Query 003126
Match_columns 845
No_of_seqs 125 out of 130
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 14:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gxc_A CHK2, CDS1, serine/thre 99.8 3.4E-19 1.2E-23 169.7 13.2 111 129-240 25-145 (149)
2 1lgp_A Cell cycle checkpoint p 99.7 8.3E-18 2.8E-22 152.9 9.8 105 132-239 2-114 (116)
3 2jqj_A DNA damage response pro 99.6 2.6E-15 8.8E-20 143.2 12.5 109 127-239 11-125 (151)
4 1g6g_A Protein kinase RAD53; b 99.6 2.8E-15 9.6E-20 139.0 12.2 102 131-236 2-120 (127)
5 3i6u_A CDS1, serine/threonine- 99.6 6.7E-15 2.3E-19 156.7 11.8 108 131-239 7-124 (419)
6 4h87_A Kanadaptin; FHA domain 99.5 1.3E-13 4.4E-18 129.5 10.3 86 147-234 35-129 (130)
7 1g3g_A Protien kinase SPK1; FH 99.4 6.7E-13 2.3E-17 128.6 13.1 104 130-237 29-149 (164)
8 2pie_A E3 ubiquitin-protein li 99.4 4.3E-13 1.5E-17 126.2 11.0 104 129-237 5-118 (138)
9 1qu5_A Protein kinase SPK1; FH 99.4 1.4E-12 4.9E-17 128.9 9.3 106 129-235 24-146 (182)
10 1uht_A Expressed protein; FHA 99.3 5.4E-12 1.8E-16 115.2 11.0 94 129-227 7-105 (118)
11 3va4_A Mediator of DNA damage 99.3 4.9E-12 1.7E-16 119.2 10.3 103 128-236 18-126 (132)
12 1dmz_A Protein (protein kinase 99.3 6.5E-12 2.2E-16 121.1 10.6 101 134-235 5-122 (158)
13 2csw_A Ubiquitin ligase protei 99.3 4E-12 1.4E-16 120.7 8.6 103 129-236 13-125 (145)
14 1r21_A Antigen KI-67; beta san 99.3 5.2E-12 1.8E-16 117.0 7.5 100 128-237 6-109 (128)
15 3hx1_A SLR1951 protein; P74513 99.2 1.6E-11 5.5E-16 115.1 9.7 79 146-228 24-109 (131)
16 3els_A PRE-mRNA leakage protei 99.2 1.7E-11 5.8E-16 118.8 10.2 89 146-235 49-157 (158)
17 3po8_A RV0020C protein, putati 99.2 3.9E-11 1.4E-15 106.6 10.8 82 142-234 13-95 (100)
18 2xt9_B Putative signal transdu 99.2 5.6E-11 1.9E-15 108.4 11.9 84 143-237 22-106 (115)
19 2kb3_A Oxoglutarate dehydrogen 99.2 8.1E-11 2.8E-15 112.2 11.5 82 145-237 59-141 (143)
20 2jpe_A Nuclear inhibitor of pr 99.2 1.2E-11 4E-16 116.5 3.9 85 146-234 48-135 (140)
21 3elv_A PRE-mRNA leakage protei 99.1 1.1E-10 3.6E-15 118.2 10.3 81 146-227 96-193 (205)
22 3gqs_A Adenylate cyclase-like 99.1 1.7E-10 5.7E-15 103.7 10.4 79 147-234 19-100 (106)
23 1mzk_A Kinase associated prote 99.1 9.2E-11 3.2E-15 110.5 9.0 78 153-236 33-119 (139)
24 4ejq_A Kinesin-like protein KI 99.1 2E-10 6.8E-15 110.6 10.9 84 148-236 57-144 (154)
25 2kfu_A RV1827 PThr 22; FHA dom 99.1 3.1E-10 1.1E-14 110.6 11.9 82 145-237 68-150 (162)
26 2ff4_A Probable regulatory pro 99.1 4.5E-10 1.5E-14 120.4 12.3 96 130-236 285-381 (388)
27 3oun_A Putative uncharacterize 99.1 4.1E-10 1.4E-14 109.6 10.7 80 143-233 76-156 (157)
28 1wln_A Afadin; beta sandwich, 99.1 5.1E-10 1.7E-14 102.9 10.0 81 147-236 31-114 (120)
29 3fm8_A Kinesin-like protein KI 99.0 1.4E-09 4.8E-14 102.0 12.1 99 127-234 21-122 (124)
30 2brf_A Bifunctional polynucleo 98.9 6.3E-09 2.1E-13 96.5 10.5 96 134-235 9-106 (110)
31 3uv0_A Mutator 2, isoform B; F 98.8 6.5E-09 2.2E-13 95.2 7.7 68 145-220 13-81 (102)
32 3kt9_A Aprataxin; FHA domain, 98.8 2.5E-08 8.5E-13 91.2 10.9 95 134-234 4-99 (102)
33 1yj5_C 5' polynucleotide kinas 98.8 2.9E-08 9.9E-13 95.7 10.9 98 132-235 7-106 (143)
34 1ujx_A Polynucleotide kinase 3 98.7 1.7E-08 5.7E-13 94.8 7.2 99 132-236 14-114 (119)
35 4egx_A Kinesin-like protein KI 98.5 5.2E-07 1.8E-11 89.5 11.9 83 148-235 87-173 (184)
36 4b4t_M 26S protease regulatory 98.3 2.1E-06 7.2E-11 94.9 12.3 78 447-531 174-252 (434)
37 4b4t_J 26S protease regulatory 98.3 5.8E-06 2E-10 91.0 13.6 77 449-532 143-220 (405)
38 4b4t_I 26S protease regulatory 98.2 1E-05 3.5E-10 89.8 12.9 79 447-532 175-254 (437)
39 4b4t_L 26S protease subunit RP 98.2 1.2E-05 4E-10 89.1 13.2 78 448-532 175-253 (437)
40 3huf_A DNA repair and telomere 98.1 5.2E-06 1.8E-10 89.0 9.4 80 147-228 16-107 (325)
41 4b4t_H 26S protease regulatory 98.1 2.3E-05 7.9E-10 87.7 14.5 78 448-532 203-281 (467)
42 4b4t_K 26S protease regulatory 98.1 4.1E-05 1.4E-09 84.6 15.0 79 447-532 165-244 (428)
43 3cf2_A TER ATPase, transitiona 97.9 2.1E-05 7E-10 93.0 9.5 75 449-530 472-547 (806)
44 2qp9_X Vacuolar protein sortin 97.8 0.00014 4.8E-09 77.0 13.4 76 446-528 43-118 (355)
45 1wv3_A Similar to DNA segregat 97.8 3.8E-05 1.3E-09 78.7 7.9 70 148-223 88-159 (238)
46 4a0e_A YSCD, type III secretio 97.8 5.1E-05 1.8E-09 71.7 7.7 81 145-236 17-98 (123)
47 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00053 1.8E-08 71.7 16.2 76 448-530 6-82 (322)
48 3cf2_A TER ATPase, transitiona 97.7 9.1E-05 3.1E-09 87.6 11.2 77 450-532 200-276 (806)
49 3vfd_A Spastin; ATPase, microt 97.7 0.00036 1.2E-08 74.1 13.9 90 435-532 97-186 (389)
50 3eie_A Vacuolar protein sortin 97.6 0.00044 1.5E-08 71.6 13.4 76 447-529 11-86 (322)
51 2zan_A Vacuolar protein sortin 97.6 0.00049 1.7E-08 75.2 13.8 87 436-530 117-204 (444)
52 3d8b_A Fidgetin-like protein 1 97.5 0.0018 6.2E-08 68.3 15.4 82 439-528 70-151 (357)
53 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.0033 1.1E-07 61.6 14.7 73 450-530 2-75 (262)
54 3b9p_A CG5977-PA, isoform A; A 97.2 0.0057 2E-07 61.5 15.4 86 437-530 5-90 (297)
55 3h4m_A Proteasome-activating n 97.1 0.0051 1.8E-07 61.4 13.3 75 449-530 12-87 (285)
56 3hu3_A Transitional endoplasmi 95.7 0.049 1.7E-06 60.9 11.5 74 451-530 201-274 (489)
57 3pie_A 5'->3' exoribonuclease 93.9 0.034 1.1E-06 68.2 4.5 85 584-678 1051-1136(1155)
58 3hws_A ATP-dependent CLP prote 92.9 0.058 2E-06 56.5 3.8 70 461-532 20-89 (363)
59 1g41_A Heat shock protein HSLU 92.9 0.08 2.7E-06 59.0 5.0 69 461-532 20-88 (444)
60 1lv7_A FTSH; alpha/beta domain 92.8 0.11 3.7E-06 51.4 5.3 79 446-532 4-83 (257)
61 3cf0_A Transitional endoplasmi 92.5 0.061 2.1E-06 55.2 3.2 76 449-531 10-86 (301)
62 2r62_A Cell division protease 92.1 0.064 2.2E-06 53.1 2.7 81 444-532 1-82 (268)
63 2x8a_A Nuclear valosin-contain 90.7 0.19 6.7E-06 51.4 4.6 77 450-532 6-82 (274)
64 1um8_A ATP-dependent CLP prote 89.1 0.19 6.4E-06 52.8 3.1 69 461-531 26-109 (376)
65 3t15_A Ribulose bisphosphate c 88.2 0.29 1E-05 50.3 3.7 38 493-532 37-74 (293)
66 1ofh_A ATP-dependent HSL prote 87.8 0.18 6E-06 50.3 1.7 69 461-532 20-88 (310)
67 2ce7_A Cell division protein F 87.2 0.65 2.2E-05 52.0 6.0 82 443-532 4-87 (476)
68 2dhr_A FTSH; AAA+ protein, hex 86.9 0.67 2.3E-05 52.2 6.0 76 449-532 26-102 (499)
69 1ixz_A ATP-dependent metallopr 85.4 0.57 1.9E-05 46.2 3.9 77 446-530 8-85 (254)
70 3syl_A Protein CBBX; photosynt 83.4 0.88 3E-05 45.7 4.3 48 483-532 58-112 (309)
71 2c9o_A RUVB-like 1; hexameric 80.9 0.98 3.4E-05 49.3 3.9 41 492-534 63-105 (456)
72 2y35_A LD22664P; hydrolase-DNA 80.1 0.85 2.9E-05 56.3 3.3 65 596-671 1056-1132(1140)
73 1ypw_A Transitional endoplasmi 79.9 1.4 4.9E-05 51.9 5.0 78 450-533 473-550 (806)
74 1sxj_A Activator 1 95 kDa subu 79.8 1.7 5.8E-05 48.2 5.4 47 484-532 69-115 (516)
75 2bjv_A PSP operon transcriptio 79.7 2.3 7.9E-05 42.1 5.7 63 451-530 3-68 (265)
76 3cf0_A Transitional endoplasmi 78.2 5.4 0.00018 40.8 8.1 54 690-746 97-163 (301)
77 1iy2_A ATP-dependent metallopr 78.0 1.7 5.6E-05 43.7 4.2 75 448-530 34-109 (278)
78 2w58_A DNAI, primosome compone 76.8 1.8 6.1E-05 40.9 3.8 81 436-527 7-90 (202)
79 3syl_A Protein CBBX; photosynt 75.9 11 0.00036 37.8 9.4 83 704-824 130-218 (309)
80 1d2n_A N-ethylmaleimide-sensit 75.4 1.5 5.3E-05 43.6 3.1 37 490-528 62-98 (272)
81 2q5w_D Molybdopterin convertin 74.5 2.2 7.5E-05 35.5 3.3 26 199-226 48-73 (77)
82 1lv7_A FTSH; alpha/beta domain 74.1 7.9 0.00027 38.0 7.8 54 690-746 93-159 (257)
83 3n70_A Transport activator; si 73.5 2.5 8.6E-05 38.5 3.8 40 490-532 22-64 (145)
84 3bos_A Putative DNA replicatio 72.0 5 0.00017 37.9 5.6 34 492-527 52-88 (242)
85 3u61_B DNA polymerase accessor 71.6 5.7 0.00019 40.4 6.3 35 493-529 49-83 (324)
86 1ypw_A Transitional endoplasmi 71.3 2.1 7.1E-05 50.6 3.4 76 450-532 200-276 (806)
87 3po0_A Small archaeal modifier 69.8 2.4 8.3E-05 36.3 2.6 26 199-226 60-85 (89)
88 1njg_A DNA polymerase III subu 68.8 24 0.00081 32.5 9.3 41 702-745 124-164 (250)
89 2g1e_A Hypothetical protein TA 68.6 2.2 7.4E-05 36.4 2.0 28 199-226 57-86 (90)
90 1fm0_D Molybdopterin convertin 68.1 3.6 0.00012 34.4 3.3 26 199-226 52-77 (81)
91 2k6p_A Uncharacterized protein 67.8 3.3 0.00011 35.9 3.0 31 196-228 24-54 (92)
92 3pfi_A Holliday junction ATP-d 67.3 3.8 0.00013 41.8 3.9 38 492-531 55-92 (338)
93 2chg_A Replication factor C sm 67.1 33 0.0011 31.3 9.9 41 702-745 100-140 (226)
94 3dwg_C 9.5 kDa culture filtrat 66.9 2.9 9.9E-05 36.2 2.5 28 199-226 60-89 (93)
95 1d2n_A N-ethylmaleimide-sensit 66.8 28 0.00095 34.5 9.9 54 690-746 113-176 (272)
96 2cu3_A Unknown function protei 66.6 2.5 8.7E-05 34.6 2.0 27 199-225 31-59 (64)
97 3rpf_C Molybdopterin convertin 66.3 2.9 9.7E-05 35.1 2.3 29 197-226 42-70 (74)
98 1ryj_A Unknown; beta/alpha pro 66.2 3.9 0.00013 34.1 3.1 26 199-226 41-66 (70)
99 2qjl_A URM1, ubiquitin-related 64.9 3.3 0.00011 36.7 2.5 28 199-226 66-95 (99)
100 1hqc_A RUVB; extended AAA-ATPa 63.5 3.6 0.00012 41.4 2.9 37 492-530 38-74 (324)
101 1qhx_A CPT, protein (chloramph 63.1 4.8 0.00016 37.0 3.3 33 493-527 4-36 (178)
102 4fcw_A Chaperone protein CLPB; 63.1 4.6 0.00016 40.4 3.5 37 493-531 48-87 (311)
103 2l52_A Methanosarcina acetivor 62.6 2.8 9.5E-05 37.3 1.6 28 199-226 66-95 (99)
104 1vjk_A Molybdopterin convertin 62.3 3.5 0.00012 36.3 2.2 26 199-226 69-94 (98)
105 2v1u_A Cell division control p 61.8 19 0.00064 36.6 7.7 56 689-746 117-176 (387)
106 2r44_A Uncharacterized protein 61.8 7.4 0.00025 39.7 4.8 33 493-527 47-79 (331)
107 1rws_A Hypothetical protein PF 61.5 2.5 8.5E-05 35.9 1.0 26 199-226 48-73 (77)
108 3co5_A Putative two-component 60.7 1.8 6.1E-05 39.5 0.0 35 492-529 27-61 (143)
109 1jbk_A CLPB protein; beta barr 60.6 5.9 0.0002 35.5 3.4 25 492-518 43-67 (195)
110 1iy2_A ATP-dependent metallopr 59.7 26 0.00089 35.0 8.3 88 690-823 121-223 (278)
111 3trf_A Shikimate kinase, SK; a 59.0 4.5 0.00016 37.5 2.4 34 492-527 5-38 (185)
112 2iyv_A Shikimate kinase, SK; t 58.9 4.7 0.00016 37.4 2.6 33 493-527 3-35 (184)
113 2chg_A Replication factor C sm 57.5 8.9 0.0003 35.2 4.1 34 494-529 40-78 (226)
114 1dm9_A Hypothetical 15.5 KD pr 57.4 7.1 0.00024 36.7 3.5 36 196-234 32-67 (133)
115 3crm_A TRNA delta(2)-isopenten 56.3 6.1 0.00021 42.3 3.2 38 492-531 5-42 (323)
116 1ixz_A ATP-dependent metallopr 55.1 28 0.00097 34.0 7.5 24 800-823 176-199 (254)
117 1jr3_A DNA polymerase III subu 55.1 54 0.0019 33.3 9.9 41 702-745 117-157 (373)
118 3iij_A Coilin-interacting nucl 55.1 5.8 0.0002 36.8 2.5 34 492-527 11-44 (180)
119 2qby_A CDC6 homolog 1, cell di 55.1 52 0.0018 33.2 9.7 55 689-745 115-171 (386)
120 2p65_A Hypothetical protein PF 54.5 8.1 0.00028 34.8 3.3 25 492-518 43-67 (187)
121 1r6b_X CLPA protein; AAA+, N-t 54.1 7.4 0.00025 44.8 3.6 36 494-531 490-525 (758)
122 1via_A Shikimate kinase; struc 54.0 6 0.0002 36.6 2.4 32 493-526 5-36 (175)
123 2r62_A Cell division protease 52.5 5.7 0.00019 39.1 2.0 24 800-823 173-196 (268)
124 2chq_A Replication factor C sm 51.9 7.1 0.00024 38.7 2.7 37 494-532 40-81 (319)
125 2ze6_A Isopentenyl transferase 51.5 7.9 0.00027 38.9 2.9 35 494-530 3-37 (253)
126 2k9x_A Tburm1, uncharacterized 50.8 5.5 0.00019 36.7 1.5 27 199-225 69-97 (110)
127 1wgk_A Riken cDNA 2900073H19 p 50.5 4.7 0.00016 37.2 1.0 27 199-225 75-103 (114)
128 1f0z_A THis protein; ubiquitin 50.3 3.3 0.00011 34.0 -0.0 27 199-225 33-61 (66)
129 1tyg_B YJBS; alpha beta barrel 49.7 6.1 0.00021 35.0 1.6 27 199-225 54-82 (87)
130 3pxi_A Negative regulator of g 48.7 9.9 0.00034 44.0 3.5 37 494-532 523-562 (758)
131 3ec2_A DNA replication protein 48.3 18 0.0006 33.6 4.6 25 492-518 38-62 (180)
132 2qgz_A Helicase loader, putati 48.3 12 0.0004 39.0 3.7 34 492-527 152-189 (308)
133 3foz_A TRNA delta(2)-isopenten 47.9 9.4 0.00032 41.1 3.0 39 492-532 10-48 (316)
134 3uk6_A RUVB-like 2; hexameric 47.6 12 0.00039 38.5 3.5 38 705-745 190-227 (368)
135 1l8q_A Chromosomal replication 47.3 7.9 0.00027 39.5 2.2 38 491-530 36-76 (324)
136 1g8p_A Magnesium-chelatase 38 47.0 11 0.00038 38.2 3.2 52 450-520 20-71 (350)
137 3dl0_A Adenylate kinase; phosp 46.8 9 0.00031 36.5 2.4 31 494-526 2-32 (216)
138 3fb4_A Adenylate kinase; psych 46.3 9 0.00031 36.4 2.3 31 494-526 2-32 (216)
139 1e6c_A Shikimate kinase; phosp 45.0 10 0.00036 34.4 2.4 32 493-526 3-34 (173)
140 1r6b_X CLPA protein; AAA+, N-t 44.6 19 0.00064 41.5 5.0 92 690-825 267-364 (758)
141 1v8c_A MOAD related protein; r 43.7 10 0.00036 37.0 2.3 28 199-226 54-83 (168)
142 2cow_A Kinesin-like protein KI 43.2 88 0.003 28.6 8.1 36 643-679 53-94 (100)
143 3vaa_A Shikimate kinase, SK; s 42.9 11 0.00038 35.8 2.3 34 492-527 25-58 (199)
144 3t61_A Gluconokinase; PSI-biol 42.5 15 0.00052 34.6 3.2 33 492-526 18-50 (202)
145 1wv3_A Similar to DNA segregat 42.4 31 0.0011 35.2 5.7 54 147-221 15-69 (238)
146 2pt5_A Shikimate kinase, SK; a 41.9 12 0.0004 34.0 2.2 31 494-526 2-32 (168)
147 1sxj_B Activator 1 37 kDa subu 41.9 14 0.00049 36.6 3.1 33 495-529 45-82 (323)
148 2cdn_A Adenylate kinase; phosp 41.7 12 0.00039 35.5 2.2 32 493-526 21-52 (201)
149 2rhm_A Putative kinase; P-loop 41.5 11 0.00038 34.8 2.0 32 493-526 6-37 (193)
150 3u61_B DNA polymerase accessor 40.6 34 0.0012 34.6 5.7 40 704-745 105-144 (324)
151 3kb2_A SPBC2 prophage-derived 40.6 16 0.00054 32.9 2.9 31 494-526 3-33 (173)
152 1jbk_A CLPB protein; beta barr 39.8 22 0.00075 31.7 3.7 53 689-745 102-159 (195)
153 3a8t_A Adenylate isopentenyltr 39.2 15 0.0005 39.8 2.8 36 494-531 42-77 (339)
154 1p9k_A ORF, hypothetical prote 39.2 7.2 0.00024 33.1 0.3 27 196-223 44-70 (79)
155 1zuh_A Shikimate kinase; alpha 39.2 14 0.00049 33.7 2.4 32 493-526 8-39 (168)
156 1qvr_A CLPB protein; coiled co 39.1 17 0.00058 42.9 3.6 37 493-531 589-628 (854)
157 2ce7_A Cell division protein F 38.8 68 0.0023 35.9 8.1 54 690-746 97-163 (476)
158 1sxj_D Activator 1 41 kDa subu 38.6 24 0.00083 35.6 4.2 35 494-530 60-100 (353)
159 3pvs_A Replication-associated 38.6 22 0.00074 39.2 4.1 33 493-527 51-83 (447)
160 3pxg_A Negative regulator of g 38.2 14 0.00046 40.7 2.4 34 493-528 202-245 (468)
161 1c05_A Ribosomal protein S4 de 38.2 18 0.00062 34.9 3.0 29 196-225 74-102 (159)
162 2v1u_A Cell division control p 37.8 24 0.00083 35.8 4.0 39 490-530 42-89 (387)
163 1e4v_A Adenylate kinase; trans 37.7 14 0.00046 35.5 2.1 31 494-526 2-32 (214)
164 2bwj_A Adenylate kinase 5; pho 37.7 14 0.00049 34.2 2.2 32 493-526 13-44 (199)
165 2c95_A Adenylate kinase 1; tra 36.8 16 0.00054 33.8 2.3 33 492-526 9-41 (196)
166 1ojl_A Transcriptional regulat 36.8 23 0.00077 36.6 3.7 39 490-530 23-64 (304)
167 1ak2_A Adenylate kinase isoenz 36.4 18 0.00062 35.2 2.8 33 492-526 16-48 (233)
168 2k5p_A THis protein, thiamine- 36.3 20 0.00069 30.9 2.7 28 198-225 35-64 (78)
169 2qby_B CDC6 homolog 3, cell di 35.9 21 0.00072 36.5 3.3 37 492-530 45-92 (384)
170 1aky_A Adenylate kinase; ATP:A 35.6 18 0.00061 34.7 2.5 32 493-526 5-36 (220)
171 3t15_A Ribulose bisphosphate c 35.6 37 0.0013 34.6 5.1 45 702-746 97-164 (293)
172 3uk6_A RUVB-like 2; hexameric 35.2 94 0.0032 31.7 8.0 38 492-531 70-109 (368)
173 3exa_A TRNA delta(2)-isopenten 35.1 16 0.00054 39.5 2.3 37 493-531 4-40 (322)
174 2z4s_A Chromosomal replication 34.8 16 0.00055 39.8 2.3 37 492-530 130-171 (440)
175 1qvr_A CLPB protein; coiled co 34.4 54 0.0018 38.7 6.8 53 690-746 251-308 (854)
176 1zd8_A GTP:AMP phosphotransfer 34.4 18 0.0006 35.0 2.3 32 493-526 8-39 (227)
177 3d3q_A TRNA delta(2)-isopenten 34.4 20 0.00068 38.7 2.9 37 493-531 8-44 (340)
178 1iqp_A RFCS; clamp loader, ext 34.3 20 0.0007 35.6 2.8 32 494-527 48-84 (327)
179 1jcu_A Conserved protein MTH16 34.2 40 0.0014 33.7 4.9 57 686-744 45-102 (208)
180 1hru_A YRDC gene product; prot 34.1 41 0.0014 33.0 4.8 56 686-744 39-99 (188)
181 1sxj_B Activator 1 37 kDa subu 33.7 87 0.003 31.0 7.2 40 703-745 106-145 (323)
182 1kht_A Adenylate kinase; phosp 33.7 18 0.00061 33.2 2.1 25 493-519 4-28 (192)
183 2qby_B CDC6 homolog 3, cell di 33.6 91 0.0031 31.8 7.5 50 688-745 121-172 (384)
184 2kjq_A DNAA-related protein; s 33.6 27 0.00092 32.4 3.3 38 491-530 35-75 (149)
185 1y63_A LMAJ004144AAA protein; 33.4 22 0.00076 33.4 2.7 33 492-526 10-43 (184)
186 2qmh_A HPR kinase/phosphorylas 33.1 8.9 0.0003 39.0 -0.1 44 485-531 27-70 (205)
187 3be4_A Adenylate kinase; malar 32.8 18 0.00061 34.9 2.0 32 493-526 6-37 (217)
188 1uj2_A Uridine-cytidine kinase 32.3 25 0.00087 34.7 3.1 38 493-532 23-68 (252)
189 1fnn_A CDC6P, cell division co 32.0 33 0.0011 35.0 4.0 34 493-528 45-82 (389)
190 1ly1_A Polynucleotide kinase; 31.7 16 0.00054 33.1 1.4 28 494-523 4-32 (181)
191 3tlx_A Adenylate kinase 2; str 31.5 20 0.0007 35.5 2.3 32 493-526 30-61 (243)
192 1w5s_A Origin recognition comp 31.5 1.4E+02 0.0047 30.8 8.5 53 689-743 125-185 (412)
193 3m6a_A ATP-dependent protease 31.2 30 0.001 38.8 3.8 37 491-529 107-143 (543)
194 2vqe_D 30S ribosomal protein S 31.1 26 0.00087 35.4 2.9 28 196-224 122-149 (209)
195 1tev_A UMP-CMP kinase; ploop, 31.1 22 0.00075 32.5 2.2 29 493-523 4-32 (196)
196 1ukz_A Uridylate kinase; trans 31.0 23 0.00077 33.3 2.4 32 493-526 16-47 (203)
197 2z4s_A Chromosomal replication 30.9 39 0.0013 36.8 4.5 40 704-745 194-236 (440)
198 3bos_A Putative DNA replicatio 30.9 65 0.0022 30.2 5.5 22 803-824 167-188 (242)
199 1a5t_A Delta prime, HOLB; zinc 29.9 23 0.0008 36.7 2.4 28 491-520 23-50 (334)
200 3lw7_A Adenylate kinase relate 29.9 23 0.0008 31.4 2.1 31 493-526 2-32 (179)
201 2dhr_A FTSH; AAA+ protein, hex 29.8 90 0.0031 35.1 7.3 45 702-746 121-178 (499)
202 3cm0_A Adenylate kinase; ATP-b 29.7 20 0.00069 33.0 1.7 29 493-523 5-33 (186)
203 2vli_A Antibiotic resistance p 29.7 25 0.00085 32.2 2.3 29 493-523 6-34 (183)
204 1ksk_A Ribosomal small subunit 29.6 29 0.001 34.6 3.0 28 196-224 26-53 (234)
205 2fna_A Conserved hypothetical 29.4 74 0.0025 31.7 5.9 35 493-529 31-65 (357)
206 1vio_A Ribosomal small subunit 29.4 30 0.001 34.9 3.1 27 196-223 25-51 (243)
207 1in4_A RUVB, holliday junction 29.4 39 0.0013 35.0 4.0 33 493-527 52-84 (334)
208 2p5t_B PEZT; postsegregational 29.4 22 0.00075 35.3 2.1 36 493-530 33-68 (253)
209 1gvn_B Zeta; postsegregational 29.2 23 0.00078 36.4 2.2 33 493-527 34-66 (287)
210 1qf9_A UMP/CMP kinase, protein 29.0 23 0.0008 32.3 2.0 31 493-525 7-37 (194)
211 2chq_A Replication factor C sm 29.0 71 0.0024 31.5 5.7 40 703-745 101-140 (319)
212 3pxi_A Negative regulator of g 28.9 19 0.00063 41.8 1.6 73 703-823 266-338 (758)
213 2e6z_A Transcription elongatio 28.7 56 0.0019 26.8 4.0 37 595-648 4-40 (59)
214 1tue_A Replication protein E1; 28.6 23 0.00078 36.3 2.0 33 492-526 58-90 (212)
215 3eph_A TRNA isopentenyltransfe 28.3 26 0.00088 39.0 2.5 36 494-531 4-39 (409)
216 2kl0_A Putative thiamin biosyn 28.0 17 0.00057 31.0 0.8 28 198-225 31-60 (73)
217 1sxj_A Activator 1 95 kDa subu 27.6 1.4E+02 0.0047 33.0 8.2 44 702-745 146-189 (516)
218 2p65_A Hypothetical protein PF 27.3 79 0.0027 28.2 5.2 53 689-745 102-160 (187)
219 1kag_A SKI, shikimate kinase I 27.1 32 0.0011 31.2 2.6 32 492-527 4-35 (173)
220 3a4m_A L-seryl-tRNA(SEC) kinas 27.1 38 0.0013 33.8 3.4 33 493-527 5-40 (260)
221 1fnn_A CDC6P, cell division co 27.0 1E+02 0.0036 31.3 6.6 51 688-743 111-165 (389)
222 2pbr_A DTMP kinase, thymidylat 26.9 42 0.0014 30.7 3.3 31 494-526 2-35 (195)
223 2xb4_A Adenylate kinase; ATP-b 26.8 27 0.00093 33.9 2.2 30 494-525 2-31 (223)
224 2gno_A DNA polymerase III, gam 26.8 39 0.0013 35.2 3.5 34 492-527 18-57 (305)
225 1hv8_A Putative ATP-dependent 26.8 22 0.00074 35.7 1.5 70 451-525 6-80 (367)
226 1u0j_A DNA replication protein 26.0 30 0.001 36.2 2.4 27 492-520 104-130 (267)
227 1k7j_A Protein YCIO, protein T 26.0 41 0.0014 33.5 3.3 54 686-744 46-103 (206)
228 2v54_A DTMP kinase, thymidylat 26.0 47 0.0016 30.9 3.6 33 492-526 4-37 (204)
229 1njg_A DNA polymerase III subu 25.8 29 0.001 31.9 2.1 27 493-521 46-72 (250)
230 2qby_A CDC6 homolog 1, cell di 25.6 49 0.0017 33.4 3.9 37 490-528 43-85 (386)
231 3ake_A Cytidylate kinase; CMP 25.6 35 0.0012 31.8 2.6 32 493-526 3-34 (208)
232 2cqj_A BRMS2, U3 small nucleol 25.6 21 0.00073 30.2 1.0 29 197-225 32-61 (71)
233 1zak_A Adenylate kinase; ATP:A 25.6 26 0.0009 33.6 1.8 28 493-522 6-33 (222)
234 2coy_A Dynactin-1; microtubule 25.3 1.3E+02 0.0043 28.1 6.2 33 643-676 64-102 (112)
235 3bbn_D Ribosomal protein S4; s 25.2 33 0.0011 34.8 2.4 29 196-225 112-140 (201)
236 3pxg_A Negative regulator of g 25.0 26 0.0009 38.4 1.9 35 703-746 266-300 (468)
237 3ly5_A ATP-dependent RNA helic 24.9 38 0.0013 33.7 2.9 64 449-516 50-118 (262)
238 2arc_A ARAC, arabinose operon 24.8 1.2E+02 0.0042 26.9 6.0 41 187-233 38-78 (164)
239 1nks_A Adenylate kinase; therm 24.8 28 0.00095 31.8 1.7 32 494-527 3-37 (194)
240 2va8_A SSO2462, SKI2-type heli 24.7 75 0.0026 36.2 5.6 61 450-515 7-72 (715)
241 1jr3_A DNA polymerase III subu 24.4 35 0.0012 34.8 2.5 26 493-520 39-64 (373)
242 1hqc_A RUVB; extended AAA-ATPa 24.2 2.2E+02 0.0075 28.4 8.3 15 703-717 89-103 (324)
243 4i4a_A Similar to unknown prot 23.9 1.3E+02 0.0043 26.2 5.7 39 188-232 55-93 (128)
244 2gxq_A Heat resistant RNA depe 23.8 52 0.0018 30.5 3.4 57 452-514 2-63 (207)
245 3f8t_A Predicted ATPase involv 23.8 77 0.0026 36.3 5.3 71 409-517 191-262 (506)
246 2pl3_A Probable ATP-dependent 23.7 1.1E+02 0.0038 29.2 5.8 60 451-516 25-89 (236)
247 3dh3_A Ribosomal large subunit 23.5 41 0.0014 35.4 2.9 27 196-224 29-55 (290)
248 1iqp_A RFCS; clamp loader, ext 23.4 1.5E+02 0.0051 29.3 6.8 40 703-745 109-148 (327)
249 3te6_A Regulatory protein SIR3 23.3 2.1E+02 0.0072 30.3 8.3 95 689-825 118-213 (318)
250 1sxj_C Activator 1 40 kDa subu 23.3 44 0.0015 34.4 3.1 33 495-529 49-86 (340)
251 2plr_A DTMP kinase, probable t 22.8 55 0.0019 30.3 3.4 27 493-521 5-31 (213)
252 2ozj_A Cupin 2, conserved barr 22.7 1.1E+02 0.0038 26.1 5.1 39 189-233 60-98 (114)
253 3bor_A Human initiation factor 22.6 46 0.0016 32.3 2.9 63 447-515 26-93 (237)
254 3nbx_X ATPase RAVA; AAA+ ATPas 22.4 36 0.0012 38.3 2.3 26 493-520 42-67 (500)
255 2x8a_A Nuclear valosin-contain 22.4 93 0.0032 31.6 5.2 90 689-824 91-192 (274)
256 2pez_A Bifunctional 3'-phospho 22.2 58 0.002 30.0 3.4 34 492-527 5-41 (179)
257 2if2_A Dephospho-COA kinase; a 22.0 39 0.0013 31.7 2.2 32 493-527 2-33 (204)
258 2p6r_A Afuhel308 helicase; pro 21.8 37 0.0013 38.7 2.3 69 451-525 1-74 (702)
259 2i45_A Hypothetical protein; n 21.8 1.4E+02 0.0048 25.2 5.5 40 189-233 50-89 (107)
260 2z0h_A DTMP kinase, thymidylat 21.8 61 0.0021 29.9 3.4 31 494-526 2-35 (197)
261 3r20_A Cytidylate kinase; stru 21.6 46 0.0016 33.8 2.7 34 493-530 10-43 (233)
262 2jaq_A Deoxyguanosine kinase; 21.4 52 0.0018 30.3 2.9 28 494-523 2-29 (205)
263 1ofh_A ATP-dependent HSL prote 21.3 2.6E+02 0.0087 27.5 8.0 26 795-820 187-212 (310)
264 2zj8_A DNA helicase, putative 21.0 78 0.0027 36.2 4.8 69 451-525 1-74 (720)
265 1o5u_A Novel thermotoga mariti 20.9 1.2E+02 0.0042 26.6 5.1 40 189-233 51-90 (101)
266 3te6_A Regulatory protein SIR3 20.9 82 0.0028 33.4 4.6 27 491-519 44-70 (318)
267 2kmm_A Guanosine-3',5'-BIS(dip 20.9 56 0.0019 26.4 2.6 24 200-225 39-62 (73)
268 1y9q_A Transcriptional regulat 20.7 1.3E+02 0.0046 28.2 5.6 38 188-231 127-164 (192)
269 1knq_A Gluconate kinase; ALFA/ 20.6 49 0.0017 30.2 2.5 32 492-527 8-39 (175)
270 3fjs_A Uncharacterized protein 20.2 1.5E+02 0.0052 25.9 5.5 38 189-232 58-95 (114)
271 1tq5_A Protein YHHW; bicupin, 20.1 1.7E+02 0.0059 29.9 6.6 37 188-226 182-218 (242)
272 1l8q_A Chromosomal replication 20.0 92 0.0032 31.6 4.6 39 705-745 99-140 (324)
No 1
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.80 E-value=3.4e-19 Score=169.75 Aligned_cols=111 Identities=24% Similarity=0.366 Sum_probs=97.9
Q ss_pred CCcccceeecccCCCCCceeeecceeEeecccccceEecCCC---------CccceeEEEEeecCC-CceEEEEEecCCc
Q 003126 129 GSRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPS---------ISKNLCRLRRIENGG-PSGALLEITGGKG 198 (845)
Q Consensus 129 ~~~~pWgRLlSq~sq~P~i~I~~~~fTvGr~~~CDl~L~D~~---------IS~~hCkI~r~e~gg-~~vA~LEd~ssnG 198 (845)
....+||+|++++..++.+.|....|+|||+..||++|.|.. ||..||+|.+...++ ....+|+|+|+||
T Consensus 25 ~~~~~w~~L~~~~~~~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StNG 104 (149)
T 1gxc_A 25 PTPAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNG 104 (149)
T ss_dssp ----CCEEEEECSTTCCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSC
T ss_pred CCCCeeEEEEEcCCCCceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCCC
Confidence 445689999999999999999999999999999999999985 999999999876543 3468999999999
Q ss_pred eEEECCEEcCCCceEEeeCCCEEEEccCCCeeEEEEecCccc
Q 003126 199 EVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDT 240 (845)
Q Consensus 199 tV~VNGkkvgKg~kviL~~GDEIvfs~~g~~aYIFq~l~~e~ 240 (845)
| ||||++|.+|..+.|+.||+|.|+.+...+|+|+++..++
T Consensus 105 T-~VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~~~~~ 145 (149)
T 1gxc_A 105 T-FVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDD 145 (149)
T ss_dssp E-EETTEECCTTCEEECCTTEEEEESSTTCEEEEEEETTCC-
T ss_pred e-EECCEECCCCCeEECCCCCEEEECCCCCeEEEEEECCccc
Confidence 9 9999999999999999999999999988999999986654
No 2
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.73 E-value=8.3e-18 Score=152.90 Aligned_cols=105 Identities=27% Similarity=0.463 Sum_probs=91.6
Q ss_pred ccceeecccCC--CCCceeeecceeEeecccccceEecCC-CCccceeEEEEeecCCCceEEEEEecCCceEEECCEEcC
Q 003126 132 IPWARLISQCS--QNSHLSMTGAVFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHP 208 (845)
Q Consensus 132 ~pWgRLlSq~s--q~P~i~I~~~~fTvGr~~~CDl~L~D~-~IS~~hCkI~r~e~gg~~vA~LEd~ssnGtV~VNGkkvg 208 (845)
.+||+|+++.+ ..+.+.|....++|||+..||++|.|. .||..||+|.+...++ ..+|+|.|.||| ||||+++.
T Consensus 2 ~~wg~L~~~~~~~~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~--~~~l~D~S~NGt-~vng~~l~ 78 (116)
T 1lgp_A 2 QPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSG--QVTLEDTSTSGT-VINKLKVV 78 (116)
T ss_dssp CCCEEECCTTCCSSSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTC--CEEEEECSSSCC-CCCCCCCC
T ss_pred CCEEEEEEeCCCCCccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCC--eEEEEECCcCCc-EECCEEcC
Confidence 58999999976 667889999999999999999999885 8999999999853233 378999777999 99999999
Q ss_pred CCceEEeeCCCEEEEccCC-----CeeEEEEecCcc
Q 003126 209 KDSQVVLRGGDELVFSPSG-----KHSYIFQQLSDD 239 (845)
Q Consensus 209 Kg~kviL~~GDEIvfs~~g-----~~aYIFq~l~~e 239 (845)
++..+.|+.||+|.|+.+. ..+|+|+++..+
T Consensus 79 ~~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~~~~ 114 (116)
T 1lgp_A 79 KKQTCPLQTGDVIYLVYRKNEPEHNVAYLYESLSEK 114 (116)
T ss_dssp CSSCCCCCTTCEEEEECCSSCGGGCEEEECCCSCC-
T ss_pred CCCcEECCCCCEEEEeccCCCCCceEEEEEEccccc
Confidence 9999999999999999875 789999987554
No 3
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.61 E-value=2.6e-15 Score=143.18 Aligned_cols=109 Identities=23% Similarity=0.375 Sum_probs=89.5
Q ss_pred CCCCcccceeecccCC-CCCceeee-cceeEeecccccceEecCCCCccceeEEEEee--cC--CCceEEEEEecCCceE
Q 003126 127 KVGSRIPWARLISQCS-QNSHLSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIE--NG--GPSGALLEITGGKGEV 200 (845)
Q Consensus 127 k~~~~~pWgRLlSq~s-q~P~i~I~-~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e--~g--g~~vA~LEd~ssnGtV 200 (845)
.+....+|++|+.+.+ ....+.|. +..|+|||...|||+|.|..||..||+|.... .+ .....+|+|+|.|||
T Consensus 11 ~~~~~~~~~~L~~~~~~~g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT- 89 (151)
T 2jqj_A 11 PSSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGT- 89 (151)
T ss_dssp CSSSCCEEEEEEEEETTEEEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCE-
T ss_pred CCCCCCceEEEEEecCCCceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCe-
Confidence 4566789999998776 45566887 48999999999999999999999999999842 11 223588999988999
Q ss_pred EECCEEcCCCceEEeeCCCEEEEccCCCeeEEEEecCcc
Q 003126 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDD 239 (845)
Q Consensus 201 ~VNGkkvgKg~kviL~~GDEIvfs~~g~~aYIFq~l~~e 239 (845)
||||++|.++ .+.|..||+|.|+. ...|+|......
T Consensus 90 ~VNg~~i~~~-~~~L~~GD~I~lG~--~~~~~f~~~~~~ 125 (151)
T 2jqj_A 90 FINGNRLVKK-DYILKNGDRIVFGK--SCSFLFKYASSS 125 (151)
T ss_dssp EETTEECCSS-CEEECSSEEEEETT--TEEEEEEECSSC
T ss_pred EECCEEcCCC-ceECCCCCEEEECC--CcEEEEEEcCCC
Confidence 9999999999 99999999999977 246777765444
No 4
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.61 E-value=2.8e-15 Score=139.05 Aligned_cols=102 Identities=25% Similarity=0.283 Sum_probs=89.9
Q ss_pred cccceeecccCCCCCceeeecc-------------eeEeecccccceEecCC-CCccceeEEEEeecCCCceEEEEEecC
Q 003126 131 RIPWARLISQCSQNSHLSMTGA-------------VFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGG 196 (845)
Q Consensus 131 ~~pWgRLlSq~sq~P~i~I~~~-------------~fTvGr~~~CDl~L~D~-~IS~~hCkI~r~e~gg~~vA~LEd~ss 196 (845)
..+||||.++..++|.+.|..+ .++|||+..||++|.|. .||..||+|...+.+ ..+|+|+|.
T Consensus 2 ~~~~~~L~~~~~~~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~~g---~~~l~DlS~ 78 (127)
T 1g6g_A 2 ENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDG---NLLLNDIST 78 (127)
T ss_dssp CEEEEEEEESSSSSCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECTTS---CEEEEECCS
T ss_pred CceEEEEEECCCCCCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECCCC---cEEEEECCc
Confidence 3579999999999999999887 99999999999999997 599999999974333 388999988
Q ss_pred CceEEECCEEcCCCceEEeeCCCEEEEccCC---CeeEEEEec
Q 003126 197 KGEVEVNGNVHPKDSQVVLRGGDELVFSPSG---KHSYIFQQL 236 (845)
Q Consensus 197 nGtV~VNGkkvgKg~kviL~~GDEIvfs~~g---~~aYIFq~l 236 (845)
||| ||||+++.++..+.|..||+|.|+... ...|+|+..
T Consensus 79 NGT-~vNg~~l~~~~~~~L~~Gd~I~lG~~~~~~~i~f~~~~~ 120 (127)
T 1g6g_A 79 NGT-WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFIN 120 (127)
T ss_dssp SCC-EETTEECCTTCCEECCTTCEEEECTTSGGGCEEEEEEEC
T ss_pred CCe-EECCEEcCCCCeEEcCCCCEEEECCCccCceEEEEEEeC
Confidence 999 999999999999999999999998754 456888754
No 5
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.57 E-value=6.7e-15 Score=156.65 Aligned_cols=108 Identities=25% Similarity=0.392 Sum_probs=97.5
Q ss_pred cccceeecccCCCCCceeeecceeEeecccccceEecCCCC---------ccceeEEEEeecC-CCceEEEEEecCCceE
Q 003126 131 RIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSI---------SKNLCRLRRIENG-GPSGALLEITGGKGEV 200 (845)
Q Consensus 131 ~~pWgRLlSq~sq~P~i~I~~~~fTvGr~~~CDl~L~D~~I---------S~~hCkI~r~e~g-g~~vA~LEd~ssnGtV 200 (845)
..+||+|.+....++.+++..+.|+|||+..||++|.|+.+ |+.||.|++.... +..+++|+|.|+|||
T Consensus 7 ~~~~g~l~~~~~~~~~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~nGt- 85 (419)
T 3i6u_A 7 PAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGT- 85 (419)
T ss_dssp CCCSEEEEECSSSSCCEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSSCE-
T ss_pred CCCceEeeecCCCCCceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcCCc-
Confidence 44899999999999999999999999999999999999876 9999999875433 345799999999999
Q ss_pred EECCEEcCCCceEEeeCCCEEEEccCCCeeEEEEecCcc
Q 003126 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDD 239 (845)
Q Consensus 201 ~VNGkkvgKg~kviL~~GDEIvfs~~g~~aYIFq~l~~e 239 (845)
||||+.++++.+..|++||+|.|+....+.|+|.++..+
T Consensus 86 ~vn~~~~~~~~~~~l~~~d~i~~~~~~~~~~~~~~~~~~ 124 (419)
T 3i6u_A 86 FVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVD 124 (419)
T ss_dssp EETTEECCTTCEEECCTTEEEEESSTTCEEEEEEESCSS
T ss_pred eECcccccCCCcccCCCCCEeeeeccccceEEEeccccc
Confidence 999999999999999999999999999999999887543
No 6
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=129.50 Aligned_cols=86 Identities=24% Similarity=0.352 Sum_probs=70.8
Q ss_pred eeee-cceeEeecccccceEecCCCCccceeEEEEeecC-------CCceEEEEEecC-CceEEECCEEcCCCceEEeeC
Q 003126 147 LSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENG-------GPSGALLEITGG-KGEVEVNGNVHPKDSQVVLRG 217 (845)
Q Consensus 147 i~I~-~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~g-------g~~vA~LEd~ss-nGtV~VNGkkvgKg~kviL~~ 217 (845)
+.|. ++.|+|||...|||+|.|+.||..||.|.+-..+ .....+|+|++| ||| ||||++|.++..+.|+.
T Consensus 35 ~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT-~vNg~ri~~~~~~~L~~ 113 (130)
T 4h87_A 35 RSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGT-FLNKTRIPPRTYCRVHV 113 (130)
T ss_dssp EECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCE-EETTEECCTTCCEECCT
T ss_pred EEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCce-EECCEECCCCceeECCC
Confidence 3454 3568999999999999999999999999652111 123478999855 999 99999999999999999
Q ss_pred CCEEEEccCCCeeEEEE
Q 003126 218 GDELVFSPSGKHSYIFQ 234 (845)
Q Consensus 218 GDEIvfs~~g~~aYIFq 234 (845)
||+|.|+.+.+ .|||+
T Consensus 114 GD~I~~G~str-~yvl~ 129 (130)
T 4h87_A 114 GHVVRFGGSTR-LFILQ 129 (130)
T ss_dssp TCEEEETTCSE-EEEEE
T ss_pred CCEEEECCceE-EEEEc
Confidence 99999998776 59986
No 7
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.44 E-value=6.7e-13 Score=128.57 Aligned_cols=104 Identities=24% Similarity=0.292 Sum_probs=88.1
Q ss_pred CcccceeecccCCCCCceeeecc-------------eeEeecccccceEecCC-CCccceeEEEEeecCCCceEEEEEec
Q 003126 130 SRIPWARLISQCSQNSHLSMTGA-------------VFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITG 195 (845)
Q Consensus 130 ~~~pWgRLlSq~sq~P~i~I~~~-------------~fTvGr~~~CDl~L~D~-~IS~~hCkI~r~e~gg~~vA~LEd~s 195 (845)
....|++|.......+...+.-. .|+|||+..||++|.|. .||..||+|.+.+.| ..+|+|+|
T Consensus 29 ~~~~~~~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~~g---~~~l~DlS 105 (164)
T 1g3g_A 29 GENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDG---NLLLNDIS 105 (164)
T ss_dssp CSSCCEEEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSSSSSEECCCCTTTTSSCEEEEECSTT---CEEEEECC
T ss_pred CCCccEEEEEecCCCCCeEEEeccccccccccccCCcEEECCCCCCCEEeCCcCCcChhHEEEEECCCC---CEEEEECC
Confidence 45678999998888887766554 89999999999999997 699999999974333 38899998
Q ss_pred CCceEEECCEEcCCCceEEeeCCCEEEEccC---CCeeEEEEecC
Q 003126 196 GKGEVEVNGNVHPKDSQVVLRGGDELVFSPS---GKHSYIFQQLS 237 (845)
Q Consensus 196 snGtV~VNGkkvgKg~kviL~~GDEIvfs~~---g~~aYIFq~l~ 237 (845)
.||| ||||+++.++..+.|..||+|.|+.. ....|+|....
T Consensus 106 ~NGT-~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~~~ 149 (164)
T 1g3g_A 106 TNGT-WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFIND 149 (164)
T ss_dssp SSCE-EETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEECH
T ss_pred CCCe-EECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEeCc
Confidence 8999 99999999999999999999999886 35678887643
No 8
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.43 E-value=4.3e-13 Score=126.18 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=84.4
Q ss_pred CCcccceeecccCCCCCceeee-cceeEeecccccceEecCCC----CccceeEEEEeecCCCceEEEEEe-cCCceEEE
Q 003126 129 GSRIPWARLISQCSQNSHLSMT-GAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEIT-GGKGEVEV 202 (845)
Q Consensus 129 ~~~~pWgRLlSq~sq~P~i~I~-~~~fTvGr~~~CDl~L~D~~----IS~~hCkI~r~e~gg~~vA~LEd~-ssnGtV~V 202 (845)
....+|+ |...-+.-..+.+. +..++|||...||++|.|.. ||..||+|...+.+ ..+|+|+ |.||| ||
T Consensus 5 ~~~~~w~-l~~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~g---~~~l~Dl~S~NGT-~v 79 (138)
T 2pie_A 5 AGGRSWC-LRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEG---QWTIMDNKSLNGV-WL 79 (138)
T ss_dssp GGCEEEE-EEETTCSSCBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECTTS---CEEEEECSCSSCE-EE
T ss_pred CCCccEE-EEEeCCCCCEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcCCC---cEEEEECCCCCCe-EE
Confidence 4456797 55455555577887 77899999999999999998 99999999974333 3899999 56999 99
Q ss_pred CCEEcCCCceEEeeCCCEEEEccC----CCeeEEEEecC
Q 003126 203 NGNVHPKDSQVVLRGGDELVFSPS----GKHSYIFQQLS 237 (845)
Q Consensus 203 NGkkvgKg~kviL~~GDEIvfs~~----g~~aYIFq~l~ 237 (845)
||+++.++..+.|+.||+|.|+.+ ....|.|+...
T Consensus 80 Ng~~l~~~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~~ 118 (138)
T 2pie_A 80 NRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTE 118 (138)
T ss_dssp TTEECCTTCCEECCTTCEEEESCCCTTCSSCSEEEEEEE
T ss_pred CCEEcCCCCcEECCCCCEEEECCCCCCCceEEEEEEecc
Confidence 999999999999999999999985 33567776553
No 9
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.35 E-value=1.4e-12 Score=128.91 Aligned_cols=106 Identities=19% Similarity=0.267 Sum_probs=81.7
Q ss_pred CCcccceeecccCCC--CCceeeecce--eEeecccccceEecCCCCccceeEEEEeec-CCC----------ceEEEEE
Q 003126 129 GSRIPWARLISQCSQ--NSHLSMTGAV--FTVGHNRQCDLYLKDPSISKNLCRLRRIEN-GGP----------SGALLEI 193 (845)
Q Consensus 129 ~~~~pWgRLlSq~sq--~P~i~I~~~~--fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~-gg~----------~vA~LEd 193 (845)
.....|..|.+.... ...+.|.... |+|||+..||++|.|..||..||.|..... .|. ...+|+|
T Consensus 24 ~~~g~~l~L~~~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~D 103 (182)
T 1qu5_A 24 KGNGRFLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCH 103 (182)
T ss_dssp SSSSCCEEECCCTTSSSCSCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECC
T ss_pred CCCccEEEEEeCCCCCcceEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEE
Confidence 334456666665543 3566777666 999999999999999999999999997541 111 3579999
Q ss_pred ecCCceEEECCEEcCCCceEEeeCCCEEEEccC--CCeeEEEEe
Q 003126 194 TGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPS--GKHSYIFQQ 235 (845)
Q Consensus 194 ~ssnGtV~VNGkkvgKg~kviL~~GDEIvfs~~--g~~aYIFq~ 235 (845)
+|.||| ||||++|.+|..+.|..||+|.|... |...++|..
T Consensus 104 lStNGT-~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 146 (182)
T 1qu5_A 104 TGTNVS-YLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKV 146 (182)
T ss_dssp CSSSCC-EETTEECCSSEEEECCTTBCCEEEEEGGGTEEEECCE
T ss_pred CCcCCe-EECCEEcCCCcceEcCCCCEEEEEEcCCCCEEEEEEE
Confidence 999999 99999999999999999999999332 344555553
No 10
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.33 E-value=5.4e-12 Score=115.16 Aligned_cols=94 Identities=22% Similarity=0.293 Sum_probs=76.7
Q ss_pred CCcccceeecccCCCC--Cceeeec-ceeEeecc-cccceEecCCCCccceeEEEEeecCCCceEEEEEe-cCCceEEEC
Q 003126 129 GSRIPWARLISQCSQN--SHLSMTG-AVFTVGHN-RQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVN 203 (845)
Q Consensus 129 ~~~~pWgRLlSq~sq~--P~i~I~~-~~fTvGr~-~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~-ssnGtV~VN 203 (845)
....||.+|.-..... -.+.|.. ..++|||. ..||++|.|..||..||+|.... + ..+|+|+ |.||| |||
T Consensus 7 ~~~~p~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~-~---~~~l~Dl~S~nGT-~vn 81 (118)
T 1uht_A 7 GMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS-G---NWVIQDLGSSNGT-LLN 81 (118)
T ss_dssp CCCSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS-S---SEEEECCCCSSCC-EES
T ss_pred CCCCCeEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEEC-C---EEEEEECCCCCCe-EEC
Confidence 3456777777655433 3456765 67999999 89999999999999999999732 2 3899999 56999 999
Q ss_pred CEEcCCCceEEeeCCCEEEEccCC
Q 003126 204 GNVHPKDSQVVLRGGDELVFSPSG 227 (845)
Q Consensus 204 GkkvgKg~kviL~~GDEIvfs~~g 227 (845)
|+++.++..+.|+.||+|.|+...
T Consensus 82 g~~l~~~~~~~L~~gd~i~lG~~~ 105 (118)
T 1uht_A 82 SNALDPETSVNLGDGDVIKLGEYT 105 (118)
T ss_dssp SSBCCTTCEEECCTTEEEEETTTE
T ss_pred CEECCCCCeEEcCCCCEEEECCeE
Confidence 999999999999999999997643
No 11
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.32 E-value=4.9e-12 Score=119.18 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=83.1
Q ss_pred CCCcccceeecccCCCC---CceeeecceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEec-CCceEEEC
Q 003126 128 VGSRIPWARLISQCSQN---SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVN 203 (845)
Q Consensus 128 ~~~~~pWgRLlSq~sq~---P~i~I~~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~s-snGtV~VN 203 (845)
.....+||+|.-..... ..+.|....++|||...||++|.|+.||..||.|.....++ ..+|+|++ .||| |||
T Consensus 18 ~~~~~p~g~L~v~~g~~~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~--~~~l~Dl~S~NGT-~vN 94 (132)
T 3va4_A 18 GSHMEPIGQLRLFSGTHGPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNK--APILQDCGSLNGT-QIV 94 (132)
T ss_dssp --CCCCSEEEEECCBTTBSCEEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTS--CCEEEECSCSSCE-EET
T ss_pred cccCCCcEEEEEEeCCCCCceEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCC--EEEEEECCCCCCe-EEC
Confidence 35567999999877655 34588888999999999999999999999999999753333 26799995 5898 999
Q ss_pred CEE--cCCCceEEeeCCCEEEEccCCCeeEEEEec
Q 003126 204 GNV--HPKDSQVVLRGGDELVFSPSGKHSYIFQQL 236 (845)
Q Consensus 204 Gkk--vgKg~kviL~~GDEIvfs~~g~~aYIFq~l 236 (845)
|++ +.++..+.|+.||+|.|+. ..+.|..+
T Consensus 95 g~~i~l~~~~~~~L~~GD~I~lG~---~~l~f~~~ 126 (132)
T 3va4_A 95 KPPRVLPPGVSHRLRDQELILFAD---FPCQYHRL 126 (132)
T ss_dssp TTTEEECTTCCEECCTTCEEEETT---EEEEEEEC
T ss_pred CEEcccCCCCEEECCCCCEEEECC---EEEEEEEC
Confidence 998 6888999999999999964 45566543
No 12
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.30 E-value=6.5e-12 Score=121.15 Aligned_cols=101 Identities=20% Similarity=0.311 Sum_probs=78.1
Q ss_pred ceeecccCCC--CCceeeecce--eEeecccccceEecCCCCccceeEEEEeecC-CC----------ceEEEEEecCCc
Q 003126 134 WARLISQCSQ--NSHLSMTGAV--FTVGHNRQCDLYLKDPSISKNLCRLRRIENG-GP----------SGALLEITGGKG 198 (845)
Q Consensus 134 WgRLlSq~sq--~P~i~I~~~~--fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~g-g~----------~vA~LEd~ssnG 198 (845)
|=.|.|.... ...+.|.... |+|||+..||++|.|..||..||.|.+.... +. ...+|+|+|.||
T Consensus 5 ~l~L~p~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlStNG 84 (158)
T 1dmz_A 5 FLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNV 84 (158)
T ss_dssp CEEEEECTTSSCCCCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECSTTC
T ss_pred EEEEEeCCCCccceEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEECCcCC
Confidence 4445554432 3456777666 9999999999999999999999999975411 11 357999999999
Q ss_pred eEEECCEEcCCCceEEeeCCCEEEEccC--CCeeEEEEe
Q 003126 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS--GKHSYIFQQ 235 (845)
Q Consensus 199 tV~VNGkkvgKg~kviL~~GDEIvfs~~--g~~aYIFq~ 235 (845)
| ||||++|.+|..+.|..||+|.|... |...+.|..
T Consensus 85 T-~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 122 (158)
T 1dmz_A 85 S-YLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKV 122 (158)
T ss_dssp C-EETTEECCSSEEEECCSSCCEESCCCTTTTCCCCEEE
T ss_pred e-EECCEEcCCCceEEcCCCCEEEEeecCCCCEEEEEEE
Confidence 9 99999999999999999999999332 334455553
No 13
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.30 E-value=4e-12 Score=120.68 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=80.6
Q ss_pred CCcccceeecccCCCCCceee-ecceeEeecccccceEecCCC----CccceeEEEEeecCCCceEEEEEe-cCCceEEE
Q 003126 129 GSRIPWARLISQCSQNSHLSM-TGAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEIT-GGKGEVEV 202 (845)
Q Consensus 129 ~~~~pWgRLlSq~sq~P~i~I-~~~~fTvGr~~~CDl~L~D~~----IS~~hCkI~r~e~gg~~vA~LEd~-ssnGtV~V 202 (845)
.....|+.+ ..-+....+.+ .+..|+|||...||++|.|.. ||..||+|.+.+.+ ..+|+|+ |.||| ||
T Consensus 13 ~~~~~w~L~-~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~g---~~~l~Dl~S~NGT-~v 87 (145)
T 2csw_A 13 AGGRSWCLR-RVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEG---QWTIMDNKSLNGV-WL 87 (145)
T ss_dssp TCSEEEEEC-CTTCSCCBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECTTS---CEEEEBSSCSSCE-EE
T ss_pred CCCccEEEE-EeCCCCCeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcCCC---eEEEEECCCCCCe-EE
Confidence 446678855 33344445566 456799999999999999998 99999999974333 3789997 55999 99
Q ss_pred CCEEcCCCceEEeeCCCEEEEccC----CCeeEEEEec
Q 003126 203 NGNVHPKDSQVVLRGGDELVFSPS----GKHSYIFQQL 236 (845)
Q Consensus 203 NGkkvgKg~kviL~~GDEIvfs~~----g~~aYIFq~l 236 (845)
||+++.++..+.|+.||+|.|+.+ ....|+|+..
T Consensus 88 Ng~~i~~~~~~~L~~GD~I~iG~~~~~g~~~~f~~~~~ 125 (145)
T 2csw_A 88 NRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVT 125 (145)
T ss_dssp SSCBCCBTCCEECCSSCCEEESCCCTTCSSCSCCCCEE
T ss_pred CCEECCCCccEECCCCCEEEECCCCCCCceEEEEEEec
Confidence 999999999999999999999985 2345555543
No 14
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.27 E-value=5.2e-12 Score=116.96 Aligned_cols=100 Identities=25% Similarity=0.422 Sum_probs=79.0
Q ss_pred CCCcccceeecccCC---CCCceeeecceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEec-CCceEEEC
Q 003126 128 VGSRIPWARLISQCS---QNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVN 203 (845)
Q Consensus 128 ~~~~~pWgRLlSq~s---q~P~i~I~~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~s-snGtV~VN 203 (845)
+....+|++|+-... .-..+.|....++|||...||++|.|..||..||.|.... + ..+|+|++ .||| |||
T Consensus 6 ~g~~~~~~~L~v~~~~~~~g~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~-~---~~~l~Dl~S~nGt-~vN 80 (128)
T 1r21_A 6 PGGMWPTRRLVTIKRSGVDGPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIHE-Q---EAILHNFSSTNPT-QVN 80 (128)
T ss_dssp ---CCCCEEEEEEEETTEEEEEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECS-S---CEEECCCCSSSCC-EET
T ss_pred CCCCCCceEEEEEeCCCCCceEEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEEC-C---EEEEEECCCCCCE-EEC
Confidence 355677888886542 2334688888999999999999999999999999999742 2 38899996 5999 999
Q ss_pred CEEcCCCceEEeeCCCEEEEccCCCeeEEEEecC
Q 003126 204 GNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLS 237 (845)
Q Consensus 204 GkkvgKg~kviL~~GDEIvfs~~g~~aYIFq~l~ 237 (845)
|+++.+ .+.|+.||+|.|+. ..|.|....
T Consensus 81 g~~i~~--~~~L~~Gd~i~iG~---~~~~~~~~~ 109 (128)
T 1r21_A 81 GSVIDE--PVRLKHGDVITIID---RSFRYENES 109 (128)
T ss_dssp TEECSS--CEECCTTEEEECSS---CEEEEEEC-
T ss_pred CEECCC--cEEcCCCCEEEECC---EEEEEEeCC
Confidence 999984 79999999999963 567777653
No 15
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.25 E-value=1.6e-11 Score=115.13 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=65.9
Q ss_pred ceeeecceeEeecccccceEecCCCCccceeEEEEeec-CCCceEEEEEe------cCCceEEECCEEcCCCceEEeeCC
Q 003126 146 HLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIEN-GGPSGALLEIT------GGKGEVEVNGNVHPKDSQVVLRGG 218 (845)
Q Consensus 146 ~i~I~~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~-gg~~vA~LEd~------ssnGtV~VNGkkvgKg~kviL~~G 218 (845)
.+.|....|+|||...||++|.|+.||..||+|.+... +|....+|+|+ |.||| ||||++|.+ +.|+.|
T Consensus 24 ~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT-~vNg~~i~~---~~L~~G 99 (131)
T 3hx1_A 24 EVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGL-MINGKKVQE---HIIQTG 99 (131)
T ss_dssp EEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCE-EETTEEESE---EECCTT
T ss_pred EEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCce-EECCEEeEe---EECCCC
Confidence 45788889999999999999999999999999987532 23334889998 77999 999999986 999999
Q ss_pred CEEEEccCCC
Q 003126 219 DELVFSPSGK 228 (845)
Q Consensus 219 DEIvfs~~g~ 228 (845)
|+|.|+....
T Consensus 100 D~I~iG~~~~ 109 (131)
T 3hx1_A 100 DEIVMGPQVS 109 (131)
T ss_dssp CEEECSTTCE
T ss_pred CEEEECCEEE
Confidence 9999977543
No 16
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.7e-11 Score=118.84 Aligned_cols=89 Identities=21% Similarity=0.293 Sum_probs=74.2
Q ss_pred ceeee-cceeEeeccc---------------ccceEecCCCCccceeEEEEeecCCCceEEEEEe-cCCceEEECCEEcC
Q 003126 146 HLSMT-GAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHP 208 (845)
Q Consensus 146 ~i~I~-~~~fTvGr~~---------------~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~-ssnGtV~VNGkkvg 208 (845)
.+.|. ...|+|||.. .|||+|.++.||..||.|.....++....+|+|+ |.||| ||||+++.
T Consensus 49 ~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT-~VNg~ri~ 127 (158)
T 3els_A 49 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGT-CLNNVVIP 127 (158)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCC-EETTEECC
T ss_pred EEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCcc-EECCEEcC
Confidence 45555 4569999984 5999999999999999999865554455899999 66999 99999999
Q ss_pred CCceEEeeCCCEEEEccCC---CeeEEEEe
Q 003126 209 KDSQVVLRGGDELVFSPSG---KHSYIFQQ 235 (845)
Q Consensus 209 Kg~kviL~~GDEIvfs~~g---~~aYIFq~ 235 (845)
++..+.|+.||+|.|+.+. ..-|+|..
T Consensus 128 ~~~~~~L~~GD~I~~G~s~~~~~~elvF~~ 157 (158)
T 3els_A 128 GARYIELRSGDVLTLSEFEEDNDYELIFMN 157 (158)
T ss_dssp TTCCEECCTTEEEESSSCGGGCCEEEEEEE
T ss_pred CCceEEcCCCCEEEECCCCCCCCEEEEEEe
Confidence 9999999999999999765 46666653
No 17
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.23 E-value=3.9e-11 Score=106.57 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=68.2
Q ss_pred CCCCceeeecceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEec-CCceEEECCEEcCCCceEEeeCCCE
Q 003126 142 SQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDE 220 (845)
Q Consensus 142 sq~P~i~I~~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~s-snGtV~VNGkkvgKg~kviL~~GDE 220 (845)
..-..+.|....++|||+..||++|.|+.||..||.|.+. ++ ..+|+|++ .||| ||||+++. .+.|+.||+
T Consensus 13 g~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~--~~~l~Dl~S~nGt-~vng~~i~---~~~L~~gd~ 84 (100)
T 3po8_A 13 GSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD--GQ--VALLADLNSTNGT-TVNNAPVQ---EWQLADGDV 84 (100)
T ss_dssp SSCCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEEC--SS--CEEEEECSCSSCC-EETTEECS---EEECCTTCE
T ss_pred CCCcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEe--CC--EEEEEECCCCCCE-EECCEECc---eEECCCCCE
Confidence 3345567888889999999999999999999999999973 22 27899995 5898 99999997 689999999
Q ss_pred EEEccCCCeeEEEE
Q 003126 221 LVFSPSGKHSYIFQ 234 (845)
Q Consensus 221 Ivfs~~g~~aYIFq 234 (845)
|.|+. ..+.|+
T Consensus 85 i~iG~---~~~~~~ 95 (100)
T 3po8_A 85 IRLGH---SEIIVR 95 (100)
T ss_dssp EEETT---EEEEEE
T ss_pred EEECC---EEEEEE
Confidence 99965 345554
No 18
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.23 E-value=5.6e-11 Score=108.38 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=69.9
Q ss_pred CCCceeeecceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEe-cCCceEEECCEEcCCCceEEeeCCCEE
Q 003126 143 QNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDEL 221 (845)
Q Consensus 143 q~P~i~I~~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~-ssnGtV~VNGkkvgKg~kviL~~GDEI 221 (845)
.-..+.|....++|||...||++|.|+.||..||+|... ++ ..+|+|+ |.||| ||||+++. .+.|..||+|
T Consensus 22 ~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~--~~~l~Dl~S~nGt-~vng~~i~---~~~L~~gd~i 93 (115)
T 2xt9_B 22 AGSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLE--GG--EFQVVDVGSLNGT-YVNREPVD---SAVLANGDEV 93 (115)
T ss_dssp TTCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEE--TT--EEEEEECSCSSCE-EETTEECS---EEEECTTCEE
T ss_pred CCeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEE--CC--EEEEEECCCCCCe-EECCEEcc---eEECCCCCEE
Confidence 345568888899999999999999999999999999974 22 3899999 46898 99999998 6899999999
Q ss_pred EEccCCCeeEEEEecC
Q 003126 222 VFSPSGKHSYIFQQLS 237 (845)
Q Consensus 222 vfs~~g~~aYIFq~l~ 237 (845)
.|+. ..|.|....
T Consensus 94 ~iG~---~~l~~~~~~ 106 (115)
T 2xt9_B 94 QIGK---FRLVFLTGP 106 (115)
T ss_dssp EETT---EEEEEEC--
T ss_pred EECC---EEEEEEeCC
Confidence 9965 566776543
No 19
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.19 E-value=8.1e-11 Score=112.24 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=69.0
Q ss_pred CceeeecceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEec-CCceEEECCEEcCCCceEEeeCCCEEEE
Q 003126 145 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (845)
Q Consensus 145 P~i~I~~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~s-snGtV~VNGkkvgKg~kviL~~GDEIvf 223 (845)
..+.|....++|||+..|||+|.|..||..||+|.+. ++ ..+|+|++ .||| ||||+++. .+.|+.||+|.|
T Consensus 59 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~--~~--~~~l~DlgS~NGT-~VNg~~i~---~~~L~~GD~I~i 130 (143)
T 2kb3_A 59 ARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRIN--EG--EFEVVDVGSLNGT-YVNREPRN---AQVMQTGDEIQI 130 (143)
T ss_dssp CEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEE--TT--EEEEEESCCSSCC-EETTEECS---EEECCTTEEEEE
T ss_pred eEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEE--CC--EEEEEECCCcCCe-EECCEEcc---eEECCCCCEEEE
Confidence 3456778899999999999999999999999999983 22 38899995 5999 99999998 689999999999
Q ss_pred ccCCCeeEEEEecC
Q 003126 224 SPSGKHSYIFQQLS 237 (845)
Q Consensus 224 s~~g~~aYIFq~l~ 237 (845)
+. ..|.|....
T Consensus 131 G~---~~l~f~~~~ 141 (143)
T 2kb3_A 131 GK---FRLVFLAGP 141 (143)
T ss_dssp TT---EEEEEEECC
T ss_pred CC---EEEEEEeCC
Confidence 64 567776543
No 20
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.16 E-value=1.2e-11 Score=116.55 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=69.6
Q ss_pred ceeeecc-eeEeecccc-cceEecCCCCccceeEEEEeecCCCceEEEEEe-cCCceEEECCEEcCCCceEEeeCCCEEE
Q 003126 146 HLSMTGA-VFTVGHNRQ-CDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (845)
Q Consensus 146 ~i~I~~~-~fTvGr~~~-CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~-ssnGtV~VNGkkvgKg~kviL~~GDEIv 222 (845)
.+.|... .|+|||... |||+|.|..||..||+|.+...++ ..+|+|+ |.||| ||||+++.++..+.|..||+|.
T Consensus 48 ~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~--~~~l~Dl~S~NGT-~vNg~~l~~~~~~~L~~gd~i~ 124 (140)
T 2jpe_A 48 KLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLK--RVFLIDLNSTHGT-FLGHIRLEPHKPQQIPIDSTVS 124 (140)
T ss_dssp EECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSC--CEEEECCSCSSCE-ESSSCEECSSSCCEECTTCCBB
T ss_pred EEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCC--cEEEEECCCCCCe-EECCEECCCCccEECCCCCEEE
Confidence 3466654 599999998 999999999999999999753212 3789998 55998 9999999999999999999999
Q ss_pred EccCCCeeEEEE
Q 003126 223 FSPSGKHSYIFQ 234 (845)
Q Consensus 223 fs~~g~~aYIFq 234 (845)
|+.... .|+|.
T Consensus 125 ~G~~~~-~f~~~ 135 (140)
T 2jpe_A 125 FGASTR-AYTLR 135 (140)
T ss_dssp CSSCCC-CBCCB
T ss_pred ECCceE-EEEEe
Confidence 987543 35544
No 21
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.14 E-value=1.1e-10 Score=118.21 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=69.8
Q ss_pred ceeee-cceeEeeccc---------------ccceEecCCCCccceeEEEEeecCCCceEEEEEe-cCCceEEECCEEcC
Q 003126 146 HLSMT-GAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHP 208 (845)
Q Consensus 146 ~i~I~-~~~fTvGr~~---------------~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~-ssnGtV~VNGkkvg 208 (845)
.+.|. .+.|+|||.. .|||+|.|+.||..||.|.....++....+|+|+ |+||| ||||++|.
T Consensus 96 ~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGT-fVNG~rI~ 174 (205)
T 3elv_A 96 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGT-CLNNVVIP 174 (205)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCC-EETTEECC
T ss_pred EEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCC-eECCEECC
Confidence 56674 5789999984 4999999999999999998755554456889999 55999 99999999
Q ss_pred CCceEEeeCCCEEEEccCC
Q 003126 209 KDSQVVLRGGDELVFSPSG 227 (845)
Q Consensus 209 Kg~kviL~~GDEIvfs~~g 227 (845)
++..+.|..||+|.|+.+.
T Consensus 175 ~~~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 175 GARYIELRSGDVLTLSEFE 193 (205)
T ss_dssp BTSCEECCTTCEEESSSSG
T ss_pred CCceeECCCCCEEEECCCC
Confidence 9999999999999999865
No 22
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.14 E-value=1.7e-10 Score=103.70 Aligned_cols=79 Identities=19% Similarity=0.314 Sum_probs=65.4
Q ss_pred eeeecc-eeEeeccc-ccceEecCCCCccceeEEEEeecCCCceEEEEEe-cCCceEEECCEEcCCCceEEeeCCCEEEE
Q 003126 147 LSMTGA-VFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (845)
Q Consensus 147 i~I~~~-~fTvGr~~-~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~-ssnGtV~VNGkkvgKg~kviL~~GDEIvf 223 (845)
+.|... .|+|||.. .||++|.|+.||..||.|.....+. .+|+|+ |.||| ||||+++.+ .+.|..||+|.|
T Consensus 19 ~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~~---~~l~Dl~S~nGt-~vng~~i~~--~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 19 FHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGNDNS---VLIEDLGSKNGV-IVEGRKIEH--QSTLSANQVVAL 92 (106)
T ss_dssp EEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECTTSC---EEEEECSCSSCC-EETTEECSS--EEECCTTCCEEE
T ss_pred EEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECCCCc---EEEEECcCCCCe-EECCEECCC--CeECCCCCEEEE
Confidence 466654 59999999 7999999999999999999742332 889999 55899 999999987 689999999999
Q ss_pred ccCCCeeEEEE
Q 003126 224 SPSGKHSYIFQ 234 (845)
Q Consensus 224 s~~g~~aYIFq 234 (845)
+. ..|.|.
T Consensus 93 G~---~~~~~~ 100 (106)
T 3gqs_A 93 GT---TLFLLV 100 (106)
T ss_dssp TT---EEEEEE
T ss_pred CC---EEEEEE
Confidence 65 455555
No 23
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.14 E-value=9.2e-11 Score=110.45 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=66.3
Q ss_pred eeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEec-CCceEEECCEEcCC--------CceEEeeCCCEEEE
Q 003126 153 VFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPK--------DSQVVLRGGDELVF 223 (845)
Q Consensus 153 ~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~s-snGtV~VNGkkvgK--------g~kviL~~GDEIvf 223 (845)
.|+|||...||++|.|..||..||+|.....+ ...+|+|++ .||| ||||+++.+ +..+.|+.||+|.|
T Consensus 33 ~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~--~~~~l~DlgS~NGT-~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 33 PVKLGRVSPSDLALKDSEVSGKHAQITWNSTK--FKWELVDMGSLNGT-LVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp SEEEESSSSCSEECCCTTSSSEEEEEEEETTT--TEEEEEETTCSSCC-EETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred eEEeeCCCCCCEEeCCCCCChHHcEEEEECCC--CEEEEEECCCCCCE-EECCEECcCcccccccCCceEECCCCCEEEE
Confidence 79999999999999999999999999975432 247999995 6999 999999995 88999999999999
Q ss_pred ccCCCeeEEEEec
Q 003126 224 SPSGKHSYIFQQL 236 (845)
Q Consensus 224 s~~g~~aYIFq~l 236 (845)
+. ..++|..+
T Consensus 110 G~---~~~~~~~~ 119 (139)
T 1mzk_A 110 GT---TTKVYVRI 119 (139)
T ss_dssp SS---SCEEEEEE
T ss_pred CC---EEEEEEEc
Confidence 65 34565544
No 24
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.13 E-value=2e-10 Score=110.55 Aligned_cols=84 Identities=24% Similarity=0.428 Sum_probs=69.0
Q ss_pred eeecceeEeeccc---ccceEecCCCCccceeEEEEeecCCC-ceEEEEEecCCceEEECCEEcCCCceEEeeCCCEEEE
Q 003126 148 SMTGAVFTVGHNR---QCDLYLKDPSISKNLCRLRRIENGGP-SGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (845)
Q Consensus 148 ~I~~~~fTvGr~~---~CDl~L~D~~IS~~hCkI~r~e~gg~-~vA~LEd~ssnGtV~VNGkkvgKg~kviL~~GDEIvf 223 (845)
.|....++|||.. .|||+|.++.||..||.|.+...++. .+++++..+.||| ||||+.|.+ .+.|+.||+|.|
T Consensus 57 ~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt-~VNG~~i~~--~~~L~~GD~I~~ 133 (154)
T 4ejq_A 57 YIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADT-YVNGKKVTE--PSILRSGNRIIM 133 (154)
T ss_dssp ECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCE-EETTEECCS--CEECCTTCEEEE
T ss_pred EeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCce-EECCEEcCC--ceECCCCCEEEE
Confidence 5667789999976 79999999999999999998655443 4566777778998 999999954 689999999999
Q ss_pred ccCCCeeEEEEec
Q 003126 224 SPSGKHSYIFQQL 236 (845)
Q Consensus 224 s~~g~~aYIFq~l 236 (845)
+. .|.|.|.+.
T Consensus 134 G~--~~~Frf~~P 144 (154)
T 4ejq_A 134 GK--SHVFRFNHP 144 (154)
T ss_dssp TT--TEEEEEECH
T ss_pred CC--cEEEEEcCh
Confidence 74 467888753
No 25
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.12 E-value=3.1e-10 Score=110.63 Aligned_cols=82 Identities=22% Similarity=0.312 Sum_probs=68.9
Q ss_pred CceeeecceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEec-CCceEEECCEEcCCCceEEeeCCCEEEE
Q 003126 145 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (845)
Q Consensus 145 P~i~I~~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~s-snGtV~VNGkkvgKg~kviL~~GDEIvf 223 (845)
..+.|....++|||+..|||+|.|..||..||+|.+. ++ ..+|+|++ .||| ||||+++. .+.|+.||+|.|
T Consensus 68 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~--~~--~~~l~DlgS~NGT-~VNg~~i~---~~~L~~GD~I~i 139 (162)
T 2kfu_A 68 SRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLE--NN--EFNVVDVGSLNGT-YVNREPVD---SAVLANGDEVQI 139 (162)
T ss_dssp CEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEE--TT--EEEEECCCCSSCE-EETTBCCS---EEECCSSCEEEE
T ss_pred eEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEE--CC--EEEEEECCCCCCe-EECCEEcc---eEECCCCCEEEE
Confidence 4456777889999999999999999999999999984 22 38999995 5888 99999997 589999999999
Q ss_pred ccCCCeeEEEEecC
Q 003126 224 SPSGKHSYIFQQLS 237 (845)
Q Consensus 224 s~~g~~aYIFq~l~ 237 (845)
+. ..|+|..-.
T Consensus 140 G~---~~l~f~~~~ 150 (162)
T 2kfu_A 140 GK---FRLVFLTGP 150 (162)
T ss_dssp TT---EEEEEECSC
T ss_pred CC---EEEEEEeCC
Confidence 64 566776543
No 26
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.08 E-value=4.5e-10 Score=120.45 Aligned_cols=96 Identities=19% Similarity=0.260 Sum_probs=79.4
Q ss_pred CcccceeecccCCCCCceeeecceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEec-CCceEEECCEEcC
Q 003126 130 SRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHP 208 (845)
Q Consensus 130 ~~~pWgRLlSq~sq~P~i~I~~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~s-snGtV~VNGkkvg 208 (845)
...||..|+... .-..+.|....++|||+..||++|.|..||..||+|... ++ ..+|+|++ .||| ||||+++.
T Consensus 285 ~~~~~~~l~~~~-~g~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~--~~--~~~l~Dl~S~nGt-~vng~~i~ 358 (388)
T 2ff4_A 285 GQQAVAYLHDIA-SGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDT--GT--NYVINDLRSSNGV-HVQHERIR 358 (388)
T ss_dssp SSBCCCEEEETT-TCCEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC--SS--CEEEEECSCSSCC-EETTEECS
T ss_pred CCCCeEEEEECC-CCcEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEE--CC--EEEEEECCCCCCe-EECCEECC
Confidence 457899998643 235678999999999999999999999999999999973 22 27899985 5999 99999995
Q ss_pred CCceEEeeCCCEEEEccCCCeeEEEEec
Q 003126 209 KDSQVVLRGGDELVFSPSGKHSYIFQQL 236 (845)
Q Consensus 209 Kg~kviL~~GDEIvfs~~g~~aYIFq~l 236 (845)
..+.|++||+|.|+. ..|+|...
T Consensus 359 --~~~~L~~gd~i~~G~---~~~~~~~~ 381 (388)
T 2ff4_A 359 --SAVTLNDGDHIRICD---HEFTFQIS 381 (388)
T ss_dssp --SEEEECTTCEEEETT---EEEEEECS
T ss_pred --CceECCCCCEEEECC---EEEEEEeC
Confidence 589999999999965 56777643
No 27
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.07 E-value=4.1e-10 Score=109.63 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=66.9
Q ss_pred CCCceeeecceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEe-cCCceEEECCEEcCCCceEEeeCCCEE
Q 003126 143 QNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDEL 221 (845)
Q Consensus 143 q~P~i~I~~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~-ssnGtV~VNGkkvgKg~kviL~~GDEI 221 (845)
.--.+.|....++|||...|||+|.|..||..||+|.... + ..+|+|+ |.||| ||||++|. .+.|+.||+|
T Consensus 76 ~g~~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~~-~---~~~l~DlgStNGT-~VNG~~i~---~~~L~~GD~I 147 (157)
T 3oun_A 76 SGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDG-Q---VALLADLNSTNGT-TVNNAPVQ---EWQLADGDVI 147 (157)
T ss_dssp TCCEEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEECS-S---CEEEEECSCSSCC-EETTEECS---EEECCTTCEE
T ss_pred CCeEEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEEC-C---EEEEEECCCCCCe-EECCEECc---eEECCCCCEE
Confidence 3445678888899999999999999999999999999732 2 2889999 55999 99999996 6899999999
Q ss_pred EEccCCCeeEEE
Q 003126 222 VFSPSGKHSYIF 233 (845)
Q Consensus 222 vfs~~g~~aYIF 233 (845)
.|+. ..++|
T Consensus 148 ~lG~---~~l~f 156 (157)
T 3oun_A 148 RLGH---SEIIV 156 (157)
T ss_dssp EETT---EEEEE
T ss_pred EECC---EEEEE
Confidence 9965 34444
No 28
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.06 E-value=5.1e-10 Score=102.87 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=67.5
Q ss_pred eeeecceeEeec--ccccceEecCCCCccceeEEEEeecCCCceEEEEEec-CCceEEECCEEcCCCceEEeeCCCEEEE
Q 003126 147 LSMTGAVFTVGH--NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (845)
Q Consensus 147 i~I~~~~fTvGr--~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~s-snGtV~VNGkkvgKg~kviL~~GDEIvf 223 (845)
+.|....++||| +..|||+|.+..||..||.|... ++ ..+|+|++ .||| ||||++|. ..+.|+.||+|.|
T Consensus 31 ~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~--~~--~~~l~dl~S~ngt-~vNg~~i~--~~~~L~~GD~I~i 103 (120)
T 1wln_A 31 YRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--DG--VVTVTPRSMDAET-YVDGQRIS--ETTMLQSGMRLQF 103 (120)
T ss_dssp EECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES--SS--CEEEEESCSSSCE-EETSCBCS--SCEEECTTCEEEE
T ss_pred EEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEc--CC--EEEEEECCCCCCE-EECCEEcC--CCEECCCCCEEEE
Confidence 477778899996 57999999999999999999973 22 37899996 5888 99999998 4689999999999
Q ss_pred ccCCCeeEEEEec
Q 003126 224 SPSGKHSYIFQQL 236 (845)
Q Consensus 224 s~~g~~aYIFq~l 236 (845)
+. .+.|.|...
T Consensus 104 G~--~~~~~f~~p 114 (120)
T 1wln_A 104 GT--SHVFKFVDP 114 (120)
T ss_dssp TT--TEEEEEECS
T ss_pred CC--ceEEEEECC
Confidence 76 367777643
No 29
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.03 E-value=1.4e-09 Score=101.96 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=70.4
Q ss_pred CCCCcccceeecccCCCCCce---eeecceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEecCCceEEEC
Q 003126 127 KVGSRIPWARLISQCSQNSHL---SMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVN 203 (845)
Q Consensus 127 k~~~~~pWgRLlSq~sq~P~i---~I~~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~ssnGtV~VN 203 (845)
+.+...|.=..+.-+++-..+ .| +...+|||...|||+|.+..||..||.|...+.| .++|++.++||| |||
T Consensus 21 ~~~~~~PhLvnLn~Dp~~s~~l~y~L-~~~t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~~g---~~~l~dl~~ngt-~VN 95 (124)
T 3fm8_A 21 KVGDDKCFLVNLNADPALNELLVYYL-KEHTLIGSANSQDIQLCGMGILPEHCIIDITSEG---QVMLTPQKNTRT-FVN 95 (124)
T ss_dssp ------CEEEETTCCTTSSCCCEEEC-CSEEEEESSTTCSEECCSTTCCSSCEEEEECTTS---CEEEEECTTCCE-EET
T ss_pred eecCCccEEEEeCCCCccCceEEEEC-CCCeEECCCCCCCEEECCCCeecceEEEEECCCC---eEEEEECCCCCE-EEC
Confidence 334445544444333333322 23 3358999999999999999999999999863333 378999999988 999
Q ss_pred CEEcCCCceEEeeCCCEEEEccCCCeeEEEE
Q 003126 204 GNVHPKDSQVVLRGGDELVFSPSGKHSYIFQ 234 (845)
Q Consensus 204 GkkvgKg~kviL~~GDEIvfs~~g~~aYIFq 234 (845)
|+.|.+ .+.|+.||.|.|+. .+.|.|.
T Consensus 96 G~~V~~--~~~L~~GD~I~lG~--~~~FrFn 122 (124)
T 3fm8_A 96 GSSVSS--PIQLHHGDRILWGN--NHFFRLN 122 (124)
T ss_dssp TEECCS--CEEECTTCEEEETT--TEEEEEE
T ss_pred CEEcCC--cEECCCCCEEEECC--CeEEEEE
Confidence 999973 78999999999975 4566664
No 30
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.89 E-value=6.3e-09 Score=96.46 Aligned_cols=96 Identities=15% Similarity=0.125 Sum_probs=80.2
Q ss_pred ceeecccCCCCCceeee--cceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEecCCceEEECCEEcCCCc
Q 003126 134 WARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDS 211 (845)
Q Consensus 134 WgRLlSq~sq~P~i~I~--~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~ssnGtV~VNGkkvgKg~ 211 (845)
-|.|.|++...|.|.|. .-.++|||++ ...++|..+|..||+|+ ++..+. .+.+-++|.|++ +|||++++||.
T Consensus 9 ~c~L~~~~~~~~~I~Lp~~~g~~viGR~p--~t~I~DkrcSR~hv~L~-ad~~~~-~v~vk~lG~Np~-~vng~~l~k~~ 83 (110)
T 2brf_A 9 RLWLESPPGEAPPIFLPSDGQALVLGRGP--LTQVTDRKCSRTQVELV-ADPETR-TVAVKQLGVNPS-TTGTQELKPGL 83 (110)
T ss_dssp EEEEECSTTSSCCEECCSTTCCEEECSBT--TTTBCCTTSCSSCEEEE-EETTTT-EEEEEECSSSCC-EEC-CBCCTTC
T ss_pred EEEEEeCCCCCCcEEeccCCCCEEEcCCC--CcccccccceeeeEEEE-EecCCC-EEEEEEcccCCc-EECCEEcCCCC
Confidence 48899999999999995 6889999999 44579999999999998 443333 366789999999 99999999999
Q ss_pred eEEeeCCCEEEEccCCCeeEEEEe
Q 003126 212 QVVLRGGDELVFSPSGKHSYIFQQ 235 (845)
Q Consensus 212 kviL~~GDEIvfs~~g~~aYIFq~ 235 (845)
.+.|++||.|.+ .+++|.|.++.
T Consensus 84 ~~~L~~GD~leL-l~g~y~~~v~f 106 (110)
T 2brf_A 84 EGSLGVGDTLYL-VNGLHPLTLRW 106 (110)
T ss_dssp EEEEETTCEEEE-ETTEEEEEEEE
T ss_pred EEEecCCCEEEE-ccCCeEEEEEe
Confidence 999999999988 46777777663
No 31
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=98.82 E-value=6.5e-09 Score=95.19 Aligned_cols=68 Identities=12% Similarity=0.247 Sum_probs=57.6
Q ss_pred Cceeeec-ceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEecCCceEEECCEEcCCCceEEeeCCCE
Q 003126 145 SHLSMTG-AVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDE 220 (845)
Q Consensus 145 P~i~I~~-~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~ssnGtV~VNGkkvgKg~kviL~~GDE 220 (845)
|.+.+.. ..|+|||.+.|+|+|.|++||..|+.|.+.++| .|+ ..+.||+|||||.++ ..+.|..||-
T Consensus 13 p~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G----~~~-l~S~nGtVFVNGqrv---~~~~I~~gDt 81 (102)
T 3uv0_A 13 PAILLKADTIYRIGRQKGLEISIADESMELAHATACILRRG----VVR-LAALVGKIFVNDQEE---TVVDIGMENA 81 (102)
T ss_dssp CCEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETT----EEE-EEESSSCEEETTEEE---SEEEECGGGC
T ss_pred ccEEeecCcEEEEcCCCCCcEEECCcccccceEEEEecCCc----eEE-EEeccCcEEECCEEe---eeEEccCCcc
Confidence 5554444 459999999999999999999999999998776 334 249999999999999 5899999998
No 32
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=98.80 E-value=2.5e-08 Score=91.25 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=78.5
Q ss_pred ceeecccCCCCCceeeecce-eEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEecCCceEEECCEEcCCCce
Q 003126 134 WARLISQCSQNSHLSMTGAV-FTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ 212 (845)
Q Consensus 134 WgRLlSq~sq~P~i~I~~~~-fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~ssnGtV~VNGkkvgKg~k 212 (845)
=|-|.|++...|.|.|.... ++|||++.|.+ +|..+|..||.|+--..++ .+.+-++|.|++ +|||+.++||..
T Consensus 4 ~c~L~~~~~~~~~I~L~~g~~v~iGR~p~t~I--~DkrcSR~h~~L~~~~~~g--~v~vk~lg~Np~-~vng~~l~k~~~ 78 (102)
T 3kt9_A 4 VCWLVRQDSRHQRIRLPHLEAVVIGRGPETKI--TDKKCSRQQVQLKAECNKG--YVKVKQVGVNPT-SIDSVVIGKDQE 78 (102)
T ss_dssp EEEEEETTSTTCEEECCBTCEEEECSSTTTCC--CCTTSCSSCEEEEEETTTT--EEEEEECSSSCC-EETTEECCBTCE
T ss_pred eEEEEecCCCCCcEEcCCCCcEEeccCCcccc--ccCcccCcceEEEEecCCC--EEEEEECcCCCC-eECCEEcCCCCe
Confidence 38899999999999885544 88999998855 7999999999998533232 367889999999 999999999999
Q ss_pred EEeeCCCEEEEccCCCeeEEEE
Q 003126 213 VVLRGGDELVFSPSGKHSYIFQ 234 (845)
Q Consensus 213 viL~~GDEIvfs~~g~~aYIFq 234 (845)
+.|+.||.|.+. +++|.|.+.
T Consensus 79 ~~L~~GD~l~Ll-~~~~~~~v~ 99 (102)
T 3kt9_A 79 VKLQPGQVLHMV-NELYPYIVE 99 (102)
T ss_dssp EEECTTCCEEEE-TTEEEEEEE
T ss_pred EEeCCCCEEEEc-cCCceEEEE
Confidence 999999999884 466666554
No 33
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.77 E-value=2.9e-08 Score=95.68 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=83.2
Q ss_pred ccceeecccCCCCCceeee--cceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEecCCceEEECCEEcCC
Q 003126 132 IPWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK 209 (845)
Q Consensus 132 ~pWgRLlSq~sq~P~i~I~--~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~ssnGtV~VNGkkvgK 209 (845)
.+-|.|.|++...|.|.|. .-.++|||+. ...++|...|..||+|+ ++.... .+.+-.+|.|++ +|||++++|
T Consensus 7 ~~~c~L~p~d~~~~~I~Lp~~~g~vvIGRgP--et~ItDkRcSR~qv~L~-ad~~~g-~V~Vk~lG~NP~-~vng~~L~k 81 (143)
T 1yj5_C 7 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGP--LTQVTDRKCSRNQVELI-ADPESR-TVAVKQLGVNPS-TVGVHELKP 81 (143)
T ss_dssp CEEEEEECCTTSCCCEECCTTTCEEEECSBT--TTTBCCSSSCSSCEEEE-EETTTT-EEEEEECSSSCC-EETTEECCT
T ss_pred CCeEEEEecCCCCCcEEeccCCCCEEEcCCC--ccccccccccceeEEEE-EecCCC-eEEEEEcccCCc-EECCEEecC
Confidence 4569999999999999995 6889999999 55689999999999998 433332 355789999999 999999999
Q ss_pred CceEEeeCCCEEEEccCCCeeEEEEe
Q 003126 210 DSQVVLRGGDELVFSPSGKHSYIFQQ 235 (845)
Q Consensus 210 g~kviL~~GDEIvfs~~g~~aYIFq~ 235 (845)
|..+.|++||.|.+ .++.|.|.|..
T Consensus 82 ~~~~~L~~GD~LeL-l~g~y~f~V~f 106 (143)
T 1yj5_C 82 GLSGSLSLGDVLYL-VNGLYPLTLRW 106 (143)
T ss_dssp TCEEEECTTCEEES-SSSCSEEEEEE
T ss_pred CCEEEecCCCEEEE-ecCCceEEEEe
Confidence 99999999999988 56777877775
No 34
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.71 E-value=1.7e-08 Score=94.79 Aligned_cols=99 Identities=15% Similarity=0.081 Sum_probs=83.3
Q ss_pred ccceeecccCCCCCceeee--cceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEecCCceEEECCEEcCC
Q 003126 132 IPWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK 209 (845)
Q Consensus 132 ~pWgRLlSq~sq~P~i~I~--~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~ssnGtV~VNGkkvgK 209 (845)
..-|.|.|++...|.|.|. ...++|||++ ...++|..+|..||+|+ ++.... .+.+-.+|.|++ +|||++++|
T Consensus 14 ~~~c~L~~~~~~~~~I~Lp~~~g~~viGRgp--~t~I~DkrcSR~qv~L~-ad~~~~-~v~vk~lG~NP~-~vng~~l~k 88 (119)
T 1ujx_A 14 RGRLWLQSPTGGPPPIFLPSDGQALVLGRGP--LTQVTDRKCSRNQVELI-ADPESR-TVAVKQLGVNPS-TVGVQELKP 88 (119)
T ss_dssp CCCEEEECCSSSCCCCCCCTTSCCEEESBBT--TTTBCCTTSCTTSEEEE-EETTTT-EEEEEECSSSCC-BSSSSBCCT
T ss_pred cceEEEEeCCCCCCcEEeccCCCCEEEcCCC--CcccccccccceeEEEE-EecCCC-EEEEEEcccCCc-EECCEEecC
Confidence 4569999999999999995 6789999999 44679999999999998 443332 356789999999 999999999
Q ss_pred CceEEeeCCCEEEEccCCCeeEEEEec
Q 003126 210 DSQVVLRGGDELVFSPSGKHSYIFQQL 236 (845)
Q Consensus 210 g~kviL~~GDEIvfs~~g~~aYIFq~l 236 (845)
+..+.|++||.|.+ .+++|.|.++..
T Consensus 89 ~~~~~L~~GD~l~L-l~g~y~~~v~f~ 114 (119)
T 1ujx_A 89 GLSGSLSLGDVLYL-VNGLYPLTLRWS 114 (119)
T ss_dssp TCEEEEETTCCCBC-BTTBSCCEEEEC
T ss_pred CCEEEecCCCEEEE-ecCCeEEEEEec
Confidence 99999999999987 467777777644
No 35
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=98.52 E-value=5.2e-07 Score=89.53 Aligned_cols=83 Identities=24% Similarity=0.438 Sum_probs=67.4
Q ss_pred eeecceeEeeccc---ccceEecCCCCccceeEEEEeecCC-CceEEEEEecCCceEEECCEEcCCCceEEeeCCCEEEE
Q 003126 148 SMTGAVFTVGHNR---QCDLYLKDPSISKNLCRLRRIENGG-PSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (845)
Q Consensus 148 ~I~~~~fTvGr~~---~CDl~L~D~~IS~~hCkI~r~e~gg-~~vA~LEd~ssnGtV~VNGkkvgKg~kviL~~GDEIvf 223 (845)
.|....-+|||.. .|||+|.+..|+..||.|.....++ ..+++|+....+.| ||||+.|.. .+.|+.||.|+|
T Consensus 87 ~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t-~VNG~~I~~--~~~L~~GDrI~l 163 (184)
T 4egx_A 87 YIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADT-YVNGKKVTE--PSILRSGNRIIM 163 (184)
T ss_dssp ECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEECTTCCE-EETTEECCS--CEECCTTCEEEE
T ss_pred EECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeCCCCeE-EEcCEEccc--cEEcCCCCEEEE
Confidence 4555678999954 6999999999999999999765554 46788888766545 999999964 789999999999
Q ss_pred ccCCCeeEEEEe
Q 003126 224 SPSGKHSYIFQQ 235 (845)
Q Consensus 224 s~~g~~aYIFq~ 235 (845)
+. .|.|.|..
T Consensus 164 G~--~h~Frfn~ 173 (184)
T 4egx_A 164 GK--SHVFRFNH 173 (184)
T ss_dssp TT--TEEEEEEC
T ss_pred CC--CCEEEECC
Confidence 75 57788864
No 36
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=2.1e-06 Score=94.94 Aligned_cols=78 Identities=19% Similarity=0.179 Sum_probs=63.4
Q ss_pred CccccccccccccchhhHHHHHHHhhhccccccccc-cccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEE
Q 003126 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (845)
Q Consensus 447 ~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~s-kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLil 525 (845)
+.-+|||++.== -+..|..|..+....|+|+++- +++- +..+.|||.||+|| -.-+||||||++++++++.+
T Consensus 174 ~~p~~t~~digG--l~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGT--GKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 174 EKPTETYSDVGG--LDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGT--GKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp SSCSCCGGGSCS--CHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTS--SHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCChHhcCc--HHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCC--CHHHHHHHHHHHhCCCEEEE
Confidence 566788988743 6899999999999999998864 4432 34588999999995 46799999999999999999
Q ss_pred eccCCC
Q 003126 526 DSLLLP 531 (845)
Q Consensus 526 Ds~~l~ 531 (845)
+.+.|.
T Consensus 247 ~~s~l~ 252 (434)
T 4b4t_M 247 AAPQLV 252 (434)
T ss_dssp EGGGGC
T ss_pred ehhhhh
Confidence 875543
No 37
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=5.8e-06 Score=90.96 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=62.9
Q ss_pred cccccccccccchhhHHHHHHHhhhccccccccc-cccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 449 i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~s-kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
-+|||++.== -|+.|..|..+.-..|+|+++- +++ + +..+.|||.||+|| -.-+||||||++.+++++.++.
T Consensus 143 p~v~~~dIgG--l~~~k~~l~e~v~~Pl~~pe~f~~~g--i-~~prGvLL~GPPGT--GKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 143 PDSTYDMVGG--LTKQIKEIKEVIELPVKHPELFESLG--I-AQPKGVILYGPPGT--GKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp CSCCGGGSCS--CHHHHHHHHHHTHHHHHCHHHHHHHT--C-CCCCCEEEESCSSS--SHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCHHHhCC--HHHHHHHHHHHHHHHHhCHHHHHhCC--C-CCCCceEEeCCCCC--CHHHHHHHHHHhhCCCceEEEh
Confidence 3688888654 4889999999999999998875 443 3 33578999999995 5789999999999999999998
Q ss_pred cCCCC
Q 003126 528 LLLPG 532 (845)
Q Consensus 528 ~~l~G 532 (845)
+.|..
T Consensus 216 s~l~s 220 (405)
T 4b4t_J 216 AELVQ 220 (405)
T ss_dssp GGGSC
T ss_pred HHhhc
Confidence 76654
No 38
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1e-05 Score=89.84 Aligned_cols=79 Identities=19% Similarity=0.137 Sum_probs=64.4
Q ss_pred CccccccccccccchhhHHHHHHHhhhccccccccc-cccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEE
Q 003126 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (845)
Q Consensus 447 ~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~s-kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLil 525 (845)
+.-+|||++.== -|+.|..|..+....|+|+++. +++- +..+-|||.||+|| -.-+||||||++++++++.+
T Consensus 175 ~~p~v~~~DIgG--ld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGT--GKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 175 KSPTESYSDIGG--LESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGT--GKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp SSCCCCGGGTCS--CHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTT--THHHHHHHHHHHHTCEEEEE
T ss_pred cCCCCcceecCc--HHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCc--hHHHHHHHHHHHhCCCEEEE
Confidence 345788988765 3889999999999999998875 4432 34578999999995 57899999999999999999
Q ss_pred eccCCCC
Q 003126 526 DSLLLPG 532 (845)
Q Consensus 526 Ds~~l~G 532 (845)
+.+.|..
T Consensus 248 ~~s~l~s 254 (437)
T 4b4t_I 248 VGSELIQ 254 (437)
T ss_dssp ESGGGCC
T ss_pred EHHHhhh
Confidence 9876654
No 39
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.2e-05 Score=89.12 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=63.4
Q ss_pred ccccccccccccchhhHHHHHHHhhhccccccccc-cccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 448 ~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~s-kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
.-+|||++.-= -++.|..|..+....|+|+++- +|+- +..+.|||.||+|| -.-+||||||++++++++.++
T Consensus 175 ~p~v~~~digG--l~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGt--GKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 175 QGEITFDGIGG--LTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGT--GKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SCSSCSGGGCS--CHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTS--SHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCChhHhCC--hHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCC--cHHHHHHHHHHHhCCCEEEEe
Confidence 34678887643 5889999999999999998764 4442 45588999999995 578999999999999999999
Q ss_pred ccCCCC
Q 003126 527 SLLLPG 532 (845)
Q Consensus 527 s~~l~G 532 (845)
.+.|.+
T Consensus 248 ~s~l~s 253 (437)
T 4b4t_L 248 ASGIVD 253 (437)
T ss_dssp GGGTCC
T ss_pred hhhhcc
Confidence 877765
No 40
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=98.13 E-value=5.2e-06 Score=89.04 Aligned_cols=80 Identities=19% Similarity=0.186 Sum_probs=60.3
Q ss_pred eeeecceeEeeccccc---ceEecCCCCccceeEEEEeec-------CCCceEEEEEecC-CceEEECCEEcCCCceEEe
Q 003126 147 LSMTGAVFTVGHNRQC---DLYLKDPSISKNLCRLRRIEN-------GGPSGALLEITGG-KGEVEVNGNVHPKDSQVVL 215 (845)
Q Consensus 147 i~I~~~~fTvGr~~~C---Dl~L~D~~IS~~hCkI~r~e~-------gg~~vA~LEd~ss-nGtV~VNGkkvgKg~kviL 215 (845)
+.+....|+|||.... ++.+.|++||..|+.|+-... .+....+|+|++| ||| ||||+++. +.+..|
T Consensus 16 ~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGT-fVNGerI~-~~~~~L 93 (325)
T 3huf_A 16 RILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGT-KVNEKVVG-QNGDSY 93 (325)
T ss_dssp EEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCE-EETTEECC-TTCEEE
T ss_pred EEecCCeEEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCE-EECCEECC-Cceeee
Confidence 3455666999997653 369999999999999985321 1234589999855 899 99999995 556666
Q ss_pred e-CCCEEEEccCCC
Q 003126 216 R-GGDELVFSPSGK 228 (845)
Q Consensus 216 ~-~GDEIvfs~~g~ 228 (845)
. .||+|.|+....
T Consensus 94 ~~dgd~I~fG~~~~ 107 (325)
T 3huf_A 94 KEKDLKIQLGKCPF 107 (325)
T ss_dssp CSSEEEEEETTCSS
T ss_pred cCCCCEEEecCCcc
Confidence 5 699999987543
No 41
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=2.3e-05 Score=87.70 Aligned_cols=78 Identities=19% Similarity=0.113 Sum_probs=63.3
Q ss_pred ccccccccccccchhhHHHHHHHhhhccccccccc-cccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 448 ~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~s-kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
.-+|||++.= --|+.|..|..+....|+|+++. +++- ...+.|||.||+|| -.-+||||||++++++++.++
T Consensus 203 ~P~vt~~DIg--Gl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGT--GKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 203 KPDVTYSDVG--GCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGT--GKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp SCSCCCSSCT--TCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTS--SHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCHHHhc--cHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCC--cHHHHHHHHHhccCCCeEEEE
Confidence 3468888863 35888999999999999998765 4432 35688999999995 467999999999999999999
Q ss_pred ccCCCC
Q 003126 527 SLLLPG 532 (845)
Q Consensus 527 s~~l~G 532 (845)
.+.|.+
T Consensus 276 ~s~L~s 281 (467)
T 4b4t_H 276 GSELVQ 281 (467)
T ss_dssp GGGGCC
T ss_pred hHHhhc
Confidence 877765
No 42
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=4.1e-05 Score=84.62 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=63.5
Q ss_pred CccccccccccccchhhHHHHHHHhhhccccccccc-cccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEE
Q 003126 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (845)
Q Consensus 447 ~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~s-kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLil 525 (845)
+.-+|||++.== -+..|..|..+....|+|+++. +++- +..+.|||.||+|| -.-+||||+|++++++++.+
T Consensus 165 ~~p~v~~~digG--l~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGt--GKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 165 EKPDVTYADVGG--LDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGT--GKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp SSCSCCGGGSCS--CHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTT--THHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCHHHhcc--HHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCC--CHHHHHHHHHHHhCCCeEEE
Confidence 345688888543 5889999999999999998765 4442 34578999999995 57899999999999999999
Q ss_pred eccCCCC
Q 003126 526 DSLLLPG 532 (845)
Q Consensus 526 Ds~~l~G 532 (845)
+.+.+.+
T Consensus 238 ~~~~l~~ 244 (428)
T 4b4t_K 238 NGSEFVH 244 (428)
T ss_dssp EGGGTCC
T ss_pred ecchhhc
Confidence 9866654
No 43
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.90 E-value=2.1e-05 Score=93.03 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=58.7
Q ss_pred cccccccccccchhhHHHHHHHhhhccccccccc-cccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 449 i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~s-kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
-+|+|+.-. .-++.|..|..+.-..+++++.. +++ -...+.|||.||+|| -+-+||||||++++++++.++.
T Consensus 472 p~v~w~dig--gl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGt--GKT~lAkaiA~e~~~~f~~v~~ 544 (806)
T 3cf2_A 472 PQVTWEDIG--GLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGC--GKTLLAKAIANECQANFISIKG 544 (806)
T ss_dssp CCCCSTTCC--SCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTS--SHHHHHHHHHHTTTCEEEECCH
T ss_pred CCCCHHHhC--CHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCC--CchHHHHHHHHHhCCceEEecc
Confidence 356776654 35889999999999899988764 443 345678999999995 5689999999999999998876
Q ss_pred cCC
Q 003126 528 LLL 530 (845)
Q Consensus 528 ~~l 530 (845)
..|
T Consensus 545 ~~l 547 (806)
T 3cf2_A 545 PEL 547 (806)
T ss_dssp HHH
T ss_pred chh
Confidence 433
No 44
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.83 E-value=0.00014 Score=76.95 Aligned_cols=76 Identities=26% Similarity=0.270 Sum_probs=57.3
Q ss_pred CCccccccccccccchhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEE
Q 003126 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (845)
Q Consensus 446 g~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLil 525 (845)
.+.-.++|+++- -.+..|..|..+...+++++++.+. .....+.|||.||+|| =..+||||||++++.+++.+
T Consensus 43 ~~~~~~~~~di~--G~~~~~~~l~~~v~~~~~~~~~~~~---~~~~~~~iLL~GppGt--GKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 43 SEKPNVKWEDVA--GLEGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPGT--GKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp ----CCCGGGSC--CGGGHHHHHHHHTHHHHHCGGGGCS---SCCCCCCEEEECSTTS--CHHHHHHHHHHHHTCEEEEE
T ss_pred ccCCCCCHHHhC--CHHHHHHHHHHHHHHHHhCHHHHhc---CCCCCceEEEECCCCC--cHHHHHHHHHHHhCCCEEEe
Confidence 456688999964 3677888999988888888776432 2345577999999994 57899999999999988887
Q ss_pred ecc
Q 003126 526 DSL 528 (845)
Q Consensus 526 Ds~ 528 (845)
+..
T Consensus 116 ~~~ 118 (355)
T 2qp9_X 116 SSS 118 (355)
T ss_dssp EHH
T ss_pred eHH
Confidence 663
No 45
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=97.78 E-value=3.8e-05 Score=78.66 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=50.3
Q ss_pred eeecceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEec-CCceEEECCEEcCCCceEEee-CCCEEEE
Q 003126 148 SMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLR-GGDELVF 223 (845)
Q Consensus 148 ~I~~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~s-snGtV~VNGkkvgKg~kviL~-~GDEIvf 223 (845)
.+....+||||...|||+|.+. .+ -.+.+--.++.--.+||+++ +||+|||||+++... +.|+ .||+|.+
T Consensus 88 ~~~~~~itIG~~~~~dI~l~~~-~~---~~~~~~~~~~~~~~~l~~l~s~ngtvyvNg~~i~~~--~~L~~~GD~I~i 159 (238)
T 1wv3_A 88 PSIQDTMTIGPNAYDDMVIQSL-MN---AIIIKDFQSIQESQYVRIVHDKNTDVYINYELQEQL--TNKAYIGDHIYV 159 (238)
T ss_dssp CSSCSEEEEESSTTSSEECTTC-SS---CEEEECGGGHHHHCEEEEECCTTCCEEETTEECCSS--EEEEETTCEEEE
T ss_pred ecCCceEEEeCCCCCeEEeCCC-ee---EEEEecccCcCCcEEEEEccCCCCCEEECCEEeccc--eeccCCcCEEEE
Confidence 3444489999999999999888 33 23332101100025689998 699999999999654 4799 9999999
No 46
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=97.76 E-value=5.1e-05 Score=71.71 Aligned_cols=81 Identities=21% Similarity=0.224 Sum_probs=64.0
Q ss_pred CceeeecceeEeeccc-ccceEecCCCCccceeEEEEeecCCCceEEEEEecCCceEEECCEEcCCCceEEeeCCCEEEE
Q 003126 145 SHLSMTGAVFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (845)
Q Consensus 145 P~i~I~~~~fTvGr~~-~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~ssnGtV~VNGkkvgKg~kviL~~GDEIvf 223 (845)
-.+++....++||... .|||+|.|..|+..||.|...+.+ .+|. =+.||+ ||||..+.-+. .|..|+-|.+
T Consensus 17 ~~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g----~~L~-~s~ngt-~vdG~~v~~~~--~L~~g~~l~l 88 (123)
T 4a0e_A 17 VEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEG----IRLT-DSAEPL-LQEGLPVPLGT--LLRAGSCLEV 88 (123)
T ss_dssp CEEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTE----EEEE-EESSCC-EETTEECCTTC--BCCTTSCEEE
T ss_pred cEEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCe----EEEE-eccCCE-EECCEEccccc--ccCCCCEEEE
Confidence 3468888999999999 999999999999999999975544 5564 444777 99999988776 8999999888
Q ss_pred ccCCCeeEEEEec
Q 003126 224 SPSGKHSYIFQQL 236 (845)
Q Consensus 224 s~~g~~aYIFq~l 236 (845)
+. -.+.|-+.
T Consensus 89 G~---~~l~~~~~ 98 (123)
T 4a0e_A 89 GF---LLWTFVAV 98 (123)
T ss_dssp TT---EEEEEEET
T ss_pred cc---EEEEEEcC
Confidence 54 34445443
No 47
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.76 E-value=0.00053 Score=71.67 Aligned_cols=76 Identities=24% Similarity=0.247 Sum_probs=57.5
Q ss_pred ccccccccccccchhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhc-cCcEEEEe
Q 003126 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF-SARLLIVD 526 (845)
Q Consensus 448 ~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f-~AkLLilD 526 (845)
.-+++|+++-- -+..|..|..+...+++++++.+ ......+.|||.||+|| -..+||||||+++ +++++.++
T Consensus 6 ~~~~~~~di~G--~~~~k~~l~~~v~~p~~~~~~~~---~~~~~~~~iLL~GppGt--GKT~la~ala~~~~~~~~~~i~ 78 (322)
T 1xwi_A 6 RPNVKWSDVAG--LEGAKEALKEAVILPIKFPHLFT---GKRTPWRGILLFGPPGT--GKSYLAKAVATEANNSTFFSIS 78 (322)
T ss_dssp CCCCCGGGSCS--CHHHHHHHHHHHHHHHHCGGGSC---TTCCCCSEEEEESSSSS--CHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCCHHHhcC--HHHHHHHHHHHHHHHHhCHHHHh---CCCCCCceEEEECCCCc--cHHHHHHHHHHHcCCCcEEEEE
Confidence 44688888643 68899999999888899887743 22334578999999994 5789999999998 67666666
Q ss_pred ccCC
Q 003126 527 SLLL 530 (845)
Q Consensus 527 s~~l 530 (845)
...+
T Consensus 79 ~~~l 82 (322)
T 1xwi_A 79 SSDL 82 (322)
T ss_dssp CCSS
T ss_pred hHHH
Confidence 5433
No 48
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.74 E-value=9.1e-05 Score=87.63 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=59.1
Q ss_pred ccccccccccchhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccC
Q 003126 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (845)
Q Consensus 450 ~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~ 529 (845)
+|+|++.-= -++.|..|.......|+|+++.+... -...+.|||.||+|| -.-+||||||+++++.++.+|..+
T Consensus 200 ~v~~~dIgG--l~~~~~~l~e~v~~pl~~p~~f~~~g--~~~p~GILL~GPPGT--GKT~LAraiA~elg~~~~~v~~~~ 273 (806)
T 3cf2_A 200 EVGYDDIGG--CRKQLAQIKEMVELPLRHPALFKAIG--VKPPRGILLYGPPGT--GKTLIARAVANETGAFFFLINGPE 273 (806)
T ss_dssp SCCGGGCCS--CCTTHHHHHHHHHHHHHCCGGGTSCC--CCCCCEEEEECCTTS--CHHHHHHHHHTTTTCEEEEEEHHH
T ss_pred CCChhhhcC--HHHHHHHHHHHHHHHccCHHHHhhcC--CCCCCeEEEECCCCC--CHHHHHHHHHHHhCCeEEEEEhHH
Confidence 577776554 26778888888888899988753211 234478999999995 678999999999999999999866
Q ss_pred CCC
Q 003126 530 LPG 532 (845)
Q Consensus 530 l~G 532 (845)
+.+
T Consensus 274 l~s 276 (806)
T 3cf2_A 274 IMS 276 (806)
T ss_dssp HHS
T ss_pred hhc
Confidence 654
No 49
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.69 E-value=0.00036 Score=74.07 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=65.4
Q ss_pred HHHHhhhcccCCCccccccccccccchhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHH
Q 003126 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (845)
Q Consensus 435 fk~~~~~~Vvdg~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKAL 514 (845)
+.+.+.+.++++ .-.++|+++-- .+..+..|.......+.++++.. .+....+.|||.||+|| -..+||+|+
T Consensus 97 ~~~~~~~~~~~~-~~~~~~~~iiG--~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~vLL~GppGt--GKT~la~ai 168 (389)
T 3vfd_A 97 LANLIMNEIVDN-GTAVKFDDIAG--QDLAKQALQEIVILPSLRPELFT---GLRAPARGLLLFGPPGN--GKTMLAKAV 168 (389)
T ss_dssp CCTTGGGTTBCC-SCCCCGGGSCS--CHHHHHHHHHHTHHHHHCTTTSC---GGGCCCSEEEEESSTTS--CHHHHHHHH
T ss_pred HHHHHHhhhhcc-CCCCChHHhCC--HHHHHHHHHHHHHHhccCHHHhc---ccCCCCceEEEECCCCC--CHHHHHHHH
Confidence 445555666664 35788988644 67788888888877777766532 23345789999999994 578999999
Q ss_pred HhhccCcEEEEeccCCCC
Q 003126 515 AKHFSARLLIVDSLLLPG 532 (845)
Q Consensus 515 A~~f~AkLLilDs~~l~G 532 (845)
|++++.+++.++...|.+
T Consensus 169 a~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 169 AAESNATFFNISAASLTS 186 (389)
T ss_dssp HHHTTCEEEEECSCCC--
T ss_pred HHhhcCcEEEeeHHHhhc
Confidence 999999988888755544
No 50
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.64 E-value=0.00044 Score=71.61 Aligned_cols=76 Identities=26% Similarity=0.251 Sum_probs=58.9
Q ss_pred CccccccccccccchhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 447 ~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
+.-+++|+++. -.+..|..|..+...+++++++.+. .....+.|||.||+|| -..+||||+|++.+++++.++
T Consensus 11 ~~~~~~~~di~--G~~~~~~~l~~~i~~~~~~~~~~~~---~~~~~~~vLl~GppGt--GKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 11 EKPNVKWEDVA--GLEGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPGT--GKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp ECCCCCGGGSC--SCHHHHHHHHHHTHHHHHCGGGCCT---TCCCCCEEEEECSSSS--CHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCHHHhc--ChHHHHHHHHHHHHHHHhCHHHHhc---CCCCCCeEEEECCCCC--cHHHHHHHHHHHHCCCEEEEc
Confidence 34567888864 4788999999988888888776543 2234578999999995 578999999999999888877
Q ss_pred ccC
Q 003126 527 SLL 529 (845)
Q Consensus 527 s~~ 529 (845)
...
T Consensus 84 ~~~ 86 (322)
T 3eie_A 84 SSD 86 (322)
T ss_dssp HHH
T ss_pred hHH
Confidence 633
No 51
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.61 E-value=0.00049 Score=75.18 Aligned_cols=87 Identities=25% Similarity=0.266 Sum_probs=58.6
Q ss_pred HHHhhhcccCCCccccccccccccchhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHH
Q 003126 436 KDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALA 515 (845)
Q Consensus 436 k~~~~~~Vvdg~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA 515 (845)
.+.+.+.|+ -+.-.++|+++-- .+..|..|..+.-.+++++++..- .....+.|||.||+|| -..+||||||
T Consensus 117 ~~~~~~~i~-~~~~~~~~~di~G--~~~~k~~l~~~v~~p~~~~~~~~~---~~~~~~~vLL~GppGt--GKT~lA~aia 188 (444)
T 2zan_A 117 QNQLQGAIV-IERPNVKWSDVAG--LEGAKEALKEAVILPIKFPHLFTG---KRTPWRGILLFGPPGT--GKSYLAKAVA 188 (444)
T ss_dssp -------CB-CCCCCCCGGGSCS--CHHHHHHHHHHHTHHHHCTTTTSG---GGCCCSEEEEECSTTS--SHHHHHHHHH
T ss_pred HHHhhccee-ccCCCCCHHHhcC--HHHHHHHHHHHHHHHhhCHHHhhc---cCCCCceEEEECCCCC--CHHHHHHHHH
Confidence 333444443 4566889999743 678899999888778888776431 2234578999999994 6789999999
Q ss_pred hhc-cCcEEEEeccCC
Q 003126 516 KHF-SARLLIVDSLLL 530 (845)
Q Consensus 516 ~~f-~AkLLilDs~~l 530 (845)
+++ +++++.++...|
T Consensus 189 ~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 189 TEANNSTFFSISSSDL 204 (444)
T ss_dssp HHCCSSEEEEECCC--
T ss_pred HHcCCCCEEEEeHHHH
Confidence 998 777777666443
No 52
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.46 E-value=0.0018 Score=68.33 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=59.1
Q ss_pred hhhcccCCCccccccccccccchhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhc
Q 003126 439 LQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 518 (845)
Q Consensus 439 ~~~~Vvdg~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f 518 (845)
+.+.+++. .-.++|+++ +-.+..+..|.......++++++.+ .+....+.|||.||+| .=..+||||||+++
T Consensus 70 i~~~i~~~-~~~~~~~~i--~G~~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vLl~GppG--tGKT~la~aia~~~ 141 (357)
T 3d8b_A 70 IMNEIMDH-GPPVNWEDI--AGVEFAKATIKEIVVWPMLRPDIFT---GLRGPPKGILLFGPPG--TGKTLIGKCIASQS 141 (357)
T ss_dssp HHHHTBCC-SCCCCGGGS--CSCHHHHHHHHHHTHHHHHCTTTSC---GGGSCCSEEEEESSTT--SSHHHHHHHHHHHT
T ss_pred HHhhcccC-CCCCCHHHh--CChHHHHHHHHHHHHHHhhChHhHh---hccCCCceEEEECCCC--CCHHHHHHHHHHHc
Confidence 33334432 346888885 4567888888888777777766532 2334567899999999 46789999999999
Q ss_pred cCcEEEEecc
Q 003126 519 SARLLIVDSL 528 (845)
Q Consensus 519 ~AkLLilDs~ 528 (845)
+.+++.++..
T Consensus 142 ~~~~~~i~~~ 151 (357)
T 3d8b_A 142 GATFFSISAS 151 (357)
T ss_dssp TCEEEEEEGG
T ss_pred CCeEEEEehH
Confidence 8887777663
No 53
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.35 E-value=0.0033 Score=61.56 Aligned_cols=73 Identities=25% Similarity=0.238 Sum_probs=48.3
Q ss_pred ccccccccccchhhHHHHHHHhhhccccccc-cccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEecc
Q 003126 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (845)
Q Consensus 450 ~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e-~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~ 528 (845)
+++|+++- -.+..|..|...... +++++ +..++. ...+-|||.||+|| -..+||||||++++.+++.++..
T Consensus 2 ~~~~~~i~--G~~~~~~~l~~~~~~-~~~~~~~~~~g~---~~~~~vll~G~~Gt--GKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 2 GVSFKDVA--GMHEAKLEVREFVDY-LKSPERFLQLGA---KVPKGALLLGPPGC--GKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp CCCTTSSC--SCHHHHHHHHHHHHH-HHCCC------C---CCCCEEEEESCTTS--SHHHHHHHHHHHHTCCEEEEETT
T ss_pred CCCHHHhC--CHHHHHHHHHHHHHH-HHCHHHHHHcCC---CCCceEEEECCCCC--CHHHHHHHHHHHhCCCEEEechH
Confidence 46788763 346677777665443 44332 223322 34567999999994 57889999999999888888775
Q ss_pred CC
Q 003126 529 LL 530 (845)
Q Consensus 529 ~l 530 (845)
.+
T Consensus 74 ~~ 75 (262)
T 2qz4_A 74 EF 75 (262)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 54
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.24 E-value=0.0057 Score=61.53 Aligned_cols=86 Identities=22% Similarity=0.287 Sum_probs=62.0
Q ss_pred HHhhhcccCCCccccccccccccchhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHHh
Q 003126 437 DSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAK 516 (845)
Q Consensus 437 ~~~~~~Vvdg~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~ 516 (845)
+.+.+.+++ +.-.++|+++-- .+..+..|..+...++.++++.. .+....+.|||.||+|| -..+||||||+
T Consensus 5 ~~~~~~~~~-~~~~~~~~~i~G--~~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vll~Gp~Gt--GKT~la~~la~ 76 (297)
T 3b9p_A 5 QLILDEIVE-GGAKVEWTDIAG--QDVAKQALQEMVILPSVRPELFT---GLRAPAKGLLLFGPPGN--GKTLLARAVAT 76 (297)
T ss_dssp HHHHTTTBC-CSSCCCGGGSCC--CHHHHHHHHHHTHHHHHCGGGSC---GGGCCCSEEEEESSSSS--CHHHHHHHHHH
T ss_pred HHHHHHhcc-CCCCCCHHHhCC--hHHHHHHHHHHHHhhhhCHHHHh---cCCCCCCeEEEECcCCC--CHHHHHHHHHH
Confidence 334444444 345789998643 68888888888877777766532 33445789999999994 57899999999
Q ss_pred hccCcEEEEeccCC
Q 003126 517 HFSARLLIVDSLLL 530 (845)
Q Consensus 517 ~f~AkLLilDs~~l 530 (845)
+++.+++.++...+
T Consensus 77 ~~~~~~~~i~~~~l 90 (297)
T 3b9p_A 77 ECSATFLNISAASL 90 (297)
T ss_dssp HTTCEEEEEESTTT
T ss_pred HhCCCeEEeeHHHH
Confidence 99888777766444
No 55
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.10 E-value=0.0051 Score=61.36 Aligned_cols=75 Identities=25% Similarity=0.231 Sum_probs=55.4
Q ss_pred cccccccccccchhhHHHHHHHhhhccccccccc-cccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 449 i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~s-kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
-.++|+++. --+..+..|.......+++++.. +++ + ...+.|||.||+|| -..+||||||++++.+++.++.
T Consensus 12 ~~~~~~~i~--G~~~~~~~l~~~~~~~~~~~~~~~~~~--~-~~~~~~ll~G~~Gt--GKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 12 PNVRYEDIG--GLEKQMQEIREVVELPLKHPELFEKVG--I-EPPKGILLYGPPGT--GKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CCCCGGGSC--SCHHHHHHHHHHTHHHHHCHHHHHHHC--C-CCCSEEEEESSSSS--SHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCCCHHHhc--CHHHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCCeEEEECCCCC--cHHHHHHHHHHHhCCCEEEEeh
Confidence 357888854 46788888888887777776654 332 1 23566999999994 5789999999999888877766
Q ss_pred cCC
Q 003126 528 LLL 530 (845)
Q Consensus 528 ~~l 530 (845)
..+
T Consensus 85 ~~~ 87 (285)
T 3h4m_A 85 SEL 87 (285)
T ss_dssp GGG
T ss_pred HHH
Confidence 444
No 56
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.71 E-value=0.049 Score=60.86 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=50.8
Q ss_pred cccccccccchhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCC
Q 003126 451 VSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (845)
Q Consensus 451 vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l 530 (845)
++|+++-- .+..+..|.......++++++.+... ....+.|||.||+|| -.++||||||++.+.+++.+++..+
T Consensus 201 ~~~~~i~G--~~~~~~~l~~~i~~~l~~~~~~~~~g--~~~~~~vLL~GppGt--GKT~lAraia~~~~~~fv~vn~~~l 274 (489)
T 3hu3_A 201 VGYDDIGG--CRKQLAQIKEMVELPLRHPALFKAIG--VKPPRGILLYGPPGT--GKTLIARAVANETGAFFFLINGPEI 274 (489)
T ss_dssp CCGGGCCS--CHHHHHHHHHHTHHHHHCHHHHHHHT--CCCCCEEEEECSTTS--SHHHHHHHHHHHCSSEEEEEEHHHH
T ss_pred CCHHHcCC--HHHHHHHHHHHHHHHhhCHHHHHhcC--CCCCCcEEEECcCCC--CHHHHHHHHHHHhCCCEEEEEchHh
Confidence 45665432 45556666666666677766542211 234567999999995 5789999999999999998886443
No 57
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=93.95 E-value=0.034 Score=68.19 Aligned_cols=85 Identities=27% Similarity=0.324 Sum_probs=64.5
Q ss_pred CCCCcccccccCCcccCCCCeeeEeecCCCCCccCCCCCCCCCcccceeeeecccCCCCceeeeccCCCCCCCCCCCCCC
Q 003126 584 LPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCE 663 (845)
Q Consensus 584 ~~~~e~s~~t~~~~t~kkGDRVkyvGs~~~~s~~~~~~R~ps~G~rG~V~l~fE~N~ssKVgVrFD~~i~dg~dlg~~ce 663 (845)
+.++..+..-+..+.|+=||||.||..+.. .+.|.||.|+..--.+..--+-|.||.+.-.|+.||+.|.
T Consensus 1051 llkP~~a~~~L~~Q~F~LGDRVv~VqdsG~----------VPl~~kGTVVGi~~~~~~~~ldVvFD~~F~~G~tlggrcs 1120 (1155)
T 3pie_A 1051 ILNAESSYVLLRSQRFHLGDRVMYIQDSGK----------VPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQ 1120 (1155)
T ss_pred eeCHHHhhccccCCcccCCCeEEEecCCCC----------CccccceEEEEEecCCCceEEEEEeccCccCCCccccccc
Confidence 334433444457788999999999986532 4579999998766555555799999999999999999999
Q ss_pred CCCCceeccCc-cccC
Q 003126 664 DDHGFFCTASS-LRLD 678 (845)
Q Consensus 664 ~~~g~fc~a~~-lr~D 678 (845)
...|+-++++. |++.
T Consensus 1121 ~~RG~~v~~s~lLNlT 1136 (1155)
T 3pie_A 1121 TRRGLGLDSSFLLNLS 1136 (1155)
T ss_pred ccccccccHHHeEEcC
Confidence 99998777653 3544
No 58
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.93 E-value=0.058 Score=56.51 Aligned_cols=70 Identities=27% Similarity=0.347 Sum_probs=53.1
Q ss_pred hhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCCCC
Q 003126 461 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (845)
Q Consensus 461 SE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l~G 532 (845)
.+..+..|..+...|.+...............+.|||.||+|| =..+||||||++++.+++.++.+.+..
T Consensus 20 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGt--GKT~la~~ia~~~~~~~~~~~~~~l~~ 89 (363)
T 3hws_A 20 QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGS--GKTLLAETLARLLDVPFTMADATTLTE 89 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTS--SHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCC--CHHHHHHHHHHHcCCCEEEechHHhcc
Confidence 4566777777777776654433333455556788999999995 578899999999999999999976643
No 59
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.90 E-value=0.08 Score=59.00 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=52.7
Q ss_pred hhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCCCC
Q 003126 461 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (845)
Q Consensus 461 SE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l~G 532 (845)
-++.|..|..|.+-|+++..+....+ .....+.|||.||+|+ -..+||||||+.++++++.+|.+.+..
T Consensus 20 qe~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~iLl~GppGt--GKT~lar~lA~~l~~~~~~v~~~~~~~ 88 (444)
T 1g41_A 20 QADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTGV--GKTEIARRLAKLANAPFIKVEATKFTE 88 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCTTTT-TTCCCCCEEEECCTTS--SHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred HHHHHHHHHHHHHHHHhhhccccccc-cccCCceEEEEcCCCC--CHHHHHHHHHHHcCCCceeecchhhcc
Confidence 47889999999988887765543221 1112357999999994 567899999999999999999988754
No 60
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.77 E-value=0.11 Score=51.36 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=52.9
Q ss_pred CCccccccccccccchhhHHHHHHHhhhcccccccc-ccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEE
Q 003126 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF-AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (845)
Q Consensus 446 g~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~-skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLi 524 (845)
.+...++|+++- -.+..|..|..... .+++++. .++.. ...+.|||.||+|| -..+||||||+.++.+++.
T Consensus 4 ~~~~~~~~~~i~--G~~~~~~~l~~~~~-~~~~~~~~~~~~~---~~~~~vll~G~~Gt--GKT~la~~la~~~~~~~~~ 75 (257)
T 1lv7_A 4 EDQIKTTFADVA--GCDEAKEEVAELVE-YLREPSRFQKLGG---KIPKGVLMVGPPGT--GKTLLAKAIAGEAKVPFFT 75 (257)
T ss_dssp ECSSCCCGGGSC--SCHHHHHHTHHHHH-HHHCGGGC--------CCCCEEEEECCTTS--CHHHHHHHHHHHHTCCEEE
T ss_pred ccCCCCCHHHhc--CcHHHHHHHHHHHH-HHhCHHHHHHcCC---CCCCeEEEECcCCC--CHHHHHHHHHHHcCCCEEE
Confidence 345677888864 35667766665443 2444332 22222 23456999999995 5889999999999999999
Q ss_pred EeccCCCC
Q 003126 525 VDSLLLPG 532 (845)
Q Consensus 525 lDs~~l~G 532 (845)
++..++..
T Consensus 76 i~~~~~~~ 83 (257)
T 1lv7_A 76 ISGSDFVE 83 (257)
T ss_dssp ECSCSSTT
T ss_pred EeHHHHHH
Confidence 99877754
No 61
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.52 E-value=0.061 Score=55.23 Aligned_cols=76 Identities=22% Similarity=0.235 Sum_probs=58.0
Q ss_pred cccccccccccchhhHHHHHHHhhhccccccccc-cccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 449 i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~s-kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
-.++|+++- -.+..|..|..+.-..+++++.. +++- ...+.|||.||+|| -..+||||||++++.+++.++.
T Consensus 10 ~~~~~~di~--G~~~~~~~l~~~v~~~~~~~~~~~~~~~---~~~~~vLL~Gp~Gt--GKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 10 PQVTWEDIG--GLEDVKRELQELVQYPVEHPDKFLKFGM---TPSKGVLFYGPPGC--GKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCGGGSC--SCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCSEEEEECSSSS--SHHHHHHHHHHHTTCEEEEECH
T ss_pred CCCCHHHhC--CHHHHHHHHHHHHHHHhhCHHHHHHcCC---CCCceEEEECCCCc--CHHHHHHHHHHHhCCCEEEEEh
Confidence 467888843 36778888888877777776643 3321 34567999999995 5789999999999999999998
Q ss_pred cCCC
Q 003126 528 LLLP 531 (845)
Q Consensus 528 ~~l~ 531 (845)
..+.
T Consensus 83 ~~l~ 86 (301)
T 3cf0_A 83 PELL 86 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7663
No 62
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.13 E-value=0.064 Score=53.11 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=55.9
Q ss_pred cCCCccccccccccccchhhHHHHHHHhhhcccccccc-ccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcE
Q 003126 444 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF-AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (845)
Q Consensus 444 vdg~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~-skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkL 522 (845)
++.+...++|+++-- .+..+..|..... .+++++. .+++.. ..+.|||.||+|| -..+||||||++++.++
T Consensus 1 i~~~~~~~~~~~i~G--~~~~~~~l~~~~~-~~~~~~~~~~~~~~---~~~~vll~G~~Gt--GKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 1 INAEKPNVRFKDMAG--NEEAKEEVVEIVD-FLKYPERYANLGAK---IPKGVLLVGPPGT--GKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CCCCCCCCCSTTSSS--CTTTHHHHHHHHH-HHHCHHHHHHHSCC---CCSCCCCBCSSCS--SHHHHHHHHHHHHTCCC
T ss_pred CCccCCCCCHHHhCC--cHHHHHHHHHHHH-HHHChHHHHHCCCC---CCceEEEECCCCC--cHHHHHHHHHHHhCCCE
Confidence 345667888988643 4666666666543 2554432 233222 2345999999995 57899999999999999
Q ss_pred EEEeccCCCC
Q 003126 523 LIVDSLLLPG 532 (845)
Q Consensus 523 LilDs~~l~G 532 (845)
+.++...+..
T Consensus 73 ~~v~~~~~~~ 82 (268)
T 2r62_A 73 FSMGGSSFIE 82 (268)
T ss_dssp CCCCSCTTTT
T ss_pred EEechHHHHH
Confidence 9998877754
No 63
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.72 E-value=0.19 Score=51.38 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=53.7
Q ss_pred ccccccccccchhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccC
Q 003126 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (845)
Q Consensus 450 ~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~ 529 (845)
+|+|++.- .-++.|..|..+...++++++.-+.. +|..-.+ |||.||+|| =.-+|+||||...+..++.++...
T Consensus 6 ~~~~~di~--g~~~~~~~l~~~i~~~~~~~~~l~~~-~l~~~~G-vlL~Gp~Gt--GKTtLakala~~~~~~~i~i~g~~ 79 (274)
T 2x8a_A 6 NVTWADIG--ALEDIREELTMAILAPVRNPDQFKAL-GLVTPAG-VLLAGPPGC--GKTLLAKAVANESGLNFISVKGPE 79 (274)
T ss_dssp ------CC--HHHHHHHHHHHHHTHHHHSHHHHHHT-TCCCCSE-EEEESSTTS--CHHHHHHHHHHHTTCEEEEEETTT
T ss_pred CCCHHHhC--CHHHHHHHHHHHHHHHhhCHHHHHHc-CCCCCCe-EEEECCCCC--cHHHHHHHHHHHcCCCEEEEEcHH
Confidence 56777754 35889999998887788887654322 2333333 999999994 577899999999999999999877
Q ss_pred CCC
Q 003126 530 LPG 532 (845)
Q Consensus 530 l~G 532 (845)
+..
T Consensus 80 l~~ 82 (274)
T 2x8a_A 80 LLN 82 (274)
T ss_dssp TCS
T ss_pred HHh
Confidence 754
No 64
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.15 E-value=0.19 Score=52.80 Aligned_cols=69 Identities=30% Similarity=0.433 Sum_probs=51.3
Q ss_pred hhhHHHHHHHhhhcccccccccc---------------ccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEE
Q 003126 461 SDITKNVLIASTYVHLKCNNFAK---------------YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (845)
Q Consensus 461 SE~TK~~L~saa~vHLk~~e~sk---------------yt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLil 525 (845)
-+..|..|..+.+-|++...... -........+.|||.||+|| -..+|||+||+.++.++..+
T Consensus 26 q~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~Gt--GKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 26 QEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGS--GKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTS--SHHHHHHHHHHHTTCCEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCC--CHHHHHHHHHHHhCCCEEEe
Confidence 47788888888887776543210 00123445678999999994 57789999999999999999
Q ss_pred eccCCC
Q 003126 526 DSLLLP 531 (845)
Q Consensus 526 Ds~~l~ 531 (845)
|...+.
T Consensus 104 ~~~~~~ 109 (376)
T 1um8_A 104 DATSLT 109 (376)
T ss_dssp EGGGCC
T ss_pred cchhhh
Confidence 987764
No 65
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.22 E-value=0.29 Score=50.26 Aligned_cols=38 Identities=8% Similarity=0.057 Sum_probs=32.8
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCCCC
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l~G 532 (845)
+-|||.||+|| -..+||||||++++++++.++.+.|..
T Consensus 37 ~~lLl~GppGt--GKT~la~aiA~~l~~~~i~v~~~~l~~ 74 (293)
T 3t15_A 37 LILGIWGGKGQ--GKSFQCELVFRKMGINPIMMSAGELES 74 (293)
T ss_dssp SEEEEEECTTS--CHHHHHHHHHHHHTCCCEEEEHHHHHC
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhCCCEEEEeHHHhhh
Confidence 56889999994 577899999999999999999877644
No 66
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.78 E-value=0.18 Score=50.29 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=48.2
Q ss_pred hhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCCCC
Q 003126 461 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (845)
Q Consensus 461 SE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l~G 532 (845)
.+..+..|..+..-|++...+..-.+ -....+.|||.||+|| -..+|||+||++++.+++.+|...+..
T Consensus 20 ~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~vll~G~~Gt--GKT~la~~la~~l~~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 20 QADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTGV--GKTEIARRLAKLANAPFIKVEATKFTE 88 (310)
T ss_dssp CHHHHHHHHHHHHHHHHTTSSCHHHH-HHCCCCCEEEECCTTS--SHHHHHHHHHHHHTCCEEEEEGGGGSS
T ss_pred hHHHHHHHHHHHHHHHhhhhhccccc-ccCCCceEEEECCCCC--CHHHHHHHHHHHhCCCEEEEcchhccc
Confidence 45666677766665555443321111 0123468999999994 577899999999999999999987764
No 67
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.18 E-value=0.65 Score=52.00 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=56.5
Q ss_pred ccCCC-ccccccccccccchhhHHHHHHHhhhcccccccc-ccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccC
Q 003126 443 ILGPE-NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF-AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (845)
Q Consensus 443 Vvdg~-~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~-skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~A 520 (845)
++... ...++|+++-= .+..|.-|..... .+++++. ..+.- ...+-|||.||+|| =..+||||||++.++
T Consensus 4 ~~~~~~~~~~~f~di~G--~~~~~~~l~e~v~-~l~~~~~~~~~g~---~~p~gvLL~GppGt--GKT~Laraia~~~~~ 75 (476)
T 2ce7_A 4 MYKPSGNKRVTFKDVGG--AEEAIEELKEVVE-FLKDPSKFNRIGA---RMPKGILLVGPPGT--GKTLLARAVAGEANV 75 (476)
T ss_dssp -CCCCCSCCCCGGGCCS--CHHHHHHHHHHHH-HHHCTHHHHTTTC---CCCSEEEEECCTTS--SHHHHHHHHHHHHTC
T ss_pred eeccCCCCCCCHHHhCC--cHHHHHHHHHHHH-HhhChHHHhhcCC---CCCCeEEEECCCCC--CHHHHHHHHHHHcCC
Confidence 44455 77899998533 4666666666543 3554332 22222 23345999999995 578999999999999
Q ss_pred cEEEEeccCCCC
Q 003126 521 RLLIVDSLLLPG 532 (845)
Q Consensus 521 kLLilDs~~l~G 532 (845)
+++.++..+|..
T Consensus 76 ~f~~is~~~~~~ 87 (476)
T 2ce7_A 76 PFFHISGSDFVE 87 (476)
T ss_dssp CEEEEEGGGTTT
T ss_pred CeeeCCHHHHHH
Confidence 999999888864
No 68
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=86.95 E-value=0.67 Score=52.15 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=53.7
Q ss_pred cccccccccccchhhHHHHHHHhhhccccccc-cccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 449 i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e-~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
..++|+++-- .+..|..|...... ++++. +..+.-. ..+-|||.||+|| =..+|+||||++.+++++.++.
T Consensus 26 ~~~~f~dv~G--~~~~k~~l~~lv~~-l~~~~~~~~lg~~---ip~GvLL~GppGt--GKTtLaraIa~~~~~~~i~i~g 97 (499)
T 2dhr_A 26 PKVTFKDVAG--AEEAKEELKEIVEF-LKNPSRFHEMGAR---IPKGVLLVGPPGV--GKTHLARAVAGEARVPFITASG 97 (499)
T ss_dssp CCCCTTSSCS--CHHHHHHHHHHHHH-HHCGGGTTTTSCC---CCSEEEEECSSSS--SHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCCHHHcCC--cHHHHHHHHHHHHH-hhchhhhhhccCC---CCceEEEECCCCC--CHHHHHHHHHHHhCCCEEEEeh
Confidence 6889998643 56677777666543 44432 2222222 2344999999995 5789999999999999999998
Q ss_pred cCCCC
Q 003126 528 LLLPG 532 (845)
Q Consensus 528 ~~l~G 532 (845)
.+|..
T Consensus 98 ~~~~~ 102 (499)
T 2dhr_A 98 SDFVE 102 (499)
T ss_dssp GGGTS
T ss_pred hHHHH
Confidence 87754
No 69
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.39 E-value=0.57 Score=46.15 Aligned_cols=77 Identities=22% Similarity=0.271 Sum_probs=50.5
Q ss_pred CCccccccccccccchhhHHHHHHHhhhccccccc-cccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEE
Q 003126 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (845)
Q Consensus 446 g~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e-~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLi 524 (845)
.+.-.++|+++-- .++.+..|...... +.++. +.... +. ..+.|||.||+|| -..+|+||||+..++..+.
T Consensus 8 ~~~~~~~~~~i~g--~~~~~~~l~~l~~~-~~~~~~~~~~~--~~-~~~g~ll~G~~G~--GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 8 TEAPKVTFKDVAG--AEEAKEELKEIVEF-LKNPSRFHEMG--AR-IPKGVLLVGPPGV--GKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp CCCCSCCGGGCCS--CHHHHHHHHHHHHH-HHCHHHHHHTT--CC-CCSEEEEECCTTS--SHHHHHHHHHHHTTCCEEE
T ss_pred cCCCCCCHHHhCC--cHHHHHHHHHHHHH-HHCHHHHHHcC--CC-CCCeEEEECCCCC--CHHHHHHHHHHHhCCCEEE
Confidence 5566889998654 46666666555443 23222 21221 22 2233999999994 5789999999999998888
Q ss_pred EeccCC
Q 003126 525 VDSLLL 530 (845)
Q Consensus 525 lDs~~l 530 (845)
++..++
T Consensus 80 ~~~~~~ 85 (254)
T 1ixz_A 80 ASGSDF 85 (254)
T ss_dssp EEHHHH
T ss_pred eeHHHH
Confidence 876443
No 70
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.36 E-value=0.88 Score=45.69 Aligned_cols=48 Identities=23% Similarity=0.207 Sum_probs=36.0
Q ss_pred cccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhcc-------CcEEEEeccCCCC
Q 003126 483 KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS-------ARLLIVDSLLLPG 532 (845)
Q Consensus 483 kyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~-------AkLLilDs~~l~G 532 (845)
.|+-.-......|||.||+|| -..+||+|||++++ .+++.++...|.+
T Consensus 58 ~~g~~~~~~~~~vll~G~~Gt--GKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~ 112 (309)
T 3syl_A 58 KLGLAHETPTLHMSFTGNPGT--GKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVG 112 (309)
T ss_dssp HHTCCSSCCCCEEEEEECTTS--SHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCC
T ss_pred HcCCCCCCCCceEEEECCCCC--CHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhh
Confidence 333333455667999999994 57789999999984 4888888877755
No 71
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.95 E-value=0.98 Score=49.25 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=35.6
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhcc--CcEEEEeccCCCCCC
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFS--ARLLIVDSLLLPGGS 534 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~--AkLLilDs~~l~G~~ 534 (845)
.+.|||.||+|| -..+||||||++++ ++++.++.+.++...
T Consensus 63 ~~~iLl~GppGt--GKT~la~ala~~l~~~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 63 GRAVLLAGPPGT--GKTALALAIAQELGSKVPFCPMVGSEVYSTE 105 (456)
T ss_dssp TCEEEEECCTTS--SHHHHHHHHHHHHCTTSCEEEEEGGGGCCSS
T ss_pred CCeEEEECCCcC--CHHHHHHHHHHHhCCCceEEEEeHHHHHHHh
Confidence 367999999995 57789999999999 999999999887643
No 72
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=80.11 E-value=0.85 Score=56.32 Aligned_cols=65 Identities=26% Similarity=0.289 Sum_probs=38.2
Q ss_pred CcccCCCCeeeEeecCCCCCccCCCCCCCCCcccceeeeecccC---C---------CCceeeeccCCCCCCCCCCCCCC
Q 003126 596 NYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDN---D---------FSKIGVRFDRSIPEGNNLGGFCE 663 (845)
Q Consensus 596 ~~t~kkGDRVkyvGs~~~~s~~~~~~R~ps~G~rG~V~l~fE~N---~---------ssKVgVrFD~~i~dg~dlg~~ce 663 (845)
++.|+=||||.||..+. .-+.|.||.|+...... + .-.+-|.||++..+|++++|.|+
T Consensus 1056 ~q~F~LgDRVV~V~dsg----------~VP~g~rGTVVGI~~~~~~~~~r~e~~~~~~~~~dVlFD~~F~gG~~i~G~~~ 1125 (1140)
T 2y35_A 1056 KRPVRLFDRVVIVRTIY----------MVPVGTKGTVIGIHPVTDPNPVRLECVHAVDTFCKVLFDSPVPNCNNIHGIAE 1125 (1140)
T ss_dssp SSCCCTTCEEEECSCBT----------TBCTTCEEEECCBEEEECSSCSSTTTTTCEEEEEEEEESSCC-----------
T ss_pred CCcccCcCeEEEEccCC----------CCcccceeEEEEEecCCCCcccccccccccCceeEEEecCCcCCCcccCCccc
Confidence 46788899999998653 24689999998766432 2 22378999999999999999987
Q ss_pred CCCCceec
Q 003126 664 DDHGFFCT 671 (845)
Q Consensus 664 ~~~g~fc~ 671 (845)
..||-..
T Consensus 1126 -~r~yr~p 1132 (1140)
T 2y35_A 1126 -DRVYKVP 1132 (1140)
T ss_dssp --CEEEEE
T ss_pred -cceeecc
Confidence 5665543
No 73
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=79.88 E-value=1.4 Score=51.95 Aligned_cols=78 Identities=21% Similarity=0.126 Sum_probs=56.6
Q ss_pred ccccccccccchhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccC
Q 003126 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (845)
Q Consensus 450 ~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~ 529 (845)
+++|++. +--+..|..|..+....+++++.. .+---...+.|||.||+|| =..+||||||++++.+++.++...
T Consensus 473 ~v~~~di--~gl~~vk~~l~~~v~~~~~~~~~~--~~~~~~~~~~vLL~GppGt--GKT~Lakala~~~~~~~i~v~~~~ 546 (806)
T 1ypw_A 473 QVTWEDI--GGLEDVKRELQELVQYPVEHPDKF--LKFGMTPSKGVLFYGPPGC--GKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCSSCSS--SCCCCHHHHHHTTTTSSSSSCTTT--TCCCCCCCCCCCCBCCTTS--SHHHHHHHHHHHHTCCCCCCCCSS
T ss_pred ccccccc--ccchhhhhhHHHHHHhhhhchHHH--HhcCCCCCceeEEECCCCC--CHHHHHHHHHHHhCCCEEEEechH
Confidence 4556553 456788888888777667665432 1111234567999999995 578899999999999999999888
Q ss_pred CCCC
Q 003126 530 LPGG 533 (845)
Q Consensus 530 l~G~ 533 (845)
+...
T Consensus 547 l~~~ 550 (806)
T 1ypw_A 547 LLTM 550 (806)
T ss_dssp STTC
T ss_pred hhhh
Confidence 7653
No 74
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.85 E-value=1.7 Score=48.21 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=37.9
Q ss_pred ccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCCCC
Q 003126 484 YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (845)
Q Consensus 484 yt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l~G 532 (845)
.+.+-.+..+.|||+||+| .=..+||+|||++++.+++.++.+++.+
T Consensus 69 ~g~~~~~~~~~lLL~GppG--tGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 69 AGKDGSGVFRAAMLYGPPG--IGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp CCTTSTTSCSEEEEECSTT--SSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred cCccCCCCCcEEEEECCCC--CCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 3333334568999999999 5678999999999999999999877654
No 75
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=79.66 E-value=2.3 Score=42.07 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=38.6
Q ss_pred cccccccccchhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhcc---CcEEEEec
Q 003126 451 VSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS---ARLLIVDS 527 (845)
Q Consensus 451 vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~---AkLLilDs 527 (845)
.||++|- --++..+.++-.+..+ .....-|||.||+|| =..+|||||+++.. .+++.+|+
T Consensus 3 ~~f~~~i-g~~~~~~~~~~~~~~~--------------~~~~~~vll~G~~Gt--GKt~la~~i~~~~~~~~~~~~~v~~ 65 (265)
T 2bjv_A 3 EYKDNLL-GEANSFLEVLEQVSHL--------------APLDKPVLIIGERGT--GKELIASRLHYLSSRWQGPFISLNC 65 (265)
T ss_dssp --------CCCHHHHHHHHHHHHH--------------TTSCSCEEEECCTTS--CHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred cccccce-eCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCC--cHHHHHHHHHHhcCccCCCeEEEec
Confidence 5788873 3455555554333221 112367999999995 57899999999885 68999998
Q ss_pred cCC
Q 003126 528 LLL 530 (845)
Q Consensus 528 ~~l 530 (845)
..+
T Consensus 66 ~~~ 68 (265)
T 2bjv_A 66 AAL 68 (265)
T ss_dssp GGS
T ss_pred CCC
Confidence 665
No 76
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=78.21 E-value=5.4 Score=40.80 Aligned_cols=54 Identities=17% Similarity=0.511 Sum_probs=34.6
Q ss_pred HHHHHHhhhcccCCCCEEEEEcchhhhhccC-----------hhHHHHHHHHhccC--CCCEEEEeeccc
Q 003126 690 INELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENL--PSNVVVIGSHTQ 746 (845)
Q Consensus 690 I~sL~EVL~SeS~~~PlILYikDvEK~l~~n-----------~e~y~~fq~~LekL--sg~VvIIGSq~~ 746 (845)
+..+|+.... ..|-||||.+++.+.... .+....|-..|+.+ ..+|+|||.-+.
T Consensus 97 ~~~~f~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~ 163 (301)
T 3cf0_A 97 VREIFDKARQ---AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 163 (301)
T ss_dssp HHHHHHHHHH---TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESC
T ss_pred HHHHHHHHHh---cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCC
Confidence 4455655543 679999999999865421 23334454555544 347999998774
No 77
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=78.03 E-value=1.7 Score=43.72 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=49.2
Q ss_pred ccccccccccccchhhHHHHHHHhhhccccccc-cccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 448 ~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e-~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
...++|+++.- .+..+..|...... +.++. +... ++. ..+-|||.||+|| -..+|+||||+..+...+.++
T Consensus 34 ~~~~~~~~i~g--~~~~~~~l~~l~~~-~~~~~~l~~~--~~~-~~~gvll~Gp~Gt--GKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 34 APKVTFKDVAG--AEEAKEELKEIVEF-LKNPSRFHEM--GAR-IPKGVLLVGPPGV--GKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp CCCCCGGGSSS--CHHHHHHHHHHHHH-HHCHHHHHHT--TCC-CCCEEEEECCTTS--SHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCHHHhCC--hHHHHHHHHHHHHH-HHCHHHHHHc--CCC-CCCeEEEECCCcC--hHHHHHHHHHHHcCCCEEEec
Confidence 36789998754 46666666655442 22221 1111 122 2233999999994 578999999999998888888
Q ss_pred ccCC
Q 003126 527 SLLL 530 (845)
Q Consensus 527 s~~l 530 (845)
..++
T Consensus 106 ~~~~ 109 (278)
T 1iy2_A 106 GSDF 109 (278)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 78
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=76.84 E-value=1.8 Score=40.90 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=47.3
Q ss_pred HHHhhhcccCCCccccccccccccchhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHH
Q 003126 436 KDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALA 515 (845)
Q Consensus 436 k~~~~~~Vvdg~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA 515 (845)
+..++..-++.+--..||++|-+. +.+.+.++-.+ --.+.. +...- -.+.|||.||+|| =..+|++|||
T Consensus 7 ~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~~-~~~~~~-----~~~~~--~~~~~~l~G~~Gt--GKT~la~~i~ 75 (202)
T 2w58_A 7 ESLIQSMFMPREILRASLSDVDLN-DDGRIKAIRFA-ERFVAE-----YEPGK--KMKGLYLHGSFGV--GKTYLLAAIA 75 (202)
T ss_dssp HHHEEEESSCGGGGCCCTTSSCCS-SHHHHHHHHHH-HHHHHH-----CCSSC--CCCEEEEECSTTS--SHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHcCCHhhccCC-ChhHHHHHHHH-HHHHHH-----hhhcc--CCCeEEEECCCCC--CHHHHHHHHH
Confidence 344556666665567799998654 22333333221 111111 10000 1278999999994 5778999999
Q ss_pred hhc---cCcEEEEec
Q 003126 516 KHF---SARLLIVDS 527 (845)
Q Consensus 516 ~~f---~AkLLilDs 527 (845)
+++ +.+.+.++.
T Consensus 76 ~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 76 NELAKRNVSSLIVYV 90 (202)
T ss_dssp HHHHTTTCCEEEEEH
T ss_pred HHHHHcCCeEEEEEh
Confidence 988 556666665
No 79
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=75.93 E-value=11 Score=37.83 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=58.2
Q ss_pred CCEEEEEcchhhhhc------cChhHHHHHHHHhccCCCCEEEEeecccCCCccccCCCCCcceeccCCcccccccccCC
Q 003126 704 SPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFP 777 (845)
Q Consensus 704 ~PlILYikDvEK~l~------~n~e~y~~fq~~LekLsg~VvIIGSq~~~d~~KeK~~~g~~~f~kfg~~~~aLldlafp 777 (845)
.+-||||-|++.++. ...+....|-..|+.-..+++||+.-+..+ .+.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~-----------------------~~~--- 183 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADR-----------------------MEN--- 183 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHH-----------------------HHH---
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHH-----------------------HHH---
Confidence 345999999998653 356777778888888888888888765310 000
Q ss_pred CccccccccCCCchHHHhhhhccCCcceeecCCcchhHHHHHHHHHH
Q 003126 778 DNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLE 824 (845)
Q Consensus 778 d~~~rl~d~~kd~~k~~e~LtkLFPNkI~I~pPqDE~~L~~WK~QLE 824 (845)
+ ...+..|..-|+..|.+.+|.+|.....|+..+.
T Consensus 184 --~----------~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 184 --F----------FQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp --H----------HHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred --H----------HhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 0 0011334445789999999999999999988876
No 80
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=75.44 E-value=1.5 Score=43.60 Aligned_cols=37 Identities=27% Similarity=0.281 Sum_probs=31.6
Q ss_pred CCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEecc
Q 003126 490 TMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (845)
Q Consensus 490 s~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~ 528 (845)
...+.|||.||+|| =..+||+|||++.+.+++.+++.
T Consensus 62 ~~~~~vLl~G~~Gt--GKT~la~~ia~~~~~~~~~i~~~ 98 (272)
T 1d2n_A 62 TPLVSVLLEGPPHS--GKTALAAKIAEESNFPFIKICSP 98 (272)
T ss_dssp CSEEEEEEECSTTS--SHHHHHHHHHHHHTCSEEEEECG
T ss_pred CCCeEEEEECCCCC--cHHHHHHHHHHHhCCCEEEEeCH
Confidence 34568999999994 57899999999999999988864
No 81
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=74.50 E-value=2.2 Score=35.49 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.3
Q ss_pred eEEECCEEcCCCceEEeeCCCEEEEccC
Q 003126 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS 226 (845)
Q Consensus 199 tV~VNGkkvgKg~kviL~~GDEIvfs~~ 226 (845)
.|.|||+.+.+. ..|+.||||.|-.+
T Consensus 48 ~v~vNg~~v~~~--~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 48 QVAVNEEFVQKS--DFIQPNDTVALIPP 73 (77)
T ss_dssp EEEETTEEECTT--SEECTTCEEEEECS
T ss_pred EEEECCEECCCC--CCcCCCCEEEEECC
Confidence 589999999985 69999999998554
No 82
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=74.09 E-value=7.9 Score=38.04 Aligned_cols=54 Identities=19% Similarity=0.481 Sum_probs=32.1
Q ss_pred HHHHHHhhhcccCCCCEEEEEcchhhhhccCh-----------hHHHHHHHHhccC--CCCEEEEeeccc
Q 003126 690 INELFEVALNESKSSPLIVFVKDIEKSLTGNN-----------DAYGALKSKLENL--PSNVVVIGSHTQ 746 (845)
Q Consensus 690 I~sL~EVL~SeS~~~PlILYikDvEK~l~~n~-----------e~y~~fq~~LekL--sg~VvIIGSq~~ 746 (845)
+..+|+-.. ...|-||||.+++.+...+. +....+-..++.+ ..+|+||++-+.
T Consensus 93 ~~~~~~~a~---~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 159 (257)
T 1lv7_A 93 VRDMFEQAK---KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR 159 (257)
T ss_dssp HHHHHHHHH---TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESC
T ss_pred HHHHHHHHH---HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCC
Confidence 344555443 36789999999988654221 2223333334433 457899998774
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=73.47 E-value=2.5 Score=38.53 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=32.3
Q ss_pred CCCCceeeccCCCchHHHHHHHHHHHhhc---cCcEEEEeccCCCC
Q 003126 490 TMCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLLPG 532 (845)
Q Consensus 490 s~s~rILLSGPaGsEiYQE~LaKALA~~f---~AkLLilDs~~l~G 532 (845)
....-|||.||+|| -..+|||||+++. +.+++ +|...+..
T Consensus 22 ~~~~~vll~G~~Gt--GKt~lA~~i~~~~~~~~~~~v-~~~~~~~~ 64 (145)
T 3n70_A 22 ETDIAVWLYGAPGT--GRMTGARYLHQFGRNAQGEFV-YRELTPDN 64 (145)
T ss_dssp TCCSCEEEESSTTS--SHHHHHHHHHHSSTTTTSCCE-EEECCTTT
T ss_pred CCCCCEEEECCCCC--CHHHHHHHHHHhCCccCCCEE-EECCCCCc
Confidence 34466999999996 4789999999987 77888 99876654
No 84
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=71.97 E-value=5 Score=37.85 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=26.6
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhcc---CcEEEEec
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFS---ARLLIVDS 527 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~---AkLLilDs 527 (845)
.+.|||.||+| .-..+||++||+++. .+++.++.
T Consensus 52 ~~~~ll~G~~G--~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 52 VQAIYLWGPVK--SGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp CSEEEEECSTT--SSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 47899999999 456789999998876 45666655
No 85
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=71.62 E-value=5.7 Score=40.35 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=30.4
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccC
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~ 529 (845)
+-+|+.||+| .-..+||+|||++++.+++.++.+.
T Consensus 49 ~~~L~~G~~G--~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 49 HIILHSPSPG--TGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp SEEEECSSTT--SSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred eEEEeeCcCC--CCHHHHHHHHHHHhCCCEEEEcccc
Confidence 4589999999 5688999999999999999999644
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=71.34 E-value=2.1 Score=50.57 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=55.9
Q ss_pred ccccccccccchhhHHHHHHHhhhccccccccccccCCCC-CCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEecc
Q 003126 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLP-TMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (845)
Q Consensus 450 ~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Ls-s~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~ 528 (845)
.|+|++.-- -+..+..|.......|+|+++.+ +|. .....|||.||+|| =..+||||||+.++..++.++..
T Consensus 200 ~v~~~di~G--~~~~~~~l~e~i~~~l~~~~~~~---~l~i~~~~~vLL~Gp~Gt--GKTtLarala~~l~~~~i~v~~~ 272 (806)
T 1ypw_A 200 EVGYDDVGG--CRKQLAQIKEMVELPLRHPALFK---AIGVKPPRGILLYGPPGT--GKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SCCGGGCCS--CSGGGGHHHHHHHHHHHCGGGGT---SSCCCCCCEEEECSCTTS--SHHHHHHHHHHTTTCEEEEEEHH
T ss_pred CCCHHHhCC--hHHHHHHHHHHHHHHhhCHHHHH---hcCCCCCCeEEEECcCCC--CHHHHHHHHHHHcCCcEEEEEch
Confidence 466766432 35556666777766788877642 232 34568999999995 57899999999999999999987
Q ss_pred CCCC
Q 003126 529 LLPG 532 (845)
Q Consensus 529 ~l~G 532 (845)
.+.+
T Consensus 273 ~l~~ 276 (806)
T 1ypw_A 273 EIMS 276 (806)
T ss_dssp HHSS
T ss_pred Hhhh
Confidence 7754
No 87
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=69.79 E-value=2.4 Score=36.32 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.0
Q ss_pred eEEECCEEcCCCceEEeeCCCEEEEccC
Q 003126 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS 226 (845)
Q Consensus 199 tV~VNGkkvgKg~kviL~~GDEIvfs~~ 226 (845)
.|.|||+.+.. ..+|+.||||.|-.|
T Consensus 60 ~v~VN~~~v~~--~~~l~~gDeV~i~Pp 85 (89)
T 3po0_A 60 NVLRNGEAAAL--GEATAAGDELALFPP 85 (89)
T ss_dssp EEEETTEECCT--TSBCCTTCEEEEECC
T ss_pred EEEECCEECCC--CcccCCCCEEEEECC
Confidence 68999999987 457999999998654
No 88
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=68.81 E-value=24 Score=32.52 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=30.4
Q ss_pred CCCCEEEEEcchhhhhccChhHHHHHHHHhccCCCCEEEEeecc
Q 003126 702 KSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 745 (845)
Q Consensus 702 ~~~PlILYikDvEK~l~~n~e~y~~fq~~LekLsg~VvIIGSq~ 745 (845)
...|.||+|.|++.+ ..+....|.+.|+..+.+++||..-+
T Consensus 124 ~~~~~vlviDe~~~l---~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 124 RGRFKVYLIDEVHML---SRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSSSEEEEEETGGGS---CHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred cCCceEEEEECcccc---cHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 457899999999984 34566677788888777776666544
No 89
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=68.64 E-value=2.2 Score=36.39 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.3
Q ss_pred eEEECCEEcCC--CceEEeeCCCEEEEccC
Q 003126 199 EVEVNGNVHPK--DSQVVLRGGDELVFSPS 226 (845)
Q Consensus 199 tV~VNGkkvgK--g~kviL~~GDEIvfs~~ 226 (845)
.|.|||+.+.+ +....|+.||||.|-++
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEEECC
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEEeCC
Confidence 58999999975 56778999999998553
No 90
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=68.10 E-value=3.6 Score=34.39 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=21.6
Q ss_pred eEEECCEEcCCCceEEeeCCCEEEEccC
Q 003126 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS 226 (845)
Q Consensus 199 tV~VNGkkvgKg~kviL~~GDEIvfs~~ 226 (845)
.|.|||+.++. ...|+.||||.|-.+
T Consensus 52 ~v~vN~~~v~~--~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 52 LAAVNQTLVSF--DHPLTDGDEVAFFPP 77 (81)
T ss_dssp EEEETTEECCT--TCBCCTTCEEEEECC
T ss_pred EEEECCEECCC--CCCCCCCCEEEEeCC
Confidence 58999999975 558999999998554
No 91
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=67.83 E-value=3.3 Score=35.89 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=23.8
Q ss_pred CCceEEECCEEcCCCceEEeeCCCEEEEccCCC
Q 003126 196 GKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGK 228 (845)
Q Consensus 196 snGtV~VNGkkvgKg~kviL~~GDEIvfs~~g~ 228 (845)
.+|.|.|||+.+ +. ...|..||+|.+..+..
T Consensus 24 ~~G~V~VNg~~~-~~-~~~v~~gd~I~v~~~~~ 54 (92)
T 2k6p_A 24 NVGAVWLNGSCA-KA-SKEVKAGDTISLHYLKG 54 (92)
T ss_dssp HHTCCEETTEEC-CT-TCBCCTTCEEEECCSSC
T ss_pred HCCcEEECCEEc-CC-CCCcCCCCEEEEEeCCc
Confidence 357799999998 43 45578999999976654
No 92
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=67.29 E-value=3.8 Score=41.77 Aligned_cols=38 Identities=32% Similarity=0.443 Sum_probs=32.7
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCCC
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l~ 531 (845)
.+.|||.||+|| =..+||++||++++.++..++...+.
T Consensus 55 ~~~vll~G~~Gt--GKT~la~~ia~~~~~~~~~~~~~~~~ 92 (338)
T 3pfi_A 55 LDHILFSGPAGL--GKTTLANIISYEMSANIKTTAAPMIE 92 (338)
T ss_dssp CCCEEEECSTTS--SHHHHHHHHHHHTTCCEEEEEGGGCC
T ss_pred CCeEEEECcCCC--CHHHHHHHHHHHhCCCeEEecchhcc
Confidence 346999999994 68899999999999999999986653
No 93
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=67.10 E-value=33 Score=31.30 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=29.7
Q ss_pred CCCCEEEEEcchhhhhccChhHHHHHHHHhccCCCCEEEEeecc
Q 003126 702 KSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 745 (845)
Q Consensus 702 ~~~PlILYikDvEK~l~~n~e~y~~fq~~LekLsg~VvIIGSq~ 745 (845)
...+.||+|.|++.+- .+....|...|+..+.+++||+.-+
T Consensus 100 ~~~~~vliiDe~~~l~---~~~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 100 GAPFKIIFLDEADALT---ADAQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp TCSCEEEEEETGGGSC---HHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred ccCceEEEEeChhhcC---HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4679999999999853 2445567777888777777666544
No 94
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=66.87 E-value=2.9 Score=36.23 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.0
Q ss_pred eEEECCEEcCC--CceEEeeCCCEEEEccC
Q 003126 199 EVEVNGNVHPK--DSQVVLRGGDELVFSPS 226 (845)
Q Consensus 199 tV~VNGkkvgK--g~kviL~~GDEIvfs~~ 226 (845)
.|.|||+.+.. +...+|+.||||.|-.|
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i~Pp 89 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTILPA 89 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEEEC
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEEECC
Confidence 58999999974 56778999999998553
No 95
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=66.77 E-value=28 Score=34.51 Aligned_cols=54 Identities=30% Similarity=0.384 Sum_probs=36.4
Q ss_pred HHHHHHhhhcccCCCCEEEEEcchhhhhc-------cChhHHHHHHHHhccC---CCCEEEEeeccc
Q 003126 690 INELFEVALNESKSSPLIVFVKDIEKSLT-------GNNDAYGALKSKLENL---PSNVVVIGSHTQ 746 (845)
Q Consensus 690 I~sL~EVL~SeS~~~PlILYikDvEK~l~-------~n~e~y~~fq~~LekL---sg~VvIIGSq~~ 746 (845)
+..+++-+. +..+-||||.|++.++. .+.++...|...++.+ ..+|+||+..+.
T Consensus 113 ~~~~~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~ 176 (272)
T 1d2n_A 113 MKKIFDDAY---KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSR 176 (272)
T ss_dssp HHHHHHHHH---TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESC
T ss_pred HHHHHHHHH---hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCC
Confidence 344444333 36789999999999643 2456667777777763 447888888774
No 96
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=66.61 E-value=2.5 Score=34.58 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=23.1
Q ss_pred eEEECCEEcCCC--ceEEeeCCCEEEEcc
Q 003126 199 EVEVNGNVHPKD--SQVVLRGGDELVFSP 225 (845)
Q Consensus 199 tV~VNGkkvgKg--~kviL~~GDEIvfs~ 225 (845)
.|.|||+.+.+. ....|+.||+|.|-+
T Consensus 31 ~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 31 AVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred EEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 589999999987 557899999998854
No 97
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=66.34 E-value=2.9 Score=35.08 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=22.9
Q ss_pred CceEEECCEEcCCCceEEeeCCCEEEEccC
Q 003126 197 KGEVEVNGNVHPKDSQVVLRGGDELVFSPS 226 (845)
Q Consensus 197 nGtV~VNGkkvgKg~kviL~~GDEIvfs~~ 226 (845)
.-.|.|||+.|. +....|+.||||.|-.|
T Consensus 42 ~~~vavN~~~v~-~~~~~l~~gDeV~i~Pp 70 (74)
T 3rpf_C 42 VCAIALNDHLID-NLNTPLKDGDVISLLPP 70 (74)
T ss_dssp TCEEEESSSEEC-CTTCCCCTTCEEEEECC
T ss_pred ccEEEECCEEcC-CCCcCCCCCCEEEEECC
Confidence 346899999965 45678999999998554
No 98
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=66.18 E-value=3.9 Score=34.14 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.5
Q ss_pred eEEECCEEcCCCceEEeeCCCEEEEccC
Q 003126 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS 226 (845)
Q Consensus 199 tV~VNGkkvgKg~kviL~~GDEIvfs~~ 226 (845)
.|.|||+.+.+.. .|+.||+|.|-++
T Consensus 41 ~vavN~~~v~~~~--~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 41 VVKKNGQIVIDEE--EIFDGDIIEVIRV 66 (70)
T ss_dssp EEEETTEECCTTS--BCCTTCEEEEEEC
T ss_pred EEEECCEECCCcc--cCCCCCEEEEEec
Confidence 4899999999987 9999999988543
No 99
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=64.93 E-value=3.3 Score=36.66 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=22.6
Q ss_pred eEEECCEEcC--CCceEEeeCCCEEEEccC
Q 003126 199 EVEVNGNVHP--KDSQVVLRGGDELVFSPS 226 (845)
Q Consensus 199 tV~VNGkkvg--Kg~kviL~~GDEIvfs~~ 226 (845)
.|+|||+.+. .+-..+|+.||||+|-.|
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDeVa~~Pp 95 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDIISFTST 95 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCEEEEEEC
T ss_pred EEEECCEEccccCCCCcCcCCCCEEEEECC
Confidence 4799999875 466789999999999543
No 100
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=63.53 E-value=3.6 Score=41.39 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=31.5
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCC
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l 530 (845)
.+.|||+||+| .-..+||+++|++++.++..++...+
T Consensus 38 ~~~vll~G~~G--tGKT~la~~i~~~~~~~~~~~~~~~~ 74 (324)
T 1hqc_A 38 LEHLLLFGPPG--LGKTTLAHVIAHELGVNLRVTSGPAI 74 (324)
T ss_dssp CCCCEEECCTT--CCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred CCcEEEECCCC--CCHHHHHHHHHHHhCCCEEEEecccc
Confidence 46799999999 45789999999999999988887554
No 101
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=63.10 E-value=4.8 Score=36.98 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=27.9
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
.-|+|+||+|| =.-+++|+||+.++.+.+.+|.
T Consensus 4 ~~i~l~G~~Gs--GKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSA--GKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTS--SHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHhcCCCeEEecc
Confidence 46999999994 5678999999999988777665
No 102
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=63.08 E-value=4.6 Score=40.41 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=30.8
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhc---cCcEEEEeccCCC
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLLP 531 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f---~AkLLilDs~~l~ 531 (845)
..|||.||+|| -..+|||+||+.+ +.+++.+|...+.
T Consensus 48 ~~~ll~G~~Gt--GKt~la~~la~~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 48 GSFLFLGPTGV--GKTELAKTLAATLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp EEEEEESCSSS--SHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred eEEEEECCCCc--CHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence 46999999995 5789999999998 6679999986554
No 103
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=62.62 E-value=2.8 Score=37.25 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.2
Q ss_pred eEEECCEEcCC--CceEEeeCCCEEEEccC
Q 003126 199 EVEVNGNVHPK--DSQVVLRGGDELVFSPS 226 (845)
Q Consensus 199 tV~VNGkkvgK--g~kviL~~GDEIvfs~~ 226 (845)
.|.|||+.+.+ +....|+.||||.|-.+
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDEIGILPP 95 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEEEEEECC
T ss_pred EEEECCEEccccCCCCCCCCCCCEEEEECC
Confidence 58999999965 56778999999998554
No 104
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=62.27 E-value=3.5 Score=36.33 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=21.9
Q ss_pred eEEECCEEcCCCceEEeeCCCEEEEccC
Q 003126 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS 226 (845)
Q Consensus 199 tV~VNGkkvgKg~kviL~~GDEIvfs~~ 226 (845)
.|.|||+.+.. ..+|+.||||.|-.+
T Consensus 69 ~v~VNg~~v~~--~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 69 NIAVNGRYVSW--DEELKDGDVVGVFPP 94 (98)
T ss_dssp EEEETTBCCCT--TCBCCTTCEEEEESC
T ss_pred EEEECCEECCC--CCCCCCCCEEEEECC
Confidence 58999999986 568999999998554
No 105
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=61.81 E-value=19 Score=36.60 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=34.9
Q ss_pred HHHHHHHhhhcccCCCCEEEEEcchhhhhcc--ChhHHHHHHHHhccC--CCCEEEEeeccc
Q 003126 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG--NNDAYGALKSKLENL--PSNVVVIGSHTQ 746 (845)
Q Consensus 689 lI~sL~EVL~SeS~~~PlILYikDvEK~l~~--n~e~y~~fq~~LekL--sg~VvIIGSq~~ 746 (845)
+++.|++.+.. ...|.||+|-|++.+... ..+.+..+-..++.+ ..++.|||.-+.
T Consensus 117 ~~~~l~~~l~~--~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 117 VYERLVKRLSR--LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHHHTT--SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHHHHhc--cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 45566666653 356999999999997654 455555555555555 567777777653
No 106
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=61.77 E-value=7.4 Score=39.71 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=29.1
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
+.|||.||+| .-..+||||||+.++.++..++.
T Consensus 47 ~~vll~G~pG--tGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 47 GHILLEGVPG--LAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp CCEEEESCCC--HHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCC--CcHHHHHHHHHHHhCCCeEEEec
Confidence 5799999999 57889999999999999887775
No 107
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=61.49 E-value=2.5 Score=35.91 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.3
Q ss_pred eEEECCEEcCCCceEEeeCCCEEEEccC
Q 003126 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS 226 (845)
Q Consensus 199 tV~VNGkkvgKg~kviL~~GDEIvfs~~ 226 (845)
.|.|||+.+.+. ..|+.||||.|-.+
T Consensus 48 ~VavNg~~v~~~--~~L~dGD~V~i~pp 73 (77)
T 1rws_A 48 IAKVNGKVVLED--DEVKDGDFVEVIPV 73 (77)
T ss_dssp CEEETTEEECSS--SCCCSSCCCBCSCC
T ss_pred EEEECCEECCCC--CCcCCCCEEEEEcc
Confidence 489999999986 78999999988654
No 108
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=60.73 E-value=1.8 Score=39.51 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=28.5
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccC
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~ 529 (845)
...|||.||+|| -..+|||||+++.. +++.+|...
T Consensus 27 ~~~vll~G~~Gt--GKt~lA~~i~~~~~-~~~~~~~~~ 61 (143)
T 3co5_A 27 TSPVFLTGEAGS--PFETVARYFHKNGT-PWVSPARVE 61 (143)
T ss_dssp SSCEEEEEETTC--CHHHHHGGGCCTTS-CEECCSSTT
T ss_pred CCcEEEECCCCc--cHHHHHHHHHHhCC-CeEEechhh
Confidence 456999999996 46899999999988 777777643
No 109
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=60.61 E-value=5.9 Score=35.46 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.2
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhc
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHF 518 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f 518 (845)
.+.|||.||+| .=..+||+++|+++
T Consensus 43 ~~~~ll~G~~G--~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPG--VGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTT--SCHHHHHHHHHHHH
T ss_pred CCceEEECCCC--CCHHHHHHHHHHHH
Confidence 46799999999 45678999999987
No 110
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=59.67 E-value=26 Score=35.01 Aligned_cols=88 Identities=23% Similarity=0.400 Sum_probs=54.2
Q ss_pred HHHHHHhhhcccCCCCEEEEEcchhhhhcc--------ChhHHHHHHHHhccCCC-----CEEEEeecccCCCccccCCC
Q 003126 690 INELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHP 756 (845)
Q Consensus 690 I~sL~EVL~SeS~~~PlILYikDvEK~l~~--------n~e~y~~fq~~LekLsg-----~VvIIGSq~~~d~~KeK~~~ 756 (845)
+..+|+-.. ...|-|++|.+++.+... +.+....+...|..|+| .+++|+.-+..
T Consensus 121 i~~~~~~~~---~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p--------- 188 (278)
T 1iy2_A 121 VRDLFETAK---RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP--------- 188 (278)
T ss_dssp HHHHHHHHH---TSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCT---------
T ss_pred HHHHHHHHH---hcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCc---------
Confidence 444555443 357889999999875432 23445556666666654 25666655531
Q ss_pred CCcceeccCCcccccccccCCCccccccccCCCchHHHhhhhc--cCCcceeecCCcchhHHHHHHHHH
Q 003126 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQL 823 (845)
Q Consensus 757 g~~~f~kfg~~~~aLldlafpd~~~rl~d~~kd~~k~~e~Ltk--LFPNkI~I~pPqDE~~L~~WK~QL 823 (845)
.++| +.+.. .|...|.|.+|..++....|+..+
T Consensus 189 -------------~~ld---------------------~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 189 -------------DILD---------------------PALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp -------------TSSC---------------------HHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred -------------hhCC---------------------HhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 1122 22332 688899999998888888887654
No 111
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=58.97 E-value=4.5 Score=37.45 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=28.4
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
.+.|+|.||+|+ =.-+++|+||+.++.+++-.|.
T Consensus 5 ~~~i~l~G~~Gs--GKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMGA--GKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTTS--SHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHHHhCCCEEEChH
Confidence 467999999994 4678999999999998776664
No 112
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=58.93 E-value=4.7 Score=37.39 Aligned_cols=33 Identities=36% Similarity=0.521 Sum_probs=27.2
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
+.|+|+||+|| -.-+++|+||+.+|++++=.|.
T Consensus 3 ~~I~l~G~~Gs--GKsT~a~~La~~lg~~~id~D~ 35 (184)
T 2iyv_A 3 PKAVLVGLPGS--GKSTIGRRLAKALGVGLLDTDV 35 (184)
T ss_dssp CSEEEECSTTS--SHHHHHHHHHHHHTCCEEEHHH
T ss_pred CeEEEECCCCC--CHHHHHHHHHHHcCCCEEeCch
Confidence 57999999995 4678999999999998665543
No 113
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=57.49 E-value=8.9 Score=35.17 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=25.7
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhc-----cCcEEEEeccC
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHF-----SARLLIVDSLL 529 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f-----~AkLLilDs~~ 529 (845)
.|||.||+| .-..+|+++||+.+ ....+.++...
T Consensus 40 ~~ll~G~~G--~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 40 HLLFSGPPG--TGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp CEEEECSTT--SSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred eEEEECCCC--CCHHHHHHHHHHHHhccccccceEEecccc
Confidence 499999999 45678888888875 56677776543
No 114
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=57.39 E-value=7.1 Score=36.71 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=25.5
Q ss_pred CCceEEECCEEcCCCceEEeeCCCEEEEccCCCeeEEEE
Q 003126 196 GKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQ 234 (845)
Q Consensus 196 snGtV~VNGkkvgKg~kviL~~GDEIvfs~~g~~aYIFq 234 (845)
.+|.|+|||+.+ |. ...|..||+|.+..+.. .|++.
T Consensus 32 ~~G~V~VNG~~v-k~-s~~V~~GD~I~I~~~~~-~~~~~ 67 (133)
T 1dm9_A 32 EGGKVHYNGQRS-KP-SKIVELNATLTLRQGND-ERTVI 67 (133)
T ss_dssp HTTCEEETTEEC-CT-TCBCCTTCEEEEEETTE-EEEEE
T ss_pred HCCcEEECCEEc-CC-CCEeCCCCEEEEEeCCc-eeeEE
Confidence 467899999998 43 44578999999876543 34433
No 115
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=56.27 E-value=6.1 Score=42.34 Aligned_cols=38 Identities=39% Similarity=0.535 Sum_probs=32.7
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCCC
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l~ 531 (845)
.+.|+|+||+|+ -.-+|+++||+++++.++-+|+..++
T Consensus 5 ~~~i~i~GptGs--GKTtla~~La~~l~~~iis~Ds~qvy 42 (323)
T 3crm_A 5 PPAIFLMGPTAA--GKTDLAMALADALPCELISVDSALIY 42 (323)
T ss_dssp CEEEEEECCTTS--CHHHHHHHHHHHSCEEEEEECTTTTB
T ss_pred CcEEEEECCCCC--CHHHHHHHHHHHcCCcEEeccchhhh
Confidence 357999999994 46789999999999999999987765
No 116
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=55.14 E-value=28 Score=34.01 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=19.3
Q ss_pred cCCcceeecCCcchhHHHHHHHHH
Q 003126 800 LFPNKVTIQLPQDEALLSDWKQQL 823 (845)
Q Consensus 800 LFPNkI~I~pPqDE~~L~~WK~QL 823 (845)
.|...|.|.+|..++....|+..+
T Consensus 176 rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 176 RFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHHH
T ss_pred cCCeEEeeCCcCHHHHHHHHHHHH
Confidence 588889999998888888887554
No 117
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=55.12 E-value=54 Score=33.33 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=32.0
Q ss_pred CCCCEEEEEcchhhhhccChhHHHHHHHHhccCCCCEEEEeecc
Q 003126 702 KSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 745 (845)
Q Consensus 702 ~~~PlILYikDvEK~l~~n~e~y~~fq~~LekLsg~VvIIGSq~ 745 (845)
...+.||+|.|++.+ +.+..+.|.+.|+..++++++|+.-+
T Consensus 117 ~~~~~vliiDe~~~l---~~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 117 RGRFKVYLIDEVHML---SRHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp SSSSEEEEEECGGGS---CHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred cCCeEEEEEECcchh---cHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 356899999999884 34566778888999998888887755
No 118
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=55.08 E-value=5.8 Score=36.77 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=27.8
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
.+.|+|.||+|+ -.-+++|+||+++++..+-+|.
T Consensus 11 ~~~i~i~G~~Gs--GKst~~~~l~~~~~~~~~~~d~ 44 (180)
T 3iij_A 11 LPNILLTGTPGV--GKTTLGKELASKSGLKYINVGD 44 (180)
T ss_dssp CCCEEEECSTTS--SHHHHHHHHHHHHCCEEEEHHH
T ss_pred CCeEEEEeCCCC--CHHHHHHHHHHHhCCeEEEHHH
Confidence 357999999995 5678999999999988765553
No 119
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=55.05 E-value=52 Score=33.19 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=35.0
Q ss_pred HHHHHHHhhhcccCCCCEEEEEcchhhhhccC-hhHHHHHHHHhccC-CCCEEEEeecc
Q 003126 689 AINELFEVALNESKSSPLIVFVKDIEKSLTGN-NDAYGALKSKLENL-PSNVVVIGSHT 745 (845)
Q Consensus 689 lI~sL~EVL~SeS~~~PlILYikDvEK~l~~n-~e~y~~fq~~LekL-sg~VvIIGSq~ 745 (845)
+++.+++.+.. ...|.||+|-|++.+.... .+....|...++.+ ..++.||+.-+
T Consensus 115 ~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 115 LYRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 34556666653 3459999999999976553 66666777777654 34665555543
No 120
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=54.49 E-value=8.1 Score=34.77 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=21.1
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhc
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHF 518 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f 518 (845)
.+-|||.||+| .=..+||+++|+++
T Consensus 43 ~~~vll~G~~G--~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPG--VGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGG--GCHHHHHHHHHHHH
T ss_pred CCceEEECCCC--CCHHHHHHHHHHHH
Confidence 46799999999 45678999999987
No 121
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=54.07 E-value=7.4 Score=44.84 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=31.6
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCCC
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l~ 531 (845)
.|||.||+|| =..+|||+||+.++.+++.+|.+.+.
T Consensus 490 ~~ll~G~~Gt--GKT~la~~la~~l~~~~~~i~~s~~~ 525 (758)
T 1r6b_X 490 SFLFAGPTGV--GKTEVTVQLSKALGIELLRFDMSEYM 525 (758)
T ss_dssp EEEEECSTTS--SHHHHHHHHHHHHTCEEEEEEGGGCS
T ss_pred EEEEECCCCC--cHHHHHHHHHHHhcCCEEEEechhhc
Confidence 5999999994 57889999999999999999986654
No 122
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=54.02 E-value=6 Score=36.60 Aligned_cols=32 Identities=41% Similarity=0.454 Sum_probs=26.2
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
+.|+|.||+|| ---+|+|+||+.++++++=.|
T Consensus 5 ~~i~i~G~~Gs--GKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 5 KNIVFIGFMGS--GKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CCEEEECCTTS--CHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEEcCCCC--CHHHHHHHHHHHcCCCEEccc
Confidence 36999999995 467899999999998765444
No 123
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=52.50 E-value=5.7 Score=39.14 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=16.2
Q ss_pred cCCcceeecCCcchhHHHHHHHHH
Q 003126 800 LFPNKVTIQLPQDEALLSDWKQQL 823 (845)
Q Consensus 800 LFPNkI~I~pPqDE~~L~~WK~QL 823 (845)
-|...|.|.+|..++....|+..+
T Consensus 173 Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 173 RFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCCeEEEecCcCHHHHHHHHHHHH
Confidence 355667777777777777776554
No 124
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=51.87 E-value=7.1 Score=38.74 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=29.1
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhc-----cCcEEEEeccCCCC
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHF-----SARLLIVDSLLLPG 532 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f-----~AkLLilDs~~l~G 532 (845)
.+||+||+| ....++|++||+.+ +..++.++..+..|
T Consensus 40 ~~ll~G~~G--~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 81 (319)
T 2chq_A 40 HLLFSGPPG--TGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (319)
T ss_dssp CEEEESSSS--SSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC
T ss_pred eEEEECcCC--cCHHHHHHHHHHHhcCCcccCCeEEEeCccccC
Confidence 399999999 46778999999886 56678888766544
No 125
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=51.51 E-value=7.9 Score=38.90 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=29.2
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCC
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l 530 (845)
-|+|+||+|| =.-+||++||+++++.++-.|....
T Consensus 3 li~I~G~~GS--GKSTla~~La~~~~~~~i~~D~~~~ 37 (253)
T 2ze6_A 3 LHLIYGPTCS--GKTDMAIQIAQETGWPVVALDRVQC 37 (253)
T ss_dssp EEEEECCTTS--SHHHHHHHHHHHHCCCEEECCSGGG
T ss_pred EEEEECCCCc--CHHHHHHHHHhcCCCeEEeccHHhc
Confidence 4899999995 4678999999999999888887543
No 126
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=50.79 E-value=5.5 Score=36.66 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=22.9
Q ss_pred eEEECCEEcC--CCceEEeeCCCEEEEcc
Q 003126 199 EVEVNGNVHP--KDSQVVLRGGDELVFSP 225 (845)
Q Consensus 199 tV~VNGkkvg--Kg~kviL~~GDEIvfs~ 225 (845)
-|.|||+-+. .|-...|+.||+|+|-+
T Consensus 69 lVLVNg~d~e~l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 69 LVLVNSCDAEVVGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp EEEESSSBHHHHTSSCCCCCSSCEEEEEE
T ss_pred EEEECCeeeeccCCcccCCCCcCEEEEeC
Confidence 3799999886 68889999999999843
No 127
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=50.49 E-value=4.7 Score=37.20 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=22.7
Q ss_pred eEEECCEEcC--CCceEEeeCCCEEEEcc
Q 003126 199 EVEVNGNVHP--KDSQVVLRGGDELVFSP 225 (845)
Q Consensus 199 tV~VNGkkvg--Kg~kviL~~GDEIvfs~ 225 (845)
-|+|||+-+. .|-.-.|+.||||+|-+
T Consensus 75 ~VlVN~~di~~l~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 75 LVLINDADWELLGELDYQLQDQDSILFIS 103 (114)
T ss_dssp EEEESSSBHHHHCTTTCBCCSSEEEEEEE
T ss_pred EEEECCeeeeccCCcCcCCCCCCEEEEeC
Confidence 4799999865 67889999999999844
No 128
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=50.27 E-value=3.3 Score=33.99 Aligned_cols=27 Identities=19% Similarity=0.575 Sum_probs=22.3
Q ss_pred eEEECCEEcCCCc--eEEeeCCCEEEEcc
Q 003126 199 EVEVNGNVHPKDS--QVVLRGGDELVFSP 225 (845)
Q Consensus 199 tV~VNGkkvgKg~--kviL~~GDEIvfs~ 225 (845)
.|.|||+.+.+.. ...|+.||+|.|-+
T Consensus 33 ~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 33 ALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred EEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 4899999999853 46899999998744
No 129
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=49.68 E-value=6.1 Score=35.03 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=22.7
Q ss_pred eEEECCEEcCCCc--eEEeeCCCEEEEcc
Q 003126 199 EVEVNGNVHPKDS--QVVLRGGDELVFSP 225 (845)
Q Consensus 199 tV~VNGkkvgKg~--kviL~~GDEIvfs~ 225 (845)
.|.|||+.|.+.. ...|+.||+|.|-+
T Consensus 54 aVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 54 IVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred EEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 5899999999864 46899999998844
No 130
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=48.67 E-value=9.9 Score=44.03 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=32.4
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhc---cCcEEEEeccCCCC
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLLPG 532 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f---~AkLLilDs~~l~G 532 (845)
.|||.||+|| -...||||||+.+ +.+++.+|.+.+..
T Consensus 523 ~~Ll~Gp~Gt--GKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 523 SFIFLGPTGV--GKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp EEEEESCTTS--SHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred EEEEECCCCC--CHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 5999999994 5789999999998 78899999987765
No 131
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=48.31 E-value=18 Score=33.58 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.4
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhc
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHF 518 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f 518 (845)
.+-|+|.||+|+ =.-+|+++||+.+
T Consensus 38 g~~~~l~G~~G~--GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGV--GKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSS--SHHHHHHHHHHHH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHHHH
Confidence 567999999995 5688999999887
No 132
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=48.29 E-value=12 Score=38.95 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=26.6
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhcc----CcEEEEec
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFS----ARLLIVDS 527 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~----AkLLilDs 527 (845)
.+.|||.||+|| -...||+|||+++. .+.+.+..
T Consensus 152 ~~~lll~G~~Gt--GKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGI--GKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTS--SHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCC--CHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 578999999994 56789999998765 66666655
No 133
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=47.86 E-value=9.4 Score=41.06 Aligned_cols=39 Identities=36% Similarity=0.412 Sum_probs=33.6
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCCCC
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l~G 532 (845)
.+.|+|+||.|+ -.-.|+++||+.|+..++-.|+..+|-
T Consensus 10 ~~~i~i~Gptgs--GKt~la~~La~~~~~~iis~Ds~qvY~ 48 (316)
T 3foz_A 10 PKAIFLMGPTAS--GKTALAIELRKILPVELISVDSALIYK 48 (316)
T ss_dssp CEEEEEECCTTS--CHHHHHHHHHHHSCEEEEECCTTTTBT
T ss_pred CcEEEEECCCcc--CHHHHHHHHHHhCCCcEEecccccccc
Confidence 357899999994 567899999999999999999988863
No 134
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=47.58 E-value=12 Score=38.54 Aligned_cols=38 Identities=16% Similarity=0.423 Sum_probs=31.7
Q ss_pred CEEEEEcchhhhhccChhHHHHHHHHhccCCCCEEEEeecc
Q 003126 705 PLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 745 (845)
Q Consensus 705 PlILYikDvEK~l~~n~e~y~~fq~~LekLsg~VvIIGSq~ 745 (845)
|-||||-+++.+ ..+..+.|-+.++....+++|||+..
T Consensus 190 ~~vl~IDEi~~l---~~~~~~~L~~~le~~~~~~~ii~t~~ 227 (368)
T 3uk6_A 190 PGVLFIDEVHML---DIESFSFLNRALESDMAPVLIMATNR 227 (368)
T ss_dssp BCEEEEESGGGS---BHHHHHHHHHHTTCTTCCEEEEEESC
T ss_pred CceEEEhhcccc---ChHHHHHHHHHhhCcCCCeeeeeccc
Confidence 789999999984 35677778888898888999999874
No 135
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=47.33 E-value=7.9 Score=39.49 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCCceeeccCCCchHHHHHHHHHHHhhc---cCcEEEEeccCC
Q 003126 491 MCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLL 530 (845)
Q Consensus 491 ~s~rILLSGPaGsEiYQE~LaKALA~~f---~AkLLilDs~~l 530 (845)
..+-|||.||+| .-..+|++++|+++ +.+++.++...+
T Consensus 36 ~~~~lll~G~~G--tGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 36 LYNPIFIYGSVG--TGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SCSSEEEECSSS--SSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEECCCC--CcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 346799999999 45788999999999 899999987554
No 136
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=47.01 E-value=11 Score=38.18 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=34.6
Q ss_pred ccccccccccchhhHHHHHHHhhhccccccccccccCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccC
Q 003126 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (845)
Q Consensus 450 ~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~A 520 (845)
..+|++|. -.++.+.+|..+.... ..+-|||.||+|| -..+|||+||+.++-
T Consensus 20 ~~~f~~i~--G~~~~~~~l~~~~~~~---------------~~~~vLl~G~~Gt--GKT~la~~la~~~~~ 71 (350)
T 1g8p_A 20 VFPFSAIV--GQEDMKLALLLTAVDP---------------GIGGVLVFGDRGT--GKSTAVRALAALLPE 71 (350)
T ss_dssp CCCGGGSC--SCHHHHHHHHHHHHCG---------------GGCCEEEECCGGG--CTTHHHHHHHHHSCC
T ss_pred CCCchhcc--ChHHHHHHHHHHhhCC---------------CCceEEEECCCCc--cHHHHHHHHHHhCcc
Confidence 35787753 3455666655544321 1223999999994 567899999998864
No 137
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=46.78 E-value=9 Score=36.54 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=25.6
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
+|+|+||+|| =.-++++.||++|++..+-.|
T Consensus 2 ~I~l~G~~Gs--GKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGA--GKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTS--SHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCC--CHHHHHHHHHHHhCCcEEeHH
Confidence 5999999995 468899999999998765553
No 138
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=46.33 E-value=9 Score=36.45 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=25.6
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
+|+|+||+|| =.-++++.||+++++..+-.|
T Consensus 2 ~I~l~G~~Gs--GKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGA--GKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTS--SHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCC--CHHHHHHHHHHHhCCcEeeHH
Confidence 6999999995 467899999999998765544
No 139
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=45.05 E-value=10 Score=34.42 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=26.1
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
+.|+|.|++|| =--+++|.||+.++++++-.|
T Consensus 3 ~~I~l~G~~Gs--GKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGC--GMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTS--SHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCC--CHHHHHHHHHHHhCCcEEccc
Confidence 47999999995 467899999999998865444
No 140
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=44.62 E-value=19 Score=41.54 Aligned_cols=92 Identities=22% Similarity=0.330 Sum_probs=55.3
Q ss_pred HHHHHHhhhcccCCCCEEEEEcchhhhhc------cChhHHHHHHHHhccCCCCEEEEeecccCCCccccCCCCCcceec
Q 003126 690 INELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTK 763 (845)
Q Consensus 690 I~sL~EVL~SeS~~~PlILYikDvEK~l~------~n~e~y~~fq~~LekLsg~VvIIGSq~~~d~~KeK~~~g~~~f~k 763 (845)
+..+++.+. +..+.||||.|++.++. +..+..+.|+.+|+ .+.+.+||.-+..+-. +
T Consensus 267 l~~~~~~~~---~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~--~---------- 329 (758)
T 1r6b_X 267 FKALLKQLE---QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFS--N---------- 329 (758)
T ss_dssp HHHHHHHHS---SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHH--C----------
T ss_pred HHHHHHHHH---hcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHh--h----------
Confidence 344444443 35789999999998653 34555555655555 3678888887631100 0
Q ss_pred cCCcccccccccCCCccccccccCCCchHHHhhhhccCCcceeecCCcchhHHHHHHHHHHH
Q 003126 764 FGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLER 825 (845)
Q Consensus 764 fg~~~~aLldlafpd~~~rl~d~~kd~~k~~e~LtkLFPNkI~I~pPqDE~~L~~WK~QLEe 825 (845)
.+. .+..|..-|. .|.|.+|..+.....|+..+++
T Consensus 330 -------~~~-------------------~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~ 364 (758)
T 1r6b_X 330 -------IFE-------------------KDRALARRFQ-KIDITEPSIEETVQIINGLKPK 364 (758)
T ss_dssp -------CCC-------------------CTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred -------hhh-------------------cCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHH
Confidence 000 0223444454 6889999888888877765543
No 141
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=43.70 E-value=10 Score=37.03 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=23.5
Q ss_pred eEEECCEEcCC--CceEEeeCCCEEEEccC
Q 003126 199 EVEVNGNVHPK--DSQVVLRGGDELVFSPS 226 (845)
Q Consensus 199 tV~VNGkkvgK--g~kviL~~GDEIvfs~~ 226 (845)
.|.|||+.+.+ +....|+.||||.|-.+
T Consensus 54 ~VaVNg~~v~~~~~~dt~L~dGDeVai~Pp 83 (168)
T 1v8c_A 54 SVFLEGRDVRYLQGLSTPLSPGATLDLFPP 83 (168)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEECS
T ss_pred EEEECCEECCCcCCCccCCCCCCEEEEECc
Confidence 58999999987 44678999999999764
No 142
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=43.16 E-value=88 Score=28.61 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=26.5
Q ss_pred ceeeeccCCCCCCCCCC------CCCCCCCCceeccCccccCC
Q 003126 643 KIGVRFDRSIPEGNNLG------GFCEDDHGFFCTASSLRLDS 679 (845)
Q Consensus 643 KVgVrFD~~i~dg~dlg------~~ce~~~g~fc~a~~lr~D~ 679 (845)
=|||.+|.+. .-||.. =.|.+.||.||....++...
T Consensus 53 wvGVElDep~-GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~ 94 (100)
T 2cow_A 53 WVGVELDLPS-GKNDGSIGGKQYFRCNPGYGLLVRPSRVRRAT 94 (100)
T ss_dssp EEEEECSSSC-CSCSSEETTEECCCSCTTCCEEECGGGCEECC
T ss_pred EEEEEeCCCC-CcCCCEECCEEeeecCCCeEEEecHHHeeECC
Confidence 5899999984 445543 37999999998887665543
No 143
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=42.93 E-value=11 Score=35.79 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=28.2
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
...|+|.||+|+ =.-+|+|+||+.++.+++-.|.
T Consensus 25 ~~~i~l~G~~Gs--GKsTl~~~La~~l~~~~i~~d~ 58 (199)
T 3vaa_A 25 MVRIFLTGYMGA--GKTTLGKAFARKLNVPFIDLDW 58 (199)
T ss_dssp CCEEEEECCTTS--CHHHHHHHHHHHHTCCEEEHHH
T ss_pred CCEEEEEcCCCC--CHHHHHHHHHHHcCCCEEcchH
Confidence 358999999994 5678999999999998766554
No 144
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=42.52 E-value=15 Score=34.64 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=26.4
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
...|+|+||+|+ -.-+|+|.||+.+++.++-.|
T Consensus 18 ~~~I~l~G~~Gs--GKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGS--GKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTS--CHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCC--CHHHHHHHHHHHhCCEEEeCC
Confidence 457999999994 567899999999987654434
No 145
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=42.40 E-value=31 Score=35.17 Aligned_cols=54 Identities=26% Similarity=0.392 Sum_probs=35.3
Q ss_pred eeee-cceeEeecccccceEecCCCCccceeEEEEeecCCCceEEEEEecCCceEEECCEEcCCCceEEeeCCCEE
Q 003126 147 LSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDEL 221 (845)
Q Consensus 147 i~I~-~~~fTvGr~~~CDl~L~D~~IS~~hCkI~r~e~gg~~vA~LEd~ssnGtV~VNGkkvgKg~kviL~~GDEI 221 (845)
+.+. ...||||....|++.|.+... .|. |+--+. |...|||..+.+ +|+.|+.+
T Consensus 15 ~~L~~~~~~tiG~~~~~~itl~~~~~-----~i~-----------l~~~~~-~~~~v~~~~l~~----~l~~g~~~ 69 (238)
T 1wv3_A 15 LNLRDGKTYTISEDERADITLKSLGE-----VIH-----------LEQNNQ-GTWQANHTSINK----VLVRKGDL 69 (238)
T ss_dssp EECCTTCCEEEESCTTSSEECTTCCC-----CEE-----------EEECTT-SCEEETTEECSS----EEEEECSS
T ss_pred EecCCCcEEEECCCccceEEecCCCc-----cEE-----------EEEccC-CeEEECCEEeeh----hccCCcee
Confidence 3444 578999999999999976511 111 222222 566678888886 46777776
No 146
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=41.89 E-value=12 Score=34.04 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=25.6
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
+|+|.|++|| -.-+++|.||++++++.+-.|
T Consensus 2 ~I~l~G~~Gs--GKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCS--GKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTS--CHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCC--CHHHHHHHHHHHhCCCEEECc
Confidence 6999999995 467899999999998866444
No 147
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.87 E-value=14 Score=36.62 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=26.6
Q ss_pred eeeccCCCchHHHHHHHHHHHhhc-----cCcEEEEeccC
Q 003126 495 ILLSGPAGSEIYQETLAKALAKHF-----SARLLIVDSLL 529 (845)
Q Consensus 495 ILLSGPaGsEiYQE~LaKALA~~f-----~AkLLilDs~~ 529 (845)
+||.||+| ....+||+++|+.+ +..++.+|..+
T Consensus 45 ~ll~G~~G--~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 45 MIISGMPG--IGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp EEEECSTT--SSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred EEEECcCC--CCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 99999999 57888999999985 56677777544
No 148
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=41.72 E-value=12 Score=35.46 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=26.1
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
..|+|.||+|| =.-+++|.||++++.+.+-+|
T Consensus 21 ~~I~l~G~~Gs--GKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPGA--GKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTTS--SHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhCCcEEehh
Confidence 47999999994 567899999999998755444
No 149
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=41.48 E-value=11 Score=34.77 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=25.8
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
.-|+|.||+|+ -.-+++++||++++.+.+-.|
T Consensus 6 ~~I~l~G~~Gs--GKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 6 ALIIVTGHPAT--GKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp EEEEEEESTTS--SHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHcCCeEecHH
Confidence 46999999994 567899999999998765444
No 150
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=40.65 E-value=34 Score=34.58 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=29.8
Q ss_pred CCEEEEEcchhhhhccChhHHHHHHHHhccCCCCEEEEeecc
Q 003126 704 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 745 (845)
Q Consensus 704 ~PlILYikDvEK~l~~n~e~y~~fq~~LekLsg~VvIIGSq~ 745 (845)
.+-||+|.|++.+- + .+..+.|...|+..++++.||+.-+
T Consensus 105 ~~~vliiDEi~~l~-~-~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 105 RQKVIVIDEFDRSG-L-AESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp CEEEEEEESCCCGG-G-HHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCeEEEEECCcccC-c-HHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 67899999999853 1 3455667778888888888887655
No 151
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=40.57 E-value=16 Score=32.90 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=25.4
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
.|+|+||+|+ =.-+|+|+||+.++...+-.|
T Consensus 3 ~i~l~G~~Gs--GKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCC--FKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSS--SHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCC--CHHHHHHHHHHHhCCeeecCc
Confidence 5899999994 567899999999998765444
No 152
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=39.82 E-value=22 Score=31.72 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=32.9
Q ss_pred HHHHHHHhhhcccCCCCEEEEEcchhhhhcc-----ChhHHHHHHHHhccCCCCEEEEeecc
Q 003126 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLENLPSNVVVIGSHT 745 (845)
Q Consensus 689 lI~sL~EVL~SeS~~~PlILYikDvEK~l~~-----n~e~y~~fq~~LekLsg~VvIIGSq~ 745 (845)
.++.+++-+.. ...|.||+|.|++.+... ..+++..|...++. +++.+|+.-+
T Consensus 102 ~~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 102 RLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp HHHHHHHHHHH--STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred HHHHHHHHHhh--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 34444443332 467999999999996532 35667778777765 4455555443
No 153
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=39.24 E-value=15 Score=39.82 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=32.0
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCCC
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l~ 531 (845)
-|+|.||.|+ -.-.|+++||+.|+..++-.|+-.+|
T Consensus 42 lIvI~GPTgs--GKTtLa~~LA~~l~~eiIs~Ds~qvY 77 (339)
T 3a8t_A 42 LLVLMGATGT--GKSRLSIDLAAHFPLEVINSDKMQVY 77 (339)
T ss_dssp EEEEECSTTS--SHHHHHHHHHTTSCEEEEECCSSTTB
T ss_pred eEEEECCCCC--CHHHHHHHHHHHCCCcEEcccccccc
Confidence 6999999994 56789999999999999999998776
No 154
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=39.23 E-value=7.2 Score=33.09 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=20.4
Q ss_pred CCceEEECCEEcCCCceEEeeCCCEEEE
Q 003126 196 GKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (845)
Q Consensus 196 snGtV~VNGkkvgKg~kviL~~GDEIvf 223 (845)
..|.|+|||+.+.+.. ..+..||+|.+
T Consensus 44 ~~G~V~VNG~~v~~~~-~~v~~gd~I~v 70 (79)
T 1p9k_A 44 AEGQVKVDGAVETRKR-CKIVAGQTVSF 70 (79)
T ss_dssp HHHHHEETTBCCCCSS-CCCCSSEEEEE
T ss_pred HCCEEEECCEEecCCC-CCCCCCCEEEE
Confidence 4688999999986553 33568998877
No 155
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=39.22 E-value=14 Score=33.68 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=26.4
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
+-|+|.|++|| ---+++|.||+++|.+++-.|
T Consensus 8 ~~i~l~G~~Gs--GKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGS--GKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTS--SHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCC--CHHHHHHHHHHHhCCCEEECh
Confidence 56999999995 467899999999999876444
No 156
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=39.14 E-value=17 Score=42.87 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=31.7
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhc---cCcEEEEeccCCC
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLLP 531 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f---~AkLLilDs~~l~ 531 (845)
..|||.||+|| -..+||||||+.+ +.+++.+|.+.+.
T Consensus 589 ~~vLl~Gp~Gt--GKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 589 GSFLFLGPTGV--GKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp EEEEEBSCSSS--SHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 36899999995 5688999999999 8899999986654
No 157
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=38.83 E-value=68 Score=35.90 Aligned_cols=54 Identities=19% Similarity=0.447 Sum_probs=31.8
Q ss_pred HHHHHHhhhcccCCCCEEEEEcchhhhhccC--------h---hHHHHHHHHhccC--CCCEEEEeeccc
Q 003126 690 INELFEVALNESKSSPLIVFVKDIEKSLTGN--------N---DAYGALKSKLENL--PSNVVVIGSHTQ 746 (845)
Q Consensus 690 I~sL~EVL~SeS~~~PlILYikDvEK~l~~n--------~---e~y~~fq~~LekL--sg~VvIIGSq~~ 746 (845)
+..+|+-+.. ..|-||||-+++.+...+ . +..+.|-..++.+ ..+|+||++-+.
T Consensus 97 ~r~lf~~A~~---~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~ 163 (476)
T 2ce7_A 97 VRDLFAQAKA---HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNR 163 (476)
T ss_dssp HHHHHHHHHH---TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESC
T ss_pred HHHHHHHHHh---cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCC
Confidence 3445555443 679999999999854321 1 2233333333433 357899988774
No 158
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=38.58 E-value=24 Score=35.65 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=26.9
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhcc------CcEEEEeccCC
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHFS------ARLLIVDSLLL 530 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f~------AkLLilDs~~l 530 (845)
.+||.||+| .-..+||++||++++ ..++-++..+.
T Consensus 60 ~~ll~G~~G--~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 100 (353)
T 1sxj_D 60 HMLFYGPPG--TGKTSTILALTKELYGPDLMKSRILELNASDE 100 (353)
T ss_dssp CEEEECSTT--SSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred EEEEECCCC--CCHHHHHHHHHHHhCCCcccccceEEEccccc
Confidence 399999999 567889999999864 45666766544
No 159
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=38.55 E-value=22 Score=39.21 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=29.4
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
+.|||.||+|| -..+||++||+.++.++..+..
T Consensus 51 ~~vLL~GppGt--GKTtlAr~ia~~~~~~f~~l~a 83 (447)
T 3pvs_A 51 HSMILWGPPGT--GKTTLAEVIARYANADVERISA 83 (447)
T ss_dssp CEEEEECSTTS--SHHHHHHHHHHHTTCEEEEEET
T ss_pred cEEEEECCCCC--cHHHHHHHHHHHhCCCeEEEEe
Confidence 57999999995 5789999999999999988875
No 160
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=38.20 E-value=14 Score=40.68 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=27.1
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhc----------cCcEEEEecc
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHF----------SARLLIVDSL 528 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f----------~AkLLilDs~ 528 (845)
+.+||.||+| .-..+||++||+.+ +.+++.+|..
T Consensus 202 ~~~LL~G~pG--~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 202 NNPVLIGEPG--VGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp CEEEEESCTT--TTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred CCeEEECCCC--CCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 4689999999 56788999999997 8888888875
No 161
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=38.17 E-value=18 Score=34.90 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=22.0
Q ss_pred CCceEEECCEEcCCCceEEeeCCCEEEEcc
Q 003126 196 GKGEVEVNGNVHPKDSQVVLRGGDELVFSP 225 (845)
Q Consensus 196 snGtV~VNGkkvgKg~kviL~~GDEIvfs~ 225 (845)
..|.|.|||+.+.+. ...+..||+|.+.-
T Consensus 74 ~~G~V~VNG~~v~~p-s~~V~~gD~I~V~~ 102 (159)
T 1c05_A 74 THGHILVDGSRVNIP-SYRVKPGQTIAVRE 102 (159)
T ss_dssp HTTCEEETTEECCCS-SCBCCTTCEEEECG
T ss_pred HCCCEEECCEEeCcC-CcEeCCCCEEEEeC
Confidence 357899999999765 34467899998843
No 162
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=37.77 E-value=24 Score=35.76 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=31.3
Q ss_pred CCCCceeeccCCCchHHHHHHHHHHHhhc---------cCcEEEEeccCC
Q 003126 490 TMCPRILLSGPAGSEIYQETLAKALAKHF---------SARLLIVDSLLL 530 (845)
Q Consensus 490 s~s~rILLSGPaGsEiYQE~LaKALA~~f---------~AkLLilDs~~l 530 (845)
...+.|||+||+| .-..+|++++|+.+ +.+.+.++....
T Consensus 42 ~~~~~vll~G~~G--~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 42 EKPSNALLYGLTG--TGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CCCCCEEECBCTT--SSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCcEEEECCCC--CCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 3457899999999 45788999999988 788888886543
No 163
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=37.72 E-value=14 Score=35.50 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=25.3
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
+|+|.||+|| =.-++++.||++++.+.+-.|
T Consensus 2 ~I~l~G~~Gs--GKsT~a~~L~~~~g~~~i~~d 32 (214)
T 1e4v_A 2 RIILLGAPVA--GKGTQAQFIMEKYGIPQISTG 32 (214)
T ss_dssp EEEEEESTTS--SHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCC--CHHHHHHHHHHHhCCeEEeHH
Confidence 6999999995 457899999999987765543
No 164
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=37.70 E-value=14 Score=34.19 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=25.3
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
..|+|.||+|| =.-+++|.||++++...+-.|
T Consensus 13 ~~I~l~G~~Gs--GKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 13 KIIFIIGGPGS--GKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp CEEEEEECTTS--SHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCC--CHHHHHHHHHHHhCCeEEcHH
Confidence 57999999995 467899999999996644333
No 165
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=36.82 E-value=16 Score=33.79 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=26.4
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
...|.|.||+|| -.-+++|.||++++.+.+-.|
T Consensus 9 ~~~I~l~G~~Gs--GKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGS--GKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTS--SHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHHHhCCeEEcHH
Confidence 357999999995 567899999999998754443
No 166
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=36.77 E-value=23 Score=36.61 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=31.8
Q ss_pred CCCCceeeccCCCchHHHHHHHHHHHhhc---cCcEEEEeccCC
Q 003126 490 TMCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLL 530 (845)
Q Consensus 490 s~s~rILLSGPaGsEiYQE~LaKALA~~f---~AkLLilDs~~l 530 (845)
.....|||.||+|| =.++||+||+++. +.+++.+++..+
T Consensus 23 ~~~~~vLi~Ge~Gt--GKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGT--GKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTS--CHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCc--hHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 34567999999995 5789999999965 678889998765
No 167
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=36.43 E-value=18 Score=35.25 Aligned_cols=33 Identities=36% Similarity=0.427 Sum_probs=26.6
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
...|+|.||+|| =.-+++++||++|+++.+-.|
T Consensus 16 ~~~I~l~G~~Gs--GKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 16 GVRAVLLGPPGA--GKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp CCEEEEECCTTS--SHHHHHHHHHHHHTCEEEEHH
T ss_pred CeEEEEECCCCC--CHHHHHHHHHHHhCCceecHH
Confidence 357999999995 467899999999997755443
No 168
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=36.29 E-value=20 Score=30.88 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=23.9
Q ss_pred ceEEECCEEcCCCce--EEeeCCCEEEEcc
Q 003126 198 GEVEVNGNVHPKDSQ--VVLRGGDELVFSP 225 (845)
Q Consensus 198 GtV~VNGkkvgKg~k--viL~~GDEIvfs~ 225 (845)
=.|.|||+.|.|... ..|+.||.|-+-+
T Consensus 35 vAVavNg~iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 35 VTVELNGEVLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CCEEETTEECCTTHHHHCEECSSBCEEECC
T ss_pred EEEEECCEECChHHcCcccCCCCCEEEEEe
Confidence 368999999999854 8999999998754
No 169
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=35.86 E-value=21 Score=36.54 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=30.4
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhc-----------cCcEEEEeccCC
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHF-----------SARLLIVDSLLL 530 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f-----------~AkLLilDs~~l 530 (845)
.+-|||+||+| .=..+||+++|+++ +.+.+.++...+
T Consensus 45 ~~~vll~G~~G--~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 45 KFSNLFLGLTG--TGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp CCEEEEEECTT--SSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred CCcEEEECCCC--CCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence 46899999999 46778999999987 888888886543
No 170
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=35.63 E-value=18 Score=34.75 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=26.1
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
..|+|.||+|| -.-+++|.||++++.+.+-.|
T Consensus 5 ~~I~l~G~~Gs--GKsT~a~~La~~l~~~~i~~d 36 (220)
T 1aky_A 5 IRMVLIGPPGA--GKGTQAPNLQERFHAAHLATG 36 (220)
T ss_dssp CEEEEECCTTS--SHHHHHHHHHHHHCCEEEEHH
T ss_pred cEEEEECCCCC--CHHHHHHHHHHHcCceEEehh
Confidence 57999999995 467899999999998655443
No 171
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=35.62 E-value=37 Score=34.64 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=26.3
Q ss_pred CCCCEEEEEcchhhhhccCh----------hHHHHHHHHhccC-------------CCCEEEEeeccc
Q 003126 702 KSSPLIVFVKDIEKSLTGNN----------DAYGALKSKLENL-------------PSNVVVIGSHTQ 746 (845)
Q Consensus 702 ~~~PlILYikDvEK~l~~n~----------e~y~~fq~~LekL-------------sg~VvIIGSq~~ 746 (845)
+..|-||||-|+++...... +....|-..|+.+ ..+|+||+.-+.
T Consensus 97 ~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~ 164 (293)
T 3t15_A 97 KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGND 164 (293)
T ss_dssp TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSS
T ss_pred cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCC
Confidence 57899999999999665222 3445566666522 246777777764
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=35.17 E-value=94 Score=31.73 Aligned_cols=38 Identities=13% Similarity=0.242 Sum_probs=29.9
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccC--cEEEEeccCCC
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSA--RLLIVDSLLLP 531 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~A--kLLilDs~~l~ 531 (845)
.+.|||.||+| .-..+||+|+|++++. +...+....++
T Consensus 70 ~~~vLl~GppG--tGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 70 GRAVLIAGQPG--TGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp TCEEEEEESTT--SSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CCEEEEECCCC--CCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 57899999999 5688999999999985 56666554443
No 173
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=35.11 E-value=16 Score=39.46 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=31.9
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCCC
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l~ 531 (845)
+-|+++||+|+ -.-.|+++||+.|+..++-.|+..+|
T Consensus 4 ~~i~i~Gptgs--GKt~la~~La~~~~~~iis~Ds~QvY 40 (322)
T 3exa_A 4 KLVAIVGPTAV--GKTKTSVMLAKRLNGEVISGDSMQVY 40 (322)
T ss_dssp EEEEEECCTTS--CHHHHHHHHHHTTTEEEEECCGGGGB
T ss_pred cEEEEECCCcC--CHHHHHHHHHHhCccceeecCcccce
Confidence 35889999994 56789999999999999999998776
No 174
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=34.81 E-value=16 Score=39.80 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=31.4
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhc-----cCcEEEEeccCC
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHF-----SARLLIVDSLLL 530 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f-----~AkLLilDs~~l 530 (845)
.+-+||.||+| .-..+|++|+|+++ +.+++.++...|
T Consensus 130 ~~~lll~Gp~G--~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVG--LGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSS--SSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 56799999999 56788999999998 888898887654
No 175
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.45 E-value=54 Score=38.68 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=27.2
Q ss_pred HHHHHHhhhcccCCCCEEEEEcchhhhhc-----cChhHHHHHHHHhccCCCCEEEEeeccc
Q 003126 690 INELFEVALNESKSSPLIVFVKDIEKSLT-----GNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (845)
Q Consensus 690 I~sL~EVL~SeS~~~PlILYikDvEK~l~-----~n~e~y~~fq~~LekLsg~VvIIGSq~~ 746 (845)
+..+++-+.. ..+|.||||-|++.+.. +..+..+.|+..|+. +.+.+||.-+.
T Consensus 251 l~~~~~~~~~--~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~ 308 (854)
T 1qvr_A 251 LKAVIQEVVQ--SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTL 308 (854)
T ss_dssp HHHHHHHHHT--TCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECH
T ss_pred HHHHHHHHHh--cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCc
Confidence 3444444432 24799999999998653 336777788888875 67778887763
No 176
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=34.43 E-value=18 Score=35.03 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=26.3
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
..|+|.||+|| -.-+++|.||++++...+-+|
T Consensus 8 ~~I~l~G~~Gs--GKsT~a~~La~~l~~~~i~~d 39 (227)
T 1zd8_A 8 LRAVIMGAPGS--GKGTVSSRITTHFELKHLSSG 39 (227)
T ss_dssp CEEEEEECTTS--SHHHHHHHHHHHSSSEEEEHH
T ss_pred cEEEEECCCCC--CHHHHHHHHHHHcCCeEEech
Confidence 57999999995 467899999999998765443
No 177
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=34.41 E-value=20 Score=38.71 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=31.7
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCCC
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l~ 531 (845)
+-|+|+||+||- .-+|+++||+.|++.++-.|+..+|
T Consensus 8 ~lI~I~GptgSG--KTtla~~La~~l~~~iis~Ds~qvY 44 (340)
T 3d3q_A 8 FLIVIVGPTASG--KTELSIEVAKKFNGEIISGDSMQVY 44 (340)
T ss_dssp EEEEEECSTTSS--HHHHHHHHHHHTTEEEEECCSSTTB
T ss_pred ceEEEECCCcCc--HHHHHHHHHHHcCCceecccccccc
Confidence 469999999954 7789999999999988888987565
No 178
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=34.25 E-value=20 Score=35.58 Aligned_cols=32 Identities=31% Similarity=0.550 Sum_probs=24.9
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhcc-----CcEEEEec
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHFS-----ARLLIVDS 527 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f~-----AkLLilDs 527 (845)
.+||.||+| .-..+||++||+.+. ..++.++.
T Consensus 48 ~~ll~G~~G--~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 48 HLLFAGPPG--VGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp EEEEESCTT--SSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred eEEEECcCC--CCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 499999999 567889999999863 34666664
No 179
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1
Probab=34.15 E-value=40 Score=33.67 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhhhcccCCCCEEEEEcchhhhhccChhHHHHHHHHhccC-CCCEEEEeec
Q 003126 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENL-PSNVVVIGSH 744 (845)
Q Consensus 686 eKllI~sL~EVL~SeS~~~PlILYikDvEK~l~~n~e~y~~fq~~LekL-sg~VvIIGSq 744 (845)
..-+++.||+ +..-....|+||.+.|.+++-. --++=...+++++++ ||+..+|--.
T Consensus 45 n~~Av~rl~~-~K~R~~~kPl~v~v~~~~~~~~-~~~~~~~~~~ll~~~wPgp~T~il~~ 102 (208)
T 1jcu_A 45 DEDAVRRLFR-VKGRSPHKPVSICVSCVDEIPR-FSRPSGDAMELMERILPGPYTVVLER 102 (208)
T ss_dssp SHHHHHHHHH-HCCSCTTSCCEEECSCTTTSTT-TEECCHHHHHHHHHSCSSSEEEEEEE
T ss_pred CHHHHHHHHH-HhCCCCCCCEEEEeCCHHHHHH-HhcCCHHHHHHHHhcCCCCeEEEEeC
Confidence 5678999998 5555567899999999876322 111112233455554 8998888644
No 180
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=34.10 E-value=41 Score=32.96 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhhhcccCCCCEEEEEcchhhhhc--c---ChhHHHHHHHHhccCCCCEEEEeec
Q 003126 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT--G---NNDAYGALKSKLENLPSNVVVIGSH 744 (845)
Q Consensus 686 eKllI~sL~EVL~SeS~~~PlILYikDvEK~l~--~---n~e~y~~fq~~LekLsg~VvIIGSq 744 (845)
..-+++.||+ +-.-....|+||.+.|.++.-. . -.+.. .+.++...||++.+|--.
T Consensus 39 ~~~av~rl~~-~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~pgP~tlil~~ 99 (188)
T 1hru_A 39 SETAVMRLLE-LKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQ--RETIFSRWPGPVTFVFPA 99 (188)
T ss_dssp CHHHHHHHHH-HHTCCGGGCCEEEESSHHHHGGGCCCTTCCHHH--HHHHHTTCSSSEEEEEEC
T ss_pred CHHHHHHHHH-HcCCCCCCCEEEEeCCHHHHHHHHhhcCCCHHH--HHHHHhCCCCCEEEEEEC
Confidence 5678999998 5445557899999999775322 1 12211 233456669999987643
No 181
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.74 E-value=87 Score=30.96 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=27.7
Q ss_pred CCCEEEEEcchhhhhccChhHHHHHHHHhccCCCCEEEEeecc
Q 003126 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 745 (845)
Q Consensus 703 ~~PlILYikDvEK~l~~n~e~y~~fq~~LekLsg~VvIIGSq~ 745 (845)
..+.||+|.|++.+- .+..+.|.+.|+..++++++|..-+
T Consensus 106 ~~~~viiiDe~~~l~---~~~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 106 GKHKIVILDEADSMT---AGAQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp TCCEEEEEESGGGSC---HHHHHTTHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECcccCC---HHHHHHHHHHHhccCCCceEEEEeC
Confidence 348999999999842 2344556677888877776666443
No 182
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=33.67 E-value=18 Score=33.15 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=21.7
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhcc
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFS 519 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~ 519 (845)
..|+|.||+|+ -.-+++|+||++++
T Consensus 4 ~~I~i~G~~Gs--GKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGV--GSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTS--CHHHHHHHHHHHHH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHHH
Confidence 57999999995 46789999999998
No 183
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=33.56 E-value=91 Score=31.81 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhcccCCCCEEEEEcchhhhhccC-hhH-HHHHHHHhccCCCCEEEEeecc
Q 003126 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN-NDA-YGALKSKLENLPSNVVVIGSHT 745 (845)
Q Consensus 688 llI~sL~EVL~SeS~~~PlILYikDvEK~l~~n-~e~-y~~fq~~LekLsg~VvIIGSq~ 745 (845)
-+++.|++.+.. ..+ ||+|-|++.+.... .+. +..| ++-. .++.||+.-+
T Consensus 121 ~~~~~l~~~l~~---~~~-vlilDEi~~l~~~~~~~~~l~~l---~~~~-~~~~iI~~t~ 172 (384)
T 2qby_B 121 EYIDKIKNGTRN---IRA-IIYLDEVDTLVKRRGGDIVLYQL---LRSD-ANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHHSS---SCE-EEEEETTHHHHHSTTSHHHHHHH---HTSS-SCEEEEEECS
T ss_pred HHHHHHHHHhcc---CCC-EEEEECHHHhccCCCCceeHHHH---hcCC-cceEEEEEEC
Confidence 345666666653 344 99999999965532 343 3222 2222 6677776654
No 184
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=33.56 E-value=27 Score=32.39 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=28.1
Q ss_pred CCCceeeccCCCchHHHHHHHHHHHhhc---cCcEEEEeccCC
Q 003126 491 MCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLL 530 (845)
Q Consensus 491 ~s~rILLSGPaGsEiYQE~LaKALA~~f---~AkLLilDs~~l 530 (845)
..+.++|.||+|+ =.-+|++||++++ |.+.+.++..++
T Consensus 35 ~g~~~~l~G~~G~--GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGA--GKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTT--TTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 4567999999994 4668999999988 555666665443
No 185
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=33.38 E-value=22 Score=33.35 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=25.9
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhh-ccCcEEEEe
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKH-FSARLLIVD 526 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~-f~AkLLilD 526 (845)
...|+|+||+|| =.-+++|+||+. +|.+.+-+|
T Consensus 10 ~~~I~l~G~~Gs--GKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGT--GKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTS--SHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHHhcCCCEEeeHH
Confidence 467999999994 467899999999 786655444
No 186
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=33.05 E-value=8.9 Score=39.04 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=34.4
Q ss_pred cCCCCCCCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCCC
Q 003126 485 ASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (845)
Q Consensus 485 t~~Lss~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l~ 531 (845)
+.-+.--.+.|||.||+| .=.-.||.+||+.+. .|+-.|+..++
T Consensus 27 a~~v~~~g~~ilI~GpsG--sGKStLA~~La~~g~-~iIsdDs~~v~ 70 (205)
T 2qmh_A 27 GVLVDIYGLGVLITGDSG--VGKSETALELVQRGH-RLIADDRVDVY 70 (205)
T ss_dssp SEEEEETTEEEEEECCCT--TTTHHHHHHHHTTTC-EEEESSEEEEE
T ss_pred EEEEEECCEEEEEECCCC--CCHHHHHHHHHHhCC-eEEecchhhee
Confidence 333333457899999999 456679999999998 99999987776
No 187
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=32.80 E-value=18 Score=34.91 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=26.3
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
..|+|.||+|| =.-++++.||++++.+.+-.|
T Consensus 6 ~~I~l~G~~Gs--GKsT~a~~La~~l~~~~i~~d 37 (217)
T 3be4_A 6 HNLILIGAPGS--GKGTQCEFIKKEYGLAHLSTG 37 (217)
T ss_dssp CEEEEEECTTS--SHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhCceEEehh
Confidence 47999999995 467899999999998766554
No 188
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=32.34 E-value=25 Score=34.70 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=30.3
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCc--------EEEEeccCCCC
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSAR--------LLIVDSLLLPG 532 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~Ak--------LLilDs~~l~G 532 (845)
..|.|+||+|| =--++++.||+.|+++ .+++|.-+|+-
T Consensus 23 ~iI~I~G~~GS--GKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 23 FLIGVSGGTAS--GKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEEECSTTS--SHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEEECCCCC--CHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 36999999995 4678999999999986 56788766653
No 189
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=31.99 E-value=33 Score=34.97 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=28.0
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhc----cCcEEEEecc
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHF----SARLLIVDSL 528 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f----~AkLLilDs~ 528 (845)
+.|||+||+| .-..+|++++++.+ +...+.++..
T Consensus 45 ~~~li~G~~G--~GKTtl~~~l~~~~~~~~~~~~~~i~~~ 82 (389)
T 1fnn_A 45 PRATLLGRPG--TGKTVTLRKLWELYKDKTTARFVYINGF 82 (389)
T ss_dssp CEEEEECCTT--SSHHHHHHHHHHHHTTSCCCEEEEEETT
T ss_pred CeEEEECCCC--CCHHHHHHHHHHHHhhhcCeeEEEEeCc
Confidence 4799999999 56788999999998 5677777753
No 190
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=31.72 E-value=16 Score=33.14 Aligned_cols=28 Identities=25% Similarity=0.169 Sum_probs=22.1
Q ss_pred ceeeccCCCchHHHHHHHHHHHh-hccCcEE
Q 003126 494 RILLSGPAGSEIYQETLAKALAK-HFSARLL 523 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~-~f~AkLL 523 (845)
-|+|.||+|| -.-+++|+||+ .+++..+
T Consensus 4 ~I~i~G~~Gs--GKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 4 IILTIGCPGS--GKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEECCTTS--SHHHHHHHHHHHSTTEEEE
T ss_pred EEEEecCCCC--CHHHHHHHHHhhcCCcEEe
Confidence 5999999995 47789999999 5665433
No 191
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=31.47 E-value=20 Score=35.50 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=25.8
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
.+|+|+||+||= .-++++.||++|++..+-.|
T Consensus 30 ~~I~l~G~~GsG--KsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 30 GRYIFLGAPGSG--KGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp EEEEEECCTTSS--HHHHHHHHHHHHCCEEEEHH
T ss_pred cEEEEECCCCCC--HHHHHHHHHHHhCCeEEecH
Confidence 479999999964 68899999999987655443
No 192
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=31.46 E-value=1.4e+02 Score=30.76 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=34.9
Q ss_pred HHHHHHHhhhcccCCCCEEEEEcchhhhhcc---ChhHHHHHHHHhccCC-----CCEEEEee
Q 003126 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG---NNDAYGALKSKLENLP-----SNVVVIGS 743 (845)
Q Consensus 689 lI~sL~EVL~SeS~~~PlILYikDvEK~l~~---n~e~y~~fq~~LekLs-----g~VvIIGS 743 (845)
+++.|.+.|.. ...|+||+|-|++.+... +.+....|...++.++ .+|.||+.
T Consensus 125 ~~~~l~~~l~~--~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~ 185 (412)
T 1w5s_A 125 ILKALVDNLYV--ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLV 185 (412)
T ss_dssp HHHHHHHHHHH--HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEE
T ss_pred HHHHHHHHHHh--cCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEE
Confidence 45566666652 356999999999986542 4566655556676665 57666643
No 193
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=31.16 E-value=30 Score=38.84 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=31.6
Q ss_pred CCCceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccC
Q 003126 491 MCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (845)
Q Consensus 491 ~s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~ 529 (845)
..+-|||.||+|+ -..+|||+||+.++.++..++...
T Consensus 107 ~g~~vll~Gp~Gt--GKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGV--GKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSS--SHHHHHHHHHHHHTCEEEEECCCC
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHHhcCCCeEEEEecc
Confidence 4668999999994 578999999999999998887644
No 194
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=31.13 E-value=26 Score=35.45 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=21.7
Q ss_pred CCceEEECCEEcCCCceEEeeCCCEEEEc
Q 003126 196 GKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (845)
Q Consensus 196 snGtV~VNGkkvgKg~kviL~~GDEIvfs 224 (845)
..|.|.|||+.+.+. ...+..||+|.+.
T Consensus 122 ~~G~V~VNG~~v~~p-s~~V~~gD~I~V~ 149 (209)
T 2vqe_D 122 RHGHITVNGRRVDLP-SYRVRPGDEIAVA 149 (209)
T ss_dssp HTTCEEETTEECCCT-TCBCCTTCEEEEC
T ss_pred HCCCEEECCEEeCcC-CcCcCCCCEEEEc
Confidence 467899999999755 3346789999884
No 195
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=31.06 E-value=22 Score=32.54 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=24.0
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEE
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLL 523 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLL 523 (845)
..|+|.||+|| =.-++++.||++++.+.+
T Consensus 4 ~~I~l~G~~Gs--GKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 4 LVVFVLGGPGA--GKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp EEEEEECCTTS--SHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhCCeEE
Confidence 36999999995 467899999999998654
No 196
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=30.97 E-value=23 Score=33.31 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=25.7
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
..|+|.||+|| -.-+++|.||++++...+-.|
T Consensus 16 ~~I~l~G~~Gs--GKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGA--GKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTS--SHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCC--CHHHHHHHHHHHcCceEEeHH
Confidence 46999999995 467899999999997655444
No 197
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=30.94 E-value=39 Score=36.81 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=28.9
Q ss_pred CCEEEEEcchhhhhc---cChhHHHHHHHHhccCCCCEEEEeecc
Q 003126 704 SPLIVFVKDIEKSLT---GNNDAYGALKSKLENLPSNVVVIGSHT 745 (845)
Q Consensus 704 ~PlILYikDvEK~l~---~n~e~y~~fq~~LekLsg~VvIIGSq~ 745 (845)
.|-||+|-|+..+.. ...++++.|....+ .|..+||+++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~--~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT--TTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHH--CCCeEEEEECC
Confidence 688999999998553 34566766666554 36788888876
No 198
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=30.90 E-value=65 Score=30.17 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=16.0
Q ss_pred cceeecCCcchhHHHHHHHHHH
Q 003126 803 NKVTIQLPQDEALLSDWKQQLE 824 (845)
Q Consensus 803 NkI~I~pPqDE~~L~~WK~QLE 824 (845)
..|++.+|.++.....|++.++
T Consensus 167 ~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 167 LTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp EEEECCCCCGGGHHHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHH
Confidence 6778888888777777766654
No 199
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=29.89 E-value=23 Score=36.72 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=23.1
Q ss_pred CCCceeeccCCCchHHHHHHHHHHHhhccC
Q 003126 491 MCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (845)
Q Consensus 491 ~s~rILLSGPaGsEiYQE~LaKALA~~f~A 520 (845)
..+.+||.||+| ....++|++||+.+..
T Consensus 23 ~~~a~L~~G~~G--~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 23 GHHALLIQALPG--MGDDALIYALSRYLLC 50 (334)
T ss_dssp CCSEEEEECCTT--SCHHHHHHHHHHHHTC
T ss_pred cceeEEEECCCC--chHHHHHHHHHHHHhC
Confidence 346799999999 6788899999998764
No 200
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=29.87 E-value=23 Score=31.37 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=24.6
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
.-|+|+||+|| =.-+++++| +.+|.+.+-+|
T Consensus 2 ~~I~l~G~~Gs--GKsT~a~~L-~~~g~~~i~~~ 32 (179)
T 3lw7_A 2 KVILITGMPGS--GKSEFAKLL-KERGAKVIVMS 32 (179)
T ss_dssp CEEEEECCTTS--CHHHHHHHH-HHTTCEEEEHH
T ss_pred cEEEEECCCCC--CHHHHHHHH-HHCCCcEEEHh
Confidence 35899999995 467899999 99998865443
No 201
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=29.82 E-value=90 Score=35.14 Aligned_cols=45 Identities=24% Similarity=0.502 Sum_probs=28.5
Q ss_pred CCCCEEEEEcchhhhhc--------cChhHHHHHHHHhccCC-----CCEEEEeeccc
Q 003126 702 KSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLP-----SNVVVIGSHTQ 746 (845)
Q Consensus 702 ~~~PlILYikDvEK~l~--------~n~e~y~~fq~~LekLs-----g~VvIIGSq~~ 746 (845)
+..|-||||.+++.+.. ++.+....+...|..|+ ..|+||+.-+.
T Consensus 121 ~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~ 178 (499)
T 2dhr_A 121 RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 178 (499)
T ss_dssp SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSC
T ss_pred hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCC
Confidence 46789999999988543 13344444555554443 35777877664
No 202
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=29.68 E-value=20 Score=32.99 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=23.9
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEE
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLL 523 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLL 523 (845)
..|+|.||+|| =.-+++|.||+.++.+.+
T Consensus 5 ~~I~l~G~~Gs--GKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGA--GKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTS--CHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhCCeEe
Confidence 46999999995 467899999999986543
No 203
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=29.67 E-value=25 Score=32.18 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=22.1
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEE
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLL 523 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLL 523 (845)
..|+|.|++|| -.-+++|.||++++.+.+
T Consensus 6 ~~I~l~G~~Gs--GKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGV--GKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC------CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCC--CHHHHHHHHHHhcCCCEE
Confidence 46999999994 466799999999999865
No 204
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=29.60 E-value=29 Score=34.58 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=21.6
Q ss_pred CCceEEECCEEcCCCceEEeeCCCEEEEc
Q 003126 196 GKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (845)
Q Consensus 196 snGtV~VNGkkvgKg~kviL~~GDEIvfs 224 (845)
.+|.|.|||+.+.+. ...|..||+|.+.
T Consensus 26 ~~G~V~VNG~~v~~~-~~~v~~gD~I~v~ 53 (234)
T 1ksk_A 26 RGNRVTVDGEIVRNA-AFKLLPEHDVAYD 53 (234)
T ss_dssp HTTCEEETTEECCCT-TCEECTTCCEEET
T ss_pred HcCeEEECCEEeCCC-CCCCCCCCEEEEe
Confidence 367899999998643 4457889999883
No 205
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=29.39 E-value=74 Score=31.71 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=29.6
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccC
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~ 529 (845)
+-|+++||+| +=.-+|+++++++.+.+.+.+|...
T Consensus 31 ~~v~i~G~~G--~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRR--TGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTT--SSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCC--CCHHHHHHHHHHhcCCCEEEEEchh
Confidence 6899999999 6778899999999887778888643
No 206
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=29.39 E-value=30 Score=34.87 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=21.1
Q ss_pred CCceEEECCEEcCCCceEEeeCCCEEEE
Q 003126 196 GKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (845)
Q Consensus 196 snGtV~VNGkkvgKg~kviL~~GDEIvf 223 (845)
.+|.|.|||+.+.+. ...|..||+|.+
T Consensus 25 ~~G~V~VNG~~v~~~-~~~v~~gD~I~v 51 (243)
T 1vio_A 25 RQSAVKINGEIVKSG-SVQISQEDEIYF 51 (243)
T ss_dssp HTTCEEETTEECCCT-TCEECTTSCEEE
T ss_pred HcCcEEECCEEeCCC-CCCcCCCCEEEE
Confidence 368899999998644 345789998877
No 207
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=29.39 E-value=39 Score=35.03 Aligned_cols=33 Identities=27% Similarity=0.564 Sum_probs=27.6
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
..++|.||+| .-.-+|+|+||+.+++++.....
T Consensus 52 ~~~ll~Gp~G--~GKTTLa~~ia~~l~~~~~~~sg 84 (334)
T 1in4_A 52 DHVLLAGPPG--LGKTTLAHIIASELQTNIHVTSG 84 (334)
T ss_dssp CCEEEESSTT--SSHHHHHHHHHHHHTCCEEEEET
T ss_pred CeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEec
Confidence 5699999999 46789999999999988765544
No 208
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=29.38 E-value=22 Score=35.34 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=29.5
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCC
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l 530 (845)
..|+|.||+|| -.-+|+|+||+.++....++|.-.|
T Consensus 33 ~~i~l~G~~Gs--GKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 33 IAILLGGQSGA--GKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp EEEEEESCGGG--TTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred eEEEEECCCCC--CHHHHHHHHHHhcCCCcEEEecHHH
Confidence 47999999995 4678999999999877777887444
No 209
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=29.21 E-value=23 Score=36.40 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=26.1
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
.-|+|+||+|+ ---+|+|+|++.++...+.||.
T Consensus 34 ~livl~G~sGs--GKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGS--GKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTS--CTHHHHHHHHHHTTTCCEEECT
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhCCCeEEEec
Confidence 46899999994 4668999999998655677765
No 210
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=28.99 E-value=23 Score=32.30 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=24.7
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEE
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLil 525 (845)
..|+|.||+|| =.-+++|.||++++...+-.
T Consensus 7 ~~I~l~G~~Gs--GKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGS--GKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTS--SHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCC--CHHHHHHHHHHHhCCeEeeH
Confidence 46999999994 46789999999999765433
No 211
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=28.96 E-value=71 Score=31.52 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=29.3
Q ss_pred CCCEEEEEcchhhhhccChhHHHHHHHHhccCCCCEEEEeecc
Q 003126 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 745 (845)
Q Consensus 703 ~~PlILYikDvEK~l~~n~e~y~~fq~~LekLsg~VvIIGSq~ 745 (845)
..+-||+|.|++.+ . .+..+.|.+.|+..+.++++|+.-+
T Consensus 101 ~~~~vliiDe~~~l-~--~~~~~~L~~~le~~~~~~~~i~~~~ 140 (319)
T 2chq_A 101 APFKIIFLDEADAL-T--ADAQAALRRTMEMYSKSCRFILSCN 140 (319)
T ss_dssp CCCEEEEEETGGGS-C--HHHHHTTGGGTSSSSSSEEEEEEES
T ss_pred CCceEEEEeCCCcC-C--HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 56899999999984 2 3445556677888888887777654
No 212
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=28.88 E-value=19 Score=41.77 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=42.0
Q ss_pred CCCEEEEEcchhhhhccChhHHHHHHHHhccCCCCEEEEeecccCCCccccCCCCCcceeccCCcccccccccCCCcccc
Q 003126 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSR 782 (845)
Q Consensus 703 ~~PlILYikDvEK~l~~n~e~y~~fq~~LekLsg~VvIIGSq~~~d~~KeK~~~g~~~f~kfg~~~~aLldlafpd~~~r 782 (845)
..|.||||- +..+..+.|...|+ .+.|.+||..+..+-++.
T Consensus 266 ~~~~iLfiD-------~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~------------------------------ 306 (758)
T 3pxi_A 266 AGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTLDEYRKY------------------------------ 306 (758)
T ss_dssp CCCCEEEEC-------C--------CCCTT--SSSCEEEEECCTTTTHHH------------------------------
T ss_pred cCCEEEEEc-------CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHH------------------------------
Confidence 688999998 55566666666666 678999999885221110
Q ss_pred ccccCCCchHHHhhhhccCCcceeecCCcchhHHHHHHHHH
Q 003126 783 LHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 823 (845)
Q Consensus 783 l~d~~kd~~k~~e~LtkLFPNkI~I~pPqDE~~L~~WK~QL 823 (845)
-+.+..|..-| +.|.|.+|..|.....|+..+
T Consensus 307 --------~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 307 --------IEKDAALERRF-QPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp --------HTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTT
T ss_pred --------hhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHH
Confidence 01123344456 678888888887777777543
No 213
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.69 E-value=56 Score=26.76 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=27.9
Q ss_pred CCcccCCCCeeeEeecCCCCCccCCCCCCCCCcccceeeeecccCCCCceeeec
Q 003126 595 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRF 648 (845)
Q Consensus 595 ~~~t~kkGDRVkyvGs~~~~s~~~~~~R~ps~G~rG~V~l~fE~N~ssKVgVrF 648 (845)
.+..|++||.|+-+ .||-.|..|+| -+.|+. ||-|..
T Consensus 4 ~~~~f~~GD~V~V~-------------~Gpf~g~~G~V---~evd~e-~v~V~v 40 (59)
T 2e6z_A 4 GSSGFQPGDNVEVC-------------EGELINLQGKI---LSVDGN-KITIMP 40 (59)
T ss_dssp CCSSCCTTSEEEEC-------------SSTTTTCEEEE---CCCBTT-EEEEEE
T ss_pred ccccCCCCCEEEEe-------------ecCCCCCEEEE---EEEeCC-EEEEEE
Confidence 45678999999774 46778899999 355665 888775
No 214
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=28.56 E-value=23 Score=36.25 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=27.1
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
...||+.||+|| --.++|.|||+++.-+.+.++
T Consensus 58 kn~ili~GPPGt--GKTt~a~ala~~l~g~i~~fa 90 (212)
T 1tue_A 58 KNCLVFCGPANT--GKSYFGMSFIHFIQGAVISFV 90 (212)
T ss_dssp CSEEEEESCGGG--CHHHHHHHHHHHHTCEECCCC
T ss_pred ccEEEEECCCCC--CHHHHHHHHHHHhCCCeeeEE
Confidence 346999999994 578899999999987776655
No 215
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=28.26 E-value=26 Score=38.97 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=31.0
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCCC
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l~ 531 (845)
-|.++||+|+ -.-.|+++||+.|+..++-.|+-.+|
T Consensus 4 ~i~i~Gptgs--GKttla~~La~~~~~~iis~Ds~QvY 39 (409)
T 3eph_A 4 VIVIAGTTGV--GKSQLSIQLAQKFNGEVINSDSMQVY 39 (409)
T ss_dssp EEEEEECSSS--SHHHHHHHHHHHHTEEEEECCTTTTB
T ss_pred EEEEECcchh--hHHHHHHHHHHHCCCeEeecCcccee
Confidence 5889999994 46789999999999999888987666
No 216
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=27.99 E-value=17 Score=30.96 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=23.7
Q ss_pred ceEEECCEEcCCCc--eEEeeCCCEEEEcc
Q 003126 198 GEVEVNGNVHPKDS--QVVLRGGDELVFSP 225 (845)
Q Consensus 198 GtV~VNGkkvgKg~--kviL~~GDEIvfs~ 225 (845)
=.|.|||+.|.|.. ...|+.||.|-+-+
T Consensus 31 vAV~vNg~iVpr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 31 FAVALNYDVVPRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp CEEEESSSEECHHHHTTCBCCTTCEEEEEC
T ss_pred EEEEECCEECChHHcCcccCCCCCEEEEEc
Confidence 36899999999985 58999999998744
No 217
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=27.65 E-value=1.4e+02 Score=33.04 Aligned_cols=44 Identities=9% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCCCEEEEEcchhhhhccChhHHHHHHHHhccCCCCEEEEeecc
Q 003126 702 KSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 745 (845)
Q Consensus 702 ~~~PlILYikDvEK~l~~n~e~y~~fq~~LekLsg~VvIIGSq~ 745 (845)
...+.||+|-|++.+....++....|...++....+||+||...
T Consensus 146 ~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~ 189 (516)
T 1sxj_A 146 NGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNER 189 (516)
T ss_dssp STTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCT
T ss_pred cCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 46789999999999766666677778888888888999999765
No 218
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=27.34 E-value=79 Score=28.18 Aligned_cols=53 Identities=21% Similarity=0.401 Sum_probs=35.5
Q ss_pred HHHHHHHhhhcccCCCCEEEEEcchhhhhc------cChhHHHHHHHHhccCCCCEEEEeecc
Q 003126 689 AINELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHT 745 (845)
Q Consensus 689 lI~sL~EVL~SeS~~~PlILYikDvEK~l~------~n~e~y~~fq~~LekLsg~VvIIGSq~ 745 (845)
.+..+++.+.. ...|.||+|.|++.+.. +..++.+.|...++. ++|+|||+-+
T Consensus 102 ~~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~ 160 (187)
T 2p65_A 102 RLKSILKEVQD--AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATT 160 (187)
T ss_dssp HHHHHHHHHHH--TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEEC
T ss_pred HHHHHHHHHHh--cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecC
Confidence 34455555443 24789999999999652 126677778777765 5677777665
No 219
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=27.10 E-value=32 Score=31.23 Aligned_cols=32 Identities=31% Similarity=0.545 Sum_probs=25.6
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
...|.|.||+|| =--+|+|+||..++... +|.
T Consensus 4 ~~~i~l~G~~Gs--GKSTl~~~La~~l~~~~--id~ 35 (173)
T 1kag_A 4 KRNIFLVGPMGA--GKSTIGRQLAQQLNMEF--YDS 35 (173)
T ss_dssp CCCEEEECCTTS--CHHHHHHHHHHHTTCEE--EEH
T ss_pred CCeEEEECCCCC--CHHHHHHHHHHHhCCCE--Eec
Confidence 357999999994 46789999999999754 454
No 220
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=27.06 E-value=38 Score=33.80 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=27.3
Q ss_pred CceeeccCCCchHHHHHHHHHHHhh---ccCcEEEEec
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKH---FSARLLIVDS 527 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~---f~AkLLilDs 527 (845)
.-|+|+|++|| -.-+++++||++ .|.+.+++|.
T Consensus 5 ~lIvl~G~pGS--GKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGV--GKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTS--SHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCC--CHHHHHHHHHHHHHhCCCEEEEECc
Confidence 36999999995 567899999998 7888887765
No 221
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=27.00 E-value=1e+02 Score=31.27 Aligned_cols=51 Identities=8% Similarity=0.023 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhcccCCCCEEEEEcchhhhhccChhHHHHHHHHhccCCC----CEEEEee
Q 003126 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPS----NVVVIGS 743 (845)
Q Consensus 688 llI~sL~EVL~SeS~~~PlILYikDvEK~l~~n~e~y~~fq~~LekLsg----~VvIIGS 743 (845)
-+++.|.+.+.. ...|.||+|-|++.+ ..+....|...++.++. ++.||+.
T Consensus 111 ~~~~~l~~~l~~--~~~~~vlilDE~~~l---~~~~~~~L~~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 111 EFLALLVEHLRE--RDLYMFLVLDDAFNL---APDILSTFIRLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp HHHHHHHHHHHH--TTCCEEEEEETGGGS---CHHHHHHHHHHTTCHHHHSSCCEEEEEE
T ss_pred HHHHHHHHHHhh--cCCeEEEEEECcccc---chHHHHHHHHHHHhCCCCCcCCEEEEEE
Confidence 345555666543 456999999999985 56777777777776653 6666654
No 222
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=26.89 E-value=42 Score=30.72 Aligned_cols=31 Identities=26% Similarity=0.192 Sum_probs=26.0
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhc---cCcEEEEe
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHF---SARLLIVD 526 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f---~AkLLilD 526 (845)
.|.|.|++|| -.-++++.||+++ |.+.+..|
T Consensus 2 ~I~l~G~~Gs--GKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGS--GKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTS--CHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCC--CHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4899999995 5778999999998 88877665
No 223
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=26.80 E-value=27 Score=33.91 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=24.5
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhccCcEEEE
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f~AkLLil 525 (845)
.|+|.||+|| =.-++++.||++++.+.+-.
T Consensus 2 ~I~l~G~~Gs--GKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGS--GKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTS--CHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCC--CHHHHHHHHHHHhCCeEEch
Confidence 5999999995 46889999999998765444
No 224
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=26.80 E-value=39 Score=35.21 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=26.4
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhc------cCcEEEEec
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHF------SARLLIVDS 527 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f------~AkLLilDs 527 (845)
.+.+||.||+|+ ...++|++||+.+ ...++.+|.
T Consensus 18 ~~~~Lf~Gp~G~--GKtt~a~~la~~~~~~~~~~~d~~~l~~ 57 (305)
T 2gno_A 18 GISILINGEDLS--YPREVSLELPEYVEKFPPKASDVLEIDP 57 (305)
T ss_dssp SEEEEEECSSSS--HHHHHHHHHHHHHHTSCCCTTTEEEECC
T ss_pred CcEEEEECCCCC--CHHHHHHHHHHhCchhhccCCCEEEEcC
Confidence 368999999995 7899999999963 346666663
No 225
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=26.80 E-value=22 Score=35.65 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=45.7
Q ss_pred cccccccccchhhHHHHHHHhhhccccc--cccccccCCCCCCCCceeeccCCC---chHHHHHHHHHHHhhccCcEEEE
Q 003126 451 VSFESFPYYLSDITKNVLIASTYVHLKC--NNFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKALAKHFSARLLIV 525 (845)
Q Consensus 451 vSFd~FPYYLSE~TK~~L~saa~vHLk~--~e~skyt~~Lss~s~rILLSGPaG---sEiYQE~LaKALA~~f~AkLLil 525 (845)
.+|++++ |++.....|....|.+|.. .+..... -.-.+.+++++|.| |..|...+...+.+.-+.+.|++
T Consensus 6 ~~f~~~~--l~~~~~~~l~~~g~~~~~~~Q~~~i~~~---~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil 80 (367)
T 1hv8_A 6 MNFNELN--LSDNILNAIRNKGFEKPTDIQMKVIPLF---LNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIIL 80 (367)
T ss_dssp CCGGGSS--CCHHHHHHHHHHTCCSCCHHHHHHHHHH---HHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEE
T ss_pred CchhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHH---hCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEE
Confidence 4688776 8999999999888877663 1221111 11136899999999 66777666555544445566655
No 226
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=26.00 E-value=30 Score=36.20 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=22.3
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccC
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSA 520 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~A 520 (845)
-..|||.||+|| ---+||+|||++++.
T Consensus 104 ~n~~~l~Gppgt--GKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATT--GKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTS--SHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCC--CHHHHHHHHHhhhcc
Confidence 346999999995 578899999998653
No 227
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=25.99 E-value=41 Score=33.49 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhhhcccCCCCEEEEEcchhhh---hccChhHHHHHHHHhcc-CCCCEEEEeec
Q 003126 686 DKLAINELFEVALNESKSSPLIVFVKDIEKS---LTGNNDAYGALKSKLEN-LPSNVVVIGSH 744 (845)
Q Consensus 686 eKllI~sL~EVL~SeS~~~PlILYikDvEK~---l~~n~e~y~~fq~~Lek-Lsg~VvIIGSq 744 (845)
..-+++.||+ +..-....|+||.+.|.++. ..-+... ++.+++ .||+..+|--.
T Consensus 46 n~~Av~rl~~-~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~----~~ll~~~~PGp~T~il~~ 103 (206)
T 1k7j_A 46 DKNAMERICR-IRQLPDGHNFTLMCRDLSELSTYSFVDNVA----FRLMKNNTPGNYTFILKG 103 (206)
T ss_dssp CHHHHHHHHH-HHTCCTTCCCEEECSSHHHHHHHBCCCHHH----HHHHHTSCSSSEEEEEEB
T ss_pred CHHHHHHHHH-HcCCCCCCCEEEEECCHHHHHHHhcCCHHH----HHHHHcCCCCCeEEEEEC
Confidence 5678999999 55555688999999997753 2223332 233444 58988888654
No 228
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=25.99 E-value=47 Score=30.86 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=26.7
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhc-cCcEEEEe
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHF-SARLLIVD 526 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f-~AkLLilD 526 (845)
...|.|.||.|| -.-++++.||+++ |.+.+.+|
T Consensus 4 ~~~I~l~G~~Gs--GKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKS--GKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTS--SHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCC--CHHHHHHHHHHHHCCCceEEEe
Confidence 457999999994 5788999999999 57766554
No 229
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=25.84 E-value=29 Score=31.91 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=22.2
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCc
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSAR 521 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~Ak 521 (845)
+.|||.||+| .-..+|++++|+.++..
T Consensus 46 ~~~ll~G~~G--~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFSGTRG--VGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEECSTT--SCHHHHHHHHHHHHHCT
T ss_pred eEEEEECCCC--CCHHHHHHHHHHHhcCC
Confidence 4699999999 56778999999988643
No 230
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=25.65 E-value=49 Score=33.40 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=30.4
Q ss_pred CCCCceeeccCCCchHHHHHHHHHHHhhc------cCcEEEEecc
Q 003126 490 TMCPRILLSGPAGSEIYQETLAKALAKHF------SARLLIVDSL 528 (845)
Q Consensus 490 s~s~rILLSGPaGsEiYQE~LaKALA~~f------~AkLLilDs~ 528 (845)
...+.|||.||+| .=..+|++++|+.+ +...+.++..
T Consensus 43 ~~~~~vli~G~~G--~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 43 EKPNNIFIYGLTG--TGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCCCEEEEECTT--SSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCCeEEEECCCC--CCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 3456899999999 56778999999988 8888888854
No 231
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=25.63 E-value=35 Score=31.76 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=25.7
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEe
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilD 526 (845)
+.|.|+||+|| ---+++|+||+.+|.+++=.|
T Consensus 3 ~~i~i~G~~Gs--GKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 3 GIVTIDGPSAS--GKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp SEEEEECSTTS--SHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHhcCCceeccc
Confidence 37999999995 467899999999997665444
No 232
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.61 E-value=21 Score=30.19 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=21.9
Q ss_pred CceEEECCEEcCCC-ceEEeeCCCEEEEcc
Q 003126 197 KGEVEVNGNVHPKD-SQVVLRGGDELVFSP 225 (845)
Q Consensus 197 nGtV~VNGkkvgKg-~kviL~~GDEIvfs~ 225 (845)
.|.|+|||+.|.|- ..|....+|+|.|.-
T Consensus 32 ~G~V~Vng~~v~kps~~V~~~~~d~I~~~~ 61 (71)
T 2cqj_A 32 QGHVRVGPDVVTDPAFLVTRSMEDFVTWVD 61 (71)
T ss_dssp TTCEEETTBCCCCTTCEEEHHHHTTEEESC
T ss_pred CCcEEECCEEECCCCCCCCCCCCcEEEEEC
Confidence 47899999999875 555555589998743
No 233
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=25.56 E-value=26 Score=33.61 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=23.9
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcE
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARL 522 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkL 522 (845)
..|+|.||+|+ -.-+++|.||++++...
T Consensus 6 ~~I~l~G~~Gs--GKsT~~~~La~~l~~~~ 33 (222)
T 1zak_A 6 LKVMISGAPAS--GKGTQCELIKTKYQLAH 33 (222)
T ss_dssp CCEEEEESTTS--SHHHHHHHHHHHHCCEE
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhCCce
Confidence 57999999995 46889999999999644
No 234
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=25.32 E-value=1.3e+02 Score=28.13 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=23.8
Q ss_pred ceeeeccCCCCCCCCCC------CCCCCCCCceeccCccc
Q 003126 643 KIGVRFDRSIPEGNNLG------GFCEDDHGFFCTASSLR 676 (845)
Q Consensus 643 KVgVrFD~~i~dg~dlg------~~ce~~~g~fc~a~~lr 676 (845)
=|||.||.+ -.-||.. =.|.+.||.||....++
T Consensus 64 wvGVElDep-~GKnDGsv~G~rYF~C~p~~GiFVr~~~v~ 102 (112)
T 2coy_A 64 WVGVILDEA-KGKNDGTVQGRKYFTCDEGHGIFVRQSQIQ 102 (112)
T ss_dssp EEEEEESSS-CSSBSSEETTEECSCCCTTTEEEECGGGEE
T ss_pred EEEEEECCC-CCCCCCEECCEEeeecCCCeEEEEchHHeE
Confidence 599999987 3334443 37999999998776554
No 235
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=25.19 E-value=33 Score=34.77 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=22.5
Q ss_pred CCceEEECCEEcCCCceEEeeCCCEEEEcc
Q 003126 196 GKGEVEVNGNVHPKDSQVVLRGGDELVFSP 225 (845)
Q Consensus 196 snGtV~VNGkkvgKg~kviL~~GDEIvfs~ 225 (845)
..|.|.|||+.|.+.. ..+..||+|.+--
T Consensus 112 ~~G~V~VNG~~V~~pS-~~V~~gD~I~V~~ 140 (201)
T 3bbn_D 112 NHRHILVNGRIVDIPS-YRCKPQDTIMARD 140 (201)
T ss_dssp HTTCEEETTEECCCTT-CBCCTTEEEEECS
T ss_pred hCCcEEeCCEEEeecc-eecCCCCEEEEcc
Confidence 4578999999998764 3457899998854
No 236
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.03 E-value=26 Score=38.41 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=21.3
Q ss_pred CCCEEEEEcchhhhhccChhHHHHHHHHhccCCCCEEEEeeccc
Q 003126 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (845)
Q Consensus 703 ~~PlILYikDvEK~l~~n~e~y~~fq~~LekLsg~VvIIGSq~~ 746 (845)
..|.||||- +..+..+.|...|+ .|.|.|||..+.
T Consensus 266 ~~~~iLfiD-------~~~~a~~~L~~~L~--~g~v~vI~at~~ 300 (468)
T 3pxg_A 266 AGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTL 300 (468)
T ss_dssp CCCCEEEEC-------C--------CCCTT--SSSCEEEEECCT
T ss_pred cCCeEEEEe-------CchhHHHHHHHhhc--CCCEEEEecCCH
Confidence 578999987 55666666666665 578999999885
No 237
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=24.89 E-value=38 Score=33.70 Aligned_cols=64 Identities=13% Similarity=0.140 Sum_probs=40.7
Q ss_pred cccccccccccchhhHHHHHHHhhhcccccc--ccccccCCCCCCCCceeeccCCC---chHHHHHHHHHHHh
Q 003126 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCN--NFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKALAK 516 (845)
Q Consensus 449 i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~--e~skyt~~Lss~s~rILLSGPaG---sEiYQE~LaKALA~ 516 (845)
-..+|++|+..|++.....|....|-++..- +..... + .++.+|+++|.| |..|+--+...|.+
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~--~--~~~~~lv~a~TGsGKT~~~~l~~l~~l~~ 118 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPL--L--EGRDLLAAAKTGSGKTLAFLIPAVELIVK 118 (262)
T ss_dssp GGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHH--H--HTCCCEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred ccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHH--h--CCCcEEEEccCCCCchHHHHHHHHHHHHh
Confidence 3568999998899999999998887766531 111111 1 137799999999 67887776666654
No 238
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=24.79 E-value=1.2e+02 Score=26.91 Aligned_cols=41 Identities=34% Similarity=0.440 Sum_probs=30.3
Q ss_pred ceEEEEEecCCceEEECCEEcCCCceEEeeCCCEEEEccCCCeeEEE
Q 003126 187 SGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIF 233 (845)
Q Consensus 187 ~vA~LEd~ssnGtV~VNGkkvgKg~kviL~~GDEIvfs~~g~~aYIF 233 (845)
.-.++.+++..|++.|||+ ...|+.||-+.+....-|.|..
T Consensus 38 ~~~i~~v~~G~~~~~i~~~------~~~l~~Gd~~~i~p~~~H~~~~ 78 (164)
T 2arc_A 38 GYILNLTIRGQGVVKNQGR------EFVCRPGDILLFPPGEIHHYGR 78 (164)
T ss_dssp SEEEEEEEEECEEEEETTE------EEEECTTCEEEECTTCCEEEEE
T ss_pred ceEEEEEEEeEEEEEECCE------EEEecCCeEEEEcCCCCEEEEe
Confidence 3467788889999999986 4678888877776655666543
No 239
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=24.75 E-value=28 Score=31.79 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=24.6
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhccCc---EEEEec
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHFSAR---LLIVDS 527 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f~Ak---LLilDs 527 (845)
.|+|.||+|+ -.-+|+++||++++.. +..+|.
T Consensus 3 ~I~i~G~~Gs--GKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGV--GKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTS--CHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCC--CHHHHHHHHHHHHHhcCceEEEEEC
Confidence 5999999995 4778999999998832 455554
No 240
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=24.74 E-value=75 Score=36.18 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=41.6
Q ss_pred ccccccccccchhhHHHHHHHhhhcccccc--ccccccCCCCCCCCceeeccCCC---chHHHHHHHHHHH
Q 003126 450 EVSFESFPYYLSDITKNVLIASTYVHLKCN--NFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKALA 515 (845)
Q Consensus 450 ~vSFd~FPYYLSE~TK~~L~saa~vHLk~~--e~skyt~~Lss~s~rILLSGPaG---sEiYQE~LaKALA 515 (845)
..+|+++| |++..+..|-.-.|-+|..- +.... -+. .++.+|++||.| |..|...+.+++.
T Consensus 7 ~~~~~~l~--l~~~~~~~l~~~g~~~l~~~Q~~~i~~--~~~-~~~~~lv~apTGsGKT~~~~l~il~~~~ 72 (715)
T 2va8_A 7 WMPIEDLK--LPSNVIEIIKKRGIKKLNPPQTEAVKK--GLL-EGNRLLLTSPTGSGKTLIAEMGIISFLL 72 (715)
T ss_dssp CCBGGGSS--SCHHHHHHHHTTSCCBCCHHHHHHHHT--TTT-TTCCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCcHHHcC--CCHHHHHHHHhCCCCCCCHHHHHHHHH--Hhc-CCCcEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 36799988 78888888877666666542 22111 011 278999999999 6788777766655
No 241
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=24.41 E-value=35 Score=34.76 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.3
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccC
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSA 520 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~A 520 (845)
+.+||+||+| .-..+||+++|+.++.
T Consensus 39 ~~~ll~G~~G--~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRG--VGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTT--SSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 4689999999 4688999999998864
No 242
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=24.18 E-value=2.2e+02 Score=28.37 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=12.0
Q ss_pred CCCEEEEEcchhhhh
Q 003126 703 SSPLIVFVKDIEKSL 717 (845)
Q Consensus 703 ~~PlILYikDvEK~l 717 (845)
..+-||||.|++.+-
T Consensus 89 ~~~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 89 EEGDILFIDEIHRLS 103 (324)
T ss_dssp CTTCEEEETTTTSCC
T ss_pred cCCCEEEEECCcccc
Confidence 457799999999854
No 243
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=23.89 E-value=1.3e+02 Score=26.19 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=29.8
Q ss_pred eEEEEEecCCceEEECCEEcCCCceEEeeCCCEEEEccCCCeeEE
Q 003126 188 GALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYI 232 (845)
Q Consensus 188 vA~LEd~ssnGtV~VNGkkvgKg~kviL~~GDEIvfs~~g~~aYI 232 (845)
.-++.+++..|++.|||+ .+.|+.||-|.+-.-..|.|.
T Consensus 55 ~Ei~~v~~G~~~~~i~~~------~~~l~~Gd~~~i~~~~~H~~~ 93 (128)
T 4i4a_A 55 YELFIVIQGNAIIRINDE------DFPVTKGDLIIIPLDSEHHVI 93 (128)
T ss_dssp EEEEEEEESEEEEEETTE------EEEEETTCEEEECTTCCEEEE
T ss_pred eEEEEEEeCEEEEEECCE------EEEECCCcEEEECCCCcEEeE
Confidence 466788888999999986 678899998888665555543
No 244
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=23.83 E-value=52 Score=30.54 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=35.5
Q ss_pred ccccccccchhhHHHHHHHhhhccccc--cccccccCCCCCCCCceeeccCCC---chHHHHHHHHHH
Q 003126 452 SFESFPYYLSDITKNVLIASTYVHLKC--NNFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKAL 514 (845)
Q Consensus 452 SFd~FPYYLSE~TK~~L~saa~vHLk~--~e~skyt~~Lss~s~rILLSGPaG---sEiYQE~LaKAL 514 (845)
+|++|| |++.....|....|..+.. .+...... .++.+++++|.| |..|.--+...|
T Consensus 2 ~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 2 EFKDFP--LKPEILEALHGRGLTTPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CGGGSC--CCHHHHHHHHHTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred ChhhcC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 688887 7888888888877755543 12221111 136799999999 445544444444
No 245
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=23.76 E-value=77 Score=36.31 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=44.1
Q ss_pred hHHHHHHHhhhcCCCCCcchhhHHHHHHHHhhhcccCCCccccccccccccchhhHHHHHHHhhhccccccccccccCCC
Q 003126 409 DEQREIRELLKDSDRPTVLISARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDL 488 (845)
Q Consensus 409 ee~~e~~~~~~~~~~~ts~~~~r~~~fk~~~~~~Vvdg~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~~e~skyt~~L 488 (845)
|+..+++++.++ + ..+++.+++-. | =| .|..|.+|+-+++---. |
T Consensus 191 ed~~~i~~l~~~-~--------~~~~l~~sIap-I-~G--------------~e~vK~aLll~L~GG~~-----k----- 235 (506)
T 3f8t_A 191 AELEEFRELADK-D--------PLTTFARAIAP-L-PG--------------AEEVGKMLALQLFSCVG-----K----- 235 (506)
T ss_dssp HHHHHHHHHHHS-C--------HHHHHHHHHCC-S-TT--------------CHHHHHHHHHHHTTCCS-----S-----
T ss_pred HHHHHHHHHHHH-H--------HHHHHHHHhcc-c-CC--------------CHHHHHHHHHHHcCCcc-----c-----
Confidence 455566777654 1 23556666655 3 22 46677777777663322 1
Q ss_pred CCCCCceeeccCCCchHHHHHHHHHH-Hhh
Q 003126 489 PTMCPRILLSGPAGSEIYQETLAKAL-AKH 517 (845)
Q Consensus 489 ss~s~rILLSGPaGsEiYQE~LaKAL-A~~ 517 (845)
....-.|||.|++|+ .++|||++ ++-
T Consensus 236 ~rgdihVLL~G~PGt---KS~Lar~i~~~i 262 (506)
T 3f8t_A 236 NSERLHVLLAGYPVV---CSEILHHVLDHL 262 (506)
T ss_dssp GGGCCCEEEESCHHH---HHHHHHHHHHHT
T ss_pred cCCceeEEEECCCCh---HHHHHHHHHHHh
Confidence 112236999999995 99999999 553
No 246
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=23.72 E-value=1.1e+02 Score=29.24 Aligned_cols=60 Identities=22% Similarity=0.244 Sum_probs=39.8
Q ss_pred cccccccccchhhHHHHHHHhhhccccc--cccccccCCCCCCCCceeeccCCC---chHHHHHHHHHHHh
Q 003126 451 VSFESFPYYLSDITKNVLIASTYVHLKC--NNFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKALAK 516 (845)
Q Consensus 451 vSFd~FPYYLSE~TK~~L~saa~vHLk~--~e~skyt~~Lss~s~rILLSGPaG---sEiYQE~LaKALA~ 516 (845)
.+|++|| |++.....|....|.++.. .+...... .++.+|+++|.| |..|.--+...|.+
T Consensus 25 ~~f~~~~--l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~----~~~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 25 TRFSDFP--LSKKTLKGLQEAQYRLVTEIQKQTIGLAL----QGKDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp SBGGGSC--CCHHHHHHHHHTTCCBCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 4799998 7899999998877766653 11111111 246799999999 66676655555543
No 247
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=23.46 E-value=41 Score=35.42 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=21.0
Q ss_pred CCceEEECCEEcCCCceEEeeCCCEEEEc
Q 003126 196 GKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (845)
Q Consensus 196 snGtV~VNGkkvgKg~kviL~~GDEIvfs 224 (845)
.+|.|.|||+.+..+ ..+..||+|.|.
T Consensus 29 ~~G~V~VNG~~v~~~--~~V~~gD~I~v~ 55 (290)
T 3dh3_A 29 EQGNVFLNGKRATIG--DQVKPGDVVKVN 55 (290)
T ss_dssp HTTCEEETTEECCTT--CEECTTCCEEET
T ss_pred HCCCEEECCEEccCC--cCcCCCCEEEec
Confidence 468899999999444 456789999883
No 248
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=23.44 E-value=1.5e+02 Score=29.34 Aligned_cols=40 Identities=33% Similarity=0.381 Sum_probs=29.7
Q ss_pred CCCEEEEEcchhhhhccChhHHHHHHHHhccCCCCEEEEeecc
Q 003126 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 745 (845)
Q Consensus 703 ~~PlILYikDvEK~l~~n~e~y~~fq~~LekLsg~VvIIGSq~ 745 (845)
..+-||+|.|++.+ +.+..+.|.+.++..+.++++|..-+
T Consensus 109 ~~~~vliiDe~~~l---~~~~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADAL---TQDAQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGS---CHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcC---CHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 56889999999984 23555667778888888877777543
No 249
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=23.34 E-value=2.1e+02 Score=30.35 Aligned_cols=95 Identities=11% Similarity=0.018 Sum_probs=57.2
Q ss_pred HHHHHHHhhhcccCCCCEEEEEcchhhhhccChhHHHHHHHHhccCCCCEEEEeecccCCCccccCCCCCcceeccCCcc
Q 003126 689 AINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQ 768 (845)
Q Consensus 689 lI~sL~EVL~SeS~~~PlILYikDvEK~l~~n~e~y~~fq~~LekLsg~VvIIGSq~~~d~~KeK~~~g~~~f~kfg~~~ 768 (845)
.++.+|+-+. ..+..++||+|-+++.+. +..-+|..|+ ..+.-.++++|||--+.+
T Consensus 118 ~L~~~f~~~~-~~~~~~~ii~lDE~d~l~-~q~~L~~l~~-~~~~~~s~~~vI~i~n~~--------------------- 173 (318)
T 3te6_A 118 ALNFYITNVP-KAKKRKTLILIQNPENLL-SEKILQYFEK-WISSKNSKLSIICVGGHN--------------------- 173 (318)
T ss_dssp HHHHHHHHSC-GGGSCEEEEEEECCSSSC-CTHHHHHHHH-HHHCSSCCEEEEEECCSS---------------------
T ss_pred HHHHHHHHhh-hccCCceEEEEecHHHhh-cchHHHHHHh-cccccCCcEEEEEEecCc---------------------
Confidence 3445554432 135679999999999976 6666676665 223334578888765532
Q ss_pred cccccccCCCccccccccCCCchHHHhhh-hccCCcceeecCCcchhHHHHHHHHHHH
Q 003126 769 TALLDLAFPDNFSRLHDRSKETPKALKQI-SRLFPNKVTIQLPQDEALLSDWKQQLER 825 (845)
Q Consensus 769 ~aLldlafpd~~~rl~d~~kd~~k~~e~L-tkLFPNkI~I~pPqDE~~L~~WK~QLEe 825 (845)
|+ |+. ..+..+ +++-+..|.+.|...+.....-++.|+.
T Consensus 174 ----d~--~~~------------~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 174 ----VT--IRE------------QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp ----CC--CHH------------HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ----cc--chh------------hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 22 110 011222 3343567888888888877777777764
No 250
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.33 E-value=44 Score=34.37 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=24.7
Q ss_pred eeeccCCCchHHHHHHHHHHHhhc-----cCcEEEEeccC
Q 003126 495 ILLSGPAGSEIYQETLAKALAKHF-----SARLLIVDSLL 529 (845)
Q Consensus 495 ILLSGPaGsEiYQE~LaKALA~~f-----~AkLLilDs~~ 529 (845)
+||.||+|+ -..+|+++||+.+ ...++-++.++
T Consensus 49 ~ll~Gp~G~--GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 49 LLFYGPPGT--GKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp EEEECSSSS--SHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred EEEECCCCC--CHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 899999994 5678999999985 34566666544
No 251
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=22.82 E-value=55 Score=30.34 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.1
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCc
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSAR 521 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~Ak 521 (845)
..|+|.||+|| -.-+++++||++++..
T Consensus 5 ~~I~i~G~~Gs--GKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGS--GKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTS--SHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCC--CHHHHHHHHHHHHhhc
Confidence 46999999994 5788999999999874
No 252
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=22.74 E-value=1.1e+02 Score=26.10 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=31.9
Q ss_pred EEEEEecCCceEEECCEEcCCCceEEeeCCCEEEEccCCCeeEEE
Q 003126 189 ALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIF 233 (845)
Q Consensus 189 A~LEd~ssnGtV~VNGkkvgKg~kviL~~GDEIvfs~~g~~aYIF 233 (845)
.++.+++..+.+.|+|+ .+.|+.||-|.|-.-..|.|.-
T Consensus 60 e~~~vl~G~~~~~i~~~------~~~l~~Gd~i~i~~~~~H~~~~ 98 (114)
T 2ozj_A 60 TLYLILQGEAVITFDDQ------KIDLVPEDVLMVPAHKIHAIAG 98 (114)
T ss_dssp EEEEEEEEEEEEEETTE------EEEECTTCEEEECTTCCBEEEE
T ss_pred eEEEEEeCEEEEEECCE------EEEecCCCEEEECCCCcEEEEe
Confidence 56788888899999876 5789999999997766777654
No 253
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=22.61 E-value=46 Score=32.32 Aligned_cols=63 Identities=10% Similarity=0.129 Sum_probs=39.7
Q ss_pred CccccccccccccchhhHHHHHHHhhhccccc--cccccccCCCCCCCCceeeccCCC---chHHHHHHHHHHH
Q 003126 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKC--NNFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKALA 515 (845)
Q Consensus 447 ~~i~vSFd~FPYYLSE~TK~~L~saa~vHLk~--~e~skyt~~Lss~s~rILLSGPaG---sEiYQE~LaKALA 515 (845)
.+...+|++++ |++.....|....|..+.. .+...... .++.+|+++|.| |..|.-.+...|.
T Consensus 26 ~~~~~~f~~l~--l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~ 93 (237)
T 3bor_A 26 NEIVDNFDDMN--LKESLLRGIYAYGFEKPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLE 93 (237)
T ss_dssp -CCCCSGGGSC--CCHHHHHHHHHHTCCSCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCC
T ss_pred CCccCChhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHH
Confidence 34556799987 7888888888777765543 12211111 136799999999 5566655555543
No 254
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=22.40 E-value=36 Score=38.33 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.4
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccC
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSA 520 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~A 520 (845)
+.|||.||+|| -..+||||||+.++.
T Consensus 42 ~~VLL~GpPGt--GKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 42 ESVFLLGPPGI--AKSLIARRLKFAFQN 67 (500)
T ss_dssp CEEEEECCSSS--SHHHHHHHGGGGBSS
T ss_pred CeeEeecCchH--HHHHHHHHHHHHHhh
Confidence 47999999994 578999999999854
No 255
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=22.35 E-value=93 Score=31.57 Aligned_cols=90 Identities=18% Similarity=0.347 Sum_probs=54.4
Q ss_pred HHHHHHHhhhcccCCCCEEEEEcchhhhhccCh-----hHHHHHHHHhccCCC-----CEEEEeecccCCCccccCCCCC
Q 003126 689 AINELFEVALNESKSSPLIVFVKDIEKSLTGNN-----DAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGG 758 (845)
Q Consensus 689 lI~sL~EVL~SeS~~~PlILYikDvEK~l~~n~-----e~y~~fq~~LekLsg-----~VvIIGSq~~~d~~KeK~~~g~ 758 (845)
.|..+|+.... ..|-|+++-+++..+..+. .....+...+..|+| .|++|+.-+..
T Consensus 91 ~i~~vf~~a~~---~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p----------- 156 (274)
T 2x8a_A 91 AVRQVFQRAKN---SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRP----------- 156 (274)
T ss_dssp HHHHHHHHHHH---TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCG-----------
T ss_pred HHHHHHHHHHh---cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCCh-----------
Confidence 45666665432 6789999999987543211 111223344444444 45666655531
Q ss_pred cceeccCCcccccccccCCCccccccccCCCchHHHhhhhc--cCCcceeecCCcchhHHHHHHHHHH
Q 003126 759 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISR--LFPNKVTIQLPQDEALLSDWKQQLE 824 (845)
Q Consensus 759 ~~f~kfg~~~~aLldlafpd~~~rl~d~~kd~~k~~e~Ltk--LFPNkI~I~pPqDE~~L~~WK~QLE 824 (845)
.++| +-+.+ -|...|.|.+|..++.+..|+..+.
T Consensus 157 -----------~~LD---------------------~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 157 -----------DIID---------------------PAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp -----------GGSC---------------------HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred -----------hhCC---------------------HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 2233 33444 6888999999999999999987763
No 256
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=22.20 E-value=58 Score=29.98 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhc---cCcEEEEec
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDS 527 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f---~AkLLilDs 527 (845)
...|.|.|+.|+- .-+++|+||..+ |.+.+.+|.
T Consensus 5 g~~i~l~G~~GsG--KST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAG--KTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSS--HHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEECCCCCC--HHHHHHHHHHHHhhCCCcEEEECC
Confidence 3468999999964 578999999998 888888885
No 257
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=22.03 E-value=39 Score=31.67 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=25.8
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
.+|.|.||.|| =--+|+|.||+ +|++.+-.|.
T Consensus 2 ~~i~i~G~~Gs--GKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 2 KRIGLTGNIGC--GKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp CEEEEEECTTS--SHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCc--CHHHHHHHHHH-CCCEEEEccH
Confidence 36999999994 46789999999 8887766554
No 258
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=21.84 E-value=37 Score=38.75 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=44.8
Q ss_pred cccccccccchhhHHHHHHHhhhccccc--cccccccCCCCCCCCceeeccCCC---chHHHHHHHHHHHhhccCcEEEE
Q 003126 451 VSFESFPYYLSDITKNVLIASTYVHLKC--NNFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKALAKHFSARLLIV 525 (845)
Q Consensus 451 vSFd~FPYYLSE~TK~~L~saa~vHLk~--~e~skyt~~Lss~s~rILLSGPaG---sEiYQE~LaKALA~~f~AkLLil 525 (845)
.+|+++|-+|++..+..|-...|-+|.. .+.... +- .++.+|+++|.| |..|...+.+++.+ +.+.|++
T Consensus 1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~---i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~i 74 (702)
T 2p6r_A 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEK---VF-SGKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYV 74 (702)
T ss_dssp CCSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHH---HT-TCSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CchhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHH---Hh-CCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEEE
Confidence 3688999889999999888777766664 222222 11 268899999999 77887777766654 3344443
No 259
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=21.84 E-value=1.4e+02 Score=25.25 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=32.1
Q ss_pred EEEEEecCCceEEECCEEcCCCceEEeeCCCEEEEccCCCeeEEE
Q 003126 189 ALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIF 233 (845)
Q Consensus 189 A~LEd~ssnGtV~VNGkkvgKg~kviL~~GDEIvfs~~g~~aYIF 233 (845)
-++.+++..+++.++| +..+.|..||-|.|-.-..|.|.-
T Consensus 50 E~~~Vl~G~~~~~~~~-----~~~~~l~~Gd~~~ip~~~~H~~~~ 89 (107)
T 2i45_A 50 KVLFAVEGDMAVDFAD-----GGSMTIREGEMAVVPKSVSHRPRS 89 (107)
T ss_dssp EEEEESSSCEEEEETT-----SCEEEECTTEEEEECTTCCEEEEE
T ss_pred EEEEEEeCEEEEEECC-----CcEEEECCCCEEEECCCCcEeeEe
Confidence 5677888888988887 358899999999997766777665
No 260
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=21.82 E-value=61 Score=29.86 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=25.0
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhc---cCcEEEEe
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHF---SARLLIVD 526 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f---~AkLLilD 526 (845)
-|.|.||.|| -.-++++.||++| |.+.+..+
T Consensus 2 ~I~l~G~~Gs--GKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGS--GKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTS--SHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCC--CHHHHHHHHHHHHHHCCCeEEEee
Confidence 4899999995 5778999999999 99887554
No 261
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=21.57 E-value=46 Score=33.78 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=26.6
Q ss_pred CceeeccCCCchHHHHHHHHHHHhhccCcEEEEeccCC
Q 003126 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (845)
Q Consensus 493 ~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs~~l 530 (845)
..|.|.||+|+ ..-+|+|+||++++... +|.-.+
T Consensus 10 ~~i~i~G~~Gs--GKsTla~~la~~lg~~~--~d~g~~ 43 (233)
T 3r20_A 10 LVVAVDGPAGT--GKSSVSRGLARALGARY--LDTGAM 43 (233)
T ss_dssp CEEEEECCTTS--SHHHHHHHHHHHHTCEE--EEHHHH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHHhCCCc--ccCCcH
Confidence 47999999994 67789999999998654 565333
No 262
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=21.39 E-value=52 Score=30.33 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=23.6
Q ss_pred ceeeccCCCchHHHHHHHHHHHhhccCcEE
Q 003126 494 RILLSGPAGSEIYQETLAKALAKHFSARLL 523 (845)
Q Consensus 494 rILLSGPaGsEiYQE~LaKALA~~f~AkLL 523 (845)
.|.|.||+|+ =--+|+|.||++++...+
T Consensus 2 ~I~i~G~~Gs--GKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGA--GKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTS--CHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCcc--CHHHHHHHHHHhcCCcEE
Confidence 5899999994 467899999999998643
No 263
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=21.27 E-value=2.6e+02 Score=27.46 Aligned_cols=26 Identities=8% Similarity=0.095 Sum_probs=19.4
Q ss_pred hhhhccCCcceeecCCcchhHHHHHH
Q 003126 795 KQISRLFPNKVTIQLPQDEALLSDWK 820 (845)
Q Consensus 795 e~LtkLFPNkI~I~pPqDE~~L~~WK 820 (845)
..|..=|+..|.+.+|.+|.....++
T Consensus 187 ~~l~~R~~~~i~~~~~~~~~~~~il~ 212 (310)
T 1ofh_A 187 PELQGRLPIRVELTALSAADFERILT 212 (310)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred HHHHhhCCceEEcCCcCHHHHHHHHH
Confidence 33555577789999999888777777
No 264
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=21.02 E-value=78 Score=36.21 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=44.9
Q ss_pred cccccccccchhhHHHHHHHhhhcccccc--ccccccCCCCCCCCceeeccCCC---chHHHHHHHHHHHhhccCcEEEE
Q 003126 451 VSFESFPYYLSDITKNVLIASTYVHLKCN--NFAKYASDLPTMCPRILLSGPAG---SEIYQETLAKALAKHFSARLLIV 525 (845)
Q Consensus 451 vSFd~FPYYLSE~TK~~L~saa~vHLk~~--e~skyt~~Lss~s~rILLSGPaG---sEiYQE~LaKALA~~f~AkLLil 525 (845)
.+|+++| |++..+..|-.-.|-+|..- +.... -+. .++.+|++||.| |..|...+.+++... +.+.|++
T Consensus 1 ~~f~~l~--l~~~~~~~l~~~g~~~l~~~Q~~~i~~--~~~-~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~~l~i 74 (720)
T 2zj8_A 1 MRVDELR--VDERIKSTLKERGIESFYPPQAEALKS--GIL-EGKNALISIPTASGKTLIAEIAMVHRILTQ-GGKAVYI 74 (720)
T ss_dssp CBGGGCC--SCHHHHHHHHHTTCCBCCHHHHHHHTT--TGG-GTCEEEEECCGGGCHHHHHHHHHHHHHHHH-CSEEEEE
T ss_pred CcHhhcC--CCHHHHHHHHHCCCCCCCHHHHHHHHH--Hhc-CCCcEEEEcCCccHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 3688888 78888888877667666542 22111 011 268899999999 678877777666532 4454444
No 265
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=20.94 E-value=1.2e+02 Score=26.62 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=30.1
Q ss_pred EEEEEecCCceEEECCEEcCCCceEEeeCCCEEEEccCCCeeEEE
Q 003126 189 ALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIF 233 (845)
Q Consensus 189 A~LEd~ssnGtV~VNGkkvgKg~kviL~~GDEIvfs~~g~~aYIF 233 (845)
-++.+++..+++.|++ |..+.|+.||-|.|-.-..|.|.-
T Consensus 51 E~~~Vl~G~~~~~i~~-----g~~~~l~~GD~i~ip~g~~H~~~n 90 (101)
T 1o5u_A 51 ETCYILEGKVEVTTED-----GKKYVIEKGDLVTFPKGLRCRWKV 90 (101)
T ss_dssp EEEEEEEEEEEEEETT-----CCEEEEETTCEEEECTTCEEEEEE
T ss_pred EEEEEEeCEEEEEECC-----CCEEEECCCCEEEECCCCcEEEEe
Confidence 5677788888888872 357899999999997665666543
No 266
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=20.90 E-value=82 Score=33.45 Aligned_cols=27 Identities=7% Similarity=0.063 Sum_probs=22.7
Q ss_pred CCCceeeccCCCchHHHHHHHHHHHhhcc
Q 003126 491 MCPRILLSGPAGSEIYQETLAKALAKHFS 519 (845)
Q Consensus 491 ~s~rILLSGPaGsEiYQE~LaKALA~~f~ 519 (845)
-.+.|||+||+|| ---++||+++++++
T Consensus 44 ~~~~lli~GpPGT--GKT~~v~~v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDS--TKFQLVNDVMDELI 70 (318)
T ss_dssp CCCEEEEECCCSH--HHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCC--CHHHHHHHHHHHHH
Confidence 4578999999994 57789999999984
No 267
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=20.85 E-value=56 Score=26.42 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEECCEEcCCCceEEeeCCCEEEEcc
Q 003126 200 VEVNGNVHPKDSQVVLRGGDELVFSP 225 (845)
Q Consensus 200 V~VNGkkvgKg~kviL~~GDEIvfs~ 225 (845)
+.|||+.++.. .+|..||+|.|-+
T Consensus 39 a~vNg~lvdl~--~~L~~~~~Veivt 62 (73)
T 2kmm_A 39 AKVNHKLVPLS--YVLNSGDQVEVLS 62 (73)
T ss_dssp EEETTEECCTT--CBCCSSSBEEEEE
T ss_pred EEECCEEeCCC--cCcCCCCEEEEEE
Confidence 47899999995 7889999887744
No 268
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=20.67 E-value=1.3e+02 Score=28.23 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=29.9
Q ss_pred eEEEEEecCCceEEECCEEcCCCceEEeeCCCEEEEccCCCeeE
Q 003126 188 GALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSY 231 (845)
Q Consensus 188 vA~LEd~ssnGtV~VNGkkvgKg~kviL~~GDEIvfs~~g~~aY 231 (845)
.-++.+++..++|+|+|+ .+.|..||-|.|-....|.|
T Consensus 127 ~E~~~Vl~G~~~~~~~~~------~~~l~~GD~i~i~~~~~H~~ 164 (192)
T 1y9q_A 127 IEYIHVLEGIMKVFFDEQ------WHELQQGEHIRFFSDQPHGY 164 (192)
T ss_dssp EEEEEEEESCEEEEETTE------EEEECTTCEEEEECSSSEEE
T ss_pred EEEEEEEEeEEEEEECCE------EEEeCCCCEEEEcCCCCeEe
Confidence 467888899999999875 56899999998866555654
No 269
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=20.62 E-value=49 Score=30.19 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=25.0
Q ss_pred CCceeeccCCCchHHHHHHHHHHHhhccCcEEEEec
Q 003126 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (845)
Q Consensus 492 s~rILLSGPaGsEiYQE~LaKALA~~f~AkLLilDs 527 (845)
...|+|.||+|+ =.-+|+|+||..+|..+ +|.
T Consensus 8 g~~i~l~G~~Gs--GKSTl~~~l~~~~g~~~--i~~ 39 (175)
T 1knq_A 8 HHIYVLMGVSGS--GKSAVASEVAHQLHAAF--LDG 39 (175)
T ss_dssp SEEEEEECSTTS--CHHHHHHHHHHHHTCEE--EEG
T ss_pred CcEEEEEcCCCC--CHHHHHHHHHHhhCcEE--EeC
Confidence 356999999994 46789999999988654 454
No 270
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=20.25 E-value=1.5e+02 Score=25.90 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=31.3
Q ss_pred EEEEEecCCceEEECCEEcCCCceEEeeCCCEEEEccCCCeeEE
Q 003126 189 ALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSGKHSYI 232 (845)
Q Consensus 189 A~LEd~ssnGtV~VNGkkvgKg~kviL~~GDEIvfs~~g~~aYI 232 (845)
.++.+++..+.|.|||+ .+.|+.||-|.|-.-..|.|.
T Consensus 58 e~~~Vl~G~~~~~i~~~------~~~l~~Gd~i~ip~~~~H~~~ 95 (114)
T 3fjs_A 58 STIQCLEGEVEIGVDGA------QRRLHQGDLLYLGAGAAHDVN 95 (114)
T ss_dssp EEEEEEESCEEEEETTE------EEEECTTEEEEECTTCCEEEE
T ss_pred EEEEEEECEEEEEECCE------EEEECCCCEEEECCCCcEEEE
Confidence 67889999999999987 589999999999665566653
No 271
>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12
Probab=20.09 E-value=1.7e+02 Score=29.87 Aligned_cols=37 Identities=11% Similarity=0.287 Sum_probs=30.4
Q ss_pred eEEEEEecCCceEEECCEEcCCCceEEeeCCCEEEEccC
Q 003126 188 GALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPS 226 (845)
Q Consensus 188 vA~LEd~ssnGtV~VNGkkvgKg~kviL~~GDEIvfs~~ 226 (845)
-+||.++. |.|.|||..+..|.-+.|.+|++|.+...
T Consensus 182 ~~~~~v~~--G~v~v~g~~l~~gd~~~~~~~~~l~l~a~ 218 (242)
T 1tq5_A 182 RVWIQVVK--GNVTINGVKASTSDGLAIWDEQAISIHAD 218 (242)
T ss_dssp EEEEEEEE--SEEEETTEEEETTCEEEEESCSCEEEEES
T ss_pred EEEEEEcc--CcEEECCEEeCCCCEEEECCCCeEEEEeC
Confidence 36666664 67889999999999999999999988653
No 272
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=20.01 E-value=92 Score=31.57 Aligned_cols=39 Identities=5% Similarity=0.110 Sum_probs=25.3
Q ss_pred CEEEEEcchhhhhc---cChhHHHHHHHHhccCCCCEEEEeecc
Q 003126 705 PLIVFVKDIEKSLT---GNNDAYGALKSKLENLPSNVVVIGSHT 745 (845)
Q Consensus 705 PlILYikDvEK~l~---~n~e~y~~fq~~LekLsg~VvIIGSq~ 745 (845)
+-||+|-|++.+.. ...+++..|....+ .+.++||++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~--~~~~iii~~~~ 140 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYL--LEKQIILASDR 140 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHH--CCCeEEEEecC
Confidence 77999999998442 23455555555443 35567777765
Done!