Query 003128
Match_columns 845
No_of_seqs 424 out of 2302
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 17:33:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2039 Transcriptional coacti 100.0 1.3E-67 2.9E-72 635.7 36.7 703 10-837 3-723 (875)
2 smart00318 SNc Staphylococcal 99.9 1E-24 2.2E-29 211.5 18.4 131 11-150 2-137 (138)
3 PRK06518 hypothetical protein; 99.9 3.7E-24 8.1E-29 214.2 17.9 138 5-152 17-157 (177)
4 cd00175 SNc Staphylococcal nuc 99.9 4.1E-24 8.8E-29 204.9 16.5 123 18-150 1-128 (129)
5 KOG2039 Transcriptional coacti 99.9 2.7E-24 5.9E-29 260.7 18.6 534 9-746 318-866 (875)
6 smart00318 SNc Staphylococcal 99.9 8.5E-24 1.8E-28 205.1 18.1 138 186-364 1-138 (138)
7 cd00175 SNc Staphylococcal nuc 99.9 6.5E-23 1.4E-27 196.5 16.2 129 194-364 1-129 (129)
8 COG1525 Micrococcal nuclease ( 99.8 2.5E-20 5.3E-25 191.2 15.0 128 12-152 42-172 (192)
9 PF00565 SNase: Staphylococcal 99.8 3E-20 6.5E-25 172.0 10.9 107 42-151 1-108 (108)
10 PRK06518 hypothetical protein; 99.8 6.8E-19 1.5E-23 176.4 16.6 126 614-743 20-156 (177)
11 PF00565 SNase: Staphylococcal 99.8 2.2E-18 4.9E-23 159.4 11.1 106 213-364 1-108 (108)
12 COG1525 Micrococcal nuclease ( 99.7 8.3E-17 1.8E-21 165.1 14.3 129 188-365 42-172 (192)
13 PF00567 TUDOR: Tudor domain; 98.7 9.6E-08 2.1E-12 89.1 10.6 74 760-834 2-76 (121)
14 cd04508 TUDOR Tudor domains ar 98.0 8.7E-06 1.9E-10 64.2 4.5 26 813-838 1-26 (48)
15 smart00333 TUDOR Tudor domain. 97.7 4.1E-05 8.9E-10 62.6 4.9 28 809-837 2-29 (57)
16 smart00743 Agenet Tudor-like d 96.6 0.0031 6.8E-08 52.4 4.9 32 809-840 2-33 (61)
17 PF06003 SMN: Survival motor n 94.6 0.034 7.4E-07 60.1 4.2 31 808-838 67-97 (264)
18 PF11717 Tudor-knot: RNA bindi 83.6 1.4 3E-05 36.0 3.5 26 811-837 2-27 (55)
19 KOG3026 Splicing factor SPF30 81.6 1.2 2.6E-05 46.5 3.0 28 809-836 90-117 (262)
20 PF09465 LBR_tudor: Lamin-B re 78.7 3.3 7.2E-05 33.8 4.0 33 809-841 5-37 (55)
21 PF05641 Agenet: Agenet domain 66.3 8.3 0.00018 32.8 3.9 29 810-838 1-32 (68)
22 KOG3038 Histone acetyltransfer 57.9 30 0.00064 37.1 6.9 28 808-835 197-224 (264)
23 KOG2279 Kinase anchor protein 57.4 27 0.00059 41.1 7.0 82 758-840 401-486 (608)
24 PF15057 DUF4537: Domain of un 52.6 25 0.00053 33.8 5.0 69 760-833 11-80 (124)
25 PF07039 DUF1325: SGF29 tudor- 47.4 22 0.00048 34.4 3.8 68 761-834 17-96 (130)
26 COG2134 Cdh CDP-diacylglycerol 35.7 48 0.001 34.4 4.2 52 41-95 80-136 (252)
27 PLN00104 MYST -like histone ac 29.9 75 0.0016 37.1 5.0 30 808-837 52-81 (450)
28 KOG4327 mRNA splicing protein 28.3 46 0.001 34.2 2.6 30 807-836 65-94 (218)
29 KOG3038 Histone acetyltransfer 26.1 1E+02 0.0023 33.1 4.9 33 807-839 125-160 (264)
30 smart00743 Agenet Tudor-like d 24.8 1.2E+02 0.0027 24.7 4.2 40 377-419 17-56 (61)
31 PRK12442 translation initiatio 24.2 1.4E+02 0.003 27.0 4.5 31 187-218 8-38 (87)
32 PRK05471 CDP-diacylglycerol py 24.2 64 0.0014 34.7 2.9 52 42-96 81-137 (252)
33 TIGR00008 infA translation ini 23.4 1.4E+02 0.0031 25.6 4.4 31 187-218 6-36 (68)
34 COG0361 InfA Translation initi 22.8 85 0.0018 27.5 2.9 60 763-832 8-68 (75)
No 1
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=100.00 E-value=1.3e-67 Score=635.70 Aligned_cols=703 Identities=45% Similarity=0.729 Sum_probs=597.9
Q ss_pred CeEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCCC-CCCChhHHHHHHHHHhHcCCCeEEEEEcccc
Q 003128 10 GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRG-GLDEPFAWDSREFLRKLCIGKEVTFRVDYAV 88 (845)
Q Consensus 10 ~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~~~-~~~ep~a~eAre~Lr~ll~Gk~V~v~~~~~~ 88 (845)
....+.|++|.|||.+.++.. +..+++++.+++|+.+.+|++.+++ +-++||+|++++|+|++++|+.|.|..++-.
T Consensus 3 ~~~~~~v~~v~s~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~p~~~~~~~~~~~~~~~k~~~v~~~~~~ 80 (875)
T KOG2039|consen 3 QRLVGYVKAVLSGDAFVIRGS--PRAGPPPEFQINLSNVKAPNEARRDKGVDEPFAWESREFLRKSEIGKEVAVTRDQMS 80 (875)
T ss_pred eEEeeeEEEEeccCccEEEcc--cccCCCCCceEEEeecCCccccccCCCCCCCcChhhHHHHHHHhccceeeeEEeeec
Confidence 345689999999999999984 4578889999999999999999774 2379999999999999999999999999744
Q ss_pred CCCCcEEEEEEeCCccHHHHHHHcCCeEEEEcCCCCCCChhhHHHHHHHHHHHHHhCCCccCCCCCCcccccccCCCCcC
Q 003128 89 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAI 168 (845)
Q Consensus 89 d~ygR~~~~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~~~~~~~~~r~i~~~~~ 168 (845)
..++|.++.+++++.++++.|+..||+.+..... .+++|...+...|.+|++.++|+|+.. ....+++.++
T Consensus 81 ~~~~~e~~~~~~~~~~~a~~lv~~g~~~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~~----~~~~~~~~~~-- 151 (875)
T KOG2039|consen 81 ANNGREVGFIYLGDENSAESLVKEGLLDVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSKL----DHFIRNLKDS-- 151 (875)
T ss_pred cccccccceeecCcchhHHHHHhccCCccccccc---ccchhhhhhhhhhhhhhhhcccccccc----ccceeecccc--
Confidence 5679999999999899999999999999888763 237888999999999999999999932 3345777765
Q ss_pred CCCchhhHHHhhhhcCCCCcceEEEEecCCC-EEEEEEcCCceEEEEEEeeeeCCCCCCCCCccccCcccccCCCccccc
Q 003128 169 GDSSNFNAMALLDANKGRPMQGIVEQARDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAE 247 (845)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~~Ve~V~dG~-t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (845)
...++.|++.+.++++.++||+|++|+ +.||++.+++..++++|+|+.||.+..+. ++
T Consensus 152 ----~~~p~~~~~~~~~~~~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s-----------~~------ 210 (875)
T KOG2039|consen 152 ----ALNPAELVDAVGGKPVNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS-----------DG------ 210 (875)
T ss_pred ----ccccHHHHHhcCCceeeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCC-----------CC------
Confidence 346788999888999999999999999 68888888788899999999999987531 11
Q ss_pred cccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEeCCCCChhhHHHHHHhcC
Q 003128 248 AVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENG 327 (845)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~ep~~~eAk~f~~~~ll~r~V~v~~~~~Dk~g~~~g~V~~~~g~~~~di~~~LL~~G 327 (845)
.+...+||+.+|+.|++.++++|.|.|.+++...+-.++|+|++++|+ ++..|+.+|
T Consensus 211 -------------------~~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~----i~~~~~~~~ 267 (875)
T KOG2039|consen 211 -------------------SPSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN----IALELLSEG 267 (875)
T ss_pred -------------------CCCCCCcHHHHHHHhcccchhhhceeeeeccccccccccccccccccc----eeeehhccc
Confidence 012358999999999999999999999999998877899999999984 999999999
Q ss_pred cEEEeecccccchHHHHHHHHHHHHHHHHhcccC-CCCCCCCCCCcccccccceeEEEEEEEeCcEEEEEeCCCCCCCcc
Q 003128 328 LAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNAL 406 (845)
Q Consensus 328 lA~v~~~~~~~~~~~~~~~l~~AE~~Ak~~k~Gi-W~~~~~~~~~~~~~~~~~~~~~V~~V~sgd~i~v~~~~~~~~~~~ 406 (845)
++++.+|+...++.+....++.+|..++..+..+ |++|..+.+++..+..+.+.+.|++++.+||+.+..+. |.
T Consensus 268 ~~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~~~~~s---g~-- 342 (875)
T KOG2039|consen 268 LAKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVLVALDS---GS-- 342 (875)
T ss_pred hHHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceeeeeeccCceEEecCC---CC--
Confidence 9999999999988888778999999999999999 99999998887766678899999999999999999865 22
Q ss_pred ceEEEEeecccCCCCCCCCCCCc--chhhHHHHHHHHHhhcCCcEEEEEEeeeecccccccccccCCCCCCCCCCCCCCc
Q 003128 407 AERRVNLSSIRCPKIGNPRKDEK--PAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTK 484 (845)
Q Consensus 407 ~e~~v~Lssi~~P~~~~~~~~~~--~e~~~~eareflR~~~iGk~V~~~vey~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (845)
+.++.+++|+.||.+++.+..+ .-||+++|++|||+++||++|.+.++|.++... .
T Consensus 343 -~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~~----------------~----- 400 (875)
T KOG2039|consen 343 -ENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRRE----------------N----- 400 (875)
T ss_pred -ceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeeccccccc----------------c-----
Confidence 7899999999999555444334 489999999999999999999999999876420 0
Q ss_pred cccccCCCCCCCCcccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCCCcchhHHHHhcccceeeecC-Cccccc
Q 003128 485 GQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERS 563 (845)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~nv~e~lv~~G~a~v~~~r-~~~~~s 563 (845)
.. ...+.+.+ +.|+|+++.++.+|++++.+|| ++..++
T Consensus 401 ----------------~~---~~~c~~~~----------------------~~~~~~a~~~~~kg~~~~v~~~~~~~~~s 439 (875)
T KOG2039|consen 401 ----------------VP---TKVCALPL----------------------GGGKNVAELLVKKGLATVVRKRQDDEQRS 439 (875)
T ss_pred ----------------cc---cccccccC----------------------CCcceeeEEEecccchhhhhhHhhhhhhc
Confidence 00 01112221 1368999999999999999999 456779
Q ss_pred HHHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecCCcceEE
Q 003128 564 NYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIA 643 (845)
Q Consensus 564 ~~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~~~l~~~~r~~~l~~~Ve~V~dGdtl~v~ip~~~~~i~ 643 (845)
..|+.|..+|..|..+++|+|+.+.++.+.+.+++..-..++..++++++++..+..+|+.+++|.++++++|.+.+.++
T Consensus 440 ~~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~ 519 (875)
T KOG2039|consen 440 SHYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTVDIVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQ 519 (875)
T ss_pred chhhhhhcchHHHHhhhhhhcccCCCcceeechhhhhhhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEE
Confidence 99999999999999999999998777566677775322234448999999999999999999999999999999999999
Q ss_pred EEEeeecCCC-------CCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC-CcchhHHHHHcCCeeeeecc
Q 003128 644 FSFSGVRCPG-------RNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVILLEAGLAKLQTSF 715 (845)
Q Consensus 644 v~LaGI~~P~-------~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~~-~~~i~~~Ll~~GlA~v~~~~ 715 (845)
+.++|++||+ .+++|+.+|..++..+++++++.+.+..+|+.|+|++..|.+ +.++...++++||+.++ +
T Consensus 520 ~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~~e~~L~~~~--~ 597 (875)
T KOG2039|consen 520 FALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKLLEQGLAPEH--F 597 (875)
T ss_pred EeeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeeccCccccccccccccccchhhhhhhhcCccc--h
Confidence 9999999996 488999999999999999999999999999999999999987 88999999999999996 6
Q ss_pred CCCCCcchHHHHHHHHHHH-hcccCccccccCCccccc--ccccccCcccEEEEEEEEEeeCCeEEEEecCc-hhHHHHH
Q 003128 716 GSDRIPDSHLLEQAEKSAK-SQKLKIWENYVEGEEVSN--GAAVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQ 791 (845)
Q Consensus 716 ~~~~~~~~~~l~~AE~~AK-~~k~GlW~~~~~~~~~~~--~~~~~~~~g~~~~v~VseV~s~~~f~vQ~~~~-~~L~~L~ 791 (845)
..........+..++..|+ ..+.++|..+.++..... ..........+..+.+++|..+..||+|..+. .+++++|
T Consensus 598 ~~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~~~F~~q~~~~~~~i~~~~ 677 (875)
T KOG2039|consen 598 AAERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPGKGFYVQSISDGSKITKIM 677 (875)
T ss_pred hhhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecCCCcceeecccchHHHHHHH
Confidence 5555556677899999999 999999999876633211 11000122345678888888779999999985 8999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCEEEEEECCCCcEEeEEEEeecCC
Q 003128 792 QQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSELLPP 837 (845)
Q Consensus 792 ~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~ 837 (845)
..|++......+..+.+.|+.|++|+|+|+-||+||||+|+++...
T Consensus 678 ~~~~~~~~~~~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~~~ 723 (875)
T KOG2039|consen 678 TNLSQLVELKPPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVLDP 723 (875)
T ss_pred HHHHHHhhhcccccCCCCCCCCCeeeeeeccccceeeeeeeeeccC
Confidence 9999998876677678999999999999999999999999998764
No 2
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.93 E-value=1e-24 Score=211.54 Aligned_cols=131 Identities=39% Similarity=0.527 Sum_probs=113.4
Q ss_pred eEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCCCCC----CChhHHHHHHHHHhHcCCCeEEEEEcc
Q 003128 11 WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGL----DEPFAWDSREFLRKLCIGKEVTFRVDY 86 (845)
Q Consensus 11 ~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~~~~~----~ep~a~eAre~Lr~ll~Gk~V~v~~~~ 86 (845)
.+.|+|.+|+|||||.|...+ + ...+|||+||||||..+.... .+|||.+|++||+++|.|+.|.|.++
T Consensus 2 ~~~~~V~~V~DGDT~~v~~~~----~--~~~~vrL~gIdaPe~~~~~~~~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~- 74 (138)
T smart00318 2 EIRGVVERVLDGDTIRVRLPK----N--KLITIRLSGIDAPETARPNKGDGTTDEPFGEEAKEFLKKLLLGKKVQVEVD- 74 (138)
T ss_pred ceeEEEEEEecCCEEEEEeCC----C--CEEEEEEEeccCCccCCCCCCCccccCcHHHHHHHHHHHHhCCCEEEEEEe-
Confidence 468999999999999999763 1 578999999999999865432 69999999999999999999999988
Q ss_pred ccCCCCcEEEEEEe-CCccHHHHHHHcCCeEEEEcCCCCCCChhhHHHHHHHHHHHHHhCCCccC
Q 003128 87 AVPNIGREFGTVIL-GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS 150 (845)
Q Consensus 87 ~~d~ygR~~~~V~~-~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs 150 (845)
..|+|||.+|+||+ +|.|||++||++|||+++..... .....+.+|.+||++||++++|||+
T Consensus 75 ~~D~~gr~~a~v~~~~~~~l~~~Lv~~G~A~~~~~~~~--~~~~~~~~l~~ae~~Ar~~~~GlW~ 137 (138)
T smart00318 75 SKDRYGRFLGTVYLNGGNNIAEELVKEGLAKVYRYADK--DEYRVYDELLEAEEAAKKARKGLWS 137 (138)
T ss_pred ccCCCCCEEEEEEECCCCcHHHHHHhcCCEEEEEecCc--cccHhHHHHHHHHHHHHHhCcCCCC
Confidence 48999999999999 56789999999999999987642 1122257899999999999999997
No 3
>PRK06518 hypothetical protein; Provisional
Probab=99.92 E-value=3.7e-24 Score=214.23 Aligned_cols=138 Identities=20% Similarity=0.239 Sum_probs=114.4
Q ss_pred CCCCCCeEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCC---CCCCChhHHHHHHHHHhHcCCCeEE
Q 003128 5 AAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR---GGLDEPFAWDSREFLRKLCIGKEVT 81 (845)
Q Consensus 5 ~~~~~~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~~---~~~~ep~a~eAre~Lr~ll~Gk~V~ 81 (845)
|......+.|+| +|+|||||+|...+ ......++|||+||||||+... ++..+|||.+|+++|+.++.|+.|.
T Consensus 17 ~~~~~~~~~G~v-~V~DGDTl~l~~~~---~~~~~~~~VRL~GIDAPE~~Q~c~~~~~~wp~G~~A~~~L~~li~gk~V~ 92 (177)
T PRK06518 17 ASNNVVIFHGRA-QVTSGVTFKLIADG---WRKEITRDIRLYGVDTCAPRQKARLGDQEWPCGAVATAWLVTKTLNKWLS 92 (177)
T ss_pred cccccccccceE-EEEcCCEEEEeecc---ccCCCCeEEEEEEEcCCCCCCcccCCCCCCcHHHHHHHHHHHHHCCCeEE
Confidence 345566778988 79999999997531 0011357899999999998643 3467899999999999999999999
Q ss_pred EEEccccCCCCcEEEEEEeCCccHHHHHHHcCCeEEEEcCCCCCCChhhHHHHHHHHHHHHHhCCCccCCC
Q 003128 82 FRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKV 152 (845)
Q Consensus 82 v~~~~~~d~ygR~~~~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~ 152 (845)
|... . |+|||.+|+||++|.+||++||++|||++|..+.. ..+...|..+|++||++++|||+..
T Consensus 93 ~~~~-~-D~ygR~lA~~~~~g~dln~~mV~~G~A~ay~~~~~----~~~~~~y~~aE~~AR~~k~GLW~~~ 157 (177)
T PRK06518 93 CRQA-R-MENGVHYAQCFVDGVDIAALGLAEGMAVLSKDDHE----DPGPAQYASLEEKARKAYRGLWSST 157 (177)
T ss_pred EEEe-c-ccCCCEEEEEEECCEEHHHHHHhCCCEEEEeeccC----CCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 9975 3 99999999999999999999999999999987741 2235679999999999999999954
No 4
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.92 E-value=4.1e-24 Score=204.85 Aligned_cols=123 Identities=40% Similarity=0.560 Sum_probs=109.9
Q ss_pred EEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCC----CCCCChhHHHHHHHHHhHcCCCeEEEEEccccCCCCc
Q 003128 18 AVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR----GGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGR 93 (845)
Q Consensus 18 ~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~~----~~~~ep~a~eAre~Lr~ll~Gk~V~v~~~~~~d~ygR 93 (845)
+|+|||||+|...+ + ...+|||+||||||+.+. ....+|||.+|++||+++|.|+.|.|.++. .|+|||
T Consensus 1 rV~dGDt~~v~~~~----~--~~~~vrL~gId~Pe~~~~~~~~~~~~~~~g~~A~~~l~~~l~~~~V~i~~~~-~d~~gr 73 (129)
T cd00175 1 RVIDGDTIRVRLPP----G--PLITVRLSGIDAPETARPNKGKSETDEPFGEEAKEFLKKLLLGKKVQVEVDS-KDRYGR 73 (129)
T ss_pred CeecCcEEEEEeCC----C--CEEEEEEEeecCccccCCccCCCCCCCchHHHHHHHHHHHhCCCEEEEEEcc-CCCCCC
Confidence 58999999999863 1 578999999999999754 356899999999999999999999999884 899999
Q ss_pred EEEEEEeCC-ccHHHHHHHcCCeEEEEcCCCCCCChhhHHHHHHHHHHHHHhCCCccC
Q 003128 94 EFGTVILGD-KNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS 150 (845)
Q Consensus 94 ~~~~V~~~g-~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs 150 (845)
.+|+||+++ .+||++||++|||+++..+. ..+.+...|..||++||++++|||+
T Consensus 74 ~la~v~~~~~~~v~~~Lv~~G~A~~~~~~~---~~~~~~~~l~~ae~~Ak~~k~GiW~ 128 (129)
T cd00175 74 TLGTVYLNGGENIAEELVKEGLARVYRYYP---DDSEYYDELLEAEEAAKKARKGLWS 128 (129)
T ss_pred EEEEEEeCCCCcHHHHHHhcCCEEEEEECC---CCcHHHHHHHHHHHHHHHhCcCCCC
Confidence 999999977 99999999999999998874 2246889999999999999999997
No 5
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=99.92 E-value=2.7e-24 Score=260.73 Aligned_cols=534 Identities=27% Similarity=0.345 Sum_probs=367.4
Q ss_pred CCeEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCC---CCC-CCChhHHHHHHHHHhHcCCCeEEEEE
Q 003128 9 GGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLAR---RGG-LDEPFAWDSREFLRKLCIGKEVTFRV 84 (845)
Q Consensus 9 ~~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~---~~~-~~ep~a~eAre~Lr~ll~Gk~V~v~~ 84 (845)
...+.+.|..++.+|++.+...+ | .+.++.+..|..|+.+. ... ..-||+.+|++||++.++|++|.+..
T Consensus 318 ~~~~~~~v~e~~~~d~~~~~~~s----g--~~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~ 391 (875)
T KOG2039|consen 318 DKGFSGKVVEVLVSDCVLVALDS----G--SENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQM 391 (875)
T ss_pred cccccceeeeeeccCceEEecCC----C--CceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEee
Confidence 34556689999999999999873 2 46789999999999221 111 35799999999999999999999999
Q ss_pred ccccCCCCc---EEEEEEeCC-ccHHHHHHHcCCeEEEEcCCCCCCChhhHHHHHHHHHHHHHhCCCccCCCCCCccccc
Q 003128 85 DYAVPNIGR---EFGTVILGD-KNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASI 160 (845)
Q Consensus 85 ~~~~d~ygR---~~~~V~~~g-~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~~~~~~~~~ 160 (845)
++.++.+.+ ..|.+++.| .|+++.++.+|++.+.++..+....+..|+.|..+|..|-..+.|+|+.+... ....
T Consensus 392 ~~~~~~~~~~~~~~c~~~~~~~~~~a~~~~~kg~~~~v~~~~~~~~~s~~~d~ll~~E~~~~~~~~~~~s~~~~~-~~~~ 470 (875)
T KOG2039|consen 392 DVIRPRRENVPTKVCALPLGGGKNVAELLVKKGLATVVRKRQDDEQRSSHYDLLLVAEAIAIKGKKGCHSKKLDP-TLRI 470 (875)
T ss_pred ecccccccccccccccccCCCcceeeEEEecccchhhhhhHhhhhhhcchhhhhhcchHHHHhhhhhhcccCCCc-ceee
Confidence 987663222 567777754 89999999999999988875444556677999999999999999999988652 1122
Q ss_pred ccCCCCcCCCCchhhHHHhhh-hcCCCCcceEEEEecCCCEEEEEEcCCceEEEEEEeeeeCCCCCCCCCccccCccccc
Q 003128 161 RNLPPSAIGDSSNFNAMALLD-ANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEET 239 (845)
Q Consensus 161 r~i~~~~~~~~~~~~~~~~l~-~~~~~~~~~~Ve~V~dG~t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~ 239 (845)
+.+.-. ...+...|+. ..++..+..+|+.+++|+.++++++...+.+++.++|++||+..|..
T Consensus 471 ~~~~~~-----i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~~~~g~~~~~~~r~~----------- 534 (875)
T KOG2039|consen 471 TDLTVD-----IVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQFALAGIDCPSGARND----------- 534 (875)
T ss_pred chhhhh-----hhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEEeeccccCccccccc-----------
Confidence 333321 1233445666 35888999999999999999999998889999999999999987611
Q ss_pred CCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEeCCCCChhhH
Q 003128 240 NGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDL 319 (845)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~~~eAk~f~~~~ll~r~V~v~~~~~Dk~g~~~g~V~~~~g~~~~di 319 (845)
....+||+.+|..|+..+++++++.|.++.+|..|+++|..+...+.+ +
T Consensus 535 ----------------------------~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~---~ 583 (875)
T KOG2039|consen 535 ----------------------------VQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTN---L 583 (875)
T ss_pred ----------------------------ccccCCccHHHHHHhhhheeccceEEEEeeeccCcccccccccccccc---c
Confidence 134799999999999999999999999999999999999998765554 9
Q ss_pred HHHHHhcCcEEEeecccccchHHHHHHHHHHHHHHH-HhcccCCCCCCCCCCCcccccccceeEEEEEEEeCcEEEEEeC
Q 003128 320 AMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAK-KTRLRMWTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADD 398 (845)
Q Consensus 320 ~~~LL~~GlA~v~~~~~~~~~~~~~~~l~~AE~~Ak-~~k~GiW~~~~~~~~~~~~~~~~~~~~~V~~V~sgd~i~v~~~ 398 (845)
...++..||+.++ ++..... ....|..++..|+ ..+.++|.+++++...... .+..-| .+..
T Consensus 584 s~~~~e~~L~~~~-~~~e~~~--~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~-----------~~~~~~---~~~~ 646 (875)
T KOG2039|consen 584 SLKLLEQGLAPEH-FAAERSS--EYPPLESAELPAKLEQKLKIWLNYVEPVVEEVV-----------LCLEKD---ERDL 646 (875)
T ss_pred hhhhhhhhcCccc-hhhhhhh--hccchhhhhhccccchhcceeecccccchhhhe-----------eccccc---cccc
Confidence 9999999999999 4443222 2348999999999 9999999999987432210 000000 0000
Q ss_pred CCCCCCccceEEEEeecccCCCCCCCCCCCcchhhHHHH-HHHHHhhcCCcEEEEEEeeeecccccccccccCCCCCCCC
Q 003128 399 SIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREA-REFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGT 477 (845)
Q Consensus 399 ~~~~~~~~~e~~v~Lssi~~P~~~~~~~~~~~e~~~~ea-reflR~~~iGk~V~~~vey~~~~~~~~~~~~~~~~~~~~~ 477 (845)
....+.+..|-.+. ......+..+..++. -..|+..+. ..-.....|.
T Consensus 647 --------~~~~~~~~~i~p~~--~F~~q~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~-------------------- 695 (875)
T KOG2039|consen 647 --------NTLKVVVTEITPGK--GFYVQSISDGSKITKIMTNLSQLVE-LKPPSSGSYT-------------------- 695 (875)
T ss_pred --------ccceeeEeeecCCC--cceeecccchHHHHHHHHHHHHHhh-hcccccCCCC--------------------
Confidence 01122222222111 111111111111111 112222221 1111000000
Q ss_pred CCCCCCccccccCCCCCCCCcccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCCCcchhHHHHhcccceeeecC
Q 003128 478 KGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHR 557 (845)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~nv~e~lv~~G~a~v~~~r 557 (845)
+ .+ | ..++| .
T Consensus 696 ------------------p--------~~--g----------------------------d~c~A------------~-- 705 (875)
T KOG2039|consen 696 ------------------P--------KR--G----------------------------DLCVA------------K-- 705 (875)
T ss_pred ------------------C--------CC--C----------------------------Ceeee------------e--
Confidence 0 00 0 01111 1
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecC
Q 003128 558 DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPK 637 (845)
Q Consensus 558 ~~~~~s~~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~~~l~~~~r~~~l~~~Ve~V~dGdtl~v~ip~ 637 (845)
.+-+..|||+++.. +=++ ....++|+|| ||.+ .+|+. +.++++.... + +|.
T Consensus 706 -y~~D~qwyRa~i~~----------V~~~-~~~~V~yiDy--gn~E----~lp~~-~l~~lp~~~~---------~-~p~ 756 (875)
T KOG2039|consen 706 -YSLDGQWYRALIVE----------VLDP-ESMEVFYIDY--GNIE----TLPFV-RLKPLPPHFS---------L-LPP 756 (875)
T ss_pred -eccccceeeeeeee----------eccC-cceeEEEEec--Cccc----ccccc-cccCCChHHh---------c-Cch
Confidence 12246899998874 1122 3345789999 6887 78888 8899988543 2 677
Q ss_pred CcceEEEEEeeecCCCCCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEe--CCcchhHHHHH-cCCeeeeec
Q 003128 638 ETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWE--SRTNVAVILLE-AGLAKLQTS 714 (845)
Q Consensus 638 ~~~~i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~--~~~~i~~~Ll~-~GlA~v~~~ 714 (845)
. ...|+|+||..|. .+.+.+++..++.+..++..+.+.+...-....+++.++. ...++++.|+. .|++..+..
T Consensus 757 ~--a~~~~L~~ik~~~-~~~~~e~~i~~l~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~d~~~~l~~~~~l~~~~~~ 833 (875)
T KOG2039|consen 757 V--AQECGLAGIKEPQ-LEDLKEEAIRYLDEDTLGHKCQVNVELRVVGNSLLVTLLYTVEELDVGEELVAVEGLSLVEQR 833 (875)
T ss_pred H--HhhhhhhcccCCc-ccchHHHHHHHHHHHhhcccceeeeeeeeeccceeEEEeeecCcCChhHhhhhhccccccccc
Confidence 4 4669999999886 5779999999999999999777764332223356666654 36899999999 999887532
Q ss_pred cC-CCCCcchHHHHHHHHHHHhcccCccccccC
Q 003128 715 FG-SDRIPDSHLLEQAEKSAKSQKLKIWENYVE 746 (845)
Q Consensus 715 ~~-~~~~~~~~~l~~AE~~AK~~k~GlW~~~~~ 746 (845)
.. .........+..++++|+..+.++|.....
T Consensus 834 ~~~~~~q~~~~~~~~~qq~a~~~~~~~~~y~~~ 866 (875)
T KOG2039|consen 834 KTEEVLQALLDQLEKAQQEARKEHLNIWFYGDV 866 (875)
T ss_pred ccchHHHHHhhHhhhchhhHHhhhhhhhhhcCc
Confidence 21 111123467889999999999999987643
No 6
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.91 E-value=8.5e-24 Score=205.07 Aligned_cols=138 Identities=32% Similarity=0.568 Sum_probs=116.5
Q ss_pred CCcceEEEEecCCCEEEEEEcCCceEEEEEEeeeeCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccC
Q 003128 186 RPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASA 265 (845)
Q Consensus 186 ~~~~~~Ve~V~dG~t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (845)
++++|+|.+|.|||||+|.+.+ ++..+|||+||+|||+.+... .
T Consensus 1 ~~~~~~V~~V~DGDT~~v~~~~-~~~~~vrL~gIdaPe~~~~~~----------~------------------------- 44 (138)
T smart00318 1 KEIRGVVERVLDGDTIRVRLPK-NKLITIRLSGIDAPETARPNK----------G------------------------- 44 (138)
T ss_pred CceeEEEEEEecCCEEEEEeCC-CCEEEEEEEeccCCccCCCCC----------C-------------------------
Confidence 3578999999999999998764 367899999999999976320 0
Q ss_pred CCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEeCCCCChhhHHHHHHhcCcEEEeecccccchHHHHH
Q 003128 266 GQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR 345 (845)
Q Consensus 266 ~~~~~~ep~~~eAk~f~~~~ll~r~V~v~~~~~Dk~g~~~g~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~ 345 (845)
...+.+|||.+|+.|++++|++|+|++.+.+.|+|||++|+|++.+|. ||+++||++|||+++.......... ..
T Consensus 45 -~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~~D~~gr~~a~v~~~~~~---~l~~~Lv~~G~A~~~~~~~~~~~~~-~~ 119 (138)
T smart00318 45 -DGTTDEPFGEEAKEFLKKLLLGKKVQVEVDSKDRYGRFLGTVYLNGGN---NIAEELVKEGLAKVYRYADKDEYRV-YD 119 (138)
T ss_pred -CccccCcHHHHHHHHHHHHhCCCEEEEEEeccCCCCCEEEEEEECCCC---cHHHHHHhcCCEEEEEecCccccHh-HH
Confidence 012468999999999999999999999999999999999999998765 4999999999999998665543222 35
Q ss_pred HHHHHHHHHHHhcccCCCC
Q 003128 346 RLKAADLQAKKTRLRMWTN 364 (845)
Q Consensus 346 ~l~~AE~~Ak~~k~GiW~~ 364 (845)
.|.+||++||++++|||++
T Consensus 120 ~l~~ae~~Ar~~~~GlW~~ 138 (138)
T smart00318 120 ELLEAEEAAKKARKGLWSD 138 (138)
T ss_pred HHHHHHHHHHHhCcCCCCC
Confidence 8999999999999999973
No 7
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.90 E-value=6.5e-23 Score=196.49 Aligned_cols=129 Identities=34% Similarity=0.604 Sum_probs=109.7
Q ss_pred EecCCCEEEEEEcCCceEEEEEEeeeeCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCch
Q 003128 194 QARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEP 273 (845)
Q Consensus 194 ~V~dG~t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep 273 (845)
+|.|||||+|.+.+. +.++|||+||+|||+.+... + ...+.+|
T Consensus 1 rV~dGDt~~v~~~~~-~~~~vrL~gId~Pe~~~~~~-----------~-------------------------~~~~~~~ 43 (129)
T cd00175 1 RVIDGDTIRVRLPPG-PLITVRLSGIDAPETARPNK-----------G-------------------------KSETDEP 43 (129)
T ss_pred CeecCcEEEEEeCCC-CEEEEEEEeecCccccCCcc-----------C-------------------------CCCCCCc
Confidence 589999999987644 67899999999999876310 0 1245799
Q ss_pred hHHHHHHHHHHHccCceEEEEEeeecCCCCEEEEEEeCCCCChhhHHHHHHhcCcEEEeecccccchHHHHHHHHHHHHH
Q 003128 274 FALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQ 353 (845)
Q Consensus 274 ~~~eAk~f~~~~ll~r~V~v~~~~~Dk~g~~~g~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~~l~~AE~~ 353 (845)
||.+|++|++++|++++|.|.+.+.|+|||++|+|++.++. ||+++||++|||+++...... ......|.+||++
T Consensus 44 ~g~~A~~~l~~~l~~~~V~i~~~~~d~~gr~la~v~~~~~~---~v~~~Lv~~G~A~~~~~~~~~--~~~~~~l~~ae~~ 118 (129)
T cd00175 44 FGEEAKEFLKKLLLGKKVQVEVDSKDRYGRTLGTVYLNGGE---NIAEELVKEGLARVYRYYPDD--SEYYDELLEAEEA 118 (129)
T ss_pred hHHHHHHHHHHHhCCCEEEEEEccCCCCCCEEEEEEeCCCC---cHHHHHHhcCCEEEEEECCCC--cHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997644 599999999999999865543 2344689999999
Q ss_pred HHHhcccCCCC
Q 003128 354 AKKTRLRMWTN 364 (845)
Q Consensus 354 Ak~~k~GiW~~ 364 (845)
||++|+|||++
T Consensus 119 Ak~~k~GiW~~ 129 (129)
T cd00175 119 AKKARKGLWSD 129 (129)
T ss_pred HHHhCcCCCCC
Confidence 99999999973
No 8
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.84 E-value=2.5e-20 Score=191.18 Aligned_cols=128 Identities=29% Similarity=0.431 Sum_probs=112.7
Q ss_pred EEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCC--CCCCChhHHHHHHHHHhHcCC-CeEEEEEcccc
Q 003128 12 YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR--GGLDEPFAWDSREFLRKLCIG-KEVTFRVDYAV 88 (845)
Q Consensus 12 ~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~~--~~~~ep~a~eAre~Lr~ll~G-k~V~v~~~~~~ 88 (845)
..+.|.+|+|||||.+.... .+..+|||.||||||..+. .+..+|||.+|++||++++.+ +.|.|......
T Consensus 42 ~~~~v~~v~dGDT~~v~~~~------~~~~~iRl~gIdaPe~~~~~~~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~ 115 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGEG------GQAVKIRLAGIDAPETKQTCAGGKSQPCGEEAREFLRNLLLGRRTVECDLADRK 115 (192)
T ss_pred CCCceEEecCCCeEEEecCC------CceeEEEEeccCCCcccccCCcccccchHHHHHHHHHHHhcCCceEEEecCCcc
Confidence 35799999999999999873 2678999999999999864 456899999999999999997 88888876327
Q ss_pred CCCCcEEEEEEeCCccHHHHHHHcCCeEEEEcCCCCCCChhhHHHHHHHHHHHHHhCCCccCCC
Q 003128 89 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKV 152 (845)
Q Consensus 89 d~ygR~~~~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~ 152 (845)
|+|||.+|+||.+|.+||++||++|||+++. . ..+...|.++|+.||++++|||+.+
T Consensus 116 d~y~R~la~v~~~~~~v~~~lV~~G~A~~~~-~------~~~~~~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 116 DRYGRLLAYVTVDGTDVNLELVKEGLARVYY-N------SEYGGEYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred cCCCcEEEEEEECCEEHHHHHHhCCCEEEec-c------ccchHHHHHHHHHHHHcccCccCCC
Confidence 9999999999999999999999999999998 1 2356789999999999999999986
No 9
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.82 E-value=3e-20 Score=171.97 Aligned_cols=107 Identities=29% Similarity=0.497 Sum_probs=94.6
Q ss_pred EEEEEeecCCCCCCCCCCCChhHHHHHHHHHhHcCCCeEEEEEccc-cCCCCcEEEEEEeCCccHHHHHHHcCCeEEEEc
Q 003128 42 TLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYA-VPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQ 120 (845)
Q Consensus 42 ~vrL~gIdaPe~~~~~~~~ep~a~eAre~Lr~ll~Gk~V~v~~~~~-~d~ygR~~~~V~~~g~nv~~~Lv~~G~A~v~~~ 120 (845)
+|||+||||||..+.+...+|||.+|++||++++.++.|.+.++.. .|.+||.+|+||+++.+||+.||++|||+++..
T Consensus 1 ~vrL~gI~~Pe~~~~~~~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~d~~gr~~~~v~~~~~~in~~Ll~~GlA~v~~~ 80 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPDKPEEPYGQEAKEFLRELLLGRQVVVEVDDIKQDKYGRLLAYVYVDGEDINEELLEEGLARVYRR 80 (108)
T ss_dssp EEEETTEE-SSSTCCCTTTSTTHHHHHHHHHHHHHTCSCEEEEEESSBSTTSCEEEEEEETTEEHHHHHHHTTSSEE-CG
T ss_pred CEEEEEEECCCCCCCCCccchHHHHHHHHHHHHhCCCeeeecccccCCCCCCceeEEEEEechhhhHHHHhCCeEEEEEe
Confidence 6999999999998777789999999999999999999999988754 689999999999999999999999999999986
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhCCCccCC
Q 003128 121 GSQKGEASPFLAELLRLEEQAKLQGLGRWSK 151 (845)
Q Consensus 121 ~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~ 151 (845)
.. ....++..|..||++||++++|||++
T Consensus 81 ~~---~~~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 81 YP---SNSEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp BT---TBCTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred cC---CCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 53 24567899999999999999999984
No 10
>PRK06518 hypothetical protein; Provisional
Probab=99.80 E-value=6.8e-19 Score=176.43 Aligned_cols=126 Identities=16% Similarity=0.185 Sum_probs=107.4
Q ss_pred cCCccceEEEEEecCCEEEEEecC--CcceEEEEEeeecCCCCCc---------ccHHHHHHHHHHHhcCceEEEEEEEE
Q 003128 614 RSRRIPAVVEYVLSGHRFKVLIPK--ETCSIAFSFSGVRCPGRNE---------RYSNEALLLMRQKILQRDVEIEVETV 682 (845)
Q Consensus 614 r~~~l~~~Ve~V~dGdtl~v~ip~--~~~~i~v~LaGI~~P~~~e---------~~g~EA~~~l~~~ll~r~V~v~v~~~ 682 (845)
....+.|.| .|+|||||.|..+. .+..++|||+|||+|+..+ |||.+|+.+|..++.++.|+|....
T Consensus 20 ~~~~~~G~v-~V~DGDTl~l~~~~~~~~~~~~VRL~GIDAPE~~Q~c~~~~~~wp~G~~A~~~L~~li~gk~V~~~~~~- 97 (177)
T PRK06518 20 NVVIFHGRA-QVTSGVTFKLIADGWRKEITRDIRLYGVDTCAPRQKARLGDQEWPCGAVATAWLVTKTLNKWLSCRQAR- 97 (177)
T ss_pred ccccccceE-EEEcCCEEEEeeccccCCCCeEEEEEEEcCCCCCCcccCCCCCCcHHHHHHHHHHHHHCCCeEEEEEec-
Confidence 466778888 79999999995321 1124789999999999776 8999999999999999999999877
Q ss_pred cCCCcEEEEEEeCCcchhHHHHHcCCeeeeeccCCCCCcchHHHHHHHHHHHhcccCcccc
Q 003128 683 DRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWEN 743 (845)
Q Consensus 683 Dk~Gr~~g~v~~~~~~i~~~Ll~~GlA~v~~~~~~~~~~~~~~l~~AE~~AK~~k~GlW~~ 743 (845)
|+|||+++.++.++.+|+.+||++|||+++..+. ...+...|..+|++||..++|||+.
T Consensus 98 D~ygR~lA~~~~~g~dln~~mV~~G~A~ay~~~~--~~~~~~~y~~aE~~AR~~k~GLW~~ 156 (177)
T PRK06518 98 MENGVHYAQCFVDGVDIAALGLAEGMAVLSKDDH--EDPGPAQYASLEEKARKAYRGLWSS 156 (177)
T ss_pred ccCCCEEEEEEECCEEHHHHHHhCCCEEEEeecc--CCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999975432 2334567999999999999999985
No 11
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.76 E-value=2.2e-18 Score=159.43 Aligned_cols=106 Identities=29% Similarity=0.533 Sum_probs=87.8
Q ss_pred EEEEeeeeCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEE
Q 003128 213 QVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVR 292 (845)
Q Consensus 213 ~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~~~eAk~f~~~~ll~r~V~ 292 (845)
+|||+||+||+..+. ....+|||.+|+.|++++|++++|.
T Consensus 1 ~vrL~gI~~Pe~~~~----------------------------------------~~~~~~~~~~A~~~l~~~l~~~~~~ 40 (108)
T PF00565_consen 1 KVRLAGIDAPETNQP----------------------------------------DKPEEPYGQEAKEFLRELLLGRQVV 40 (108)
T ss_dssp EEEETTEE-SSSTCC----------------------------------------CTTTSTTHHHHHHHHHHHHHTCSCE
T ss_pred CEEEEEEECCCCCCC----------------------------------------CCccchHHHHHHHHHHHHhCCCeee
Confidence 699999999998752 2358999999999999999999999
Q ss_pred EEEeee--cCCCCEEEEEEeCCCCChhhHHHHHHhcCcEEEeecccccchHHHHHHHHHHHHHHHHhcccCCCC
Q 003128 293 IVLEGV--DKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTN 364 (845)
Q Consensus 293 v~~~~~--Dk~g~~~g~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~~l~~AE~~Ak~~k~GiW~~ 364 (845)
+.+.+. |++||++|+|+++ + .||+++||++|||+++...... ......|..||++||++|+|||++
T Consensus 41 ~~~~~~~~d~~gr~~~~v~~~-~---~~in~~Ll~~GlA~v~~~~~~~--~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 41 VEVDDIKQDKYGRLLAYVYVD-G---EDINEELLEEGLARVYRRYPSN--SEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp EEEEESSBSTTSCEEEEEEET-T---EEHHHHHHHTTSSEE-CGBTTB--CTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred ecccccCCCCCCceeEEEEEe-c---hhhhHHHHhCCeEEEEEecCCC--cHHHHHHHHHHHHHHHhCcCCCCC
Confidence 999877 9999999999997 3 3699999999999999743321 123358999999999999999985
No 12
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.71 E-value=8.3e-17 Score=165.12 Aligned_cols=129 Identities=30% Similarity=0.418 Sum_probs=109.3
Q ss_pred cceEEEEecCCCEEEEEEcCCceEEEEEEeeeeCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCC
Q 003128 188 MQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQ 267 (845)
Q Consensus 188 ~~~~Ve~V~dG~t~~v~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (845)
..+.|.+|.|||||.+.... .+.++|||.|||+||..+.. .
T Consensus 42 ~~~~v~~v~dGDT~~v~~~~-~~~~~iRl~gIdaPe~~~~~-----------~--------------------------- 82 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGEG-GQAVKIRLAGIDAPETKQTC-----------A--------------------------- 82 (192)
T ss_pred CCCceEEecCCCeEEEecCC-CceeEEEEeccCCCcccccC-----------C---------------------------
Confidence 67899999999999998653 57789999999999987521 0
Q ss_pred CCCCchhHHHHHHHHHHHccC-ceEEEEEee-ecCCCCEEEEEEeCCCCChhhHHHHHHhcCcEEEeecccccchHHHHH
Q 003128 268 QSTDEPFALDAKYFTEMRVLN-REVRIVLEG-VDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR 345 (845)
Q Consensus 268 ~~~~ep~~~eAk~f~~~~ll~-r~V~v~~~~-~Dk~g~~~g~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~ 345 (845)
....+|||.+|+.|++..|+. +.|.+.+.. .|+|||++|+|+ .+|. ||+.+||++|||+++. +. ....
T Consensus 83 ~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~d~y~R~la~v~-~~~~---~v~~~lV~~G~A~~~~---~~---~~~~ 152 (192)
T COG1525 83 GGKSQPCGEEAREFLRNLLLGRRTVECDLADRKDRYGRLLAYVT-VDGT---DVNLELVKEGLARVYY---NS---EYGG 152 (192)
T ss_pred cccccchHHHHHHHHHHHhcCCceEEEecCCcccCCCcEEEEEE-ECCE---EHHHHHHhCCCEEEec---cc---cchH
Confidence 135799999999999999996 888888888 999999999999 4444 6999999999999997 11 1224
Q ss_pred HHHHHHHHHHHhcccCCCCC
Q 003128 346 RLKAADLQAKKTRLRMWTNY 365 (845)
Q Consensus 346 ~l~~AE~~Ak~~k~GiW~~~ 365 (845)
.|..||+.||++++|||+..
T Consensus 153 ~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 153 EYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred HHHHHHHHHHHcccCccCCC
Confidence 89999999999999999986
No 13
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=98.70 E-value=9.6e-08 Score=89.14 Aligned_cols=74 Identities=24% Similarity=0.360 Sum_probs=58.4
Q ss_pred cccEEEEEEEEEeeCCeEEEEecC-chhHHHHHHHHHHhhccCCCCCCCCCCCCCCEEEEEECCCCcEEeEEEEee
Q 003128 760 QKEVLKVVVTEILGGGKFYVQQVG-DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSEL 834 (845)
Q Consensus 760 ~g~~~~v~VseV~s~~~f~vQ~~~-~~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~~ 834 (845)
.++.+.|+||+|.++++||++..+ ...+++|+++|+.++..... .....+.+|..|++.++.|+.||||+|...
T Consensus 2 ~~~~~~v~It~v~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~Ra~I~~~ 76 (121)
T PF00567_consen 2 VGKTFEVYITHVDSPGEFYVQPDSADKAYEKLQEELQDYYENNPK-SPSPESNPGEGCLCVVSEDGRWYRAVITVD 76 (121)
T ss_dssp ---EEEEEEEEECTTSEEEEEECCCHHHHHHHHHHHHHHHHHS-C-TTCST--TTEEEEEEETTTSEEEEEEEEEE
T ss_pred CCCEEEEEEEEEecCCEEEEEEcCCHHHHHHHHHHHHHHHhcccc-cCccccccCCEEEEEEecCCceeeEEEEEe
Confidence 367899999999999999997766 48999999999999877544 223557799999999999999999999333
No 14
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=97.98 E-value=8.7e-06 Score=64.20 Aligned_cols=26 Identities=35% Similarity=0.739 Sum_probs=23.8
Q ss_pred CCEEEEEECCCCcEEeEEEEeecCCC
Q 003128 813 GEIVLAQFSADNSWNRAMVSELLPPL 838 (845)
Q Consensus 813 G~~c~A~fs~D~~WYRAkV~~~~~~~ 838 (845)
|++|+|+|++|+.||||+|+++.++.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~ 26 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDG 26 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCC
Confidence 79999999999999999999998643
No 15
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.74 E-value=4.1e-05 Score=62.59 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=26.1
Q ss_pred CCCCCCEEEEEECCCCcEEeEEEEeecCC
Q 003128 809 NPKKGEIVLAQFSADNSWNRAMVSELLPP 837 (845)
Q Consensus 809 ~pk~G~~c~A~fs~D~~WYRAkV~~~~~~ 837 (845)
.|++|++|+|+| .|+.||||+|+++.++
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~~~~ 29 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKVDGE 29 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEECCC
Confidence 488999999999 8999999999999975
No 16
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=96.63 E-value=0.0031 Score=52.37 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=28.1
Q ss_pred CCCCCCEEEEEECCCCcEEeEEEEeecCCCcc
Q 003128 809 NPKKGEIVLAQFSADNSWNRAMVSELLPPLQF 840 (845)
Q Consensus 809 ~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~~~ 840 (845)
..++|+.|.|.|++|+.||+|+|+++.++.++
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~~~~~ 33 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLGDGKY 33 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECCCCEE
Confidence 36799999999999999999999999985544
No 17
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=94.58 E-value=0.034 Score=60.14 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=24.0
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeecCCC
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELLPPL 838 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~ 838 (845)
..-++||.|.|.||+||+||-|+|.++..+.
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~ 97 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDEED 97 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEETTT
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcCCC
Confidence 4678999999999999999999999998764
No 18
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=83.60 E-value=1.4 Score=35.99 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=22.4
Q ss_pred CCCCEEEEEECCCCcEEeEEEEeecCC
Q 003128 811 KKGEIVLAQFSADNSWNRAMVSELLPP 837 (845)
Q Consensus 811 k~G~~c~A~fs~D~~WYRAkV~~~~~~ 837 (845)
++|+.|.+.+ .++.||.|+|+++...
T Consensus 2 ~vG~~v~~~~-~~~~~y~A~I~~~r~~ 27 (55)
T PF11717_consen 2 EVGEKVLCKY-KDGQWYEAKILDIREK 27 (55)
T ss_dssp -TTEEEEEEE-TTTEEEEEEEEEEEEC
T ss_pred CcCCEEEEEE-CCCcEEEEEEEEEEec
Confidence 5899999998 6999999999998753
No 19
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=81.58 E-value=1.2 Score=46.53 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=26.3
Q ss_pred CCCCCCEEEEEECCCCcEEeEEEEeecC
Q 003128 809 NPKKGEIVLAQFSADNSWNRAMVSELLP 836 (845)
Q Consensus 809 ~pk~G~~c~A~fs~D~~WYRAkV~~~~~ 836 (845)
-.++|+-|.|.|++|+.||=|.|..+.+
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita 117 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITA 117 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccC
Confidence 4789999999999999999999999887
No 20
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=78.67 E-value=3.3 Score=33.80 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=24.4
Q ss_pred CCCCCCEEEEEECCCCcEEeEEEEeecCCCccc
Q 003128 809 NPKKGEIVLAQFSADNSWNRAMVSELLPPLQFA 841 (845)
Q Consensus 809 ~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~~~~ 841 (845)
....|+.|-++...++.||.|+|++.....+..
T Consensus 5 k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y 37 (55)
T PF09465_consen 5 KFAIGEVVMVRWPGSSLYYEGKVLSYDSKSDRY 37 (55)
T ss_dssp SS-SS-EEEEE-TTTS-EEEEEEEEEETTTTEE
T ss_pred cccCCCEEEEECCCCCcEEEEEEEEecccCceE
Confidence 455799999999999999999999987655543
No 21
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=66.27 E-value=8.3 Score=32.77 Aligned_cols=29 Identities=28% Similarity=0.191 Sum_probs=19.5
Q ss_pred CCCCCEEEEEECCC---CcEEeEEEEeecCCC
Q 003128 810 PKKGEIVLAQFSAD---NSWNRAMVSELLPPL 838 (845)
Q Consensus 810 pk~G~~c~A~fs~D---~~WYRAkV~~~~~~~ 838 (845)
+++|+.|-...-++ +.||+|+|++...+.
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~ 32 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDD 32 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT-
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCc
Confidence 46899998876664 459999999988764
No 22
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=57.89 E-value=30 Score=37.07 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=24.6
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeec
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELL 835 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~ 835 (845)
..+.+|.+|+|.|.+--++|||.|.+-.
T Consensus 197 ~~fpp~~~VLA~YP~TTcFY~aiVh~tp 224 (264)
T KOG3038|consen 197 ALFPPGTIVLAVYPGTTCFYKAIVHSTP 224 (264)
T ss_pred cCCCCCCEEEEEcCCcceeeeeEeecCC
Confidence 4567899999999999999999998744
No 23
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]
Probab=57.39 E-value=27 Score=41.09 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=56.1
Q ss_pred cCcccEEEEEEEEEeeCCeEEEEecCc---hhHHHHHHHHHHhhccCCCCCC-CCCCCCCCEEEEEECCCCcEEeEEEEe
Q 003128 758 GKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIG-AFNPKKGEIVLAQFSADNSWNRAMVSE 833 (845)
Q Consensus 758 ~~~g~~~~v~VseV~s~~~f~vQ~~~~---~~L~~L~~~l~~~~~~~~~~~~-~~~pk~G~~c~A~fs~D~~WYRAkV~~ 833 (845)
++.+-.+.+.|..+.+.++||+|...- ..|-.|-..|..+|......+. +.+...+-+|+|. .+++.|.||.+..
T Consensus 401 fpd~i~cev~V~s~i~a~hlf~pq~tip~F~aLrsldqwm~l~y~eq~t~pelP~P~~~t~~sAAp-~g~~awpra~lvd 479 (608)
T KOG2279|consen 401 FPDNIDCEVKVLSAIRADHLFLPQQTIPCFLALRSLDQWMELAYDEQLTHPELPKPLVATISSAAP-TGISAWPRAYLVD 479 (608)
T ss_pred cCCCceEEeeeehhhcccceeeccccchhhhhhhhHHHHHHHHhhcccCCcCCCcchhhceeeecc-cCCCCccceEEEe
Confidence 455678999999999999999999864 3555666666666653222221 2223346667775 6788999999998
Q ss_pred ecCCCcc
Q 003128 834 LLPPLQF 840 (845)
Q Consensus 834 ~~~~~~~ 840 (845)
-..+.+.
T Consensus 480 ~~det~l 486 (608)
T KOG2279|consen 480 TSDETKL 486 (608)
T ss_pred ccCcccc
Confidence 7655543
No 24
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=52.58 E-value=25 Score=33.77 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=46.0
Q ss_pred cccEEEEEEEEEeeCCeEEEEecCchhHHHHHHHHHHhhccCCCCCCCCCCCCCCEEEEEECCCCc-EEeEEEEe
Q 003128 760 QKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNS-WNRAMVSE 833 (845)
Q Consensus 760 ~g~~~~v~VseV~s~~~f~vQ~~~~~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~-WYRAkV~~ 833 (845)
-|-++.++|....+.+.|.+++.++..-.-.+..+-.+.. . .....++||.|+|+-..++. |+-|+|+.
T Consensus 11 DG~YY~GtV~~~~~~~~~lV~f~~~~~~~v~~~~iI~~~~----~-~~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~ 80 (124)
T PF15057_consen 11 DGFYYPGTVKKCVSSGQFLVEFDDGDTQEVPISDIIALSD----A-MRHSLQVGDKVLAPWEPDDCRYGPGTVIA 80 (124)
T ss_pred CCcEEeEEEEEccCCCEEEEEECCCCEEEeChHHeEEccC----c-ccCcCCCCCEEEEecCcCCCEEeCEEEEE
Confidence 3778999999999999999999543222222222222221 1 12458899999999654444 88899997
No 25
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=47.39 E-value=22 Score=34.42 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=42.5
Q ss_pred ccEEEEEEEEEeeCC-eEEEEecCchhHHHHHHHHHHhhccC-----CCC------CCCCCCCCCCEEEEEECCCCcEEe
Q 003128 761 KEVLKVVVTEILGGG-KFYVQQVGDQKVASVQQQLASLNLQE-----APV------IGAFNPKKGEIVLAQFSADNSWNR 828 (845)
Q Consensus 761 g~~~~v~VseV~s~~-~f~vQ~~~~~~L~~L~~~l~~~~~~~-----~~~------~~~~~pk~G~~c~A~fs~D~~WYR 828 (845)
++-+-+.|..+.+.+ .+-|+..+... ....|..+. .|. .......+|+.|+|.|.+--++||
T Consensus 17 ~~WIla~Vv~~~~~~~rYeV~D~d~~~------~~~~~~~~~~~iIPLP~~~~~~~~~~~~f~~g~~VLAlYP~TT~FY~ 90 (130)
T PF07039_consen 17 EEWILAEVVKYNSDGNRYEVEDPDPEE------EKKRYKLSRKQIIPLPKKAPPDTDPLAEFPKGTKVLALYPDTTCFYP 90 (130)
T ss_dssp CEEEEEEEEEEETTTTEEEEEETTTCT------TTEEEEEEGGGEEEE-SB--TTT-GGGS--TT-EEEEE-TTSSEEEE
T ss_pred CCEEEEEEEEEeCCCCEEEEecCCCCC------CCceEEeCHHHEEECCCccCCCCCchhhCCCCCEEEEECCCCceEEE
Confidence 566788888888766 89999987432 000222110 011 112456799999999999999999
Q ss_pred EEEEee
Q 003128 829 AMVSEL 834 (845)
Q Consensus 829 AkV~~~ 834 (845)
|.|.+.
T Consensus 91 A~V~~~ 96 (130)
T PF07039_consen 91 ATVVSP 96 (130)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 999987
No 26
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=35.75 E-value=48 Score=34.43 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=38.2
Q ss_pred eEEEEEeecCCCCCCCCCCCChh-HHHHHHHHHhHcC----CCeEEEEEccccCCCCcEE
Q 003128 41 KTLTLSSIITPRLARRGGLDEPF-AWDSREFLRKLCI----GKEVTFRVDYAVPNIGREF 95 (845)
Q Consensus 41 ~~vrL~gIdaPe~~~~~~~~ep~-a~eAre~Lr~ll~----Gk~V~v~~~~~~d~ygR~~ 95 (845)
-+.|+.||..|-+....++.--| +|+||.|..+++. ...|.+.+. .++||.-
T Consensus 80 Pt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvsLaIN---s~~gRtQ 136 (252)
T COG2134 80 PTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVSLAIN---SKNGRTQ 136 (252)
T ss_pred eeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceEEEec---CccCccc
Confidence 37899999999986544444333 9999999999984 356777765 4567764
No 27
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=29.86 E-value=75 Score=37.07 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=26.6
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeecCC
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELLPP 837 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~ 837 (845)
....+|+.|.|..++|+.||.|+|+++..+
T Consensus 52 ~~~~VGekVla~~~~Dg~~~~A~VI~~R~~ 81 (450)
T PLN00104 52 LPLEVGTRVMCRWRFDGKYHPVKVIERRRG 81 (450)
T ss_pred ceeccCCEEEEEECCCCCEEEEEEEEEecc
Confidence 457799999999999999999999998853
No 28
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=28.35 E-value=46 Score=34.24 Aligned_cols=30 Identities=20% Similarity=0.091 Sum_probs=26.8
Q ss_pred CCCCCCCCEEEEEECCCCcEEeEEEEeecC
Q 003128 807 AFNPKKGEIVLAQFSADNSWNRAMVSELLP 836 (845)
Q Consensus 807 ~~~pk~G~~c~A~fs~D~~WYRAkV~~~~~ 836 (845)
....|+|+.|-|.|+++++.|-|.|..+..
T Consensus 65 ~~~wKVgdkc~A~Y~e~g~~ypatidsi~~ 94 (218)
T KOG4327|consen 65 LQQWKVGDKCSAIYSEDGCIYPATIDSIDF 94 (218)
T ss_pred hhhheecceeeeeeecCcccccceeccccc
Confidence 367899999999999999999999988763
No 29
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=26.14 E-value=1e+02 Score=33.07 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=28.4
Q ss_pred CCCCCCCCEEEEEE---CCCCcEEeEEEEeecCCCc
Q 003128 807 AFNPKKGEIVLAQF---SADNSWNRAMVSELLPPLQ 839 (845)
Q Consensus 807 ~~~pk~G~~c~A~f---s~D~~WYRAkV~~~~~~~~ 839 (845)
.+.+.+|+-|+|++ |+|+.|-=|.|+++.++..
T Consensus 125 ~~~~~~gd~VAa~v~~~~~dg~WIlaeVv~~~~~~~ 160 (264)
T KOG3038|consen 125 DYVLLKGDEVAARVKAVSEDGDWILAEVVKVSSETR 160 (264)
T ss_pred CccccCCceeeeeeeeccCCCCEEEEEEEEEecCCc
Confidence 36788999999987 5899999999999998763
No 30
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=24.82 E-value=1.2e+02 Score=24.66 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=31.2
Q ss_pred ccceeEEEEEEEeCcEEEEEeCCCCCCCccceEEEEeecccCC
Q 003128 377 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCP 419 (845)
Q Consensus 377 ~~~~~~~V~~V~sgd~i~v~~~~~~~~~~~~e~~v~Lssi~~P 419 (845)
+..+.|+|++|..++.+.|...+. ..+.+..+..+.||..
T Consensus 17 ~~W~~a~V~~~~~~~~~~V~~~~~---~~~~~e~v~~~~LRp~ 56 (61)
T smart00743 17 DSWWEAVVTKVLGDGKYLVRYLTE---SEPLKETVDWSDLRPH 56 (61)
T ss_pred CEEEEEEEEEECCCCEEEEEECCC---CcccEEEEeHHHcccC
Confidence 357899999999989999999651 1234778889999863
No 31
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=24.20 E-value=1.4e+02 Score=26.99 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=23.1
Q ss_pred CcceEEEEecCCCEEEEEEcCCceEEEEEEee
Q 003128 187 PMQGIVEQARDGSTLRVYLLPEFQFVQVFVAG 218 (845)
Q Consensus 187 ~~~~~Ve~V~dG~t~~v~~~~~~~~~~v~l~G 218 (845)
.+.|+|+.++.++.|+|.|. ++..+.-.++|
T Consensus 8 e~~G~V~e~Lp~~~frV~Le-nG~~vla~isG 38 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLE-NGVEVGAYASG 38 (87)
T ss_pred EEEEEEEEECCCCEEEEEeC-CCCEEEEEecc
Confidence 46899999999999999986 44444444444
No 32
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=24.18 E-value=64 Score=34.74 Aligned_cols=52 Identities=25% Similarity=0.429 Sum_probs=36.5
Q ss_pred EEEEEeecCCCCCCCCCCC-ChhHHHHHHHHHhHcCC----CeEEEEEccccCCCCcEEE
Q 003128 42 TLTLSSIITPRLARRGGLD-EPFAWDSREFLRKLCIG----KEVTFRVDYAVPNIGREFG 96 (845)
Q Consensus 42 ~vrL~gIdaPe~~~~~~~~-ep~a~eAre~Lr~ll~G----k~V~v~~~~~~d~ygR~~~ 96 (845)
+-|+.||++|.+-....++ --.||.||.|+.+.+.. ..|.+-+. .+|||.--
T Consensus 81 t~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaIN---S~~gRSQn 137 (252)
T PRK05471 81 TYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAIN---SRYGRTQD 137 (252)
T ss_pred cccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEec---CCCCcccc
Confidence 6789999999997554433 44699999999997732 23555544 35788654
No 33
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=23.35 E-value=1.4e+02 Score=25.62 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=23.0
Q ss_pred CcceEEEEecCCCEEEEEEcCCceEEEEEEee
Q 003128 187 PMQGIVEQARDGSTLRVYLLPEFQFVQVFVAG 218 (845)
Q Consensus 187 ~~~~~Ve~V~dG~t~~v~~~~~~~~~~v~l~G 218 (845)
.+.|+|..++.++.|+|.+. ++..+.-++.|
T Consensus 6 e~~G~V~e~L~~~~f~V~l~-ng~~vla~i~G 36 (68)
T TIGR00008 6 EMEGKVTESLPNAMFRVELE-NGHEVLAHISG 36 (68)
T ss_pred EEEEEEEEECCCCEEEEEEC-CCCEEEEEecC
Confidence 46899999999999999986 34444444444
No 34
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=22.84 E-value=85 Score=27.53 Aligned_cols=60 Identities=18% Similarity=0.365 Sum_probs=0.0
Q ss_pred EEEEEEEEEeeCCeEEEEecCc-hhHHHHHHHHHHhhccCCCCCCCCCCCCCCEEEEEECCCCcEEeEEEE
Q 003128 763 VLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVS 832 (845)
Q Consensus 763 ~~~v~VseV~s~~~f~vQ~~~~-~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~ 832 (845)
.+.+.|+++...+.|.++..++ ..+..|--.|..++-. +..||+|.++.+ +-.-=||.|+
T Consensus 8 e~~g~V~e~L~~~~f~v~~edg~~~~ahI~GKmr~~~i~---------I~~GD~V~Ve~~-~~d~~kg~I~ 68 (75)
T COG0361 8 EMEGTVIEMLPNGRFRVELENGHERLAHISGKMRKNRIR---------ILPGDVVLVELS-PYDLTKGRIV 68 (75)
T ss_pred EEEEEEEEecCCCEEEEEecCCcEEEEEccCcchheeEE---------eCCCCEEEEEec-ccccccccEE
Done!