BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003126
         (845 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q02Z22|CLPX_LACLS ATP-dependent Clp protease ATP-binding subunit ClpX OS=Lactococcus
           lactis subsp. cremoris (strain SK11) GN=clpX PE=3 SV=1
          Length = 411

 Score = 36.6 bits (83), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)

Query: 405 SKILDEQREIRELLKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDIT 464
           ++IL+E     EL ++ D   + +   ++ F D L E ++G E                 
Sbjct: 41  TRILEE-----ELKEEQDSEMLEVKTPKEMF-DHLNEYVIGQEK---------------A 79

Query: 465 KNVLIASTYVHLKCNNF--AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522
           K  L  + Y H K  NF  +K A D+      ILL GP GS   +  LA+ LAK  +   
Sbjct: 80  KRALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGSG--KTFLAQTLAKSLNVPF 137

Query: 523 LIVDS 527
            I D+
Sbjct: 138 AIADA 142


>sp|Q8GJP6|CLPX_LACLM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Lactococcus
           lactis subsp. cremoris (strain MG1363) GN=clpX PE=3 SV=1
          Length = 411

 Score = 36.6 bits (83), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 25/125 (20%)

Query: 405 SKILDEQREIRELLKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDIT 464
           ++IL+E     EL ++ D   + +   ++ F D L E ++G E                 
Sbjct: 41  TRILEE-----ELKEEQDSEMLEVKTPKEMF-DHLNEYVIGQEK---------------A 79

Query: 465 KNVLIASTYVHLKCNNF--AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522
           K  L  + Y H K  NF  +K A D+      ILL GP GS   +  LA+ LAK  +   
Sbjct: 80  KRALAVAVYNHYKRINFTASKIAEDIELQKSNILLIGPTGS--GKTFLAQTLAKSLNVPF 137

Query: 523 LIVDS 527
            I D+
Sbjct: 138 AIADA 142


>sp|P19196|INVA_YEREN Invasin OS=Yersinia enterocolitica PE=3 SV=1
          Length = 835

 Score = 35.4 bits (80), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 86/229 (37%), Gaps = 22/229 (9%)

Query: 185 GPSGALLEITGGKGEVEVNGNVHPKD----------SQVVLRGGDE--LVFSPSGKHSYI 232
           G S   L+I G +  V+V   V P D          S +V  G  +  L F P  K++  
Sbjct: 521 GVSVVTLDIQGQQATVDVRFAVLPPDVTNSSFNVSPSDIVADGSMQSILTFVPRNKNNEF 580

Query: 233 FQQLSDDTLAAPGIHPPMSILEAQSAPLKTMHIEARSGDPS---AVAGASILASLSNIQK 289
              ++D      G+   +S +   +       +    GD      V G S    L  +QK
Sbjct: 581 VSGITDLEFIQSGVPVTISPVTENADNYTASVVGNSVGDVDITPQVGGES----LDLLQK 636

Query: 290 DLSLIPPPTKAGVDAQNSEIASLASGCDGPEDRIP-DVDMKDATSNNDDAGSSSRGKTVV 348
            ++L P P   G++    + A+         ++    + M D  +NN     +S      
Sbjct: 637 RITLYPVPKITGINVNGEQFATDKGFPKTTFNKATFQLVMNDDVANNTQYDWTSSYAASA 696

Query: 349 PQSDAANENPNLDSIGLDACVDAEIGKIPG--ATYELRPLLRMLAGSSS 395
           P  +    N    + G    V A+  K P   ATY+ +P L + +G+ S
Sbjct: 697 PVDNQGKVNIAYKTYGSTVTVTAKSKKFPSYTATYQFKPNLWVFSGTMS 745


>sp|Q9CGE6|CLPX_LACLA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Lactococcus
           lactis subsp. lactis (strain IL1403) GN=clpX PE=3 SV=1
          Length = 411

 Score = 34.7 bits (78), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 19/93 (20%)

Query: 437 DSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA--KYASDLPTMCPR 494
           D L E ++G E                 K  L  + Y H K  NFA  K A D+      
Sbjct: 67  DHLNEYVIGQEK---------------AKRALAVAVYNHYKRINFAASKIAEDIELQKSN 111

Query: 495 ILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527
           ILL GP GS   +  LA+ LAK  +    I D+
Sbjct: 112 ILLIGPTGSG--KTFLAQTLAKSLNVPFAIADA 142


>sp|Q4L1M7|HPAH_GEOP9 4-hydroxyphenylacetate 3-monooxygenase oxygenase component
           OS=Geobacillus sp. (strain PA-9) GN=hpaH PE=3 SV=1
          Length = 494

 Score = 33.1 bits (74), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 215 LRGGDELVFSPSGKHSYIFQQLSDDTLAAPGIHPPMS---ILEAQSAPLKTMHIEARSGD 271
           L   D+ +F+ + K+ Y + +  D +L    IHP M+    L  Q+     +H+  R  D
Sbjct: 121 LFAEDDPMFAENAKNYYEYAREHDISLTHTLIHPQMNRAKALHEQNDADVPLHLVERRKD 180

Query: 272 PSAVAGASILASLSNIQKDLSLIPPPTKAGVDAQNSEIASLA 313
              V+G  +LA+   I  ++ + P   K     ++    + A
Sbjct: 181 GIIVSGIRLLATQGGITDEILVFPSTVKKATSGEDPYALAFA 222


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.130    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 316,652,260
Number of Sequences: 539616
Number of extensions: 14121836
Number of successful extensions: 42212
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 194
Number of HSP's that attempted gapping in prelim test: 41598
Number of HSP's gapped (non-prelim): 777
length of query: 845
length of database: 191,569,459
effective HSP length: 126
effective length of query: 719
effective length of database: 123,577,843
effective search space: 88852469117
effective search space used: 88852469117
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)