKAKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGTTT-CHHHHHH--HHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcccC-CHHHHHH--HHHHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence 88865553 444554444333 2223322 234456789999999999999 899544 4444443
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=1.3e-11 Score=116.54 Aligned_cols=163 Identities=11% Similarity=0.066 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 618 ITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLAC 697 (846)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 697 (846)
..|..++..+...|++++|+..++++.+. .+.+..++..++..+...|++++|...++++++..+. +...+..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34555566666666666666666666543 1224556666666666667777777777666665433 556666666667
Q ss_pred HhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHH
Q 003122 698 SLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKY 776 (846)
Q Consensus 698 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 776 (846)
...|++++|++.++++....|. +..++..++.++...|++++|...++++++ ..| +..++..++.+|...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALG--LRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777766655555 556677777777788888888888888877 566 455777777778888888888
Q ss_pred HHHHHHHHH
Q 003122 777 IEVLQWMED 785 (846)
Q Consensus 777 ~~~~~~~~~ 785 (846)
...++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877765
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=2.6e-11 Score=114.32 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 583 QVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAF 662 (846)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 662 (846)
..+..++..+...|++++|...++++.... +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666667777777777777666542 2346667777777777777777777777776631 23456666777777
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH
Q 003122 663 NKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM 742 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 742 (846)
...|++++|...++++.+..+. +...+..++.++...|++++|+..++++....|. +..++..++.++...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777777765543 5666777777777777777777777777666665 5677778888888888888888
Q ss_pred HHHHHHHhcCCCcC
Q 003122 743 KLFFKIVSSGAEAN 756 (846)
Q Consensus 743 ~~~~~~~~~g~~p~ 756 (846)
..++++++ ..|+
T Consensus 165 ~~~~~~~~--~~~~ 176 (186)
T 3as5_A 165 PHFKKANE--LDEG 176 (186)
T ss_dssp HHHHHHHH--HHHC
T ss_pred HHHHHHHH--cCCC
Confidence 88888877 5554
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.35 E-value=3.1e-11 Score=123.35 Aligned_cols=192 Identities=10% Similarity=-0.013 Sum_probs=127.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 003122 591 AYSKQGLIAEAESMFNMMKMS----GCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETN----NIEP-DSIACSALMR 660 (846)
Q Consensus 591 ~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~ 660 (846)
.|...|++++|...|++.... |-.++ ..+|+.++.+|...|++++|+..|++.++. |-.. -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666665542 21111 356677777777777777777777777652 1000 0346777788
Q ss_pred HHHhc-CChhHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccch------hhHHHH
Q 003122 661 AFNKG-GQPSKVLLVAEFMREQDITF-S----DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSI------GLLNQL 728 (846)
Q Consensus 661 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l 728 (846)
+|... |++++|+..|+++++..+.. + ..++..++.++...|++++|+..++++....|.... .+|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 88888888888888643221 1 345777888888888888888888888766554322 257788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 003122 729 LHLLGKSGRIESMMKLFFKIVSSGAEANFN------TYSILLKNLL--AAGNWRKYIEVLQWME 784 (846)
Q Consensus 729 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~ 784 (846)
+.++...|++++|+..|+++++ +.|+.. .+..++.+|. ..+++++|+..|+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 8889999999999999999998 888543 2344555554 4577888988887763
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.34 E-value=2.6e-11 Score=116.92 Aligned_cols=131 Identities=11% Similarity=-0.069 Sum_probs=97.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC-
Q 003122 658 LMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG- 736 (846)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 736 (846)
++.+|.+.|++++|+..|+++++.++. +...+..++.++...|++++|+..++++...+|. +..+|..++.+|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 777888888888888888888887665 6778888888888888888888888888887777 6778888888876665
Q ss_pred -CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 003122 737 -RIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGM 794 (846)
Q Consensus 737 -~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 794 (846)
+.+.+...+++++. ..|....+..++.++...|++++|+..|+++++ +.|+...
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~ 192 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEA 192 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHH
Confidence 44556666666654 444444666677778888888888888888876 5676543
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.34 E-value=3.6e-10 Score=120.30 Aligned_cols=271 Identities=7% Similarity=-0.037 Sum_probs=199.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHH
Q 003122 552 VLISSCCRLSRYSEALGFLDEMMDLKIPLTNQ----VYSSVISAYSKQGLIAEAESMFNMMKMSGC-SPD----VITYTA 622 (846)
Q Consensus 552 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~ 622 (846)
.....+...|++++|...+++.+......+.. ++..+...+...|++++|...+++...... ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455678899999999999998864223322 566778889999999999999998876210 122 234677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHH
Q 003122 623 MLHAYNTAEDWEKACALFLEMETN----NIE--PD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITF----SDSIFF 691 (846)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~----g~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~ 691 (846)
+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++.++..... ....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 888899999999999999998762 222 32 3466778889999999999999999998744321 234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCc--cchhhHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-----HHHH
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFHV--VSIGLLN----QLLHLLGKSGRIESMMKLFFKIVSSGAEAN-----FNTY 760 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~ 760 (846)
.++.++...|++++|...+++.....+. ....... ..+..+...|++++|...+++++. ..|. ...+
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK--PEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC--CCCTTCGGGHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC--CCCCcchhhHHHH
Confidence 8889999999999999999987543211 1111111 334557799999999999999987 4442 2256
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCH-HhHHHHHHHHHhcCCcchHHHHHHHHHHHhhc
Q 003122 761 SILLKNLLAAGNWRKYIEVLQWMEDAG----IQPSY-GMFRDIVSFAQTRGGAEYAAIIQERIESLRMK 824 (846)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~ 824 (846)
..++.++...|++++|...++++.+.. ..++. ..+..+...+...|+.++|...+++..++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 788889999999999999999886531 11122 24556677888899999999999988877654
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=2.3e-11 Score=123.70 Aligned_cols=201 Identities=10% Similarity=0.009 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCC
Q 003122 583 QVYSSVISAYSKQGLIAEAESMFNMMKMS------GCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETN------NIE 649 (846)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~ 649 (846)
.++..++..|...|++++|+..+++++.. +..|. ..++..++..|...|++++|+..++++++. ...
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444555555555555555555544432 11111 334555555555555555555555555431 001
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhccC-----
Q 003122 650 PD-SIACSALMRAFNKGGQPSKVLLVAEFMREQ-----DI-TF-SDSIFFEMVLACSLLRDWKTTIDLIKQMEPS----- 716 (846)
Q Consensus 650 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 716 (846)
|+ ..++..++..|...|++++|+.+++++++. +. .| ....+..++.++...|++++|+..++++...
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 11 334455555555555555555555555543 00 11 1234445555555555555555555544321
Q ss_pred ---CCccchhhHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 717 ---FHVVSIGLLNQLLHLLGKSGR------IESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 717 ---~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.......+|..+...+...+. +.++...++.+.. ..|+ ..++..++.+|...|++++|..+++++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 011122333344433333222 2333333322222 2332 33677777788888888888888877764
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=6.8e-11 Score=120.16 Aligned_cols=203 Identities=13% Similarity=0.105 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 003122 547 SVTYTVLISSCCRLSRYSEALGFLDEMMDL------K-IPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMS------GC 613 (846)
Q Consensus 547 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~ 613 (846)
..++..+...+...|++++|+..++++++. + .+....++..++.+|...|++++|...|+++... ..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445666777777777777777777776643 1 1223456777788888888888888888877653 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---
Q 003122 614 SP-DVITYTAMLHAYNTAEDWEKACALFLEMETN------NIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQD--- 682 (846)
Q Consensus 614 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 682 (846)
.| ...++..++..|...|++++|...++++.+. +..|+ ..++..++.+|...|++++|+.+++++++..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 12 2567788888888888888888888888763 11332 4577788888888899999988888887631
Q ss_pred ----CC-CCHHHHHHHHHHHHhcC------CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 683 ----IT-FSDSIFFEMVLACSLLR------DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 683 ----~~-~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
.. .....+..+...+...+ .+.++...++......+. ...++..++.+|...|++++|...++++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT-VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 12333444444444332 345555556655544444 567889999999999999999999999987
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=8.4e-11 Score=118.08 Aligned_cols=184 Identities=11% Similarity=0.080 Sum_probs=102.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 003122 580 LTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD---VITYTAMLHAYNTAEDWEKACALFLEMETNNI-EPD-SIA 654 (846)
Q Consensus 580 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~-~~~ 654 (846)
.+...+..++..+.+.|++++|+..|++++... +.+ ...+..++.+|.+.|++++|+..|+++++..- .|. ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 344555556666666666666666666666542 112 45566666666666666666666666666210 111 345
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHH
Q 003122 655 CSALMRAFNK--------GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLN 726 (846)
Q Consensus 655 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 726 (846)
+..++.++.. .|++++|+..|+++++..+. +......... +..+... ....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 5556666666 66777777777776665443 2211111100 0000000 011234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEAN----FNTYSILLKNLLAA----------GNWRKYIEVLQWMED 785 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 785 (846)
.++..|...|++++|+..|+++++ ..|+ ...+..++.+|... |++++|+..++++.+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFD--AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 666677777777777777777776 5554 22566666666655 666777777777766
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.28 E-value=1e-10 Score=119.54 Aligned_cols=213 Identities=10% Similarity=-0.025 Sum_probs=149.4
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 003122 527 EYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDL----KIPLT-NQVYSSVISAYSKQGLIAEA 601 (846)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A 601 (846)
++++|...|++. +..|...|++++|...|.++++. +.++. ..+|+.++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666654 23455667777777777766642 21111 35677778888888888888
Q ss_pred HHHHHHHHHcCC-CCC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCh
Q 003122 602 ESMFNMMKMSGC-SPD----VITYTAMLHAYNTA-EDWEKACALFLEMETNNIEPD-------SIACSALMRAFNKGGQP 668 (846)
Q Consensus 602 ~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~ 668 (846)
+..|++.+.... ..+ ..+++.++.+|... |++++|+..|++.++. .|+ ..++..++..+.+.|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 888877765210 011 35788888899886 9999999999998862 221 34678889999999999
Q ss_pred hHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccch----hhHHHHHHHHH--hcC
Q 003122 669 SKVLLVAEFMREQDITFSD------SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSI----GLLNQLLHLLG--KSG 736 (846)
Q Consensus 669 ~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~--~~g 736 (846)
++|+..|+++++..+.... ..+..++.++...|++++|+..+++.....|.... ..+..++..+. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 9999999999986654322 15678888999999999999999998877665321 13455666664 457
Q ss_pred CHHHHHHHHHHHHhcCCCcCHH
Q 003122 737 RIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 737 ~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
++++|+..|++++. ++|+..
T Consensus 255 ~~~~A~~~~~~~~~--l~~~~~ 274 (292)
T 1qqe_A 255 QLSEHCKEFDNFMR--LDKWKI 274 (292)
T ss_dssp THHHHHHHHTTSSC--CCHHHH
T ss_pred HHHHHHHHhccCCc--cHHHHH
Confidence 89999999999888 777543
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.27 E-value=1.8e-10 Score=115.73 Aligned_cols=169 Identities=10% Similarity=-0.077 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD----SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFE 692 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 692 (846)
...+..++..+.+.|++++|+..|+++++. .|+ ..++..++.+|.+.|++++|+..|+++++..+...
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~------ 86 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP------ 86 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc------
Confidence 444445555555555555555555555542 222 33445555555555555555555555555332100
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCcCH-H-----
Q 003122 693 MVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK--------SGRIESMMKLFFKIVSSGAEANF-N----- 758 (846)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~g~~p~~-~----- 758 (846)
....++..++.++.. .|++++|+..|+++++ ..|+. .
T Consensus 87 ---------------------------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 137 (261)
T 3qky_A 87 ---------------------------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDAT 137 (261)
T ss_dssp ---------------------------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred ---------------------------hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHH
Confidence 012334444444444 5555555555555555 44422 1
Q ss_pred ------------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhc----------CCcchHH
Q 003122 759 ------------TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS----YGMFRDIVSFAQTR----------GGAEYAA 812 (846)
Q Consensus 759 ------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~----------~~~~~a~ 812 (846)
.+..++..|.+.|++++|+..++++++. .|+ +..+..++..+... |+.++|.
T Consensus 138 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~ 215 (261)
T 3qky_A 138 QKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAV 215 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHH
Confidence 2377899999999999999999999884 454 23566666666654 7778898
Q ss_pred HHHHHHHHHhhc
Q 003122 813 IIQERIESLRMK 824 (846)
Q Consensus 813 ~~~~~l~~l~~~ 824 (846)
..++++.+..+.
T Consensus 216 ~~~~~~~~~~p~ 227 (261)
T 3qky_A 216 ELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHHCCC
Confidence 888887775543
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.26 E-value=1e-11 Score=112.47 Aligned_cols=142 Identities=11% Similarity=-0.020 Sum_probs=69.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRD 702 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 702 (846)
+..+...|++++|+..+++... ..|+ ...+..+...|.+.|++++|++.|+++++.++. +...+..++.++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 3344445555555555555543 2222 233445555555555555555555555555443 44555555555555555
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCcC-HHHHHHHHHHHHhcC
Q 003122 703 WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKL-FFKIVSSGAEAN-FNTYSILLKNLLAAG 771 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~g~~p~-~~~~~~l~~~~~~~g 771 (846)
+++|+..++++...+|. ++.+|..++.+|.+.|++++|.+. ++++++ +.|+ ..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 55555555555544444 444555555555555555444333 355555 5552 334444444444444
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.26 E-value=2.8e-10 Score=109.56 Aligned_cols=136 Identities=14% Similarity=0.003 Sum_probs=107.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 623 MLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR 701 (846)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 701 (846)
++.+|.+.|++++|+..|++.++ +.| +..++..++.++...|++++|+..|+++++.+|. +...+..++.+|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHh
Confidence 88899999999999999999998 445 4778899999999999999999999999998776 7888889998887665
Q ss_pred C--HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q 003122 702 D--WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLK 765 (846)
Q Consensus 702 ~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 765 (846)
+ .+.+...++++... .+....+..++.++...|++++|+..|+++++ +.|+......+..
T Consensus 137 ~~~~~~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 4 44556666666432 22334566778888889999999999999999 9998765555544
No 94
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.24 E-value=6.9e-10 Score=107.09 Aligned_cols=176 Identities=14% Similarity=0.006 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 003122 600 EAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGG----QPSKVLLVA 675 (846)
Q Consensus 600 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 675 (846)
+|.+.|++..+.| +...+..|...|...+++++|+..|++..+.| +..++..|...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777777643 67777777777777888888888888887754 55667777777766 5 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhccCCCc-cchhhHHHHHHHHHh----cCCHHHHHHHHH
Q 003122 676 EFMREQDITFSDSIFFEMVLACSL----LRDWKTTIDLIKQMEPSFHV-VSIGLLNQLLHLLGK----SGRIESMMKLFF 746 (846)
Q Consensus 676 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 746 (846)
+++.+.+ +...+..++.+|.. .+++++|+.++++....++. ..+.++..|+.+|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887755 56777778887776 77888888888888776652 135678889999988 789999999999
Q ss_pred HHHhcCCCcCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 003122 747 KIVSSGAEANFNTYSILLKNLLAA-G-----NWRKYIEVLQWMEDAG 787 (846)
Q Consensus 747 ~~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g 787 (846)
++.+ ..++..++..|+..|... | ++++|+.+|+++.+.|
T Consensus 154 ~A~~--~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSS--LSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHH--TSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHH--cCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9998 544666888888888764 4 8999999999998876
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.23 E-value=5.1e-10 Score=109.34 Aligned_cols=184 Identities=8% Similarity=-0.080 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HH
Q 003122 581 TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCS-PD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS----IA 654 (846)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~ 654 (846)
+...+..++..+.+.|++++|+..|++++..... |. ...+..++.+|.+.|++++|+..|+++++. .|+. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHH
Confidence 4455666777788888888888888888875211 11 356777888888888888888888888873 3432 24
Q ss_pred HHHHHHHHHh------------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 003122 655 CSALMRAFNK------------------GGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPS 716 (846)
Q Consensus 655 ~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 716 (846)
+..++.++.. .|++++|+..|+++++..|. +.........+. . +...
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----~------~~~~---- 145 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----F------LKDR---- 145 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----H------HHHH----
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----H------HHHH----
Confidence 5555555554 34555555555555554333 111111100000 0 0000
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003122 717 FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF----NTYSILLKNLLAAGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 717 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 787 (846)
.......++..|.+.|++++|+..|+++++ ..|+. .++..++.+|.+.|++++|+..++++...+
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 001124677888899999999999999998 77853 368888999999999999999999888753
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.22 E-value=7e-11 Score=135.71 Aligned_cols=173 Identities=14% Similarity=-0.020 Sum_probs=85.8
Q ss_pred HhcCCHhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 558 CRLSRYSEALGFLDEMM--------DLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT 629 (846)
Q Consensus 558 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (846)
...|++++|++.+++++ +. .+.+...+..++.+|...|++++|+..|+++++.. +.+...|..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 45556666666666555 22 13344555555555555555555555555555432 2234555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 630 AEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTID 708 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 708 (846)
.|++++|+..|+++++ +.| +...+..+..+|.+.|++++ ++.|+++++.++. +...+..++.++...|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555555 233 23445555555555555555 5555555554443 34444444555555555555555
Q ss_pred HHHhhccCCCccchhhHHHHHHHHHhcCC
Q 003122 709 LIKQMEPSFHVVSIGLLNQLLHLLGKSGR 737 (846)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 737 (846)
.++++...+|. +..+|..++.++...|+
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 55544444444 33444444444444333
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=5.2e-09 Score=105.49 Aligned_cols=219 Identities=9% Similarity=0.033 Sum_probs=165.3
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CC
Q 003122 562 RYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG--LIAEAESMFNMMKMSGCSPDVITYTAMLHAY----NTA---ED 632 (846)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~---g~ 632 (846)
..++|+.++++++..+ |.+..+|+.-..++...| ++++++..++.++... +.+..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 3457888888888764 556677777777777777 8888888888888753 33466676666555 444 67
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HH
Q 003122 633 WEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPS--KVLLVAEFMREQDITFSDSIFFEMVLACSLLRD------WK 704 (846)
Q Consensus 633 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 704 (846)
+++++.+++++.+.. +-+..+|..-..++.+.|.++ +++++++++++.++. +...|..-..++...|. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 888888888888742 346778888888888888888 888888888887776 77788777777777776 88
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcCC-HHHHHHHHHHHHhcC-CCc-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003122 705 TTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR-IESMMKLFFKIVSSG-AEA-NFNTYSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 705 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
++++.++++...+|. +..+|+.+..++.+.|+ .+++...+.++++.+ ..| +..++..++.+|.+.|+.++|+++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888888888887 77888888888888886 444556777776621 124 55688888888888899999999998
Q ss_pred HHHH
Q 003122 782 WMED 785 (846)
Q Consensus 782 ~~~~ 785 (846)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8865
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.21 E-value=2.7e-11 Score=109.66 Aligned_cols=144 Identities=6% Similarity=-0.049 Sum_probs=117.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 003122 658 LMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR 737 (846)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 737 (846)
|+..+...|++++|+..++++....+. +...+..++.+|...|++++|++.++++...+|. ++.+|..++.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 455667788999999999999875443 4556778999999999999999999999999988 78999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCC-HHhHHHHHHHHHhcCC
Q 003122 738 IESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEV-LQWMEDAGIQPS-YGMFRDIVSFAQTRGG 807 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~g~~p~-~~~~~~l~~~~~~~~~ 807 (846)
+++|+..|+++++ +.| +..+|..++.+|.+.|++++|.+. ++++.+ +.|+ +..+......+...|+
T Consensus 81 ~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999 999 466999999999999999887765 588887 5665 4455555555555553
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.16 E-value=1e-09 Score=126.00 Aligned_cols=189 Identities=9% Similarity=-0.006 Sum_probs=140.7
Q ss_pred HhcCCHHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 523 MNVGEYEKAIALYKCMK--------KRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSK 594 (846)
Q Consensus 523 ~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 594 (846)
...|++++|++.|++.. +.. +.+...+..+...+...|++++|+..++++++.+ +.+...+..++.+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67888888888888887 432 3355677788888888888888888888888764 5677888888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 003122 595 QGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 673 (846)
.|++++|+..|+++++.. +.+...|..++.+|.+.|++++ +..|+++++ +.| +..+|..+..++.+.|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888888753 2247788888888888888888 888888887 344 46678888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHhhccCCC
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRD--------WKTTIDLIKQMEPSFH 718 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~~ 718 (846)
.|+++++.++. +...+..++.++...++ +++|.+.+..+....+
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~ 607 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEP 607 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTST
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcH
Confidence 88888876554 45667777777755443 5555555555554333
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=3.2e-10 Score=105.93 Aligned_cols=155 Identities=10% Similarity=-0.025 Sum_probs=72.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhc
Q 003122 623 MLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA-CSLL 700 (846)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 700 (846)
+...+...|++++|+..|+++++ ..| +...+..+..++...|++++|+..++++.+..+ +...+...+.+ +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhh
Confidence 33344444455555555444443 122 233444444444555555555555544444322 22222111111 1111
Q ss_pred CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC---HHHHHHHHHHHHhcCCHHHHH
Q 003122 701 RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN---FNTYSILLKNLLAAGNWRKYI 777 (846)
Q Consensus 701 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~ 777 (846)
+...+|+..++++....|. +..++..++.++...|++++|+..|+++++ ..|+ ...+..++.+|...|+.++|+
T Consensus 88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILK--VNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1222344455555444444 445555566666666666666666666665 5543 235555555666666666666
Q ss_pred HHHHHHH
Q 003122 778 EVLQWME 784 (846)
Q Consensus 778 ~~~~~~~ 784 (846)
..|++++
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=1.3e-09 Score=96.27 Aligned_cols=127 Identities=16% Similarity=0.130 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK 734 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 734 (846)
|..++..+...|++++|+.+++++.+.++. +...+..++.++...|++++|+.+++++....|. +..++..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 444555555555555555555555554333 3445555555555556666666666555544444 44556667777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 735 SGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.|++++|.+.++++++ ..| +..++..++.+|...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777776 555 345666777777777777777777777665
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.13 E-value=9.3e-09 Score=103.68 Aligned_cols=218 Identities=8% Similarity=-0.023 Sum_probs=182.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH----Hhc-
Q 003122 595 QGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAE--DWEKACALFLEMETNNIEP-DSIACSALMRAF----NKG- 665 (846)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~----~~~- 665 (846)
....++|+.+++.++.. .|+ ...|+.-..++...| +++++++.++.++.. .| +..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhcc
Confidence 34457999999999986 455 788999999998888 999999999999984 44 456777666666 555
Q ss_pred --CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHhhccCCCccchhhHHHHHHHHHhcCC----
Q 003122 666 --GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWK--TTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR---- 737 (846)
Q Consensus 666 --g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 737 (846)
+++++++.+++++++.+++ +..+|..-..++...|.++ +++++++++...+|. +..+|+..+.++...|+
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 7899999999999998877 8899999999999999998 999999999999988 78899999999998887
Q ss_pred --HHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC-C-CCCHHhHHHHHHHHHhcCCcchH
Q 003122 738 --IESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRK-YIEVLQWMEDAG-I-QPSYGMFRDIVSFAQTRGGAEYA 811 (846)
Q Consensus 738 --~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g-~-~p~~~~~~~l~~~~~~~~~~~~a 811 (846)
++++++.+++++. ..| |..+|+.+...+.+.|+..+ +..+.+++.+.+ . ..++..+.-++..+...|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 9999999999999 899 67799999999999998555 555777665432 1 23556777788888889999999
Q ss_pred HHHHHHHHH
Q 003122 812 AIIQERIES 820 (846)
Q Consensus 812 ~~~~~~l~~ 820 (846)
.++++++.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999876
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.13 E-value=7.3e-10 Score=112.65 Aligned_cols=162 Identities=13% Similarity=0.035 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVL 695 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 695 (846)
...+..+...+...|++++|+..|+++.+ ..| +...+..++.++.+.|++++|+..++++....+. ..........
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHHHH
Confidence 34444445555555555555555555554 223 2444555555555555555555555555543331 1112222222
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC---HHHHHHHHHHHHhcCC
Q 003122 696 ACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN---FNTYSILLKNLLAAGN 772 (846)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~ 772 (846)
.+...++.++|+..++++....|. +..++..++.+|...|++++|++.|.++++ ..|+ ...+..|+.+|...|+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~--~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLR--XDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cccccccchHHHHHHHHHHHcCC
Confidence 344444555555555555555554 445555666666666666666666666666 5553 2355666666666666
Q ss_pred HHHHHHHHHHHH
Q 003122 773 WRKYIEVLQWME 784 (846)
Q Consensus 773 ~~~A~~~~~~~~ 784 (846)
.++|...+++.+
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 666666555543
No 104
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=1e-08 Score=102.03 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=35.0
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 531 AIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKI-PLTNQVYSSVISAYSKQGLIAEAESMFNMMK 609 (846)
Q Consensus 531 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 609 (846)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. ..+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 23333333444444445555555555554443321 1233444444444555555555555554444
Q ss_pred H
Q 003122 610 M 610 (846)
Q Consensus 610 ~ 610 (846)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 4
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=2.2e-09 Score=109.00 Aligned_cols=166 Identities=8% Similarity=-0.096 Sum_probs=141.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHH
Q 003122 649 EPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQL 728 (846)
Q Consensus 649 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 728 (846)
+.+...+..+...+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....|. ....+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHH
Confidence 334567788888999999999999999999998776 7888999999999999999999999999988885 44444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHh
Q 003122 729 LHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS---YGMFRDIVSFAQT 804 (846)
Q Consensus 729 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~ 804 (846)
+..+...++.++|++.++++++ ..| +...+..++.+|...|++++|+..++++++. .|+ ...+..++..+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 5567788899999999999999 899 4669999999999999999999999999984 454 4468888999999
Q ss_pred cCCcchHHHHHHHHHH
Q 003122 805 RGGAEYAAIIQERIES 820 (846)
Q Consensus 805 ~~~~~~a~~~~~~l~~ 820 (846)
.|+.+++...|++...
T Consensus 268 ~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 9999988888876543
No 106
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=1.1e-08 Score=101.77 Aligned_cols=245 Identities=8% Similarity=0.002 Sum_probs=133.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003122 523 MNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAE 602 (846)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 602 (846)
.-.|.+..++.-...+.. .........+.+++...|++... ..-.|....+..+...+ ..+ |+
T Consensus 24 fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 346677666663322221 11223333344666666665531 11223333433333332 221 56
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003122 603 SMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQ 681 (846)
Q Consensus 603 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (846)
..|++....+ .++..++..++.++...|++++|++++.+.+..+-.+ +...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666666543 3455555566677777777777777777776543212 3455666677777777777777777777664
Q ss_pred CC---CCCHHHHHHHHHH--HHhcC--CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Q 003122 682 DI---TFSDSIFFEMVLA--CSLLR--DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA- 753 (846)
Q Consensus 682 ~~---~~~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~- 753 (846)
.+ ..+..+...++.+ ....| ++++|..+|+++....|.. ..-..|..++...|++++|.+.++.+.+ .
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~--~~~~lLln~~~~~g~~~eAe~~L~~l~~--~~ 241 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTW--KTQLGLLNLHLQQRNIAEAQGIVELLLS--DY 241 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH--HHHHHHHHHHHHHTCHHHHHHHHHHHHS--HH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc--ccHHHHHHHHHHcCCHHHHHHHHHHHHH--hc
Confidence 32 0023444444433 33333 6777777777776555531 1111222266677777777777776655 3
Q ss_pred ---------CcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 754 ---------EANF-NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 754 ---------~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.|+. .+...++......|+ +|.++++++.+ ..|+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 2533 355566666555665 67777777776 455544
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.11 E-value=1e-09 Score=112.86 Aligned_cols=156 Identities=11% Similarity=0.024 Sum_probs=103.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---C--CHHHHHHHHH
Q 003122 626 AYNTAEDWEKACALFLEMETN----NIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDIT---F--SDSIFFEMVL 695 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~ 695 (846)
.|...|++++|...|.++.+. +-.+. ..+|..++.+|.+.|++++|+..|+++++.... + ...++..++.
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666665541 10001 335666677777777777777777777653111 1 1245667777
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCcc-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-------HHHHHHH
Q 003122 696 ACSLLRDWKTTIDLIKQMEPSFHVV-----SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-------FNTYSIL 763 (846)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l 763 (846)
+|.. |++++|+..++++....+.. ...+++.++.+|...|++++|+..|+++++ +.|+ ...+..+
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS--MYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHcCChhHHHHHHHHH
Confidence 7777 88888888887765433221 246788888889999999999999998887 5441 1256667
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003122 764 LKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~ 784 (846)
+.++...|++++|+..++++.
T Consensus 202 g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 777888899999999998886
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.10 E-value=1.2e-09 Score=101.91 Aligned_cols=160 Identities=11% Similarity=0.081 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH-H
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL-L 732 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 732 (846)
.+..+...+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....| ++..+..++.. +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 3556777889999999999999999987666 788899999999999999999999999988877 44444443333 2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCc
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS---YGMFRDIVSFAQTRGGA 808 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~~~~ 808 (846)
...+...+|+..++++++ ..| +...+..++.+|...|++++|+..++++++. .|+ ...+..++..+...|+.
T Consensus 85 ~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCC
Confidence 233344568999999999 899 4679999999999999999999999999874 454 44788889999999999
Q ss_pred chHHHHHHHHHH
Q 003122 809 EYAAIIQERIES 820 (846)
Q Consensus 809 ~~a~~~~~~l~~ 820 (846)
++|...|++...
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999886543
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.10 E-value=4.4e-09 Score=102.63 Aligned_cols=187 Identities=12% Similarity=0.057 Sum_probs=137.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---HH
Q 003122 546 DSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIP-L-TNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPD-V---IT 619 (846)
Q Consensus 546 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~ 619 (846)
+...+..+...+...|++++|+..|+++++.... + ....+..++.+|.+.|++++|+..|+++++.. |+ . ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 3455667778899999999999999999985321 1 24678889999999999999999999999863 43 2 35
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 620 YTAMLHAYNT------------------AEDWEKACALFLEMETNNIEPDS-IACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 620 ~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
+..++.++.. .|++++|+..|+++++ ..|+. .++..+.... .+....
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~----------~~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLV----------FLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHH----------HHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHH----------HHHHHH--
Confidence 6666666654 5789999999999998 34553 2222211100 000000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 681 QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS--IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 681 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
......++..|...|++++|+..++++....|... ..++..++.+|.+.|+.++|++.++++.. ..|+
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~--~~~~ 216 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA--NSSN 216 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--CCSC
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCC
Confidence 11234677888899999999999999888877632 36788999999999999999999999988 6664
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=2.8e-09 Score=94.04 Aligned_cols=132 Identities=15% Similarity=0.146 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 620 YTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL 699 (846)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 699 (846)
|..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++.+.++. +...+..++.++..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 4445555555555555555555555421 223445555555555566666666666666554433 44555556666666
Q ss_pred cCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 700 LRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
.|++++|+..++++....|. +..++..++.++...|++++|...++++++ ..|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HSTT
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc--cCCC
Confidence 66666666666665555444 445666777777777777777777777776 4553
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.07 E-value=1.4e-08 Score=97.80 Aligned_cols=176 Identities=9% Similarity=-0.030 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 003122 565 EALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAE----DWEKACALF 640 (846)
Q Consensus 565 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 640 (846)
+|...|++..+. .+...+..|...|...+++++|+..|++..+.| +...+..|...|.. + ++++|+.+|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 466677777765 366777777888888888888888888887754 66777777777777 6 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 003122 641 LEMETNNIEPDSIACSALMRAFNK----GGQPSKVLLVAEFMREQDIT-FSDSIFFEMVLACSL----LRDWKTTIDLIK 711 (846)
Q Consensus 641 ~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 711 (846)
++..+.| +..++..|...|.. .+++++|+.+|+++.+.++. .....+..++.+|.. .+++++|+.+++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887644 56677777777776 77888888888888876531 025677788888877 778888888888
Q ss_pred hhccCCCccchhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcC
Q 003122 712 QMEPSFHVVSIGLLNQLLHLLGKS-G-----RIESMMKLFFKIVSSG 752 (846)
Q Consensus 712 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g 752 (846)
+...... +..++..|+.+|... | ++++|...|+++.+.|
T Consensus 154 ~A~~~~~--~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLSR--TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTSC--TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCC--CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8866522 334677888888653 3 8999999999988843
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.06 E-value=7.3e-10 Score=99.51 Aligned_cols=103 Identities=5% Similarity=-0.080 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHH
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILL 764 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 764 (846)
+...+..++..+...|++++|+..++++...+|. ++.+|..++.+|...|++++|+..|+++++ +.| +...|..++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHH
Confidence 4556778888888889999999988888888887 778899999999999999999999999999 889 466899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 765 KNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 765 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.+|.+.|++++|+..|+++++ +.|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 999999999999999999987 456654
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.05 E-value=1.8e-09 Score=94.07 Aligned_cols=92 Identities=11% Similarity=-0.015 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHh
Q 003122 691 FEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLA 769 (846)
Q Consensus 691 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~ 769 (846)
...+..+.+.|++++|++.|+++....|. +..+|..++.+|...|++++|+..|+++++ +.|+ ..+|..++.+|..
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHH
Confidence 33344444444444444444444433333 344444455555555555555555555555 4442 3345555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 003122 770 AGNWRKYIEVLQWMED 785 (846)
Q Consensus 770 ~g~~~~A~~~~~~~~~ 785 (846)
.|++++|+..|+++++
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.05 E-value=2.2e-09 Score=121.27 Aligned_cols=163 Identities=9% Similarity=-0.038 Sum_probs=118.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHH
Q 003122 595 QGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLL 673 (846)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 673 (846)
.|++++|+..|+++.+.. +.+...|..++..|...|++++|.+.|++..+. .| +..++..++.+|...|++++|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478888999998888752 334788888888898899999999999998874 44 47788888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS---GRIESMMKLFFKIVS 750 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 750 (846)
.++++++.++. +...+..++.++...|++++|++.++++....|. +..++..++.++... |++++|.+.++++++
T Consensus 79 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999887655 6778888888999999999999999988877776 667888888888888 899999999999988
Q ss_pred cCCCcCHH-HHHHHH
Q 003122 751 SGAEANFN-TYSILL 764 (846)
Q Consensus 751 ~g~~p~~~-~~~~l~ 764 (846)
..|+.. .|..++
T Consensus 157 --~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 --QGVGAVEPFAFLS 169 (568)
T ss_dssp --HTCCCSCHHHHTT
T ss_pred --cCCcccChHHHhC
Confidence 777543 554444
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.02 E-value=3.4e-09 Score=109.02 Aligned_cols=199 Identities=7% Similarity=-0.005 Sum_probs=119.0
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHH
Q 003122 560 LSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMS----GCSPD-VITYTAMLHAYNTAEDWE 634 (846)
Q Consensus 560 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~ 634 (846)
.+++++|...|.++ +..|...|++++|...|.++... +-.+. ..+|+.++.+|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566666665544 33455666677776666665542 10001 346666677777777777
Q ss_pred HHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHH
Q 003122 635 KACALFLEMETNN--I-EPD--SIACSALMRAFNKGGQPSKVLLVAEFMREQDITF-----SDSIFFEMVLACSLLRDWK 704 (846)
Q Consensus 635 ~A~~~~~~~~~~g--~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 704 (846)
+|+..|++.++.- . .+. ..++..+..+|.. |++++|+..|+++++..... ...++..++.++...|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 7777777765420 0 111 3456667777766 77888877777777532211 1345667777788888888
Q ss_pred HHHHHHHhhccCCCcc-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH------HHHHHHHHHHHhcCCH
Q 003122 705 TTIDLIKQMEPSFHVV-----SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF------NTYSILLKNLLAAGNW 773 (846)
Q Consensus 705 ~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~ 773 (846)
+|+..++++....+.. ...++..++.++...|++++|...|++++ +.|+. .....++.+| ..|+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~p~~~~~~e~~~l~~l~~~~-~~~d~ 248 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY---SIPGFSGSEDCAALEDLLQAY-DEQDE 248 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSTTSTTSHHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh---CCCCCCCCHHHHHHHHHHHHH-HhcCH
Confidence 8888877765433221 12356677777778888888888888887 34421 1233344444 56665
Q ss_pred HHHHH
Q 003122 774 RKYIE 778 (846)
Q Consensus 774 ~~A~~ 778 (846)
+++..
T Consensus 249 ~~~~~ 253 (307)
T 2ifu_A 249 EQLLR 253 (307)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.02 E-value=8.7e-07 Score=96.81 Aligned_cols=124 Identities=14% Similarity=0.011 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNK-GGQPSKVLLVAEFMREQDITFSDSIFFEMVLAC 697 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 697 (846)
.|...+..+.+.+..+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+.+++..+. ++..+...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4445555555555666666666666 21 11233333322222112 22466666666666654332 334444445555
Q ss_pred HhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 698 SLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 698 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
...|+.+.|..+++++.. +..+|...+..-...|+.+.+..+++++.+
T Consensus 365 ~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556666666666666521 345555555555556666666666666553
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=4.3e-09 Score=118.82 Aligned_cols=164 Identities=11% Similarity=-0.033 Sum_probs=123.9
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 560 LSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACAL 639 (846)
Q Consensus 560 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 639 (846)
.|++++|+..++++++.. +.+...+..++..|...|++++|.+.|++.++.. +.+...|..++.+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999998764 5678889999999999999999999999999863 33588899999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHhhcc
Q 003122 640 FLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLL---RDWKTTIDLIKQMEP 715 (846)
Q Consensus 640 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 715 (846)
|++..+. .| +...+..+..+|.+.|++++|++.++++++.++. +...+..++.++... |++++|++.++++..
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999984 44 4778899999999999999999999999987765 678888999999999 999999999999988
Q ss_pred CCCccchhhHHHHH
Q 003122 716 SFHVVSIGLLNQLL 729 (846)
Q Consensus 716 ~~~~~~~~~~~~l~ 729 (846)
.+|. +...+..++
T Consensus 157 ~~p~-~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVG-AVEPFAFLS 169 (568)
T ss_dssp HTCC-CSCHHHHTT
T ss_pred cCCc-ccChHHHhC
Confidence 8876 444554444
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.00 E-value=5.1e-08 Score=99.44 Aligned_cols=160 Identities=11% Similarity=-0.070 Sum_probs=107.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-C----HHHHHHH
Q 003122 624 LHAYNTAEDWEKACALFLEMETNN-IEPDS----IACSALMRAFNKGGQPSKVLLVAEFMREQDITF-S----DSIFFEM 693 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l 693 (846)
+..+...|++++|..++++..+.. ..|+. ..+..++..+...|++++|+..++++++..... + ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455667777777777777776521 11221 123345556666677788888888777633221 1 2256777
Q ss_pred HHHHHhcCCHHHHHHHHHhhcc------CCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------C-HHHH
Q 003122 694 VLACSLLRDWKTTIDLIKQMEP------SFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA------N-FNTY 760 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p------~-~~~~ 760 (846)
+.+|...|++++|+..++++.. ........++..++.+|.+.|++++|...++++++ +.+ . ..+|
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~--~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE--ISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTBCTTHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHcCcHHHHHHHH
Confidence 7777777777777777776652 22222355788888999999999999999988886 432 1 3478
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 003122 761 SILLKNLLAAGN-WRKYIEVLQWMED 785 (846)
Q Consensus 761 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 785 (846)
..++.+|.+.|+ +++|++.++++.+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888888988884 6889888888764
No 119
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.99 E-value=1.8e-07 Score=94.75 Aligned_cols=225 Identities=9% Similarity=0.067 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--C
Q 003122 565 EALGFLDEMMDLKIPLTNQVYSSVISAYSKQGL----------IAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAE--D 632 (846)
Q Consensus 565 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~ 632 (846)
+|+.+.+.++..+ |.+..+|+.-..++...+. +++++.+++.++... +-+..+|+.-..++...+ .
T Consensus 48 eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 5566666666543 3344445444333333222 567777777777653 345777777777776666 3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------
Q 003122 633 WEKACALFLEMETNNIEPDSIACSALMRAFNKGGQ-PSKVLLVAEFMREQDITFSDSIFFEMVLACSLL----------- 700 (846)
Q Consensus 633 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 700 (846)
+++++.+++++.+.. +-|..+|+.-..++...|. ++++++.++++++.++. +...|+..+.++...
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccc
Confidence 778888888887742 3356677777777777777 47788888888877666 667776666665554
Q ss_pred ---CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q 003122 701 ---RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS-----------GRIESMMKLFFKIVSSGAEANFNTYSILLKN 766 (846)
Q Consensus 701 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 766 (846)
+.++++++.++++....|. +..+|+.+...+... +.++++++.++++++ ++||+ .|..+..+
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~ 279 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTII 279 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHH
Confidence 4577888888888777777 777887777776665 468889999999998 88876 34333332
Q ss_pred -----HHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHH
Q 003122 767 -----LLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIV 799 (846)
Q Consensus 767 -----~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 799 (846)
....|..+++...+.++.+ +.|- .+-|..+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHH
Confidence 2245777888888888876 4443 23455553
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.98 E-value=7.1e-08 Score=98.38 Aligned_cols=164 Identities=10% Similarity=-0.056 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CC--H
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS------IACSALMRAFNKGGQPSKVLLVAEFMREQDIT---FS--D 687 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~ 687 (846)
.+...+..+...|++++|.+.+++..+.... .. ..+..++..+...|++++|+..++++++.... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445566677778888888888777763211 11 22344555667778888888888888753221 11 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhc---cCCCc---cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-----
Q 003122 688 SIFFEMVLACSLLRDWKTTIDLIKQME---PSFHV---VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN----- 756 (846)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----- 756 (846)
.+++.++.+|...|++++|+..++++. ...+. ....+++.++.+|...|++++|...++++++ +.++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~--~~~~~~~~~ 233 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE--ISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTBCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH--HHHhcCcHH
Confidence 467788888888888888888888765 22222 1236889999999999999999999999987 4333
Q ss_pred --HHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 003122 757 --FNTYSILLKNLLAAGNWRKY-IEVLQWMED 785 (846)
Q Consensus 757 --~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 785 (846)
..+|..++.+|.+.|++++| ...++++.+
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45889999999999999999 777888754
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.97 E-value=7.6e-09 Score=89.99 Aligned_cols=115 Identities=8% Similarity=-0.016 Sum_probs=102.2
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHH
Q 003122 648 IEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLN 726 (846)
Q Consensus 648 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 726 (846)
+.|+ ...+...+..|.+.|++++|++.|+++++.++. +...+..++.++...|++++|+..++++...+|. +..+|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 5565 457888999999999999999999999998776 7889999999999999999999999999988888 788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKN 766 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 766 (846)
.++.+|...|++++|++.|+++++ +.|+ ..++..|..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQ--VDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHHh
Confidence 999999999999999999999999 9995 4566666543
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.97 E-value=1.7e-08 Score=97.38 Aligned_cols=129 Identities=11% Similarity=0.086 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 622 AMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR 701 (846)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 701 (846)
.++..+...|++++|+..|++++ .|+..++..++.+|...|++++|+..|+++++.++. +...+..++.++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcc
Confidence 33444444455555555554442 334444555555555555555555555555544332 3444444444555555
Q ss_pred CHHHHHHHHHhhccCCCc---------------cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 702 DWKTTIDLIKQMEPSFHV---------------VSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 702 ~~~~A~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
++++|+..++++....|. ....++..++.+|...|++++|.+.|+++++ +.|+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 555555554444433322 1235677777777777777777777777777 66754
No 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=5.1e-07 Score=98.65 Aligned_cols=377 Identities=9% Similarity=-0.038 Sum_probs=210.7
Q ss_pred hcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCC-HHHH
Q 003122 384 SHG-MSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGL-LAEA 461 (846)
Q Consensus 384 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A 461 (846)
+.| +++.|..+|+.+... -|. |+++.+..+|++.... .|+...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 445 367777777777652 122 8888888888888774 5688888887777666553 3556
Q ss_pred HHHHHHHHHC-CCC-CCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 462 VEVFREMEQD-GIE-PNIVSICTLLAACG----RCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALY 535 (846)
Q Consensus 462 ~~~~~~~~~~-g~~-~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 535 (846)
..+|+.++.. |.. .+...|...+..+. ..++.+.+..+|+.++......-...|......- +......+.+++
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHH
Confidence 6677776653 332 34555655555443 2355677777777777632111112222221111 111111122211
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CC-----HHHHHHHHHHH
Q 003122 536 KCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQ--GL-----IAEAESMFNMM 608 (846)
Q Consensus 536 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~-----~~~A~~~~~~~ 608 (846)
.+. .+.+..|..+++++...-...+...|...+..-... |- .+.+..+|+++
T Consensus 147 ~~~---------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 GDT---------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHH---------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHH---------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 111 112333444444333210011334454444432221 10 34566788887
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----
Q 003122 609 KMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS-IACSALMRAFNKGGQPSKVLLVAEFMREQD----- 682 (846)
Q Consensus 609 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 682 (846)
+.. ++.+...|...+..+.+.|+.++|..+|++++.. |.. ..|.. |......++. ++.+.+.-
T Consensus 206 l~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 206 LDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEA 274 (493)
T ss_dssp HHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----
T ss_pred HHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhcc
Confidence 775 2445777888888788888888888888888875 443 22222 2221112222 22222210
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC
Q 003122 683 -------ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG-RIESMMKLFFKIVSSGAE 754 (846)
Q Consensus 683 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~ 754 (846)
.......|...+..+.+.+..+.|..+++++ . .|..+..+|...+..-...| +.+.|..+|+.+++ ..
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~--~~ 350 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL--KH 350 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH--HC
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH--HC
Confidence 0001244566666666778888899999888 3 23335556655555544444 68899999999888 45
Q ss_pred cC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003122 755 AN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRGGAEYAAIIQERIES 820 (846)
Q Consensus 755 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~ 820 (846)
|+ ...|...+......|+.+.|..+|+++. .....+...+.+-...|+.+.+..++++...
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 64 3455566777778888888888888862 2455677777777778888888776665554
No 124
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.97 E-value=9.2e-08 Score=96.86 Aligned_cols=223 Identities=7% Similarity=-0.033 Sum_probs=174.8
Q ss_pred HhcCCH-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003122 593 SKQGLI-AEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAED----------WEKACALFLEMETNNIEPDSIACSALMR 660 (846)
Q Consensus 593 ~~~g~~-~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 660 (846)
.+.|.+ ++|+.+++.++.. .|+ ..+|+.-...+...+. +++++.+++.++.. -+-+..+|+.-..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-~PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 345555 4899999999985 454 6777766666554443 68999999999984 2346789998888
Q ss_pred HHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHhhccCCCccchhhHHHHHHHHHhc--
Q 003122 661 AFNKGGQ--PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRD-WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS-- 735 (846)
Q Consensus 661 ~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 735 (846)
++.+.|+ +++++.+++++++.++. +..+|..-..++...|. ++++++.++++...+|. +..+|+..+.++...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhh
Confidence 8888884 89999999999998877 88999999999999998 69999999999999988 889999999888776
Q ss_pred ------------CCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCC
Q 003122 736 ------------GRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAA-----------GNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 736 ------------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~ 791 (846)
+.++++.+.+.+++. ..| |..+|+.+...+.+. +.++++++.++++.+ +.||
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd 270 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPE 270 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTT
T ss_pred ccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcc
Confidence 568999999999999 999 666888887777766 568899999999998 6777
Q ss_pred HH-hHHHHHHH---HHhcCCcchHHHHHHHHHHHhhc
Q 003122 792 YG-MFRDIVSF---AQTRGGAEYAAIIQERIESLRMK 824 (846)
Q Consensus 792 ~~-~~~~l~~~---~~~~~~~~~a~~~~~~l~~l~~~ 824 (846)
.. ++..++.. +...+..++....+.++.++.+.
T Consensus 271 ~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 271 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 53 33333322 22355666777777777776543
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.97 E-value=4.1e-09 Score=94.60 Aligned_cols=107 Identities=8% Similarity=-0.013 Sum_probs=90.5
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHH
Q 003122 648 IEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLN 726 (846)
Q Consensus 648 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 726 (846)
+.|+ ...+..++..+.+.|++++|+..|+++++.+|. +...|..++.+|...|++++|+..++++....|. ++.+|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHH
Confidence 4454 446777888888889999999999988887766 7788888888899999999999999988888887 678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
.++.+|...|++++|+..|+++++ +.||..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 999999999999999999999999 788764
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.94 E-value=3.3e-08 Score=95.44 Aligned_cols=131 Identities=9% Similarity=-0.048 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
..+..++..+...|++++|+..|++++ .++...+..++.++...|++++|+..++++....|. +..+|..++.+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 345667788999999999999999884 457889999999999999999999999999888877 778999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcC-H----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEAN-F----------------NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p~-~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
...|++++|++.|+++++ ..|+ . .++..++.+|...|++++|+..++++.+ +.|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALI--QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHH--TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred HHcccHHHHHHHHHHHHH--hCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 999999999999999999 6662 3 6899999999999999999999999987 45544
No 127
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.93 E-value=2.4e-09 Score=96.28 Aligned_cols=108 Identities=7% Similarity=-0.005 Sum_probs=85.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003122 674 VAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA 753 (846)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 753 (846)
.|+++++..+. +...+..++..+...|++++|+..++++....|. +..+|..++.+|...|++++|+..|+++++ +
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l 84 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAV--M 84 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--c
Confidence 35555554433 4556677777888888888888888888777776 677888888888889999999999999988 8
Q ss_pred Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 754 EA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 754 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.| +...|..++.+|...|++++|+..|+++++
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88 456888888889999999999999888876
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.92 E-value=2.3e-07 Score=94.38 Aligned_cols=221 Identities=10% Similarity=0.009 Sum_probs=152.2
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHH
Q 003122 560 LSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQG-LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTA-E-DWEKA 636 (846)
Q Consensus 560 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-~~~~A 636 (846)
.+..++|++++++++..+ |.+..+|+.-..++...| .+++++.+++.++... +.+..+|+.-..++... + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 344567788888877764 556667777777777777 4888888888888753 34577777777777665 6 77888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------
Q 003122 637 CALFLEMETNNIEPDSIACSALMRAFNKGGQPS--------KVLLVAEFMREQDITFSDSIFFEMVLACSLLRD------ 702 (846)
Q Consensus 637 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 702 (846)
+++++++++.. +-|..+|+.-..++.+.|.++ ++++.++++++.++. +...|+....++...+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 88888887642 335667777666666666666 788888888887766 77777777777777765
Q ss_pred -HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC----C-CcC
Q 003122 703 -WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRI--------------------ESMMKLFFKIVSSG----A-EAN 756 (846)
Q Consensus 703 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~g----~-~p~ 756 (846)
++++++.++++....|. +..+|+.+...+.+.|+- ........+++..+ . .+.
T Consensus 223 ~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 67888888888777777 777888877777776643 23333333333211 1 124
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 757 FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 757 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
......|+.+|.+.|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 55777888888888988899998888764
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.91 E-value=2.9e-08 Score=97.41 Aligned_cols=190 Identities=9% Similarity=-0.008 Sum_probs=142.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------
Q 003122 594 KQGLIAEAESMFNMMKMSGCSPD-VITYTAM-------LHAYNTAEDWEKACALFLEMETNNIEPD-------------- 651 (846)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------------- 651 (846)
..++.+.|.+.|.++... .|+ ...|..+ ...+...++..+++..+.+.++ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 578888888888888885 354 7788877 5666666666666666666654 2221
Q ss_pred --------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc-ch
Q 003122 652 --------SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV-SI 722 (846)
Q Consensus 652 --------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~ 722 (846)
......+...+...|++++|.++|+.+...++ +....+.++.++.+.++|++|+..++......+.. ..
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~ 171 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG 171 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence 23445567788899999999999998887554 33377788889999999999999998765443221 23
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-F-NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
.++..++.++...|++++|+..|+++.....+|. . .....++.++.++|+.++|...|+++.. ..|+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~ 240 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE 240 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc
Confidence 4788999999999999999999999986322264 3 3778889999999999999999999987 4566
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.91 E-value=2.6e-08 Score=91.61 Aligned_cols=126 Identities=6% Similarity=-0.042 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
.+..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....|. +..+|..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 3444555555555666666655555554433 3444555555555555555555555555444443 3445555556666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc-CHHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEA-NFNTYSIL--LKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 783 (846)
..|++++|...|+++++ ..| +...+..+ +..+.+.|++++|+..+++.
T Consensus 93 ~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666665 455 22333222 22255555555555555544
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.90 E-value=2.2e-07 Score=94.52 Aligned_cols=222 Identities=10% Similarity=-0.019 Sum_probs=174.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-Chh
Q 003122 593 SKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAE-DWEKACALFLEMETNNIEPDSIACSALMRAFNKG-G-QPS 669 (846)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g-~~~ 669 (846)
...+..++|++++++++... +-+..+|+.-...+...| .+++++.+++.++... +-+..+|+.-..++.+. + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 33455678999999999863 334788999888888888 5999999999999842 34577899888888877 7 899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHhhccCCCccchhhHHHHHHHHHhcCC----
Q 003122 670 KVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWK--------TTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR---- 737 (846)
Q Consensus 670 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 737 (846)
+++++++++++.+++ +..+|..-..++...|.++ ++++.++++...+|. +..+|+..+.++...++
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 999999999998877 8888888888888777777 999999999999888 88999999999999886
Q ss_pred ---HHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC----C-
Q 003122 738 ---IESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNW--------------------RKYIEVLQWMEDAG----I- 788 (846)
Q Consensus 738 ---~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~g----~- 788 (846)
++++++.+++++. ..| |..+|+.+...+.+.|+. .+..+....+...+ .
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 7999999999999 899 667999888888887764 22333333332211 0
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003122 789 QPSYGMFRDIVSFAQTRGGAEYAAIIQERIES 820 (846)
Q Consensus 789 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~l~~ 820 (846)
.+++....-++..+...++.++|.++++.+.+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 23455667778888888988999999988764
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.89 E-value=2e-07 Score=95.04 Aligned_cols=174 Identities=7% Similarity=-0.026 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCc-----cchh
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSD-----SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHV-----VSIG 723 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ 723 (846)
.+...+..+...|++++|++.+++.++....... ..+..++..+...|++++|+..++++....+. ....
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4556677889999999999999999986443211 23456777888999999999999987643221 1255
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CC-H
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSS-GAEAN-----FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ----PS-Y 792 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~----p~-~ 792 (846)
+|+.++..|...|++++|...|+++++. ...|+ ..+|..++.+|...|++++|+..++++++.... .. .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8999999999999999999999999831 02332 258899999999999999999999998763211 11 4
Q ss_pred HhHHHHHHHHHhcCCcchH-HHHHHHHHHHhhccCC
Q 003122 793 GMFRDIVSFAQTRGGAEYA-AIIQERIESLRMKSGD 827 (846)
Q Consensus 793 ~~~~~l~~~~~~~~~~~~a-~~~~~~l~~l~~~~~~ 827 (846)
.++..++..+...|+.++| ...+++...+.+....
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 4678889999999999999 8888888887766654
No 133
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.88 E-value=1.5e-08 Score=88.39 Aligned_cols=104 Identities=7% Similarity=-0.053 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH--------HHH
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF--------NTY 760 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--------~~~ 760 (846)
.+..++..+...|++++|+..|+++...+|. +..+|..++.+|...|++++|++.++++++ +.|+. .+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHHH
Confidence 4456667777777777777777777666666 667788888888888888888888888887 66632 267
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 003122 761 SILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRD 797 (846)
Q Consensus 761 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 797 (846)
..++.+|...|++++|++.|++.++ ..|++.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 7788888889999999999988876 4566654443
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=1.5e-08 Score=94.58 Aligned_cols=120 Identities=12% Similarity=0.081 Sum_probs=88.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH-HHhcCCH--H
Q 003122 663 NKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL-LGKSGRI--E 739 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 739 (846)
...|++++|+..++++++..+. +...+..++.+|...|++++|+..++++....|. +..++..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 3457777777777777776554 5677777777777788888888887777766665 56677778877 6677887 8
Q ss_pred HHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 740 SMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 740 ~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
+|...++++++ ..|+ ...+..++.+|...|++++|+..++++.+.
T Consensus 99 ~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALA--LDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888888 7774 557778888888888888888888888773
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.87 E-value=9.5e-09 Score=103.93 Aligned_cols=191 Identities=11% Similarity=-0.028 Sum_probs=128.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 003122 580 LTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSAL 658 (846)
Q Consensus 580 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l 658 (846)
.+...+..++..+...|++++|+..|++++... +.+...|..++.+|...|++++|+..++++++. .| +...+..+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 78 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 345667777888888888888888888888753 235788888888888888888888888888873 44 46678888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 003122 659 MRAFNKGGQPSKVLLVAEFMREQDITF----SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK 734 (846)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 734 (846)
+.+|...|++++|+..|+++++.++.. ....+..+ .......+.. ......+. +..+...++..+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~-~~~i~~~l~~l~-- 147 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS------IEERRIHQ-ESELHSYLTRLI-- 147 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH------HHHTCCCC-CCHHHHHHHHHH--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH------HHHHHHhh-hHHHHHHHHHHH--
Confidence 888888889999988888888754321 11111111 1112222222 11112222 333444444433
Q ss_pred cCCHHHHHHHHHHHHhcCCCcCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 003122 735 SGRIESMMKLFFKIVSSGAEANFN-TYSILLKNLLAA-GNWRKYIEVLQWMEDA 786 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 786 (846)
.|++++|++.++++++ +.|+.. ....+...+.+. +.+++|.++|+++.+.
T Consensus 148 ~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6899999999999998 888654 555555556665 7788999999887653
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.85 E-value=3.9e-08 Score=86.37 Aligned_cols=116 Identities=6% Similarity=-0.004 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
...+..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....|. +..++..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 445666666666677777777777766665443 4556666666666666666666666666655554 55666677777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcC
Q 003122 732 LGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAG 771 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 771 (846)
+...|++++|++.|+++++ ..|+ ...+..++.++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD--LDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhc
Confidence 7777777777777777776 6663 346666666666555
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.85 E-value=2.7e-08 Score=97.70 Aligned_cols=204 Identities=8% Similarity=-0.002 Sum_probs=158.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH-------HHHHHhcCChhHHHHHHHHHHHCCCC-----CC------
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPD-SIACSAL-------MRAFNKGGQPSKVLLVAEFMREQDIT-----FS------ 686 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~------ 686 (846)
++ ..++..+|.+.|.++.. ..|+ ...|..+ ..++...++..+++..+...++..+. .+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~--~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITN--YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYG 92 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTC
T ss_pred cc-cCCCHHHHHHHHHHHHH--hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccc
Confidence 44 57999999999999998 5665 6789888 57777777888888888877763211 01
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cC
Q 003122 687 ---------DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAE-AN 756 (846)
Q Consensus 687 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~ 756 (846)
.......+.++...|++++|.++|+.+....|. .. ....++..+.+.|++++|+..|+++.. .. |.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~--~~d~~ 168 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGK--WPDKF 168 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGG--CSCHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhc--cCCcc
Confidence 334556778899999999999999999888876 44 777888999999999999999998776 32 21
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCcchHHHHHHHHHHHhhc------cC
Q 003122 757 --FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS--YGMFRDIVSFAQTRGGAEYAAIIQERIESLRMK------SG 826 (846)
Q Consensus 757 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~------~~ 826 (846)
..+++.++.++...|++++|+..|+++......|. .......+..+.+.|+.++|...++++....+. +.
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL~ 248 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHh
Confidence 34789999999999999999999999986433254 335677788899999999999999999876554 33
Q ss_pred CCCCCCCccC
Q 003122 827 DPSFDQQSTS 836 (846)
Q Consensus 827 ~~~~~~~~~~ 836 (846)
...|.+.+++
T Consensus 249 ~~~~~~~~t~ 258 (282)
T 4f3v_A 249 DPSYRLKTTT 258 (282)
T ss_dssp CTTCCCCCCC
T ss_pred CCCCCCCCCc
Confidence 4555554443
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=5.5e-07 Score=91.73 Aligned_cols=174 Identities=7% Similarity=-0.056 Sum_probs=133.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc-c----hhhHH
Q 003122 657 ALMRAFNKGGQPSKVLLVAEFMREQDIT-FSD----SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV-S----IGLLN 726 (846)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~ 726 (846)
..+..+...|++++|..+++++.+.... ++. ..+..++..+...|++++|+..++++....+.. + ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788999999999999999974432 121 133357778888899999999999987532221 1 34799
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-HHhH
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSS-----GAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAG----IQPS-YGMF 795 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p~-~~~~ 795 (846)
.++.+|...|++++|...|+++++. +..+. ..+|..++.+|.+.|++++|+..++++++.. ..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999999841 12233 2389999999999999999999999987631 2222 4478
Q ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHhhccCCCCC
Q 003122 796 RDIVSFAQTRGG-AEYAAIIQERIESLRMKSGDPSF 830 (846)
Q Consensus 796 ~~l~~~~~~~~~-~~~a~~~~~~l~~l~~~~~~~~~ 830 (846)
..++..+...|+ .++|...+++...+.+......+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~ 275 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGG
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHH
Confidence 888999999995 59999999999998877765443
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.82 E-value=4.2e-08 Score=101.96 Aligned_cols=130 Identities=11% Similarity=-0.074 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCC
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFS--------------DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH 718 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 718 (846)
..+..+...|.+.|++++|+..|+++++..+... ...+..++.+|...|++++|+..++++....|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455555555556666666666666555443321 46677777777777888888877777777776
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 003122 719 VVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKY-IEVLQWMED 785 (846)
Q Consensus 719 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 785 (846)
. +..+|..++.+|...|++++|+..|+++++ +.| +..++..++.++...|++++| ...+++|..
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 667788888888888888888888888888 788 455788888888888888888 446666643
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.81 E-value=1e-08 Score=91.56 Aligned_cols=97 Identities=7% Similarity=-0.053 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHH
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILL 764 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 764 (846)
+...+..++..+...|++++|+..++++...+|. +..+|..++.+|...|++++|+..|+++++ +.| +...|..++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGAL--MDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHH
Confidence 3445566777777777788888777777777776 667788888888888888888888888888 778 455788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 003122 765 KNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 765 ~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+|...|++++|+..++++++
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888876
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.81 E-value=1.4e-08 Score=91.29 Aligned_cols=113 Identities=12% Similarity=0.008 Sum_probs=88.4
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 003122 639 LFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSF 717 (846)
Q Consensus 639 ~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 717 (846)
.|++++. +.|+ ...+..++..+...|++++|+..|+++++.++. +...+..++.++...|++++|+..++++....
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444544 3443 446667777888888888888888888887665 67778888888888888888888888887777
Q ss_pred CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 718 HVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 718 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
|. ++.++..++.+|...|++++|++.|+++++ +.|+.
T Consensus 86 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 122 (148)
T 2vgx_A 86 IX-EPRFPFHAAECLLQXGELAEAESGLFLAQE--LIANX 122 (148)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTC
T ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 76 667888899999999999999999999988 76753
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=6.4e-08 Score=84.59 Aligned_cols=117 Identities=10% Similarity=-0.089 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
..+..++..+...|++++|+..++++++..+. +...+..++.++...|++++|+..++++....|. +..++..++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHH
Confidence 34555555555666666666666666554433 4455555555555555555555555555544444 445566666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCH
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNW 773 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 773 (846)
...|++++|...++++++ ..| +...+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALE--LDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHHhcC
Confidence 666666666666666666 555 344566666666665553
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.79 E-value=1.5e-07 Score=86.43 Aligned_cols=136 Identities=9% Similarity=-0.050 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHH
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLK 765 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 765 (846)
...+..++..+...|++++|+..++++....|. +..++..++.++...|++++|...++++++ ..| +..+|..++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence 456778889999999999999999999888877 678999999999999999999999999999 788 5668999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HHhH--HHHHHHHHhcCCcchHHHHHHHHHHHhhccCC
Q 003122 766 NLLAAGNWRKYIEVLQWMEDAGIQPS-YGMF--RDIVSFAQTRGGAEYAAIIQERIESLRMKSGD 827 (846)
Q Consensus 766 ~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~--~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~~~ 827 (846)
+|...|++++|+..++++.+. .|+ ...+ ...+..+...|++++|...+++..++......
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 152 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 152 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcccch
Confidence 999999999999999999884 443 3344 33344467788999999999999888766544
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.79 E-value=3e-08 Score=100.18 Aligned_cols=218 Identities=11% Similarity=-0.034 Sum_probs=139.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003122 616 DVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMV 694 (846)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 694 (846)
+...+..++..+...|++++|+..|+++++. .| +...|..++.+|.+.|++++|+..++++++.++. +...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4677888999999999999999999999984 45 6788999999999999999999999999997765 778899999
Q ss_pred HHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHH
Q 003122 695 LACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWR 774 (846)
Q Consensus 695 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 774 (846)
.++...|++++|+..++++....|.. ...+...+....+ ..++......... -..++......+...+ .|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQ-RLNFGDDIPSALR---IAKKKRWNSIEER-RIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT-TCCCCSHHHHHHH---HHHHHHHHHHHHT-CCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccc-hhhHHHHHHHHHH---HHHHHHHHHHHHH-HHhhhHHHHHHHHHHH--HHHHH
Confidence 99999999999999999886655532 1111112222211 1122222222222 1233444555454433 69999
Q ss_pred HHHHHHHHHHHCCCCCCHHh-HHHHHHHHHhc-CCcchHHHHHHHHHHHhhccCC--CCCCCCccCCCccceecc
Q 003122 775 KYIEVLQWMEDAGIQPSYGM-FRDIVSFAQTR-GGAEYAAIIQERIESLRMKSGD--PSFDQQSTSSSSSIVTVD 845 (846)
Q Consensus 775 ~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~-~~~~~a~~~~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~ 845 (846)
+|++.++++.+ ..|+... ...+...+... +..+++..+++++.+-...... .-.+|++..-..-+|..+
T Consensus 153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~c~i~~~~~~dPv~~~ 225 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITP 225 (281)
T ss_dssp HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTBCTTTCSBCSSEEECS
T ss_pred HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccCCcCcCCHhcCCeECC
Confidence 99999998876 4565543 33333333332 3344555555444332222111 112355555555555543
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=1.4e-07 Score=81.53 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
.+..++..+...|++++|+..++++++..+. +...+..++.++...|++++|+.+++++....|. +..++..++.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 3444444444444444444444444443322 3333444444444444444444444444333333 3344445555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHH
Q 003122 734 KSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLL 768 (846)
Q Consensus 734 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 768 (846)
..|++++|...++++++ ..| +...+..++.++.
T Consensus 89 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE--LDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH
Confidence 55555555555555555 444 2334444444443
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.76 E-value=6.7e-08 Score=92.28 Aligned_cols=96 Identities=6% Similarity=-0.015 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccC------CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CcC--HH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPS------FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA---EAN--FN 758 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p~--~~ 758 (846)
+..++.++...|++++|+..+++.... .+.....++..++..+...|++++|...++++++... .+. ..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 334444444444444444444443221 1111344577888888888888888888888875211 111 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 759 TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 759 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++..++.+|...|++++|...++++.+
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 567788889999999999988888765
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.2e-07 Score=82.44 Aligned_cols=95 Identities=12% Similarity=0.021 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHH
Q 003122 688 SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKN 766 (846)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 766 (846)
..+...+..+...|++++|+..++++....|. +..+|..++.+|...|++++|+..++++++ +.|+ ..+|..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 44556666666777777777777766666665 566777788888888888888888888887 7773 5577777888
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003122 767 LLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~ 785 (846)
|...|++++|+..++++.+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 8888888888888887766
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.75 E-value=8.3e-09 Score=98.35 Aligned_cols=152 Identities=11% Similarity=-0.037 Sum_probs=82.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---------------HHHHHHH
Q 003122 629 TAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFS---------------DSIFFEM 693 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l 693 (846)
..|++++|.+.|+...+. .......+..++..+...|++++|+..|+++++..+... ...+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 344555555444432221 011233455566666677777777777777776433311 1455666
Q ss_pred HHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCC
Q 003122 694 VLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGN 772 (846)
Q Consensus 694 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 772 (846)
+.++...|++++|+..++++....|. +..++..++.+|...|++++|+..|+++++ +.| +..++..++.++...|+
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHHH
Confidence 66666667777777666666665555 556666777777777777777777777777 666 34466666666666666
Q ss_pred HHHHH-HHHHHHH
Q 003122 773 WRKYI-EVLQWME 784 (846)
Q Consensus 773 ~~~A~-~~~~~~~ 784 (846)
.+++. ..+++|.
T Consensus 172 ~~~~~~~~~~~~f 184 (198)
T 2fbn_A 172 ARKKDKLTFGGMF 184 (198)
T ss_dssp HHC----------
T ss_pred HHHHHHHHHHHHh
Confidence 66555 3444443
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.75 E-value=1e-07 Score=82.97 Aligned_cols=105 Identities=10% Similarity=-0.003 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc------chhhHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV------SIGLLNQ 727 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~ 727 (846)
++..++..+.+.|++++|+..|+++++.+|. +...+..++.+|...|++++|++.++++....|.. ...+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444555555555555555555555554433 44455555555555555555555555543332221 1235778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHH
Q 003122 728 LLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYS 761 (846)
Q Consensus 728 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 761 (846)
++.++...|++++|++.|+++++ ..||+....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHH
Confidence 88888899999999999999988 777765443
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=3.7e-08 Score=91.82 Aligned_cols=124 Identities=11% Similarity=0.003 Sum_probs=77.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 003122 629 TAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA-CSLLRDW--KT 705 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 705 (846)
..|++++|+..+++.++.. +.+...|..++.+|...|++++|+..|+++++.++. +...+..++.+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 3456666666666666531 224556666666666666666666666666665443 45556666666 5566666 77
Q ss_pred HHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 706 TIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 706 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
|+..++++....|. +..++..++.+|...|++++|...|+++++ ..|+.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 148 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD--LNSPR 148 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCCTT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh--hCCCC
Confidence 77777666666665 556677777777777888888888888777 66643
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.1e-07 Score=82.65 Aligned_cols=98 Identities=5% Similarity=-0.122 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
..+..++..+.+.|++++|+..|+++++.++. +...+..++.++...|++++|+..++++....|. +..+|..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 45666667777777777777777777776554 5677777777777778888888777777777776 567788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC
Q 003122 733 GKSGRIESMMKLFFKIVSSGAE 754 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~ 754 (846)
...|++++|+..|+++++ +.
T Consensus 83 ~~~~~~~~A~~~~~~al~--~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAART--KD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HH
T ss_pred HHHhCHHHHHHHHHHHHH--hC
Confidence 888888888888888888 77
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.71 E-value=1.3e-07 Score=98.31 Aligned_cols=130 Identities=11% Similarity=-0.028 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD----------------SIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
...|..++..|.+.|++++|+..|+++++. .|+ ..+|..+..+|.+.|++++|+..++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666667777777777777777777663 333 36788888888899999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 003122 681 QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESM-MKLFFKIVS 750 (846)
Q Consensus 681 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 750 (846)
..+. +...+..++.+|...|++++|+..++++....|. +..++..++.++...|+.++| ...|++++.
T Consensus 225 ~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765 7788888899999999999999999998888887 677888999999999998888 557777765
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.70 E-value=1.7e-07 Score=89.38 Aligned_cols=139 Identities=12% Similarity=0.026 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccC-----CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---Cc-C-
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPS-----FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGA---EA-N- 756 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~p-~- 756 (846)
...+..++.++...|++++|+..++++... .+.....++..++..|...|++++|.+.++++++ + .+ +
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~ 103 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERE--LLASLPEDP 103 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHSCCCH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHcCccH
Confidence 334444444555555555555544444320 1112456788999999999999999999999987 4 22 2
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHH----hHHHHHHHHHhcCCcchHHHHHHHHHHHhhccCC
Q 003122 757 ---FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PSYG----MFRDIVSFAQTRGGAEYAAIIQERIESLRMKSGD 827 (846)
Q Consensus 757 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~----~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~~~ 827 (846)
..++..++.+|...|++++|+..++++.+..-. .++. .+..++..+...|+.++|...+++..++.++..+
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 182 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED 182 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 237888899999999999999999998753111 2222 3567788889999999999999999988777654
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.68 E-value=7.5e-08 Score=82.93 Aligned_cols=94 Identities=7% Similarity=-0.136 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHH
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNL 767 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 767 (846)
.+..++..+...|++++|+..++++....|. +..+|..++.++...|++++|+..|+++++ +.| +...+..++.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3456677777788888888888887777776 677788888888888888888888888888 788 455788888888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003122 768 LAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 768 ~~~g~~~~A~~~~~~~~~ 785 (846)
...|++++|+..++++++
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888888765
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=4.7e-07 Score=78.88 Aligned_cols=118 Identities=5% Similarity=-0.042 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHH
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILL 764 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 764 (846)
+...+..++..+...|++++|+..++++....|. +..++..++.++...|++++|...++++++ ..|+ ...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHh--cCccCHHHHHHHH
Confidence 4567788899999999999999999999888776 678899999999999999999999999999 7884 66899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCc
Q 003122 765 KNLLAAGNWRKYIEVLQWMEDAGIQP-SYGMFRDIVSFAQTRGGA 808 (846)
Q Consensus 765 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~ 808 (846)
.+|...|++++|+..++++.+. .| +...+..++..+...|+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999884 44 455666666666665554
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=1.4e-07 Score=84.05 Aligned_cols=103 Identities=9% Similarity=-0.079 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
...+..+...+.+.|++++|+..|++++..++. +...+..++.++...|++++|+..++++....|. ++.++..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 345566677777788888888888888776655 6677777788888888888888888887777776 66777888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 732 LGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
|...|++++|++.|+++++ +.|+..
T Consensus 96 ~~~~g~~~~A~~~~~~al~--~~p~~~ 120 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA--LAAAQP 120 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HHHTCG
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCc
Confidence 8888888888888888888 777443
No 157
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.65 E-value=3.5e-07 Score=80.17 Aligned_cols=117 Identities=11% Similarity=-0.009 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
...|..++..+...|++++|+..|+++.+.. +.+..++..++.++...|++++|+..++++++..+. +...+..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 4445555555555555555555555555421 123445555555555555555555555555554433 44555555555
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG 736 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 736 (846)
+...|++++|+..++++....|. +..++..++.++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 55556666666555555544444 3445555555554443
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=5.4e-07 Score=76.85 Aligned_cols=91 Identities=10% Similarity=-0.098 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhc
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAA 770 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 770 (846)
.++..+...|++++|+..++++....|. +..++..++.++...|++++|...++++++ ..| +...+..++.+|...
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHH
Confidence 3333333344444444444433333332 233444444444444444444444444444 334 233444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 003122 771 GNWRKYIEVLQWMED 785 (846)
Q Consensus 771 g~~~~A~~~~~~~~~ 785 (846)
|++++|...++++.+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444443
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.64 E-value=2.5e-07 Score=84.84 Aligned_cols=93 Identities=13% Similarity=0.010 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLL 768 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~ 768 (846)
+..++..+...|++++|+..++++....|. +..+|..++.+|...|++++|+..|+++++ +.|+ ...|..++.+|.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 334444444444444444444444444333 334444555555555555555555555555 4442 334555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003122 769 AAGNWRKYIEVLQWMED 785 (846)
Q Consensus 769 ~~g~~~~A~~~~~~~~~ 785 (846)
..|++++|+..|+++++
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555544
No 160
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=7.3e-07 Score=76.88 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 583 QVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAF 662 (846)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 662 (846)
..+..++..+...|++++|...|+++.... +.+..++..++..+...|++++|...++++.+.. +.+..++..+..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444555555555555555555554431 2234444445555555555555555555544421 12334444444444
Q ss_pred HhcCChhHHHHHHHHHHHC
Q 003122 663 NKGGQPSKVLLVAEFMREQ 681 (846)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~ 681 (846)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555544443
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.61 E-value=1.8e-07 Score=80.49 Aligned_cols=99 Identities=7% Similarity=-0.057 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK 734 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 734 (846)
+..++..+.+.|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....|. +..++..++.+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 445666777788888888888888876655 6777777888888888888888888888777776 66778888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCcCH
Q 003122 735 SGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
.|++++|+..++++++ ..|+.
T Consensus 98 ~g~~~~A~~~~~~al~--~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLL--SQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHH--hCcCC
Confidence 8888888888888888 77753
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.61 E-value=3.1e-07 Score=84.16 Aligned_cols=104 Identities=11% Similarity=-0.135 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHH
Q 003122 651 DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLH 730 (846)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 730 (846)
+...+..+...+.+.|++++|+..|+++++..+. +...+..++.+|...|++++|+..++++....|. +..+|..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4667888999999999999999999999998766 7889999999999999999999999999988888 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 731 LLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 731 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
+|...|++++|+..|+++++ +.|+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~--~~p~~~ 113 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE--AEGNGG 113 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHSSSC
T ss_pred HHHHccCHHHHHHHHHHHHH--hCCCch
Confidence 99999999999999999999 888543
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.61 E-value=3.5e-07 Score=80.82 Aligned_cols=95 Identities=9% Similarity=-0.069 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHH
Q 003122 688 SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKN 766 (846)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 766 (846)
..+..++..+...|++++|+..++++....|. +..+|..++.++...|++++|+..++++++ +.|+ ...|..++.+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence 33444444444444444444444444433333 334445555555555555555555555555 4442 3355555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003122 767 LLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~ 785 (846)
|...|++++|+..++++.+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.57 E-value=9.3e-07 Score=75.32 Aligned_cols=112 Identities=11% Similarity=-0.108 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHH
Q 003122 651 DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLH 730 (846)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 730 (846)
+...+..++..+...|++++|+..++++++..+. +...+..++.++...|++++|+..++++....|. +..++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3567788899999999999999999999987655 7888999999999999999999999999888877 6788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHH
Q 003122 731 LLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKN 766 (846)
Q Consensus 731 ~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 766 (846)
++...|++++|.+.++++++ ..|+ ...+..++.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK--HEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH--cCCCCHHHHHHHHHh
Confidence 99999999999999999999 8885 4466555544
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.57 E-value=6.8e-07 Score=78.86 Aligned_cols=104 Identities=6% Similarity=-0.092 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHH
Q 003122 649 EPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQL 728 (846)
Q Consensus 649 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 728 (846)
+.+...+..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....|. +..+|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 345778999999999999999999999999997765 7888999999999999999999999999888887 77899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 729 LHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 729 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+.+|...|++++|+..|+++++ +.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~--~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS--LAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH--HChh
Confidence 9999999999999999999998 6664
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.56 E-value=4e-07 Score=79.44 Aligned_cols=91 Identities=9% Similarity=0.089 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC--------HHHHHHH
Q 003122 692 EMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN--------FNTYSIL 763 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~~~~~~l 763 (846)
.++..+...|++++|+..++++....|. +..++..++.++...|++++|...++++++ ..|+ ..+|..+
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHh--hccccchhHHHHHHHHHHH
Confidence 3333444444444444444443333333 333444445555555555555555555544 3331 3345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 003122 764 LKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+.+|...|++++|...++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.56 E-value=5.5e-07 Score=78.52 Aligned_cols=115 Identities=9% Similarity=-0.033 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCcc--c----hhhH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVV--S----IGLL 725 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 725 (846)
...+..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++....|.. + ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456788899999999999999999999987655 77888999999999999999999999987665541 1 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q 003122 726 NQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLA 769 (846)
Q Consensus 726 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 769 (846)
..++.++...|++++|.+.|+++++ ..|+...+..+..++..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999 77877677666655443
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.55 E-value=2.2e-06 Score=95.23 Aligned_cols=173 Identities=6% Similarity=-0.094 Sum_probs=137.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 597 LIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAED----------WEKACALFLEMETNNIEPDSIACSALMRAFNKGG 666 (846)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 666 (846)
..++|++.+++++... +-+..+|+.-..++...|+ ++++++.++++++.. +-+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3467788888888753 2246777777777766666 888888888888742 335778888888888888
Q ss_pred --ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc--------
Q 003122 667 --QPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR-DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS-------- 735 (846)
Q Consensus 667 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 735 (846)
+++++++.++++++.++. +..+|..-+.++...| .++++++.++++...+|. +..+|+..+.++...
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 668999999999988776 7888888888888888 888999999988888887 778888888887763
Q ss_pred ------CCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHH
Q 003122 736 ------GRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRK 775 (846)
Q Consensus 736 ------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 775 (846)
+.+++|.+.+++++. +.| |..+|+.+...+.+.|++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999 899 56689988888888888555
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.53 E-value=7.5e-07 Score=78.65 Aligned_cols=107 Identities=7% Similarity=-0.095 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
..+...+..+.+.|++++|+..|+++++..+..... ......| .+..+|.+++.++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~-----------------------~a~~~~~-~~a~a~~n~g~al 67 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE-----------------------EAFDHAG-FDAFCHAGLAEAL 67 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT-----------------------SCCCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch-----------------------hhhhhcc-chHHHHHHHHHHH
Confidence 345556666667777777777777777654431000 0000000 1234899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCC-------CcCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 733 GKSGRIESMMKLFFKIVSSGA-------EANFN-TY----SILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~-------~p~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+.|++++|+..++++++ + .|+.. .| +..+.+|...|++++|+..|+++++
T Consensus 68 ~~Lgr~~eAl~~~~kAL~--l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALH--YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHTTCHHHHHHHHHHHHH--HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999 8 99654 88 9999999999999999999999987
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.53 E-value=6e-07 Score=97.58 Aligned_cols=96 Identities=10% Similarity=-0.020 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHH
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLK 765 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~ 765 (846)
...|..++.+|...|++++|+..++++....|. +..+|..++.+|...|++++|+..|+++++ +.|+ ..++..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 466777788888888888888888888777776 677888899999999999999999999998 8885 448888888
Q ss_pred HHHhcCCHHHHHH-HHHHHHH
Q 003122 766 NLLAAGNWRKYIE-VLQWMED 785 (846)
Q Consensus 766 ~~~~~g~~~~A~~-~~~~~~~ 785 (846)
++.+.|++++|.. .+++|..
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 8888888887764 4555543
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=1.2e-06 Score=78.42 Aligned_cols=61 Identities=11% Similarity=-0.056 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+|..++.+|...|++++|+..++++++ ..| +...|..++.+|...|++++|+..++++.+
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIE--KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHh--hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444555555555555555555554 444 233444445555555555555555555544
No 172
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.52 E-value=9e-07 Score=84.05 Aligned_cols=129 Identities=9% Similarity=-0.008 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 618 ITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-D----------------SIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
..+..++..+...|++++|+..|++.++. .| + ..++..+..+|.+.|++++|+..++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44555566666666666666666666652 11 1 25677778888888888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH-HHHHHHHh
Q 003122 681 QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMM-KLFFKIVS 750 (846)
Q Consensus 681 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 750 (846)
..+. +...+..++.++...|++++|+..++++....|. +..++..++.++...++.+++. ..+.+++.
T Consensus 117 ~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 117 IDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred hCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6654 6777888888888888888888888888777776 6677778888887777777666 55555554
No 173
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.52 E-value=7.4e-07 Score=81.42 Aligned_cols=114 Identities=11% Similarity=-0.059 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDI------TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLL 725 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 725 (846)
...+...+..+.+.|++++|+..|+++++.-. .|+...+ .. ..|. ...+|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~---~~~~-~~~~~ 66 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VE---LDRK-NIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HH---HHHT-HHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HH---HHHH-HHHHH
Confidence 34556666677777777777777777665300 0111100 00 0122 45678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 726 NQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 726 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
..++.+|.+.|++++|+..++++++ +.| +..+|..++.+|...|++++|+..++++++ +.|+..
T Consensus 67 ~nla~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 67 ANMSQCYLNIGDLHEAEETSSEVLK--REETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 8999999999999999999999999 888 466899999999999999999999999987 456543
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.52 E-value=3e-07 Score=100.41 Aligned_cols=116 Identities=7% Similarity=-0.040 Sum_probs=60.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 003122 662 FNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESM 741 (846)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 741 (846)
+.+.|++++|++.|+++++..+. +...+..++.+|...|++++|++.++++....|. +..+|..++.+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 44455555555555555554333 3445555555555555555555555555555444 445555666666666666666
Q ss_pred HHHHHHHHhcCCCcC-HHHHHHHHHH--HHhcCCHHHHHHHHH
Q 003122 742 MKLFFKIVSSGAEAN-FNTYSILLKN--LLAAGNWRKYIEVLQ 781 (846)
Q Consensus 742 ~~~~~~~~~~g~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 781 (846)
++.|+++++ +.|+ ...+..++.+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666 5552 3344445444 555566666666655
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.50 E-value=1.6e-06 Score=75.46 Aligned_cols=95 Identities=11% Similarity=-0.012 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC----HHHHHHH
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS--IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN----FNTYSIL 763 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l 763 (846)
+..++..+...|++++|+..++++....|... ..++..++.++...|++++|+..|+++++ ..|+ ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS--RYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HCCCCcccHHHHHHH
Confidence 34556666677777777777777666555422 15677888888888888888888888888 6774 4467888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 003122 764 LKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 764 ~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
+.+|...|++++|+..++++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888888763
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.48 E-value=6.3e-07 Score=79.13 Aligned_cols=106 Identities=15% Similarity=0.007 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD--------S-----IACSALMRAFNKGGQPSKVLLVAEFMREQDI 683 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (846)
...+...+..+.+.|++++|+..|++.++ +.|+ . ..|..+..++.+.|++++|+..++++++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l-- 86 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY-- 86 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 45667788889999999999999999998 4454 1 25666666666666666666666665542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 684 TFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLL----NQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 684 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
|.+..+.+|. +..+| ...+.++...|++++|+..|+++++ +.|
T Consensus 87 --------------------------~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle--l~p 133 (159)
T 2hr2_A 87 --------------------------FNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE--MIE 133 (159)
T ss_dssp --------------------------HHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHH
T ss_pred --------------------------hhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh--cCC
Confidence 2222223555 56677 8888999999999999999999988 777
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=3.1e-06 Score=75.60 Aligned_cols=63 Identities=16% Similarity=0.071 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 003122 690 FFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA 755 (846)
Q Consensus 690 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 755 (846)
+..++.++...|++++|+..++++....|. +..+|..++.+|...|++++|...|+++++ +.|
T Consensus 68 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p 130 (148)
T 2dba_A 68 HRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVS--LEP 130 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCS
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCC
Confidence 333333444444444444444443333333 334444555555555555555555555555 455
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.45 E-value=7.5e-07 Score=81.41 Aligned_cols=121 Identities=7% Similarity=-0.036 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLA 696 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 696 (846)
...+...+..+.+.|++++|+..|.+.+.. .+ ............ +..+. +. ....+..++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~--~~----------~~~~~~~~~~~~--~~~~~---~~-~~~~~~nla~~ 72 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR--LD----------TLILREKPGEPE--WVELD---RK-NIPLYANMSQC 72 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH----------HHHHTSCTTSHH--HHHHH---HT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HH----------HhcccCCCCHHH--HHHHH---HH-HHHHHHHHHHH
Confidence 567888999999999999999999999872 00 000011111110 01111 11 34556667777
Q ss_pred HHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 697 CSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 697 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
|...|++++|+..++++...+|. ++.+|..++.+|...|++++|+..|+++++ +.|+..
T Consensus 73 ~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred HHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 77777777777777777666666 667788888888888888888888888888 788543
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.45 E-value=5.6e-07 Score=93.49 Aligned_cols=145 Identities=12% Similarity=0.020 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACS 698 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 698 (846)
.+..++..+.+.|++++|+..|++++. +.|+... +...|+.+++...+. ...+..++.+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 344555556666666666666666655 3343321 112222233222111 124555666666
Q ss_pred hcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHH-HHhcCCHHHH
Q 003122 699 LLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKN-LLAAGNWRKY 776 (846)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~-~~~~g~~~~A 776 (846)
..|++++|+..++++....|. +..+|..++.+|...|++++|+..|+++++ +.|+ ..++..|..+ ....+..+++
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666555554 455666666677777777777777777766 6663 3355555555 3344556666
Q ss_pred HHHHHHHHH
Q 003122 777 IEVLQWMED 785 (846)
Q Consensus 777 ~~~~~~~~~ 785 (846)
...|++|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 666666654
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.45 E-value=9.6e-07 Score=74.44 Aligned_cols=97 Identities=8% Similarity=-0.054 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC---HHHHHHH
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN---FNTYSIL 763 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l 763 (846)
...+..++.++...|++++|+..++++....|. +..+|..++.++...|++++|.+.++++++ ..|+ ...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHHHH
Confidence 344555666666666677776666666655555 456677777777777888888888888877 6665 4477777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHC
Q 003122 764 LKNLLAA-GNWRKYIEVLQWMEDA 786 (846)
Q Consensus 764 ~~~~~~~-g~~~~A~~~~~~~~~~ 786 (846)
+.+|... |++++|++.++++.+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7778888 8888888888777653
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.45 E-value=9.1e-07 Score=80.50 Aligned_cols=64 Identities=11% Similarity=-0.031 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVSSG----AEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
..++..++.++...|++++|.+.++++++.. ..+ ...++..++..|...|++++|...++++.+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3456677888888888888888888877521 111 123677778888888888888888888765
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.44 E-value=5.6e-06 Score=91.90 Aligned_cols=169 Identities=11% Similarity=0.012 Sum_probs=143.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 631 EDWEKACALFLEMETNNIEPD-SIACSALMRAFNKGGQ----------PSKVLLVAEFMREQDITFSDSIFFEMVLACSL 699 (846)
Q Consensus 631 g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 699 (846)
...++|++.+++++. +.|+ ..+|+.-..++.+.|+ ++++++.++++++.+++ +..+|..-..++..
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 345788999999998 5565 6678888888888887 89999999999998887 88999999999999
Q ss_pred cC--CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhc-----
Q 003122 700 LR--DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG-RIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAA----- 770 (846)
Q Consensus 700 ~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~----- 770 (846)
.| +++++++.++++.+.+|. +..+|+..+.++...| .++++.+.++++++ ..| |..+|...+.++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccccc
Confidence 99 789999999999999998 8899999999999999 99999999999999 999 677999999887774
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCC
Q 003122 771 ---------GNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFAQTRGG 807 (846)
Q Consensus 771 ---------g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~ 807 (846)
+.+++|++.++++++ +.|+ ...|..+...+...+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCC
Confidence 568999999999987 4564 4456666555555444
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.42 E-value=3.9e-06 Score=72.92 Aligned_cols=100 Identities=8% Similarity=-0.012 Sum_probs=70.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccc--hhhHHHHHH
Q 003122 656 SALMRAFNKGGQPSKVLLVAEFMREQDITFSD---SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVS--IGLLNQLLH 730 (846)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~ 730 (846)
..++..+...|++++|+..|+++++..+. +. ..+..++.++...|++++|+..++++....|... ..++..++.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34555666777777777777777765443 22 4666777777777777777777777766665521 566778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcCHH
Q 003122 731 LLGKSGRIESMMKLFFKIVSSGAEANFN 758 (846)
Q Consensus 731 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 758 (846)
++...|++++|+..|+++++ ..|+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~--~~p~~~ 110 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT--QYPGSD 110 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTSH
T ss_pred HHHHcCCHHHHHHHHHHHHH--HCCCCh
Confidence 88888888888888888888 677543
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=6.2e-06 Score=89.27 Aligned_cols=56 Identities=11% Similarity=0.073 Sum_probs=29.3
Q ss_pred HHHHhcCCHhHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 555 SSCCRLSRYSEALGFLDEMMDLKIPLTN----------------QVYSSVISAYSKQGLIAEAESMFNMMKM 610 (846)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (846)
..+.+.|++++|++.|.++++....... ..+..++..|...|++++|.+.+..+..
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455667777777777776654321110 1244455555555555555555555443
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.41 E-value=1.3e-06 Score=91.80 Aligned_cols=86 Identities=10% Similarity=-0.018 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHH
Q 003122 688 SIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKN 766 (846)
Q Consensus 688 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~ 766 (846)
..+..++.+|...|++++|+..++++....|. +..+|..++.+|...|++++|++.|+++++ +.| +...+..+..+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 34444444445555555555555554444443 344455555555555555555555555555 444 23344444444
Q ss_pred HHhcCCHHHH
Q 003122 767 LLAAGNWRKY 776 (846)
Q Consensus 767 ~~~~g~~~~A 776 (846)
+...|+.+++
T Consensus 351 ~~~~~~~~~a 360 (370)
T 1ihg_A 351 KQKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 186
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.38 E-value=5.4e-07 Score=79.36 Aligned_cols=94 Identities=11% Similarity=0.026 Sum_probs=60.1
Q ss_pred CHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhc
Q 003122 702 DWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGR----------IESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAA 770 (846)
Q Consensus 702 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 770 (846)
.+++|+..+++....+|. +..+|..++.++...|+ +++|+..|+++++ ++|+ ..+|+.++.+|...
T Consensus 17 ~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHh
Confidence 344444444444444444 44444445554444443 4688888888888 8884 45888888888776
Q ss_pred C-----------CHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 003122 771 G-----------NWRKYIEVLQWMEDAGIQPSYGMFRDIVS 800 (846)
Q Consensus 771 g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 800 (846)
| ++++|+..|+++++ +.|+...|...+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 4 78888888888887 6777665544433
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.37 E-value=1.9e-06 Score=78.24 Aligned_cols=101 Identities=10% Similarity=-0.023 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA---N----FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ-PS--- 791 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~--- 791 (846)
.++..++..+...|++++|...++++++ +.+ + ..++..++.+|...|++++|+..++++.+.... .+
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 127 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 127 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHh
Confidence 4677889999999999999999999887 333 1 347888899999999999999999998764111 12
Q ss_pred -HHhHHHHHHHHHhcCCcchHHHHHHHHHHHhhcc
Q 003122 792 -YGMFRDIVSFAQTRGGAEYAAIIQERIESLRMKS 825 (846)
Q Consensus 792 -~~~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~ 825 (846)
...+..++..+...|+.++|...+++..++.++.
T Consensus 128 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 128 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 2256777888899999999999999998887654
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.36 E-value=5.3e-07 Score=77.11 Aligned_cols=84 Identities=11% Similarity=-0.042 Sum_probs=56.0
Q ss_pred cCCHHHHHHHHHhhccC---CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHH
Q 003122 700 LRDWKTTIDLIKQMEPS---FHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRK 775 (846)
Q Consensus 700 ~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 775 (846)
.|++++|+..++++... .|. +..++..++.+|...|++++|+..|+++++ ..| +..++..++.+|...|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVK--QFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHcCCHHH
Confidence 34455555555555444 233 456677777788888888888888888877 777 35577777777888888888
Q ss_pred HHHHHHHHHHC
Q 003122 776 YIEVLQWMEDA 786 (846)
Q Consensus 776 A~~~~~~~~~~ 786 (846)
|+..++++++.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888777663
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.35 E-value=1.7e-06 Score=94.37 Aligned_cols=119 Identities=11% Similarity=-0.055 Sum_probs=75.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 003122 589 ISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-DSIACSALMRAFNKGGQ 667 (846)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 667 (846)
+..+.+.|++++|++.|+++++.. +.+...|..++.+|.+.|++++|+..++++++. .| +..++..++.+|.+.|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 344566777777777777777642 224667777777777777777777777777763 33 35666777777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLA--CSLLRDWKTTIDLIK 711 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 711 (846)
+++|++.|+++++..+. +...+..++.+ +...|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777765544 33444445544 666677777777766
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.35 E-value=3e-06 Score=92.05 Aligned_cols=130 Identities=8% Similarity=-0.007 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPD----------------SIACSALMRAFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (846)
...|..++..|.+.|++++|+..|+++++. .|+ ..+|..+..+|.+.|++++|+..++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 344555555566666666666666666552 222 46778888888889999999999998888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHH-HHHHHHh
Q 003122 681 QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMK-LFFKIVS 750 (846)
Q Consensus 681 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 750 (846)
.++. +...++.++.+|...|++++|+..++++....|. +..++..++.++...|+.++|.+ .+.+++.
T Consensus 346 ~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 LDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7765 6788888888999999999999999988888877 66788888888888888887764 4455543
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.33 E-value=8.6e-07 Score=92.04 Aligned_cols=149 Identities=11% Similarity=-0.032 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
..+..+...+.+.|++++|+..|+++++..+ +.. .+...|+++++...+. ..+|..++.+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 3566788888999999999999999998543 222 1234455555554332 23788999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHH-HHhcCCcc
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG-MFRDIVSF-AQTRGGAE 809 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~-~~~~~~~~ 809 (846)
.+.|++++|+..++++++ +.| +..+|+.++.+|...|++++|+..|+++++ +.|+.. .+..+... ....+..+
T Consensus 241 ~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 889 566999999999999999999999999976 556544 44455444 23355667
Q ss_pred hHHHHHHHHHHHhhc
Q 003122 810 YAAIIQERIESLRMK 824 (846)
Q Consensus 810 ~a~~~~~~l~~l~~~ 824 (846)
.+...|+++..+.+.
T Consensus 317 ~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 317 KQKEMYKGIFKGKDE 331 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhCCCCC
Confidence 788888887766544
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.33 E-value=6.7e-07 Score=76.43 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=66.5
Q ss_pred hcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 664 KGGQPSKVLLVAEFMREQD---ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
..|++++|+..|+++++.+ +. +...+..++.+|...|++++|+..++++....|. +..++..++.+|...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHH
Confidence 3577788888888887753 22 4556777788888888888888888888777777 57788888888888899999
Q ss_pred HHHHHHHHHhcCCCcCH
Q 003122 741 MMKLFFKIVSSGAEANF 757 (846)
Q Consensus 741 A~~~~~~~~~~g~~p~~ 757 (846)
|+..++++++ ..|+.
T Consensus 80 A~~~~~~al~--~~p~~ 94 (117)
T 3k9i_A 80 GVELLLKIIA--ETSDD 94 (117)
T ss_dssp HHHHHHHHHH--HHCCC
T ss_pred HHHHHHHHHH--hCCCc
Confidence 9999988888 66743
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.1e-05 Score=85.02 Aligned_cols=197 Identities=8% Similarity=0.008 Sum_probs=144.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC-CC
Q 003122 519 IGSYMNVGEYEKAIALYKCMKKRKVMPD----------------SVTYTVLISSCCRLSRYSEALGFLDEMMDLKIP-LT 581 (846)
Q Consensus 519 i~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 581 (846)
...+.+.|++++|++.|..+.+...... ...+..++..|...|++++|.+.+.++....-. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 5567889999999999999988642221 124677899999999999999999988753111 12
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 003122 582 N----QVYSSVISAYSKQGLIAEAESMFNMMKM----SGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETN--NI-- 648 (846)
Q Consensus 582 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~-- 648 (846)
. .+.+.+...+...|+++.|..+++.... .+..+. ..++..|+..|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2334445555667899999999988765 222233 567888999999999999999999998752 22
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 003122 649 EPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQ--DI-TF---SDSIFFEMVLACSLLRDWKTTIDLIKQMEP 715 (846)
Q Consensus 649 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 715 (846)
.+. ..++..++..|...|++++|..+++++... .. .| -...+..++..+...|++++|...+.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 222 457888899999999999999999988752 11 11 124566777788889999999988887753
No 194
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.29 E-value=6.4e-06 Score=69.19 Aligned_cols=96 Identities=13% Similarity=0.022 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 003122 584 VYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP--DSIACSALMRA 661 (846)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~ 661 (846)
.+..++..+...|++++|...|+++.+.. +.+...|..++..+...|++++|+..|+++.+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34444444555555555555555554432 2234445555555555555555555555555421 11 24444455555
Q ss_pred HHhc-CChhHHHHHHHHHHHC
Q 003122 662 FNKG-GQPSKVLLVAEFMREQ 681 (846)
Q Consensus 662 ~~~~-g~~~~A~~~~~~~~~~ 681 (846)
+.+. |++++|++.++++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555543
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.28 E-value=1.1e-06 Score=77.45 Aligned_cols=92 Identities=8% Similarity=-0.103 Sum_probs=59.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 666 GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRD----------WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 666 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
+.+++|+..++++++.++. +...+..++.++...++ +++|+..|+++...+|. ...+|..++.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 3445555555555554443 44445545555544443 34777777777766666 556677777777665
Q ss_pred -----------CCHHHHHHHHHHHHhcCCCcCHHHHH
Q 003122 736 -----------GRIESMMKLFFKIVSSGAEANFNTYS 761 (846)
Q Consensus 736 -----------g~~~~A~~~~~~~~~~g~~p~~~~~~ 761 (846)
|++++|++.|+++++ ++|+...|.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~ 128 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYL 128 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHH
Confidence 589999999999999 999876553
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.28 E-value=4.8e-06 Score=87.34 Aligned_cols=131 Identities=8% Similarity=-0.023 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 003122 652 SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHL 731 (846)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 731 (846)
...+..+...+.+.|++++|+..|+++++.... .. ..... +......|. ...+|..++.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--~~----------~~~~~-------~~~~~~~~~-~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--SR----------AAAED-------ADGAKLQPV-ALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HH----------HHSCH-------HHHGGGHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--Cc----------cccCh-------HHHHHHHHH-HHHHHHHHHHH
Confidence 345666677777777777777777777652100 00 00011 111112233 56789999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcC
Q 003122 732 LGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS-YGMFRDIVSFAQTRG 806 (846)
Q Consensus 732 ~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~ 806 (846)
|.+.|++++|++.++++++ +.| +..+|..++.+|...|++++|+..++++.+ +.|+ ......+...+...+
T Consensus 283 ~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999 899 466999999999999999999999999988 4564 444555555444433
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.15 E-value=1.2e-06 Score=73.77 Aligned_cols=92 Identities=9% Similarity=-0.130 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-------HHH
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-------FNT 759 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~ 759 (846)
...+..++..+...|++++|+..++++....|. +..+|..++.+|...|++++|++.++++++ +.|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHHH
Confidence 344555566666666666666666666555555 456666777777777777777777777776 6664 335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 003122 760 YSILLKNLLAAGNWRKYIEVLQ 781 (846)
Q Consensus 760 ~~~l~~~~~~~g~~~~A~~~~~ 781 (846)
+..++.++...|++++|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 5566666666666665554443
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.14 E-value=1.1e-05 Score=68.51 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 722 IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 722 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
..+|..++.+|...|++++|+..|+++++ +.|+ ...|..++.+|...|++++|+..++++.+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444444444444 4442 23444444444444444444444444433
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.07 E-value=5.2e-05 Score=81.92 Aligned_cols=131 Identities=9% Similarity=-0.058 Sum_probs=92.9
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 627 YNTAEDWEKACALFLEMETN---NIEPD----SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL 699 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 699 (846)
+...|++++|+.++++.++. -+.|+ ..+++.|+.+|...|++++|+.+++++++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i------------------ 380 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG------------------ 380 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------
Confidence 45678888888888887651 12232 447788888888888888888888777641
Q ss_pred cCCHHHHHHHHHhh-ccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCcCH---H-HHHHHHHHHHhcC
Q 003122 700 LRDWKTTIDLIKQM-EPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSS---GAEANF---N-TYSILLKNLLAAG 771 (846)
Q Consensus 700 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~---~-~~~~l~~~~~~~g 771 (846)
+++. .+..|. ....+++|+.+|...|++++|+.+++++++. -+.||. . +...|..++..+|
T Consensus 381 ----------~~~~lG~~Hp~-~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 381 ----------YMKLYHHNNAQ-LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp ----------HHHHSCTTCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHcCCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 1111 122232 4566788999999999999999999988751 133432 2 5667777899999
Q ss_pred CHHHHHHHHHHHHHC
Q 003122 772 NWRKYIEVLQWMEDA 786 (846)
Q Consensus 772 ~~~~A~~~~~~~~~~ 786 (846)
++++|..+|+++.+.
T Consensus 450 ~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 450 MFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999774
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.05 E-value=5.8e-05 Score=63.84 Aligned_cols=83 Identities=10% Similarity=-0.039 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 669 SKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKI 748 (846)
Q Consensus 669 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 748 (846)
++|+..|+++++.++. +...+..++.++...|++++|+..++++....|. ...+|..++.+|...|++++|+..|+++
T Consensus 2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4788999999987765 7888999999999999999999999999988887 6788999999999999999999999999
Q ss_pred HhcCCCc
Q 003122 749 VSSGAEA 755 (846)
Q Consensus 749 ~~~g~~p 755 (846)
++ +.|
T Consensus 80 l~--~~~ 84 (115)
T 2kat_A 80 LA--AAQ 84 (115)
T ss_dssp HH--HHH
T ss_pred HH--hcc
Confidence 98 666
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.00 E-value=2.5e-05 Score=62.70 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++..++..+...|++++|+..|+++++ ..| +..++..++.+|...|++++|+..++++.+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444444444444444444444 334 223444444444444444444444444443
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.95 E-value=2.5e-05 Score=64.13 Aligned_cols=63 Identities=16% Similarity=0.026 Sum_probs=54.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++.+|..++.+|...|++++|+..|+++++ +.|+ ..+|..++.+|...|++++|+..++++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 567788899999999999999999999998 8884 55888889999999999999999988875
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=4.5e-05 Score=63.90 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=60.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSY 792 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 792 (846)
+...|..++..+...|++++|++.|+++++ +.| +...|..++.+|...|++++|+..++++++ +.|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCc
Confidence 456788999999999999999999999999 888 566999999999999999999999999987 45653
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.93 E-value=0.00013 Score=64.01 Aligned_cols=110 Identities=10% Similarity=-0.041 Sum_probs=60.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHH
Q 003122 667 QPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK----SGRIESMM 742 (846)
Q Consensus 667 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 742 (846)
++++|+.+|+++.+.|.. . .. ++..|...+..++|++++++....+ ++.++..|+.+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-F--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-h--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 344455555555544411 1 11 4444444444555555555544332 33455566666655 56777777
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 003122 743 KLFFKIVSSGAEANFNTYSILLKNLLA----AGNWRKYIEVLQWMEDAG 787 (846)
Q Consensus 743 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 787 (846)
+.|+++.+. -+..++..|+..|.. .+++++|+.+++++.+.|
T Consensus 82 ~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777662 345566666777666 667777777777776654
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.89 E-value=0.00038 Score=61.01 Aligned_cols=110 Identities=11% Similarity=-0.011 Sum_probs=58.2
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003122 562 RYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT----AEDWEKAC 637 (846)
Q Consensus 562 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 637 (846)
++++|+..|++..+.+ .+... |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555544 22221 4444555555555555555555532 45555555555554 55566666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 003122 638 ALFLEMETNNIEPDSIACSALMRAFNK----GGQPSKVLLVAEFMREQD 682 (846)
Q Consensus 638 ~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 682 (846)
.+|++..+.| +...+..|...|.. .++.++|+.+|+++.+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655543 34455555555555 555666666666655544
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.89 E-value=6e-05 Score=81.42 Aligned_cols=102 Identities=10% Similarity=-0.072 Sum_probs=77.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC---cCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSS---GAE---ANFN-TYSILLKNLLAAGNWRKYIEVLQWMEDA---GIQP 790 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~---p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p 790 (846)
...++++|+.+|...|++++|+.+++++++. -+. |+.. +++.|+.+|..+|++++|+.+++++++. -+-|
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~ 429 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP 429 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567889999999999999999999998752 122 3333 8999999999999999999999998652 1224
Q ss_pred CHH----hHHHHHHHHHhcCCcchHHHHHHHHHHHh
Q 003122 791 SYG----MFRDIVSFAQTRGGAEYAAIIQERIESLR 822 (846)
Q Consensus 791 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~l~~l~ 822 (846)
|-. +...+.......+.+++|+..|.++.+-.
T Consensus 430 ~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 430 SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 34555677777888999999999887633
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.82 E-value=0.00014 Score=58.08 Aligned_cols=83 Identities=13% Similarity=0.099 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHH
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILL 764 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~ 764 (846)
+...+..++..+...|++++|+..++++....|. +..++..++.++...|++++|...++++++ +.| +...+..++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 4567888999999999999999999999888877 678899999999999999999999999999 888 566888888
Q ss_pred HHHHhcC
Q 003122 765 KNLLAAG 771 (846)
Q Consensus 765 ~~~~~~g 771 (846)
.++...|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 8887655
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.79 E-value=8.1e-05 Score=61.04 Aligned_cols=64 Identities=8% Similarity=0.089 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+...+..++.++...|++++|+..++++....|. +..+|..++.+|...|++++|++.|+++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666777777777777777777777666666 556777788888888888888888888877
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.78 E-value=0.00073 Score=68.42 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=60.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMF 795 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 795 (846)
++.+|..++..+...|++++|+..+++++. ++|+...|..++..+.-.|++++|++.++++.. +.|...++
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~--Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGID--LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 677888888888888999999999999999 778877888888889999999999999999887 57776653
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.61 E-value=0.00022 Score=75.60 Aligned_cols=65 Identities=14% Similarity=0.001 Sum_probs=53.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSS-----G-AEANFN-TYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
...++++|+.+|...|++++|+.+++++++. | -.|+.. +|+.|+.+|..+|++++|+.+++++++
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4567888999999999999999999998751 1 123433 899999999999999999999999875
No 211
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.57 E-value=0.00049 Score=73.15 Aligned_cols=92 Identities=10% Similarity=0.008 Sum_probs=66.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSS-----G-AEANFN-TYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
...++++|+.+|...|++++|+.+++++++. | ..|+.. +++.|+..|..+|++++|+.+++++++.
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i------- 400 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI------- 400 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------
Confidence 3567889999999999999999999998751 1 123333 8999999999999999999999998751
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhhcc
Q 003122 794 MFRDIVSFAQTRGGAEYAAIIQERIESLRMKS 825 (846)
Q Consensus 794 ~~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~~ 825 (846)
... .-..+|+...++++.+.+....+
T Consensus 401 -----~~~-~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 401 -----MRV-THGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp -----HHH-HTCTTSHHHHHHHHHHHHHHHHH
T ss_pred -----HHH-hcCCCChHHHHHHHHHHHHHHHH
Confidence 111 11235677777777776655443
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.46 E-value=0.00075 Score=53.96 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=55.0
Q ss_pred chhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003122 721 SIGLLNQLLHLLGKSGR---IESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
++.++..++.++...++ .++|...++++++ ++|+ ..+...++..+.+.|++++|+..|+++++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788888888865554 7999999999999 9995 558888899999999999999999999875
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.44 E-value=0.01 Score=57.44 Aligned_cols=92 Identities=11% Similarity=0.082 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhccCCCcc-chhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCcC--HHHHHHHHHHHHh-cCCH
Q 003122 703 WKTTIDLIKQMEPSFHVV-SIGLLNQLLHLLGK-----SGRIESMMKLFFKIVSSGAEAN--FNTYSILLKNLLA-AGNW 773 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~-~g~~ 773 (846)
..+|...++++.+.+|.. +-.+|..|+..|.. -|+.++|++.|+++++ +.|+ ..+++.++..|+. .|++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCH
Confidence 567888889988888874 34578899999988 4999999999999999 9994 6689899999888 4999
Q ss_pred HHHHHHHHHHHHCCCC--CCHHhHH
Q 003122 774 RKYIEVLQWMEDAGIQ--PSYGMFR 796 (846)
Q Consensus 774 ~~A~~~~~~~~~~g~~--p~~~~~~ 796 (846)
++|...+++++..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 9999999999997666 5544333
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.43 E-value=0.00019 Score=58.53 Aligned_cols=54 Identities=7% Similarity=0.046 Sum_probs=24.3
Q ss_pred HHHhcCCHHHHHHHHHhhccCCCccchh-hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 696 ACSLLRDWKTTIDLIKQMEPSFHVVSIG-LLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 696 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
.+...|++++|+..++++....|. +.. +|..++.+|...|++++|++.|+++++
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444443333 333 444444444444444444444444444
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.39 E-value=0.00017 Score=58.86 Aligned_cols=58 Identities=22% Similarity=0.126 Sum_probs=28.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003122 624 LHAYNTAEDWEKACALFLEMETNNIEP-DSI-ACSALMRAFNKGGQPSKVLLVAEFMREQDI 683 (846)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (846)
+..+...|++++|+..|+++++. .| +.. .+..++.+|...|++++|+..|+++++.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 33444455555555555555542 22 233 444555555555555555555555555433
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.31 E-value=0.0053 Score=62.20 Aligned_cols=74 Identities=9% Similarity=-0.053 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHH
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSIL 763 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 763 (846)
+..++..++..+...|++++|+..++++...+| +...|..++..+...|+.++|.+.|++++. +.|...+|...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~--s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM--SWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 667777777777778999999999999887775 566778889999999999999999999999 99987776543
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.24 E-value=0.0022 Score=55.67 Aligned_cols=83 Identities=11% Similarity=0.028 Sum_probs=53.3
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-c-C-HHHHHHHHHHHHhcCCHHHHHH
Q 003122 705 TTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSG---RIESMMKLFFKIVSSGAE-A-N-FNTYSILLKNLLAAGNWRKYIE 778 (846)
Q Consensus 705 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~-p-~-~~~~~~l~~~~~~~g~~~~A~~ 778 (846)
.+.+.|.+....++. +..+...+++++.+++ ++++++.+++++++ .. | + ...++.|+-+|++.|++++|..
T Consensus 16 ~~~~~y~~e~~~~~~-~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~--~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSV-SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTTCC-CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444444333442 5666667777777776 66677777777777 44 5 2 3366667777777777777777
Q ss_pred HHHHHHHCCCCCCH
Q 003122 779 VLQWMEDAGIQPSY 792 (846)
Q Consensus 779 ~~~~~~~~g~~p~~ 792 (846)
+++++++ ++|+.
T Consensus 93 y~~~lL~--ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCCCC
Confidence 7777776 56654
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.19 E-value=0.0023 Score=55.58 Aligned_cols=87 Identities=15% Similarity=0.024 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhhccCC-CccchhhHHHHHHHHHhcCCHHHHHH
Q 003122 668 PSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR---DWKTTIDLIKQMEPSF-HVVSIGLLNQLLHLLGKSGRIESMMK 743 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 743 (846)
...+.+.|.+..+.++ ++..+.+.++.++.+++ +.++++.+++.+.... |.....++..|+-+|.+.|++++|++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3445666666666665 47788888888888877 5668888888877666 53356788899999999999999999
Q ss_pred HHHHHHhcCCCcCH
Q 003122 744 LFFKIVSSGAEANF 757 (846)
Q Consensus 744 ~~~~~~~~g~~p~~ 757 (846)
+++++++ .+|++
T Consensus 93 y~~~lL~--ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHh--cCCCC
Confidence 9999999 99954
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.10 E-value=0.0033 Score=66.63 Aligned_cols=93 Identities=8% Similarity=-0.148 Sum_probs=64.9
Q ss_pred hcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003122 629 TAEDWEKACALFLEMET---NNIEPD----SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLR 701 (846)
Q Consensus 629 ~~g~~~~A~~~~~~~~~---~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 701 (846)
..|++++|+.++++.++ .-+.|+ ..+++.|+.+|...|++++|+.+++++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-------------------- 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-------------------- 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--------------------
Confidence 34678888888887765 112333 457888888899999999999888887751
Q ss_pred CHHHHHHHHHhh-ccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 702 DWKTTIDLIKQM-EPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 702 ~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+++. .+..|. ....+++|+.+|...|++++|+.+++++++
T Consensus 370 --------~~~~lG~~Hp~-~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 370 --------YSKHYPVYSLN-VASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp --------HHHHSCSSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------HHHHcCCCChH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1111 122222 455678888888888999998888888876
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.99 E-value=0.024 Score=54.91 Aligned_cols=110 Identities=4% Similarity=-0.061 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc-----CCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc-CCHHH
Q 003122 668 PSKVLLVAEFMREQDITF-SDSIFFEMVLACSLL-----RDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS-GRIES 740 (846)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 740 (846)
...|...++++++.++.- +...|..++..|... |+.++|.+.|+++...+|.-++.++..++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 366788888888865431 256788888888884 99999999999999999875678888999999885 99999
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 741 MMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 741 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
|.+++++++. ..|....-.. +...+.-++|..++.++
T Consensus 259 a~~~L~kAL~--a~p~~~P~~~----lan~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 259 FDEALDRALA--IDPESVPHNK----LLVILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHH--CCGGGCSSCH----HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHc--CCCCCCCChh----HHHHHHHHHHHHHHHHh
Confidence 9999999999 6664211111 22233445666555544
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.0092 Score=63.31 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=63.6
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003122 627 YNTAEDWEKACALFLEMETN---NIEPD----SIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSL 699 (846)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 699 (846)
+...|++++|+.++++.++. -+.|+ ..+++.|+.+|...|++++|+.+++++++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i------------------ 358 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP------------------ 358 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh------------------
Confidence 44567788888888777752 12233 346777777788888888888877776641
Q ss_pred cCCHHHHHHHHHhh-ccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 700 LRDWKTTIDLIKQM-EPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 700 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
+++. .+..|. ....+++|+..|...|++++|+.+++++++
T Consensus 359 ----------~~~~lg~~Hp~-~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 359 ----------YRIFFPGSHPV-RGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ----------HHHHSCSSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHcCCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1111 122222 455678888889999999999988888875
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.91 E-value=0.0032 Score=50.24 Aligned_cols=68 Identities=9% Similarity=-0.029 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 686 SDSIFFEMVLACSLLRD---WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+...+..++.++...++ .++|..+++++...+|. ++.++..++..+.+.|++++|+..|+++++ ..|+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~--~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD--SNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--CCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 44455555555443333 45555555555555555 555566666666666666666666666666 5554
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.84 E-value=0.051 Score=63.71 Aligned_cols=188 Identities=17% Similarity=0.077 Sum_probs=105.3
Q ss_pred HhcCCHHHHHH-HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 523 MNVGEYEKAIA-LYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEA 601 (846)
Q Consensus 523 ~~~g~~~~A~~-~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 601 (846)
...+++++|.+ ++.. .++......++..+.+.|..++|.++.++.. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 35677777765 4321 1112223566666777777777776553211 112334567888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 003122 602 ESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQ 681 (846)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (846)
.++.+.+ .+...|..|...+.+.++++.|.+.|.++.+ |..+...|...|+.+....+.+.+...
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8775432 3677888888888888888888888887753 444555555566666655555444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH----
Q 003122 682 DITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF---- 757 (846)
Q Consensus 682 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---- 757 (846)
|- +.....++...|++++|+++ |.+.+++++|..+.++ ..|..
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~----------------------~~~~~~~~~A~~lA~~-----~~~~~~~i~ 783 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDL----------------------LIKSQRFSEAAFLGST-----YGLGDNEVN 783 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHH----------------------HHHTTCHHHHHHHHHH-----TTCCHHHHH
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHH----------------------HHHcCChHHHHHHHHH-----hCCChHHHH
Confidence 31 11122234445555555544 3445666777666554 33433
Q ss_pred HHHHHHHHHHHhcCCHHHH
Q 003122 758 NTYSILLKNLLAAGNWRKY 776 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A 776 (846)
.........+...|+.+.|
T Consensus 784 ~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 784 DIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHhccchhHH
Confidence 2334444455566654333
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.83 E-value=0.0061 Score=49.98 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCC------CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPSF------HVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
..-+..++..+...|+++.|+.+++.+.... ......++..|+.+|.+.|+++.|...++++++ +.|+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3344455555555555555555555543211 122456677777777777777777777777777 77744
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.55 E-value=0.019 Score=46.87 Aligned_cols=72 Identities=7% Similarity=-0.014 Sum_probs=58.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh
Q 003122 721 SIGLLNQLLHLLGKSGRIESMMKLFFKIVSSG-----AEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGM 794 (846)
Q Consensus 721 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 794 (846)
++.-+..+|..+...|+++.|...|+++++.- ..+ ...++..|+.+|.+.|++++|+..++++.+ +.|+...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHH
Confidence 34456689999999999999999999998731 012 345899999999999999999999999987 5676543
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.51 E-value=0.013 Score=48.78 Aligned_cols=82 Identities=15% Similarity=0.004 Sum_probs=40.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHhhccCC-CccchhhHHHHHHHHHhcCCHHHHHHHHH
Q 003122 671 VLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT---TIDLIKQMEPSF-HVVSIGLLNQLLHLLGKSGRIESMMKLFF 746 (846)
Q Consensus 671 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 746 (846)
+.+.|......|. ++..+-+.++.++.++.+..+ ++.+++.+.... |...-.++..|+-++.+.|++++|++.++
T Consensus 20 ~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 20 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344444443333 345555555555555544433 555555544443 22233444455555555555555555555
Q ss_pred HHHhcCCCc
Q 003122 747 KIVSSGAEA 755 (846)
Q Consensus 747 ~~~~~g~~p 755 (846)
.+++ .+|
T Consensus 99 ~lL~--~eP 105 (126)
T 1nzn_A 99 GLLQ--TEP 105 (126)
T ss_dssp HHHH--HCT
T ss_pred HHHH--hCC
Confidence 5555 555
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.40 E-value=0.14 Score=59.79 Aligned_cols=29 Identities=7% Similarity=0.115 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 003122 511 NTVAYNSAIGSYMNVGEYEKAIALYKCMK 539 (846)
Q Consensus 511 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 539 (846)
+...|..+...+.+.|+++.|.+.|..+.
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 44556666666666666666666666554
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.88 E-value=0.086 Score=43.88 Aligned_cols=91 Identities=8% Similarity=0.012 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCC-c-C-HHHHHHHHHHHHhcCCHHHH
Q 003122 703 WKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES---MMKLFFKIVSSGAE-A-N-FNTYSILLKNLLAAGNWRKY 776 (846)
Q Consensus 703 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~-p-~-~~~~~~l~~~~~~~g~~~~A 776 (846)
...+.+.+.+....++ ++..+-..+++++.++.+... ++.+++.+++ .. | + ....+.|+-++++.|+|++|
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~--~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP--KGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555555544344 367788899999999886555 9999999998 44 5 2 33677788889999999999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHH
Q 003122 777 IEVLQWMEDAGIQPSYGMFRDI 798 (846)
Q Consensus 777 ~~~~~~~~~~g~~p~~~~~~~l 798 (846)
...++.+++ ++|+......|
T Consensus 94 ~~~~~~lL~--~eP~n~QA~~L 113 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHH--hCCCCHHHHHH
Confidence 999999998 67876544444
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.61 E-value=0.13 Score=42.91 Aligned_cols=78 Identities=10% Similarity=-0.046 Sum_probs=53.8
Q ss_pred CCccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003122 717 FHVVSIGLLNQLLHLLGKSG---RIESMMKLFFKIVSSGAEAN--FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPS 791 (846)
Q Consensus 717 ~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 791 (846)
.+.+++.+-..+++++.++. +..+++.+++.+.+ ..|. ...++.|+-++++.|++++|....+.+++ +.|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~--~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 44556667777788887765 45567888888877 4462 33666677778888888888888888876 5676
Q ss_pred HHhHHHH
Q 003122 792 YGMFRDI 798 (846)
Q Consensus 792 ~~~~~~l 798 (846)
......|
T Consensus 111 N~QA~~L 117 (134)
T 3o48_A 111 NKQVGAL 117 (134)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 6544433
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.84 Score=40.61 Aligned_cols=103 Identities=10% Similarity=0.044 Sum_probs=68.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003122 415 NAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKV 494 (846)
Q Consensus 415 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 494 (846)
....+.|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445678888887777665 2677788888888888888888888877543 334455555667766
Q ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 495 NIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIALYKCM 538 (846)
Q Consensus 495 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 538 (846)
+..++-......| -++.....+...|++++++++|.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 6666655555543 1344455566678888877777554
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.06 Score=60.45 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 725 LNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 725 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
+..=+..|...|+++-|.++.++++. +.| +..+|..|+.+|...|+|+.|+-.++-+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33445667778999999999999999 899 5779999999999999999999988876
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.84 Score=40.62 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=20.1
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 277 NGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSM 326 (846)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 326 (846)
..|+++.|.++.+++ .+...|..|.+...+.|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444433 13344444444444455555444444443
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.11 E-value=0.34 Score=41.01 Aligned_cols=72 Identities=11% Similarity=-0.029 Sum_probs=49.5
Q ss_pred ccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCcC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 719 VVSIGLLNQLLHLLGKSG---RIESMMKLFFKIVSSGAEAN-F-NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 719 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
.++..+-..+++++.++. +..+++.+++.+.. ..|+ . ...+.|+-++++.|+|++|..+.+.+++ ++|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~--~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK--EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH--HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 346666667777777765 55567778888777 4552 2 2555666778888888888888888877 567654
Q ss_pred h
Q 003122 794 M 794 (846)
Q Consensus 794 ~ 794 (846)
.
T Consensus 112 Q 112 (144)
T 1y8m_A 112 Q 112 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.07 E-value=6.5 Score=45.18 Aligned_cols=259 Identities=8% Similarity=0.045 Sum_probs=124.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--C-----CCHHHHHHHHH
Q 003122 415 NAYGRSQQPVKAREVFNMMRINN--LKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGI--E-----PNIVSICTLLA 485 (846)
Q Consensus 415 ~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~-----~~~~~~~~ll~ 485 (846)
-+....|+.++++.+++.....+ -.+....-..+.-+....|..+++..++...+...- . +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34566778888877776654321 111222333344445555655677777777665321 0 11111122222
Q ss_pred HHHhcCC-HHHHHHHHHHHHhCCCccCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH--HHHHHHhc
Q 003122 486 ACGRCGR-KVNIDAVLLAAEMRDIKLNT--VAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTV--LISSCCRL 560 (846)
Q Consensus 486 ~~~~~g~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--li~~~~~~ 560 (846)
++.-.|. -+++...+..+...+-. .. .+-.++...++..|+-+....++..+.+.. +...... +.-++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 2222232 23444444444443211 11 112233334556677666666776666531 2233222 33344467
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003122 561 SRYSEALGFLDEMMDLKIPLTNQV--YSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACA 638 (846)
Q Consensus 561 g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 638 (846)
|+.+.+..+.+.+.... .|.... -.+++-+|+..|+.....+++..+.... ..++.-...+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 78787777777776531 122211 1234456677788766666777777631 1223322333333444555555566
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 003122 639 LFLEMETNNIEPDSIACSALMRAFNKGGQP-SKVLLVAEFMRE 680 (846)
Q Consensus 639 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 680 (846)
+++.+.+.+ .|...--..+.-+....|+. .+|+..+..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 665555432 23322222333334444544 467777777764
No 235
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.90 E-value=0.00028 Score=72.45 Aligned_cols=431 Identities=12% Similarity=0.130 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 003122 196 ETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLSAY 275 (846)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 275 (846)
..|..|..+..+.|+..+|++.|- +. -|...|..++.+..+.|++++-.+.+....+.. .+...=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 346666666666666666665542 22 266778889999999999998888877666543 2445556788889
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 276 KNGAQYSKALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIEN 355 (846)
Q Consensus 276 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 355 (846)
++.++..+-.+++ . .||..-...+.+-|...|.++.|.-+|..+. -|..|...+.+.|++..
T Consensus 127 Ak~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----------N~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 127 AKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----------CCTTTSSSSSSCSGGGS
T ss_pred HhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----------cHHHHHHHHHHHHHHHH
Confidence 8888865533322 2 3666667788888888888888887775542 24556666777888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003122 356 CKGVFNTMLAEGLKPNIVSYNALMAAYASHGMSKEALSVFNEIKKNGLCPDIVSYTSLLNAYGRSQQPVKAREVFNMMRI 435 (846)
Q Consensus 356 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 435 (846)
|.+.-++ .-++.+|..+-.+|...+.+.-|.-.--.+.-. +| -...|+..|-..|.+++-+.+++.-..
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 7664333 235568888888999988887776554444421 11 233467778888999998888887764
Q ss_pred CCCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHH
Q 003122 436 NNLKPNLVSYSALIDAYGSNGLLAEAVEVFREMEQDGIEPNIVSICTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAY 515 (846)
Q Consensus 436 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 515 (846)
.. ......|+-|.-.|++- ..++-++.++..-.+---| .++.+|....-+.
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNip------KviracE~ahLW~--------------------- 308 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIP------KVLRAAEQAHLWA--------------------- 308 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCT------TTHHHHTTTTCHH---------------------
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHH------HHHHHHHHHhhHH---------------------
Confidence 32 45677788887777764 3444444443322210012 2344443333333
Q ss_pred HHHHHHHHhcCCHHHHHH-------------HHHHHhhCCCCCCHHHHHHHHHHHH---------------hcCCHhHHH
Q 003122 516 NSAIGSYMNVGEYEKAIA-------------LYKCMKKRKVMPDSVTYTVLISSCC---------------RLSRYSEAL 567 (846)
Q Consensus 516 ~~li~~~~~~g~~~~A~~-------------~~~~~~~~~~~p~~~~~~~li~~~~---------------~~g~~~~A~ 567 (846)
.++-.|++-.++|.|.. .|.++..+ ..|...|...|..|. ..=+.....
T Consensus 309 -ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV 385 (624)
T 3lvg_A 309 -ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAV 385 (624)
T ss_dssp -HHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTH
T ss_pred -HHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHH
Confidence 33333333333333321 11111111 123333333333222 222223333
Q ss_pred HHHHHHHH----------CCCCCCHHHHHHHHHHHHhcCCHHHHHH------------HHHHHHHcCCCCCHHHHHHHHH
Q 003122 568 GFLDEMMD----------LKIPLTNQVYSSVISAYSKQGLIAEAES------------MFNMMKMSGCSPDVITYTAMLH 625 (846)
Q Consensus 568 ~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~------------~~~~~~~~~~~p~~~~~~~l~~ 625 (846)
+++.+.-. ..-..+..+-.++-+.|....+++.-.. +-+++.++ +-...-..-..
T Consensus 386 ~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~ 462 (624)
T 3lvg_A 386 NYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAY 462 (624)
T ss_dssp HHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHH
T ss_pred HHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHH
Confidence 33332110 0012344555566666777766554322 22222221 12333344445
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003122 626 AYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKT 705 (846)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 705 (846)
.|.+.++|++++.+.++= ++ |.-.+.....+|+.+-|.++++-.++.| +.+.|...+..|...=+.+.
T Consensus 463 LYkkn~rw~qsi~l~KkD---kl------ykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDv 530 (624)
T 3lvg_A 463 LFKGNNRWKQSVELCKKD---SL------YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDV 530 (624)
T ss_dssp HHHTTCHHHHHSSCSSTT---CC------TTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHH
T ss_pred HHHhcccHHHHHHHHHhc---cc------HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHH
Confidence 567777777776543321 12 2222344556777777888888777765 45666666666666666666
Q ss_pred HHHHH
Q 003122 706 TIDLI 710 (846)
Q Consensus 706 A~~~~ 710 (846)
++++-
T Consensus 531 VlEla 535 (624)
T 3lvg_A 531 VLETA 535 (624)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.84 E-value=1.5 Score=36.58 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=39.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003122 727 QLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQ 789 (846)
Q Consensus 727 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 789 (846)
.-+..+...|+.++-.+++..++. ...|++.....++.+|.+.|+..+|.+++.++-+.|++
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444555666666666666666433 14456666777777777777777777777777776653
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.76 E-value=0.16 Score=42.48 Aligned_cols=74 Identities=12% Similarity=-0.030 Sum_probs=59.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 682 DITFSDSIFFEMVLACSLLRDW---KTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 682 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
+..|+..+-+..+.++.++.+. .+++.+++.+....|...-.++..|+-++.+.|++++|+++.+.+++ .+|++
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 4566777777888888777654 46788888877766655677888999999999999999999999999 89954
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.45 E-value=0.42 Score=40.78 Aligned_cols=110 Identities=14% Similarity=0.050 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchh
Q 003122 650 PDSIACSALMRAFNKGGQP------SKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIG 723 (846)
Q Consensus 650 p~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 723 (846)
-|..+|-..+....+.|++ ++.+++|++++..- +|+.. +.|+. -+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~------------~~wrr---------------YI~ 62 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKY------------GQNES---------------FAR 62 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGG------------TTCHH---------------HHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-Ccccc------------ccHHH---------------HHH
Confidence 3566777777777777777 66777777777642 22211 01110 112
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQP 790 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 790 (846)
+|...+.. ...++.++|+++|+.+++. ... ...|...+..-.++|+...|.+++.+++..+.+|
T Consensus 63 LWIrYA~~-~ei~D~d~aR~vy~~a~~~--hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 63 IQVRFAEL-KAIQEPDDARDYFQMARAN--CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHHHH-HHHHCGGGCHHHHHHHHHH--CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 22222222 3447888999999999873 232 4477777777788999999999999998766444
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.39 E-value=0.48 Score=40.15 Aligned_cols=73 Identities=12% Similarity=-0.031 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH
Q 003122 683 ITFSDSIFFEMVLACSLLRDW---KTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF 757 (846)
Q Consensus 683 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 757 (846)
..|+..+-+..+.++.++.+. .+++.+++.+....|...-.++..|+-++.+.|++++|+++.+.+++ .+|++
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 356777777788888777654 46778888877766655677888899999999999999999999999 99954
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.36 E-value=0.35 Score=41.23 Aligned_cols=100 Identities=10% Similarity=0.073 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHHhcCChhHHHHHHHHHHH
Q 003122 614 SPDVITYTAMLHAYNTAEDW------EKACALFLEMETNNIEPDSI----ACSALMR---AFNKGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 614 ~p~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~~----~~~~l~~---~~~~~g~~~~A~~~~~~~~~ 680 (846)
+-|..+|-..+...-+.|+. ++.+++|+++... ++|+.. .|..|-- .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34688999999998888998 8899999999875 666521 1211111 12233555666666665554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 681 QDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 681 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
.. .. -..+|...+..-.++|++..|++++.+++.
T Consensus 89 ~h-----------------------------------Kk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 89 NC-----------------------------------KK-FAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HC-----------------------------------TT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Hh-----------------------------------HH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 31 11 134555666666667777777777777776
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.74 E-value=3.1 Score=43.99 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHH
Q 003122 586 SSVISAYSKQGLIAEAESMFNMMKM--SGCSPD---VITYTAMLHAYNTAEDWEKACALFLEMET----NNIEPD--SIA 654 (846)
Q Consensus 586 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~--~~~ 654 (846)
..|...|...|++.+|..++..+.. .|.... ...+...+..|...+++.+|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 3455556666666666666666543 121111 23444555556666666666666665431 111122 123
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 003122 655 CSALMRAFNKGGQPSKVLLVAEFMR 679 (846)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (846)
+...+..+...+++.+|...|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444555556666666665555554
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.19 E-value=1 Score=46.88 Aligned_cols=122 Identities=7% Similarity=-0.010 Sum_probs=83.7
Q ss_pred hcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 003122 664 KGGQPSKVLLVAEFMREQ--DITFSDSIFFEMVLACSLLRDWKTT-IDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIES 740 (846)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 740 (846)
..|+.+.|...+++++.. |.-..... ...|-.+ ...++.. -..+...++..+...|+.++
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~----------~~~w~~~~r~~l~~~-------~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLR----------DFQFVEPFATALVED-------KVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGT----------TSTTHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCC----------chhHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHH
Confidence 457888888888888763 32211100 0122111 1222221 12244577788889999999
Q ss_pred HHHHHHHHHhcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHhHHHHHHHHHh
Q 003122 741 MMKLFFKIVSSGAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED-----AGIQPSYGMFRDIVSFAQT 804 (846)
Q Consensus 741 A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~l~~~~~~ 804 (846)
|...+.+++. ..| +-..|..|+.+|...|+..+|++.|++..+ .|+.|++.+-......+..
T Consensus 190 a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~~ 257 (388)
T 2ff4_A 190 VIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQ 257 (388)
T ss_dssp HHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHcC
Confidence 9999999999 899 677999999999999999999999988644 5999998765444444444
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.19 E-value=3.2 Score=34.57 Aligned_cols=68 Identities=10% Similarity=0.115 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003122 686 SDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAE 754 (846)
Q Consensus 686 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 754 (846)
+.+.+...++.+..+|+.++-.+++..+....+. ++.++..++.+|.+.|+..+|.+++.++-++|+.
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~-~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEV-SASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCC-ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3444555556667777777777777775433332 5667778888888888888888888888887754
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.90 E-value=0.7 Score=40.37 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCC
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFH 718 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 718 (846)
.+.-+.++.+|...+++++|+..++.++...-
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R 153 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSRQR 153 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc
Confidence 34555677777777888888877777654433
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.30 E-value=9.7 Score=37.83 Aligned_cols=19 Identities=16% Similarity=0.101 Sum_probs=13.6
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003122 767 LLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~ 785 (846)
|.-.|+...|..+++...+
T Consensus 197 yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 197 YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 6777888888876666543
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.99 E-value=6 Score=41.80 Aligned_cols=50 Identities=8% Similarity=0.171 Sum_probs=35.0
Q ss_pred CCHhHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 561 SRYSEALGFLDEMMD-----LKIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKM 610 (846)
Q Consensus 561 g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (846)
|++++|++.+-.+.+ .+..........++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 677788777765553 23455667777888888888888887777766554
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.61 E-value=3.5 Score=39.28 Aligned_cols=55 Identities=11% Similarity=0.133 Sum_probs=26.1
Q ss_pred hcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC
Q 003122 699 LLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN 756 (846)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 756 (846)
+.|++++|++.++.-.+..|. +...-..|...||-.|+++.|.+.++-+.+ +.|+
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~ 63 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK--LFPE 63 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGG
T ss_pred hCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCch
Confidence 344444444444444444444 444444455555555555555555555555 4443
No 248
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.19 E-value=25 Score=40.40 Aligned_cols=255 Identities=10% Similarity=-0.014 Sum_probs=133.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCC-------ccCHHHHHHHHH
Q 003122 450 DAYGSNGLLAEAVEVFREMEQDGIEPNIVSIC--TLLAACGRCGRKVNIDAVLLAAEMRDI-------KLNTVAYNSAIG 520 (846)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~ 520 (846)
-+....|+.++++.++...+..+-..+..+-. .+.-+...+|...++..++.......- .+....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34666788888888887766421122333322 233344556665567776666554321 011222223333
Q ss_pred HHHhcCC-HHHHHHHHHHHhhCCCCCCHHH--HH--HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003122 521 SYMNVGE-YEKAIALYKCMKKRKVMPDSVT--YT--VLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQ 595 (846)
Q Consensus 521 ~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~--~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 595 (846)
++.-.|. -+++...+..++... +... .. .+...++-.|+.+....++..+.+.. ..+..-...+.-++...
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhC
Confidence 3333332 245666666665532 2221 22 23333445677777777777766632 22222233344445577
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003122 596 GLIAEAESMFNMMKMSGCSPDV-ITYT---AMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKV 671 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p~~-~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 671 (846)
|+.+.+..+.+.+... .+. .-|. +++-+|+-.|+.....+++..+.+. ...+......+.-++...|+.+.+
T Consensus 538 g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 538 GRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHH
Confidence 8888888888888763 332 2232 3445677888877666788888763 122222223333345556777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCC-HHHHHHHHHhhcc
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLA--CSLLRD-WKTTIDLIKQMEP 715 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~-~~~A~~~~~~~~~ 715 (846)
..+++.+.+.+ +..+-.....+ ....|+ ..++++.+..+..
T Consensus 614 ~rlv~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 614 PRIVQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHTTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77776665533 33332222222 223333 2677888887754
No 249
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.07 E-value=7.9e-06 Score=83.64 Aligned_cols=242 Identities=14% Similarity=0.148 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 513 VAYNSAIGSYMNVGEYEKAIALYKCMKKRKVMPDSVTYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAY 592 (846)
Q Consensus 513 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 592 (846)
..|..|..++...+++.+|++.|-+.. |...|..++.+..+.|.+++-+.++..+.+.. -+..+=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 345556666665565555554332211 23335556666666666666666665554432 2223334555566
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------C-CCCCCH
Q 003122 593 SKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMET-------------------N-NIEPDS 652 (846)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------~-g~~p~~ 652 (846)
++.+++.+-.+++. .||..-...+++-|...|.++.|.-+|..+.. . .-..+.
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 66665544322221 24444444555555555555555544433211 0 011234
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 003122 653 IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLL 732 (846)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 732 (846)
.||..+..+|...+.+.-|...--.++-. .+.+..++..|...|.+++-+.+++....... ...+.+..|+-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglEr-AHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTT-CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc-hhHHHHHHHHHHH
Confidence 57777777888877777665443333321 11223455667788888888888887764333 3778888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003122 733 GKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQW 782 (846)
Q Consensus 733 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 782 (846)
.+-.- ++-.+-++-... .-|. -.+++++.+.--|.|+.-+|..
T Consensus 274 sKY~P-eKlmEHlklf~s---riNi---pKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 274 SKFKP-QKMREHLELFWS---RVNI---PKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HSSCT-THHHHHHTTSSS---SSCC---TTTHHHHTTTTCHHHHHHHHHH
T ss_pred HhcCH-HHHHHHHHHHHH---hccH---HHHHHHHHHHhhHHHHHHHHhc
Confidence 77632 222222211110 1111 1246667777778887766653
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.94 E-value=1.6 Score=38.08 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 756 NFNTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 756 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
+...-+.++.+|.+.|++++|+.+++.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 4456677889999999999999998765
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.52 E-value=6.9 Score=47.27 Aligned_cols=149 Identities=11% Similarity=0.051 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--------------
Q 003122 585 YSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMETNNIEP-------------- 650 (846)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-------------- 650 (846)
...++..+...+..+-|.++..- ++.+...-..++.+|...|++++|...|++... |+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccc
Confidence 33566677788888877664432 234555556778889999999999999988632 1111
Q ss_pred ---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhhccCC
Q 003122 651 ---------DSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSD----SIFFEMVLACSLLRDWKTTIDLIKQMEPSF 717 (846)
Q Consensus 651 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 717 (846)
-..-|..++..+.+.|.++.++++.+.+++.....+. ..|..+...+...|++++|-..+-.++...
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 1123566777788888888888888888764322122 246667777888888888888887776443
Q ss_pred CccchhhHHHHHHHHHhcCCHHHH
Q 003122 718 HVVSIGLLNQLLHLLGKSGRIESM 741 (846)
Q Consensus 718 ~~~~~~~~~~l~~~~~~~g~~~~A 741 (846)
- -..++..|+..+++.|.++.=
T Consensus 969 ~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 969 L--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp S--CHHHHHHHHHHHHHHCCHHHH
T ss_pred H--HHHHHHHHHHHHHhCCChhhh
Confidence 3 346778888888888877654
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.29 E-value=4.4 Score=38.61 Aligned_cols=115 Identities=13% Similarity=0.071 Sum_probs=79.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchh--hHHHHHHHHHhcCCH
Q 003122 661 AFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIG--LLNQLLHLLGKSGRI 738 (846)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~ 738 (846)
...+.|+.++|++.....++..|. |...-..+...+|-.|+|+.|..-++.....+|...+. .|..++.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 456788999999988888887766 77777788889999999999999888887777764422 23344333
Q ss_pred HHHHHHHHHHHhcCCCc----CHHHHH-HHHHH--HHhcCCHHHHHHHHHHHHHC
Q 003122 739 ESMMKLFFKIVSSGAEA----NFNTYS-ILLKN--LLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p----~~~~~~-~l~~~--~~~~g~~~~A~~~~~~~~~~ 786 (846)
+..=.+.+..+..| ++..|. .|+.+ ....|+.++|.++..++.+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 33333444444455 223343 34444 55679999999999998774
No 253
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.17 E-value=1.6 Score=49.18 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 003122 760 YSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQTRG 806 (846)
Q Consensus 760 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 806 (846)
|..|+....+.++++||++.|+..+.. .=++.....|+..|...+
T Consensus 616 WEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 616 WELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 556666666666666666666666643 235555666666665543
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.09 E-value=12 Score=45.02 Aligned_cols=144 Identities=8% Similarity=0.075 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETNNIEPDS----IACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFE 692 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 692 (846)
..-|..++..+.+.+.++.++++-+.+++..-.-+. ..|..+..++.+.|++++|...+-.+.+... -...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 345777888888999999999998888864222221 2577888999999999999999988876443 4667777
Q ss_pred HHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC-HHHH-HHHHHHHHhc
Q 003122 693 MVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEAN-FNTY-SILLKNLLAA 770 (846)
Q Consensus 693 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~-~~l~~~~~~~ 770 (846)
++..++..|..++-.. + --.|..++..+++..-.+....+. ...| ..|-..+...
T Consensus 977 LV~~lce~~~~~~L~~----l-------------------pf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r 1033 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLLN----Y-------------------SMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKH 1033 (1139)
T ss_dssp HHHHHHHHCCHHHHHH----H-------------------TTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChhhhhC----C-------------------CCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhcc
Confidence 7777777766443221 1 112333444444432221001222 1234 4445557778
Q ss_pred CCHHHHHH-HHHHHHH
Q 003122 771 GNWRKYIE-VLQWMED 785 (846)
Q Consensus 771 g~~~~A~~-~~~~~~~ 785 (846)
|++.+|.. +|+.+.+
T Consensus 1034 ~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 1034 QNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HTTSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH
Confidence 88876654 4666654
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.50 E-value=21 Score=36.68 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHhc-CCHhHHHHHHHHHHHCCCCCCHHHH-
Q 003122 512 TVAYNSAIGSYMNVGEYEKAIALYKCMKKR-KVMPD---SVTYTVLISSCCRL-SRYSEALGFLDEMMDLKIPLTNQVY- 585 (846)
Q Consensus 512 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~---~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~- 585 (846)
..+...|...|.+.|+.++...++.....- +..|- ......++..+... +..+.-.++..+.++.. .....+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456778889999999999999998876542 11222 23355667766554 33444445554444311 0111122
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHH
Q 003122 586 -----SSVISAYSKQGLIAEAESMFNMMKMS--GCSPD---VITYTAMLHAYNTAEDWEKACALFLEMET--NNIEPDSI 653 (846)
Q Consensus 586 -----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~~p~~~ 653 (846)
..++..|...|++.+|.+++..+.+. ..... ...+..-+..|...+++.++...+.+... ..+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25778888888888888888887762 11111 34555666777888888888888887764 12324433
Q ss_pred HHH----HHHHHHH-hcCChhHHHHHHHHHHH
Q 003122 654 ACS----ALMRAFN-KGGQPSKVLLVAEFMRE 680 (846)
Q Consensus 654 ~~~----~l~~~~~-~~g~~~~A~~~~~~~~~ 680 (846)
... .-+-.+. ..+++.+|...|-+..+
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 222 1223455 67888888777766653
No 256
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.84 E-value=46 Score=36.61 Aligned_cols=116 Identities=5% Similarity=-0.122 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 003122 596 GLIAEAESMFNMMKMSGCSPDVI----TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKV 671 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 671 (846)
.+.+.|...+....... ..+.. .+..++..+...+...++...+.+.... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 37788888888876543 22322 2233333344445355666677766553 33433333344444567999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhcc
Q 003122 672 LLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEP 715 (846)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 715 (846)
...|+.|...... .....+=++.++...|+.++|..+++.+..
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999888653222 445556677788888999999998888753
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.76 E-value=32 Score=33.88 Aligned_cols=165 Identities=11% Similarity=-0.016 Sum_probs=82.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 003122 587 SVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACAL----FLEMETNNIEPDSIACSALMRAF 662 (846)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~g~~p~~~~~~~l~~~~ 662 (846)
++..=|.+++++++|++++..-.. .+.+.|++..|.++ .+-..+.+.+++......++..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 334446677777777776544332 23445665555544 33334456777777666676666
Q ss_pred HhcCChh-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 003122 663 NKGGQPS-KVLLVAEFMRE----QD--ITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKS 735 (846)
Q Consensus 663 ~~~g~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 735 (846)
.....-+ +=..+++++++ .| ..-++..+..++..|...|++.+|...+-....+ +...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~----s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD----SMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH----HHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc----cHHHHHHHHHHHHHh
Confidence 5433221 12334444442 11 1225556666666666667766666655422111 122233333322222
Q ss_pred ---CCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 736 ---GRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 736 ---g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
|.-.++--.+-++ +-.|.-.|+...|..+++...+
T Consensus 179 ~~~~~~~e~dlf~~Ra---------------VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 179 VDDIEDSTVAEFFSRL---------------VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp TTCCCHHHHHHHHHHH---------------HHHHHHTTBHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHH---------------HHHHHHhcCHHHHHHHHHHHHH
Confidence 2222221111111 1126678899998888877643
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.15 E-value=12 Score=33.88 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 003122 724 LLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANF-NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRD 797 (846)
Q Consensus 724 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 797 (846)
+|..++..+ .++...++..+|.-+...|+.-.. .-|...+..+...|++++|.++|+..++.+-+|-...-..
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~ 155 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRS 155 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence 344444443 234466777777777776666543 3666667777777777777777777777766665444333
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.76 E-value=4.6 Score=41.80 Aligned_cols=69 Identities=13% Similarity=0.220 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 003122 303 HNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLA-----EGLKPNIVS 374 (846)
Q Consensus 303 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 374 (846)
...++..+...|++++|+..+..+....|- +...|..++.++.+.|+..+|++.|+.+.+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~---~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY---REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345566777788888888888887776654 777888888888888888888888877644 377776654
No 260
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=81.54 E-value=32 Score=31.46 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=14.6
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 298 PDTTTHNIVIYCLVKLGQYDKAIDLFHSMRE 328 (846)
Q Consensus 298 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 328 (846)
++..+-...+.++.+.+. .++...+..+..
T Consensus 155 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 344444555555555554 344444444443
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.33 E-value=12 Score=39.40 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHH--HHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPD--SIACSALMRAFNKGGQPSKVLLVAEFMRE---QDITFSDS--IFF 691 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~--~~~ 691 (846)
++..++..|.+.|++++|.+.|.++...-..+. ...+..+++.+...+++..+...++++.. .+..++.. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556677777788888888888887776322222 44666677777777777777777777654 22222211 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHhh
Q 003122 692 EMVLACSLLRDWKTTIDLIKQM 713 (846)
Q Consensus 692 ~l~~~~~~~g~~~~A~~~~~~~ 713 (846)
+.+..+...+++.+|-..|-.+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2233344556666665555444
No 262
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.27 E-value=44 Score=32.90 Aligned_cols=167 Identities=9% Similarity=0.017 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHH
Q 003122 549 TYTVLISSCCRLSRYSEALGFLDEMMDLKIPLTNQVYSSVISAYSKQGLIAEAESM----FNMMKMSGCSPDVITYTAML 624 (846)
Q Consensus 549 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~p~~~~~~~l~ 624 (846)
.|.++..-|.+.+++++|++++..-.. .+.+.|+...|-.+ .+-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345566668889999999988765432 35566776666554 44455567888988888888
Q ss_pred HHHHhcCCHH-HHHHHHHHHHH----CCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003122 625 HAYNTAEDWE-KACALFLEMET----NNI--EPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLAC 697 (846)
Q Consensus 625 ~~~~~~g~~~-~A~~~~~~~~~----~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 697 (846)
..+.....-+ .=.++.+++++ .|- .-|+.....++..|.+.|++.+|...|-. +-..+...+..++.-.
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 8876533222 22455555553 322 23678888999999999999998887651 2111344554444333
Q ss_pred Hhc---CCHHHHHHHHHhhccCCCccchhhHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 698 SLL---RDWKTTIDLIKQMEPSFHVVSIGLLN-QLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 698 ~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
... |...+ .+.+. ..+-.|.-.|++..|..+++...+
T Consensus 176 ~~~~~~~~~~e----------------~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 176 LCQVDDIEDST----------------VAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHTTCCCHHH----------------HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHhcCCCCcch----------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 332 33222 22221 111224467899999998887765
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=80.03 E-value=76 Score=34.88 Aligned_cols=201 Identities=9% Similarity=0.027 Sum_probs=112.8
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003122 561 SRYSEALGFLDEMMDLKIPLTNQVYSSVIS----AYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKA 636 (846)
Q Consensus 561 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 636 (846)
.+.+.|...+....+.. ..+......+-. .+...+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 47899999998887543 234433332222 333345355677777766553 23433333444445577999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccC
Q 003122 637 CALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPS 716 (846)
Q Consensus 637 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 716 (846)
...|+.|.... ........-+.+++...|+.++|..+|+.+... . +|+.++ +..+.|..-. . .....
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~l-Aa~~Lg~~~~-~----~~~~~ 371 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMV-AAQRIGEEYE-L----KIDKA 371 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHH-HHHHTTCCCC-C----CCCCC
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHH-HHHHcCCCCC-C----CCCCC
Confidence 99999987531 123444556777888999999999999999752 1 233322 2222332100 0 00000
Q ss_pred CCccc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003122 717 FHVVS----IGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVL 780 (846)
Q Consensus 717 ~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 780 (846)
.+... ...-...+..+...|....|...+..+.+. .+......++......|.+..++...
T Consensus 372 ~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 00000 001123345677788888888888877752 22333334555556677776666544
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.57 E-value=13 Score=29.24 Aligned_cols=63 Identities=11% Similarity=0.238 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 003122 210 QWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLS 273 (846)
Q Consensus 210 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 273 (846)
+.-+..+-++.+...+..|++.+..+.+++|.+.+++..|.++|+-++..- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344666677777777788888888888888888888888888888776542 223345666654
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.63 E-value=15 Score=38.59 Aligned_cols=60 Identities=10% Similarity=-0.030 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 585 YSSVISAYSKQGLIAEAESMFNMMKMSGCSPD--VITYTAMLHAYNTAEDWEKACALFLEME 644 (846)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (846)
...+++.|.+.|+++.|.+.|.++......+. ...+-.++..+...+++..|...+.++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34445555555555555555555544211111 3444455555555555555555555543
No 266
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.32 E-value=23 Score=27.81 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 602 ESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEME 644 (846)
Q Consensus 602 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (846)
.+-++.+...++.|++.+..+.+.+|.+.+++.-|+++|+-..
T Consensus 30 rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 30 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333333344444444444444444444444444444443
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.60 E-value=80 Score=32.31 Aligned_cols=296 Identities=13% Similarity=0.033 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--ccCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHHH-
Q 003122 477 IVSICTLLAACGRCGRKVNIDAVLLAAEMR--DI--KLNTVAYNSAIGSYMNV-GEYEKAIALYKCMKKRKVMPDSVTY- 550 (846)
Q Consensus 477 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~- 550 (846)
......|...|.+.|+.++...++.....- .+ .-.......+++.+... +..+.-+++..+..+... .+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 356778888999999999999888766432 11 11233466777777664 445555555555543210 011122
Q ss_pred -----HHHHHHHHhcCCHhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHH
Q 003122 551 -----TVLISSCCRLSRYSEALGFLDEMMDL--KIPLT---NQVYSSVISAYSKQGLIAEAESMFNMMKMS--GCSPDVI 618 (846)
Q Consensus 551 -----~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~ 618 (846)
..++..|...|++.+|..++.++.+. ..... ..++..-+..|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25788899999999999999998863 11111 245666778899999999999999888652 2223433
Q ss_pred HH----HHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCC
Q 003122 619 TY----TAMLHAYN-TAEDWEKACALFLEMETNNIEPD------SIACSALMRAFNKGGQPSKVLLVAE-FMREQDITFS 686 (846)
Q Consensus 619 ~~----~~l~~~~~-~~g~~~~A~~~~~~~~~~g~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~ 686 (846)
.. ..-+-.+. ..++|.+|...|-+..+.--..+ ...|..|. -.-.++..+--.++. .....-..|.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~--aLl~~~r~el~~~l~~~~~~~~~~pe 255 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC--KIMLGQSDDVNQLVSGKLAITYSGRD 255 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--HHHTTCGGGHHHHHHSHHHHTTCSHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHcCCHHHHHHHhccccccccCCcc
Confidence 22 22333466 78999999999888764101111 11232222 222344444433332 2111112233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-CHHHHHHHHH
Q 003122 687 DSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEA-NFNTYSILLK 765 (846)
Q Consensus 687 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 765 (846)
...+..++.+ ...+++.+...+++........ ++.....+-..+. .--...+.++ ..| ...+...++.
T Consensus 256 i~~l~~L~~a-~~~~dl~~f~~iL~~~~~~l~~-D~~l~~h~~~L~~-----~Ir~~~L~~i----~~pYsrIsl~~iA~ 324 (394)
T 3txn_A 256 IDAMKSVAEA-SHKRSLADFQAALKEYKKELAE-DVIVQAHLGTLYD-----TMLEQNLCRI----IEPYSRVQVAHVAE 324 (394)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHSTTTTTT-SHHHHHHHHHHHH-----HHHHHHHHHH----HTTCSEEEHHHHHH
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHH-----HHHHHHHHHH----hHhhceeeHHHHHH
Confidence 3334444443 4566777777777765433222 3221111111110 0001111222 234 3345555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC
Q 003122 766 NLLAAGNWRKYIEVLQWMEDAGI 788 (846)
Q Consensus 766 ~~~~~g~~~~A~~~~~~~~~~g~ 788 (846)
.+. . ..+++...+-+|+..|.
T Consensus 325 ~l~-l-s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 325 SIQ-L-PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHT-C-CHHHHHHHHHHHHHTTS
T ss_pred HHC-c-CHHHHHHHHHHHHHCCC
Confidence 443 2 56788888888877653
No 268
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.49 E-value=71 Score=31.68 Aligned_cols=165 Identities=12% Similarity=0.085 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHhcCCHHHHHHH----HHHHhhCCCCCCHHHHHHHHHH
Q 003122 481 CTLLAACGRCGRKVNIDAVLLAAEMRDIKLNTVAYNSAIGSYMNVGEYEKAIAL----YKCMKKRKVMPDSVTYTVLISS 556 (846)
Q Consensus 481 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~~~~~~~~p~~~~~~~li~~ 556 (846)
.++..-|.+.+++++|.+++..-. ..+.+.|+...|.++ ++...+.++++|......++..
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344445556666666665543221 123444555444333 2334445566666666666666
Q ss_pred HHhcCCHh-HHHHHHHHHHH----C--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003122 557 CCRLSRYS-EALGFLDEMMD----L--KIPLTNQVYSSVISAYSKQGLIAEAESMFNMMKMSGCSPDVITYTAMLHAYNT 629 (846)
Q Consensus 557 ~~~~g~~~-~A~~~~~~~~~----~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 629 (846)
+.....-+ +=..+.+.+++ . ....+......++..|.+.+++.+|...|- . |..+....+..++.-+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHH
Confidence 55444311 11223333331 1 234567777788888888888888877762 2 222333555444433333
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003122 630 AEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMR 679 (846)
Q Consensus 630 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (846)
.+... .+|..+-.+++ -|.-.++...|..+++...
T Consensus 180 ~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 180 QDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp TSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred hcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 22211 12222222233 2445677777777665554
No 269
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.98 E-value=13 Score=32.48 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 003122 739 ESMMKLFFKIVSSGAEANF-NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSFAQT 804 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 804 (846)
+.+..+|..+...|+--.. .-|...+..|...|++.+|.++|+..++.+-+|-...-.....|..+
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R 143 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQAR 143 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 3477788888887777654 47778888899999999999999999998888876655444444433
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.48 E-value=24 Score=29.35 Aligned_cols=62 Identities=11% Similarity=0.235 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 003122 211 WRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDLVTHNIVLS 273 (846)
Q Consensus 211 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 273 (846)
.-+..+-++.+...++.|++.+....+++|.+.+++..|.++|+-++.+ +.+....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3456666677777778888888888888888888888888888877654 2233445666654
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=68.67 E-value=43 Score=30.32 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=35.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003122 595 QGLIAEAESMFNMMKMSGCSPD-VITYTAMLHAYNTAEDWEKACALFLEMETNNIEP 650 (846)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 650 (846)
+++..++..+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3445667777777776655443 5556666666666777777777777777665555
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.75 E-value=38 Score=28.20 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 601 AESMFNMMKMSGCSPDVITYTAMLHAYNTAEDWEKACALFLEMET 645 (846)
Q Consensus 601 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (846)
..+-++.+...++.|++.+....+.+|.+.+++.-|+++|+-...
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333344444444455555555555555555555555555555443
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.21 E-value=26 Score=30.15 Aligned_cols=63 Identities=17% Similarity=0.131 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 003122 739 ESMMKLFFKIVSSGAEAN-FNTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYGMFRDIVSF 801 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 801 (846)
+++..+|.-+...|+--. ..-|...+..+...|++++|.++|+..++.+-+|-...-.....|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F 145 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLF 145 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 347888888888777665 447778888899999999999999999888777755544444343
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.77 E-value=68 Score=27.52 Aligned_cols=50 Identities=12% Similarity=-0.031 Sum_probs=26.2
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003122 636 ACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITF 685 (846)
Q Consensus 636 A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 685 (846)
+..+|..|...|+-.. +..|......+...|++.+|.++|+..++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5555555555544333 3344455555555555555555555555554444
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=57.72 E-value=1.6e+02 Score=29.56 Aligned_cols=63 Identities=6% Similarity=0.187 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCC
Q 003122 303 HNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQ--IENCKGVFNTMLAEGL 368 (846)
Q Consensus 303 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 368 (846)
.+.++.-|...|+.++|...++++.. +.+ -..++...+..++-+.++ .+....++..+...|+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~--p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV--PHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC--TTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC--Ccc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 34556666666777777777766642 111 123333444444433322 3345555555555543
No 276
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=57.65 E-value=97 Score=27.02 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCCcCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHC
Q 003122 743 KLFFKIVSSGAEANFNTYSIL--LKNLLAAGNWRKYIEVLQWMEDA 786 (846)
Q Consensus 743 ~~~~~~~~~g~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~ 786 (846)
+..++... .-|...+|..- +..|...|..++...+|..++..
T Consensus 194 ~~ikkY~n--~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~k 237 (242)
T 3kae_A 194 SLVKKYME--HVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRK 237 (242)
T ss_dssp HHHHHHHT--STTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhc
Confidence 34455555 67877766533 44588888888888888777653
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=57.09 E-value=51 Score=25.78 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003122 139 AINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIF 218 (846)
Q Consensus 139 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 218 (846)
..++|.-+-+|+-.... ...+--.-+..+...|++++|..+.+... .||...|-+|.. .+.|..+++..-+
T Consensus 22 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 55788888888876542 22222223445667788888887766554 577777766654 4667777777666
Q ss_pred HHHHHcC
Q 003122 219 DDMLRAA 225 (846)
Q Consensus 219 ~~~~~~g 225 (846)
..+-..|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6665554
No 278
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=56.20 E-value=2.4e+02 Score=31.12 Aligned_cols=26 Identities=15% Similarity=0.403 Sum_probs=19.0
Q ss_pred HHHHHHHH---H--HHhcCCHHHHHHHHHHH
Q 003122 758 NTYSILLK---N--LLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 758 ~~~~~l~~---~--~~~~g~~~~A~~~~~~~ 783 (846)
.++..|.. . ++..|+|++|++.++++
T Consensus 534 ~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 534 EICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 35555543 3 58899999999888876
No 279
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=56.09 E-value=63 Score=24.37 Aligned_cols=32 Identities=19% Similarity=0.024 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 738 IESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.+.|..++.++++ +-+.|++++|+.+|+..++
T Consensus 16 ~~~Ai~lv~~Ave----------------~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 16 EEMARKYAINAVK----------------ADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------------HHHhccHHHHHHHHHHHHH
Confidence 3566666666655 4567788888777777654
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.25 E-value=31 Score=31.84 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003122 739 ESMMKLFFKIVSSGAEANF-NTYSILLKNLLAAGNWRKYIEVLQWMEDAGIQPSYG 793 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 793 (846)
+.+..+|.-+...|+--.. .-|...+..|...|++.+|.++|+..++.+-+|-..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 5777888888887777654 477788888999999999999999998887777443
No 281
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=53.01 E-value=50 Score=35.11 Aligned_cols=119 Identities=12% Similarity=0.037 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKIVSSGAEANFNTYSILLKNLL 768 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 768 (846)
.+.++|+.......++.|..+|.++....|. +-..||.|+-.....|+.-+|.-.|-+++.. ..|-..+..+|...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHH
Confidence 5677888888888999999999999999998 6678999999999999999999999998863 4567778888777665
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC--C-HH---hHHHHHHHHHhcCCcchHHHHHHHHHH
Q 003122 769 AAGNWRKYIEVLQWMEDAGIQP--S-YG---MFRDIVSFAQTRGGAEYAAIIQERIES 820 (846)
Q Consensus 769 ~~g~~~~A~~~~~~~~~~g~~p--~-~~---~~~~l~~~~~~~~~~~~a~~~~~~l~~ 820 (846)
+.-+-. ...++ . .. .+..++..+....+.+.-..+.+++..
T Consensus 232 ~~~~~~-----------~~~~~~~~~~~~~~~Fv~lh~~lf~~~~~~~f~~l~~~~~~ 278 (497)
T 1ya0_A 232 KALESR-----------DEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEE 278 (497)
T ss_dssp HHTTSC-----------CCCCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHH
T ss_pred HHHhhh-----------hhccccCChHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 431100 00111 1 11 345555556666666665555554443
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.89 E-value=91 Score=27.15 Aligned_cols=50 Identities=6% Similarity=-0.034 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 003122 636 ACALFLEMETNNIEPD-SIACSALMRAFNKGGQPSKVLLVAEFMREQDITF 685 (846)
Q Consensus 636 A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 685 (846)
+..+|..|...|+-.. +..|......+...|++.+|.++|+..++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4555666665554443 3445555555556666666666666666655444
No 283
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=52.84 E-value=71 Score=24.04 Aligned_cols=31 Identities=13% Similarity=-0.004 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 739 ESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 739 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
+.|..++.++++ +-+.|++++|+.+|+..++
T Consensus 9 ~~Ai~lv~~Ave----------------~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVK----------------ADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------HHHhccHHHHHHHHHHHHH
Confidence 466666666665 4567888888887777654
No 284
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=51.70 E-value=49 Score=25.82 Aligned_cols=78 Identities=12% Similarity=0.059 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003122 139 AINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNIF 218 (846)
Q Consensus 139 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 218 (846)
..++|.-+-+|+-.... ...+--.-+..+...|++++|..+.+... .||...|-+|.. .+.|..+++..-+
T Consensus 21 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 45778888888876541 22222223445567788888877765543 577777766644 5667777777666
Q ss_pred HHHHHcC
Q 003122 219 DDMLRAA 225 (846)
Q Consensus 219 ~~~~~~g 225 (846)
..+-.+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6665554
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.66 E-value=1.4e+02 Score=26.96 Aligned_cols=17 Identities=18% Similarity=-0.077 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHHhcCC
Q 003122 581 TNQVYSSVISAYSKQGL 597 (846)
Q Consensus 581 ~~~~~~~l~~~~~~~g~ 597 (846)
+..+-...+.++...|+
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 33333344444444433
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.44 E-value=1.4e+02 Score=31.66 Aligned_cols=67 Identities=9% Similarity=-0.062 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH--HHHH-HHHHHHHhcCChhHHHHHHHHHHHCCC
Q 003122 617 VITYTAMLHAYNTAEDWEKACALFLEMETN-NIEPDS--IACS-ALMRAFNKGGQPSKVLLVAEFMREQDI 683 (846)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~--~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (846)
...+|.++..|...+.++.|..+..+..-- ...++. ..|. .++..+.-.+++.+|.+.+..+...-+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 456777777777777777777777776410 001111 1222 344556667777777777777766433
No 287
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=51.24 E-value=86 Score=24.50 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=24.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003122 309 CLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAEG 367 (846)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 367 (846)
.+...|++++|..+.+.. +.||...|.+|.. .+.|--+++..-+.++..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~------c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN------PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC------CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCC------CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344555555555544322 2355555554443 24455555555444444443
No 288
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=50.36 E-value=89 Score=24.45 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=21.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003122 310 LVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQIENCKGVFNTMLAE 366 (846)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (846)
+...|++++|..+.+.. +.||...|.+|... +.|--+++..-+.++..+
T Consensus 50 LmNrG~Yq~Al~l~~~~------c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL------AYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTS------CCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCC------CCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 44455555555444322 23455555444332 344444444444444433
No 289
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=47.07 E-value=2.1e+02 Score=29.67 Aligned_cols=120 Identities=12% Similarity=0.087 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003122 619 TYTAMLHAYNTAEDWEKACALFLEMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACS 698 (846)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 698 (846)
.|..-.+.+...|++++|.++--.... |+--+..|.+.+-.+=..-|+..--+.+|..+++.| +.+..--..++..-.
T Consensus 363 L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL 440 (494)
T 1bpo_A 363 LFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVL 440 (494)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHH
Confidence 344444455555666666555444332 233344444443333333444555555566555554 223333334445555
Q ss_pred hcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 699 LLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLFFKI 748 (846)
Q Consensus 699 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 748 (846)
.+|+.+-...++++-+-.... .|++.. +..+..-|..+|.++
T Consensus 441 ~q~r~~llekWl~e~KL~~SE-------eLGDlv-k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 441 QQGRKQLLEKWLKEDKLECSE-------ELGDLV-KSVDPTLALSVYLRA 482 (494)
T ss_dssp HTTCHHHHHHHHHHTCSCCCH-------HHHHHH-HHHCSHHHHHHHHHH
T ss_pred hccHHHHHHHHHhcCCccccH-------HhHhhh-hhcCHHHHHHHHHHc
Confidence 566666666666554322222 344433 223445555555544
No 290
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=44.84 E-value=1e+02 Score=23.75 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 737 RIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 737 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
.++.|..++.++++ .-+.|++++|+.+|...++
T Consensus 11 ~l~~Ai~lv~~Ave----------------~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 11 DSTAAVAVLKRAVE----------------LDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------------HHHhCCHHHHHHHHHHHHH
Confidence 44566666666665 4456777777766666544
No 291
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.84 E-value=1.3e+02 Score=29.58 Aligned_cols=64 Identities=8% Similarity=0.177 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 003122 303 HNIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQ--IENCKGVFNTMLAEGLK 369 (846)
Q Consensus 303 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 369 (846)
...++.-|...|+.++|...++++.. +.+ -...+...+..++-+.++ .+....++..+...|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~--p~f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEV--PHF-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC--GGG-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC--Ccc-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 34566667777888888888877742 111 123334444444444322 34455666666655543
No 292
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.43 E-value=1.2e+02 Score=30.48 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC---HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 003122 726 NQLLHLLGKSGRIESMMKLFFKIVSSGAEAN---FNTYSILLKNLLAAGN--WRKYIEVLQWMEDAGIQPSYGMFRDIVS 800 (846)
Q Consensus 726 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 800 (846)
..++.-|...|+.++|.+.++++-. |. ..++..+..++-+.+. .+....++..+...|+-+..........
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~----p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccC----CcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 3667777788888888888887753 32 2244444445555433 3456677777777776665555444433
Q ss_pred HHHh----cCCcchHHHHHHHHH
Q 003122 801 FAQT----RGGAEYAAIIQERIE 819 (846)
Q Consensus 801 ~~~~----~~~~~~a~~~~~~l~ 819 (846)
.+.. .-+.|.|..+..++.
T Consensus 297 vl~~ldDl~lDiP~A~~~la~~v 319 (358)
T 3eiq_C 297 IYNEIPDINLDVPHSYSVLERFV 319 (358)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHhccHhhcccccHHHHHHHHH
Confidence 3322 224566666555443
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.88 E-value=1.6e+02 Score=27.52 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 283 KALSYFELMKGTNIRPDTTTHNIVIYCLVKLGQYDKAIDLFHSMR 327 (846)
Q Consensus 283 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 327 (846)
-+..+.+++.. .++.......+..+.+.|+.++|.++|-+..
T Consensus 77 L~~~L~~~l~~---~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 77 ISSKLSQSILS---SNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHHT---CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 33444444422 3455566666777788888888888876554
No 294
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=36.98 E-value=3.2e+02 Score=27.75 Aligned_cols=125 Identities=9% Similarity=-0.006 Sum_probs=65.8
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 003122 666 GQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGKSGRIESMMKLF 745 (846)
Q Consensus 666 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 745 (846)
.++..|+.-+-.+.+..+.|....... -+.+|+..-++...... +.-|..++..+.+++++.+|.+.+
T Consensus 259 ~~YPmALgnLgDLEei~pt~grp~~~~---------Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~w 326 (489)
T 4gq4_A 259 ERYPMALGNLADLEELEPTPGRPDPLT---------LYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAW 326 (489)
T ss_dssp TTCHHHHHHHHHHHHHSCCTTSCCHHH---------HHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcchhhhcccCHhhcCCCCCCCCHHH---------HHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHh
Confidence 345566666666665444332211111 13555655555443332 345777888888999999999998
Q ss_pred HHHHhc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHhHHHHHHHHHh
Q 003122 746 FKIVSS----GAEA-NFNTYSILLKNLLAAGNWRKYIEVLQWMED----AGIQPSYGMFRDIVSFAQT 804 (846)
Q Consensus 746 ~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~~~~~~l~~~~~~ 804 (846)
.++... .... |...|..+..+--.. ...-+..-.+..+ .++-.|+.++.+++.|+.+
T Consensus 327 a~aa~Vi~~YnY~reDeEiYke~~eIanel--ip~~lk~~~~~~~~~~~~~~l~dp~c~a~lL~fyDg 392 (489)
T 4gq4_A 327 ADTATVIQDYNYCREDEEIYKEFFEVANDV--IPNLLKEAASLLEAGSQGSALQDPECFAHLLRFYDG 392 (489)
T ss_dssp HHHHHHHTTSCCCTTCHHHHHHHHHHHHTH--HHHHHHHHHHHHHTTCSSCGGGCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccchHHHHHHHHHHHHHh--hhHHHHHhhhcccccccccCCCCcchhhhhccccCC
Confidence 887541 1222 556776665432110 0000000011111 2344678888888777654
No 295
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=36.91 E-value=1.5e+02 Score=31.48 Aligned_cols=79 Identities=14% Similarity=-0.055 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 003122 654 ACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLG 733 (846)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 733 (846)
....|++...-...++.|..+|.++....|. +...|+.++-.....|+.-+|+-.|-+....... ...+..+|...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P-f~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP-FPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC-CHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC-ChhHHHHHHHHHH
Confidence 4445666666677889999999999998777 7789999999999999998988887776544332 5667777777665
Q ss_pred h
Q 003122 734 K 734 (846)
Q Consensus 734 ~ 734 (846)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.74 E-value=1.7e+02 Score=27.21 Aligned_cols=89 Identities=10% Similarity=0.022 Sum_probs=43.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhh--CCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003122 166 MIRLHARHNQIDKARGLFFEMQK--WRCKP----DAETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINA 239 (846)
Q Consensus 166 li~~~~~~g~~~~A~~~~~~~~~--~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 239 (846)
-++++....++++|.+++++..+ .+.+. +...-...+..-.....-.-+..+.+.+.. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 35666777777888777776553 11111 011112222222222222333333333322 3345555566666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 003122 240 CGSTGNWREALKVCKKMT 257 (846)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~ 257 (846)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777665554
No 297
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=36.63 E-value=50 Score=31.61 Aligned_cols=17 Identities=12% Similarity=0.284 Sum_probs=7.7
Q ss_pred HHHHHHcCCHHHHHHHH
Q 003122 167 IRLHARHNQIDKARGLF 183 (846)
Q Consensus 167 i~~~~~~g~~~~A~~~~ 183 (846)
+...++.|+++....++
T Consensus 9 L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33344455554444443
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.17 E-value=85 Score=33.28 Aligned_cols=62 Identities=10% Similarity=0.032 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhccCCC-ccc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 689 IFFEMVLACSLLRDWKTTIDLIKQMEPSFH-VVS---IGLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 689 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
.++.++..|...+.+++|..++.+..-... ..+ ...+..+|..+.-.+++.+|.+.+..++.
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345555555555555555555555431111 001 12223345555555555555555555554
No 299
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=34.88 E-value=2.3e+02 Score=24.74 Aligned_cols=26 Identities=15% Similarity=-0.147 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003122 759 TYSILLKNLLAAGNWRKYIEVLQWME 784 (846)
Q Consensus 759 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 784 (846)
.|+.++..+...|+.+||+..+..--
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 67777888999999999999887654
No 300
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=34.79 E-value=3.7e+02 Score=27.27 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 758 NTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
-.|..++..|++.+++.+|+..|-.+
T Consensus 319 YPYtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 319 YPYMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cceeecchhhhhcchHHHHHHHHHHH
Confidence 35666677777777777777766554
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=33.87 E-value=87 Score=28.92 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=14.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003122 237 INACGSTGNWREALKVCKKMTENGVGP 263 (846)
Q Consensus 237 l~~~~~~g~~~~A~~~~~~~~~~g~~~ 263 (846)
+...+..|+.+.+..+++.+.+.|..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 334455566666666666555554433
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.54 E-value=2e+02 Score=26.40 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003122 177 DKARGLFFEMQKWRCKPD-AETYNALISAHGRAGQWRWAMNIFDDMLRAAVAPSR 230 (846)
Q Consensus 177 ~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 230 (846)
+++.++|..|...|+-.. ..-|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 577889999988776655 566777888888899999999999998887766643
No 303
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=32.70 E-value=1e+02 Score=29.34 Aligned_cols=21 Identities=5% Similarity=0.056 Sum_probs=9.4
Q ss_pred cCChHHHHHHHHHHHHCCCCc
Q 003122 420 SQQPVKAREVFNMMRINNLKP 440 (846)
Q Consensus 420 ~g~~~~A~~~~~~m~~~~~~~ 440 (846)
.++.....++++.+.+.|..+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCS
T ss_pred ccccchHHHHHHHHHHcCCCC
Confidence 344333344445555554433
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.19 E-value=2.4e+02 Score=32.97 Aligned_cols=135 Identities=11% Similarity=0.030 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003122 126 NFPFLIKEITQRGAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAH 205 (846)
Q Consensus 126 ~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 205 (846)
....++..|...|.++.|.++..|+. .++..-..+.++|...|++++|.++|.++-. |+..+.....
T Consensus 812 ~~~~l~~~L~~~~~~~~a~eL~~~~~------~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~------ 878 (950)
T 4gq2_M 812 LVTELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFA------ 878 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHGGGCC------SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCG------
T ss_pred cHHHHHHHHHHhcHHHHHHHHHhhcC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCccccc------
Confidence 34567788888898888887776654 3344446788999999999999999987653 2221110000
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHcCC
Q 003122 206 GRAGQWRWAMNIFDDMLRAAVAPSRSTYNNLINACGSTGNWREALKVCKKMTENGVGPDL----VTHNIVLSAYKNGA 279 (846)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g 279 (846)
..+....++.... . ......-|..++..+-+.+-++.+.++-+...+.--.-|. ..|+.+.++.+..|
T Consensus 879 ----~~~~~~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 879 ----VLREFQEIAEKYH-H-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp ----GGHHHHHHHHHTT-T-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ----chhhhhhccCccc-c-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0001111111100 0 0112235778888888888888888888777764222232 35666666665443
No 305
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.46 E-value=2.3e+02 Score=27.74 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcC---HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 003122 726 NQLLHLLGKSGRIESMMKLFFKIVSSGAEAN---FNTYSILLKNLLAAGN--WRKYIEVLQWMEDAGIQPSYGMFRDIVS 800 (846)
Q Consensus 726 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 800 (846)
..++.-|...|+.++|.+.++++-. |. ..++..+..++-+.+. .+....++..+.+.|+-+.......+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~----p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~ 245 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYER 245 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCC----GGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC----CcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4677778888999999999888753 42 1244444444554433 3446677888877776665554443333
Q ss_pred HHHh----cCCcchHHHHHHHHH
Q 003122 801 FAQT----RGGAEYAAIIQERIE 819 (846)
Q Consensus 801 ~~~~----~~~~~~a~~~~~~l~ 819 (846)
.+.. .-+.|.|..+..++-
T Consensus 246 vl~~l~Dl~lDiP~A~~~la~~v 268 (307)
T 2zu6_B 246 IYNEIPDINLDVPHSYSVLERFV 268 (307)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHhccHhhcccccHHHHHHHHH
Confidence 3322 224566666655443
No 306
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=30.33 E-value=1.9e+02 Score=23.39 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003122 738 IESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 738 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 785 (846)
++.|+.++.++++ .-..|++++|+.+|...++
T Consensus 15 l~kAi~lv~~Ave----------------~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 15 LQKAIDLASKAAQ----------------EDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHH----------------HHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------------HHHccCHHHHHHHHHHHHH
Confidence 3566666666654 3455777777777766654
No 307
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=27.97 E-value=4.4e+02 Score=25.82 Aligned_cols=50 Identities=8% Similarity=-0.043 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003122 598 IAEAESMFNMMKMSGCSPD--VITYTAMLHAYNTAEDWEKACALFLEMETNN 647 (846)
Q Consensus 598 ~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 647 (846)
..+..++--.+....+.|. .-+...-+....+.+++..|-.+-+++++.+
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444444444444444443 3345555666778888888888888888843
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=27.55 E-value=3e+02 Score=32.18 Aligned_cols=28 Identities=7% Similarity=-0.075 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003122 723 GLLNQLLHLLGKSGRIESMMKLFFKIVS 750 (846)
Q Consensus 723 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 750 (846)
..|..++..+.+.+-++-+++..+.+++
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3566666666666777777777666665
No 309
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=27.31 E-value=2e+02 Score=21.59 Aligned_cols=19 Identities=16% Similarity=-0.024 Sum_probs=12.1
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003122 767 LLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~ 785 (846)
.-..|++++|+.+|....+
T Consensus 23 ~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 23 LDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3456777777777666654
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.08 E-value=2.2e+02 Score=24.32 Aligned_cols=65 Identities=11% Similarity=0.256 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 003122 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQ--WRWAMNIFDDMLRAAVAP 228 (846)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~~~ 228 (846)
.+.++.-|...|+.++|...++++.... ........++..++-+.+. .+.+..++..+.+.|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4556666666677777777777664210 1112333334444444221 344555666665555443
No 311
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=25.72 E-value=2.2e+02 Score=21.54 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=12.9
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003122 767 LLAAGNWRKYIEVLQWMED 785 (846)
Q Consensus 767 ~~~~g~~~~A~~~~~~~~~ 785 (846)
+-..|++++|+.+|...++
T Consensus 26 ~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 26 LDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4566777777777776654
No 312
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.65 E-value=2.3e+02 Score=23.35 Aligned_cols=62 Identities=6% Similarity=0.196 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCC
Q 003122 304 NIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQ--IENCKGVFNTMLAEGL 368 (846)
Q Consensus 304 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 368 (846)
..++.-|...|+.++|...++++... .+ ....+...+..++-+.+. .+.+..++..+...|+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p--~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVP--HF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG--GG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC--cc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 34556666667777777777766421 10 122333334444443321 3445555555555543
No 313
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.65 E-value=2.8e+02 Score=22.81 Aligned_cols=66 Identities=11% Similarity=0.243 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCC
Q 003122 163 YNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQ--WRWAMNIFDDMLRAAVAPS 229 (846)
Q Consensus 163 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~g~~~~ 229 (846)
...++.-|...|+.++|...++++.... ........++..++-+.+. .+....++..+.+.|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4456666666677777777776664210 1112333334444444321 3445566666655554433
No 314
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.49 E-value=3e+02 Score=23.08 Aligned_cols=60 Identities=3% Similarity=-0.056 Sum_probs=39.6
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 642 EMETNNIEPDSIACSALMRAFNKGGQPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRD 702 (846)
Q Consensus 642 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 702 (846)
.+.+.|+..+..- ..++..+...+..-.|.++++.+.+.++..+..+.+..+..+...|-
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3555677666432 23445555566677788888888877777777777777776666663
No 315
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=23.24 E-value=6e+02 Score=25.79 Aligned_cols=97 Identities=10% Similarity=0.009 Sum_probs=51.1
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 003122 658 LMRAFNKGG---QPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRDWKTTIDLIKQMEPSFHVVSIGLLNQLLHLLGK 734 (846)
Q Consensus 658 l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 734 (846)
|+..+...| ++..|+.-+-.+.+..+.|....-..+ +.+|+..-+...... .+.-|..++..+++
T Consensus 263 LLWlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~~~~~L---------~~~AI~sa~~~Y~n~---HvYPYtYlgGy~yR 330 (550)
T 3u84_A 263 LLWLLYDLGHLERYPMALGNLADLEELEPTPGRPDPLTL---------YHKGIASAKTYYRDE---HIYPYMYLAGYHCR 330 (550)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCCCHHHH---------HHHHHHHHHHHSTTC---CSHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhCchhhcchhhHhhcCCCCCCCCHHHH---------HHHHHHHHHHHhccC---Cccceeecchhhhh
Confidence 444444444 445566666666664443332111000 234444444443332 23446677778888
Q ss_pred cCCHHHHHHHHHHHHhc----CCCc-CHHHHHHHHHH
Q 003122 735 SGRIESMMKLFFKIVSS----GAEA-NFNTYSILLKN 766 (846)
Q Consensus 735 ~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~ 766 (846)
++++.+|.+.+.++... +..- |..+|..+..+
T Consensus 331 ~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 367 (550)
T 3u84_A 331 NRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 367 (550)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 88888888888776431 2222 55566665543
No 316
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=22.98 E-value=1.3e+02 Score=21.31 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 003122 162 IYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRA 208 (846)
Q Consensus 162 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 208 (846)
.++.++..+++..-++++...++++.+.| ..+..+|.--++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 45666777777777777777777777766 56666776666666554
No 317
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.64 E-value=72 Score=29.39 Aligned_cols=6 Identities=17% Similarity=0.174 Sum_probs=2.5
Q ss_pred hcCCHH
Q 003122 384 SHGMSK 389 (846)
Q Consensus 384 ~~g~~~ 389 (846)
..|..+
T Consensus 186 ~~~~~~ 191 (240)
T 3eu9_A 186 LAGNTT 191 (240)
T ss_dssp HHTCHH
T ss_pred HcCCHH
Confidence 444443
No 318
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.31 E-value=3.6e+02 Score=26.80 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003122 758 NTYSILLKNLLAAGNWRKYIEVLQWM 783 (846)
Q Consensus 758 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 783 (846)
-.|..++..|++.+++.||+..+-.+
T Consensus 297 YPYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 297 YPYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhcchHHHHHHHHHHH
Confidence 36666777777888888887777655
No 319
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.17 E-value=3.7e+02 Score=23.17 Aligned_cols=50 Identities=18% Similarity=0.056 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 003122 596 GLIAEAESMFNMMKMSGCSP--DVITYTAMLH-A-----YNTAEDWEKACALFLEMET 645 (846)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 645 (846)
|++-+|.++++.+-.....+ ....|..||. . ..+.|+..-|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666666666655432223 2334444444 1 2345666666666665543
No 320
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.83 E-value=3.2e+02 Score=22.62 Aligned_cols=59 Identities=3% Similarity=0.004 Sum_probs=38.7
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003122 643 METNNIEPDSIACSALMRAFNKGG-QPSKVLLVAEFMREQDITFSDSIFFEMVLACSLLRD 702 (846)
Q Consensus 643 ~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 702 (846)
+.+.|+.++..- ..++..+...+ ..-.|.++++.+.+.++..+..+.+..+..+...|-
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 455677666533 23455555555 677788888888887777777777776666666653
No 321
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.82 E-value=4.5e+02 Score=23.82 Aligned_cols=79 Identities=10% Similarity=0.116 Sum_probs=51.5
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCCHHhHHH
Q 003122 726 NQLLHLLGK---SGRIESMMKLFFKIVSSGAEANFNTYSILLKNLLAAGNW-----RKYIEVLQWMEDAGIQPSYGMFRD 797 (846)
Q Consensus 726 ~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~g~~p~~~~~~~ 797 (846)
..++.++.+ -++.+.|+-.+-+|++.|.+|....-..+.-+....|.- .-|...++.....|..--....-.
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laq 115 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQ 115 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 345555543 468899999999999988888888777777778877763 345566676666675333333333
Q ss_pred HHHHHHh
Q 003122 798 IVSFAQT 804 (846)
Q Consensus 798 l~~~~~~ 804 (846)
....++.
T Consensus 116 aviyLA~ 122 (213)
T 3ctd_A 116 ASLYLAI 122 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 3333333
No 322
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=21.61 E-value=5e+02 Score=24.31 Aligned_cols=82 Identities=13% Similarity=-0.063 Sum_probs=33.3
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003122 405 PDIVSYTSLLNAYGRSQQPVKAREVFNMMRINNLKPNLVSYSALIDAYGSNG-LLAEAVEVFREMEQDGIEPNIVSICTL 483 (846)
Q Consensus 405 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~l 483 (846)
++..+-...+.++...|+.+ +...+..+.. .++...-...+.++...| ....+...+..+.+ .++..+-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHH
Confidence 45555455555555555422 3333333333 233333333333333322 12344444444443 2444444455
Q ss_pred HHHHHhcCCH
Q 003122 484 LAACGRCGRK 493 (846)
Q Consensus 484 l~~~~~~g~~ 493 (846)
+.++.+.|+.
T Consensus 213 ~~aL~~~~~~ 222 (280)
T 1oyz_A 213 IIGLSYRKDK 222 (280)
T ss_dssp HHHHHHTTCG
T ss_pred HHHHHHhCCH
Confidence 5555555543
No 323
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=21.10 E-value=5.9e+02 Score=26.47 Aligned_cols=109 Identities=11% Similarity=0.051 Sum_probs=66.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003122 138 GAINHSNQVFNWMKNQKNYCARNDIYNMMIRLHARHNQIDKARGLFFEMQKWRCKPDAETYNALISAHGRAGQWRWAMNI 217 (846)
Q Consensus 138 g~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 217 (846)
.+.+.|+.+-. +.+++-..+.|....+.+...|++++|..+--..+. |+-.+..|.+.+-.+=..-|+..--+..
T Consensus 343 ~n~~lA~~lA~----R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 343 QNPDLALRMAV----RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp CCHHHHHHHHH----HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred CCHHHHHHHHH----hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 55555555443 345566667787788889999999999998877765 4556777765555444445666666667
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003122 218 FDDMLRAAVAPSRSTYNNLINACGSTGNWREALKV 252 (846)
Q Consensus 218 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 252 (846)
|.-+.+.| ..+..----+++.....|+.+..++.
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHH
Confidence 77666665 23443333344444444544443333
No 324
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.01 E-value=55 Score=30.94 Aligned_cols=24 Identities=8% Similarity=-0.085 Sum_probs=11.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC
Q 003122 206 GRAGQWRWAMNIFDDMLRAAVAPS 229 (846)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~g~~~~ 229 (846)
++.|+.+....+++.+.+.|...+
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcc
Confidence 344555555555555544444333
No 325
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=20.85 E-value=2.3e+02 Score=23.25 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=15.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHh
Q 003122 131 IKEITQRGAINHSNQVFNWMKN 152 (846)
Q Consensus 131 ~~~~~~~g~~~~A~~~f~~~~~ 152 (846)
+..+...++++++..+.+|+..
T Consensus 67 L~~lVeek~Lek~~~vlk~l~r 88 (124)
T 3vu7_H 67 CTDLIEEKDLEKLDLVIKYMKR 88 (124)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhcccHHHHHHHHHHHHH
Confidence 4445567888888888777654
No 326
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.73 E-value=1.7e+02 Score=28.01 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=5.4
Q ss_pred HhcCCHHHHHHHH
Q 003122 311 VKLGQYDKAIDLF 323 (846)
Q Consensus 311 ~~~g~~~~A~~~~ 323 (846)
+..|+.+-+.-++
T Consensus 103 ~~~g~~~~v~~Ll 115 (285)
T 3kea_A 103 VDSGNMQTVKLFV 115 (285)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3445444333333
No 327
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.39 E-value=3.5e+02 Score=26.38 Aligned_cols=16 Identities=13% Similarity=0.212 Sum_probs=8.2
Q ss_pred HHHHcCCHHHHHHHHH
Q 003122 169 LHARHNQIDKARGLFF 184 (846)
Q Consensus 169 ~~~~~g~~~~A~~~~~ 184 (846)
.-++.|+++-...+++
T Consensus 31 ~Av~~g~~~~V~~LL~ 46 (337)
T 4g8k_A 31 KAVQNEDVDLVQQLLE 46 (337)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3345566655554443
No 328
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.14 E-value=2e+02 Score=24.63 Aligned_cols=62 Identities=6% Similarity=0.201 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCC
Q 003122 304 NIVIYCLVKLGQYDKAIDLFHSMREKRSECLPDIVTFTSIIHLYSVNGQ--IENCKGVFNTMLAEGL 368 (846)
Q Consensus 304 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 368 (846)
..++.-|...|+.++|...++++.. +.+ ...++...+..++-+.++ .+.+..++..+...|+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~--p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEV--PHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC--GGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCC--Ccc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4456666666777777777776632 110 122333334444443222 3345555555555443
Done!