BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003127
(845 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 284 bits (727), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 241/772 (31%), Positives = 369/772 (47%), Gaps = 85/772 (11%)
Query: 1 MTLMILAVCALVSLVVGIATEGWPKGAHDGLGIVMSILLVVFVTATSDYKQSLQFKDLDR 60
M L I A+ ++ + ATE P+ + LG+V+S VV +T Y Q + +
Sbjct: 77 MLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSA--VVIITGCFSYYQEAKSSKIME 134
Query: 61 EKKKITVQ---VARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLT 117
K + Q V RNG + I+ +++ GD+V + GD++PAD +S ++ SSLT
Sbjct: 135 SFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLT 194
Query: 118 GESEP-------VNVNALNPFLLS--GTKVQNGSCKMLVTTVGMRTQWGKLMATLS---E 165
GESEP N N L ++ T G+ + +V G RT G++ ATL+ E
Sbjct: 195 GESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRI-ATLASGLE 253
Query: 166 GGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEIL 225
GG +TP+ ++ II + +F V F + + +TW L
Sbjct: 254 GG--QTPIAAEIEHFIHIITGVAVFLGVSFFILSLI----------LEYTW--------L 293
Query: 226 EFFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKT 285
E PEGL VT+ L K+M LV++L A ET+GS ++ICSDKT
Sbjct: 294 EAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKT 353
Query: 286 GTLTTNHMTVLKACICEEIKEVDNSKGTPAFGSSIPASASKLLLQSIFNNTGGEVVIGEG 345
GTLT N MTV +I E D ++ S SA+ L L I V
Sbjct: 354 GTLTQNRMTVAHMWSDNQIHEADTTENQSGV-SFDKTSATWLALSRIAGLCNRAVFQANQ 412
Query: 346 NKTEIL-----GTPTETAILEFGLLLGGDFQAERQA-SKIVKVEPFNSVKKQMGVVIELP 399
IL G +E+A+L+ L G + R+ +KIV++ PFNS K + + P
Sbjct: 413 ENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEI-PFNSTNKYQLSIHKNP 471
Query: 400 EGGFRVHC---KGASEIILAACDKFLNSNGEVVPLNEAAVNHLNETIEKFASEALRTLCL 456
H KGA E IL C L +G+ PL+E + + R L
Sbjct: 472 NTAEPRHLLVMKGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERVLGF 530
Query: 457 ACMEIGNEF--------SADAPIPTEGYTCIGIVGIKDPMRPGVKESVAICRSAGITVRM 508
+ + +E + D P + +G++ + DP R V ++V CRSAGI V M
Sbjct: 531 CHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIM 590
Query: 509 VTGDNINTAKAIARECGILTDNGIAIE------------------------GPEFREKSD 544
VTGD+ TAKAIA+ GI+++ +E G + ++ +
Sbjct: 591 VTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTS 650
Query: 545 EELSKLIPKIQ--VMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAM 602
E+L ++ V AR+SP K +V+ + G +VAVTGDG ND+PA +ADIG+AM
Sbjct: 651 EQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQ-GAIVAVTGDGVNDSPASKKADIGVAM 709
Query: 603 GIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSA 662
GIAG++V+K++AD+I+LDDNF++IVT + GR ++ N++K + + LT N+ +
Sbjct: 710 GIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFI 769
Query: 663 CLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFISN 714
PL V +L +++ D + A++LA E D+MKR P K + + N
Sbjct: 770 IANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVN 821
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 281 bits (720), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 247/771 (32%), Positives = 370/771 (47%), Gaps = 87/771 (11%)
Query: 3 LMILAVCALVSLVVGIATEGWPKGAHDGLGIVMSILLVVFVTATSDYKQSLQFKDLDREK 62
L I A+ ++ + ATE P + LG+V+S +++V S Y+++ + +D K
Sbjct: 109 LWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIV-TGCFSYYQEAKSSRIMDSFK 167
Query: 63 KKITVQ--VARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLTGES 120
+ Q V R+G + I+ ++ GD+V + GD++PAD +S ++ SSLTGES
Sbjct: 168 NMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGES 227
Query: 121 EPV----NVNALNPF-----LLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGD-DE 170
EP ++ NP T G+ + +V G RT G++ ATL+ G +
Sbjct: 228 EPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRI-ATLASGLEVGR 286
Query: 171 TPLQVKLNGVATIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXX 230
TP+ +++ II + +F V F L G W LE
Sbjct: 287 TPIAIEIEHFIHIITGVAVFLGV--------SFFILSLILGYSW----------LEAVIF 328
Query: 231 XXXXXXXXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTT 290
PEGL VT+ L K+M LV++L A ET+GS ++ICSDKTGTLT
Sbjct: 329 LIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQ 388
Query: 291 NHMTVLKACICEEIKEVD---NSKGTPAFGSSIPASA----SKLLLQSIFNNTGGEVVIG 343
N MTV +I E D N G +S SA + L +++F V I
Sbjct: 389 NRMTVAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPI- 447
Query: 344 EGNKTEILGTPTETAILEFGLLLGGDFQAERQAS-KIVKVEPFNSVKKQMGVVIE---LP 399
K + G +E+A+L+ L G Q R + KIV++ PFNS K + E
Sbjct: 448 --LKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEI-PFNSTNKYQLSIHENEKSS 504
Query: 400 EGGFRVHCKGASEIILAACDKFLNSNGEVVPLNEAAVNHLNETIEKFASEALRTLCLACM 459
E + + KGA E IL C L NG PL E + R L
Sbjct: 505 ESRYLLVMKGAPERILDRCSTIL-LNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHF 563
Query: 460 EI-------GNEFSADAP-IPTEGYTCIGIVGIKDPMRPGVKESVAICRSAGITVRMVTG 511
+ G F AD P PT +G++ + DP R V ++V CRSAGI V MVTG
Sbjct: 564 ALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTG 623
Query: 512 DNINTAKAIARECGILTDNGIAIE------------------------GPEFREKSDEEL 547
D+ TAKAIA+ GI+++ IE G + ++ S E L
Sbjct: 624 DHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVL 683
Query: 548 SKLIPKIQ--VMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIA 605
++ V AR+SP K +V+ + G +VAVTGDG ND+PAL +ADIG+AMGI+
Sbjct: 684 DDILHYHTEIVFARTSPQQKLIIVEGCQRQ-GAIVAVTGDGVNDSPALKKADIGVAMGIS 742
Query: 606 GTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLT 665
G++V+K++AD+I+LDDNF++IVT + GR ++ N++K + + LT N+ + +
Sbjct: 743 GSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFL--VFII 800
Query: 666 GNAPLT--AVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFISN 714
GN PL V +L +++ D + A++LA E D+MKR P K + + N
Sbjct: 801 GNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVN 851
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 281 bits (719), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 240/772 (31%), Positives = 368/772 (47%), Gaps = 85/772 (11%)
Query: 1 MTLMILAVCALVSLVVGIATEGWPKGAHDGLGIVMSILLVVFVTATSDYKQSLQFKDLDR 60
M L I A+ ++ + ATE P+ + LG+V+S VV +T Y Q + +
Sbjct: 71 MLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSA--VVIITGCFSYYQEAKSSKIME 128
Query: 61 EKKKITVQ---VARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLT 117
K + Q V RNG + I+ +++ GD+V + GD++PAD +S ++ SSLT
Sbjct: 129 SFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLT 188
Query: 118 GESEP-------VNVNALNPFLLS--GTKVQNGSCKMLVTTVGMRTQWGKLMATLS---E 165
GESEP N N L ++ T G+ + +V G RT G++ ATL+ E
Sbjct: 189 GESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRI-ATLASGLE 247
Query: 166 GGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEIL 225
GG +TP+ ++ II + +F V F + + +TW L
Sbjct: 248 GG--QTPIAAEIEHFIHIITGVAVFLGVSFFILSLI----------LEYTW--------L 287
Query: 226 EFFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKT 285
E PEGL VT+ L K+M LV++L A ET+GS ++ICS KT
Sbjct: 288 EAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKT 347
Query: 286 GTLTTNHMTVLKACICEEIKEVDNSKGTPAFGSSIPASASKLLLQSIFNNTGGEVVIGEG 345
GTLT N MTV +I E D ++ S SA+ L L I V
Sbjct: 348 GTLTQNRMTVAHMWSDNQIHEADTTENQSGV-SFDKTSATWLALSRIAGLCNRAVFQANQ 406
Query: 346 NKTEIL-----GTPTETAILEFGLLLGGDFQAERQA-SKIVKVEPFNSVKKQMGVVIELP 399
IL G +E+A+L+ L G + R+ +KIV++ PFNS K + + P
Sbjct: 407 ENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEI-PFNSTNKYQLSIHKNP 465
Query: 400 EGGFRVHC---KGASEIILAACDKFLNSNGEVVPLNEAAVNHLNETIEKFASEALRTLCL 456
H KGA E IL C L +G+ PL+E + + R L
Sbjct: 466 NTAEPRHLLVMKGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERVLGF 524
Query: 457 ACMEIGNEF--------SADAPIPTEGYTCIGIVGIKDPMRPGVKESVAICRSAGITVRM 508
+ + +E + D P + +G++ + DP R V ++V CRSAGI V M
Sbjct: 525 CHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIM 584
Query: 509 VTGDNINTAKAIARECGILTDNGIAIE------------------------GPEFREKSD 544
VTGD+ TAKAIA+ GI+++ +E G + ++ +
Sbjct: 585 VTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTS 644
Query: 545 EELSKLIPKIQ--VMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAM 602
E+L ++ V AR+SP K +V+ + G +VAVTGDG ND+PA +ADIG+AM
Sbjct: 645 EQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQ-GAIVAVTGDGVNDSPASKKADIGVAM 703
Query: 603 GIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSA 662
GIAG++V+K++AD+I+LDDNF++IVT + GR ++ N++K + + LT N+ +
Sbjct: 704 GIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFI 763
Query: 663 CLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFISN 714
PL V +L +++ D + A++LA E D+MKR P K + + N
Sbjct: 764 IANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVN 815
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 281 bits (719), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 227/711 (31%), Positives = 340/711 (47%), Gaps = 92/711 (12%)
Query: 76 RKISIYDLLPGDIVHLCMGDQVPADG--LFVSGFSVLINESSLTGES-------EPV-NV 125
++I D++PGDIV + +GD+VPAD L + ++ +++S LTGES EPV +
Sbjct: 138 QRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDP 197
Query: 126 NALNP----FLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVA 181
A+N L SGT + G +V T G+ T+ GK+ ++ D+TPLQ KL+
Sbjct: 198 RAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFG 257
Query: 182 TIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXXXPE 241
+ K+ V + + + G F + G+ W + +F PE
Sbjct: 258 EQLSKVISLICVAVWLINI-GHFNDPVHGGS-WIRGA------IYYFKIAVALAVAAIPE 309
Query: 242 GLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVLKACIC 301
GLP +T LA ++M A+VR L + ET+G + ICSDKTGTLTTN M+V K I
Sbjct: 310 GLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFII 369
Query: 302 EEIK---------EVDNSKGTP---AFGSSIPASASK----LLLQSI----------FNN 335
+ I V S P + P + + + L +I FN
Sbjct: 370 DRIDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRSGQYDGLVELATICALCNDSSLDFNE 429
Query: 336 TGGEVVIGEGNKTEILGTPTETAILEFGLLLGGDFQAERQASKIVKVEPFNSV-----KK 390
T G E +G TETA+ + R SK+ + NSV KK
Sbjct: 430 TKG--------IYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKK 481
Query: 391 QMGVVIELPEGGFRVHC---------------KGASEIILAACDKFLNSNGEVVPLNEAA 435
+ + V+C KGA E ++ C+ ++ VP+
Sbjct: 482 EFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCN-YVRVGTTRVPMTGPV 540
Query: 436 VNHLNETIEKFAS--EALRTLCLACMEI---GNEFSADAPIPTEGY----TCIGIVGIKD 486
+ I+++ + + LR L LA + E D Y T +G+VG+ D
Sbjct: 541 KEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEYETDLTFVGVVGMLD 600
Query: 487 PMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDN----GIAIEGPEFREK 542
P R V S+ +CR AGI V M+TGDN TA AI R GI +N A G EF +
Sbjct: 601 PPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVADRAYTGREFDDL 660
Query: 543 SDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAM 602
E + + AR P K +V++L++ E+ A+TGDG NDAPAL +A+IG+AM
Sbjct: 661 PLAEQREACRRACCFARVEPTHKSKIVEYLQS-FDEITAMTGDGVNDAPALKKAEIGIAM 719
Query: 603 GIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSA 662
G +GT VAK ++++++ DDNFSTIV + GR++Y N+++F+++ ++ NV ++ F +A
Sbjct: 720 G-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTA 778
Query: 663 CLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFIS 713
L L VQLLWVN++ D L A AL PP+ D+M R P K IS
Sbjct: 779 ALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRTPKEPLIS 829
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 280 bits (716), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 225/704 (31%), Positives = 342/704 (48%), Gaps = 77/704 (10%)
Query: 76 RKISIYDLLPGDIVHLCMGDQVPADG--LFVSGFSVLINESSLTGES-------EPV-NV 125
++I D++PGDIV + +GD+VPAD L + ++ +++S LTGES EPV +
Sbjct: 139 QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDP 198
Query: 126 NALNP----FLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVA 181
A+N L SGT + G +V T G+ T+ GK+ ++ D+TPLQ KL+
Sbjct: 199 RAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFG 258
Query: 182 TIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXXXPE 241
+ K+ V + + + G F + G+ W + +F PE
Sbjct: 259 EQLSKVISLICVAVWLINI-GHFNDPVHGGS-WIRGA------IYYFKIAVALAVAAIPE 310
Query: 242 GLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVLKACIC 301
GLP +T LA ++M A+VR L + ET+G + ICSDKTGTLTTN M+V K I
Sbjct: 311 GLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFII 370
Query: 302 EEIKEVDNSKGTPAFGSSIPASASKLLLQSIFNNTG---GEVVIG-----------EGNK 347
+++ S + S A ++L +G G V + + N+
Sbjct: 371 DKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFNE 430
Query: 348 T----EILGTPTETAILEFGLLLGGDFQAERQASKIVKVEPFNSV-----KKQMGVVIEL 398
T E +G TETA+ + R SK+ + NSV KK+ +
Sbjct: 431 TKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSR 490
Query: 399 PEGGFRVHC----------------KGASEIILAACDKFLNSNGEVVPLNEAAVNHLNET 442
V+C KGA E ++ C+ ++ VP+ +
Sbjct: 491 DRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCN-YVRVGTTRVPMTGPVKEKILSV 549
Query: 443 IEKFAS--EALRTLCLACMEI---GNEFSADAPIPTEGY----TCIGIVGIKDPMRPGVK 493
I+++ + + LR L LA + E D Y T +G+VG+ DP R V
Sbjct: 550 IKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVM 609
Query: 494 ESVAICRSAGITVRMVTGDNINTAKAIARECGILTDN----GIAIEGPEFREKSDEELSK 549
S+ +CR AGI V M+TGDN TA AI R GI +N A G EF + E +
Sbjct: 610 GSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQRE 669
Query: 550 LIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEV 609
+ AR P K +V++L++ E+ A+TGDG NDAPAL +A+IG+AMG +GT V
Sbjct: 670 ACRRACCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAV 727
Query: 610 AKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGNAP 669
AK ++++++ DDNFSTIV + GR++Y N+++F+++ ++ NV ++ F +A L
Sbjct: 728 AKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEA 787
Query: 670 LTAVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFIS 713
L VQLLWVN++ D L A AL PP+ D+M R P K IS
Sbjct: 788 LIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 831
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 280 bits (716), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 225/704 (31%), Positives = 342/704 (48%), Gaps = 77/704 (10%)
Query: 76 RKISIYDLLPGDIVHLCMGDQVPADG--LFVSGFSVLINESSLTGES-------EPV-NV 125
++I D++PGDIV + +GD+VPAD L + ++ +++S LTGES EPV +
Sbjct: 138 QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDP 197
Query: 126 NALNP----FLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVA 181
A+N L SGT + G +V T G+ T+ GK+ ++ D+TPLQ KL+
Sbjct: 198 RAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFG 257
Query: 182 TIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXXXPE 241
+ K+ V + + + G F + G+ W + +F PE
Sbjct: 258 EQLSKVISLICVAVWLINI-GHFNDPVHGGS-WIRGA------IYYFKIAVALAVAAIPE 309
Query: 242 GLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVLKACIC 301
GLP +T LA ++M A+VR L + ET+G + ICSDKTGTLTTN M+V K I
Sbjct: 310 GLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFII 369
Query: 302 EEIKEVDNSKGTPAFGSSIPASASKLLLQSIFNNTG---GEVVIG-----------EGNK 347
+++ S + S A ++L +G G V + + N+
Sbjct: 370 DKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFNE 429
Query: 348 T----EILGTPTETAILEFGLLLGGDFQAERQASKIVKVEPFNSV-----KKQMGVVIEL 398
T E +G TETA+ + R SK+ + NSV KK+ +
Sbjct: 430 TKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSR 489
Query: 399 PEGGFRVHC----------------KGASEIILAACDKFLNSNGEVVPLNEAAVNHLNET 442
V+C KGA E ++ C+ ++ VP+ +
Sbjct: 490 DRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCN-YVRVGTTRVPMTGPVKEKILSV 548
Query: 443 IEKFAS--EALRTLCLACMEI---GNEFSADAPIPTEGY----TCIGIVGIKDPMRPGVK 493
I+++ + + LR L LA + E D Y T +G+VG+ DP R V
Sbjct: 549 IKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVM 608
Query: 494 ESVAICRSAGITVRMVTGDNINTAKAIARECGILTDN----GIAIEGPEFREKSDEELSK 549
S+ +CR AGI V M+TGDN TA AI R GI +N A G EF + E +
Sbjct: 609 GSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQRE 668
Query: 550 LIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEV 609
+ AR P K +V++L++ E+ A+TGDG NDAPAL +A+IG+AMG +GT V
Sbjct: 669 ACRRACCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAV 726
Query: 610 AKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGNAP 669
AK ++++++ DDNFSTIV + GR++Y N+++F+++ ++ NV ++ F +A L
Sbjct: 727 AKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEA 786
Query: 670 LTAVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFIS 713
L VQLLWVN++ D L A AL PP+ D+M R P K IS
Sbjct: 787 LIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 830
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 277 bits (708), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 224/704 (31%), Positives = 341/704 (48%), Gaps = 77/704 (10%)
Query: 76 RKISIYDLLPGDIVHLCMGDQVPADG--LFVSGFSVLINESSLTGES-------EPV-NV 125
++I D++PGDIV + +GD+VPAD L + ++ +++S LTGES EPV +
Sbjct: 138 QRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDP 197
Query: 126 NALNP----FLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVA 181
A+N L SGT + G +V T G+ T+ GK+ ++ D+TPLQ KL+
Sbjct: 198 RAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFG 257
Query: 182 TIIGKIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXXXPE 241
+ K+ V + + + G F + G+ W + +F PE
Sbjct: 258 EQLSKVISLICVAVWLINI-GHFNDPVHGGS-WIRGA------IYYFKIAVALAVAAIPE 309
Query: 242 GLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVLKACIC 301
GLP +T LA ++M A+VR L + ET+G + ICS KTGTLTTN M+V K I
Sbjct: 310 GLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFII 369
Query: 302 EEIKEVDNSKGTPAFGSSIPASASKLLLQSIFNNTG---GEVVIG-----------EGNK 347
+++ S + S A ++L +G G V + + N+
Sbjct: 370 DKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFNE 429
Query: 348 T----EILGTPTETAILEFGLLLGGDFQAERQASKIVKVEPFNSV-----KKQMGVVIEL 398
T E +G TETA+ + R SK+ + NSV KK+ +
Sbjct: 430 TKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSR 489
Query: 399 PEGGFRVHC----------------KGASEIILAACDKFLNSNGEVVPLNEAAVNHLNET 442
V+C KGA E ++ C+ ++ VP+ +
Sbjct: 490 DRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCN-YVRVGTTRVPMTGPVKEKILSV 548
Query: 443 IEKFAS--EALRTLCLACMEI---GNEFSADAPIPTEGY----TCIGIVGIKDPMRPGVK 493
I+++ + + LR L LA + E D Y T +G+VG+ DP R V
Sbjct: 549 IKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVM 608
Query: 494 ESVAICRSAGITVRMVTGDNINTAKAIARECGILTDN----GIAIEGPEFREKSDEELSK 549
S+ +CR AGI V M+TGDN TA AI R GI +N A G EF + E +
Sbjct: 609 GSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQRE 668
Query: 550 LIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEV 609
+ AR P K +V++L++ E+ A+TGDG NDAPAL +A+IG+AMG +GT V
Sbjct: 669 ACRRACCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAV 726
Query: 610 AKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGNAP 669
AK ++++++ DDNFSTIV + GR++Y N+++F+++ ++ NV ++ F +A L
Sbjct: 727 AKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEA 786
Query: 670 LTAVQLLWVNMIMDTLGALALATEPPNGDLMKRSPVGRKGNFIS 713
L VQLLWVN++ D L A AL PP+ D+M R P K IS
Sbjct: 787 LIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 830
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 268 bits (685), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 228/746 (30%), Positives = 354/746 (47%), Gaps = 87/746 (11%)
Query: 29 DGLGIVMSILLVVFVTATSDYKQSLQFKDLDREKKKITVQ---VARNGFRRKISIYDLLP 85
D L + ++++ VV VT Y Q + ++ K + Q V R+G + +I+ L+
Sbjct: 138 DNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVV 197
Query: 86 GDIVHLCMGDQVPADGLFVSGFSVLINESSLTGESEPVN----------VNALNPFLLSG 135
GD+V + GD+VPAD + ++ SSLTGESEP + N S
Sbjct: 198 GDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFS- 256
Query: 136 TKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDE-TPLQVKLNGVATIIGKIGLFFAVV 194
T G+ + LV G RT G++ A+L+ G ++E TP+ +++ II + + F
Sbjct: 257 TMCLEGTAQGLVVNTGDRTIIGRI-ASLASGVENEKTPIAIEIEHFVDIIAGLAILFGAT 315
Query: 195 TFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXXXPEGLPLAVTLSLAFA 254
F V + +T L + FF PEGL VT+ L+
Sbjct: 316 FFIVAMCIGYT---------------FLRAMVFFMAIVVAYV---PEGLLATVTVCLSLT 357
Query: 255 MKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVLKACICEEIKEVDNSKGTP 314
K++ + +V++L A ET+GS + ICSDKTGTLT N MTV I D ++
Sbjct: 358 AKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQS 417
Query: 315 AFGSSIPASASK---------LLLQSIFNNTGGEVVIGEGNKTEILGTPTETAILEFGLL 365
G + S+ L ++ F + V + K ++G +ETA+L+F L
Sbjct: 418 --GQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPV---PKRIVIGDASETALLKFSEL 472
Query: 366 LGGDFQAERQASKIVKVEPFNSVKK-QMGV-VIELPEGGFRVHC-KGASEIILAACDKFL 422
G+ R+ V PFNS K Q+ + +E P V KGA E +L C L
Sbjct: 473 TLGNAMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSIL 532
Query: 423 NSNGEVVPLNEAAVNHLNETIEKFASEALRTLCLACMEI-------GNEFSADA-PIPTE 474
G+ +PL+E R L + + G F +A PT
Sbjct: 533 -IKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTS 591
Query: 475 GYTCIGIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAI 534
G + G+V + DP R V ++V CR+AGI V MVTGD+ TAKAIA GI+++ +
Sbjct: 592 GLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGSETV 651
Query: 535 EGPEFREK---------------------SDEELSKLIPKIQ-----VMARSSPMDKHTL 568
E R + D + S+L+ ++ V AR+SP K +
Sbjct: 652 EDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVI 711
Query: 569 VKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVT 628
V+ + LG +VAVTGDG ND+PAL +ADIG+AMGIAG++ AK +AD+I+LDDNF++IVT
Sbjct: 712 VESCQR-LGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVT 770
Query: 629 VAKWGRSVYINIQKFVQFQLTVNVVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGAL 688
+ GR ++ N++K + + LT N+ L ++ PL + +L++ + D ++
Sbjct: 771 GVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSV 830
Query: 689 ALATEPPNGDLMKRSPVGRKGNFISN 714
+LA E D+M P K + + N
Sbjct: 831 SLAYEKAESDIMHLRPRNPKRDRLVN 856
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 162 bits (409), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 157/645 (24%), Positives = 283/645 (43%), Gaps = 111/645 (17%)
Query: 31 LGIVMSILLVVFVTATSDYKQSLQFKDLDREKKK---ITVQVARNGFRRKISIYDLLPGD 87
G++ +LL+ A + Q Q + E KK + V R+G ++I +++PGD
Sbjct: 144 FGVICGLLLL---NAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPGD 200
Query: 88 IVHLCMGDQVPADGLFVSGFSVL-INESSLTGESEPVNVNALNPFLLSGTKVQNGSCKML 146
I+ + G +PADG V+ + L +++S+LTGES V+ + + S + V+ G ++
Sbjct: 201 ILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFAS-SAVKRGEAFVV 259
Query: 147 VTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVMVQGLFTR 206
+T G T G+ A ++ LNG+ TI+ L + T ++ F R
Sbjct: 260 ITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTIL----LILVIFTLLIVWVSSFYR 315
Query: 207 KLQEGTHWTWSGDDALEILEFFXXXXXXXXXXXPEGLPLAVTLSLAFAMKKMMNDKALVR 266
+ ++ILEF P GLP VT ++A + KA+V+
Sbjct: 316 S-----------NPIVQILEF---TLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQ 361
Query: 267 HLAACETMGSATSICSDKTGTLTTNHMTV---------------LKACICEEIKEVDNSK 311
L+A E++ +CSDKTGTLT N +++ L AC+ K+ K
Sbjct: 362 KLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVAGVDPEDLMLTACLAASRKK----K 417
Query: 312 GTPAFGSSIPASASKLLLQSIFNNTGGEVVIGEGNKTEILGTPTETAILEFGLLLGGDFQ 371
G A K L+S+ + V+ +
Sbjct: 418 GIDAI--------DKAFLKSLKYYPRAKSVLSK--------------------------- 442
Query: 372 AERQASKIVKVEPFNSVKKQMGVVIELPEGGFRVHC-KGASEIILAACDKFLNSNGEVVP 430
K+++ PF+ V K++ V+E P+G R+ C KGA +L + E P
Sbjct: 443 -----YKVLQFHPFDPVSKKVVAVVESPQGE-RITCVKGAPLFVLKTVE-------EDHP 489
Query: 431 LNEAAVNHLNETIEKFASEALRTLCLACMEIGNEFSADAPIPTEG-YTCIGIVGIKDPMR 489
+ E + +FA+ R+L +A EG + +GI+ DP R
Sbjct: 490 IPEEVDQAYKNKVAEFATRGFRSLGVARKR------------GEGSWEILGIMPCMDPPR 537
Query: 490 PGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTD--NGIAIEGPEFREKSDEEL 547
++V ++ G++++M+TGD + A+ +R+ G+ T+ N + + E+
Sbjct: 538 HDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEV 597
Query: 548 SKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGT 607
+ A P K+ +V+ L+ G +VA+TGDG NDAP+L +AD G+A+ +
Sbjct: 598 YDFVEAADGFAEVFPQHKYNVVEILQQR-GYLVAMTGDGVNDAPSLKKADTGIAVE-GSS 655
Query: 608 EVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNV 652
+ A+ +AD++ L I+ K R ++ + +V +++ +++
Sbjct: 656 DAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSI 700
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 149/624 (23%), Positives = 271/624 (43%), Gaps = 80/624 (12%)
Query: 68 QVARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLTGESEPVNVNA 127
+V R+G + L+PGDIV + +GD +PAD + G + +++S+LTGES PV +
Sbjct: 133 KVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHP 192
Query: 128 LNPFLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKI 187
+ SG+ + G + +V G+ T +GK + D T V T IG
Sbjct: 193 GQE-VFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-----DSTNQVGHFQKVLTAIGNF 246
Query: 188 ---GLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXXXPEGLP 244
+ +V +++ + RK ++G D+ L +L P +P
Sbjct: 247 CICSIAIGMVIEIIVMYPIQRRKYRDGI------DNLLVLL----------IGGIPIAMP 290
Query: 245 LAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNHMTVLKACICEEI 304
+++++A ++ A+ + + A E M +CSDKTGTLT N ++V K +
Sbjct: 291 TVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFC 350
Query: 305 KEVDNSKGTPAFGSSIPASASKLLLQSIFNNTGGEVVIGEGNKTEILGTPTETAILEFGL 364
K V+ + LL ++ + + I + +L P E
Sbjct: 351 KGVEKDQ--------------VLLFAAMASRVENQDAI-DAAMVGMLADPKEA------- 388
Query: 365 LLGGDFQAERQASKIVKVEPFNSVKKQMGVVIELPEGGFRVHCKGASEIILAACDKFLNS 424
R + V PFN V K+ + G + KGA E IL +
Sbjct: 389 ---------RAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILELAKASNDL 439
Query: 425 NGEVVPLNEAAVNHLNETIEKFASEALRTLCLACMEIGNEFSADAPIPTEGYTCIGIVGI 484
+ +V+ + I+K+A LR+L +A + + P E +G++ +
Sbjct: 440 SKKVLSI-----------IDKYAERGLRSLAVARQVVPEKTKESPGAPWE---FVGLLPL 485
Query: 485 KDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEFREKSD 544
DP R E++ + G+ V+M+TGD + K R G+ T+ + D
Sbjct: 486 FDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTN--MYPSSALLGTHKD 543
Query: 545 EELS-----KLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 599
L+ +LI K A P K+ +VK L+ +V +TGDG NDAPAL +ADIG
Sbjct: 544 ANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQER-KHIVGMTGDGVNDAPALKKADIG 602
Query: 600 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNF 659
+A+ A T+ A+ ++D+++ + S I++ R+++ ++ + + +++ + ++ F
Sbjct: 603 IAVADA-TDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSIT-IRIVFGF 660
Query: 660 SSACLTGNAPLTAVQLLWVNMIMD 683
L +A +L + ++ D
Sbjct: 661 MLIALIWEFDFSAFMVLIIAILND 684
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 30/174 (17%)
Query: 480 GIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEF 539
GI+ + D ++ K +V + GI V M+TGDN +A+AI+RE +
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDL----------- 498
Query: 540 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 599
V+A P K VK L+ EVVA GDG NDAPAL +AD+G
Sbjct: 499 ----------------VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLG 540
Query: 600 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVV 653
+A+G +G++VA ES D++++ D+ +V + R I++ + + L NV+
Sbjct: 541 IAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVI 593
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 19/224 (8%)
Query: 66 TVQVARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLTGESEPVNV 125
T V R+G + + ++ GDIV + G+++P DG+ V G S ++ES ++GE PV +
Sbjct: 134 TAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPV-L 191
Query: 126 NALNPFLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIG 185
+ + T G K+ T VG T +++ + + + P+Q + V
Sbjct: 192 KSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFI 251
Query: 186 KIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXXXPEGLPL 245
L A+ F +W + L L F P L
Sbjct: 252 PTVLLVAISAF---------------IYWYFIAHAPL--LFAFTTLIAVLVVACPCAFGL 294
Query: 246 AVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLT 289
A +L M K L+++ A E T++ DKTGTLT
Sbjct: 295 ATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLT 338
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 30/174 (17%)
Query: 480 GIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEF 539
GI+ + D ++ K +V + GI V M+TGDN +A+AI+RE +
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDL----------- 576
Query: 540 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 599
V+A P K VK L+ EVVA GDG NDAPAL +AD+G
Sbjct: 577 ----------------VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLG 618
Query: 600 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVV 653
+A+G +G++VA ES D++++ D+ +V + R I++ + + L NV+
Sbjct: 619 IAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVI 671
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 19/224 (8%)
Query: 66 TVQVARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLTGESEPVNV 125
T V R+G + + ++ GDIV + G+++P DG+ V G S ++ES ++GE PV +
Sbjct: 212 TAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPV-L 269
Query: 126 NALNPFLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIG 185
+ + T G K+ T VG T +++ + + + P+Q + V
Sbjct: 270 KSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFI 329
Query: 186 KIGLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEFFXXXXXXXXXXXPEGLPL 245
L A+ F +W + L L F P L
Sbjct: 330 PTVLLVAISAF---------------IYWYFIAHAPL--LFAFTTLIAVLVVACPCAFGL 372
Query: 246 AVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLT 289
A +L M K L+++ A E T++ DKTGTLT
Sbjct: 373 ATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLT 416
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 29/177 (16%)
Query: 479 IGIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPE 538
+ ++ ++DP++ E++ + +GI + M+TGD+ TA+A+A GI
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIK----------- 594
Query: 539 FREKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADI 598
+V+A P DK +V L+ G +VA+ GDG NDAPAL +ADI
Sbjct: 595 ----------------KVVAEIMPEDKSRIVSELKDK-GLIVAMAGDGVNDAPALAKADI 637
Query: 599 GLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVAL 655
G+AMG GT+VA ESA V +L + I + S NI++ + F NV+ +
Sbjct: 638 GIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNVLGV 693
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 20/226 (8%)
Query: 68 QVARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLTGESEPVNVNA 127
++ +G ++S+ ++ GD++ + G+++P DG G S ++ES +TGE PV A
Sbjct: 229 RIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRS-FVDESMVTGEPIPVAKEA 287
Query: 128 LNPFLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKI 187
+ ++ T Q GS M VG T +++ +S+ P+Q + V+
Sbjct: 288 -SAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPA 346
Query: 188 GLFFAVVTFAVMVQGLFTRKLQEGTHWTWSGDDALEILEF-FXXXXXXXXXXXPEGLPLA 246
+ AV++F V W G L + P L LA
Sbjct: 347 VILVAVLSFIV---------------WALLGPQP--ALSYGLIAAVSVLIIACPCALGLA 389
Query: 247 VTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTLTTNH 292
+S+ + K L+++ A E M ++ DKTGTLT H
Sbjct: 390 TPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGH 435
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 30/162 (18%)
Query: 480 GIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEF 539
GI+ + D ++ K +V + GI V M+TGDN +A+AI+RE +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDL----------- 204
Query: 540 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 599
V+A P K VK L+ EVVA GDG NDAPAL +AD+G
Sbjct: 205 ----------------VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLG 246
Query: 600 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQ 641
+A+G +G++VA ES D++++ D+ +V + R I+
Sbjct: 247 IAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 30/162 (18%)
Query: 480 GIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEF 539
GI+ + D ++ K +V + GI V M+TGDN +A+AI+RE +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDL----------- 204
Query: 540 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 599
V+A P K VK L+ EVVA GDG NDAPAL +AD+G
Sbjct: 205 ----------------VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLG 246
Query: 600 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQ 641
+A+G +G++VA ES D++++ D+ +V + R I+
Sbjct: 247 IAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 87/162 (53%), Gaps = 30/162 (18%)
Query: 480 GIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEF 539
G++ + D +RP +E+++ ++ GI M+TGDN AK +A E G+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL------------- 183
Query: 540 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 599
D+ ++++P +K VK ++ V A+ GDG NDAPAL +AD+G
Sbjct: 184 ----DDYFAEVLPH----------EKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVG 227
Query: 600 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQ 641
+A+G AGT+VA E+AD++++ ++ + + + R Y ++
Sbjct: 228 IAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 30/158 (18%)
Query: 480 GIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEF 539
G++ + D +RP +E+++ ++ GI M+TGDN AK +A E G+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL------------- 183
Query: 540 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 599
D+ ++++P +K VK ++ V A+ GDG NDAPAL +AD+G
Sbjct: 184 ----DDYFAEVLPH----------EKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVG 227
Query: 600 LAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVY 637
+A+G AGT+VA E+AD++++ ++ + + + R Y
Sbjct: 228 IAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTY 264
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 38/161 (23%)
Query: 480 GIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEF 539
GI+ + D ++ K +V + GI V +TGDN +A+AI+RE +
Sbjct: 136 GIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNLDL----------- 184
Query: 540 REKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIG 599
V+A P K VK L+ EVVA GDG NDAPAL +AD+G
Sbjct: 185 ----------------VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLG 226
Query: 600 LAMGIAGTEVAKESADVIILDDNFSTIV--------TVAKW 632
+A+G +G++VA ES D++++ D+ +V T +KW
Sbjct: 227 IAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTXSKW 266
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 42/145 (28%)
Query: 484 IKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEFREKS 543
+K+ +P V+E + GI V +TGDN +A+AI+RE +
Sbjct: 23 LKESAKPAVQE----LKRXGIKVGXITGDNWRSAEAISRELNLDL--------------- 63
Query: 544 DEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMG 603
V+A P K VK L+ EVVA GDG NDAPAL +AD+G+A+G
Sbjct: 64 ------------VIAEVLPHQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLGIAVG 109
Query: 604 IAGTEVAKESADVIILDDNFSTIVT 628
S D++++ D+ +V
Sbjct: 110 ---------SGDIVLIRDDLRDVVA 125
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 359 ILEFGLLLGGDFQAERQ-ASKIVKVE--PFNSVKKQMGVVIELPEGGFRVHCKGASEIIL 415
+L+ +L G D ++ R AS+ K++ PF+ +++M VV+ ++ CKGA + IL
Sbjct: 35 LLDTAVLEGTDEESARSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLVCKGALQEIL 94
Query: 416 AACDKFLNSNGEVVPLNEAAVNHLNETIEKFASEALRTLCLA 457
C + + NGE+VPL++ + + + + LR + +A
Sbjct: 95 NVCSQ-VRHNGEIVPLDDIMLRKIKRVTDTLNRQGLRVVAVA 135
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 29/153 (18%)
Query: 479 IGIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPE 538
I I D RP +K+ + ++ G+ + +++GD + K +++E I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------ 175
Query: 539 FREKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADI 598
E S L SP DK +++ L+ G V + GDG NDA AL AD+
Sbjct: 176 -----QEYYSNL----------SPEDKVRIIEKLKQN-GNKVLMIGDGVNDAAALALADV 219
Query: 599 GLAMGIAGTEVAKESADVIILDDNFSTIVTVAK 631
+AMG G +++K AD+I++ ++ T++ + K
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 29/153 (18%)
Query: 479 IGIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPE 538
I I D RP +K+ + ++ G+ + +++GD + K +++E I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------ 175
Query: 539 FREKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADI 598
E S L SP DK +++ L+ G V + GDG NDA AL AD+
Sbjct: 176 -----QEYYSNL----------SPEDKVRIIEKLKQN-GNKVLMIGDGVNDAAALALADV 219
Query: 599 GLAMGIAGTEVAKESADVIILDDNFSTIVTVAK 631
+AMG G +++K AD+I++ ++ T++ + K
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 29/153 (18%)
Query: 479 IGIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPE 538
I I D RP +K+ + ++ G+ + +++GD + K +++E I
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI------------ 175
Query: 539 FREKSDEELSKLIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADI 598
E S L SP DK +++ L+ G V + GDG NDA AL AD+
Sbjct: 176 -----QEYYSNL----------SPEDKVRIIEKLKQN-GNKVLMIGDGVNDAAALALADV 219
Query: 599 GLAMGIAGTEVAKESADVIILDDNFSTIVTVAK 631
+AMG G +++K AD+I++ ++ T++ + K
Sbjct: 220 SVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 86 GDIVHLCMGDQVPADGLFVSGFSVLINESSLTGESEPVNVNALNP--FLLSGTKVQNGSC 143
GDI+ + G + P DG + G S +++ES +TGE+ PV A P +++G+ QNGS
Sbjct: 45 GDIIKVVPGGKFPVDGRVIEGHS-MVDESLITGEAMPV---AKKPGSTVIAGSINQNGSL 100
Query: 144 KMLVTTVGMRTQWGKLMATLSE 165
+ T VG T +++ + E
Sbjct: 101 LICATHVGADTTLSQIVKLVEE 122
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 66 TVQVARNGFRRKISIYDLLPGDIVHLCMGDQVPADGLFVSGFSVLINESSLTGESEPVNV 125
T V R+G + + ++ GDIV + G+++P DG+ V G S ++ES ++GE PV +
Sbjct: 13 TAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPV-L 70
Query: 126 NALNPFLLSGTKVQNGSCKMLVTTVGMRTQWGKLMATLSE 165
+ + T G K+ T VG T +++ + +
Sbjct: 71 KSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVED 110
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 59/149 (39%), Gaps = 36/149 (24%)
Query: 397 ELPEGGFRVHCKGASEIILAACD-KFLNSNGEVVPLNE---------AAVNHLNETIEKF 446
+LP+G FR KG E+ + A K S +++P+ + LN K
Sbjct: 28 QLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKL 87
Query: 447 ASEALRT-----LC-----------LACM--EIGNEFSADAPIPTEGYTCIGIVGIKDPM 488
AL T LC L CM EIG + D I + + I I PM
Sbjct: 88 YRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIA----PM 143
Query: 489 RPGVKESVAI----CRSAGITVRMVTGDN 513
R V+E V + GITV +TGD+
Sbjct: 144 RSLVQEMVGSFGKRLATYGITVAELTGDH 172
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 59/149 (39%), Gaps = 36/149 (24%)
Query: 397 ELPEGGFRVHCKGASEIILAACD-KFLNSNGEVVPLNE---------AAVNHLNETIEKF 446
+LP+G FR KG E+ + A K S +++P+ + LN K
Sbjct: 28 QLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKL 87
Query: 447 ASEALRT-----LC-----------LACM--EIGNEFSADAPIPTEGYTCIGIVGIKDPM 488
AL T LC L CM EIG + D I + + I I PM
Sbjct: 88 YRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIA----PM 143
Query: 489 RPGVKESVAI----CRSAGITVRMVTGDN 513
R V+E V + GITV +TGD+
Sbjct: 144 RSLVQEMVGSFGKRLATYGITVAELTGDH 172
>pdb|1NF2|A Chain A, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|B Chain B, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|C Chain C, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
Length = 268
Score = 35.0 bits (79), Expect = 0.18, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 532 IAIEGPEFREKSDEELSKLIPKIQVMARSSP---------MDKHTLVKHLRTTLG---EV 579
+ I+ PE ++ E LS+ + + +S P +DK ++ LR + E
Sbjct: 149 LLIDTPERLDELKEILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEE 208
Query: 580 VAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTV 629
+ V GD ND EA + +AM A E KE++D++ L +N S + V
Sbjct: 209 IVVFGDNENDLFMFEEAGLRVAMENA-IEKVKEASDIVTLTNNDSGVSYV 257
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 568 LVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDN 622
L++++ T EV+A+ GDG ND + A +G+AMG A E K++AD I L ++
Sbjct: 205 LLENIGMTREEVIAI-GDGYNDLSMIKFAGMGVAMGNA-QEPVKKAADYITLTND 257
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 550 LIPKIQVMARSSPMDKHTLVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEV 609
L + V S + R + E++A GDG ND P L A IG+AMG A +V
Sbjct: 184 LFADVNVAGTSKATGLSLFADYYRVKVSEIMA-CGDGGNDIPMLKAAGIGVAMGNASEKV 242
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 568 LVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVI 617
+++H L E ++ GDG ND L A IG+AMG A +V K +AD +
Sbjct: 195 IIRHFGIKLEETMSF-GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYV 242
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 568 LVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVI 617
+++H L E ++ GDG ND L A IG+AMG A +V K +AD +
Sbjct: 195 IIRHFGIKLEETMSF-GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYV 242
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 240 PEGLPLAVTLSLAFAMKKMMNDKALVRHL 268
PEGLP +T LA ++M A+VR L
Sbjct: 20 PEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|3N6B|A Chain A, Structure Of Endothelial Nitric Oxide Synthase H373s
Single Mutant Heme Domain Complexed With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-
2,1-Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N6B|B Chain B, Structure Of Endothelial Nitric Oxide Synthase H373s
Single Mutant Heme Domain Complexed With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-
2,1-Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N6C|A Chain A, Structure Of Endothelial Nitric Oxide Synthase H373s
Single Mutant Heme Domain Complexed With
4-(2-(6-(2-(6-Amino-4-Methylpyridin-2-Yl)
Ethyl)pyridin-2-Yl)ethyl)-6-Methylpyridin-2-Amine
pdb|3N6C|B Chain B, Structure Of Endothelial Nitric Oxide Synthase H373s
Single Mutant Heme Domain Complexed With
4-(2-(6-(2-(6-Amino-4-Methylpyridin-2-Yl)
Ethyl)pyridin-2-Yl)ethyl)-6-Methylpyridin-2-Amine
pdb|3N6D|A Chain A, Structure Of Endothelial Nitric Oxide Synthase H373s
Single Mutant Heme Domain Complexed With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)
Bis(Ethane-2,1-Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N6D|B Chain B, Structure Of Endothelial Nitric Oxide Synthase H373s
Single Mutant Heme Domain Complexed With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)
Bis(Ethane-2,1-Diyl))bis(4-Methylpyridin-2-Amine)
Length = 444
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 440 NETIEKFASEALRTLCLAC-----MEIGN-EFSADAPIPTEGY---TCIGIVGIKDPMRP 490
+ T+E FA+ LR L +EIG EFSA P G+ T IG + DP R
Sbjct: 281 HPTLEWFAALGLRWYALPAVSNMLLEIGGLEFSA---APFSGWYMSTEIGTRNLCDPSRY 337
Query: 491 GVKESVAIC 499
+ E VA+C
Sbjct: 338 NILEDVAVC 346
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 479 IGIVGIKDPMRPGVKESVAICRSAGITVRMVTGDNINTAKAI 520
I +V P+ PGV+E+VA+C+ G+ V + + ++ + +
Sbjct: 86 ISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHXLEKV 127
>pdb|3BBO|E Chain E, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 269
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 336 TGGEVVIGEGNKTEILGTPTETAILEFGLLLGGDFQAERQASKIVKVEPFNSVKKQMGVV 395
+G EV I GN + P TAI + LG Q R A + K+ K+
Sbjct: 114 SGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKL----IAKEGKSAT 169
Query: 396 IELPEGGFRVHCKGASEII 414
++LP G R+ K S +
Sbjct: 170 LKLPSGEVRLISKNCSATV 188
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 29/148 (19%)
Query: 488 MRPGVKESVAICRSAGITVRMVTGDNINTAKAIARECGILTDNGIAIEGPEFREKSDEEL 547
+ PGV E + +AG + M T A+AIA G+ D L
Sbjct: 105 LYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGL-----------------DTRL 147
Query: 548 SKLIPKIQVMARSSPMDKHTLVKHLRTTLG---EVVAVTGDGTNDAPALHEAD---IGLA 601
+ +I + R P L H+ LG E V GDG DA A IG++
Sbjct: 148 T-VIAGDDSVERGKPHPDMAL--HVARGLGIPPERCVVIGDGVPDAEMGRAAGMTVIGVS 204
Query: 602 MGIAG-TEVAKESADVIILDDNFSTIVT 628
G++G E+ + AD ++ D+F VT
Sbjct: 205 YGVSGPDELMRAGADTVV--DSFPAAVT 230
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 568 LVKHLRTTLGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDN 622
L++++ T EV+A+ GDG ND + A G+A G A E K++AD I L ++
Sbjct: 205 LLENIGXTREEVIAI-GDGYNDLSXIKFAGXGVAXGNA-QEPVKKAADYITLTND 257
>pdb|3I04|A Chain A, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|B Chain B, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|C Chain C, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|D Chain D, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
Length = 673
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 732 WYLQTRGKAVFRLDGPDPDLILNTLIFN-----TFVFCQVFNEISSREMEKINVFKGILK 786
W L+ K + + +P +LN I + + C N ++ + V K +LK
Sbjct: 430 WSLEALTKLLATQNAQNPIRVLNQAILDGELAGVALICGCNNLKGFQDNSHLTVMKELLK 489
Query: 787 NYVFVAVLTCTVLFQIIIIELLGTFANTTPLNLQQWFVSILLGFL 831
N VFV C+ + G P N++ + L GFL
Sbjct: 490 NNVFVVATGCSA-------QAAGKLGLLDPANVETYCGDGLKGFL 527
>pdb|1MJG|A Chain A, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|B Chain B, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|C Chain C, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|D Chain D, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1OAO|A Chain A, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|1OAO|B Chain B, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|2Z8Y|A Chain A, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|B Chain B, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|C Chain C, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|D Chain D, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|3I01|A Chain A, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|B Chain B, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|C Chain C, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|D Chain D, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster
Length = 674
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 732 WYLQTRGKAVFRLDGPDPDLILNTLIFN-----TFVFCQVFNEISSREMEKINVFKGILK 786
W L+ K + + +P +LN I + + C N ++ + V K +LK
Sbjct: 431 WSLEALTKLLATQNAQNPIRVLNQAILDGELAGVALICGCNNLKGFQDNSHLTVMKELLK 490
Query: 787 NYVFVAVLTCTVLFQIIIIELLGTFANTTPLNLQQWFVSILLGFL 831
N VFV C+ + G P N++ + L GFL
Sbjct: 491 NNVFVVATGCSA-------QAAGKLGLLDPANVETYCGDGLKGFL 528
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,467,736
Number of Sequences: 62578
Number of extensions: 971524
Number of successful extensions: 2328
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2210
Number of HSP's gapped (non-prelim): 66
length of query: 845
length of database: 14,973,337
effective HSP length: 107
effective length of query: 738
effective length of database: 8,277,491
effective search space: 6108788358
effective search space used: 6108788358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)