Query 003128
Match_columns 845
No_of_seqs 424 out of 2302
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 14:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bdl_A Staphylococcal nuclease 100.0 2.8E-63 9.7E-68 584.5 43.2 395 377-838 22-439 (570)
2 3bdl_A Staphylococcal nuclease 100.0 1.1E-63 3.8E-68 588.0 35.8 520 6-735 19-569 (570)
3 4eqp_A Thermonuclease; staphyl 99.9 1.9E-27 6.4E-32 230.7 14.5 134 5-154 3-139 (143)
4 4eqp_A Thermonuclease; staphyl 99.9 1.2E-22 4.1E-27 197.0 14.5 129 616-747 8-140 (143)
5 2wac_A CG7008-PA; unknown func 99.6 2.4E-14 8.4E-19 147.8 15.3 133 8-152 65-217 (218)
6 2wac_A CG7008-PA; unknown func 99.5 1.6E-13 5.3E-18 141.7 13.4 103 640-744 112-217 (218)
7 4b9w_A TDRD1, tudor domain-con 99.5 2.4E-13 8E-18 139.1 13.1 81 757-839 12-95 (201)
8 4b9x_A TDRD1, tudor domain-con 99.4 4E-13 1.4E-17 139.9 12.8 81 757-839 12-95 (226)
9 3ntk_A Maternal protein tudor; 99.4 1.2E-12 4.1E-17 130.3 11.5 74 762-838 2-76 (169)
10 2hqx_A P100 CO-activator tudor 99.3 7.3E-13 2.5E-17 139.6 4.8 135 8-153 78-233 (246)
11 2hqx_A P100 CO-activator tudor 99.2 4.5E-12 1.5E-16 133.5 3.6 106 640-747 128-235 (246)
12 3fdr_A Tudor and KH domain-con 99.0 5.6E-10 1.9E-14 100.1 8.2 53 784-838 4-56 (94)
13 2eqk_A Tudor domain-containing 98.8 1.9E-09 6.3E-14 93.1 3.6 48 791-840 5-52 (85)
14 2diq_A Tudor and KH domain-con 98.8 4.7E-09 1.6E-13 96.8 6.3 52 785-838 10-61 (110)
15 4a4f_A SurviVal of motor neuro 98.6 2.6E-08 9E-13 82.7 5.5 32 807-838 6-37 (64)
16 3s6w_A Tudor domain-containing 98.5 7.9E-08 2.7E-12 77.0 4.4 29 810-838 2-30 (54)
17 3pnw_C Tudor domain-containing 98.5 1.2E-07 4.2E-12 81.5 5.3 31 808-838 16-46 (77)
18 2d9t_A Tudor domain-containing 98.4 1.7E-07 5.8E-12 80.9 5.4 31 807-837 7-37 (78)
19 1mhn_A SurviVal motor neuron p 98.4 1.7E-07 5.9E-12 76.5 5.0 29 809-837 3-31 (59)
20 1g5v_A SurviVal motor neuron p 98.4 1.6E-07 5.6E-12 82.6 4.8 30 808-837 9-38 (88)
21 2equ_A PHD finger protein 20-l 98.1 3.4E-06 1.2E-10 71.7 5.8 31 807-838 7-37 (74)
22 4b9w_A TDRD1, tudor domain-con 97.9 1.1E-05 3.6E-10 82.2 5.7 117 562-711 79-199 (201)
23 2ldm_A Uncharacterized protein 97.0 3.7E-06 1.3E-10 72.4 0.0 30 808-838 5-34 (81)
24 4b9x_A TDRD1, tudor domain-con 97.7 0.00018 6.1E-09 74.5 12.3 69 640-711 127-199 (226)
25 3ntk_A Maternal protein tudor; 96.3 0.012 4.1E-07 57.9 9.4 60 640-703 107-166 (169)
26 3qii_A PHD finger protein 20; 95.5 0.013 4.5E-07 50.6 4.6 33 807-840 19-51 (85)
27 3p8d_A Medulloblastoma antigen 95.3 0.019 6.6E-07 47.5 4.8 31 808-839 5-35 (67)
28 2l8d_A Lamin-B receptor; DNA b 87.9 0.58 2E-05 38.0 4.4 34 808-841 8-41 (66)
29 2dig_A Lamin-B receptor; tudor 85.7 1.4 4.7E-05 35.9 5.5 35 808-842 11-45 (68)
30 2eqj_A Metal-response element- 84.3 1.4 4.7E-05 36.1 5.0 30 808-838 12-41 (66)
31 3h8z_A FragIle X mental retard 74.6 4.1 0.00014 38.0 5.5 75 760-837 14-92 (128)
32 1wgs_A MYST histone acetyltran 73.9 4.6 0.00016 37.9 5.8 27 808-835 11-37 (133)
33 2lcc_A AT-rich interactive dom 69.2 3.3 0.00011 35.0 3.3 28 809-836 5-34 (76)
34 2f5k_A MORF-related gene 15 is 63.0 7.2 0.00025 34.8 4.4 27 808-836 21-47 (102)
35 2e5p_A Protein PHF1, PHD finge 62.4 10 0.00035 31.0 4.7 30 808-838 8-37 (68)
36 2ro0_A Histone acetyltransfera 61.0 10 0.00035 33.2 4.9 27 808-836 22-48 (92)
37 2eko_A Histone acetyltransfera 60.5 6.3 0.00022 34.2 3.5 29 808-836 8-39 (87)
38 2rnz_A Histone acetyltransfera 55.0 11 0.00037 33.2 4.0 26 809-836 25-50 (94)
39 2e5q_A PHD finger protein 19; 54.1 16 0.00054 29.4 4.4 31 806-837 4-34 (63)
40 4hcz_A PHD finger protein 1; p 51.8 21 0.0007 28.4 4.7 29 809-838 3-31 (58)
41 3m9q_A Protein MALE-specific l 45.3 25 0.00087 31.2 4.9 28 808-836 18-49 (101)
42 3m9p_A MALE-specific lethal 3 43.0 27 0.00091 31.6 4.7 28 808-836 18-49 (110)
43 3mea_A SAGA-associated factor 41.7 20 0.0007 35.2 4.1 69 761-836 62-143 (180)
44 2qqr_A JMJC domain-containing 37.4 30 0.001 31.6 4.2 27 808-835 4-30 (118)
45 2bud_A Males-absent on the fir 31.8 39 0.0013 29.5 3.8 25 812-837 17-41 (92)
46 3s6w_A Tudor domain-containing 30.4 59 0.002 25.0 4.3 37 377-418 16-53 (54)
47 2xk0_A Polycomb protein PCL; t 29.1 95 0.0033 25.5 5.3 32 808-840 14-45 (69)
48 1mhn_A SurviVal motor neuron p 28.4 83 0.0028 24.7 5.0 38 377-419 18-56 (59)
49 2lrq_A Protein MRG15, NUA4 com 33.5 13 0.00044 32.1 0.0 27 808-836 11-37 (85)
50 1g5v_A SurviVal motor neuron p 23.3 1.2E+02 0.0043 26.0 5.5 38 377-419 25-63 (88)
51 3kdf_A Replication protein A 1 21.5 1.1E+02 0.0038 27.9 5.1 40 177-217 14-56 (121)
52 3pnw_C Tudor domain-containing 21.2 1.1E+02 0.0038 25.5 4.6 37 377-418 32-69 (77)
No 1
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.8e-63 Score=584.49 Aligned_cols=395 Identities=39% Similarity=0.634 Sum_probs=328.9
Q ss_pred ccceeEEEEEEEeCcEEEEEeCCCCCCCccceEEEEeecccCCCCC-CCCCCC-------cchhhHHHHHHHHHhhcCCc
Q 003128 377 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIG-NPRKDE-------KPAAYAREAREFLRTRLIGR 448 (845)
Q Consensus 377 ~~~~~~~V~~V~sgd~i~v~~~~~~~~~~~~e~~v~Lssi~~P~~~-~~~~~~-------~~e~~~~eareflR~~~iGk 448 (845)
.+.+.|+|++|++||||+|...+ +++++|+|++|+||++. +++++. .++||++|||||||++|+||
T Consensus 22 ~~~~~~~V~~V~DGDTi~v~~~~------g~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk 95 (570)
T 3bdl_A 22 DKQFVAKVMQVLNADAIVVKLNS------GDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGK 95 (570)
T ss_dssp CSEEEEEEEEEETTTEEEEECTT------SCEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTC
T ss_pred CcEEEEEEEEEccCCEEEEECCC------CCEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhCCC
Confidence 36799999999999999998532 24899999999999984 222211 57999999999999999999
Q ss_pred EEEEEEeeeecccccccccccCCCCCCCCCCCCCCccccccCCCCCCCCccccccee-eeeeeEEecCCCCCCCCCchhh
Q 003128 449 QVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRI-IDFGSIFLLSPIKGEGDDASAV 527 (845)
Q Consensus 449 ~V~~~vey~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 527 (845)
+|.|.++|.++.... .+ ..+... +.+++|++
T Consensus 96 ~V~~~~~~~~~~~~~--------------~~--------------------~~D~yg~R~la~v~~-------------- 127 (570)
T 3bdl_A 96 KVNVTVDYIRPASPA--------------TE--------------------TVPAFSERTCATVTI-------------- 127 (570)
T ss_dssp EEEEEEEEEESSCCC--------------SS--------------------CSSSSCCEEEEEEEE--------------
T ss_pred EEEEEEEeecccccc--------------cc--------------------ccCCCCceEEEEEcc--------------
Confidence 999999998764210 00 011112 66788887
Q ss_pred hccccCCCCCCcchhHHHHhcccceeeecC-CcccccHHHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCcccccc
Q 003128 528 AQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKAR 606 (845)
Q Consensus 528 ~~~~~~~~~~g~nv~e~lv~~G~a~v~~~r-~~~~~s~~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~ 606 (845)
+|.||+++||++|||+|.+|| ++++++..|+.|++||..|+++++|+|+.+++++.+++|++ .+.++++
T Consensus 128 ---------~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~-~~~~~~~ 197 (570)
T 3bdl_A 128 ---------GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADIS-GDTQKAK 197 (570)
T ss_dssp ---------TTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECT-TCHHHHH
T ss_pred ---------CCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCCCCCCCCCCCcceeeecC-CchHHHH
Confidence 468999999999999999987 55567888999999999999999999998776767799997 4788999
Q ss_pred ccccccccCCccceEEEEEecCCEEEEEecCCcceEEEEEeeecCCC----------CCcccHHHHHHHHHHHhcCceEE
Q 003128 607 DFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPG----------RNERYSNEALLLMRQKILQRDVE 676 (845)
Q Consensus 607 ~~l~~~~r~~~l~~~Ve~V~dGdtl~v~ip~~~~~i~v~LaGI~~P~----------~~e~~g~EA~~~l~~~ll~r~V~ 676 (845)
+|++++++.+++.|+|++|+|||||+|++|++++.++|||+|||||+ ..+|||.||+.|++++|++|+|+
T Consensus 198 ~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~V~ 277 (570)
T 3bdl_A 198 QFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVE 277 (570)
T ss_dssp HHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCCCCCCCCccccChHHHHHHHHHHHHhcCCeEE
Confidence 99999989999999999999999999999988999999999999997 36799999999999999999999
Q ss_pred EEEEEEcCCCcEEEEEEeCCcchhHHHHHcCCeeeeeccCCCCCcchHHHHHHHHHHHhcccCccccccCCccccc--cc
Q 003128 677 IEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSN--GA 754 (845)
Q Consensus 677 v~v~~~Dk~Gr~~g~v~~~~~~i~~~Ll~~GlA~v~~~~~~~~~~~~~~l~~AE~~AK~~k~GlW~~~~~~~~~~~--~~ 754 (845)
|++.+.|+|||++|+||+++.||++.||++|||+++ +...+..+...|.+||++||.+++|||+.+.++..+.. ..
T Consensus 278 ~~~~~~D~ygR~la~v~~~~~~v~~~Lv~~GlA~~~--~~~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~ 355 (570)
T 3bdl_A 278 VEVESMDKAGNFIGWLHIDGANLSVLLVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVL 355 (570)
T ss_dssp EEEEEECTTSCEEEEEEETTEEHHHHHHHTTSSEEC--GGGTTSTTHHHHHHHHHHHHHHTCGGGC----------CCCC
T ss_pred EEEEeEcCCCCEEEEEEECCEEHHHHHHHcCCcEEE--ecCCCcchHHHHHHHHHHHHHhCCCCCcccccccchhccccc
Confidence 999999999999999999999999999999999996 44445667788999999999999999998876532110 00
Q ss_pred ccccCcccEEEEEEEEEeeCCeEEEEecCc-hhHHHHHHHHHHhhccCCCCCCCCCCCCCCEEEEEECCCCcEEeEEEEe
Q 003128 755 AVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSE 833 (845)
Q Consensus 755 ~~~~~~g~~~~v~VseV~s~~~f~vQ~~~~-~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~ 833 (845)
......+++++|+||+|.+|++||||..+. .+|++||++|+.++.+..+.+..+.|++|++|+|+|+ |++||||+|++
T Consensus 356 ~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~ 434 (570)
T 3bdl_A 356 EEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEK 434 (570)
T ss_dssp CCSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECT-TSCEEEEEEEE
T ss_pred ccCCCCCcEEEEEEEEEECCCeEEEEECCcHHHHHHHHHHHHHHHhcCCCCCCCcCCCcCCEEEEEEC-CCCEEEEEEEE
Confidence 101234678999999999999999999974 6799999999998876544444578999999999999 99999999999
Q ss_pred ecCCC
Q 003128 834 LLPPL 838 (845)
Q Consensus 834 ~~~~~ 838 (845)
+.++.
T Consensus 435 v~~~~ 439 (570)
T 3bdl_A 435 VESPA 439 (570)
T ss_dssp EEETT
T ss_pred EcCCC
Confidence 87633
No 2
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.1e-63 Score=587.96 Aligned_cols=520 Identities=26% Similarity=0.348 Sum_probs=378.0
Q ss_pred CCCCCeEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCCCC----------CCChhHHHHHHHHHhHc
Q 003128 6 AAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGG----------LDEPFAWDSREFLRKLC 75 (845)
Q Consensus 6 ~~~~~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~~~~----------~~ep~a~eAre~Lr~ll 75 (845)
.+....+.|+|++|+|||||+|...+ .++++|||+||||||+.++++ .++|||++||+||+++|
T Consensus 19 ~~~~~~~~~~V~~V~DGDTi~v~~~~------g~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l 92 (570)
T 3bdl_A 19 SHMDKQFVAKVMQVLNADAIVVKLNS------GDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKL 92 (570)
T ss_dssp --CCSEEEEEEEEEETTTEEEEECTT------SCEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHH
T ss_pred ccCCcEEEEEEEEEccCCEEEEECCC------CCEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHh
Confidence 34567889999999999999998642 267899999999999964432 47999999999999999
Q ss_pred CCCeEEEEEcc---------ccCCCC-cEEEEEEeCCccHHHHHHHcCCeEEEEcCCCCCCChhhHHHHHHHHHHHHHhC
Q 003128 76 IGKEVTFRVDY---------AVPNIG-REFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQG 145 (845)
Q Consensus 76 ~Gk~V~v~~~~---------~~d~yg-R~~~~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k 145 (845)
+||+|.|.+++ .+|+|| |.+|+||++|.|||++||++|||++|+++....+++.+|++|.+||++||+++
T Consensus 93 ~gk~V~~~~~~~~~~~~~~~~~D~yg~R~la~v~~~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~ 172 (570)
T 3bdl_A 93 IGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNG 172 (570)
T ss_dssp TTCEEEEEEEEEESSCCCSSCSSSSCCEEEEEEEETTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEeeccccccccccCCCCceEEEEEccCCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhC
Confidence 99999999997 468999 99999999999999999999999999753111234567899999999999999
Q ss_pred CCccCCCCCCcccccccCCCCcCCCCchhhHHHhhhh-cCCCCcceEEEEecCCCEEEEEEcCCceEEEEEEeeeeCCCC
Q 003128 146 LGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDA-NKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAV 224 (845)
Q Consensus 146 ~GiWs~~~~~~~~~~r~i~~~~~~~~~~~~~~~~l~~-~~~~~~~~~Ve~V~dG~t~~v~~~~~~~~~~v~l~Gi~~P~~ 224 (845)
+|||+.++.+. ..++++.+. ..++++|++. ++++++.|+|++|.|||||+|+++++++.++|||+||||||+
T Consensus 173 ~GlW~~~~~~~-~~~~d~~~~------~~~~~~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~ 245 (570)
T 3bdl_A 173 KGLHSKKEVPI-HRVADISGD------TQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRG 245 (570)
T ss_dssp CGGGCCSCCCC-CCCEECTTC------HHHHHHHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCC
T ss_pred CCCCCCCCCCc-ceeeecCCc------hHHHHHHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCC
Confidence 99999865432 234666543 4788999994 579999999999999999999998889999999999999998
Q ss_pred CCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCceEEEEEeeecCCCCE
Q 003128 225 ARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNL 304 (845)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~~~eAk~f~~~~ll~r~V~v~~~~~Dk~g~~ 304 (845)
.+.. .| ...+.+|||.||+.|++++|++|+|+|.+.+.|+|||+
T Consensus 246 ~~~~-----------~~-------------------------~~~~~~~~g~eA~~~l~~~l~~r~V~~~~~~~D~ygR~ 289 (570)
T 3bdl_A 246 ARNL-----------PG-------------------------LVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNF 289 (570)
T ss_dssp CEEE-----------TT-------------------------EEECCCTTHHHHHHHHHHHHTTCEEEEEEEEECTTSCE
T ss_pred CCCC-----------CC-------------------------CccccChHHHHHHHHHHHHhcCCeEEEEEEeEcCCCCE
Confidence 7521 00 01247899999999999999999999999999999999
Q ss_pred EEEEEeCCCCChhhHHHHHHhcCcEEEeecccccchHHHHHHHHHHHHHHHHhcccCCCCCCCCCCC-------cccccc
Q 003128 305 IGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSN-------SKAIHD 377 (845)
Q Consensus 305 ~g~V~~~~g~~~~di~~~LL~~GlA~v~~~~~~~~~~~~~~~l~~AE~~Ak~~k~GiW~~~~~~~~~-------~~~~~~ 377 (845)
+|+||++ |. ||+++||++|||++| +...... ....|++||++||++++|||+.+.|+... ......
T Consensus 290 la~v~~~-~~---~v~~~Lv~~GlA~~~-~~~~~~~--~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~~~~~~~~ 362 (570)
T 3bdl_A 290 IGWLHID-GA---NLSVLLVEHALSKVH-FTAERSS--YYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSA 362 (570)
T ss_dssp EEEEEET-TE---EHHHHHHHTTSSEEC-GGGTTST--THHHHHHHHHHHHHHTCGGGC----------CCCCCCSSCCC
T ss_pred EEEEEEC-CE---EHHHHHHHcCCcEEE-ecCCCcc--hHHHHHHHHHHHHHhCCCCCcccccccchhcccccccCCCCC
Confidence 9999997 43 599999999999998 3322222 23589999999999999999998776211 011113
Q ss_pred cceeEEEEEEEeCcEEEEEeCCCCCCCccceEEEEeecccCCCCCCCCCCCcchhhHHHHHHHHHhhcCCcEEEEEEeee
Q 003128 378 QNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYS 457 (845)
Q Consensus 378 ~~~~~~V~~V~sgd~i~v~~~~~~~~~~~~e~~v~Lssi~~P~~~~~~~~~~~e~~~~eareflR~~~iGk~V~~~vey~ 457 (845)
..+...|+.|.+...|.|+..+.. . .-+-..-+-.+|+.+.
T Consensus 363 ~~~~V~Vt~V~sp~~Fyvq~~~~~------~--------------------~l~~l~~~l~~~~~~~------------- 403 (570)
T 3bdl_A 363 SYKPVFVTEITDDLHFYVQDVETG------T--------------------QLEKLMENMRNDIASH------------- 403 (570)
T ss_dssp CCEEEEEEEECTTSEEEEEEGGGH------H--------------------HHHHHHHHHHHHHHHS-------------
T ss_pred cEEEEEEEEEECCCeEEEEECCcH------H--------------------HHHHHHHHHHHHHhcC-------------
Confidence 456889999999999998873210 0 0011111122222110
Q ss_pred ecccccccccccCCCCCCCCCCCCCCccccccCCCCCCCCcccccceeeeeeeEEecCCCCCCCCCchhhhccccCCCCC
Q 003128 458 RKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPA 537 (845)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (845)
.+. .+ . . ...-|.+++
T Consensus 404 --~~l---------------~~----------------~----~---~~~~G~~c~------------------------ 419 (570)
T 3bdl_A 404 --PPV---------------EG----------------S----Y---APRRGEFCI------------------------ 419 (570)
T ss_dssp --CCC---------------TT----------------C----C---CCCTTCEEE------------------------
T ss_pred --CCC---------------CC----------------C----c---CCCcCCEEE------------------------
Confidence 000 00 0 0 000111111
Q ss_pred CcchhHHHHhcccceeeecCCcccccHHHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCccccccccccccccCCc
Q 003128 538 GVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRR 617 (845)
Q Consensus 538 g~nv~e~lv~~G~a~v~~~r~~~~~s~~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~~~l~~~~r~~~ 617 (845)
.... +..|||+.|.... . .....+.|+|| ||.+ .++.. ..++
T Consensus 420 ----------------a~~~----d~~wyRa~I~~v~----------~-~~~~~V~fvDy--Gn~e----~v~~~-~Lr~ 461 (570)
T 3bdl_A 420 ----------------AKFV----DGEWYRARVEKVE----------S-PAKIHVFYIDY--GNRE----VLPST-RLGT 461 (570)
T ss_dssp ----------------EECT----TSCEEEEEEEEEE----------E-TTEEEEEETTT--CCEE----EECGG-GEEC
T ss_pred ----------------EEEC----CCCEEEEEEEEEc----------C-CCeEEEEEEeC--CCeE----EEEHH-HCcc
Confidence 1221 2458887766311 1 12234679999 7876 56655 5566
Q ss_pred cceEEEEEecCCEEEE-EecCCcceEEEEEeeecCCCCCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC-
Q 003128 618 IPAVVEYVLSGHRFKV-LIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES- 695 (845)
Q Consensus 618 l~~~Ve~V~dGdtl~v-~ip~~~~~i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~~- 695 (845)
|+.. |.. .+|.+. +.|+|+||.+|. ...|..+|..+|++++.++.+.+.|...+ .|.+.+.|+..
T Consensus 462 l~~~---------f~~l~lP~qA--~~c~La~v~pp~-~~~w~~ea~~~f~~lv~~k~l~~~V~~~~-~~~~~V~L~~~~ 528 (570)
T 3bdl_A 462 LSPA---------FSTRVLPAQA--TEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNTQCLLNVEHLS-AGCPHVTLQFAD 528 (570)
T ss_dssp CCGG---------GSTTTSCCCC--EEEEETTEECCS-SHHHHHHHHHHHHHHHTTEEEEEEEEECC-SSSCEEEEEETT
T ss_pred CCHH---------HhcCCCCcce--EEEEECCeEcCC-CCCCcHHHHHHHHHHhCCCEEEEEEEEEe-CCcEEEEEEECC
Confidence 6532 111 237754 789999999886 67899999999999999999999999887 57888999985
Q ss_pred -CcchhHHHHHcCCeeeeeccCCCCCcchHHHHHHHHHHHh
Q 003128 696 -RTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKS 735 (845)
Q Consensus 696 -~~~i~~~Ll~~GlA~v~~~~~~~~~~~~~~l~~AE~~AK~ 735 (845)
+.+|+..|+++|||...............+|+++|+.||.
T Consensus 529 ~~~sIn~~Lv~~G~A~~~~~~~~~~~~~~~~l~~~q~~Ak~ 569 (570)
T 3bdl_A 529 SKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKS 569 (570)
T ss_dssp TCCBHHHHHHHTTSSEECCCCSGGGHHHHHHHHHHHHTC--
T ss_pred CCccHHHHHHHCCCeEcchhhhhhHHHHHHHHHHHHHHHhc
Confidence 5789999999999998521111112345778888888875
No 3
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=99.95 E-value=1.9e-27 Score=230.74 Aligned_cols=134 Identities=22% Similarity=0.224 Sum_probs=112.5
Q ss_pred CCCCCCeEEEEEeEEccCCEEEEeeCCCCCCCCCCeeEEEEEeecCCCCCCCCCCCChhHHHHHHHHHhHcC-CCeEEEE
Q 003128 5 AAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCI-GKEVTFR 83 (845)
Q Consensus 5 ~~~~~~~~~~~V~~V~dGDTi~v~~~~~~~~g~~~~~~vrL~gIdaPe~~~~~~~~ep~a~eAre~Lr~ll~-Gk~V~v~ 83 (845)
++..-..+.++|++|+|||||.|..++ ...+|||+||||||+ .||||.+|++||+++|. |+.|.|.
T Consensus 3 ~~~~~~~~~~~V~~V~DGDTi~v~~~g-------~~~~VRL~gIDaPE~------~q~~g~~A~~~l~~ll~~g~~V~~~ 69 (143)
T 4eqp_A 3 STKKLHKEPATLIKAIDGDTVKLMYKG-------QPMTFRLLLVDTPEF------NEKYGPEASAFTKKMVENAKKDEVE 69 (143)
T ss_dssp ----CCEEEEEEEEECSSSEEEEEETT-------EEEEEEETTEECCCT------TSTTHHHHHHHHHHHHHHCSCEEEE
T ss_pred cCCCCceeeEEEEEEECCCEEEEEeCC-------cEEEEEEEeecCCCc------CCchHHHHHHHHHHHHhcCCeEEEE
Confidence 344567789999999999999999752 568999999999997 58999999999999998 8999999
Q ss_pred Ec--cccCCCCcEEEEEEeCCccHHHHHHHcCCeEEEEcCCCCCCChhhHHHHHHHHHHHHHhCCCccCCCCC
Q 003128 84 VD--YAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPG 154 (845)
Q Consensus 84 ~~--~~~d~ygR~~~~V~~~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~~~ 154 (845)
++ ...|+|||.+|+||++|.|||++||++|||+++..+. .+..+.+.|.+||++||++++|||+..++
T Consensus 70 ~d~~~~~D~ygR~la~v~~~g~~vn~~lv~~GlA~v~~~~~---~~~~~~~~~~~aE~~Ar~~k~GlW~~~~p 139 (143)
T 4eqp_A 70 FDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYK---GNNTHEQLLRKAEAQAKKEKLNIWSEDNA 139 (143)
T ss_dssp CCSSCSBCTTSCEEEEEEETTEEHHHHHHHTTSSEECCCCT---TSCTTHHHHHHHHHHHHHTTCGGGC----
T ss_pred EccccccCCCCCEEEEEEECCchHHHHHHHCCCeEEEeecC---CCcchHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 86 3579999999999999999999999999999975543 22356788999999999999999998654
No 4
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=99.88 E-value=1.2e-22 Score=196.95 Aligned_cols=129 Identities=26% Similarity=0.401 Sum_probs=109.6
Q ss_pred CccceEEEEEecCCEEEEEecCCcceEEEEEeeecCCCCCcccHHHHHHHHHHHhc-CceEEEEEE---EEcCCCcEEEE
Q 003128 616 RRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKIL-QRDVEIEVE---TVDRTGTFLGS 691 (845)
Q Consensus 616 ~~l~~~Ve~V~dGdtl~v~ip~~~~~i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll-~r~V~v~v~---~~Dk~Gr~~g~ 691 (845)
....++|.+|+|||||+|..+ +..++|||+|||+|+..+|||.+|+.|++++|. ++.|+|+++ ..|+|||++++
T Consensus 8 ~~~~~~V~~V~DGDTi~v~~~--g~~~~VRL~gIDaPE~~q~~g~~A~~~l~~ll~~g~~V~~~~d~~~~~D~ygR~la~ 85 (143)
T 4eqp_A 8 HKEPATLIKAIDGDTVKLMYK--GQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKDEVEFDKGQRTDKYGRGLAY 85 (143)
T ss_dssp CEEEEEEEEECSSSEEEEEET--TEEEEEEETTEECCCTTSTTHHHHHHHHHHHHHHCSCEEEECCSSCSBCTTSCEEEE
T ss_pred ceeeEEEEEEECCCEEEEEeC--CcEEEEEEEeecCCCcCCchHHHHHHHHHHHHhcCCeEEEEEccccccCCCCCEEEE
Confidence 345799999999999999864 456899999999999999999999999999998 699999984 68999999999
Q ss_pred EEeCCcchhHHHHHcCCeeeeeccCCCCCcchHHHHHHHHHHHhcccCccccccCC
Q 003128 692 LWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEG 747 (845)
Q Consensus 692 v~~~~~~i~~~Ll~~GlA~v~~~~~~~~~~~~~~l~~AE~~AK~~k~GlW~~~~~~ 747 (845)
||.++.+|+..||++|||+++..+.. ...+...|.+||++||.+++|||+...|+
T Consensus 86 v~~~g~~vn~~lv~~GlA~v~~~~~~-~~~~~~~~~~aE~~Ar~~k~GlW~~~~p~ 140 (143)
T 4eqp_A 86 IYADGKMVNEALVRQGLAKVAYVYKG-NNTHEQLLRKAEAQAKKEKLNIWSEDNAD 140 (143)
T ss_dssp EEETTEEHHHHHHHTTSSEECCCCTT-SCTTHHHHHHHHHHHHHTTCGGGC-----
T ss_pred EEECCchHHHHHHHCCCeEEEeecCC-CcchHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999999999998533332 34566789999999999999999987654
No 5
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=2.4e-14 Score=147.78 Aligned_cols=133 Identities=17% Similarity=0.299 Sum_probs=107.5
Q ss_pred CCCeEEEEEeEEccCCEEEEeeCCCCC-----------------CCCCCeeEEEEEeecCCCCCCCCCCCChhHHHHHHH
Q 003128 8 GGGWYRARVKAVPSGDSLVITALSNPN-----------------PGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREF 70 (845)
Q Consensus 8 ~~~~~~~~V~~V~dGDTi~v~~~~~~~-----------------~g~~~~~~vrL~gIdaPe~~~~~~~~ep~a~eAre~ 70 (845)
.+.+++|+|.+|.+ |++.|..-+-+. .-|+...++||++|++|+ .++|+.+|+++
T Consensus 65 d~~wyRa~V~~v~~-~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~-------~~~w~~eA~~~ 136 (218)
T 2wac_A 65 DNQWYRAKVERVQG-SNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT-------DNEDKEEALRA 136 (218)
T ss_dssp TCCEEEEEEEEEET-TEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-------SHHHHHHHHHH
T ss_pred CCeEEEEEEEEecC-CeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCC-------CcchHHHHHHH
Confidence 57899999999987 888877432100 023466789999999998 47999999999
Q ss_pred HHhHcCCCeEEEEEccccCCCCc-EEEEEEe--CCccHHHHHHHcCCeEEEEcCCCCCCChhhHHHHHHHHHHHHHhCCC
Q 003128 71 LRKLCIGKEVTFRVDYAVPNIGR-EFGTVIL--GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLG 147 (845)
Q Consensus 71 Lr~ll~Gk~V~v~~~~~~d~ygR-~~~~V~~--~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~G 147 (845)
|++++.|+.|.+.+.. .| +|| .+++++. ++.+||+.||++|||+++.... .....+...|.+||++||++++|
T Consensus 137 l~~lv~~k~v~~~v~~-~d-~g~~~~V~L~~~~~~~~in~~Lv~~G~A~~~~~~~--~~~~~~~~~~~~~e~~Ar~~r~G 212 (218)
T 2wac_A 137 FSEDVLNHKVQLNVEL-KV-TGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGE--RKLKELVDQYKAAQEAARVAHLA 212 (218)
T ss_dssp HHHHHBTCEEEEEEEE-CC-TTSCEEEEEECTTTCCBHHHHHHHTTSSEECCCCC--GGGHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHhcCCEEEEEEEE-Ec-CCceEEEEEEeCCCCccHHHHHHHCCCcccccccc--hhHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999874 56 899 9999997 5889999999999999974321 11234567899999999999999
Q ss_pred ccCCC
Q 003128 148 RWSKV 152 (845)
Q Consensus 148 iWs~~ 152 (845)
||+..
T Consensus 213 lW~~g 217 (218)
T 2wac_A 213 IWKYG 217 (218)
T ss_dssp GGTTC
T ss_pred CcccC
Confidence 99853
No 6
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=1.6e-13 Score=141.75 Aligned_cols=103 Identities=20% Similarity=0.299 Sum_probs=87.2
Q ss_pred ceEEEEEeeecCCCCCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCc-EEEEEEeC--CcchhHHHHHcCCeeeeeccC
Q 003128 640 CSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGT-FLGSLWES--RTNVAVILLEAGLAKLQTSFG 716 (845)
Q Consensus 640 ~~i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr-~~g~v~~~--~~~i~~~Ll~~GlA~v~~~~~ 716 (845)
..++|+|+||++|+ .++|+.+|..+|++++.++.|.+.+...| +|+ .++.|+.. +.+|+..||++|||++++...
T Consensus 112 ~a~~~~Lagv~~p~-~~~w~~eA~~~l~~lv~~k~v~~~v~~~d-~g~~~~V~L~~~~~~~~in~~Lv~~G~A~~~~~~~ 189 (218)
T 2wac_A 112 YATEYALALVALPT-DNEDKEEALRAFSEDVLNHKVQLNVELKV-TGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGE 189 (218)
T ss_dssp SEEEEEETTEECCS-SHHHHHHHHHHHHHHHBTCEEEEEEEECC-TTSCEEEEEECTTTCCBHHHHHHHTTSSEECCCCC
T ss_pred ceeEEEECCEECCC-CcchHHHHHHHHHHHhcCCEEEEEEEEEc-CCceEEEEEEeCCCCccHHHHHHHCCCcccccccc
Confidence 45789999999997 78999999999999999999999999998 899 99999984 789999999999999962111
Q ss_pred CCCCcchHHHHHHHHHHHhcccCccccc
Q 003128 717 SDRIPDSHLLEQAEKSAKSQKLKIWENY 744 (845)
Q Consensus 717 ~~~~~~~~~l~~AE~~AK~~k~GlW~~~ 744 (845)
.........|.++|++||.+|+|||+..
T Consensus 190 ~~~~~~~~~~~~~e~~Ar~~r~GlW~~g 217 (218)
T 2wac_A 190 RKLKELVDQYKAAQEAARVAHLAIWKYG 217 (218)
T ss_dssp GGGHHHHHHHHHHHHHHHHTTCGGGTTC
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 1011234679999999999999999864
No 7
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=99.47 E-value=2.4e-13 Score=139.14 Aligned_cols=81 Identities=35% Similarity=0.554 Sum_probs=70.1
Q ss_pred ccCcccEEEEEEEEEeeCCeEEEEecCc---hhHHHHHHHHHHhhccCCCCCCCCCCCCCCEEEEEECCCCcEEeEEEEe
Q 003128 757 EGKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSE 833 (845)
Q Consensus 757 ~~~~g~~~~v~VseV~s~~~f~vQ~~~~---~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~ 833 (845)
++..+++++|+||+|.+|++||||..+. .+|++||++|+.|+.+..+ ..+.|++|++|+|+|++||.||||+|++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~~--~~~~~~~G~~c~a~~~~d~~wyRa~V~~ 89 (201)
T 4b9w_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPP--NGFKAEIGRPCCAFFSGDGNWYRALVKE 89 (201)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHHHSSSC--CCCCCCTTCEEEEEETTTTEEEEEEEEE
T ss_pred EcCCCCEEEEEEEEEeCCCEEEEEECCCchHHHHHHHHHHHHHHHhcCCC--CCCCCCCCCEEEEEECCCCeEEEEEEEE
Confidence 3566899999999999999999999763 5899999999999976433 2467999999999999999999999999
Q ss_pred ecCCCc
Q 003128 834 LLPPLQ 839 (845)
Q Consensus 834 ~~~~~~ 839 (845)
+.+++.
T Consensus 90 ~~~~~~ 95 (201)
T 4b9w_A 90 ILPSGN 95 (201)
T ss_dssp ECTTSC
T ss_pred ECCCCe
Confidence 876654
No 8
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=99.44 E-value=4e-13 Score=139.92 Aligned_cols=81 Identities=35% Similarity=0.554 Sum_probs=69.4
Q ss_pred ccCcccEEEEEEEEEeeCCeEEEEecCc---hhHHHHHHHHHHhhccCCCCCCCCCCCCCCEEEEEECCCCcEEeEEEEe
Q 003128 757 EGKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSE 833 (845)
Q Consensus 757 ~~~~g~~~~v~VseV~s~~~f~vQ~~~~---~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~ 833 (845)
++..+++++|+||+|.+|++||||..+. .+|+.||++|..|+.+..+ ..+.|++|++|+|+|++||.||||+|++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~--~~~~~~~G~~c~a~~~~d~~WyRa~V~~ 89 (226)
T 4b9x_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPP--NGFKAEIGRPCCAFFSGDGNWYRALVKE 89 (226)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHTSSSCC----CCCCTTCEEEEEETTTTEEEEEEEEE
T ss_pred EcCCCCEEEEEEEEEeCCCEEEEEEcCCchHHHHHHHHHHHHHHHhcCCC--CCCCCCCCCEEEEEECCCCeEEEEEEEE
Confidence 3566899999999999999999999763 5899999999999976433 2467999999999999999999999999
Q ss_pred ecCCCc
Q 003128 834 LLPPLQ 839 (845)
Q Consensus 834 ~~~~~~ 839 (845)
+.+++.
T Consensus 90 ~~~~~~ 95 (226)
T 4b9x_A 90 ILPSGN 95 (226)
T ss_dssp ECSSSE
T ss_pred ECCCCe
Confidence 877654
No 9
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=99.39 E-value=1.2e-12 Score=130.27 Aligned_cols=74 Identities=27% Similarity=0.395 Sum_probs=64.4
Q ss_pred cEEEEEEEEEeeCCeEEEEecCc-hhHHHHHHHHHHhhccCCCCCCCCCCCCCCEEEEEECCCCcEEeEEEEeecCCC
Q 003128 762 EVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSELLPPL 838 (845)
Q Consensus 762 ~~~~v~VseV~s~~~f~vQ~~~~-~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~ 838 (845)
+.++|+||+|.+|++||+|..++ ..|++||++|+.++... | ....|++|++|+|+|++||+||||+|+++.+++
T Consensus 2 e~~~V~Vt~v~~p~~F~vq~~~~~~~L~~L~~~l~~~~~~~-p--~~~~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~ 76 (169)
T 3ntk_A 2 ELHNCVVVQFDGPMSFYVQMESDVPALEQMTDKLLDAEQDL-P--AFSDLKEGALCVAQFPEDEVFYRAQIRKVLDDG 76 (169)
T ss_dssp CCEEEEEEEEEETTEEEEEEGGGHHHHHHHHHHHHHHGGGC-C--BCCCCCTTCEEEEEETTTTEEEEEEEEEECSTT
T ss_pred cceEEEEEEEeCCCEEEEEECCCHHHHHHHHHHHHHHHhcC-C--CCCCCCCCCEEEEEECCCCcEEEEEEEEECCCC
Confidence 46899999999999999999865 78999999999987532 2 235799999999999999999999999998765
No 10
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.31 E-value=7.3e-13 Score=139.58 Aligned_cols=135 Identities=21% Similarity=0.298 Sum_probs=22.3
Q ss_pred CCCeEEEEEeEEccCCEEEEeeCCCCC-------------------CCCCCeeEEEEEeecCCCCCCCCCCCChhHHHHH
Q 003128 8 GGGWYRARVKAVPSGDSLVITALSNPN-------------------PGPPREKTLTLSSIITPRLARRGGLDEPFAWDSR 68 (845)
Q Consensus 8 ~~~~~~~~V~~V~dGDTi~v~~~~~~~-------------------~g~~~~~~vrL~gIdaPe~~~~~~~~ep~a~eAr 68 (845)
.+.+++|+|.+|.+++++.|..-+-|. .-|+...++||++|++|+. ..|+.+|.
T Consensus 78 d~~wyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~~-------~~~~~eA~ 150 (246)
T 2hqx_A 78 DGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQD-------DDARTDAV 150 (246)
T ss_dssp TSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC----------------------------
T ss_pred CCCEEEEEEEEEcCCCeEEEEEEeCCCeEEEeHHHhhcCCHhHcCCCCchhhhhhhhhceecCCC-------ccchHHHH
Confidence 568999999999988898886432000 0145667889999999873 46999999
Q ss_pred HHHHhHcCCCeEEEEEccccCCCCcEEEEEEe--CCccHHHHHHHcCCeEEEEcCCCCCCChhhHHHHHHHHHHHHHhCC
Q 003128 69 EFLRKLCIGKEVTFRVDYAVPNIGREFGTVIL--GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGL 146 (845)
Q Consensus 69 e~Lr~ll~Gk~V~v~~~~~~d~ygR~~~~V~~--~g~nv~~~Lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~ 146 (845)
++|.+++.|+.|.+.++. ++ .||.+++|+. ++.+||.+||++|||+++..+.. ....+...|.+||++||++++
T Consensus 151 ~~l~~lv~~k~v~~~v~~-~d-~g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~~--~~~~~~~~~~~~e~~Ar~~r~ 226 (246)
T 2hqx_A 151 DSVVRDIQNTQCLLNVEH-LS-AGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEK--QFQKVITEYLNAQESAKSARL 226 (246)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCEEEEEEEE-ec-CCeEEEEEEeCCCCccHHHHHHHCCCEEecccchh--hHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999998874 34 4888888888 57899999999999999876531 122455789999999999999
Q ss_pred CccCCCC
Q 003128 147 GRWSKVP 153 (845)
Q Consensus 147 GiWs~~~ 153 (845)
|||+..+
T Consensus 227 GlW~~gd 233 (246)
T 2hqx_A 227 NLWRYGD 233 (246)
T ss_dssp -------
T ss_pred CcccCCC
Confidence 9997653
No 11
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.20 E-value=4.5e-12 Score=133.54 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=1.0
Q ss_pred ceEEEEEeeecCCCCCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEe--CCcchhHHHHHcCCeeeeeccCC
Q 003128 640 CSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWE--SRTNVAVILLEAGLAKLQTSFGS 717 (845)
Q Consensus 640 ~~i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~--~~~~i~~~Ll~~GlA~v~~~~~~ 717 (845)
..+.|+|+||++|+ .+.|+.+|..++.++++++.|.+.+...| .|+.+++|+. ++.+|+..||++|||++++.+..
T Consensus 128 ~a~~~~L~~v~~p~-~~~~~~eA~~~l~~lv~~k~v~~~v~~~d-~g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~~ 205 (246)
T 2hqx_A 128 QATEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNTQCLLNVEHLS-AGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEK 205 (246)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred hhhhhhhhceecCC-CccchHHHHHHHHHHhcCCEEEEEEEEec-CCeEEEEEEeCCCCccHHHHHHHCCCEEecccchh
Confidence 45789999999987 45799999999999999999999998877 4888888987 46799999999999999753322
Q ss_pred CCCcchHHHHHHHHHHHhcccCccccccCC
Q 003128 718 DRIPDSHLLEQAEKSAKSQKLKIWENYVEG 747 (845)
Q Consensus 718 ~~~~~~~~l~~AE~~AK~~k~GlW~~~~~~ 747 (845)
........|.++|++||++|+|||+..++.
T Consensus 206 ~~~~~~~~~~~~e~~Ar~~r~GlW~~gd~~ 235 (246)
T 2hqx_A 206 QFQKVITEYLNAQESAKSARLNLWRYGDFR 235 (246)
T ss_dssp ------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHhccCcccCCCCC
Confidence 222345679999999999999999876554
No 12
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=99.01 E-value=5.6e-10 Score=100.06 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHHhhccCCCCCCCCCCCCCCEEEEEECCCCcEEeEEEEeecCCC
Q 003128 784 DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSELLPPL 838 (845)
Q Consensus 784 ~~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~ 838 (845)
+.+|++||++|++||.+..+ ..+.|++|++|+|+|++|+.||||+|+++.++.
T Consensus 4 s~~Le~Lm~~m~~~y~~~~~--~~~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~ 56 (94)
T 3fdr_A 4 SLQLDKLVNEMTQHYENSVP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTLENG 56 (94)
T ss_dssp -CHHHHHHHHHHHHHTTCCC--CCCCCCTTCEEEEEETTTTEEEEEEEEEECTTS
T ss_pred HHHHHHHHHHHHHHHhcCCC--CCCCCCCCCEEEEEECCCCeEEEEEEEEECCCC
Confidence 36899999999999987543 347899999999999999999999999997643
No 13
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=1.9e-09 Score=93.11 Aligned_cols=48 Identities=6% Similarity=0.087 Sum_probs=37.9
Q ss_pred HHHHHHhhccCCCCCCCCCCCCCCEEEEEECCCCcEEeEEEEeecCCCcc
Q 003128 791 QQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSELLPPLQF 840 (845)
Q Consensus 791 ~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~~~ 840 (845)
++.|..++.++.+. +..+|+|++|+|+|++||+||||+|+++.+++++
T Consensus 5 ~e~M~~~~~~s~~~--~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~v 52 (85)
T 2eqk_A 5 SSGMIAAYENSKWE--PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLV 52 (85)
T ss_dssp CCCHHHHHHHSCCC--CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEE
T ss_pred HHHHHHHhccCCCc--ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeE
Confidence 34445555543333 5789999999999999999999999999998874
No 14
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=98.80 E-value=4.7e-09 Score=96.84 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHhhccCCCCCCCCCCCCCCEEEEEECCCCcEEeEEEEeecCCC
Q 003128 785 QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMVSELLPPL 838 (845)
Q Consensus 785 ~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~ 838 (845)
.+|++||++|++|+.+..+ ..+.|++|++|+|+|++|++||||+|+++.++.
T Consensus 10 ~~l~~L~~~m~~~y~~~~~--~~~~~~~G~~c~a~~~~d~~wyRA~V~~~~~~~ 61 (110)
T 2diq_A 10 LQLDKLVNEMTQHYENSVP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTLENG 61 (110)
T ss_dssp HHHHHHHHHHHHHHTTSCC--CCCCCCTTCEEEECCTTTCSCEEEEECCCCSSS
T ss_pred HHHHHHHHHHHHHHccCCC--CCCCCCCCCEEEEEECCCCeEEEEEEEEECCCC
Confidence 6899999999999986432 347899999999999999999999999998654
No 15
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=98.64 E-value=2.6e-08 Score=82.71 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=29.2
Q ss_pred CCCCCCCCEEEEEECCCCcEEeEEEEeecCCC
Q 003128 807 AFNPKKGEIVLAQFSADNSWNRAMVSELLPPL 838 (845)
Q Consensus 807 ~~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~ 838 (845)
.+.|++||+|+|+||+||+||||+|+++.++.
T Consensus 6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~ 37 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDEEN 37 (64)
T ss_dssp SSCCCTTCEEEEECTTTSSEEEEEEEEEETTT
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEEcCCC
Confidence 47899999999999999999999999998753
No 16
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=98.49 E-value=7.9e-08 Score=77.02 Aligned_cols=29 Identities=31% Similarity=0.310 Sum_probs=24.8
Q ss_pred CCCCCEEEEEECCCCcEEeEEEEeecCCC
Q 003128 810 PKKGEIVLAQFSADNSWNRAMVSELLPPL 838 (845)
Q Consensus 810 pk~G~~c~A~fs~D~~WYRAkV~~~~~~~ 838 (845)
-++|++|+|+||+||+||||+|+++.+++
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~ 30 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSG 30 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCC
Confidence 47999999999999999999999987543
No 17
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=98.47 E-value=1.2e-07 Score=81.51 Aligned_cols=31 Identities=29% Similarity=0.231 Sum_probs=28.2
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeecCCC
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELLPPL 838 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~ 838 (845)
+.|++|++|+|+||+||+||||+|+++..++
T Consensus 16 ~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~ 46 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDNKFYRAEVEALHSSG 46 (77)
T ss_dssp TTCCTTCEEEEEETTTTEEEEEEEEEECTTS
T ss_pred CCCCcCCEEEEEECCCCCEEEEEEEEEeCCC
Confidence 5699999999999999999999999997654
No 18
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=98.44 E-value=1.7e-07 Score=80.91 Aligned_cols=31 Identities=29% Similarity=0.283 Sum_probs=28.6
Q ss_pred CCCCCCCCEEEEEECCCCcEEeEEEEeecCC
Q 003128 807 AFNPKKGEIVLAQFSADNSWNRAMVSELLPP 837 (845)
Q Consensus 807 ~~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~ 837 (845)
.+.|++|++|+|+|++|++||||+|+++..+
T Consensus 7 ~~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~ 37 (78)
T 2d9t_A 7 GKVWKPGDECFALYWEDNKFYRAEVEALHSS 37 (78)
T ss_dssp CCCCCTTCEEEEECTTTCCEEEEEEEEECSS
T ss_pred ccCCCcCCEEEEEECCCCCEEEEEEEEEeCC
Confidence 4789999999999999999999999999864
No 19
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=98.43 E-value=1.7e-07 Score=76.48 Aligned_cols=29 Identities=21% Similarity=0.121 Sum_probs=26.7
Q ss_pred CCCCCCEEEEEECCCCcEEeEEEEeecCC
Q 003128 809 NPKKGEIVLAQFSADNSWNRAMVSELLPP 837 (845)
Q Consensus 809 ~pk~G~~c~A~fs~D~~WYRAkV~~~~~~ 837 (845)
..++|++|+|+||+||+||||+|+++.++
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~ 31 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFK 31 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETT
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCC
Confidence 47899999999999999999999999764
No 20
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=98.42 E-value=1.6e-07 Score=82.63 Aligned_cols=30 Identities=20% Similarity=0.088 Sum_probs=27.9
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeecCC
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELLPP 837 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~ 837 (845)
..|++|++|+|+||+||+||||+|+++.++
T Consensus 9 ~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~ 38 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDGCIYPATIASIDFK 38 (88)
T ss_dssp CCCCSSCEEEEECTTTCCEEEEEEEEEETT
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEecCC
Confidence 579999999999999999999999999864
No 21
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.10 E-value=3.4e-06 Score=71.72 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=28.2
Q ss_pred CCCCCCCCEEEEEECCCCcEEeEEEEeecCCC
Q 003128 807 AFNPKKGEIVLAQFSADNSWNRAMVSELLPPL 838 (845)
Q Consensus 807 ~~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~ 838 (845)
.+.+++||.|+|+|| ||.||||+|+++.++.
T Consensus 7 ~~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~~ 37 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DCRYYPAKIEAINKEG 37 (74)
T ss_dssp CCCCCTTCEEEEECS-SSSEEEEEEEEESTTS
T ss_pred CCCCCCCCEEEEECC-CCCEEEEEEEEECCCC
Confidence 467999999999999 9999999999998754
No 22
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=97.87 E-value=1.1e-05 Score=82.24 Aligned_cols=117 Identities=16% Similarity=0.222 Sum_probs=83.8
Q ss_pred ccHHHHHHHHHHHHHHhcCCCccCCCCCCceEEEeCCCCccccccccccccccCCccceEEEEEecCCEEEEEecCCcce
Q 003128 562 RSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCS 641 (845)
Q Consensus 562 ~s~~y~~Lv~ae~~A~~~~~G~~~~~~~~~~~~~D~~~~n~~~~~~~l~~~~r~~~l~~~Ve~V~dGdtl~v~ip~~~~~ 641 (845)
+..|||+.|.. +.. .....+.|+|| ||.+ .++.. ..++|+.. | ..+|.++
T Consensus 79 d~~wyRa~V~~----------~~~-~~~~~V~~vDy--G~~~----~v~~~-~l~~l~~~---------f-~~lP~qA-- 128 (201)
T 4b9w_A 79 DGNWYRALVKE----------ILP-SGNVKVHFVDY--GNVE----EVTTD-QLQAILPQ---------F-LLLPFQG-- 128 (201)
T ss_dssp TTEEEEEEEEE----------ECT-TSCEEEEETTT--CCEE----EECGG-GEEECCGG---------G-GSSCBCC--
T ss_pred CCeEEEEEEEE----------ECC-CCeEEEEEEcc--CCEE----EEEHH-HhccChHh---------H-cccchhh--
Confidence 35689877652 111 12234789999 7876 56554 55555431 1 2357744
Q ss_pred EEEEEeeecCCCCCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC----CcchhHHHHHcCCeee
Q 003128 642 IAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES----RTNVAVILLEAGLAKL 711 (845)
Q Consensus 642 i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~~----~~~i~~~Ll~~GlA~v 711 (845)
++|+|+||.++ +..|..+|..+|++++.++.+.+.|.+.+. +.+.+.|+.. +.+|+..|+++|||..
T Consensus 129 ~~c~L~~v~p~--~~~w~~ea~~~f~~l~~~k~l~~~V~~~~~-~~~~V~L~d~~~~~~~~I~~~Lv~~gLA~k 199 (201)
T 4b9w_A 129 MQCWLVDIQPP--NKHWTKEATARFQACVVGLKLQARVVEITA-NGVGVELTDLSTPYPKIISDVLIREQLVLR 199 (201)
T ss_dssp EEEEESSEECS--SSSCCHHHHHHHHHHHTTCCEEEEEEEEET-TEEEEEEEECSSSSCEEHHHHHHHTTSSEE
T ss_pred EEEEEcCEEcC--CCCCCHHHHHHHHHHHCCCEEEEEEEEEeC-CEEEEEEEECCCCCccchHHHHHHCcCeec
Confidence 78999999965 467999999999999999999999988754 3466777763 3679999999999953
No 23
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=96.95 E-value=3.7e-06 Score=72.37 Aligned_cols=30 Identities=27% Similarity=0.194 Sum_probs=26.9
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeecCCC
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELLPPL 838 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~ 838 (845)
..+++||.|+|+|| |+.||||+|+++..+.
T Consensus 5 ~~~kvGd~clAkws-Dg~wY~A~I~~v~~~~ 34 (81)
T 2ldm_A 5 SEFQINEQVLASWS-DSRFYPAKVTAVNKDG 34 (81)
Confidence 56889999999999 9999999999997654
No 24
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=97.73 E-value=0.00018 Score=74.48 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=58.6
Q ss_pred ceEEEEEeeecCCCCCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeC----CcchhHHHHHcCCeee
Q 003128 640 CSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES----RTNVAVILLEAGLAKL 711 (845)
Q Consensus 640 ~~i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~~----~~~i~~~Ll~~GlA~v 711 (845)
..++|+|+||.++ +..|..+|..+|++++.++.+.+.|.+.+.. .+.+.|++. +.+|+..|+++|||..
T Consensus 127 qA~~c~L~~v~p~--~~~w~~ea~~~f~~l~~~k~l~~~V~~~~~~-~~~V~L~d~~~~~~~~I~~~Lv~~gla~~ 199 (226)
T 4b9x_A 127 QGMQCWLVDIQPP--NKHWTKEATARFQACVVGLKLQARVVEITAN-GVGVELTDLSTPYPKIISDVLIREQLVLR 199 (226)
T ss_dssp CCEEEEESSEECS--SSSCCHHHHHHHHHHHTTCCEEEEEEEECSS-CEEEEEEECSSSSCEEHHHHHHHTTSSEE
T ss_pred ceEEEEEecEECC--CCCCCHHHHHHHHHHHCCCeEEEEEEEEeCC-eEEEEEEECCCCCCccHHHHHHHCCCccc
Confidence 4589999999965 5679999999999999999999999888644 467788864 3579999999999975
No 25
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=96.34 E-value=0.012 Score=57.92 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=50.1
Q ss_pred ceEEEEEeeecCCCCCcccHHHHHHHHHHHhcCceEEEEEEEEcCCCcEEEEEEeCCcchhHHH
Q 003128 640 CSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVIL 703 (845)
Q Consensus 640 ~~i~v~LaGI~~P~~~e~~g~EA~~~l~~~ll~r~V~v~v~~~Dk~Gr~~g~v~~~~~~i~~~L 703 (845)
..++|+|+||++|.. ..+|..++++++.++.+.+.|......+...++|+.++.+||+.|
T Consensus 107 qA~~c~L~~v~~~~~----~~ea~~~f~~l~~~k~l~~~V~~~~~~~~~~V~L~~~~~~in~~L 166 (169)
T 3ntk_A 107 YSRHCELDASTISKC----DAALLQSFIDTRFSETFQVEILATKGTGTHVVRLFYQSKNISEKL 166 (169)
T ss_dssp SSEEEEECGGGSCHH----HHHHHHHHHHTTTTSEEEEEEEEECTTSCEEEEEEETTEEHHHHC
T ss_pred eeEEEEECCcCCCCC----hHHHHHHHHHHhCCCeEEEEEEEecCCCCEEEEEEECCCCHHHHh
Confidence 458899999997742 889999999999999999999886433344499999999999876
No 26
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=95.49 E-value=0.013 Score=50.62 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=27.9
Q ss_pred CCCCCCCCEEEEEECCCCcEEeEEEEeecCCCcc
Q 003128 807 AFNPKKGEIVLAQFSADNSWNRAMVSELLPPLQF 840 (845)
Q Consensus 807 ~~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~~~ 840 (845)
+...++|+.|.|++ .|+.||-|+|+++.++..+
T Consensus 19 ~~~f~vGd~VlArW-~D~~yYPAkI~sV~~~~~Y 51 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDCRFYPAKVTAVNKDGTY 51 (85)
T ss_dssp --CCCTTCEEEEEC-TTSCEEEEEEEEECTTSEE
T ss_pred CcccccCCEEEEEe-CCCCEeeEEEEEECCCCeE
Confidence 45688999999999 7999999999999987643
No 27
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=95.27 E-value=0.019 Score=47.53 Aligned_cols=31 Identities=23% Similarity=0.119 Sum_probs=27.5
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeecCCCc
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELLPPLQ 839 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~~ 839 (845)
...++|+.|.|++ .|+.||-|+|+++.++..
T Consensus 5 ~~~~vGd~vmArW-~D~~yYpA~I~si~~~~~ 35 (67)
T 3p8d_A 5 SEFQINEQVLACW-SDCRFYPAKVTAVNKDGT 35 (67)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEEEEEECTTSE
T ss_pred cccccCCEEEEEc-CCCCEeeEEEEEECCCCe
Confidence 3578999999999 799999999999998754
No 28
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=87.87 E-value=0.58 Score=37.99 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=29.5
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeecCCCccc
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELLPPLQFA 841 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~~~~ 841 (845)
....+||.|.|+.+.|+.+|=|+|+++...+.+.
T Consensus 8 ~~~~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y 41 (66)
T 2l8d_A 8 RKYADGEVVMGRWPGSVLYYEVQVTSYDDASHLY 41 (66)
T ss_dssp SSSCSSCEEEEECTTSSCEEEEEEEEEETTTTEE
T ss_pred eEeecCCEEEEEcCCCccceEEEEEEeccCCceE
Confidence 4567999999999999999999999999666544
No 29
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=85.65 E-value=1.4 Score=35.92 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=30.1
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeecCCCcccc
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELLPPLQFAT 842 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~~~~~ 842 (845)
....+||.|.|+...|+.+|-|+|++++..+.+.+
T Consensus 11 ~~f~vgd~VmaRW~Gd~~yYparItSits~~~~Y~ 45 (68)
T 2dig_A 11 RKFADGEVVRGRWPGSSLYYEVEILSHDSTSQLYT 45 (68)
T ss_dssp CSSCSSCEEEEECTTTCCEEEEEEEEEETTTTEEE
T ss_pred eEeecCCEEEEEccCCccceEEEEEEeccCCceEE
Confidence 45779999999999999999999999996665543
No 30
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=84.35 E-value=1.4 Score=36.11 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=26.7
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeecCCC
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELLPPL 838 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~ 838 (845)
...++|+-|+|.++ |+.+|=|+|+++....
T Consensus 12 ~~f~vGddVLA~wt-DGl~Y~gtI~~V~~~~ 41 (66)
T 2eqj_A 12 CKFEEGQDVLARWS-DGLFYLGTIKKINILK 41 (66)
T ss_dssp CCSCTTCEEEEECT-TSCEEEEEEEEEETTT
T ss_pred ccccCCCEEEEEEc-cCcEEEeEEEEEccCC
Confidence 45889999999996 9999999999998754
No 31
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=74.57 E-value=4.1 Score=37.96 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=44.5
Q ss_pred cccEEEEEEEEEeeCCeEEEEecCchhHHHHHHHHHHhhccCCCCCCCCCCCCCCEEEEEECCCC----cEEeEEEEeec
Q 003128 760 QKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADN----SWNRAMVSELL 835 (845)
Q Consensus 760 ~g~~~~v~VseV~s~~~f~vQ~~~~~~L~~L~~~l~~~~~~~~~~~~~~~pk~G~~c~A~fs~D~----~WYRAkV~~~~ 835 (845)
.|..++++|..| ..+.+.|.+.++-+.++ .-.|.+... -++......+..||-|-+....++ .||+|+|+.+.
T Consensus 14 ~G~~y~a~V~~v-~~d~~~V~f~n~w~~~~-~vp~~~vRl-pP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 14 NGAFYKGFVKDV-HEDSVTIFFENNWQSER-QIPFGDVRL-PPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp TSCEEEEEEEEE-CSSEEEEEETTCTTCCE-EEEGGGEEC-CCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred CCCEEEEEEEEE-eCCcEEEEEccccCcce-EechhhEEc-CCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 488999999997 47779999976522100 000111111 111112356789999999444444 69999999987
Q ss_pred CC
Q 003128 836 PP 837 (845)
Q Consensus 836 ~~ 837 (845)
++
T Consensus 91 g~ 92 (128)
T 3h8z_A 91 GD 92 (128)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 32
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=73.88 E-value=4.6 Score=37.90 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeec
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELL 835 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~ 835 (845)
..+.+|+.|.+... |+.||.|+|+++.
T Consensus 11 ~~~~vGe~v~~~~~-d~~~y~AkIl~i~ 37 (133)
T 1wgs_A 11 VTVEIGETYLCRRP-DSTWHSAEVIQSR 37 (133)
T ss_dssp CCCCTTSEEEEEET-TTEEEEEEEEEEE
T ss_pred cccCCCCEEEEEeC-CCCEEEEEEEEEE
Confidence 45789999999875 8999999999976
No 33
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=69.15 E-value=3.3 Score=35.02 Aligned_cols=28 Identities=11% Similarity=0.028 Sum_probs=23.2
Q ss_pred CCCCCCEEEEEEC--CCCcEEeEEEEeecC
Q 003128 809 NPKKGEIVLAQFS--ADNSWNRAMVSELLP 836 (845)
Q Consensus 809 ~pk~G~~c~A~fs--~D~~WYRAkV~~~~~ 836 (845)
.+.+|+.|.+... .++.||.|+|+++..
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~ 34 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEI 34 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEc
Confidence 5779999999886 236899999999774
No 34
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=63.02 E-value=7.2 Score=34.84 Aligned_cols=27 Identities=19% Similarity=0.046 Sum_probs=22.6
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeecC
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELLP 836 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~~ 836 (845)
..+.+|+.|.+.. ++.||.|+|+++..
T Consensus 21 ~~f~vGekVl~~~--~~~~YeAkIl~v~~ 47 (102)
T 2f5k_A 21 PKFQEGERVLCFH--GPLLYEAKCVKVAI 47 (102)
T ss_dssp CSCCTTCEEEEES--SSSEEEEEEEEEEE
T ss_pred cccCCCCEEEEEE--CCEEEEEEEEEEEE
Confidence 4577999999954 79999999999873
No 35
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.43 E-value=10 Score=30.98 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=26.1
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeecCCC
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELLPPL 838 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~ 838 (845)
.....|+-|+|+.| |+.+|-+.|.+|....
T Consensus 8 ~~f~eGqdVLarWs-DGlfYlGtV~kV~~~~ 37 (68)
T 2e5p_A 8 PRLWEGQDVLARWT-DGLLYLGTIKKVDSAR 37 (68)
T ss_dssp CCCCTTCEEEEECT-TSSEEEEEEEEEETTT
T ss_pred cccccCCEEEEEec-CCcEEEeEEEEEecCC
Confidence 45779999999998 9999999999998543
No 36
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=60.96 E-value=10 Score=33.22 Aligned_cols=27 Identities=7% Similarity=-0.199 Sum_probs=23.0
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeecC
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELLP 836 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~~ 836 (845)
..+.+|+.|.+.. |+.||.|+|+++..
T Consensus 22 ~~~~vG~kv~v~~--~~~~y~AkIl~ir~ 48 (92)
T 2ro0_A 22 DDIIIKCQCWVQK--NDEERLAEILSINT 48 (92)
T ss_dssp TSCCTTCEEEEEE--TTEEEEEEEEEEEC
T ss_pred ccccCCCEEEEEE--CCEEEEEEEEEEEE
Confidence 3577999999974 89999999999874
No 37
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.53 E-value=6.3 Score=34.19 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=24.8
Q ss_pred CCCCCCCEEEEEEC---CCCcEEeEEEEeecC
Q 003128 808 FNPKKGEIVLAQFS---ADNSWNRAMVSELLP 836 (845)
Q Consensus 808 ~~pk~G~~c~A~fs---~D~~WYRAkV~~~~~ 836 (845)
..+.+|+.|.+... .++.||.|+|+++..
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~ 39 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKD 39 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECC
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEE
Confidence 45789999999874 589999999999875
No 38
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=55.03 E-value=11 Score=33.22 Aligned_cols=26 Identities=8% Similarity=-0.112 Sum_probs=22.3
Q ss_pred CCCCCCEEEEEECCCCcEEeEEEEeecC
Q 003128 809 NPKKGEIVLAQFSADNSWNRAMVSELLP 836 (845)
Q Consensus 809 ~pk~G~~c~A~fs~D~~WYRAkV~~~~~ 836 (845)
.+.+|+.|.+. .|+.||.|+|+++..
T Consensus 25 ~~~vG~kv~v~--~~~~~yeAeIl~ir~ 50 (94)
T 2rnz_A 25 DIIIKCQCWVQ--KNDEERLAEILSINT 50 (94)
T ss_dssp GCCTTEEEEEE--CSSCEEEEEEEEEEC
T ss_pred cccCCCEEEEE--ECCEEEEEEEEEEEE
Confidence 46799999997 389999999999874
No 39
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.09 E-value=16 Score=29.41 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=27.0
Q ss_pred CCCCCCCCCEEEEEECCCCcEEeEEEEeecCC
Q 003128 806 GAFNPKKGEIVLAQFSADNSWNRAMVSELLPP 837 (845)
Q Consensus 806 ~~~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~ 837 (845)
+....+.|+-|+|+.+ |+.+|=+.|.+|...
T Consensus 4 g~~~f~eGqdVLarWs-DGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 4 GSSGLTEGQYVLCRWT-DGLYYLGKIKRVSSS 34 (63)
T ss_dssp SCCCCCTTCEEEEECT-TSCEEEEEECCCCST
T ss_pred CccceecCCEEEEEec-CCCEEEEEEEEEecC
Confidence 3456889999999998 999999999998854
No 40
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=51.78 E-value=21 Score=28.43 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.5
Q ss_pred CCCCCCEEEEEECCCCcEEeEEEEeecCCC
Q 003128 809 NPKKGEIVLAQFSADNSWNRAMVSELLPPL 838 (845)
Q Consensus 809 ~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~ 838 (845)
..+.|+=|+|+.+ |+.+|=+.|+++....
T Consensus 3 ~f~~GedVLarws-DG~fYlGtI~~V~~~~ 31 (58)
T 4hcz_A 3 RLWEGQDVLARWT-DGLLYLGTIKKVDSAR 31 (58)
T ss_dssp SCCTTCEEEEECT-TSCEEEEEEEEEETTT
T ss_pred ccccCCEEEEEec-CCCEEeEEEEEEecCC
Confidence 3678999999998 8999999999988654
No 41
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=45.34 E-value=25 Score=31.24 Aligned_cols=28 Identities=29% Similarity=0.252 Sum_probs=22.8
Q ss_pred CCCCCCCEEEEEECCC----CcEEeEEEEeecC
Q 003128 808 FNPKKGEIVLAQFSAD----NSWNRAMVSELLP 836 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D----~~WYRAkV~~~~~ 836 (845)
..+.+|+.|++. ..| +.||.|+|+++..
T Consensus 18 ~~f~~GEkVLc~-h~d~~kg~~lYeAKIl~v~~ 49 (101)
T 3m9q_A 18 PLFHKGEIVLCY-EPDKSKARVLYTSKVLNVFE 49 (101)
T ss_dssp CCCCTTCEEEEE-CCCTTSCCCEEEEEEEEEEE
T ss_pred CcccCCCEEEEE-ecCCCCCCcceEeEEEEEEe
Confidence 567899999995 444 7899999999864
No 42
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=43.05 E-value=27 Score=31.56 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=23.0
Q ss_pred CCCCCCCEEEEEECCC----CcEEeEEEEeecC
Q 003128 808 FNPKKGEIVLAQFSAD----NSWNRAMVSELLP 836 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D----~~WYRAkV~~~~~ 836 (845)
..+.+|+.|++ |..| ..||-|+|+++..
T Consensus 18 ~~F~~GEkVLc-~hgd~~k~~~lYeAKIl~v~~ 49 (110)
T 3m9p_A 18 FKFHSGEKVLC-FEPDPTKARVLYDAKIVDVIV 49 (110)
T ss_dssp CCSCTTCEEEE-ECSCTTSCCCEEEEEEEEEEE
T ss_pred CcccCCCEEEE-EcCCCCCCCCceeeEEEEEEe
Confidence 45789999998 5556 6899999999864
No 43
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=41.74 E-value=20 Score=35.19 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=43.9
Q ss_pred ccEEEEEEEEEee-CCeEEEEecCchhHHHHHHHHHHhhcc---CCCCC---------CCCCCCCCCEEEEEECCCCcEE
Q 003128 761 KEVLKVVVTEILG-GGKFYVQQVGDQKVASVQQQLASLNLQ---EAPVI---------GAFNPKKGEIVLAQFSADNSWN 827 (845)
Q Consensus 761 g~~~~v~VseV~s-~~~f~vQ~~~~~~L~~L~~~l~~~~~~---~~~~~---------~~~~pk~G~~c~A~fs~D~~WY 827 (845)
++-+-+.|..+.. .+.|-|+..+... . ..|..+ ..|.+ ......+|+.|+|.|.+--++|
T Consensus 62 ~~WILa~Vv~~~~~~~rYeV~D~d~eg-----~--~~~~~s~~~IIPLP~~~a~p~t~~~~~f~~G~~VLAlYP~TT~FY 134 (180)
T 3mea_A 62 EQWILAEVVSYSHATNKYEVDDIDEEG-----K--ERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFY 134 (180)
T ss_dssp EEEEEEEEEEEETTTTEEEEEECCTTC-----C--EEEEEEGGGEEECCSBBCCTTTCGGGSCCTTCEEEEECTTSSEEE
T ss_pred ccEEEEEEEEEcCCCCEEEEecCCCCC-----c--eeEEeCHHHEEECCCcCCCcccCccccCCCCCEEEEeCCCCceee
Confidence 3456677777653 5688898887420 0 112221 01111 1134779999999999999999
Q ss_pred eEEEEeecC
Q 003128 828 RAMVSELLP 836 (845)
Q Consensus 828 RAkV~~~~~ 836 (845)
||.|.+...
T Consensus 135 ~A~V~~~p~ 143 (180)
T 3mea_A 135 RALIHAPPQ 143 (180)
T ss_dssp EEEEEECCS
T ss_pred EEEEecCCC
Confidence 999998643
No 44
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=37.42 E-value=30 Score=31.60 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=23.5
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeec
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELL 835 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~ 835 (845)
.++.+|+-|.|+-. ++.+||++|+++.
T Consensus 4 ~~v~vGq~V~akh~-ngryy~~~V~~~~ 30 (118)
T 2qqr_A 4 QSITAGQKVISKHK-NGRFYQCEVVRLT 30 (118)
T ss_dssp SCCCTTCEEEEECT-TSSEEEEEEEEEE
T ss_pred ceeccCCEEEEECC-CCCEEeEEEEEEe
Confidence 45789999999975 9999999999865
No 45
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=31.82 E-value=39 Score=29.54 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=19.8
Q ss_pred CCCEEEEEECCCCcEEeEEEEeecCC
Q 003128 812 KGEIVLAQFSADNSWNRAMVSELLPP 837 (845)
Q Consensus 812 ~G~~c~A~fs~D~~WYRAkV~~~~~~ 837 (845)
.|+.|.++- .|+.||+|+|+++...
T Consensus 17 ~~e~vlc~~-~dg~~yeAeIl~ir~~ 41 (92)
T 2bud_A 17 PDKIYFIRR-EDGTVHRGQVLQSRTT 41 (92)
T ss_dssp TTSCEEEEC-TTSCEEEEEEEEEECT
T ss_pred CCCEEEEEe-CCCCEEEEEEEEEeec
Confidence 477888754 4999999999998754
No 46
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=30.37 E-value=59 Score=24.97 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=28.0
Q ss_pred ccceeEEEEEEE-eCcEEEEEeCCCCCCCccceEEEEeecccC
Q 003128 377 DQNFTGKVVEVV-SGDCIIVADDSIPYGNALAERRVNLSSIRC 418 (845)
Q Consensus 377 ~~~~~~~V~~V~-sgd~i~v~~~~~~~~~~~~e~~v~Lssi~~ 418 (845)
++.++|+|.+|. +++++.|...+ +|+ ...|.+++||+
T Consensus 16 g~wYrA~I~~i~~~~~~~~V~fvD--YGn---~e~v~~~~lrp 53 (54)
T 3s6w_A 16 NKFYRAEVEALHSSGMTAVVKFID--YGN---YEEVLLSNIKP 53 (54)
T ss_dssp TEEEEEEEEEC--CCSEEEEEETT--TCC---EEEEEGGGEEC
T ss_pred CCEEEEEEEEEeCCCCEEEEEEEc--cCC---eEEEeHHHEEE
Confidence 357899999997 47888888854 344 67899999875
No 47
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=29.05 E-value=95 Score=25.50 Aligned_cols=32 Identities=9% Similarity=0.047 Sum_probs=26.0
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeecCCCcc
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELLPPLQF 840 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~~~~~~ 840 (845)
.....|+-|+|+.+ ||.+|=+.|+....+.++
T Consensus 14 ~~~~~geDVL~rw~-DG~fYLGtIVd~~~~~Cl 45 (69)
T 2xk0_A 14 VTYALQEDVFIKCN-DGRFYLGTIIDQTSDQYL 45 (69)
T ss_dssp CCCCTTCEEEEECT-TSCEEEEEEEEECSSCEE
T ss_pred cccccCCeEEEEec-CCCEEEEEEEecCCceEE
Confidence 55778999999987 899999999886655443
No 48
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=28.43 E-value=83 Score=24.66 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=30.4
Q ss_pred ccceeEEEEEEEe-CcEEEEEeCCCCCCCccceEEEEeecccCC
Q 003128 377 DQNFTGKVVEVVS-GDCIIVADDSIPYGNALAERRVNLSSIRCP 419 (845)
Q Consensus 377 ~~~~~~~V~~V~s-gd~i~v~~~~~~~~~~~~e~~v~Lssi~~P 419 (845)
++.++|+|.+|.. ++++.|...+ +|+ ...|.+++||..
T Consensus 18 g~wYrA~I~~i~~~~~~~~V~f~D--YGn---~e~v~~~~Lr~~ 56 (59)
T 1mhn_A 18 GCIYPATIASIDFKRETCVVVYTG--YGN---REEQNLSDLLSP 56 (59)
T ss_dssp SCEEEEEEEEEETTTTEEEEEETT--TTE---EEEEEGGGCBCT
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEc--CCC---EEEEcHHHeeCC
Confidence 3679999999986 6888998854 453 678999999975
No 49
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=33.50 E-value=13 Score=32.05 Aligned_cols=27 Identities=26% Similarity=0.062 Sum_probs=22.3
Q ss_pred CCCCCCCEEEEEECCCCcEEeEEEEeecC
Q 003128 808 FNPKKGEIVLAQFSADNSWNRAMVSELLP 836 (845)
Q Consensus 808 ~~pk~G~~c~A~fs~D~~WYRAkV~~~~~ 836 (845)
..+.+|+.|.+.. ++.||.|+|+++..
T Consensus 11 ~~~~~Gekv~~~~--~~~~y~AkIl~i~~ 37 (85)
T 2lrq_A 11 TLFVDGERVLCFH--GPLIYEAKVLKTKP 37 (85)
Confidence 3467899999976 56899999999874
No 50
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=23.26 E-value=1.2e+02 Score=25.99 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=30.5
Q ss_pred ccceeEEEEEEEe-CcEEEEEeCCCCCCCccceEEEEeecccCC
Q 003128 377 DQNFTGKVVEVVS-GDCIIVADDSIPYGNALAERRVNLSSIRCP 419 (845)
Q Consensus 377 ~~~~~~~V~~V~s-gd~i~v~~~~~~~~~~~~e~~v~Lssi~~P 419 (845)
+..++|+|.+|.. ++++.|...+ +|+ ...|.|++|+.+
T Consensus 25 g~wYrA~I~~i~~~~~~~~V~fiD--YGN---~E~V~~~~Lrp~ 63 (88)
T 1g5v_A 25 GCIYPATIASIDFKRETCVVVYTG--YGN---REEQNLSDLLSP 63 (88)
T ss_dssp CCEEEEEEEEEETTTTEEEEEETT--TCC---EEEEEGGGCBCC
T ss_pred CCEEEEEEEEecCCCCEEEEEEec--CCC---EEEEcHHHcccC
Confidence 3689999999986 5888888843 454 678999999975
No 51
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=21.49 E-value=1.1e+02 Score=27.86 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=30.9
Q ss_pred HHhhhhcCCCCcceE--EEEec-CCCEEEEEEcCCceEEEEEEe
Q 003128 177 MALLDANKGRPMQGI--VEQAR-DGSTLRVYLLPEFQFVQVFVA 217 (845)
Q Consensus 177 ~~~l~~~~~~~~~~~--Ve~V~-dG~t~~v~~~~~~~~~~v~l~ 217 (845)
-++|..|.|+++.-+ |+++. +|+++.+.- .++..++|.|.
T Consensus 14 ~s~L~~fvgk~VrivGkV~~~~~~g~~~~l~s-~Dg~~Vtv~l~ 56 (121)
T 3kdf_A 14 AGMLAQFIDKPVCFVGRLEKIHPTGKMFILSD-GEGKNGTIELM 56 (121)
T ss_dssp GGGGGGGTTCEEEEEEEEEEECTTSSEEEEEC-TTSCEEEEECS
T ss_pred HHHHHhhCCCeEEEEEEEEEEcCCCCEEEEEe-CCCCEEEEEeC
Confidence 456777888887655 88887 799999984 46778888884
No 52
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=21.17 E-value=1.1e+02 Score=25.52 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=29.4
Q ss_pred ccceeEEEEEEE-eCcEEEEEeCCCCCCCccceEEEEeecccC
Q 003128 377 DQNFTGKVVEVV-SGDCIIVADDSIPYGNALAERRVNLSSIRC 418 (845)
Q Consensus 377 ~~~~~~~V~~V~-sgd~i~v~~~~~~~~~~~~e~~v~Lssi~~ 418 (845)
+..++|+|.+|. +++++.|...+ +|+ ...|.+++||.
T Consensus 32 g~wYRA~I~~i~~~~~~~~V~fvD--YGN---~e~V~~~~Lr~ 69 (77)
T 3pnw_C 32 NKFYRAEVEALHSSGMTAVVKFID--YGN---YEEVLLSNIKP 69 (77)
T ss_dssp TEEEEEEEEEECTTSSEEEEEETT--TCC---EEEEEGGGEEC
T ss_pred CCEEEEEEEEEeCCCCEEEEEEEc--CCC---eEEEeHHHeEE
Confidence 368999999998 46788888854 454 77899999986
Done!