Query 003129
Match_columns 845
No_of_seqs 223 out of 1121
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 17:34:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 5E-160 1E-164 1448.6 82.2 809 19-844 2-811 (900)
2 KOG1041 Translation initiation 100.0 2E-128 4E-133 1162.4 64.9 718 48-844 42-786 (876)
3 KOG1042 Germ-line stem cell di 100.0 8E-115 2E-119 947.1 39.8 663 56-844 87-781 (845)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 1.4E-81 3.1E-86 713.3 34.2 358 448-844 1-377 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 7.1E-78 1.5E-82 689.7 37.4 386 417-844 3-401 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 6.1E-69 1.3E-73 605.0 32.6 334 460-844 1-346 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 6.7E-55 1.5E-59 476.5 18.8 243 573-844 1-252 (302)
8 cd04659 Piwi_piwi-like_ProArk 100.0 1.7E-34 3.6E-39 327.3 17.3 239 555-842 95-354 (404)
9 PF02170 PAZ: PAZ domain; Int 99.9 8.7E-23 1.9E-27 196.1 11.1 129 286-426 1-134 (135)
10 cd02846 PAZ_argonaute_like PAZ 99.8 8.5E-19 1.9E-23 163.3 11.8 107 286-403 2-114 (114)
11 cd02825 PAZ PAZ domain, named 99.8 8.3E-19 1.8E-23 163.2 10.6 106 285-403 1-115 (115)
12 cd02845 PAZ_piwi_like PAZ doma 99.8 8.1E-19 1.7E-23 162.8 8.2 107 286-405 2-116 (117)
13 PF08699 DUF1785: Domain of un 99.5 2.9E-14 6.2E-19 111.9 3.8 51 234-285 2-52 (52)
14 cd02844 PAZ_CAF_like PAZ domai 99.4 2.3E-13 4.9E-18 129.1 6.4 84 309-404 27-133 (135)
15 cd02843 PAZ_dicer_like PAZ dom 98.5 1.3E-07 2.7E-12 86.8 5.2 64 311-388 39-106 (122)
16 COG1431 Argonaute homolog, imp 96.6 0.034 7.3E-07 63.4 14.0 266 468-788 306-584 (685)
17 PF08459 UvrC_HhH_N: UvrC Heli 90.4 1.8 4E-05 42.4 9.3 108 646-783 9-120 (155)
18 TIGR00194 uvrC excinuclease AB 83.3 7.9 0.00017 46.2 11.1 110 649-788 382-498 (574)
19 PRK14672 uvrC excinuclease ABC 76.6 21 0.00045 43.2 11.5 110 646-786 452-564 (691)
20 PRK14671 uvrC excinuclease ABC 70.9 31 0.00067 41.7 11.4 109 647-788 414-526 (621)
21 PRK12306 uvrC excinuclease ABC 70.9 34 0.00075 40.4 11.5 109 647-788 365-477 (519)
22 PRK14670 uvrC excinuclease ABC 69.4 44 0.00095 40.0 12.0 111 647-786 357-471 (574)
23 PRK14667 uvrC excinuclease ABC 66.2 45 0.00097 39.9 11.3 109 647-788 360-472 (567)
24 PF00763 THF_DHG_CYH: Tetrahyd 64.0 16 0.00035 34.0 5.7 69 556-625 16-85 (117)
25 PRK00558 uvrC excinuclease ABC 63.7 56 0.0012 39.4 11.6 100 647-778 382-485 (598)
26 PRK14669 uvrC excinuclease ABC 60.1 68 0.0015 38.8 11.4 110 647-788 395-508 (624)
27 PRK14185 bifunctional 5,10-met 59.0 26 0.00057 38.1 7.0 69 557-625 18-87 (293)
28 PRK14171 bifunctional 5,10-met 56.5 38 0.00082 36.8 7.7 66 560-625 22-88 (288)
29 cd06559 Endonuclease_V Endonuc 56.2 59 0.0013 33.6 8.7 81 646-741 23-105 (208)
30 PRK14184 bifunctional 5,10-met 55.5 38 0.00083 36.7 7.5 68 557-624 18-86 (286)
31 PRK14666 uvrC excinuclease ABC 54.4 87 0.0019 38.2 10.9 100 647-778 471-571 (694)
32 PRK14668 uvrC excinuclease ABC 53.9 79 0.0017 37.9 10.5 106 647-787 374-485 (577)
33 PRK14187 bifunctional 5,10-met 53.5 45 0.00098 36.3 7.7 66 560-625 22-88 (294)
34 PRK14176 bifunctional 5,10-met 52.8 51 0.0011 35.8 7.9 66 560-625 28-94 (287)
35 PRK14183 bifunctional 5,10-met 51.6 45 0.00098 36.1 7.3 56 569-624 30-86 (281)
36 PRK14186 bifunctional 5,10-met 50.8 48 0.001 36.2 7.4 66 560-625 22-88 (297)
37 PLN02897 tetrahydrofolate dehy 50.8 45 0.00098 37.1 7.2 66 560-625 76-142 (345)
38 COG0322 UvrC Nuclease subunit 49.8 1.3E+02 0.0029 36.0 11.4 122 647-808 378-501 (581)
39 PRK14188 bifunctional 5,10-met 49.7 53 0.0012 35.9 7.6 68 558-625 20-88 (296)
40 PRK14177 bifunctional 5,10-met 49.5 53 0.0011 35.6 7.4 71 559-629 22-95 (284)
41 PRK14168 bifunctional 5,10-met 49.2 48 0.001 36.2 7.1 70 556-625 19-89 (297)
42 PLN02616 tetrahydrofolate dehy 49.1 54 0.0012 36.7 7.5 65 560-624 93-158 (364)
43 PLN02516 methylenetetrahydrofo 49.0 58 0.0013 35.6 7.7 66 560-625 29-95 (299)
44 PRK10792 bifunctional 5,10-met 48.9 49 0.0011 35.9 7.0 69 557-625 20-89 (285)
45 PRK14174 bifunctional 5,10-met 48.6 54 0.0012 35.8 7.4 66 560-625 21-87 (295)
46 PRK14192 bifunctional 5,10-met 47.6 62 0.0013 35.2 7.7 75 559-633 22-99 (283)
47 PRK14180 bifunctional 5,10-met 47.2 56 0.0012 35.4 7.2 66 560-625 21-87 (282)
48 PRK14169 bifunctional 5,10-met 46.8 59 0.0013 35.2 7.2 66 558-624 19-85 (282)
49 PRK14179 bifunctional 5,10-met 46.3 65 0.0014 35.0 7.5 67 559-625 21-88 (284)
50 PRK14193 bifunctional 5,10-met 44.5 63 0.0014 35.0 7.1 57 569-625 31-88 (284)
51 PRK14166 bifunctional 5,10-met 44.1 64 0.0014 35.0 7.0 64 560-624 21-85 (282)
52 PRK14191 bifunctional 5,10-met 44.1 71 0.0015 34.7 7.4 67 559-625 20-87 (285)
53 PRK14190 bifunctional 5,10-met 43.6 67 0.0014 34.9 7.1 65 560-625 23-88 (284)
54 PRK14194 bifunctional 5,10-met 43.3 71 0.0015 35.0 7.3 56 569-624 32-88 (301)
55 PRK14172 bifunctional 5,10-met 43.2 72 0.0016 34.5 7.2 69 557-625 19-88 (278)
56 PRK14173 bifunctional 5,10-met 38.6 86 0.0019 34.1 7.0 57 569-625 28-85 (287)
57 PRK14170 bifunctional 5,10-met 38.6 87 0.0019 34.0 7.0 64 560-624 22-86 (284)
58 PRK14181 bifunctional 5,10-met 37.5 93 0.002 33.8 7.0 56 569-624 25-81 (287)
59 PRK14182 bifunctional 5,10-met 36.8 94 0.002 33.7 6.9 56 569-624 29-85 (282)
60 PRK14167 bifunctional 5,10-met 36.2 1E+02 0.0022 33.7 7.1 57 569-625 30-87 (297)
61 KOG1924 RhoA GTPase effector D 35.6 62 0.0013 39.2 5.6 11 217-227 733-743 (1102)
62 PRK14178 bifunctional 5,10-met 35.3 1.2E+02 0.0026 32.8 7.4 58 568-625 24-82 (279)
63 COG0190 FolD 5,10-methylene-te 35.2 99 0.0022 33.4 6.7 65 560-624 20-85 (283)
64 PRK14189 bifunctional 5,10-met 34.0 1.3E+02 0.0028 32.7 7.4 56 569-624 31-87 (285)
65 PRK14175 bifunctional 5,10-met 32.9 1.2E+02 0.0025 33.1 6.9 55 570-624 32-87 (286)
66 KOG1924 RhoA GTPase effector D 30.3 85 0.0018 38.1 5.6 10 105-114 657-666 (1102)
67 KOG2488 Acetyltransferase (GNA 27.5 1.1E+02 0.0023 31.1 4.9 43 68-114 107-149 (202)
68 PF14475 Mso1_Sec1_bdg: Sec1-b 20.7 1.3E+02 0.0027 22.7 3.0 25 708-732 16-40 (41)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=5.1e-160 Score=1448.60 Aligned_cols=809 Identities=81% Similarity=1.282 Sum_probs=721.7
Q ss_pred CCCCCCCCCCCCCCCccccccccccccccccccCCCCCCCCCCCEEEEEeeEEEEEecCCCceEEEEEEEEEeCCCCCCC
Q 003129 19 DSLPPPPPVIPPDFVPTRVEEQEPAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVD 98 (845)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rpg~Gt~G~~i~L~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~ 98 (845)
+++||+||.+|+++++...+..+ ....+++.+++||||||.|++|+|.||||+|.+..++..+|||+|+|.++.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~ 80 (900)
T PLN03202 2 DALPPPPPVVPPNVVPIKLEPTK-KPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVD 80 (900)
T ss_pred CCCCCCCCCCCcccccccccccc-cccccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCccc
Confidence 57899999999999988765322 22566778899999999999999999999999765678899999999876556777
Q ss_pred CchhHHHHHHHHHHHHhhhcCCCceEeeCCcceEecCCCCCCcceEEEEeccccccCCCCCCCCCCCCCCCCCccccccC
Q 003129 99 GKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRR 178 (845)
Q Consensus 99 ~k~~~r~i~~~l~~~~~~~~~~~~~~yDG~k~Lfs~~~Lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 178 (845)
+++++++|+.++++++..++.|..+||||+++|||+++||.+..++.|.+.++...++..+++|+++++|++++++|.+.
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (900)
T PLN03202 81 GKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRR 160 (900)
T ss_pred chhhhHHHHHHHHHhhHHhhCCCceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccc
Confidence 78899999999998876667777899999999999999998777888888754332222346666677787777777777
Q ss_pred CCCCceEEEEEEeecccCHHHHHHHHcCCCCcChHHHHHHHHHHHhccccccCccccccccccCCCCCcccCCCcEEEee
Q 003129 179 PYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCR 258 (845)
Q Consensus 179 ~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~lq~Lniilr~~~~~~~~~~~g~~ff~~~~~~~~~lg~g~e~~~ 258 (845)
..+.+.|+|+|+++++|++++|.++|.|...++..+++|+||||||+.++..++..+|++||.++.....++++|+|+|+
T Consensus 161 ~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~ 240 (900)
T PLN03202 161 PYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCR 240 (900)
T ss_pred cCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEee
Confidence 77889999999999999999999999998777889999999999999998777888999999876555567999999999
Q ss_pred cceeEEEEeCCeeEEEEeccccccccCchHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEeecCceEEEeccCccccc
Q 003129 259 GFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCK 338 (845)
Q Consensus 259 Gf~~Svr~~~~gl~LniDvs~~~F~~~~~v~d~l~~~~~~~~~~~~d~~~~~~~Lkgl~V~~~~~~r~~kI~gi~~~~~~ 338 (845)
||++|||+++++|+||||+++++|++++||+|+|.+..+.++....+|.++.++|+|++|.++|+++.|+|.||++.+++
T Consensus 241 G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~ 320 (900)
T PLN03202 241 GFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCK 320 (900)
T ss_pred eeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCc
Confidence 99999999999999999999999999999999999877665555567889999999999999999999999999999999
Q ss_pred ccceecccCCCCCCCCCccceeeeHHHHHHHhcCCcccCCC-CCcEEEcCCCCCCceecccceEEcCCccccccCCHHHH
Q 003129 339 EQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSG-DLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQR 417 (845)
Q Consensus 339 ~~~F~~~~~~~~~~~~~~~~~~itv~eYf~~~y~i~L~~~p-~lP~v~vg~~~~~~ylP~Elc~i~~~Qr~~~~ls~~q~ 417 (845)
+.+|.++++++ ...++.+++|||+|||+++||++|+| | ++|||++|+.++++|||||||.|+|+|+++++|++.|+
T Consensus 321 ~~~F~~~~~~~--~~~~~~~~~iSv~dYfk~~Yni~l~~-p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~ 397 (900)
T PLN03202 321 EQTFSLKQRNG--NGNEVETVEITVYDYFVKHRGIELRY-SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQR 397 (900)
T ss_pred ceEEEcccCCc--ccccCCcceEEHHHHHHHHcCccccC-CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHH
Confidence 99998765321 01122245899999999999999999 6 99999999988999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhccCCCCccccceeeEecCCceeeeeEEcCCCeeecCCCcccCCCCCccccCCceee
Q 003129 418 ASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLV 497 (845)
Q Consensus 418 ~~li~~s~~~P~eR~~~i~~~~~~~~~~~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~~~~~~~g~W~~~~~~f~ 497 (845)
++|+++++.+|++|.+.|.++++.++++.+++|++|||+|+++|++|+||||+||+|.||++..+.|++|+||+++++|+
T Consensus 398 ~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~ 477 (900)
T PLN03202 398 SSLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLV 477 (900)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEec
Confidence 99999999999999999999999999988999999999999999999999999999999988777788999999999999
Q ss_pred cCCccceEEEEEeCCcccHHHHHHHHHHHhhhcCCccCCCccccccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEE
Q 003129 498 QPTKIERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCL 577 (845)
Q Consensus 498 ~p~~i~~Wavv~~~~~~~~~~f~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~ve~~~~~l~~~~~~~~~~vl~I 577 (845)
+|+++++|+|++|+.+++++.|++.|.+.|+.+||.+..|..+...++++......++++.+++++++.+...++|+|||
T Consensus 478 ~~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vI 557 (900)
T PLN03202 478 EPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCI 557 (900)
T ss_pred CCCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEE
Confidence 99999999999988767899999999999999999999887654444444334445789999999998877679999999
Q ss_pred cCCCCCCcchHHHHHHhhcccCceeeEeeccccChhHHHHHHHHHHhcCCCceeeccccCCCCCCcccCCCEEEEEEeee
Q 003129 578 LPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVS 657 (845)
Q Consensus 578 lp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k~~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~~p~~~~~~tMIiG~DVs 657 (845)
||++++.++|+.||++||+++||+||||..++.++||+.|||||||+||||+||.|.++.+..+|++.+.+|||||+||+
T Consensus 558 lp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVt 637 (900)
T PLN03202 558 LPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVS 637 (900)
T ss_pred EcCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEee
Confidence 99845789999999999999999999998878899999999999999999999999876555688888889999999999
Q ss_pred cCCCCCCCCCeEEEEEEecCCCcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 003129 658 HGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFR 737 (845)
Q Consensus 658 H~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyR 737 (845)
||++++.+.|||||+|||+|++.+++|.+.+++|.+++|+|++|+....++.+++|++++|+.||+.+++.+|++|||||
T Consensus 638 Hp~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyR 717 (900)
T PLN03202 638 HGSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFR 717 (900)
T ss_pred cCCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEe
Confidence 99998756799999999999767999999999999999999998765555567899999999999987789999999999
Q ss_pred ecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccCCCCCCCCCCceeeCcccCCccccccccchh
Q 003129 738 DGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGEPFHNFVQHKSITALDITFEN 817 (845)
Q Consensus 738 DGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~~N~ppGTVVD~~It~P~~~~~~~~~dF 817 (845)
||||||||.+|+++|+++|++||++++++|+|+||||||+||||||||+.+..+||+||||||++||||.+ |||
T Consensus 718 DGVseGQ~~~Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~~~~N~~pGTvVD~~it~p~~------~dF 791 (900)
T PLN03202 718 DGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAGSPDNVPPGTVVDNKICHPRN------NDF 791 (900)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccCCCCCCCCceEeccccccCCc------ceE
Confidence 99999999999999999999999999889999999999999999999998777999999999999999987 688
Q ss_pred HHHhhHHHhhccccccccccccccccc
Q 003129 818 FLFMQELLLTTKSVIQETMTSTFVPML 844 (845)
Q Consensus 818 fl~~~~~~l~s~~~~qGta~pt~Y~vl 844 (845)
| |+||.++|||||||||+||
T Consensus 792 y-------L~Sh~~~qGTarPthY~Vl 811 (900)
T PLN03202 792 Y-------MCAHAGMIGTTRPTHYHVL 811 (900)
T ss_pred E-------EecccccccCCcCceEEEE
Confidence 8 9999999999999999998
No 2
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-128 Score=1162.44 Aligned_cols=718 Identities=39% Similarity=0.616 Sum_probs=626.2
Q ss_pred ccccCCCCCCCCCCCEEEEEeeEEEEEecCCCce-EEEEEEEEEeCCCCCCCCchhHH-HHHHHHHHHH-hhhcCCCceE
Q 003129 48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGH-FYHYSVSVSYEDGRPVDGKGAGR-KVIDRVQETY-NAELDGKDFA 124 (845)
Q Consensus 48 ~~~~~~Rpg~Gt~G~~i~L~tN~f~v~~~~~~~~-~y~Y~V~i~~~~~~~v~~k~~~r-~i~~~l~~~~-~~~~~~~~~~ 124 (845)
...++.|||.|+.|+.+.|.+|||.++++.++.. ++||+|++.+ +..++..++ .+++.+.... ...+.+..++
T Consensus 42 ~~~~~~rp~~~~~g~~i~~~~n~f~~~~~~~~~~~~~~y~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (876)
T KOG1041|consen 42 VRFPMNRPGGGTKGKKIMVLVNHFKVDLKFTEESLFVHYSVGIFN----EHGRRKVQCLRFFLDKVKNPELFELKSGGPA 117 (876)
T ss_pred ccccccCCCCCccceEEEEeeeEEEeccccCCcceEEEeeeeecC----CCCchHHHHHHHHHHHHhccccccccCCccc
Confidence 3688899999999999999999999988766666 9999999954 444455554 5555444433 2335667778
Q ss_pred eeCCcceEecCCCCC--CcceEEEEeccccccCCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeecccCHHHHHH
Q 003129 125 YDGEKSLFTVGPLPR--NKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIAN 202 (845)
Q Consensus 125 yDG~k~Lfs~~~Lp~--~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~ 202 (845)
|||+++|||..+|+. ...+|.+..++. ...|++.|++++.+.+..+..
T Consensus 118 YDg~~~lyt~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~ik~~~~~~~~~~~~ 167 (876)
T KOG1041|consen 118 YDGQKTLYTKLELPEGVVTLDFDVISPKE------------------------------WKKFKVSIKKVSEVVLTKLNG 167 (876)
T ss_pred ccCCceeEeccccccccceEEEEecCCCC------------------------------CcceEEEEEecccccccCccc
Confidence 999999999888884 333444433321 112999999999999999988
Q ss_pred HHcCCCCcChHHHHHHHHHHHhccccccCccccccccccCCCCCcccCCCcEEEeecceeEEEEeCCeeEEEEecccccc
Q 003129 203 ALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMI 282 (845)
Q Consensus 203 ~l~g~~~~~~~~~lq~Lniilr~~~~~~~~~~~g~~ff~~~~~~~~~lg~g~e~~~Gf~~Svr~~~~gl~LniDvs~~~F 282 (845)
++.+.......+++|+|++++++.+...++..++++||.........+++|.|+|.||++|+|+++++++||+|+++++|
T Consensus 168 ~~~~~~~~~~~~~~~~ld~~~~~~~s~~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r~~~~~~~l~id~~~~~F 247 (876)
T KOG1041|consen 168 FIYTRGENAPRDANQTLDVVLREIATSQGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIRPTQGGLSLNIDVKTTAF 247 (876)
T ss_pred cccCccccCchhHHHHHHHHHHhhhchhcccccchheecCCCCCccccCCCceeeeeeeeeeeeccCceEEeeeeeeeee
Confidence 88887777889999999999999999888999999999874333345899999999999999999999999999999999
Q ss_pred ccCchHHHHHHHhcCCCC-CCchhHH-HHHHHhcCcEEEEeec--CceEEEeccCcccccccceecccCCCCCCCCCccc
Q 003129 283 IQPGPVVDFLIANQNVRD-PFSIDWA-KAKRTLKNLRIKTITS--NQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQE 358 (845)
Q Consensus 283 ~~~~~v~d~l~~~~~~~~-~~~~d~~-~~~~~Lkgl~V~~~~~--~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~ 358 (845)
+++.+|++++....+.++ +...+|. .+++.||||+|.++|+ +|.|+|.+++..+|.+++|++++.+ +
T Consensus 248 ~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~F~l~~~~---------~ 318 (876)
T KOG1041|consen 248 YKGTPVIEFLKKILEIKTRAFHKDRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTTFELKDKK---------G 318 (876)
T ss_pred ecCcchHHHHHhhhcCcccccccccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCceeeccCCC---------c
Confidence 999999999998776553 3333333 3899999999999993 5889999999999999999987532 4
Q ss_pred eeeeHHHHHHHhcCCcccCCCCCcEEEcCCCCCCceecccceEEcCCccccc-cCCHHHHHHHHHHhcCChHHHHHHHHH
Q 003129 359 LEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTK-ALTNLQRASLVEKSRQKPQERMSVLSN 437 (845)
Q Consensus 359 ~~itv~eYf~~~y~i~L~~~p~lP~v~vg~~~~~~ylP~Elc~i~~~Qr~~~-~ls~~q~~~li~~s~~~P~eR~~~i~~ 437 (845)
.++||+|||+++||++|+| |+||||++|+.++.+|||||||.|++||||.+ +|++.|++.|++.+++.|++|++.|..
T Consensus 319 ~~~tV~~Yf~~ky~~~Lky-p~LPcv~v~~~~~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~~R~~~i~~ 397 (876)
T KOG1041|consen 319 REITVADYFLEKYNITLKY-PDLPCVVVKRPKRENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPDQRQKLIKK 397 (876)
T ss_pred eEEeHHHHHHHhcCccccC-CCCccEeecCCCCCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 6999999999999999999 99999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHhccCCCCccccceeeEecCCceeeeeEEcCCCeeecCCC-cccCCCCCccccCCceeecCCccceEEEEEeCCcccH
Q 003129 438 ALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNG-EDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARCDI 516 (845)
Q Consensus 438 ~~~~~~~~~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~-~~~~~~~g~W~~~~~~f~~p~~i~~Wavv~~~~~~~~ 516 (845)
+++..++..+++|++|||.|.++|++|+||+|+||.|.|+++ ....|.+|.|++++++|+.|+.+..|+|++|+..++.
T Consensus 398 ~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~~P~L~~~~~~~~~~p~~g~~~~~~k~~~~~~~i~~wavv~f~~~~~~ 477 (876)
T KOG1041|consen 398 VLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVLPPPKLKFGGNEMPKNPTPGTWFMRNKKFVKPAKIKSWAVVNFSNSETL 477 (876)
T ss_pred HHHHhccccchhHHhcCeEEecccccccccccCCceeeccCCCCccCCCcCccccccCcccccceEEEEEEEEecccccc
Confidence 999998888999999999999999999999999999999988 4567789999999999999999999999999987633
Q ss_pred --HHHHHHHHHHhhhcCCccCCCccccccCccccCCCchHHHHHHHHHHHhhCC--CCCeEEEEEcCCCCCCcchHHHHH
Q 003129 517 --RSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLP--GAPQFLLCLLPERKNSDLYGPWKR 592 (845)
Q Consensus 517 --~~f~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~ve~~~~~l~~~~~--~~~~~vl~Ilp~~~~~~~Y~~iK~ 592 (845)
+.|++.|+++|+..||.|..|. .+. ..+.+++.++..++...+ ..+++++||+++ ++.++|+.||+
T Consensus 478 ~~~~f~~~L~~~c~~~Gm~i~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~li~~I~~~-k~~~vy~~lK~ 547 (876)
T KOG1041|consen 478 RQKQFVDELIKICKDKGMEIKRPR-KWA--------PTEESLEDMITEKSSMEKAAAGVQLVFIILPE-KNPDVHDELKY 547 (876)
T ss_pred cHHHHHHHHHHHHHHcCccccccc-ccC--------cccchhHHHHHHHHhhhccCCCceEEEEEECC-CCcchhHHHHH
Confidence 5899999999999999997633 211 123577788887776553 568999999998 88999999999
Q ss_pred HhhcccCceeeEeeccc---cChhHHHHHHHHHHhcCCCceeeccccCCCCCCcccCCCEEEEEEeeecCCCCCCC--CC
Q 003129 593 KNLADFGIVTQCMAPMR---VNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSD--IP 667 (845)
Q Consensus 593 ~~~~~~gI~TQci~~~k---~~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~~p~~~~~~tMIiG~DVsH~~~~~~~--~p 667 (845)
+++...||+|||+..++ ..+||++||+||||+||||+|+.+..+.+..+| ....||||||+|||||+++... .|
T Consensus 548 ~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG~dVsHp~~~~~~~~~P 626 (876)
T KOG1041|consen 548 IEETVGGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP-KLDSPTLFIGFDVSHPAAGTSFDGNP 626 (876)
T ss_pred HHHHhcCceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc-cCCCCeEEEEEeeeCCCcCCCcCCCc
Confidence 99999999999999854 568999999999999999999988876544444 4578999999999999998765 49
Q ss_pred eEEEEEEecCCCcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhcCCCCCcEEEEEeecCChhHHHH
Q 003129 668 SIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQ 747 (845)
Q Consensus 668 SiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGVSEgqf~~ 747 (845)
||||||+|+|| +.++|.+.+++|.+++|+|+++ ++|++++|..|++++ +.+|+||||||||||||||.+
T Consensus 627 Siagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~---------~~~~~~~l~~f~~~t-~~~P~~IIiyRdGvSEgqf~~ 695 (876)
T KOG1041|consen 627 SIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDL---------GEMIRELLRSFRKST-RKLPDRIVIYRDGVSEGQFSM 695 (876)
T ss_pred cEEEEEecccc-cchhhcceEEEecCChhhhcch---------HHHHHHHHHHHHHhc-cCCCceEEEEecCCccchHHH
Confidence 99999999999 8999999999999999999883 479999999998875 569999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccCCCC-------CCCCCCceeeCcccCCccccccccchhHHH
Q 003129 748 VLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSP-------DNVPPGEPFHNFVQHKSITALDITFENFLF 820 (845)
Q Consensus 748 Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~-------~N~ppGTVVD~~It~P~~~~~~~~~dFfl~ 820 (845)
|+++|+.+|++||..+.++|.|+|||||||||||||||+.+.. .|||||||||+.||||.+ ||||
T Consensus 696 vl~~E~~~ir~a~~~~~~~y~P~it~Iv~qKrHhtR~F~~~~~~~~~~~~~Nv~pGT~VD~~It~p~~------~dFy-- 767 (876)
T KOG1041|consen 696 VLEEELRAIKEACKKLQEGYNPKITVIVAQKRHHTRLFAAELSKDGKAQSQNVPPGTVVDTTITSPGY------FDFY-- 767 (876)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccceeeecccCCCCccCCccCCCCCCEecccccCCCc------ceEE--
Confidence 9999999999999999999999999999999999999997654 599999999999999998 6788
Q ss_pred hhHHHhhccccccccccccccccc
Q 003129 821 MQELLLTTKSVIQETMTSTFVPML 844 (845)
Q Consensus 821 ~~~~~l~s~~~~qGta~pt~Y~vl 844 (845)
|+||..+|||+||||||||
T Consensus 768 -----L~sh~g~qGTsrp~~Y~VL 786 (876)
T KOG1041|consen 768 -----LCSHHGLQGTSKPTHYTVL 786 (876)
T ss_pred -----EeccCcccccccCceEEEE
Confidence 9999999999999999997
No 3
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=8e-115 Score=947.08 Aligned_cols=663 Identities=24% Similarity=0.413 Sum_probs=577.7
Q ss_pred CCCCCCCEEEEEeeEEEEEecCCCceEEEEEEEEEeCCCCCCCCchhHHHHHHHHHHHHhhhcCCCceEeeCCcceEecC
Q 003129 56 GLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVG 135 (845)
Q Consensus 56 g~Gt~G~~i~L~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~~~~~~~~yDG~k~Lfs~~ 135 (845)
..|+.|.+++|.||||++.. .+++.+|||||+| .|.++++.++++++..+ +++.|+.++|||. +||..+
T Consensus 87 KtGssG~pv~l~tN~f~l~t-~p~w~iyqYhVef----~P~ves~rlR~~~L~~h-----~~lig~~~~FDG~-iLfl~~ 155 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMT-RPDWSIYQYHVEF----EPDVESRRLREALLYNH-----TDLIGKGYAFDGT-ILFLKE 155 (845)
T ss_pred ccCCCCceEEEEeceeeecc-CCCcEEEEEEEee----ccccccHHHHHHHHHHh-----Hhhhccceeecce-eehhhH
Confidence 46999999999999999875 5899999999999 67889999998888754 3466889999998 999999
Q ss_pred CCCCCcceEEEEeccccccCCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeecccCHHHHHHHHcCCCCcChHHH
Q 003129 136 PLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEA 215 (845)
Q Consensus 136 ~Lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~ 215 (845)
++.++..+. .++ +..+..++++|+++++++. .+.+.
T Consensus 156 k~eq~~tel-------~~k------------------------s~~ge~i~I~ik~~~~~~~-------------t~p~~ 191 (845)
T KOG1042|consen 156 KFEQKQTEL-------VSK------------------------SRDGELIKITIKLTNELPS-------------TDPQC 191 (845)
T ss_pred HHhhhhhee-------ecc------------------------cCCCceEEEEEEEeccccC-------------CChhH
Confidence 987764332 111 2356789999999999887 35689
Q ss_pred HHHHHHHHhccccccCccccccccccCCCCCcccC-CCcEEEeecceeEEEEeCCeeEEEEeccccccccCchHHHHHHH
Q 003129 216 FRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADV-GGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA 294 (845)
Q Consensus 216 lq~Lniilr~~~~~~~~~~~g~~ff~~~~~~~~~l-g~g~e~~~Gf~~Svr~~~~gl~LniDvs~~~F~~~~~v~d~l~~ 294 (845)
+|+||+|+|..+..++..++||+||++..+. ++ ...+++|+||-+|||..+..++|+.|++|++ .+..+|+|+|.+
T Consensus 192 iqv~NlI~RR~~k~L~L~qigRnyynp~~~i--~ip~~km~lwPGy~tSIrq~E~~illctei~hKv-mR~ETvy~~m~~ 268 (845)
T KOG1042|consen 192 IQVFNLILRRSMKGLNLTQIGRNYYDPRAKI--EIPEFKMSLWPGYETSIRQHENDILLCTEISHKV-MRTETVYDIMRS 268 (845)
T ss_pred HHHHHHHHHHHHhhccHHHhhhccCCCCccc--ccccccceecCcchhHHHHhhhceeeehhhhhhH-hhhhHHHHHHHH
Confidence 9999999999998888899999999986543 33 4689999999999999999999999999999 799999999998
Q ss_pred hcCCCCCCchhHHHHHHHhcCcEEEEeecCceEEEeccCcccccccceecccCCCCCCCCCccceeeeHHHHHHHhcCCc
Q 003129 295 NQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNID 374 (845)
Q Consensus 295 ~~~~~~~~~~d~~~~~~~Lkgl~V~~~~~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~itv~eYf~~~y~i~ 374 (845)
.++. +. ...+++++++-|+.|.|.||||+|+|++|++...+..+|..++ .+||+.|||+++|||+
T Consensus 269 ~~~~--~~-~~qe~~~~~~~glivLT~YNNktyriddvD~~~tP~stF~k~d------------geIs~veYyk~qYni~ 333 (845)
T KOG1042|consen 269 CQHN--TQ-RFQETVNKNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDD------------GEISFVEYYKKQYNIE 333 (845)
T ss_pred HhhC--HH-HHHHHHHHHhcceEEEEecCCceeeeeccccCcCccceeeecC------------ceeeHhHHHHHhcCeE
Confidence 7642 22 1356889999999999999999999999999999999997654 3899999999999999
Q ss_pred ccCCCCCcEEEcC-C-------CCCCceecccceEEcCCccccccCCHHHHH------HHHHHhcCChHHHHHHHHHHHH
Q 003129 375 LRYSGDLPCINVG-K-------PKRPTYIPLELCELVSLQRYTKALTNLQRA------SLVEKSRQKPQERMSVLSNALK 440 (845)
Q Consensus 375 L~~~p~lP~v~vg-~-------~~~~~ylP~Elc~i~~~Qr~~~~ls~~q~~------~li~~s~~~P~eR~~~i~~~~~ 440 (845)
|+. -+||+|... + .....++.||||+++| |++++|+ +|.+++++.|++|...+..++.
T Consensus 334 I~d-l~QPlliS~~k~K~~~g~~~q~~~lIPELc~~TG-------Ltd~mr~dF~~Mkama~hTRlsP~qR~~rlr~li~ 405 (845)
T KOG1042|consen 334 ITD-LNQPLLISEPKDKRPKGEPPQLAMLIPELCFLTG-------LTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRRLID 405 (845)
T ss_pred Eee-CCcceEeccCcccCCCCCCccceeeehhhhhccC-------CcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 998 999999862 2 2245799999999998 5666665 6889999999999999999988
Q ss_pred hccCC--CCccccceeeEecCCceeeeeEEcCCCeeecCCCcc-cCCCCCccc--cCCceeecCCccceEEEEEeCCcc-
Q 003129 441 LSKYD--NEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGED-FSPRNGRWN--FNNKKLVQPTKIERWAVVNFSARC- 514 (845)
Q Consensus 441 ~~~~~--~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~~-~~~~~g~W~--~~~~~f~~p~~i~~Wavv~~~~~~- 514 (845)
.+.-+ ....|+.|||+++.+.++|+||+|++.+|.+|+... ..+....|. ++.-.++....+++|+|++..+..
T Consensus 406 ~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEkI~~~~~~~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~~~ 485 (845)
T KOG1042|consen 406 RLQKNPNSVEELRDWGISLDSNLAEVQGRILPSEKILFGNQKVPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRNNS 485 (845)
T ss_pred HHhcChHHHHHHHhcCcccCcchhhccceecCccceecCCcccCCCcchhhhhhhcccccccccCCCcceEEEecCccHH
Confidence 87543 346799999999999999999999999999998753 334557897 777788999999999999766543
Q ss_pred cHHHHHHHHHHHhhhcCCccCCCccccccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHh
Q 003129 515 DIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKN 594 (845)
Q Consensus 515 ~~~~f~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~ve~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~ 594 (845)
.++.|++.|.+.+..+||+|..|..+... +++.+.+++.|++....++++|+||+|+ .+.+.|+.|||++
T Consensus 486 ~a~~fi~~l~r~a~~mgm~i~~P~~v~i~---------ddr~~tYvraiqq~v~~D~qmvvcil~~-~nk~~Y~sIKK~~ 555 (845)
T KOG1042|consen 486 EAQEFINMLRRVASSMGMQIREPICVEIK---------DDRPGTYVRAIQQVVGADIQMVVCILPS-DNKTRYDSIKKYL 555 (845)
T ss_pred HHHHHHHHHHHhccccceecCCceEEEeC---------CCChHHHHHHHHHhccCCceEEEEEecC-CchhhHHHHHhhe
Confidence 68999999999999999999999887543 3566788899998888889999999999 8899999999999
Q ss_pred hcccCceeeEeeccccCh-----hHHHHHHHHHHhcCCCceeeccccCCCCCCcccCCCEEEEEEeeecCCCCCCCCCeE
Q 003129 595 LADFGIVTQCMAPMRVND-----QYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSI 669 (845)
Q Consensus 595 ~~~~gI~TQci~~~k~~~-----q~~~Ni~lKINaKLGG~n~~l~~~~~~~~p~~~~~~tMIiG~DVsH~~~~~~~~pSi 669 (845)
+++.+||||||..++++. ...+.|+|||||||||..|.++ ||+ +.+||||+||+|.+.. ...|+
T Consensus 556 cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~~--k~rsv 624 (845)
T KOG1042|consen 556 CVDCPVPSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVE------IPL---KGLMIVGFDVYHDPTL--KGRSV 624 (845)
T ss_pred eccCCCccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEe------eec---ccceEEEEEeecCccc--cCceE
Confidence 999999999999987543 2578999999999999999884 677 7899999999998753 45799
Q ss_pred EEEEEecCCCcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhcCCCCCcEEEEEeecCChhHHHHHH
Q 003129 670 AAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVL 749 (845)
Q Consensus 670 aavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGVSEgqf~~Vl 749 (845)
+|+|||+|. ..++|++.+..|...+|+.+.|. -++..+|++||..| ..+|+|||+|||||||||+.++.
T Consensus 625 ga~VAs~n~-~~tr~fS~v~~~~~~qel~d~L~---------~~~~~ALr~y~~~n-~~LPsRIi~YRDGVgDGQLk~l~ 693 (845)
T KOG1042|consen 625 GAFVASMNN-DFTRWFSRVIEQENGQELADNLK---------VFLAKALRQYYEVN-RTLPSRIIVYRDGVGDGQLKTLV 693 (845)
T ss_pred EEEEEeecc-chhhhhhheecccCHHHHHHHHH---------HHHHHHHHHHHHhc-ccCCceEEEEecCCCCcccceee
Confidence 999999994 89999999999999999999875 49999999999876 69999999999999999999999
Q ss_pred HHHHH----HHHHHHHHccCCCCCeEEEEEEeeccccccccCCCC--CCCCCCceeeCcccCCccccccccchhHHHhhH
Q 003129 750 NVELN----QIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSP--DNVPPGEPFHNFVQHKSITALDITFENFLFMQE 823 (845)
Q Consensus 750 ~~El~----~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~--~N~ppGTVVD~~It~P~~~~~~~~~dFfl~~~~ 823 (845)
++|++ ++.+.+++++.+++|+++||||+||.++|||..+.. .||+||||||++||.|.+ ||||
T Consensus 694 n~EV~~~~dql~~~~a~~~~~~~~rl~~iVV~KrvntR~f~~~~~~~~NP~PGTVVD~~iT~pEr------yDFy----- 762 (845)
T KOG1042|consen 694 NYEVPLVCDQLLDCYAELSNKEKPRLAVIVVTKRVNTRFFLQGSSNAQNPPPGTVVDDTITRPER------YDFY----- 762 (845)
T ss_pred eeccchHHHHHHHHHHHhcCCCCCcEEEEEEEeeccHHHHhhCCccccCCCCCceecceecccce------eeeE-----
Confidence 99999 777777888888999999999999999999987654 899999999999999998 5778
Q ss_pred HHhhccccccccccccccccc
Q 003129 824 LLLTTKSVIQETMTSTFVPML 844 (845)
Q Consensus 824 ~~l~s~~~~qGta~pt~Y~vl 844 (845)
|+||.|+|||+.||||.||
T Consensus 763 --LvsQ~VrqGtvsPTsYnvi 781 (845)
T KOG1042|consen 763 --LVSQAVRQGTVSPTSYNVI 781 (845)
T ss_pred --eehhhhhcCCcCCceEEEE
Confidence 9999999999999999997
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=1.4e-81 Score=713.35 Aligned_cols=358 Identities=44% Similarity=0.722 Sum_probs=318.1
Q ss_pred ccccceeeEecCCceeeeeEEcCCCeeecCCC-cccCCCCCccccCCceeecCCccceEEEEEeCCcc-------cHHHH
Q 003129 448 PMLRSCGISISTNFAQVEGRVLPAPRLKFGNG-EDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSARC-------DIRSL 519 (845)
Q Consensus 448 ~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~-~~~~~~~g~W~~~~~~f~~p~~i~~Wavv~~~~~~-------~~~~f 519 (845)
++|++|||+|+++|++|+||+|+||.|.|+++ ....+.+|+|++++++|++++.+++|+|+++..+. +++.|
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~F 80 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSKTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNF 80 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCccccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHHHH
Confidence 46899999999999999999999999999954 45567899999999999999999999999987532 58899
Q ss_pred HHHHHHHhhhcCCccCCCccccccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccC
Q 003129 520 VRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFG 599 (845)
Q Consensus 520 ~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~ve~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~g 599 (845)
++.|.+.|+.+||.+. . ... ...++++.+++.+++.....++|+|||||+ ++.++|+.||++|+.+.|
T Consensus 81 ~~~l~~~~~~~g~~~~-~-~~~---------~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~~g 148 (426)
T cd04657 81 VDQLVKTVIGAGINIT-T-AIA---------SVEGRVEELFAKLKQAKGEGPQLVLVILPK-KDSDIYGRIKRLADTELG 148 (426)
T ss_pred HHHHHHHHHhcCCccc-c-ccc---------ccchhHHHHHHHHHhhccCCCCEEEEEEcC-CCcchHHHHHHHHhhcCC
Confidence 9999999999999986 1 111 113567888888887765578999999998 678999999999999999
Q ss_pred ceeeEeeccc----cChhHHHHHHHHHHhcCCCceeeccccCCCCCCcccCCCEEEEEEeeecCCCCC-CCCCeEEEEEE
Q 003129 600 IVTQCMAPMR----VNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGH-SDIPSIAAVVS 674 (845)
Q Consensus 600 I~TQci~~~k----~~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~~p~~~~~~tMIiG~DVsH~~~~~-~~~pSiaavVa 674 (845)
|+||||..++ .++||+.||+||||+||||+||.++... .+++...+|||||+||+||+++. ...|||||+||
T Consensus 149 I~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~~---~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Va 225 (426)
T cd04657 149 IHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPDI---RPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVA 225 (426)
T ss_pred cccEEEcccccccccchHHHHHHHHHHHHhcCCEeeeccccc---ccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEE
Confidence 9999999865 4789999999999999999999997532 23445689999999999999875 45799999999
Q ss_pred ecCCCcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhcCCCCCcEEEEEeecCChhHHHHHHHHHHH
Q 003129 675 SRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELN 754 (845)
Q Consensus 675 S~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGVSEgqf~~Vl~~El~ 754 (845)
|+|+ ..++|.+.+++|.+++|+|++|. +|++++|+.|++. ++.+|++|||||||||||||.+|+++|++
T Consensus 226 s~d~-~~~~y~~~~~~q~~~~e~i~~l~---------~~~~~~l~~~~~~-~~~~P~~IiiyRDGvsegq~~~v~~~E~~ 294 (426)
T cd04657 226 SVDW-HLAQYPASVRLQSHRQEIIDDLE---------SMVRELLRAFKKA-TGKLPERIIYYRDGVSEGQFAQVLNEELP 294 (426)
T ss_pred ecCC-cccccceEEEEeCCCcchHHHHH---------HHHHHHHHHHHHH-hCCCCceEEEEEcCcCHHHHHHHHHHHHH
Confidence 9997 89999999999999999998864 6999999999776 46899999999999999999999999999
Q ss_pred HHHHHHHHccCCCCCeEEEEEEeeccccccccCCC------CCCCCCCceeeCcccCCccccccccchhHHHhhHHHhhc
Q 003129 755 QIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGS------PDNVPPGEPFHNFVQHKSITALDITFENFLFMQELLLTT 828 (845)
Q Consensus 755 ~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~------~~N~ppGTVVD~~It~P~~~~~~~~~dFfl~~~~~~l~s 828 (845)
+|++||.++..+|+|+||||||+||||||||+.+. .+||+||||||++||||.. |||| |+|
T Consensus 295 ~i~~a~~~~~~~~~pkit~ivv~Krh~~Rff~~~~~~~~~~~~N~~pGTvVd~~it~p~~------~dFy-------L~s 361 (426)
T cd04657 295 AIRKACAKLYPGYKPKITFIVVQKRHHTRFFPTDEDDADGKNGNVPPGTVVDRGITHPRE------FDFY-------LCS 361 (426)
T ss_pred HHHHHHHHhccCCCCcEEEEEeccceeeeEeccCcccccccCCCCCCCeEEecccCCCCc------eeEE-------Eec
Confidence 99999999988899999999999999999998643 3799999999999999987 6788 999
Q ss_pred cccccccccccccccc
Q 003129 829 KSVIQETMTSTFVPML 844 (845)
Q Consensus 829 ~~~~qGta~pt~Y~vl 844 (845)
|.++|||||||||+||
T Consensus 362 h~~~qGTarPt~Y~vl 377 (426)
T cd04657 362 HAGIQGTARPTHYHVL 377 (426)
T ss_pred cccCccCCCCceEEEE
Confidence 9999999999999998
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=7.1e-78 Score=689.65 Aligned_cols=386 Identities=27% Similarity=0.445 Sum_probs=340.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhccCCCC--ccccceeeEecCCceeeeeEEcCCCeeecCCCcccCCCCCccccC--
Q 003129 417 RASLVEKSRQKPQERMSVLSNALKLSKYDNE--PMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFN-- 492 (845)
Q Consensus 417 ~~~li~~s~~~P~eR~~~i~~~~~~~~~~~~--~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~~~~~~~g~W~~~-- 492 (845)
+.+|++.++.+|++|++.|.++++.++.+.+ ++|++|||+|++++++|+||+|+||.|.|+++....+.+|+|++.
T Consensus 3 m~~l~~~~~~~P~eR~~~i~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~~~~w~~~~~ 82 (448)
T cd04658 3 MKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVFVYANSNADWKREIR 82 (448)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCccCCCCCCCcchhhc
Confidence 4689999999999999999999999877665 589999999999999999999999999999876666778999864
Q ss_pred CceeecCCccceEEEEEeCCc-ccHHHHHHHHHHHhhhcCCccCCCccccccCccccCCCchHHHHHHHHHHHhhCCCCC
Q 003129 493 NKKLVQPTKIERWAVVNFSAR-CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAP 571 (845)
Q Consensus 493 ~~~f~~p~~i~~Wavv~~~~~-~~~~~f~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~ve~~~~~l~~~~~~~~ 571 (845)
+..|+.+..+++|+|+++..+ .++..|++.|.+.++.+||.+..|..+...+ .+.+.+++.+++.+..++
T Consensus 83 ~~~~~~~~~~~~W~vi~~~~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~~---------~~~~~~~~~l~~~~~~~~ 153 (448)
T cd04658 83 NQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVKD---------DRIETYIRALKDAFRSDP 153 (448)
T ss_pred CCcccCCcccCeEEEEEecCCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeCC---------CCHHHHHHHHHHhhcCCC
Confidence 567899999999999988643 3799999999999999999999887653321 235667777777666689
Q ss_pred eEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeecccc-----ChhHHHHHHHHHHhcCCCceeeccccCCCCCCcccC
Q 003129 572 QFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRV-----NDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSK 646 (845)
Q Consensus 572 ~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k~-----~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~~p~~~~ 646 (845)
+|+|||+|+ +..++|..||++|+.+.||+||||..+++ ..+++.||++|||+||||+||.++.. ....
T Consensus 154 ~lvvvilp~-~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~------~~~~ 226 (448)
T cd04658 154 QLVVIILPG-NKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP------PFIL 226 (448)
T ss_pred cEEEEEECC-CCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC------CCCC
Confidence 999999998 66899999999999999999999998653 24689999999999999999998642 1235
Q ss_pred CCEEEEEEeeecCCCCCCCCCeEEEEEEecCCCcccceeeEEEeccCCccc-ccccccccCCcchHHHHHHHHHHHHHhc
Q 003129 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEM-IDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (845)
Q Consensus 647 ~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~-i~~l~~~~~~~~~~~~i~e~L~~f~~~~ 725 (845)
.+|||||+||+|++++ ..||+||+|||+|. ++++|.+.++.|..++|+ +++| ++|++++|..|++.+
T Consensus 227 ~~tmiiGidv~h~~~~--~~~Si~a~vas~~~-~~~~~~~~~~~q~~~~e~~~~~l---------~~~~~~~l~~y~~~~ 294 (448)
T cd04658 227 KNTMIVGIDVYHDTIT--KKKSVVGFVASLNK-SITKWFSKYISQVRGQEEIIDSL---------GKSMKKALKAYKKEN 294 (448)
T ss_pred CCeEEEEEeeecCCCC--CCCcEEEEEEEcCC-CCceEeeEEEEeCCCceeeHHHH---------HHHHHHHHHHHHHHh
Confidence 7999999999999874 46999999999995 899999999999999998 7765 469999999998764
Q ss_pred CCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccCCCC--CCCCCCceeeCcc
Q 003129 726 GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSP--DNVPPGEPFHNFV 803 (845)
Q Consensus 726 ~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~--~N~ppGTVVD~~I 803 (845)
+.+|++|||||||||||||.+|+++|+++|++||..++.+|+|+||||+|+||||+|||+.+.. +|||||||||++|
T Consensus 295 -~~~P~~IiiyRdGvsegq~~~v~~~E~~~i~~a~~~~~~~~~p~it~ivv~Kr~~~Rff~~~~~~~~N~~~GTvVd~~i 373 (448)
T cd04658 295 -KKLPSRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQYSENYSPKLAYIVVNKRINTRFFNQGGNNFSNPPPGTVVDSEI 373 (448)
T ss_pred -CCCCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEeccccceeecCCCCCCCCCCCCcEecccc
Confidence 7999999999999999999999999999999999998888999999999999999999997654 6999999999999
Q ss_pred cCCccccccccchhHHHhhHHHhhccccccccccccccccc
Q 003129 804 QHKSITALDITFENFLFMQELLLTTKSVIQETMTSTFVPML 844 (845)
Q Consensus 804 t~P~~~~~~~~~dFfl~~~~~~l~s~~~~qGta~pt~Y~vl 844 (845)
|||.. |||| |+||.++|||||||||+||
T Consensus 374 t~p~~------~dFy-------L~s~~~~qGtarP~~Y~Vl 401 (448)
T cd04658 374 TKPEW------YDFF-------LVSQSVRQGTVTPTHYNVL 401 (448)
T ss_pred cCCCc------ccEE-------EeccccCccCCCCceEEEE
Confidence 99997 5778 9999999999999999998
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=6.1e-69 Score=604.95 Aligned_cols=334 Identities=28% Similarity=0.405 Sum_probs=283.0
Q ss_pred CceeeeeEEcCCCeeecCCCcccCCCCCccccCCceeecCCcc-ceEEEEEeCCcccHHHHHHHHHHHhhhcCCccCC-C
Q 003129 460 NFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKI-ERWAVVNFSARCDIRSLVRDLIKCGEMKGILIDQ-P 537 (845)
Q Consensus 460 ~~~~v~grvL~~P~i~~g~~~~~~~~~g~W~~~~~~f~~p~~i-~~Wavv~~~~~~~~~~f~~~L~~~~~~~G~~i~~-P 537 (845)
.+++|+||+|+||.|.||++ |++++++|.+|+.+ ++|+|+++.. ...++|++.|.+.++++||.+.. |
T Consensus 1 ~~~~v~grvL~~p~i~~~~~---------w~~~~~~f~~~~~~~~~W~vi~~~~-~~~~~f~~~l~~~~~~~G~~~~~~~ 70 (393)
T cd02826 1 TPLILKGRVLPKPQILFKNK---------FLRNIGPFEKPAKITNPVAVIAFRN-EEVDDLVKRLADACRQLGMKIKEIP 70 (393)
T ss_pred CceEEeeEecCCCceEecCC---------ccccCCeeCCCCEeCCeEEEEEccc-HHHHHHHHHHHHHHHhCCCccCCCC
Confidence 36899999999999999864 99999999999999 9999998864 34678999999999999999988 5
Q ss_pred ccccccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeeccc-----cCh
Q 003129 538 FDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR-----VND 612 (845)
Q Consensus 538 ~~v~~~~~~~~~~~~~~~ve~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k-----~~~ 612 (845)
.....+..+ ++.+.+...+++....+++|+|||+|+ ++.++|+.||++|+.+ ||+||||..++ .++
T Consensus 71 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~~~~ 141 (393)
T cd02826 71 IVSWIEDLN-------NSFKDLKSVFKNAIKAGVQLVIFILKE-KKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMRRLK 141 (393)
T ss_pred Ccceeeccc-------ccHHHHHHHHHHHhhcCCCEEEEEEcC-CCccHHHHHHHHHhcc-CCceEEEehhhhccccccH
Confidence 543322110 122333444444333478999999998 7789999999999988 99999999754 357
Q ss_pred hHHHHHHHHHHhcCCCceeeccccCCCCCCcccCCCEEEEEEeeecCCCC-CCCCCeEEEEEEecCCCcccceeeEEEec
Q 003129 613 QYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPG-HSDIPSIAAVVSSRHWPLISRYRAAVRTQ 691 (845)
Q Consensus 613 q~~~Ni~lKINaKLGG~n~~l~~~~~~~~p~~~~~~tMIiG~DVsH~~~~-~~~~pSiaavVaS~d~~~~~~y~~~~~~Q 691 (845)
+|++||++|||+||||+||.++.. .+...+|||||+||+|++++ ....||++|+|||+|. . +.|.+.++.|
T Consensus 142 ~~~~Ni~lkin~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~~-~-~~~g~~~~~~ 213 (393)
T cd02826 142 QTLDNLLRKVNSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLSN-H-TFLGGFLYVQ 213 (393)
T ss_pred HHHHHHHHHHhhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecCC-c-cccceEEEEe
Confidence 899999999999999999999642 12347899999999999885 3357999999999995 3 5555667888
Q ss_pred cCCcccccccccccCCcchHHHHHHHHHHHHHhcCCC-CCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCe
Q 003129 692 SPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKR-KPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPK 770 (845)
Q Consensus 692 ~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~-~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pk 770 (845)
..++|++++| ++|++++|..|+++ ++. +|++|||||||||||||++|+++|+++|++||. +..+|+|+
T Consensus 214 ~~~~~~~~~l---------~~~~~~~L~~y~~~-~~~~~P~~IiiyRDGvsegq~~~v~~~e~~~i~~a~~-~~~~~~p~ 282 (393)
T cd02826 214 PSREVKLQDL---------GEVIKKCLDGFKKS-TGEGLPEKIVIYRDGVSEGEFKRVKEEVEEIIKEACE-IEESYRPK 282 (393)
T ss_pred cCccchHHHH---------HHHHHHHHHHHHHH-cCCCCcceeEEEecCCCHHHHHHHHHHHHHHHHHHHh-hCCCCCCC
Confidence 8888888775 46999999999775 467 999999999999999999999999999999999 77889999
Q ss_pred EEEEEEeeccccccccCCCC---CCCCCCceeeCcccCCccccccccchhHHHhhHHHhhccccccccccccccccc
Q 003129 771 FAVIVAQKNHHTKFFQSGSP---DNVPPGEPFHNFVQHKSITALDITFENFLFMQELLLTTKSVIQETMTSTFVPML 844 (845)
Q Consensus 771 it~Ivv~KrhhtRff~~~~~---~N~ppGTVVD~~It~P~~~~~~~~~dFfl~~~~~~l~s~~~~qGta~pt~Y~vl 844 (845)
||||+|+||||+|||+.+.. .||+||||||++||||.. +||| |+||.++|||++||||+||
T Consensus 283 it~Ivv~Krh~~Rff~~~~~~~~~Np~~GTvVd~~it~p~~------~dFy-------L~sh~~~qGT~rP~~Y~Vl 346 (393)
T cd02826 283 LVIIVVQKRHNTRFFPNEKNGGVQNPEPGTVVDHTITSPGL------SEFY-------LASHVARQGTVKPTKYTVV 346 (393)
T ss_pred EEEEEEeccccceeccCCCCCCCCCCCCceEeccccccCCc------ceEE-------EeccccCcCCCCCceEEEE
Confidence 99999999999999997543 799999999999999987 5778 9999999999999999998
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=100.00 E-value=6.7e-55 Score=476.49 Aligned_cols=243 Identities=42% Similarity=0.628 Sum_probs=211.3
Q ss_pred EEEEEcCCCCCCcchHHHHHHhhcccCceeeEeeccc---c--ChhHHHHHHHHHHhcCCCce-eeccccCCCCCCcccC
Q 003129 573 FLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---V--NDQYLTNVLLKINAKLGGLN-SLLAVEHSPSIPIVSK 646 (845)
Q Consensus 573 ~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k---~--~~q~~~Ni~lKINaKLGG~n-~~l~~~~~~~~p~~~~ 646 (845)
+|+||+|+ ++.+.|..+|++++.++||+||||..++ . +.+++.||++||||||||.| |.++.. ...++
T Consensus 1 ~i~~ii~~-~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~--~~~~~--- 74 (302)
T PF02171_consen 1 LIVVIIPD-KNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSP--PSIDL--- 74 (302)
T ss_dssp -EEEEESS-SSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCS--SGSSE---
T ss_pred CEEEEEeC-CChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccc--ccccc---
Confidence 58899999 8889999999999999999999999854 2 36899999999999999996 444321 11222
Q ss_pred CCEEEEEEeeecCCCCCCCCCeEEEEEEecCCCcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhcC
Q 003129 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSG 726 (845)
Q Consensus 647 ~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~ 726 (845)
.+|||||+||+|++++....||++|+|+|+|. ..++|.+.+..|..++|++++|. ++++++|+.|++.++
T Consensus 75 ~~~miIGidv~h~~~~~~~~~sv~g~~~s~~~-~~~~~~~~~~~~~~~~e~~~~l~---------~~~~~~L~~~~~~~~ 144 (302)
T PF02171_consen 75 KNTMIIGIDVSHPSPGSDKNPSVVGFVASFDS-DGSKYFSSVRFQDSGQEIIDNLE---------EIIKEALKEFKKNNG 144 (302)
T ss_dssp SEEEEEEEEEEEESSTCTCSCEEEEEEEEEST-TTCEEEEEEEEECTTCCCHHHHH---------HHHHHHHHHHHHTTT
T ss_pred CceEEEEEEEEecCcccCCcceeeEEEEeccC-ccccccceeEEeccchhhhcchh---------hHHHHHHHHHHHHcC
Confidence 78999999999998865457999999999994 89999999999999999998864 599999999987654
Q ss_pred CCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccCCCC---CCCCCCceeeCcc
Q 003129 727 KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSP---DNVPPGEPFHNFV 803 (845)
Q Consensus 727 ~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~---~N~ppGTVVD~~I 803 (845)
+.+|++|||||||||||||.+|+++|+++|++||+++..+|+|+|+||+|+||||+|||+.+.. .||+||||||+.|
T Consensus 145 ~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~~~~~p~~~~i~v~K~~~~R~f~~~~~~~~~N~~~Gtvvd~~i 224 (302)
T PF02171_consen 145 KWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELGEDYNPKITYIVVQKRHNTRFFPQNGRDGLQNPPPGTVVDTGI 224 (302)
T ss_dssp T-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHTHTTCTEEEEEEEESSSS--EEESSSEETTTEECTTEEESSEE
T ss_pred CCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcccCCCCcEEEEEeeccccceEeecccccccCCCCCCeeeccce
Confidence 3499999999999999999999999999999999999999999999999999999999998764 5999999999999
Q ss_pred cCCccccccccchhHHHhhHHHhhccccccccccccccccc
Q 003129 804 QHKSITALDITFENFLFMQELLLTTKSVIQETMTSTFVPML 844 (845)
Q Consensus 804 t~P~~~~~~~~~dFfl~~~~~~l~s~~~~qGta~pt~Y~vl 844 (845)
|+|.. +||| |+||.++|||++||||+||
T Consensus 225 ~~~~~------~~f~-------l~s~~~~~Gt~~P~~y~vl 252 (302)
T PF02171_consen 225 TSPNY------FEFY-------LVSHTARQGTARPTHYTVL 252 (302)
T ss_dssp EECSB------EEEE-------EETSCCCSSSEEEEEEEEE
T ss_pred eeecc------eeee-------eeecccccccccccEEEEe
Confidence 99987 5778 9999999999999999987
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=1.7e-34 Score=327.29 Aligned_cols=239 Identities=21% Similarity=0.251 Sum_probs=175.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEEcCCCC-----CCcchHHHHHHhhcccCceeeEeecccc-----ChhHHHHHHHHHHh
Q 003129 555 RVEKMFDEIQSKLPGAPQFLLCLLPERK-----NSDLYGPWKRKNLADFGIVTQCMAPMRV-----NDQYLTNVLLKINA 624 (845)
Q Consensus 555 ~ve~~~~~l~~~~~~~~~~vl~Ilp~~~-----~~~~Y~~iK~~~~~~~gI~TQci~~~k~-----~~q~~~Ni~lKINa 624 (845)
.+...++...+.....++++||++|++. ..++|..||++| .+.||+||||..+++ ..+++.||++|||+
T Consensus 95 ~~~~a~~~~~~~~~~~~~~~lvilP~~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~a 173 (404)
T cd04659 95 AIIEAVDLALSESSQGVDVVIVVLPEDLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALYA 173 (404)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCHHHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHHH
Confidence 3333444443333346899999999832 279999999987 579999999998653 35689999999999
Q ss_pred cCCCceeeccccCCCCCCcccCCCEEEEEEeeecCCCCCCCCCeEEEEEEecCCCcccceeeEEEeccCCcccccccccc
Q 003129 625 KLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKK 704 (845)
Q Consensus 625 KLGG~n~~l~~~~~~~~p~~~~~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~ 704 (845)
||||+||.|+.. ...+|||||+||+|+..+....+++|+|+.+ +. . +.+..|.+..+.+++-
T Consensus 174 KlGG~pW~l~~~--------~~~~~~iIGidv~~~~~~~~~~~~~a~vf~~-~g---~---g~~~~~~~~~~~~~~~--- 235 (404)
T cd04659 174 KLGGIPWKLDAD--------SDPADLYIGIGFARSRDGEVRVTGCAQVFDS-DG---L---GLILRGAPIEEPTEDR--- 235 (404)
T ss_pred hcCCCceEcccC--------CCCCeEEEEEEEEEcCCCCEEEEEEEEEEcC-CC---C---EEEEecCccCCccccc---
Confidence 999999999631 2378999999999998653223455544333 32 1 1122233333333210
Q ss_pred cCCcchHHHHHHHHHHHHHhcCCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeecccccc
Q 003129 705 VSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKF 784 (845)
Q Consensus 705 ~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRf 784 (845)
+.+.+.++++++|..|.+.++..+|+||||||||+. .++|+++|++||.+++ |+++||+|+|+||+||
T Consensus 236 -~~~~~~~~l~~~l~~y~~~~~~~~P~rIiihrdg~~-------~~~E~~~i~~a~~~~~----~~i~~I~V~k~~~~R~ 303 (404)
T cd04659 236 -SPADLKDLLKRVLEGYRESHRGRDPKRLVLHKDGRF-------TDEEIEGLKEALEELG----IKVDLVEVIKSGPHRL 303 (404)
T ss_pred -CHHHHHHHHHHHHHHHHHHcCCCCCeEEEEECCCCC-------CHHHHHHHHHHHHhhC----ceEEEEEEEecCCcce
Confidence 012356799999999877654349999999999993 6899999999999874 9999999999999999
Q ss_pred ccCCCC---CCCCCCceeeCcccCCccccccccchhHHHhhHHHhhccccc--------cccccccccc
Q 003129 785 FQSGSP---DNVPPGEPFHNFVQHKSITALDITFENFLFMQELLLTTKSVI--------QETMTSTFVP 842 (845)
Q Consensus 785 f~~~~~---~N~ppGTVVD~~It~P~~~~~~~~~dFfl~~~~~~l~s~~~~--------qGta~pt~Y~ 842 (845)
|..+.. .||++|||||.. . +||| |.+|... +||++|+|..
T Consensus 304 f~~~~~~~~~np~~GT~v~~~-----~------~~~~-------L~s~g~~~~~~~~~~~gtp~Pl~v~ 354 (404)
T cd04659 304 FRFGTYPNGFPPRRGTYVKLS-----D------DEGL-------LWTHGSVPKYNTYPGMGTPRPLLLR 354 (404)
T ss_pred EEecCCCCCCCCCCceEEEeC-----C------CeEE-------EEecCCccccccCCCCCCCCcEEEE
Confidence 986543 589999999953 1 4677 7777764 9999999943
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.88 E-value=8.7e-23 Score=196.05 Aligned_cols=129 Identities=40% Similarity=0.593 Sum_probs=108.6
Q ss_pred chHHHHHHHhcCCCCCCchhH-HHHHHHhcCcEEEEeecC--ceEEEeccCcccccccceecccCCCCCCCCCccceeee
Q 003129 286 GPVVDFLIANQNVRDPFSIDW-AKAKRTLKNLRIKTITSN--QEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEIT 362 (845)
Q Consensus 286 ~~v~d~l~~~~~~~~~~~~d~-~~~~~~Lkgl~V~~~~~~--r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~it 362 (845)
++|+|+|.+..+........+ .++++.|+|++|.++|++ +.|+|.+|++.++++.+|..+. +.++|
T Consensus 1 ~~vld~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~-----------g~~it 69 (135)
T PF02170_consen 1 QSVLDFLKEIQNFRQRNNIKFQKKLERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDND-----------GKEIT 69 (135)
T ss_dssp HHHHHHHHHHCTCSSHHHHHHHHHHHHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETT-----------SEEEE
T ss_pred CcHHHHHHHHHhhhcccchHHHHHHHHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCC-----------CceEE
Confidence 479999998876654433333 348999999999999998 9999999999999999998762 26999
Q ss_pred HHHHHHHhcCCcccCCCCCcEEEcCCCCC--CceecccceEEcCCccccccCCHHHHHHHHHHhcC
Q 003129 363 VYDYFVNNRNIDLRYSGDLPCINVGKPKR--PTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQ 426 (845)
Q Consensus 363 v~eYf~~~y~i~L~~~p~lP~v~vg~~~~--~~ylP~Elc~i~~~Qr~~~~ls~~q~~~li~~s~~ 426 (845)
|+|||+++||++|+| |+||||.++..++ ++|||||||.|+++|++.+++.+.+++.|++.+++
T Consensus 70 v~eYf~~~Y~i~L~~-p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~ 134 (135)
T PF02170_consen 70 VAEYFKEKYNIRLKY-PDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACS 134 (135)
T ss_dssp HHHHHHHTCT---SS-TTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS
T ss_pred hHHHHHhhhhccccc-CCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhc
Confidence 999999999999999 9999999998777 99999999999999999999999999999999876
No 10
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.78 E-value=8.5e-19 Score=163.31 Aligned_cols=107 Identities=41% Similarity=0.773 Sum_probs=93.0
Q ss_pred chHHHHHHHhcCCCCC---CchhHHHHHHHhcCcEEEEeec---CceEEEeccCcccccccceecccCCCCCCCCCccce
Q 003129 286 GPVVDFLIANQNVRDP---FSIDWAKAKRTLKNLRIKTITS---NQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQEL 359 (845)
Q Consensus 286 ~~v~d~l~~~~~~~~~---~~~d~~~~~~~Lkgl~V~~~~~---~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~ 359 (845)
++|+|++.+..+..+. ...++.++.++|+|++|.++|. +|.|+|.||+..++.+.+|..++++ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~----------~ 71 (114)
T cd02846 2 QPVIEFLKEFLGFDTPLGLSDNDRRKLKKALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGE----------K 71 (114)
T ss_pred ccHHHHHHHHhCcccccccchHHHHHHHHHhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCC----------c
Confidence 6899999987765432 2347788999999999999997 6899999999999989999765421 4
Q ss_pred eeeHHHHHHHhcCCcccCCCCCcEEEcCCCCCCceecccceEEc
Q 003129 360 EITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELV 403 (845)
Q Consensus 360 ~itv~eYf~~~y~i~L~~~p~lP~v~vg~~~~~~ylP~Elc~i~ 403 (845)
++||+|||+++||++|+| |+||||++|+.++++|+|||||.|+
T Consensus 72 ~isV~dYf~~~y~~~l~~-p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 72 EISVADYFKEKYNIRLKY-PNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred EEEHHHHHHHHcCCcccC-CCCCEEEeCCCCCCcEecceeEEeC
Confidence 899999999999999999 9999999999889999999999984
No 11
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.78 E-value=8.3e-19 Score=163.24 Aligned_cols=106 Identities=23% Similarity=0.345 Sum_probs=90.2
Q ss_pred CchHHHHHHHhcCCCC----CCchhHHHHHHHhcCcEEEEeec--CceEEEeccCcccccccceecccCCCCCCCCCccc
Q 003129 285 PGPVVDFLIANQNVRD----PFSIDWAKAKRTLKNLRIKTITS--NQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQE 358 (845)
Q Consensus 285 ~~~v~d~l~~~~~~~~----~~~~d~~~~~~~Lkgl~V~~~~~--~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~ 358 (845)
.++|+|++.+..+.++ ..+.++.++.+.|+|++|.++|+ ++.|+|.||++.++.++ |...+ +
T Consensus 1 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~-----------~ 68 (115)
T cd02825 1 ADPVIETMCKFPKDREIDTPLLDSPREEFTKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSD-----------G 68 (115)
T ss_pred CccHHHHHHHHhcccccccccchHHHHHHHHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCC-----------C
Confidence 3689999988665432 23457788999999999999998 79999999999999988 75432 2
Q ss_pred eeeeHHHHHHHhcCCcccCCCCCcEEEcCCC---CCCceecccceEEc
Q 003129 359 LEITVYDYFVNNRNIDLRYSGDLPCINVGKP---KRPTYIPLELCELV 403 (845)
Q Consensus 359 ~~itv~eYf~~~y~i~L~~~p~lP~v~vg~~---~~~~ylP~Elc~i~ 403 (845)
.++||+|||+++||+.|+| |+||||++|+. .+++|||||||.|+
T Consensus 69 ~~isv~dYf~~kY~~~l~~-p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 69 KEITFADYFKERYNLTLTD-LNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred CEEEHHHHHHHHcCCcccC-CCCCEEEecCcccCCCceEEchheEEeC
Confidence 4899999999999999999 99999999987 77899999999985
No 12
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.76 E-value=8.1e-19 Score=162.81 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=88.8
Q ss_pred chHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEeecCceEEEeccCcccccccceecccCCCCCCCCCccceeeeHHH
Q 003129 286 GPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYD 365 (845)
Q Consensus 286 ~~v~d~l~~~~~~~~~~~~d~~~~~~~Lkgl~V~~~~~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~itv~e 365 (845)
.+|+|++....+... ...+++++++.|+|+.|.+.|+|+.|+|.+|++.+++.++|..+++ .++||+|
T Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~~-----------~~~S~~~ 69 (117)
T cd02845 2 TTVLDRMHKLYRQET-DERFREECEKELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDG-----------TEITFVE 69 (117)
T ss_pred eeHHHHHHHHHHhcc-cHHHHHHHHHHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCCC-----------CeeeHHH
Confidence 367888776443211 1126788999999999999999999999999999999999965431 3789999
Q ss_pred HHHHhcCCcccCCCCCcEEEcCCC--------CCCceecccceEEcCC
Q 003129 366 YFVNNRNIDLRYSGDLPCINVGKP--------KRPTYIPLELCELVSL 405 (845)
Q Consensus 366 Yf~~~y~i~L~~~p~lP~v~vg~~--------~~~~ylP~Elc~i~~~ 405 (845)
||+++||+.|+| ++||||.++.+ .+++|||||||.++|.
T Consensus 70 Yy~~kY~i~I~~-~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltgl 116 (117)
T cd02845 70 YYKKQYNIEITD-LNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTGL 116 (117)
T ss_pred HHHHHcCCcccc-CCCCcEEeeccccccCCCCCcEEEEchHHhhhcCC
Confidence 999999999999 99999999763 3489999999999985
No 13
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.47 E-value=2.9e-14 Score=111.92 Aligned_cols=51 Identities=49% Similarity=0.762 Sum_probs=41.5
Q ss_pred ccccccccCCCCCcccCCCcEEEeecceeEEEEeCCeeEEEEeccccccccC
Q 003129 234 LVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQP 285 (845)
Q Consensus 234 ~~g~~ff~~~~~~~~~lg~g~e~~~Gf~~Svr~~~~gl~LniDvs~~~F~~~ 285 (845)
.+||+||+.+... .++++|+|+|+|||+|+|++.++|.||||+++++|+++
T Consensus 2 ~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~~aF~~p 52 (52)
T PF08699_consen 2 AVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSHTAFYKP 52 (52)
T ss_dssp EETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCEECCC--
T ss_pred ccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCceeeEECc
Confidence 4799999987554 68999999999999999999999999999999999985
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.41 E-value=2.3e-13 Score=129.14 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=70.2
Q ss_pred HHHHhcCcEEEEeecCceEEEeccCcccccccceecccCCCCCCCCCccceeeeHHHHHHHhcCCcccCCCCCcEEEcCC
Q 003129 309 AKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGK 388 (845)
Q Consensus 309 ~~~~Lkgl~V~~~~~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~itv~eYf~~~y~i~L~~~p~lP~v~vg~ 388 (845)
..+.|+|+.|.++|++|.|+|.+|+ ..+++++|+.+++ +..+||+|||+++|||.|+| ++||||++..
T Consensus 27 ~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~----------~~~~Sy~eYy~~kY~i~L~~-~~QPLL~~~~ 94 (135)
T cd02844 27 CACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEG----------LGYATYAEYFKEKYGIVLNH-PNQPLLKGKQ 94 (135)
T ss_pred cHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCC----------CceeeHHHHHHHHhCceecc-CCcceEEEec
Confidence 4578999999999999999999999 8999999976542 13699999999999999999 9999997541
Q ss_pred -----------------------CCCCceecccceEEcC
Q 003129 389 -----------------------PKRPTYIPLELCELVS 404 (845)
Q Consensus 389 -----------------------~~~~~ylP~Elc~i~~ 404 (845)
....++||||||.+.+
T Consensus 95 ~~~~~NlL~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 95 IFNLHNLLHNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred ccccceecccccccccccccccccceEEEeChHHhcccc
Confidence 0114689999999864
No 15
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.51 E-value=1.3e-07 Score=86.84 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=57.1
Q ss_pred HHhcCcEEEEeecC----ceEEEeccCcccccccceecccCCCCCCCCCccceeeeHHHHHHHhcCCcccCCCCCcEEEc
Q 003129 311 RTLKNLRIKTITSN----QEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINV 386 (845)
Q Consensus 311 ~~Lkgl~V~~~~~~----r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~itv~eYf~~~y~i~L~~~p~lP~v~v 386 (845)
..+.|..|.+.|+| +.|+|.+|.+...+.++|+.+ ..+|++|||+++|||.|++ ++||+|.|
T Consensus 39 ~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~-------------~~~Ty~eYyk~KY~I~I~~-~~QPLL~v 104 (122)
T cd02843 39 EDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP-------------EYETFEEYYKKKYKLDIQN-LNQPLLDV 104 (122)
T ss_pred HHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC-------------CCccHHHHHHHhcCeEecc-CCCCcEee
Confidence 57889999999998 899999999988999999533 2799999999999999999 99999998
Q ss_pred CC
Q 003129 387 GK 388 (845)
Q Consensus 387 g~ 388 (845)
..
T Consensus 105 ~~ 106 (122)
T cd02843 105 DH 106 (122)
T ss_pred cC
Confidence 53
No 16
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.034 Score=63.43 Aligned_cols=266 Identities=19% Similarity=0.150 Sum_probs=134.7
Q ss_pred EcCCCeeecCC-CcccCCCCCccccCCceeecCCccceEEEEEe---CCcc--cHHHHHHHHHHHhhhcC-Cc--cCCCc
Q 003129 468 VLPAPRLKFGN-GEDFSPRNGRWNFNNKKLVQPTKIERWAVVNF---SARC--DIRSLVRDLIKCGEMKG-IL--IDQPF 538 (845)
Q Consensus 468 vL~~P~i~~g~-~~~~~~~~g~W~~~~~~f~~p~~i~~Wavv~~---~~~~--~~~~f~~~L~~~~~~~G-~~--i~~P~ 538 (845)
+-.+|.+..|+ |.+.....--|++. .+..|.....|.-+.. +..- -...+.+.+....+..+ +. +.-+.
T Consensus 306 ~ek~pdiv~g~~gktti~n~nl~~yl--py~~p~~~~l~nei~~iv~d~El~~rlk~~~kkv~~~fkn~n~i~~k~eg~~ 383 (685)
T COG1431 306 PEKGPDIVIGTEGKTTIDNVNLFCYL--PYFKPDGTMLWNEISPIVTDSELLTRLKSTIKKVVYGFKNSNGIDWKVEGLT 383 (685)
T ss_pred cccCCceEecccceeeEehhhhhhhh--cccccccceecceeeEEEehhhhhhHHHHHHHHHHHHHHhccchhhhcccce
Confidence 34566776665 33322222334432 2344544455654432 2211 36778888888887766 32 22221
Q ss_pred cccccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeeccc---cChhHH
Q 003129 539 DVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---VNDQYL 615 (845)
Q Consensus 539 ~v~~~~~~~~~~~~~~~ve~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k---~~~q~~ 615 (845)
.... + .+....+.+-.++.++ ....++..-+- ++...|+.+|+ .+.=|++|.+.-.+ .-.-++
T Consensus 384 l~~a---~-~r~~~kddl~~iIkei------d~ee~~k~e~y-kdd~~YailKr---ld~~ipsqvil~~n~rk~~Kg~~ 449 (685)
T COG1431 384 LHVA---G-KRPKMKDDLTKIIKEI------DVEELKKQEMY-KDDVKYAILKR---LDETIPSQVILDPNNRKPYKGTK 449 (685)
T ss_pred eeec---c-cchhhhccchhhhhhh------hhhhhcccccc-ccchHHHHHHh---hcccCcceeeeccccCCcchhhh
Confidence 1110 0 0111112222233332 01123333334 56678999998 45678999998532 234579
Q ss_pred HHHHHHHHhcCCCceeeccccCCCCCCcccCCCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCC
Q 003129 616 TNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPK 694 (845)
Q Consensus 616 ~Ni~lKINaKLGG~n~~l~~~~~~~~p~~~~~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~ 694 (845)
+|+++|+-+|-+|+++.+... . ..-+-|+|+||+..+-|. ..+-|+..-.+. ..+-+|...... ..+
T Consensus 450 tnla~~~~~ktlgqpY~~r~~---~-----gpvDaivGlDvsr~~~gn---~tV~gct~~f~seg~l~eyy~t~tp-a~G 517 (685)
T COG1431 450 TNLASKRYLKTLGQPYLKRNG---L-----GPVDAIVGLDVSRVSEGN---WTVEGCTSCFVSEGGLEEYYHTVTP-ALG 517 (685)
T ss_pred hHHHHHHHHHhcCCceeeecc---C-----CCccceeeeeeeEEeeCC---eEEeeeeEEEeccCceEEeeecccC-Ccc
Confidence 999999999999999987531 1 122589999999986432 233332111111 123344332111 111
Q ss_pred cccccccccccCCcchHHHHHHHHHHHHHhcCCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEE
Q 003129 695 VEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVI 774 (845)
Q Consensus 695 ~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~I 774 (845)
|.... .+-..|.+ .|. +-..-.+|++.|||- +...|++++++.=..++ -..+++
T Consensus 518 -Erl~~----------~g~yle~~-~~~---gfe~~n~iV~lRDG~-------l~~~E~aavkeyg~elg----sn~ev~ 571 (685)
T COG1431 518 -ERLET----------SGRYLEKM-NWR---GFESRNLIVTLRDGK-------LVAGEIAAVKEYGGELG----SNPEVN 571 (685)
T ss_pred -chhhh----------HHHHHHHH-Hhh---hhhccCeeEEEecCc-------cchHHHHHHHHHhhhcC----CChhhh
Confidence 11100 00011111 111 112346799999996 55678777777666553 345566
Q ss_pred EEeeccccccccCC
Q 003129 775 VAQKNHHTKFFQSG 788 (845)
Q Consensus 775 vv~KrhhtRff~~~ 788 (845)
.+-|+..+ ||..+
T Consensus 572 ~i~knNp~-vf~~e 584 (685)
T COG1431 572 RILKNNPW-VFAIE 584 (685)
T ss_pred eecccCCe-EEEec
Confidence 66555544 88654
No 17
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=90.37 E-value=1.8 Score=42.36 Aligned_cols=108 Identities=25% Similarity=0.299 Sum_probs=56.2
Q ss_pred CCCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHh
Q 003129 646 KVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTS 724 (845)
Q Consensus 646 ~~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~ 724 (845)
+.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|+- .++... +-.+| -.+|+|.|..+|+.
T Consensus 9 ~~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~G~~~k~~YR~-f~i~~~--~~~dD----------y~~M~Evl~RR~~~ 71 (155)
T PF08459_consen 9 KLPRRIECFDISHIQG----SDTVGSMVVFENGKPDKSEYRR-FNIKTV--DGGDD----------YAAMREVLTRRFKR 71 (155)
T ss_dssp S--SEEEEEEEEECTT----TCEEEEEEEEETTEE-GGG-EE-EEEE----STT-H----------HHHHHHHHHHHHCC
T ss_pred CCCCEEEEEECcccCC----cccEEEEEEEECCccChhhCce-EecCCC--CCCcH----------HHHHHHHHHHHHhc
Confidence 3578899999999753 2367787776654 22234443 444321 11233 35889998887754
Q ss_pred c---CCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccc
Q 003129 725 S---GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTK 783 (845)
Q Consensus 725 ~---~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtR 783 (845)
. ...+|+-|+| || +.||+. +.++|+++++-. .++.-|+=.+.|.|+
T Consensus 72 ~~~~~~~lPDLilI--DG-G~gQl~--------aa~~~l~~lgl~--i~viglaK~~~~~t~ 120 (155)
T PF08459_consen 72 LKEEKEPLPDLILI--DG-GKGQLN--------AAKEVLKELGLN--IPVIGLAKNDEHKTG 120 (155)
T ss_dssp CHHHT----SEEEE--SS-SHHHHH--------HHHHHHHCTT------EEEEESSSSE---
T ss_pred ccccCCCCCCEEEE--cC-CHHHHH--------HHHHHHHHcCCC--eEEEEEEeccccccc
Confidence 2 1258998888 76 456654 457778776433 444444444556666
No 18
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=83.29 E-value=7.9 Score=46.22 Aligned_cols=110 Identities=32% Similarity=0.357 Sum_probs=66.4
Q ss_pred EEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhcCC
Q 003129 649 TIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGK 727 (845)
Q Consensus 649 tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~ 727 (845)
.-|-++|+||-... -.|+++|.-.|. |.-..|+- .++... +-.+| =.+|+|.|...|.....
T Consensus 382 ~rIE~fDiSh~~G~----~~V~smVvf~~G~~~k~~YR~-f~i~~~--~~~dD----------ya~m~Evl~RR~~r~~~ 444 (574)
T TIGR00194 382 KRIEIFDISHIDGS----QTVGSMVVFEDGKPLKASYRR-YNINSI--TGGDD----------YAAMREVLRRRYSSIQK 444 (574)
T ss_pred CEEEEEECCccCCC----cceEEEEEEeCCccChhhCCe-eecCCC--CCCCH----------HHHHHHHHHHHHhhhcc
Confidence 67899999997642 368888776664 22234442 333211 11233 35888888777754211
Q ss_pred ----CCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEee--ccccccccCC
Q 003129 728 ----RKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQK--NHHTKFFQSG 788 (845)
Q Consensus 728 ----~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~K--rhhtRff~~~ 788 (845)
.+|+-||| || +.||+.. ..+++++++- ...+.+|-..| ||.+++|..+
T Consensus 445 ~~~~~~PDLili--DG-GkgQl~a--------a~~~l~~lg~--~~~i~viglaK~~~~~~~i~~~~ 498 (574)
T TIGR00194 445 KNNLPLPDLILI--DG-GKGQLNA--------ALEVLKSLGV--VNKPIVIGLAKAKRHETDIFLIG 498 (574)
T ss_pred ccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC--CCCCcEEEEEecCCCceEEEeCC
Confidence 48988887 76 4677654 4666666643 11355666666 7778888754
No 19
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=76.60 E-value=21 Score=43.17 Aligned_cols=110 Identities=22% Similarity=0.358 Sum_probs=66.9
Q ss_pred CCCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHh
Q 003129 646 KVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTS 724 (845)
Q Consensus 646 ~~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~ 724 (845)
..|..|-++|+||-... -.|+++|.-.|. |.-..|+- .++.... .-++|. .+|+|.|...|.+
T Consensus 452 ~~p~rIE~fDiSh~~G~----~~VasmVvf~~G~p~k~~YR~-f~ik~~~-~~~DD~----------asM~Evl~RR~~r 515 (691)
T PRK14672 452 RIPTLIEGFDISHLGGK----YTVASLICFKNGAPDTKNYRL-FNLRAHD-TRIDDF----------ASMREAIARRYTH 515 (691)
T ss_pred CCCCeEEEEECCccCCc----CceEEEEEEECCccChhhCCe-eeccCCC-CCCchH----------HHHHHHHHHHhhc
Confidence 35789999999997642 368888876664 22234442 3332210 112442 5888888877754
Q ss_pred cC--CCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeecccccccc
Q 003129 725 SG--KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQ 786 (845)
Q Consensus 725 ~~--~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~ 786 (845)
.. ..+|+-||| || +-||+. +.++++.+++- .+.+|-..||.-.-|+|
T Consensus 516 ~~~~~~~PDLilI--DG-GkgQl~--------aa~~vl~elgl----~i~vigLaKr~e~i~~~ 564 (691)
T PRK14672 516 TPEGYTLPDLILV--DG-GIGHVS--------AAQHVLDALGL----SIPLVGLAKRAEELFIP 564 (691)
T ss_pred ccccCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEecccEEEeC
Confidence 21 258988887 66 456654 45667777643 36677778866444444
No 20
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=70.90 E-value=31 Score=41.75 Aligned_cols=109 Identities=27% Similarity=0.283 Sum_probs=66.5
Q ss_pred CCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhc
Q 003129 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (845)
Q Consensus 647 ~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~ 725 (845)
.|.-|-++|+||-... -.|+++|.-.|. |.-..|+- .++... +-.+| =.+|+|.|...|.+.
T Consensus 414 ~p~rIE~fDiSh~~G~----~~V~smVvf~~G~~~k~~YR~-f~ik~~--~~~dD----------y~~m~Evl~RR~~r~ 476 (621)
T PRK14671 414 LPRRIECFDNSHFQGT----DYVSSMVCFVDGKPKKSDYRK-FKLRSF--EGSDD----------YAAMREVVTRRYSGS 476 (621)
T ss_pred CCCEEEEEECCccCCC----CceEEEEEEECCccChhhCCe-eecCCC--CCCCH----------HHHHHHHHHHHhhcc
Confidence 4678999999997642 367888776664 33345543 333221 11233 358889888777542
Q ss_pred C---CCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccCC
Q 003129 726 G---KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSG 788 (845)
Q Consensus 726 ~---~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~ 788 (845)
. +.+|+-||| || +-||+.. ..+++++++- .+.+|-..||. .++|..+
T Consensus 477 ~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~~lg~----~i~viglaK~~-e~i~~~~ 526 (621)
T PRK14671 477 LAEELPLPDLIVI--DG-GKGQVNS--------AWKVLQELGL----SVPVIGLAKRL-EEIFTPN 526 (621)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCcEEEEEecc-cEEEeCC
Confidence 1 258988887 76 4577654 4667776643 36677777844 5566543
No 21
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=70.89 E-value=34 Score=40.35 Aligned_cols=109 Identities=26% Similarity=0.383 Sum_probs=65.7
Q ss_pred CCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhc
Q 003129 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (845)
Q Consensus 647 ~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~ 725 (845)
.|.-|-|+|+||-... -.|+++|.-.|. |.-..|+- .++... +-.+| =.+|+|.|...|...
T Consensus 365 ~p~rIE~fDiSh~~G~----~~V~smVvf~~G~p~k~~YR~-f~Ik~~--~~~dD----------y~~m~Evl~RR~~r~ 427 (519)
T PRK12306 365 PPNVIECFDISHLSGT----STVGSMVQFRNGKPDKKNYRR-FKIKTV--EGIDD----------FASIAEVVRRRYSRL 427 (519)
T ss_pred CCCeEEEEECCccCCC----CceEEEEEEeCCccChhhcCe-eecCCC--CCCCH----------HHHHHHHHHHHHhhc
Confidence 4667999999997532 367888776664 22234442 333221 11233 358888887776542
Q ss_pred CC---CCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccCC
Q 003129 726 GK---RKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSG 788 (845)
Q Consensus 726 ~~---~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~ 788 (845)
.. .+|+-||| || +-||+.. ..+++.+++- .+.+|-..|+. .++|..+
T Consensus 428 ~~~~~~~PDLilI--DG-GkgQl~a--------a~~~l~elg~----~i~viglaK~~-e~i~~p~ 477 (519)
T PRK12306 428 LEENSELPDLIVI--DG-GKGQLSS--------AFKELRKLGL----KIPLISIAKRE-EEIYVPG 477 (519)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCcEEEEEcCc-eEEEeCC
Confidence 11 48988877 76 4577654 4667776643 36678778876 4455433
No 22
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=69.43 E-value=44 Score=39.99 Aligned_cols=111 Identities=27% Similarity=0.345 Sum_probs=65.8
Q ss_pred CCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhc
Q 003129 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (845)
Q Consensus 647 ~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~ 725 (845)
.|.-|-++|+||-... -.|+++|.-.|. |.-..|+- .++........+| =.+|+|.|...|...
T Consensus 357 ~p~rIE~fDiSh~~G~----~~V~smVvf~~G~~~k~~YRk-f~ik~~~~~~~DD----------~a~M~Evl~RR~~r~ 421 (574)
T PRK14670 357 LPKTIEGFDIAHLNGQ----KTVASLVTFKMGKPFKDGYRV-YKINSLLKGEIDD----------FKAIKEVISRRYSKL 421 (574)
T ss_pred CCCeEEEEECCccCCC----CceEEEEEEECCccChhhCCe-eeccCCCCCCCCH----------HHHHHHHHHHHHhhc
Confidence 4678999999997642 367888776664 22234442 3332210000233 358888888777542
Q ss_pred C---CCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeecccccccc
Q 003129 726 G---KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQ 786 (845)
Q Consensus 726 ~---~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~ 786 (845)
. +.+|+-||| || +-||+.. ..+++.+++- ..++.+|-..|+.-+ +|-
T Consensus 422 ~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~~lg~--~~~i~v~gLaK~~e~-i~~ 471 (574)
T PRK14670 422 INEQLELPNLILI--DG-GKGQLNA--------AYSILKGLKI--ENKVKVCALAKKEET-IFL 471 (574)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC--CCCceEEEEecCCeE-EEe
Confidence 1 248988887 76 4677654 4666766642 223677777786644 544
No 23
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=66.24 E-value=45 Score=39.86 Aligned_cols=109 Identities=22% Similarity=0.250 Sum_probs=66.7
Q ss_pred CCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhc
Q 003129 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (845)
Q Consensus 647 ~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~ 725 (845)
.|.-|-++|+||-... -.|+++|.-.|. |.-..|+- .++... +-.+| =.+|+|.|...|.+.
T Consensus 360 ~p~rIE~fDiSh~~G~----~~V~smVvf~~G~~~k~~YR~-f~i~~~--~~~dD----------~~~m~Evl~RR~~r~ 422 (567)
T PRK14667 360 LPERIEGFDISHFYGE----FTVGSCVVWEDGSMNKKEYRR-YKIKTV--DGIDD----------YASLREVLTRRARRY 422 (567)
T ss_pred CCCeEEEEECcccCCC----cceEEEEEEECCccChhhCCe-eecCCC--CCCCH----------HHHHHHHHHHHhhhc
Confidence 4678999999997532 368888877664 22234442 333321 11233 358889888777642
Q ss_pred C---CCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccCC
Q 003129 726 G---KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSG 788 (845)
Q Consensus 726 ~---~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~ 788 (845)
. +.+|+-||| || +-||+.. ..+++++++- .+.+|-..|+. .++|..+
T Consensus 423 ~~~~~~~PDLili--DG-GkgQl~a--------a~~~l~~lg~----~i~v~glaK~~-e~i~~~~ 472 (567)
T PRK14667 423 KEGENPMPDLWLI--DG-GKGQLSV--------GIEVRDRLGL----NIKVFSLAKKE-EILYTED 472 (567)
T ss_pred cccCCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCcEEEEEecC-cEEEcCC
Confidence 1 148988887 76 4566554 4667777643 35677777766 5566543
No 24
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=64.03 E-value=16 Score=34.00 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 556 ve~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
+...++.++.. ...|.|+++.+.++..+..|...|...+.+.||.+..+.. .....+-+...+-++|.-
T Consensus 16 l~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 16 LKEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 33444555554 3468898888776456788999999999999999998875 556677788888888864
No 25
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=63.68 E-value=56 Score=39.44 Aligned_cols=100 Identities=27% Similarity=0.276 Sum_probs=60.3
Q ss_pred CCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhc
Q 003129 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (845)
Q Consensus 647 ~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~ 725 (845)
.|.-|-++|+||-.. .-.|+++|.-.|. |.-..|+- .++... +-.+| =.+|+|.|...|...
T Consensus 382 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YR~-f~i~~~--~~~dD----------ya~m~Evl~RR~~~~ 444 (598)
T PRK00558 382 PPYRIECFDISHIQG----TATVASMVVFEDGGPDKSEYRR-YNIKGV--TGGDD----------YAAMREVLTRRYSRL 444 (598)
T ss_pred CCCEEEEEECCccCC----CcceEEEEEEECCccChhhCCe-eecCCC--CCCCH----------HHHHHHHHHHHhhcc
Confidence 467899999999753 2368888776663 33345543 333221 11233 358888888777542
Q ss_pred ---CCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEee
Q 003129 726 ---GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQK 778 (845)
Q Consensus 726 ---~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~K 778 (845)
.+.+|+-||| || +-||+.. ..+++++++- .+.+|-..|
T Consensus 445 ~~~~~~~PDLili--DG-GkgQl~~--------a~~~l~~lg~----~i~v~glaK 485 (598)
T PRK00558 445 LKEFGPLPDLILI--DG-GKGQLNA--------AKEVLEELGL----DIPVVGLAK 485 (598)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHCCC----CCcEEEEEe
Confidence 1258988887 76 5677654 4666766643 245555555
No 26
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=60.13 E-value=68 Score=38.80 Aligned_cols=110 Identities=23% Similarity=0.275 Sum_probs=64.9
Q ss_pred CCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhc
Q 003129 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (845)
Q Consensus 647 ~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~ 725 (845)
.|.-|-++|+||-... -.|+++|.-.|. |.-..|+- .++-. .+-.+| =.+|+|.|...|...
T Consensus 395 ~p~rIE~fDiSh~~G~----~~V~smVvf~~G~~~k~~YRk-f~Ik~--~~~~DD----------ya~M~Evl~RR~~r~ 457 (624)
T PRK14669 395 LPSRIECFDISHIQGA----ETVASMVVWEDGKMKKSDYRK-FIIKT--VVGVDD----------FASMREVVTRRYSRL 457 (624)
T ss_pred CCCeEEEEECCccCCC----CceEEEEEEECCccChhhCCe-eecCC--CCCCCH----------HHHHHHHHHHHhhcc
Confidence 4678999999997532 367887766654 22234442 33321 111233 358888887776542
Q ss_pred C--C-CCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccCC
Q 003129 726 G--K-RKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSG 788 (845)
Q Consensus 726 ~--~-~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~ 788 (845)
. + .+|+-||| || +-||+.. ..+++.+++-. .+.+|-..|+.. ++|-.+
T Consensus 458 ~~~~~~~PDLilI--DG-GkgQl~a--------a~~vl~elgl~---~i~vigLaK~~e-~i~~p~ 508 (624)
T PRK14669 458 QEEKQPMPGLVLI--DG-GLGQLHA--------AAEALEAIGIT---DQPLASIAKREE-IIYVFG 508 (624)
T ss_pred ccccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCCC---CCcEEEEecCCe-EEECCC
Confidence 1 1 48988887 76 4677654 46677776431 266777778764 455433
No 27
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.01 E-value=26 Score=38.09 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=50.4
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 557 e~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
.+.++.++++....|.|+++...++..+..|..+|...+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 18 ~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (293)
T PRK14185 18 AAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQD 87 (293)
T ss_pred HHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333445554434468898888877677899999999999999999998875 344445566777788843
No 28
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.52 E-value=38 Score=36.77 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=48.7
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
++.++++....|.|.++...++..+..|...|...+.+.||.+..+.. .....+-+.+.+.++|.-
T Consensus 22 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D 88 (288)
T PRK14171 22 IQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLD 88 (288)
T ss_pred HHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 444444433468898888777577899999999999999999988875 455666677777888743
No 29
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=56.17 E-value=59 Score=33.61 Aligned_cols=81 Identities=26% Similarity=0.350 Sum_probs=43.3
Q ss_pred CCCEEEEEEeeecCCCCCCCCCeEEEEEEecCCCcccceeeEEEeccCCcccccccccccCCcchHHHHHHH--HHHHHH
Q 003129 646 KVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIREL--LLDFYT 723 (845)
Q Consensus 646 ~~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~--L~~f~~ 723 (845)
..+.+|-|+|+||...+ .-.+|++|.- +||...-....++...-....|-.+. .++|. |..-++
T Consensus 23 ~~~~~I~gvDiS~~~~~---~~~vaa~Vv~-~~~~~~~~~~~~~~~~~~~PYIPG~L----------afRE~p~l~~~~~ 88 (208)
T cd06559 23 GEVRLVAGVDVSYKKDG---DLAVAAAVVL-DYPDLEVVETAVAVGEVTFPYIPGLL----------AFREGPPLLEALE 88 (208)
T ss_pred CCccEEEEEEeeeccCC---CeEEEEEEEE-ECCCCcEEEEEEEEEecCCCCcchhH----------HHhhHHHHHHHHH
Confidence 46789999999997521 2345555432 44333333333332222222343332 66666 554445
Q ss_pred hcCCCCCcEEEEEeecCC
Q 003129 724 SSGKRKPEQIIIFRDGVS 741 (845)
Q Consensus 724 ~~~~~~P~~IIiyRDGVS 741 (845)
+- ..+|+-|+|==.|+.
T Consensus 89 ~l-~~~PDlilVDG~G~~ 105 (208)
T cd06559 89 KL-KTKPDLLLVDGHGIA 105 (208)
T ss_pred hC-CCCCCEEEEeCCccc
Confidence 43 367998888555553
No 30
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.46 E-value=38 Score=36.74 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=50.2
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHh
Q 003129 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (845)
Q Consensus 557 e~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINa 624 (845)
.+.++.++++....|.|.++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 18 ~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 18 KTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNA 86 (286)
T ss_pred HHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 333444544433468898888877567899999999999999999988874 44555667788888885
No 31
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=54.40 E-value=87 Score=38.16 Aligned_cols=100 Identities=23% Similarity=0.237 Sum_probs=60.2
Q ss_pred CCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhc
Q 003129 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (845)
Q Consensus 647 ~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~ 725 (845)
.|.-|-++|+||-... -.++|+|.-.|. |.-..|+. .++-.. + .+| -++|+|.+...|.+.
T Consensus 471 ~p~rIE~~DiSh~~G~----~~v~~mVvf~~G~p~k~~YR~-f~i~~~--~-~dD----------~~~m~ev~~RR~~~~ 532 (694)
T PRK14666 471 PPHRIEAVDVSHTGGR----NTRVGMVVFEDGKPARDAYRT-YAFEDG--E-GDD----------YGTLAAWAGRRVESG 532 (694)
T ss_pred CCCEEEEEECcccCCc----CceEEEEEEECCccChhhCCe-eeCCCC--C-CCh----------HHHHHHHHHHHhcCC
Confidence 5678999999997642 357777766654 22234442 333211 1 133 358888888766542
Q ss_pred CCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEee
Q 003129 726 GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQK 778 (845)
Q Consensus 726 ~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~K 778 (845)
..+|+-||| || +-||+.. ..+|+++++-+ ..+.+|-..|
T Consensus 533 -~~~PDLili--DG-G~gQl~a--------a~~~l~e~g~~--~~~~v~~laK 571 (694)
T PRK14666 533 -PPWPDLLLV--DG-GRGQLAA--------VVRALEEAGMG--GLFAVASIAK 571 (694)
T ss_pred -CCCCCEEEE--cC-CHHHHHH--------HHHHHHHcCCC--CCccEEEEec
Confidence 258988877 66 4577654 46677766432 2356676666
No 32
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=53.89 E-value=79 Score=37.95 Aligned_cols=106 Identities=21% Similarity=0.225 Sum_probs=63.8
Q ss_pred CCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhc
Q 003129 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (845)
Q Consensus 647 ~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~ 725 (845)
.|.-|-++|+||-... -.|+++|.-.|. |.-..|+- .++.. + .+| =.+|+|.|...|.+.
T Consensus 374 ~p~rIE~fDiSh~~G~----~~V~s~Vvf~~G~~~k~~YR~-f~i~~-~---~dD----------~~~m~Evl~RR~~r~ 434 (577)
T PRK14668 374 RPERIEGFDVSHAQGR----AVVGSNVCFVDGSAETADYRR-KKLTE-R---NDD----------YANMRELVRWRAERA 434 (577)
T ss_pred CCCEEEEEECCccCCC----CceEEEEEEECCccCHHHcCe-ecCCC-C---CCh----------HHHHHHHHHHHHHhh
Confidence 3668999999997532 368888776664 22234442 33322 1 233 247888887766541
Q ss_pred C-----CCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccC
Q 003129 726 G-----KRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQS 787 (845)
Q Consensus 726 ~-----~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~ 787 (845)
. +.+|+-||| || +-||+. +..+|+.+++- .+.+|-..|+. .++|-.
T Consensus 435 ~~~~~~~~~PDLili--DG-G~gQl~--------aa~~~l~elg~----~i~v~glaK~~-e~i~~~ 485 (577)
T PRK14668 435 VEGRDDRPDPDLLLI--DG-GDGQLG--------AARDALAETGW----DVPAIALAKAE-ELVVTP 485 (577)
T ss_pred hccccCCCCCCEEEE--eC-CHHHHH--------HHHHHHHHcCC----CCcEEEEEcCC-eEEEcC
Confidence 1 258988887 66 456654 44667777643 36677777765 345543
No 33
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.52 E-value=45 Score=36.30 Aligned_cols=66 Identities=15% Similarity=0.289 Sum_probs=48.9
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
++.++.+....|.|+++...++..+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 22 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 22 IDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNND 88 (294)
T ss_pred HHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344444323368898888877677899999999999999999998875 445555577788888844
No 34
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.78 E-value=51 Score=35.76 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=49.1
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
++.++++....|.|.++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 28 i~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D 94 (287)
T PRK14176 28 VERLKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKR 94 (287)
T ss_pred HHHHHhccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344443323368898888877677899999999999999999988775 455555677888888853
No 35
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.59 E-value=45 Score=36.08 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=44.7
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHh
Q 003129 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (845)
Q Consensus 569 ~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINa 624 (845)
..|.|.++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.
T Consensus 30 ~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (281)
T PRK14183 30 IVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNN 86 (281)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 368898888877677899999999999999999988874 44555556778888884
No 36
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.82 E-value=48 Score=36.20 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=49.1
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
++.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 22 v~~l~~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (297)
T PRK14186 22 IESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQD 88 (297)
T ss_pred HHHHHHhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344444333467888888777567899999999999999999988875 455555677888888864
No 37
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=50.77 E-value=45 Score=37.06 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=48.7
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
++.++++....|.|.++.+.++..+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 76 v~~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D 142 (345)
T PLN02897 76 VRKMKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNED 142 (345)
T ss_pred HHHHHhccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344444433468898888877677899999999999999999988875 344444566788888743
No 38
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=49.81 E-value=1.3e+02 Score=35.98 Aligned_cols=122 Identities=26% Similarity=0.334 Sum_probs=69.7
Q ss_pred CCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHh-
Q 003129 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTS- 724 (845)
Q Consensus 647 ~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~- 724 (845)
.|.-|-++|.||-... -.|+++|...+. |.-..|+- ..+. -+-.+| =.+|+|.|..=|..
T Consensus 378 ~p~rIE~~D~Sh~~g~----~~V~smvvf~~g~~~k~~YRr-y~i~---~~~~dD----------ya~m~evl~RR~~~~ 439 (581)
T COG0322 378 APYRIECFDISHIQGE----DTVGSMVVFEDGGPSKKDYRR-YNIK---ITGGDD----------YASMREVLTRRYSRL 439 (581)
T ss_pred CceeEEEeecCccccc----cceeEEEEEcCCCCChhhccc-cccc---CCCCch----------HHHHHHHHHHHhhhc
Confidence 4778899999998643 256777766654 11122321 2121 011222 34777777554433
Q ss_pred cCCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccCCCCCCCCCCceeeCccc
Q 003129 725 SGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGEPFHNFVQ 804 (845)
Q Consensus 725 ~~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~~N~ppGTVVD~~It 804 (845)
-...+|+-|+| || +-||+.. .++++++++-.+ | +|-+.|+-.+-|++. ++.+++-.-.
T Consensus 440 ~~~~~Pdli~i--DG-GkgQl~~--------a~~vl~~l~~~~-~---viglaK~~~~~~~~~-------~~~~~~l~~~ 497 (581)
T COG0322 440 LKEELPDLILI--DG-GKGQLNA--------AKEVLKELGLDI-P---VIGLAKGEEELLLPG-------PGEEFDLPPN 497 (581)
T ss_pred cccCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCCCc-c---EEEEEecCceeEecC-------CCceecCCCC
Confidence 23379976666 66 5677654 466677664332 2 777888888555553 2556665555
Q ss_pred CCcc
Q 003129 805 HKSI 808 (845)
Q Consensus 805 ~P~~ 808 (845)
+|..
T Consensus 498 ~p~l 501 (581)
T COG0322 498 SPAL 501 (581)
T ss_pred CHHH
Confidence 6654
No 39
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.68 E-value=53 Score=35.87 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=49.4
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 558 ~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
..++.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 20 ~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 20 AEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNAD 88 (296)
T ss_pred HHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444444323368898888877677899999999999999999887764 445555566788888865
No 40
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.53 E-value=53 Score=35.60 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=51.1
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHh--cCCCc
Q 003129 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA--KLGGL 629 (845)
Q Consensus 559 ~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINa--KLGG~ 629 (845)
.++.++++....|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|. ..-|+
T Consensus 22 ~i~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GI 95 (284)
T PRK14177 22 TIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGI 95 (284)
T ss_pred HHHHHHhcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeE
Confidence 3444444323358898887776567899999999999999999998875 44566667788888886 33454
No 41
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.22 E-value=48 Score=36.20 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 556 VEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 556 ve~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
+.+.++.++++....|.|+++..-++..+..|..+|...+.+.||.+-.+.. ......-+...+.++|.-
T Consensus 19 lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 89 (297)
T PRK14168 19 IRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNND 89 (297)
T ss_pred HHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334445554433468899888877567899999999999999999987764 455555566788888743
No 42
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=49.06 E-value=54 Score=36.67 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=48.2
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHh
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINa 624 (845)
++.++++....|.|+++...++..+..|...|...+.+.||.+..+.. .....+-+.+.+.++|.
T Consensus 93 v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~ 158 (364)
T PLN02616 93 VSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNN 158 (364)
T ss_pred HHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 444554433468899888877677899999999999999999987764 44555556677778874
No 43
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=49.04 E-value=58 Score=35.56 Aligned_cols=66 Identities=23% Similarity=0.325 Sum_probs=48.1
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
.+.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+...+.++|.-
T Consensus 29 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D 95 (299)
T PLN02516 29 VAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNAN 95 (299)
T ss_pred HHHHHHcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333443323368898887777567899999999999999999988865 455555567777888754
No 44
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.85 E-value=49 Score=35.90 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=50.0
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 557 e~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
...++.++++....|.|+++...++..+..|...|...+.+.||.+..+.. .....+-+...+.++|.-
T Consensus 20 k~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 20 AQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNAD 89 (285)
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333444544323357898887776567899999999999999999988875 345555566777888864
No 45
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.60 E-value=54 Score=35.79 Aligned_cols=66 Identities=15% Similarity=0.255 Sum_probs=48.6
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
++.++++....|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 21 v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 21 VEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNND 87 (295)
T ss_pred HHHHHHccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344443322368898888877677899999999999999999988765 445555567777888854
No 46
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.61 E-value=62 Score=35.16 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=55.0
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeecc-ccChhHHHHHHHHHHhc--CCCceeec
Q 003129 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINAK--LGGLNSLL 633 (845)
Q Consensus 559 ~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~-k~~~q~~~Ni~lKINaK--LGG~n~~l 633 (845)
.++.++++....|.|.++...++..+..|..+|...+.+.||.+..+... .....-+..++-++|.. .-|+|-.+
T Consensus 22 ~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~Vql 99 (283)
T PRK14192 22 RVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQH 99 (283)
T ss_pred HHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeC
Confidence 34444443334688988888776778999999999999999999888763 34445577888889875 66776554
No 47
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.24 E-value=56 Score=35.40 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=47.7
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
++.++++....|.|+++...+...+..|...|...+.+.||.+..+.. ......-+.+++.++|.-
T Consensus 21 v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (282)
T PRK14180 21 VQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNND 87 (282)
T ss_pred HHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344443322367898887776567889999999999999999988865 444555567888888843
No 48
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.85 E-value=59 Score=35.25 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=48.5
Q ss_pred HHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHh
Q 003129 558 KMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (845)
Q Consensus 558 ~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINa 624 (845)
..++.++++ ...|.|+++...++..+..|...|...+.+.||.+..+.. ......-+...+.++|.
T Consensus 19 ~~v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 85 (282)
T PRK14169 19 QTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNH 85 (282)
T ss_pred HHHHHHHhC-CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334444433 2367898888877677899999999999999999988875 34455556788888885
No 49
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.28 E-value=65 Score=34.95 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=48.9
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 559 ~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
.++.++.+....|.|.++...++..+..|...|...+.+.||.+-.+.. ......-+.+++.++|.-
T Consensus 21 ~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 21 KVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQD 88 (284)
T ss_pred HHHHHHhccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444444323368898888877567889999999899999999987764 455556677888888854
No 50
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.55 E-value=63 Score=35.04 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=44.7
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 569 ~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
..|.|+++...++..+..|...|...+.+.||.+..+.. .....+-+.+.+.++|.-
T Consensus 31 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 31 ITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNAD 88 (284)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 368898888777567889999999999999999988875 445555566777888754
No 51
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.13 E-value=64 Score=34.97 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=47.4
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeecc-ccChhHHHHHHHHHHh
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM-RVNDQYLTNVLLKINA 624 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~-k~~~q~~~Ni~lKINa 624 (845)
++.++++ ...|.|+++...++..+..|...|...+.+.||.+..+... .....-+.+.+.++|.
T Consensus 21 v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 21 NQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred HHHHHhC-CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444433 23678888877775678999999999999999999988753 4555556777788885
No 52
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.10 E-value=71 Score=34.67 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=49.0
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 559 ~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
.++.++++....|.|.++..-++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 20 ~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (285)
T PRK14191 20 KIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTD 87 (285)
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444443323468898887777577899999999999999999988765 445555567888888854
No 53
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.58 E-value=67 Score=34.87 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=47.9
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
++.++.+ ...|.|+++...++..+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 23 v~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (284)
T PRK14190 23 VVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNAD 88 (284)
T ss_pred HHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444433 2367888887777567899999999999999999988875 445555567778888865
No 54
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.30 E-value=71 Score=34.98 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=44.5
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHh
Q 003129 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (845)
Q Consensus 569 ~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINa 624 (845)
..|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 32 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 32 IEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 368898888877677899999999999999999988765 44555556677788875
No 55
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.17 E-value=72 Score=34.48 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=48.2
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 557 e~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
...++.++++....|.|.++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 19 k~~i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d 88 (278)
T PRK14172 19 KNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKD 88 (278)
T ss_pred HHHHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333444443311247898888877567888999999999999999987764 445544566777888754
No 56
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.64 E-value=86 Score=34.08 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=45.1
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 569 ~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
..|.|+++...++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 28 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 28 FVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNAD 85 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467898888877567889999999999999999988875 445555577888888854
No 57
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.60 E-value=87 Score=33.99 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=46.5
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHh
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINa 624 (845)
++.++++ ...|.|+++..-++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.
T Consensus 22 i~~l~~~-g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (284)
T PRK14170 22 VAELVKE-GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNE 86 (284)
T ss_pred HHHHHhC-CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344433 2357888888877567899999999999999999988775 34444445677788874
No 58
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.55 E-value=93 Score=33.83 Aligned_cols=56 Identities=20% Similarity=0.319 Sum_probs=44.6
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHh
Q 003129 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (845)
Q Consensus 569 ~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINa 624 (845)
..|.|+++...++..+..|..+|...+.+.||.+..+.. ......-+..++.++|.
T Consensus 25 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 25 TAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNN 81 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 468898888877567899999999999999999988875 44555556688888884
No 59
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.75 E-value=94 Score=33.69 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=44.1
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHh
Q 003129 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (845)
Q Consensus 569 ~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINa 624 (845)
..|.|.++...++..+..|...|...+.+.||.+-.+.. .....+-+.+.+.++|.
T Consensus 29 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 29 VQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNA 85 (282)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 367898888877567899999999999999999987765 44555556777788875
No 60
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.17 E-value=1e+02 Score=33.70 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=44.7
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 569 ~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
..|.|+++...++..+..|...|...+.+.||.+-.+.. ......-+.+.+.++|.-
T Consensus 30 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (297)
T PRK14167 30 VTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNAD 87 (297)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 367898887777567899999999999999999987765 445555577888888854
No 61
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=35.63 E-value=62 Score=39.23 Aligned_cols=11 Identities=0% Similarity=0.311 Sum_probs=5.4
Q ss_pred HHHHHHHhccc
Q 003129 217 RVLDIILRQHA 227 (845)
Q Consensus 217 q~Lniilr~~~ 227 (845)
.+|.-++++-+
T Consensus 733 ~~iqnLik~lP 743 (1102)
T KOG1924|consen 733 SMIQNLIKHLP 743 (1102)
T ss_pred HHHHHHHHhCC
Confidence 44555555544
No 62
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.33 E-value=1.2e+02 Score=32.83 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=45.6
Q ss_pred CCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 568 PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 568 ~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
...|.|+++...++..+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 24 g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 24 GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNED 82 (279)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468898888877567899999999999999999988875 445555567788888754
No 63
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=35.21 E-value=99 Score=33.39 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=48.4
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHh
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINa 624 (845)
.+.++++-...|.|.++...+.-.+..|..+|...+.+.||.+..... ......-+.++..++|+
T Consensus 20 v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~ 85 (283)
T COG0190 20 VEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNA 85 (283)
T ss_pred HHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcC
Confidence 334443323468888888776456899999999999999999998875 45666677788888864
No 64
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.01 E-value=1.3e+02 Score=32.70 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=44.2
Q ss_pred CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHh
Q 003129 569 GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (845)
Q Consensus 569 ~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINa 624 (845)
..|.|.++...++..+..|...|...+.+.||.+-.+.. ......-+...+.++|.
T Consensus 31 ~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 31 HQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred CCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 358898888877677899999999999999999987764 44555556777778874
No 65
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.86 E-value=1.2e+02 Score=33.09 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=43.4
Q ss_pred CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHh
Q 003129 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA 624 (845)
Q Consensus 570 ~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINa 624 (845)
.|.|.++...++..+..|...|...+.+.||.+-.+.. ......-+...+.++|.
T Consensus 32 ~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 32 TPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57898888777567899999999999999999988875 34455556677788874
No 66
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=30.31 E-value=85 Score=38.13 Aligned_cols=10 Identities=0% Similarity=0.325 Sum_probs=5.6
Q ss_pred HHHHHHHHHH
Q 003129 105 KVIDRVQETY 114 (845)
Q Consensus 105 ~i~~~l~~~~ 114 (845)
.++.+|.-++
T Consensus 657 dlfakL~~~F 666 (1102)
T KOG1924|consen 657 DLFAKLALKF 666 (1102)
T ss_pred HHHHHHHHHh
Confidence 4566665554
No 67
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=27.54 E-value=1.1e+02 Score=31.12 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=34.1
Q ss_pred eeEEEEEecCCCceEEEEEEEEEeCCCCCCCCchhHHHHHHHHHHHH
Q 003129 68 TNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETY 114 (845)
Q Consensus 68 tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~ 114 (845)
==+|+..+...+..+|-|.|.+ .+...+|++++-+++.+....
T Consensus 107 f~~Frf~vd~g~~vlYcyEvqv----~~~yR~kGiGk~LL~~l~~~a 149 (202)
T KOG2488|consen 107 FTMFRFTVDTGDPVLYCYEVQV----ASAYRGKGIGKFLLDTLEKLA 149 (202)
T ss_pred EEEEEEEcccCCeEEEEEEEee----hhhhhccChHHHHHHHHHHHH
Confidence 3467877776677899999999 556778999999999887654
No 68
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=20.66 E-value=1.3e+02 Score=22.66 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=19.7
Q ss_pred cchHHHHHHHHHHHHHhcCCCCCcE
Q 003129 708 TEDEGIIRELLLDFYTSSGKRKPEQ 732 (845)
Q Consensus 708 ~~~~~~i~e~L~~f~~~~~~~~P~~ 732 (845)
+++...|-.+|.+||.+.+..+|..
T Consensus 16 teddT~v~r~l~~yY~~k~~~~P~W 40 (41)
T PF14475_consen 16 TEDDTHVHRVLRKYYTEKGRPFPGW 40 (41)
T ss_pred CcchhHHHHHHHHHHHHcCCCCCCc
Confidence 4566789999999999876678863
Done!