Query 003129
Match_columns 845
No_of_seqs 223 out of 1121
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:19:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 3E-148 1E-152 1347.2 71.1 719 48-844 24-770 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 3E-136 1E-140 1238.6 53.5 750 48-844 16-954 (1046)
3 1yvu_A Hypothetical protein AQ 100.0 2.3E-82 7.9E-87 750.0 27.4 534 186-844 77-647 (706)
4 1u04_A Argonaute, hypothetical 100.0 4.1E-76 1.4E-80 695.4 33.0 614 63-844 3-702 (771)
5 2yhb_A QDE-2, post-transcripti 100.0 1.6E-73 5.4E-78 643.8 25.4 319 491-844 2-344 (437)
6 3ho1_A Argonaute; argonaute, p 100.0 2E-63 7E-68 577.5 40.1 592 62-842 5-620 (685)
7 2yha_A Post-transcriptional ge 100.0 3.9E-57 1.3E-61 503.9 26.4 265 491-779 2-286 (388)
8 2w42_A PIWI, putative uncharac 100.0 3.3E-40 1.1E-44 372.4 6.8 309 468-844 5-351 (427)
9 1vyn_A Argonaute2; nucleic aci 99.9 1.1E-26 3.8E-31 222.9 9.9 130 283-426 2-142 (143)
10 4g0o_A Protein argonaute 5; MI 99.9 1.8E-25 6.1E-30 213.8 12.0 132 493-633 2-139 (139)
11 4g0x_A Protein argonaute 1; MI 99.9 9.5E-25 3.3E-29 210.9 12.5 138 493-633 2-147 (147)
12 3luc_A Protein argonaute-2; MI 99.9 1.9E-24 6.5E-29 206.5 12.3 130 492-630 1-138 (138)
13 4g0m_A Protein argonaute 2; MI 99.9 1.4E-24 4.6E-29 210.5 10.2 139 493-633 2-150 (150)
14 2xfm_A MIWI, PIWI-like protein 99.9 1.7E-24 5.7E-29 209.3 7.4 135 284-438 1-150 (150)
15 3mj0_A Protein argonaute-2; ar 99.9 4.9E-23 1.7E-27 191.8 9.8 113 284-410 1-124 (124)
16 3qir_A PIWI-like protein 2; st 99.9 1.9E-23 6.6E-28 200.0 6.1 131 284-435 1-147 (148)
17 1r6z_P Chimera of maltose-bind 99.8 8.4E-21 2.9E-25 221.0 10.0 124 276-413 375-509 (509)
18 3o7v_X PIWI-like protein 1; PI 99.8 1.4E-20 4.9E-25 174.5 9.2 113 286-418 2-123 (124)
19 2qvw_A GLP_546_48378_50642; di 98.6 2.1E-08 7.2E-13 119.7 6.9 85 308-405 151-254 (756)
20 2nrr_A Uvrabc system protein C 83.8 7.1 0.00024 37.0 10.4 105 647-787 16-121 (159)
21 2nrt_A Uvrabc system protein C 74.0 17 0.00057 36.4 10.2 104 647-786 21-125 (220)
22 3qbz_A DDK kinase regulatory s 67.5 1.1 3.8E-05 42.1 0.0 65 715-779 45-117 (160)
23 4b4u_A Bifunctional protein fo 56.0 16 0.00054 38.4 6.3 66 560-625 43-109 (303)
24 4a26_A Putative C-1-tetrahydro 46.5 34 0.0012 35.9 7.0 75 557-631 23-101 (300)
25 3c65_A Uvrabc system protein C 45.9 92 0.0032 31.2 9.8 100 648-779 14-118 (226)
26 1a4i_A Methylenetetrahydrofola 44.4 37 0.0013 35.6 6.8 69 557-625 21-91 (301)
27 4a5o_A Bifunctional protein fo 43.7 40 0.0014 35.1 6.9 73 559-631 24-99 (286)
28 1b0a_A Protein (fold bifunctio 40.6 37 0.0013 35.3 6.1 69 557-625 20-89 (288)
29 2c2x_A Methylenetetrahydrofola 39.6 47 0.0016 34.5 6.7 66 559-625 22-88 (281)
30 3l07_A Bifunctional protein fo 38.4 42 0.0014 34.9 6.1 72 560-631 24-98 (285)
31 3p2o_A Bifunctional protein fo 37.8 50 0.0017 34.4 6.5 74 559-633 23-99 (285)
32 1edz_A 5,10-methylenetetrahydr 29.1 83 0.0029 33.3 6.7 67 557-625 22-89 (320)
33 3ngx_A Bifunctional protein fo 22.2 1.5E+02 0.0051 30.6 6.8 57 568-625 25-82 (276)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=2.9e-148 Score=1347.19 Aligned_cols=719 Identities=31% Similarity=0.551 Sum_probs=623.6
Q ss_pred ccccCCCCCCCCCCCEEEEEeeEEEEEecCCCceEEEEEEEEEeCCCCCCCCchhHHHHHHHHHHHHhhh-cCCCceEee
Q 003129 48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAE-LDGKDFAYD 126 (845)
Q Consensus 48 ~~~~~~Rpg~Gt~G~~i~L~tN~f~v~~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~-~~~~~~~yD 126 (845)
...++.|||+||.|++|.|+||||+|++. ++.+|||||+|.| +.++++++|+|++++.+++..+ |++..+|||
T Consensus 24 ~~~~p~RPg~Gt~G~~i~l~aN~F~v~~~--~~~ly~Y~V~i~p----~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afD 97 (861)
T 4f3t_A 24 AFKPPPRPDFGTSGRTIKLQANFFEMDIP--KIDIYHYELDIKP----EKCPRRVNREIVEHMVQHFKTQIFGDRKPVFD 97 (861)
T ss_dssp -CCCCBCCCCCCCSEEEEEEESEEEEECC--SCEEEEEEEEEES----CSCCHHHHHHHHHHHHHHSCCCCCTTCCCEEC
T ss_pred cccCCCCCCCCCCCcEEEEEeeeEEEECC--CCceeeeeEEeCC----CcCcHHHHHHHHHHHHHHhhhhhhcCceEEEc
Confidence 45678999999999999999999999874 5689999999965 4556789999999999887434 556678999
Q ss_pred CCcceEecCCCCCCcceEEEEeccccccCCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeecccCHHHHHHHHcC
Q 003129 127 GEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRG 206 (845)
Q Consensus 127 G~k~Lfs~~~Lp~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g 206 (845)
|+++|||+++||.++.++++.+... + ..+.++|+|+|+++++|++++|.++|+|
T Consensus 98 G~~~l~s~~~L~~~~~~~~~~v~~~------------~--------------~~~~~~~~V~I~~~~~i~l~~L~~~l~g 151 (861)
T 4f3t_A 98 GRKNLYTAMPLPIGRDKVELEVTLP------------G--------------EGKDRIFKVSIKWVSCVSLQALHDALSG 151 (861)
T ss_dssp SSSEEEESSCCSCSSCEEEEECCC---------------------------------CEEEEEEEEEEEEHHHHHHHHHT
T ss_pred CcceEEECCcCCCCCcceEEEEecC------------C--------------CCCCcEEEEEEEEeeecCHHHHHHHhcC
Confidence 9999999999998654444333210 0 0135789999999999999999999999
Q ss_pred CCCcChHHHHHHHHHHHhccccccCccccccccccCCCCCcccCCCcEEEeecceeEEEEeCCeeEEEEeccccccccCc
Q 003129 207 QESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPG 286 (845)
Q Consensus 207 ~~~~~~~~~lq~Lniilr~~~~~~~~~~~g~~ff~~~~~~~~~lg~g~e~~~Gf~~Svr~~~~gl~LniDvs~~~F~~~~ 286 (845)
...+.++++||+||||||+.++ ..+..+||+||++..+...++|+|+|+|+||++|||+++++|+||+|+++++|++++
T Consensus 152 ~~~~~~~~~iq~Lniilr~~~~-~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~ 230 (861)
T 4f3t_A 152 RLPSVPFETIQALDVVMRHLPS-MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQ 230 (861)
T ss_dssp CSSSCCHHHHHHHHHHHHHHHH-HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCE
T ss_pred CCCCCcHHHHHHHHHHHHhhcc-ccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCC
Confidence 9887889999999999999654 568899999998765544578999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCCC-------CchhHHHHHHHhcCcEEEEee---cCceEEEeccCcccccccceecccCCCCCCCCCc
Q 003129 287 PVVDFLIANQNVRDP-------FSIDWAKAKRTLKNLRIKTIT---SNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEV 356 (845)
Q Consensus 287 ~v~d~l~~~~~~~~~-------~~~d~~~~~~~Lkgl~V~~~~---~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~ 356 (845)
||+|+|.+..+.++. .+.++.+++++|+|++|.++| ++|.|+|.||++.++.+++|.++..+ +
T Consensus 231 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~-------g 303 (861)
T 4f3t_A 231 PVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQES-------G 303 (861)
T ss_dssp EHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSS-------S
T ss_pred cHHHHHHHHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCC-------C
Confidence 999999886554332 233578899999999999999 56899999999999999999865322 1
Q ss_pred cceeeeHHHHHHHhcCCcccCCCCCcEEEcCCCCCCceecccceEEcCCccccccCCHHHHHHHHHHhcCChHHHHHHHH
Q 003129 357 QELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLS 436 (845)
Q Consensus 357 ~~~~itv~eYf~~~y~i~L~~~p~lP~v~vg~~~~~~ylP~Elc~i~~~Qr~~~~ls~~q~~~li~~s~~~P~eR~~~i~ 436 (845)
++.+|||+|||+++|||+|+| |+||||++|+.++++|||||||.|++||+|+++|+++|+++|+++++.+|.+|.+.|.
T Consensus 304 ~~~~iSV~dYFk~kYni~L~~-p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~ 382 (861)
T 4f3t_A 304 QTVECTVAQYFKDRHKLVLRY-PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEIS 382 (861)
T ss_dssp CEEEEEHHHHHHHHHCCCCSC-TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CceeEEHHHHHHHhcCcccCC-CCCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHH
Confidence 235899999999999999999 9999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCccccceeeEecCCceeeeeEEcCCCeeecCCCc--ccCCCCCccccCCceeecCCccceEEEEEeCCc-
Q 003129 437 NALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGE--DFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR- 513 (845)
Q Consensus 437 ~~~~~~~~~~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~--~~~~~~g~W~~~~~~f~~p~~i~~Wavv~~~~~- 513 (845)
++++.++++.+++|++|||+|+++|++|+||||+||+|.||++. ...|.+|+|++++++|++|+++++|++++|+..
T Consensus 383 ~~~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~ 462 (861)
T 4f3t_A 383 KLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQR 462 (861)
T ss_dssp HHHHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTT
T ss_pred HHHHHhcCCCchHHHHCCCEEeCCeeEEEEEEecCceEEecCCcccccCCCCCceeccCCEEccCcccceeEEEEecCcc
Confidence 99999988888999999999999999999999999999999753 257889999999999999999999999998642
Q ss_pred -c---cHHHHHHHHHHHhhhcCCccCC-CccccccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchH
Q 003129 514 -C---DIRSLVRDLIKCGEMKGILIDQ-PFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYG 588 (845)
Q Consensus 514 -~---~~~~f~~~L~~~~~~~G~~i~~-P~~v~~~~~~~~~~~~~~~ve~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~ 588 (845)
+ .++.|++.|.+.|+.+||.+.. |..+... ...++++.+++.+++..+ +++|||||||+ + .+.|+
T Consensus 463 ~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~-------~~~~~~~~~~~~l~~~~~-~~qlvl~Ilp~-~-~~~Y~ 532 (861)
T 4f3t_A 463 QCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYA-------QGADSVEPMFRHLKNTYA-GLQLVVVILPG-K-TPVYA 532 (861)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEEC-------CSSSSHHHHHHHHHHHST-TCCEEEEEESS-S-CTHHH
T ss_pred cccHHHHHHHHHHHHHHHhhCCcccCCCCeEEEec-------CchHHHHHHHHHHHhhcC-CCcEEEEEeCC-C-ccHHH
Confidence 2 5899999999999999999974 5332211 113467888999887653 68999999997 3 68999
Q ss_pred HHHHHhhcccCceeeEeecc---ccChhHHHHHHHHHHhcCCCceeeccccCCCCCCcccCCCEEEEEEeeecCCCCCCC
Q 003129 589 PWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSD 665 (845)
Q Consensus 589 ~iK~~~~~~~gI~TQci~~~---k~~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~~p~~~~~~tMIiG~DVsH~~~~~~~ 665 (845)
.||++||+++||+||||..+ +.++||+.||+||||+||||+||.+.+. ..|.+...+|||||+||+||+++...
T Consensus 533 ~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~ 609 (861)
T 4f3t_A 533 EVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGK 609 (861)
T ss_dssp HHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----C
T ss_pred HHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceecccc---ccccccCCceEEEEEEecccCCCCCC
Confidence 99999999999999999975 4579999999999999999999988642 24555678999999999999988667
Q ss_pred CCeEEEEEEecCCCcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhcCCCCCcEEEEEeecCChhHH
Q 003129 666 IPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQF 745 (845)
Q Consensus 666 ~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGVSEgqf 745 (845)
.|||||||||+|+ ..++|.+.+++|.+++|+|++|. +|++++|.+|++.+ +.+|++|||||||||||||
T Consensus 610 ~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~E~i~~l~---------~~~~~~L~~~~~~~-~~~P~~IiiyRDGVsegq~ 678 (861)
T 4f3t_A 610 KPSIAAVVGSMDA-HPNRYCATVRVQQHRQEIIQDLA---------AMVRELLIQFYKST-RFKPTRIIFYRDGVSEGQF 678 (861)
T ss_dssp CCEEEEEEEECSS-SSCCEEEEEEEESTTCCSCTTHH---------HHHHHHHHHHHHHH-SCCCSEEEEEEESCCGGGH
T ss_pred CceEEEEEEEcCC-CcceEEEEEEEcCCCccHHHHHH---------HHHHHHHHHHHHHh-CCCCceEEEEecCCChHHH
Confidence 8999999999997 79999999999999999999864 69999999999876 5999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccCCC------CCCCCCCceeeCcccCCccccccccchhHH
Q 003129 746 NQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGS------PDNVPPGEPFHNFVQHKSITALDITFENFL 819 (845)
Q Consensus 746 ~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~------~~N~ppGTVVD~~It~P~~~~~~~~~dFfl 819 (845)
.+|+++|+++|++||++++.+|+|+||||||+||||||||+.+. .+||+||||||++||||.+ ||||
T Consensus 679 ~~v~~~Ev~~i~~a~~~~~~~~~P~it~Ivv~Krh~tRff~~~~~~~~~~~~N~~pGTvVD~~it~p~~------~dFy- 751 (861)
T 4f3t_A 679 QQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTE------FDFY- 751 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEECCSCCCEEESSGGGCBTTTTBCCTTEEECSSSSCSSB------CEEE-
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcEEEEEEEccccceeeecCCcccccccCCCCCceeccCccccCCC------CEEE-
Confidence 99999999999999999998999999999999999999999742 4899999999999999987 6888
Q ss_pred HhhHHHhhccccccccccccccccc
Q 003129 820 FMQELLLTTKSVIQETMTSTFVPML 844 (845)
Q Consensus 820 ~~~~~~l~s~~~~qGta~pt~Y~vl 844 (845)
|+||.++|||||||||+||
T Consensus 752 ------L~Sh~~~qGTarPthY~Vl 770 (861)
T 4f3t_A 752 ------LCSHAGIQGTSRPSHYHVL 770 (861)
T ss_dssp ------EECSCCCSSCCCCEEEEEE
T ss_pred ------EEEEecccccccCceEEEE
Confidence 9999999999999999998
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=3.3e-136 Score=1238.64 Aligned_cols=750 Identities=20% Similarity=0.288 Sum_probs=570.8
Q ss_pred ccccCCCCCCCCCCCEEEEEeeEEEEEecCCC-------------------ceEEEEEEEEEeCCCC---------C-CC
Q 003129 48 VRVPISRRGLGSRGQRISLLTNHFKVNVTNVE-------------------GHFYHYSVSVSYEDGR---------P-VD 98 (845)
Q Consensus 48 ~~~~~~Rpg~Gt~G~~i~L~tN~f~v~~~~~~-------------------~~~y~Y~V~i~~~~~~---------~-v~ 98 (845)
-+.++.||||||.|++|.|+||||.|.+.+.. ..+|+|+|+|.++..+ + ..
T Consensus 16 ~~~~p~Rp~yGt~G~~v~l~aN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~ 95 (1046)
T 4f1n_A 16 IYKVENRHDYGTKGTKVDILTNHILLAVGNDVPTEKIDKELVPKLDGWWKTAFIFTYHIDFKPQQKGPPRRGKPVPPQEL 95 (1046)
T ss_dssp CCCCCBCCCCCCCSEEEEEEESEEEEECCTTSCTTTSCTTTSCCCCSTTTSCEEEEEEEEEC-----------------C
T ss_pred cccCCCCCCCCCCCcEEEEEeeEEEEecCCCccccccccccccccccccccceEEEEEEEEcccccccccccccCccccc
Confidence 46788999999999999999999999987430 3899999999875322 1 12
Q ss_pred CchhHHHHHHHHHHHH--hhhcCCCceEeeCCcceEecCCCC---CCcceEEEEec-----cccccCCCCCCCCCCCCCC
Q 003129 99 GKGAGRKVIDRVQETY--NAELDGKDFAYDGEKSLFTVGPLP---RNKLEFTVVLE-----DISSNRNNGNASPDAHGSP 168 (845)
Q Consensus 99 ~k~~~r~i~~~l~~~~--~~~~~~~~~~yDG~k~Lfs~~~Lp---~~~~~~~v~l~-----~~~~~~~~~~~~~~~~~~~ 168 (845)
.+..+++|+..|.++. ...+ +..+||||+++|||..+|| .....|.|... +.... .++.. .+.
T Consensus 96 ~~~k~~~ii~~ll~e~~~~~~~-~~~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~~~~~~----~~~~~--~~~ 168 (1046)
T 4f1n_A 96 SKPKKYELIEALLDEDEILYKY-RDRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKVVPGMG----APSNK--ASL 168 (1046)
T ss_dssp CHHHHHHHHHHHHHSCTTTGGG-TTSEEECSSSEEEESSCGGGSTTCTTCCC----------------------------
T ss_pred chhHHHHHHHHHHHhcchhhhc-CCceeecCccceEECCcCCccccCCCceEEeccccccccCCcc----ccccc--ccc
Confidence 3556788998887651 1223 4459999999999999999 33335555544 11000 00000 000
Q ss_pred CCCccccccCCCCCceEEEEEEeecccCHHHHHHHHcCCCCcC--h---HHHHHHHHHHHhcccccc-C--ccccccccc
Q 003129 169 NGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESEN--S---QEAFRVLDIILRQHAAKQ-G--CLLVRQSFF 240 (845)
Q Consensus 169 ~~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~--~---~~~lq~Lniilr~~~~~~-~--~~~~g~~ff 240 (845)
...|. ...+.++|+|+|+++++|++.+|.++|.|...+. . .+++++|++||++.+... + +...|++||
T Consensus 169 ~~~~~----~~~~~~~~~V~i~~~~~i~l~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~~~i~~vg~nkFF 244 (1046)
T 4f1n_A 169 QKKID----PELEEMVSQITLKFSGKVGLKDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTDDLIFQVQGNKFF 244 (1046)
T ss_dssp -------------CGGGGEEEEEEEEEEGGGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSSSCEEEETTTEEE
T ss_pred ccccc----ccccCceEEEEEEEeeecCHHHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcCCceEEcCCcccc
Confidence 00000 1235788999999999999999999999986432 1 678999999999998765 3 333456788
Q ss_pred cCCC-CCcccCCCcEEEeecceeEEEEeCCeeEEEEeccccccccC-----------------chHHHHHHHhcC-----
Q 003129 241 HNDP-KNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQP-----------------GPVVDFLIANQN----- 297 (845)
Q Consensus 241 ~~~~-~~~~~lg~g~e~~~Gf~~Svr~~~~gl~LniDvs~~~F~~~-----------------~~v~d~l~~~~~----- 297 (845)
..++ ....++|+|+|+|+|||+|||+++++|+||||+++++||++ ++|+|+|.++.+
T Consensus 245 ~~~~~~~~~~Lg~Gle~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~ 324 (1046)
T 4f1n_A 245 IFNNFAKAIPFQIGGYLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAI 324 (1046)
T ss_dssp ECSTTCCEEECSSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCccccCCCcEEEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhcccccc
Confidence 6543 34568999999999999999999999999999999999984 799999877543
Q ss_pred ---------CCCCCchhH-------HHHHHHhcCcEEEEeecC---------------ceEEEeccCcccccccceeccc
Q 003129 298 ---------VRDPFSIDW-------AKAKRTLKNLRIKTITSN---------------QEYKITGLSEKLCKEQMFSLKQ 346 (845)
Q Consensus 298 ---------~~~~~~~d~-------~~~~~~Lkgl~V~~~~~~---------------r~~kI~gi~~~~~~~~~F~~~~ 346 (845)
.+.+...|| .+++++||||+|.++|.+ +.|+|.||+..++.+++|.+++
T Consensus 325 ~~~~~~~~~~~~~~~~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~ 404 (1046)
T 4f1n_A 325 RDIRYNPKTAPPPSVKDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLE 404 (1046)
T ss_dssp HSSSCTTTTSCCCCSSHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC-----
T ss_pred ccccccccccCCCchhhhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccC
Confidence 122333466 789999999999999954 4699999999999999998764
Q ss_pred CCC---C-CCCCCccceeeeHHHHHHHhcCCcccCCCCCcEEEcCCCCCCceecccceEEcCCccccccCCHHHHHHHHH
Q 003129 347 KNV---K-DDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVE 422 (845)
Q Consensus 347 ~~~---~-~~~~~~~~~~itv~eYf~~~y~i~L~~~p~lP~v~vg~~~~~~ylP~Elc~i~~~Qr~~~~ls~~q~~~li~ 422 (845)
++. + +..++ ++.+|||+|||+++||++|+| |+||||++|++ .+|||||||.|++||+|+++|++ +++||+
T Consensus 405 ~~~~~~~~~~~g~-~~~~iTVadYFk~kYni~Lky-P~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIK 478 (1046)
T 4f1n_A 405 SSLKKNSAPKPNE-KPININTIDYFKRKYDITLKY-PDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYID 478 (1046)
T ss_dssp -------------------CHHHHHHHHSCCCCSC-TTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHH
T ss_pred CcccccccccCCc-CceEEEHHHHHHHHhCcccCC-CCCCEEEECCC--CcccccceEEecCCccccccccc--HHHHHH
Confidence 310 0 01111 235899999999999999999 99999999985 37999999999999999999987 479999
Q ss_pred HhcCChHHHHHHHHHHHH-----hccCCCCccccceeeEecCCceeeeeEEcCCCeeecCCCcc----------cCCCCC
Q 003129 423 KSRQKPQERMSVLSNALK-----LSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGED----------FSPRNG 487 (845)
Q Consensus 423 ~s~~~P~eR~~~i~~~~~-----~~~~~~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~~----------~~~~~g 487 (845)
+|+++|.+|++.|.+... .+.++.+++|++|| +|+.+|++|+||||+||.|.||++.. ..+++|
T Consensus 479 fAa~rP~eR~~~I~~~~~~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G 557 (1046)
T 4f1n_A 479 FSAIRPTEKFDLISRLSMPAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKG 557 (1046)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTT
T ss_pred HHccCcHHHHHHHHHHHHHhhhccccccccHhHHhcC-CccCceeeEEEEEcCCCeEeecCCcccccccccccccCccCC
Confidence 999999999999987642 24446788999999 99999999999999999999988642 346789
Q ss_pred ccccCCceeecCCc-cceEEEEEeC-C-c-------ccHHHHHHHHHHHhhhcCCccCCCc-cc-cc-----------cC
Q 003129 488 RWNFNNKKLVQPTK-IERWAVVNFS-A-R-------CDIRSLVRDLIKCGEMKGILIDQPF-DV-FE-----------ES 544 (845)
Q Consensus 488 ~W~~~~~~f~~p~~-i~~Wavv~~~-~-~-------~~~~~f~~~L~~~~~~~G~~i~~P~-~v-~~-----------~~ 544 (845)
+|||++++|++|+. +.+|+++++. . + ++++.|++.|.+.|+.+||.+..|. .+ .. ..
T Consensus 558 ~Wnm~~~kf~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~ 637 (1046)
T 4f1n_A 558 NWNMKGHQFISTPAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGG 637 (1046)
T ss_dssp BCCCTTCCCSBCCSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC------
T ss_pred cccCCCCEEecCCcccceEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCccccccccccccccccc
Confidence 99999999999874 5666665442 2 1 2688999999999999999997641 11 10 00
Q ss_pred ccccCC------------------CchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEee
Q 003129 545 PQFRRS------------------SPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMA 606 (845)
Q Consensus 545 ~~~~~~------------------~~~~~ve~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~ 606 (845)
.+.+.. ......+..+..+.+.. ..++|||||||+++++++|+.||++||+++||+||||.
T Consensus 638 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lvl~Ilp~~~~~~~Y~~IK~~~d~~~gV~TQcv~ 716 (1046)
T 4f1n_A 638 RGGRGGRGSRGGRGGRGAPSGPPTFETSPGEISLLNLLENI-PSNTYILYVLRRGNDSAVYDRLKYITDLKFGALNSCVV 716 (1046)
T ss_dssp ----------------------CCCBCCTTHHHHHHHHHTC-CTTEEEEEEESSSCCHHHHHHHHHHHTTTTCCCEEEEE
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHHhc-CCCCEEEEEecCCCCchHHHHHHHHhhccCCcccEEEe
Confidence 000000 00012344455555544 36899999999933778999999999999999999999
Q ss_pred cc---ccChhHHHHHHHHHHhcCCCceeeccccCCCCCCccc----CCCEEEEEEeeecCCCCCCCCCeEEEEEEecCCC
Q 003129 607 PM---RVNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVS----KVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWP 679 (845)
Q Consensus 607 ~~---k~~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~~p~~~----~~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~~ 679 (845)
.+ +.++||++||+||||+||||+||.|+.. .++++. ..||||||+||+|++++ ..+||||||||+|+
T Consensus 717 ~~t~~k~~~q~~~NI~lKiN~KLGG~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH~p~~--~~~SiaavVaS~d~- 790 (1046)
T 4f1n_A 717 WDNFKKNSIQYNSNVVMKMNLKLLGSNHSLSIE---NNKLLIDKESNLPILVLGSDVTHYPEK--DQNSIASLVGSYDD- 790 (1046)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCBCCEECTT---GGGGGEETTTTEECEEEEEEEECCSST--TCEEEEEEEECCSS-
T ss_pred hhhhccccHHHHHHHHHHHHHhcCCeeeecccc---ccccccccccCCceEEEeeeeecCCCC--CCCeeeEEEEEECC-
Confidence 75 4578999999999999999999999643 234332 35799999999995433 24699999999997
Q ss_pred cccceeeEEEeccC-CcccccccccccCCcchHHHHHHHHHHHHHhcCCCCCcEEEEEeecCChhHHHHHHHHHHHHHHH
Q 003129 680 LISRYRAAVRTQSP-KVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIE 758 (845)
Q Consensus 680 ~~~~y~~~~~~Q~~-~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~ 758 (845)
.+++|.+++++|.+ ++|+|++|. +|+.++|+.|++.+++.+|++|||||||||||||.+|+++|+++|++
T Consensus 791 ~~t~y~s~~~~Q~~~~~Eii~~L~---------~~~~~~L~~y~~~n~~~lP~~IIiYRDGVSEGQf~~Vl~~Ev~~Ik~ 861 (1046)
T 4f1n_A 791 KFTQFPGDYMLQDGPGEEIITNVG---------SLMLNRLKIYQKHNNGKLPTKIMYFRDGVSVDQFSQVVKIEVKSIKE 861 (1046)
T ss_dssp SCCCCCEEEEEEEEETCCSCTTGG---------GGHHHHHHHHHHTTTTCCCSSEEEEEESCCGGGHHHHHHTHHHHHHH
T ss_pred CcCeEeeEEEEecCCCccHHHHHH---------HHHHHHHHHHHHhcCCCCCcEEEEEecCCchHHHHHHHHHHHHHHHH
Confidence 89999999999998 999999875 49999999998876789999999999999999999999999999999
Q ss_pred HHHHcc------CCCCCeEEEEEEeeccccccccCCC--------------CCCCCCCceeeCcccCCccccccccchhH
Q 003129 759 ACKFLD------EKWSPKFAVIVAQKNHHTKFFQSGS--------------PDNVPPGEPFHNFVQHKSITALDITFENF 818 (845)
Q Consensus 759 A~~~~~------~~~~Pkit~Ivv~KrhhtRff~~~~--------------~~N~ppGTVVD~~It~P~~~~~~~~~dFf 818 (845)
||.++. .+|+|+||||||+||||||||+.+. .+||+||||||++||||.+ ||||
T Consensus 862 a~~~~~~~~~~~~~y~Pkit~IVV~KRhhtRfF~~~~~~~d~~g~~~~~~~~~N~~pGTVVD~~It~p~~------~DFy 935 (1046)
T 4f1n_A 862 SVRKFGPQLNGGNKYDPPVTCIATVKRNQVRFIPIQENAKNEKGEEVAVQSMGNVMPGTVVDRGITSVAH------FDFF 935 (1046)
T ss_dssp HHHHHTHHHHTSCCCCCCEEEEEEECSCSCCEEECCSEEECTTSCEEECEETTEECTTEEECSSSSCSSB------EEEE
T ss_pred HHHHhhhhcccccCCCCCEEEEEEecCccceeeeccccccccccccccccccCCCCCCcEeeccccccCc------ceEE
Confidence 999884 5799999999999999999998632 3799999999999999998 6888
Q ss_pred HHhhHHHhhccccccccccccccccc
Q 003129 819 LFMQELLLTTKSVIQETMTSTFVPML 844 (845)
Q Consensus 819 l~~~~~~l~s~~~~qGta~pt~Y~vl 844 (845)
|+||.++||||+||||+||
T Consensus 936 -------L~Sh~~~qGTarPthY~VL 954 (1046)
T 4f1n_A 936 -------IQSHQALKGTGVPCHYWCL 954 (1046)
T ss_dssp -------EECSCCCSSSCCCEEEEEE
T ss_pred -------EEccccCCCcccCcEEEEE
Confidence 9999999999999999998
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=2.3e-82 Score=749.98 Aligned_cols=534 Identities=16% Similarity=0.157 Sum_probs=403.2
Q ss_pred EEEEEeecccCHHHHHHHHcCCCCcChHHHHHHHHHHHhccccccCccccccccccCCCCCccc-CCCcEEEeecceeEE
Q 003129 186 KVEISFAAKIPIQAIANALRGQESENSQEAFRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFAD-VGGGVLGCRGFHSSF 264 (845)
Q Consensus 186 ~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~lq~Lniilr~~~~~~~~~~~g~~ff~~~~~~~~~-lg~g~e~~~Gf~~Sv 264 (845)
+|+|++++++.. .|. .++.+++|+++++|++. ++.+.++||+||++..+...+ -..++|+|+||.+||
T Consensus 77 ~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~--~l~~~~igr~~~~~~~~~~i~~~~~~l~iwPG~~tsi 145 (706)
T 1yvu_A 77 IVELKRVGEEEF-------RGF--QNERECQELFRDFLTKT--KVKDKFISDFYKKFRDKITVQGKNRKIALIPEVNEKV 145 (706)
T ss_dssp CEEEEECCCEEC-------CCC--SCHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHEEECSSCEEEEEEEEEEEE
T ss_pred EEEEEEEEEeec-------cCC--CCCHHHHHHHHHHHHHc--CChHhhhCccccCccccccccCCCCcEEEccCeEEEE
Confidence 566999998872 010 14678999999999886 344558999999876543222 246799999999999
Q ss_pred EEeC-CeeEEEEeccccccccCchHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEeecCceE--EEecc-Cccccccc
Q 003129 265 RTTQ-GGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEY--KITGL-SEKLCKEQ 340 (845)
Q Consensus 265 r~~~-~gl~LniDvs~~~F~~~~~v~d~l~~~~~~~~~~~~d~~~~~~~Lkgl~V~~~~~~r~~--kI~gi-~~~~~~~~ 340 (845)
+..+ ++++||+|++|+ |++.+||+|+|.++... + ..+..+|+|++| +|++| ++...+..
T Consensus 146 ~~~e~~~~~L~~DvshK-vlr~~Tvld~l~~~~~~--~--------------~~~~~~y~n~ty~~riddi~~~~~~P~~ 208 (706)
T 1yvu_A 146 LKSEEGYFLLHLDLKFR-IQPFETLQTLLERNDFN--P--------------KRIRVKPIGIDFVGRVQDVFKAKEKGEE 208 (706)
T ss_dssp EEBSSSCEEEEEEEEEE-EEESSCHHHHHHHCCCC--C--------------TTCEEEETTCCCCEEEEEEEESTTSCHH
T ss_pred EeccCCCeEEEEEeeee-ecccchHHHHHHHhhhc--c--------------hhHHhhcccceeccccCcccccCCCcce
Confidence 9998 999999999999 58999999999983211 1 235577888899 99998 88888888
Q ss_pred ceecccCCCCCCCCCccceeeeHHHHHHHhcCCc--------ccCCCCCcEEEcCCCCC--CceecccceEEcCCccccc
Q 003129 341 MFSLKQKNVKDDDGEVQELEITVYDYFVNNRNID--------LRYSGDLPCINVGKPKR--PTYIPLELCELVSLQRYTK 410 (845)
Q Consensus 341 ~F~~~~~~~~~~~~~~~~~~itv~eYf~~~y~i~--------L~~~p~lP~v~vg~~~~--~~ylP~Elc~i~~~Qr~~~ 410 (845)
+|.. + .++| ||+++|++. .+. +.+|++.. +++. +.+++| ||+++
T Consensus 209 ~f~~-g------------~~iS---Yyk~~~~~~q~ll~~r~~~~-~~~~~~v~-~~~~~p~~lL~p-lc~~t------- 262 (706)
T 1yvu_A 209 FFRL-C------------MERS---THKSSKKAWEELLKNRELRE-KAFLVVLE-KGYTYPATILKP-VLTYE------- 262 (706)
T ss_dssp HHHH-H------------HHTC---SSHHHHHHHHHHHHCHHHHH-HCEEEEET-TSCEEEGGGEEE-CCCCC-------
T ss_pred EecC-C------------CCcc---eEecccCcchhhhhcccccc-CCceEEec-cCCCCCceeecc-ccccC-------
Confidence 8862 1 3677 898888765 334 45555543 3221 334444 66544
Q ss_pred cCCHHHHHHHHHHhcCChHHHHHHHHHHHHhccCCCCccccceeeEecCCceeeeeEEcCCCeeecCCCc--ccCC-CCC
Q 003129 411 ALTNLQRASLVEKSRQKPQERMSVLSNALKLSKYDNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGE--DFSP-RNG 487 (845)
Q Consensus 411 ~ls~~q~~~li~~s~~~P~eR~~~i~~~~~~~~~~~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~--~~~~-~~g 487 (845)
+|+++|+++|+++++++|++|++.|+++++.+ ++.|++|||+|+++|++|+||||++|.|.+++|. ...+ .+|
T Consensus 263 ~Ltd~q~~~mik~t~~~P~~R~~~i~~~~~~~----~~~L~~fGi~i~~~~~~v~gRVLp~P~i~~~~g~~~~~~~~~~~ 338 (706)
T 1yvu_A 263 NLEDEERNEVADIVRMEPGKRLNLIRYILRRY----VKALRDYGWYISPEEERAKGKLNFKDTVLDAKGKNTKVITNLRK 338 (706)
T ss_dssp ------HHHHTSTTSCCHHHHHHHHHHHHHHH----HHHHHTTTEEECSSCEECCEECCCCCCEECSSCCEECCSSCCHH
T ss_pred CCCHHHHHHHHHHHccCHHHHHHHHHHHHHHH----HHHHHHcCCEECCceeecccEEcCCceeecCCCCcceeccCCcc
Confidence 58999999999999999999999999998874 5789999999999999999999999999965443 3333 345
Q ss_pred ccccCCceeecCCccce---EEEEEeCCcc-cHHHHHHHHHHHhhhcCCccCCCccccccCccccCCCchHHHHHHHHHH
Q 003129 488 RWNFNNKKLVQPTKIER---WAVVNFSARC-DIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEI 563 (845)
Q Consensus 488 ~W~~~~~~f~~p~~i~~---Wavv~~~~~~-~~~~f~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~ve~~~~~l 563 (845)
.|++++ +|+.++.++. |+++ +..++ +++.|++.|.+.|+.+||.++.|...... .++++.+++.+
T Consensus 339 ~~~~~~-~~~~~~~l~~~~lW~~i-~~~~~~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~---------~~~~~~~~~~l 407 (706)
T 1yvu_A 339 FLELCR-PFVKKDVLSVEIISVSV-YKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLIL---------AQTREEAKEKL 407 (706)
T ss_dssp HHHHCC-CCCSCSEEEEEEEEEEC------CHHHHHHHHHHHHHHTTTCEEEEEEEEEEE---------CSSTTHHHHHH
T ss_pred cccccC-ceecccccccceEEEEE-ecchhHHHHHHHHHHHHHHHHcCceecCCcccccc---------chhHHHHHHHH
Confidence 566654 5778888999 9555 33333 58999999999999999999877433211 12334555655
Q ss_pred HhhC--CCCCeEEEEEcCCCC-------CCcchHHHHHHhhcccCceeeEeecccc----ChhHHHHHHHHHHhcCCCce
Q 003129 564 QSKL--PGAPQFLLCLLPERK-------NSDLYGPWKRKNLADFGIVTQCMAPMRV----NDQYLTNVLLKINAKLGGLN 630 (845)
Q Consensus 564 ~~~~--~~~~~~vl~Ilp~~~-------~~~~Y~~iK~~~~~~~gI~TQci~~~k~----~~q~~~Ni~lKINaKLGG~n 630 (845)
+..+ ..+++|+|||+|+ + +.+.|+.||++|+ ++||+||||..+++ +.|++.||++|||+||||+|
T Consensus 408 ~~~~~~~~~~qlvlvIlp~-~~~~~~~~~~~~Y~~IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~n 485 (706)
T 1yvu_A 408 IPVINKIKDVDLVIVFLEE-YPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIP 485 (706)
T ss_dssp HHHHTTTSSCSEEEEEEC-----------CHHHHHHHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHhcccCCCcEEEEEECC-ccccccccCccHHHHHHHHHh-cCCCceEEEehhhccccchHHHHHHHHHHHHHHhCCee
Confidence 5432 2468999999999 6 6789999999966 89999999997643 46899999999999999999
Q ss_pred eeccccCCCCCCcccCCCEEEEEEeeecCCCCCCCCCeEEEEEEecCCC-cccceeeEEEeccCCcccccccccccCCcc
Q 003129 631 SLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWP-LISRYRAAVRTQSPKVEMIDSLFKKVSDTE 709 (845)
Q Consensus 631 ~~l~~~~~~~~p~~~~~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~~-~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~ 709 (845)
|.|+. | ...+|||||+||+|++.+. ..||++|+|||+|.. ..++|.+....|. ++|++++
T Consensus 486 w~L~~------~--~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~d~~g~~~~~~~~~~~q~-~~ei~~~--------- 546 (706)
T 1yvu_A 486 YKLKE------I--EGKVDAFVGIDISRITRDG-KTVNAVAFTKIFNSKGELVRYYLTSYPAF-GEKLTEK--------- 546 (706)
T ss_dssp CEESC------C--TTCCSEEEEECEEECCCSS-SCCCEEEEEEEECTTSCEEEEEEEEECSC-TTHHHHH---------
T ss_pred eeecc------C--CCCceEEEEEEEeccCCCC-CCceEEEEEEEEcCCCCEEEEEEEecccc-cchHHHH---------
Confidence 99963 2 2368999999999997543 359999999999841 2578887766554 6787765
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccCCC
Q 003129 710 DEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQSGS 789 (845)
Q Consensus 710 ~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~ 789 (845)
++..+|+.|. ++++.+|+||||||||||| ++|+++|++||++ |.|++|||||+||||+|||+.+
T Consensus 547 ---l~~~~l~~~~-~~~~~~P~rIIiyRDGVse-------~~El~~Ik~A~~~----~~pkit~IvV~Krh~tRfF~~~- 610 (706)
T 1yvu_A 547 ---AIGDVFSLLE-KLGFKKGSKIVVHRDGRLY-------RDEVAAFKKYGEL----YGYSLELLEIIKRNNPRFFSNE- 610 (706)
T ss_dssp ---HHHHHHHHHH-HTTCCTTCEEEEEESSCCC-------HHHHHHHHHHHHH----HTCEEEEEEEECSSCCCEECSC-
T ss_pred ---HHHHHHHHHH-HhcCCCCcEEEEEeCCCCc-------HHHHHHHHHHHHH----cCCcEEEEEEEeccCeeEECCC-
Confidence 4555566654 4567999999999999999 8899999999987 4799999999999999999974
Q ss_pred CCCCCCCceeeCcccCCccccccccchhHHHhhHHHhhccccccccccccccc-cc
Q 003129 790 PDNVPPGEPFHNFVQHKSITALDITFENFLFMQELLLTTKSVIQETMTSTFVP-ML 844 (845)
Q Consensus 790 ~~N~ppGTVVD~~It~P~~~~~~~~~dFfl~~~~~~l~s~~~~qGta~pt~Y~-vl 844 (845)
||+||||||. +. +||| |+.+|.++|||++||||+ |+
T Consensus 611 --np~pGTvVD~----~~-------~~ff------L~ss~~~~qGT~rPthY~vv~ 647 (706)
T 1yvu_A 611 --KFIKGYFYKL----SE-------DSVI------LATYNQVYEGTHQPIKVRKVY 647 (706)
T ss_dssp --SCCTTEEEEB----SS-------SEEE------ECCSCCCSTTCCCCEEEEEEE
T ss_pred --CCCCeEEEEc----CC-------CeEE------EEecCCccCCCCCCEEEEEEe
Confidence 7999999993 11 3556 355667799999999999 54
No 4
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=4.1e-76 Score=695.41 Aligned_cols=614 Identities=14% Similarity=0.104 Sum_probs=430.7
Q ss_pred EEEEEeeEEEEEec-CCCceEEEEEEEEEeCCCCCCCCchhHHHHHHHHHHHHhhhcCCCceEeeCCcc--eEecCCCCC
Q 003129 63 RISLLTNHFKVNVT-NVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKS--LFTVGPLPR 139 (845)
Q Consensus 63 ~i~L~tN~f~v~~~-~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~~~~~~~~yDG~k~--Lfs~~~Lp~ 139 (845)
+..|.+|||+|... .++ .+|||+|++ +|+++.+ ++..++..+.+. + | .++|||. . ||++++|+-
T Consensus 3 ~~~~~~n~~~~~~~~~~~-~~y~y~v~~----~p~~~~~-~~~~~~~~~~~~----~-g-~~~fdg~-~~~l~~~~~l~~ 69 (771)
T 1u04_A 3 KAIVVINLVKINKKIIPD-KIYVYRLFN----DPEEELQ-KEGYSIYRLAYE----N-V-GIVIDPE-NLIIATTKELEY 69 (771)
T ss_dssp EEEEEBSEEEBCGGGSCS-CEEEEEC-----------------CCHHHHHHH----T-T-EEEEETT-TTEEEESSCCCC
T ss_pred ceEEEeeeEEEecccCCC-eeEEEEeec----CChHHHH-HHHHHHHHHHhh----c-C-cEEecCc-ceeeeccceecc
Confidence 57899999999852 466 899999999 5677766 666777766543 3 5 7999997 6 999988861
Q ss_pred CcceEEEEeccccccCCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeecccCHHHHHHHHcCCCCcChHHHHHHH
Q 003129 140 NKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAFRVL 219 (845)
Q Consensus 140 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~lq~L 219 (845)
++..+.|+++.+++++ +|++
T Consensus 70 -----------------------------------------~~~~~~~~~~~~~~~~-------------------~~~~ 89 (771)
T 1u04_A 70 -----------------------------------------EGEFIPEGEISFSELR-------------------NDYQ 89 (771)
T ss_dssp -----------------------------------------SSCCEEEEEECGGGSC-------------------HHHH
T ss_pred -----------------------------------------CCCeEEEEEEEcceec-------------------HHHH
Confidence 1335788888888775 6889
Q ss_pred HHHHhccccccC-----ccccccccccCCCCCcccCCCcEEEeecceeEEEEeCCeeEEEEeccccccccCchHHHHHHH
Q 003129 220 DIILRQHAAKQG-----CLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIA 294 (845)
Q Consensus 220 niilr~~~~~~~-----~~~~g~~ff~~~~~~~~~lg~g~e~~~Gf~~Svr~~~~gl~LniDvs~~~F~~~~~v~d~l~~ 294 (845)
|+++|..+...+ ...+||+||++ . . -+.+++|+||.+||+..+++++|++|++|++ .+.+||+|+|.+
T Consensus 90 n~i~r~~l~~~~~~~~~l~~~~r~~~~~--~---~-~~~~~~~~~~~tsi~~~e~~~ll~~di~hkv-~r~~t~~d~~~~ 162 (771)
T 1u04_A 90 SKLVLRLLKENGIGEYELSKLLRKFRKP--K---T-FGDYKVIPSVEMSVIKHDEDFYLVIHIIHQI-QSMKTLWELVNK 162 (771)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHTTTSCC--E---E-ETTEEEEEEEEEEEEECSSCEEEEEEEEEEE-EESSCHHHHTTT
T ss_pred HHHHHHHHHHcccchHHHHHHhhhcCCC--c---c-ccccEEEECceeeEEecCCceEEEEEeeeeE-eehhHHHHHHHH
Confidence 999999988877 67889999987 1 2 2578999999999999999999999999999 788999999975
Q ss_pred hcCCCCCCchhHHHHHHHhcCcEEEEe--------e--cCceEEEeccCccccccc--ce---ecccCCCCCCCCCccce
Q 003129 295 NQNVRDPFSIDWAKAKRTLKNLRIKTI--------T--SNQEYKITGLSEKLCKEQ--MF---SLKQKNVKDDDGEVQEL 359 (845)
Q Consensus 295 ~~~~~~~~~~d~~~~~~~Lkgl~V~~~--------~--~~r~~kI~gi~~~~~~~~--~F---~~~~~~~~~~~~~~~~~ 359 (845)
..+ ..++..+...|..|.+. | |+++|++++ .++..+.. +| ..+++- .
T Consensus 163 ~~~-------~~~~~~~~~~g~~~~~~~~~~~~~vy~~n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~~----------~ 224 (771)
T 1u04_A 163 DPK-------ELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKP-KLDHNQEIVKYWYNYHIERYW----------N 224 (771)
T ss_dssp CHH-------HHHHHHHHSTTTCEEEETTSTTCCEEEECBCTTSSCB-CEECCHHHHHHHHHHHHHHHC----------C
T ss_pred HHH-------HHHHHHHhccCcEEeeeccccceeEeecccceeecCC-ccccCCCChhheeceeecCCC----------C
Confidence 321 23455566778777666 6 777787765 44433333 45 533210 2
Q ss_pred eeeHHHHHHHhcCCcccCCCCCcEEEcCCC-------CCCceecccceEEcCCccccccCCHHHHHHHHHHhcCChHHHH
Q 003129 360 EITVYDYFVNNRNIDLRYSGDLPCINVGKP-------KRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERM 432 (845)
Q Consensus 360 ~itv~eYf~~~y~i~L~~~p~lP~v~vg~~-------~~~~ylP~Elc~i~~~Qr~~~~ls~~q~~~li~~s~~~P~eR~ 432 (845)
++++.+||.++|++ ++ .+||+|..... .+.+||.||||.++|. ..+++...+++|..+++..|++|.
T Consensus 225 ~~~~~~~y~~~y~i--~d-~~QPllvs~~~~~~~~~~~~~i~LiPELc~~TG~---~~~~~~~~MK~la~~trl~P~~R~ 298 (771)
T 1u04_A 225 TPEAKLEFYRKFGQ--VD-LKQPAILAKFASKIKKNKNYKIYLLPQLVVPTYN---AEQLESDVAKEILEYTKLMPEERK 298 (771)
T ss_dssp SHHHHHHHHHHHCS--CC-TTSCEEEEEESCC-----CCCEEECTTTEEEEEE---GGGC----CCHHHHHHCCCHHHHH
T ss_pred CcchhHHHHHhcCc--Cc-CCCCeEEecchhhccCCCCceeeechHhhhhcCc---hhhhhHHHHHHHHHHHCCCHHHHH
Confidence 56777777799995 77 99999987431 2469999999999983 334444556789999999999999
Q ss_pred HHHHHHHHhc-----cCC--CCccccceeeEecCCceeeeeEEcCCCeeecCCCcccCCCCCccc--cCCceeecCCc--
Q 003129 433 SVLSNALKLS-----KYD--NEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWN--FNNKKLVQPTK-- 501 (845)
Q Consensus 433 ~~i~~~~~~~-----~~~--~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~~~~~~~g~W~--~~~~~f~~p~~-- 501 (845)
+.|.++++++ .-+ ....|+.|| .++.. +.|.++++.+-.+.+++ ...+..+.|. +++.+++.+..
T Consensus 299 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~-~l~~~-~~v~~~~~~~~~i~~~~--~~~~~~adW~~~~~~~~~~~~~~~p 374 (771)
T 1u04_A 299 ELLENILAEVDSDIIDKSLSEIEVEKIAQ-ELENK-IRVRDDKGNSVPISQLN--VQKSQLLLWTNYSRKYPVILPYEVP 374 (771)
T ss_dssp HHHHHHHHHCCCSSBCSSCCEEEEEECCG-GGGSS-EEEECSSSCEEESCCC----------CGGGGSCCCCCCCCSBCC
T ss_pred HHHHHHHHHhhhhhhcCCHHHHHHHhhhh-ccCcC-cccccccccccceeecC--cCCCccCCcchhhCCCcceecccch
Confidence 9999999998 322 345677787 57766 77666655554455444 1224568995 56777765543
Q ss_pred --cc------eEEEEEeCCcccHHHHH---------HHHHHHhhhcCCc---------cCCCccccccCcccc--CCCch
Q 003129 502 --IE------RWAVVNFSARCDIRSLV---------RDLIKCGEMKGIL---------IDQPFDVFEESPQFR--RSSPV 553 (845)
Q Consensus 502 --i~------~Wavv~~~~~~~~~~f~---------~~L~~~~~~~G~~---------i~~P~~v~~~~~~~~--~~~~~ 553 (845)
++ .|++++-.....+++|+ +.|.++++.+|+. ++-|..-+...+... ....+
T Consensus 375 ~~l~~~~~i~~wil~~~~~~~~~~~f~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~ 454 (771)
T 1u04_A 375 EKFRKIREIPMFIILDSGLLADIQNFATNEFRELVKSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSD 454 (771)
T ss_dssp THHHHCCCCCEEEEEETTSCHHHHHHHHHHHHHHHHHHCC-----------------------------CEEEEECTTSH
T ss_pred hhhhcccccceEEEEeCCchHHHHHHHHHHhhhHHHHHHHHHhhcccchhhcccccccccCCCcccccCcceecccccch
Confidence 44 47666543333677777 4454544333332 333331000001000 00113
Q ss_pred HHHHHHHHHHHhhC-CCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeeccccC------------hhHHHHHHH
Q 003129 554 VRVEKMFDEIQSKL-PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVN------------DQYLTNVLL 620 (845)
Q Consensus 554 ~~ve~~~~~l~~~~-~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k~~------------~q~~~Ni~l 620 (845)
+.++.+++.+.+.+ ...++|+||+++..++.+.|+.||++| .+.||+||||.++++. .+++.||++
T Consensus 455 ~~i~~~l~~~~~~~~~~~~~lvlv~l~~~~~~d~Y~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIal 533 (771)
T 1u04_A 455 KGIIEVVEQVSSFMKGKELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLF 533 (771)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEEcCCCCcchHHHHHHHH-hcCCcccEEEecccccCccccccccchhHHHHHHHHH
Confidence 56777888876654 246799877775425678999999998 6899999999976531 568999999
Q ss_pred HHHhcCCCceeeccccCCCCCCcccCCCEEEEEEeeecCCCCCCCCCeEEEEEEecCCCcccceeeEEEeccCCcccccc
Q 003129 621 KINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLISRYRAAVRTQSPKVEMIDS 700 (845)
Q Consensus 621 KINaKLGG~n~~l~~~~~~~~p~~~~~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~~~~E~i~~ 700 (845)
||||||||+||.|+. |. .+|||||+||+|+++++ ..++++|+|+|.++ ...+|.+.+..|.++ |+++
T Consensus 534 qIn~KLGG~pW~L~~------p~---~~tmiIGiDV~H~~~~~-~svs~~A~V~s~dg-~~~~~~s~~~~~~~~-E~i~- 600 (771)
T 1u04_A 534 QVLSKLGVKYYVLDY------RF---NYDYIIGIDVAPMKRSE-GYIGGSAVMFDSQG-YIRKIVPIKIGEQRG-ESVD- 600 (771)
T ss_dssp HHHHHTTCBCCEESC------CC---SSSEEEEEEEEEECCTT-TCEEEEEEEEETTS-CEEEEEEEECCCCSS-SSCC-
T ss_pred HHHHHhCCcceeecC------CC---CCEEEEEEEEEcCCCCC-CceEEEEEEECCCC-CEEEEEEEEeecCCc-cEEc-
Confidence 999999999999952 32 68999999999996543 46788899999886 777887755545554 4454
Q ss_pred cccccCCcchHHHHHHHHHHHHHhcCCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeecc
Q 003129 701 LFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNH 780 (845)
Q Consensus 701 l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~Krh 780 (845)
+ +.|++++|.+|++.|++.+|+||||||||+ |+++|+++|++||.+. .|++|||+|+|||
T Consensus 601 l---------~~~l~~~L~~y~~~n~~~lP~RIIiyRDG~-------v~~~El~~i~ea~~~~----~p~itfIvV~Krh 660 (771)
T 1u04_A 601 M---------NEFFKEMVDKFKEFNIKLDNKKILLLRDGR-------ITNNEEEGLKYISEMF----DIEVVTMDVIKNH 660 (771)
T ss_dssp H---------HHHHHHHHHHHHHTTCCCTTCEEEEECSBC-------CCHHHHHHHHHHHHHH----TCEEEEEEEESCC
T ss_pred H---------HHHHHHHHHHHHHHhCCCCCCEEEEEcCCC-------CCHHHHHHHHHHHHhc----CCCEEEEEEEecC
Confidence 3 359999999998876679999999999997 7889999999999864 5899999999999
Q ss_pred ccccccCCCCCCCCCCceeeCcccCCccccccccchhHHHhhHHHhhccccc--ccccccccc--ccc
Q 003129 781 HTKFFQSGSPDNVPPGEPFHNFVQHKSITALDITFENFLFMQELLLTTKSVI--QETMTSTFV--PML 844 (845)
Q Consensus 781 htRff~~~~~~N~ppGTVVD~~It~P~~~~~~~~~dFfl~~~~~~l~s~~~~--qGta~pt~Y--~vl 844 (845)
||||| . |.+|||||| . ||| |+||.+. |||++|||| +||
T Consensus 661 ~tRfF-~----~~~pGTVV~-------------~-DFy-------L~Sh~v~~~qGTprPthY~~~Vi 702 (771)
T 1u04_A 661 PVRAF-A----NMKMYFNLG-------------G-AIY-------LIPHKLKQAKGTPIPIKLAKKRI 702 (771)
T ss_dssp CCCBS-S----CSCEEEEET-------------T-EEE-------EECSCCSSSCSCCCCEEEEEEEE
T ss_pred ceeee-c----CCCCeeEEe-------------C-CEE-------EEeccccCCCCCCCCEEEEEEEE
Confidence 99999 3 357999993 1 567 8999765 999999999 775
No 5
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=1.6e-73 Score=643.79 Aligned_cols=319 Identities=27% Similarity=0.425 Sum_probs=225.5
Q ss_pred cCCceeec-CCccceEEEEEeCCc---ccHHHHHHHHHHHhhhcCCccCCCccccccCccccCCCchHHHHHHHHHHHhh
Q 003129 491 FNNKKLVQ-PTKIERWAVVNFSAR---CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSK 566 (845)
Q Consensus 491 ~~~~~f~~-p~~i~~Wavv~~~~~---~~~~~f~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~ve~~~~~l~~~ 566 (845)
+++++|++ ++++++|++++++.+ .+++.|++.|.+.|+.+||.+..|....... ...+.+..+ .++.+...
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~---~~~~~~~~~--~~~~~~~~ 76 (437)
T 2yhb_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM---SVPGSEKEF--FAKVKELM 76 (437)
T ss_dssp ---CCCSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE---ECCSSHHHH--HHHHHHHH
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceec---CCCchHHHH--HHHHhhcc
Confidence 46789999 689999999999543 3799999999999999999998875321100 011111222 12333221
Q ss_pred CCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeeccc---cChh--HHHHHHHHHHhcCCCceeeccccCCCCC
Q 003129 567 LPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---VNDQ--YLTNVLLKINAKLGGLNSLLAVEHSPSI 641 (845)
Q Consensus 567 ~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k---~~~q--~~~Ni~lKINaKLGG~n~~l~~~~~~~~ 641 (845)
.+++|+|||||+ ++.++|+.||++||+++||+||||..++ .++| |++||+||||+||||+||.|+. .+
T Consensus 77 --~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~----~~ 149 (437)
T 2yhb_A 77 --SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PI 149 (437)
T ss_dssp --HTCSEEEEEESS-CCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSS----CC
T ss_pred --CCCcEEEEEECC-CChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceeccc----cc
Confidence 368999999998 7788999999999999999999999854 5788 9999999999999999999964 35
Q ss_pred CcccCCCEEEEEEeeecCC---CC--CCCCCeEEEEEEecCCCcccceeeEEEecc-CCcccccccccccCCcchHHHHH
Q 003129 642 PIVSKVPTIILGMDVSHGS---PG--HSDIPSIAAVVSSRHWPLISRYRAAVRTQS-PKVEMIDSLFKKVSDTEDEGIIR 715 (845)
Q Consensus 642 p~~~~~~tMIiG~DVsH~~---~~--~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~~~~~~~~i~ 715 (845)
|++.+.+|||||+||+||+ || ....|||||+|||+|. ..++|.+.+++|. +++|+|++|. +|++
T Consensus 150 ~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l~---------~~~~ 219 (437)
T 2yhb_A 150 PLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQFT---------DKFK 219 (437)
T ss_dssp HHHHTTCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHHH---------HHHH
T ss_pred cccCCCCEEEEEEEEeccccccCCCcCCCCCEEEEEEEecCC-CcCeeeeEEEEcCCcchhHHHHHH---------HHHH
Confidence 6666789999999999998 77 3357999999999995 8999999999999 9999999864 6999
Q ss_pred HHHHHHHH--hcCCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCC-CCeEEEEEEeeccccccccCCC---
Q 003129 716 ELLLDFYT--SSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKW-SPKFAVIVAQKNHHTKFFQSGS--- 789 (845)
Q Consensus 716 e~L~~f~~--~~~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~-~Pkit~Ivv~KrhhtRff~~~~--- 789 (845)
++|+.|++ .+++.+|+||||||||||||||.+|+++|+++|++||++++.+| +|+||||||+||||||||+.+.
T Consensus 220 ~~L~~~~~~~~~~~~~P~rIiiyRDGVseGqf~~V~~~El~~i~~a~~~~~~~~~~p~it~Ivv~Krh~tRff~~~~~~~ 299 (437)
T 2yhb_A 220 TRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKRHQTRFFPTDPKHI 299 (437)
T ss_dssp HHHHHHHTCGGGTTCCCSEEEEEEESCCTTTHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC---------------
T ss_pred HHHHHHHhhhhhcCCCCceEEEEeCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCCCEEEEEEEecccceeccCCcccc
Confidence 99999987 35679999999999999999999999999999999999998877 8999999999999999999653
Q ss_pred ---CCCCCCCceeeCcccCCccccccccchhHHHhhHHHhhccccccccccccccccc
Q 003129 790 ---PDNVPPGEPFHNFVQHKSITALDITFENFLFMQELLLTTKSVIQETMTSTFVPML 844 (845)
Q Consensus 790 ---~~N~ppGTVVD~~It~P~~~~~~~~~dFfl~~~~~~l~s~~~~qGta~pt~Y~vl 844 (845)
.+|||||||||++||||.+ |||| |+||.++|||+|||||+||
T Consensus 300 ~~~~~N~~pGTvVD~~it~p~~------~dFy-------L~Sh~~~qGTarPthY~Vl 344 (437)
T 2yhb_A 300 HFKSKSPKEGTVVDRGVTNVRY------WDFF-------LQAHASLQGTARSAHYTVL 344 (437)
T ss_dssp -----------------------------------------------------CEEEE
T ss_pred ccccCCCCCceEecccccCCCC------ceEE-------EEecccccccCCceEEEEE
Confidence 3799999999999999998 6888 9999999999999999998
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=2e-63 Score=577.54 Aligned_cols=592 Identities=15% Similarity=0.151 Sum_probs=416.0
Q ss_pred CEEEEEeeEEEEE-ecCCCceEEEEEEEEEeCCCCCCCCchhHHHHHHHHHHHHhhhcCCCceEeeCCcceEecCCCCCC
Q 003129 62 QRISLLTNHFKVN-VTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRN 140 (845)
Q Consensus 62 ~~i~L~tN~f~v~-~~~~~~~~y~Y~V~i~~~~~~~v~~k~~~r~i~~~l~~~~~~~~~~~~~~yDG~k~Lfs~~~Lp~~ 140 (845)
..+.|.-|-|.++ +...+..+|.|.|.+.+.++ .+--..++.+++.. + |...+==|. .|.|-++ |..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~----~-~~~~~~~~~-~~~~~~~-~~~ 72 (685)
T 3ho1_A 5 GKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPG-----REEVYPLLAQVARR----A-GGVTVRMGD-GLASWSP-PEV 72 (685)
T ss_dssp CCEEEEEEEEEEEECCTTTSSCEEEEEEEESCCC-----TTTHHHHHHHHHHH----T-CSSEEEETT-EEEESSC-TTT
T ss_pred cceeEEEeeeecccCChhhCceeEEEEecCCCCC-----cchHHHHHHHHHHH----h-CCeEEeecC-ceecccC-chh
Confidence 3578999999998 44467899999999964322 22233455666543 2 333233343 6777766 432
Q ss_pred -cceEEEEeccccccCCCCCCCCCCCCCCCCCccccccCCCCCceEEEEEEeecccCHHHHHHHHcCCCCcChHHHH---
Q 003129 141 -KLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPYRSKTFKVEISFAAKIPIQAIANALRGQESENSQEAF--- 216 (845)
Q Consensus 141 -~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~V~I~~~~~i~~~~l~~~l~g~~~~~~~~~l--- 216 (845)
..|-+|. +..++..|.+.-.=...++..+-. ..+||
T Consensus 73 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 112 (685)
T 3ho1_A 73 LVLEGTLA------------------------------RMGQTYAYRLYPKGRRPLDPKDPG----------ERSVLSAL 112 (685)
T ss_dssp SCCEEEEE------------------------------CSSCEEEEEEEEEEECCCCTTSHH----------HHHHHHHH
T ss_pred hhccchhc------------------------------cccCCcceeeeecccccCCCCChH----------HHHHHHHH
Confidence 1233221 112344576666656666653211 12233
Q ss_pred --HHHHHHHhccccccCccccccccccCCCCCcccCCCcEEEeecceeEEEEeC-CeeEEEEeccccccccCchHHHHHH
Q 003129 217 --RVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQ-GGLSLNIDVSTTMIIQPGPVVDFLI 293 (845)
Q Consensus 217 --q~Lniilr~~~~~~~~~~~g~~ff~~~~~~~~~lg~g~e~~~Gf~~Svr~~~-~gl~LniDvs~~~F~~~~~v~d~l~ 293 (845)
..|+-.|++. . +...-|.-.+-.. . .-|.|.|+.+|+...|.++. +++.|.||..+.. +++.++.++|.
T Consensus 113 ~~~~~~~~~~~~-~--~~~~~~~~~~~~~--~--~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r~-~~~~~~~~~l~ 184 (685)
T 3ho1_A 113 ARRLLQERLRRL-E--GVWVEGLAVYRRE--H--ARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRI-LCEMSLEAWLA 184 (685)
T ss_dssp HHHHHHHHHHTC-S--SSEEETTEEEEEE--E--EEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEE-EECSCHHHHHH
T ss_pred HHHHHHHHHHhh-h--ceEEccEEEEeec--C--CCCCceEEecceEEEEEECCCCcEEEEEeeheee-cChhhHHHHHH
Confidence 4566666665 2 2221222222211 1 12789999999999999997 8999999999985 89999999998
Q ss_pred HhcCCCCCCchhHHHHHHHhcCcEEEEeecCceEEEeccCcccccccceecccCCCCCCCCCccceeeeHHHHHHHhcCC
Q 003129 294 ANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNI 373 (845)
Q Consensus 294 ~~~~~~~~~~~d~~~~~~~Lkgl~V~~~~~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~itv~eYf~~~y~i 373 (845)
.... |- .+|.++|+.++|+|.+|+. ..++..|... .||++|||.++|.+
T Consensus 185 ~~~~---------------~~-~~v~~~y~~~~~~~~~~~~-~~p~~~~l~~--------------~~s~~~y~~~k~~~ 233 (685)
T 3ho1_A 185 QGHP---------------LP-KRVRNAYDRRTWELLRLGE-EDPKELPLPG--------------GLSLLDYHASKGRL 233 (685)
T ss_dssp HSCC---------------CC-SEEEESSSCCEECCCEEEC-CCTTCC--------------------CSTTTTTTTSTT
T ss_pred hCCC---------------cc-HHHhhhcccceEEEeeccc-CCchheecCC--------------CccHHHHHhhcccc
Confidence 7432 34 6899999999999999984 5555566432 59999999999887
Q ss_pred cccCCCCCcEEEc-CCCC---C-----CceecccceEEcCCccccccCCHHHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 003129 374 DLRYSGDLPCINV-GKPK---R-----PTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQKPQERMSVLSNALKLSKY 444 (845)
Q Consensus 374 ~L~~~p~lP~v~v-g~~~---~-----~~ylP~Elc~i~~~Qr~~~~ls~~q~~~li~~s~~~P~eR~~~i~~~~~~~~~ 444 (845)
+. -++|.|+. .+.+ + ..||.|||| +.+. ++.+++ .+++.+|++|++.+.++++.+
T Consensus 234 --~~-~~~~~vv~~~~~~~~~~~i~~~~~~l~p~l~-m~~l-------~~~~~~---~~trlsP~~R~~~l~~~~~~i-- 297 (685)
T 3ho1_A 234 --QG-REGGRVAWVADPKDPRKPIPHLTGLLVPVLT-LEDL-------HEEEGS---LALSLPWEERRRRTREIASWI-- 297 (685)
T ss_dssp --TT-SCCCSEEEECSCC---CCEEEETTSEEEECC-TTTT-------SSCSSC---CCCCCCHHHHHHHHHHHHHHH--
T ss_pred --cc-cCCceEEEEeccccCCCcceeeeeeechHhH-HHHH-------hhhhhh---ccccCCHHHHHHHHHHHHHHH--
Confidence 76 78887754 3322 2 358999999 7754 433332 578999999999999997764
Q ss_pred CCCccccceeeEecCCceeeeeEEcCCCeeecCCCcccCCCCCccccCCceeecCCccceEEEEEeCCc-ccHHHHHHHH
Q 003129 445 DNEPMLRSCGISISTNFAQVEGRVLPAPRLKFGNGEDFSPRNGRWNFNNKKLVQPTKIERWAVVNFSAR-CDIRSLVRDL 523 (845)
Q Consensus 445 ~~~~~L~~~Gi~I~~~~~~v~grvL~~P~i~~g~~~~~~~~~g~W~~~~~~f~~p~~i~~Wavv~~~~~-~~~~~f~~~L 523 (845)
++.|||+ +++|++|+||+||||+| +|+.. + .+.|++.+.+|+.++.. .|++++++.. ..++.|++.|
T Consensus 298 -----~~~~Gl~-~~~~i~v~gRvLppp~I-~g~~~-~---~~~~d~~~~~~~~~~~~-~~ail~l~~~~~~~~~f~~~L 365 (685)
T 3ho1_A 298 -----GRRLGLG-TPEAVRAQAYRLSIPKL-MGRRA-V---SKPADALRVGFYRAQET-ALALLRLDGAQGWPEFLRRAL 365 (685)
T ss_dssp -----HHTTCSC-CCEEEEEEEEECCCCCE-ESSSB-C---SSGGGHHHHCCSSCCCE-EEEEEECSSCCSCCHHHHHHH
T ss_pred -----HHhcCCC-CCCcceEEEEEcCHHHh-cCCCC-c---CCchhhccCcceeccCc-eEEEEeccCchHHHHHHHHHH
Confidence 6789998 99999999999999999 87542 2 34566666678887765 7999998764 3688999999
Q ss_pred HHHhhhcCCccCCCccccccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceee
Q 003129 524 IKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQ 603 (845)
Q Consensus 524 ~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~ve~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQ 603 (845)
.+.|+.+||.|+.|... +.++. .......+++..+ .++|+||||+|+ ++.+.|+.||+.| .+.||+||
T Consensus 366 ~~va~~~G~~i~~~~~~--~~~~d-----~~~~~~~l~~~~~---~~~qlvvvIlp~-~~~~~y~~IKk~~-~~~GIpTQ 433 (685)
T 3ho1_A 366 LRAFGASGASLRLHTLH--AHPSQ-----GLAFREALRKAKE---EGVQAVLVLTPP-MAWEDRNRLKALL-LREGLPSQ 433 (685)
T ss_dssp HHHHHSSSSCEEEEECC--CCGGG-----THHHHHHHHHHHH---TTCCEEEEEESC-CCHHHHHHHHHHH-HHTTCCEE
T ss_pred HHHHHhCCcEeccceee--cCCCc-----hHHHHHHHHHhhh---cCCCEEEEEECC-CCccHHHHHHHHH-hcCCCccE
Confidence 99999999999864321 11110 1123334454443 468999999999 7788999999876 79999999
Q ss_pred Eeeccc---cChhHHHHHHHHHHhcCCCceeeccccCCCCCCcccCCCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-C
Q 003129 604 CMAPMR---VNDQYLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-P 679 (845)
Q Consensus 604 ci~~~k---~~~q~~~Ni~lKINaKLGG~n~~l~~~~~~~~p~~~~~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~ 679 (845)
||. ++ .+.++++||+|||||||||+||.|+. |. .+|||||+||+|++. .++++++++.+. .
T Consensus 434 cV~-~tl~k~~~~ia~NIaLkINaKLGG~pW~L~~------P~---~~tmiIGiDVsH~~~-----~~~~~~aav~~~dg 498 (685)
T 3ho1_A 434 ILN-VPLREEERHRWENALLGLLAKAGLQVVALSG------AY---PAELAVGFDAGGRES-----FRFGGAACAVGGDG 498 (685)
T ss_dssp EEE-SSCCTTCHHHHHHHHHHHHHHHTCCCCEECS------CC---SCSEEEEEEEEETTE-----EEEEEEEEEECC--
T ss_pred EEe-cccccccHhHHHHHHHHHHHHhCCeeEEecC------CC---CCeEEEEEEEEcCCC-----CccceEEEEEECCC
Confidence 999 33 35678999999999999999999953 43 789999999999862 244444444332 1
Q ss_pred cccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhcCCCCCcEEEEEeecC-ChhHHHHHHHHHHHHHHH
Q 003129 680 LISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPEQIIIFRDGV-SESQFNQVLNVELNQIIE 758 (845)
Q Consensus 680 ~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~~IIiyRDGV-SEgqf~~Vl~~El~~I~~ 758 (845)
...+|. .++.|.+.++.+++| ..|+.++|..|++.+ +.+|+||||||||| ||+||. +|++
T Consensus 499 ~~~~~~-~~~~Q~~e~l~~~~L---------~~~l~eaL~~Y~k~n-g~lP~RIIIyRDGV~se~E~~--------~I~e 559 (685)
T 3ho1_A 499 GHLLWT-LPEAQAGERIPQEVV---------WDLLEETLWAFRRKA-GRLPSRVLLLRNGRVPQDEFA--------LALE 559 (685)
T ss_dssp CCCEEE-CCCCCCSCCCHHHHH---------HHHHHHHHHHHHHHH-SSCCSEEEEEECSSSCSGGGH--------HHHH
T ss_pred CEEEeE-EEEccCCcEecHHHH---------HHHHHHHHHHHHHHh-CCCCcEEEEEeCCCCCHHHHH--------HHHH
Confidence 344443 345665443334555 469999999998875 69999999999999 888664 5678
Q ss_pred HHHHccCCCCCeEEEEEEeeccccccccCCCCCCCCCCceeeCcccCCccccccccchhHHHhhHHHhhcc-cccccccc
Q 003129 759 ACKFLDEKWSPKFAVIVAQKNHHTKFFQSGSPDNVPPGEPFHNFVQHKSITALDITFENFLFMQELLLTTK-SVIQETMT 837 (845)
Q Consensus 759 A~~~~~~~~~Pkit~Ivv~KrhhtRff~~~~~~N~ppGTVVD~~It~P~~~~~~~~~dFfl~~~~~~l~s~-~~~qGta~ 837 (845)
||+++ .+++|||||+||||+|||+.+ .+|.+||+|+. . +||| ||.+| ++.|||++
T Consensus 560 Al~~~----~~~~t~IvVqKRh~tRfF~~n--~pp~~Gt~v~~------e------~d~f------lL~s~gsv~qGT~r 615 (685)
T 3ho1_A 560 ALARE----GIAYDLVSVRKSGGGRVYPVQ--GRLADGLYVPL------E------DKTF------LLLTVHRDFRGTPR 615 (685)
T ss_dssp HHHHT----TCEEEEEEEESSCCCCEEESS--SCCCSSEEEEC------S------TTEE------EEECCCCCSSSCCC
T ss_pred HHHhc----CCCEEEEEEEecCCceEecCC--CCCCCeEEEeC------C------CCEE------EEEecCCCCccCCc
Confidence 88875 378999999999999999975 46667776642 2 2444 35554 68999999
Q ss_pred ccccc
Q 003129 838 STFVP 842 (845)
Q Consensus 838 pt~Y~ 842 (845)
||||+
T Consensus 616 Pthy~ 620 (685)
T 3ho1_A 616 PLKLV 620 (685)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 99997
No 7
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=3.9e-57 Score=503.90 Aligned_cols=265 Identities=29% Similarity=0.458 Sum_probs=221.2
Q ss_pred cCCceeec-CCccceEEEEEeCCc---ccHHHHHHHHHHHhhhcCCccCCCccccccCccccCCCchHHHHHHH--HHHH
Q 003129 491 FNNKKLVQ-PTKIERWAVVNFSAR---CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMF--DEIQ 564 (845)
Q Consensus 491 ~~~~~f~~-p~~i~~Wavv~~~~~---~~~~~f~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~ve~~~--~~l~ 564 (845)
+++++|++ ++++++|+++++..+ .+++.|++.|.+.|+.+||.++.|....... .+.+. +..| +.+.
T Consensus 2 ~~~~~f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~---~~~~~----~~~~~~~~~~ 74 (388)
T 2yha_A 2 AMAVKVARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSM---SVPGS----EKEFFAKVKE 74 (388)
T ss_dssp ---CCCSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEE---ECCSS----HHHHHHHHHH
T ss_pred CCCCEeccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceec---CCCch----HHHhHHHHhh
Confidence 56789999 689999999999643 3799999999999999999998875321110 01111 2333 3332
Q ss_pred hhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeeccc---cChh--HHHHHHHHHHhcCCCceeeccccCCC
Q 003129 565 SKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---VNDQ--YLTNVLLKINAKLGGLNSLLAVEHSP 639 (845)
Q Consensus 565 ~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k---~~~q--~~~Ni~lKINaKLGG~n~~l~~~~~~ 639 (845)
.. .+++|+|||||+ ++.++|+.||++||+++||+||||..++ .++| |++||+||||+||||+||.|..
T Consensus 75 ~~--~~~~lvl~ilp~-~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~---- 147 (388)
T 2yha_A 75 LM--SSHQFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT---- 147 (388)
T ss_dssp HH--HTCSEEEEEESS-SCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCS----
T ss_pred cc--CCCeEEEEEECC-CChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceeccc----
Confidence 11 368999999998 7788999999999999999999999854 5788 9999999999999999999964
Q ss_pred CCCcccCCCEEEEEEeeecCC---CC--CCCCCeEEEEEEecCCCcccceeeEEEecc-CCcccccccccccCCcchHHH
Q 003129 640 SIPIVSKVPTIILGMDVSHGS---PG--HSDIPSIAAVVSSRHWPLISRYRAAVRTQS-PKVEMIDSLFKKVSDTEDEGI 713 (845)
Q Consensus 640 ~~p~~~~~~tMIiG~DVsH~~---~~--~~~~pSiaavVaS~d~~~~~~y~~~~~~Q~-~~~E~i~~l~~~~~~~~~~~~ 713 (845)
.+|++.+.+|||||+||+||+ || ....|||||||||+|. ..++|.+.+++|. +++|+|++|. +|
T Consensus 148 ~~~~~~~~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d~-~~~~y~~~~~~Q~~~~~E~i~~l~---------~~ 217 (388)
T 2yha_A 148 PIPLLAKGKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTIDQ-HLGQWPAMVWNNPHGQESMTEQFT---------DK 217 (388)
T ss_dssp CCHHHHTSCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCST-TCCCCCEEEEEETTTHHHHHHHHH---------HH
T ss_pred cccccCCCCEEEEEEEEecccccCCCCcCCCCCEEEEEEEEcCC-CCCEEEEEEEEcCCCcccHHHHHH---------HH
Confidence 346666789999999999998 77 3457999999999995 8999999999999 9999999864 69
Q ss_pred HHHHHHHHHH--hcCCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCC-CCeEEEEEEeec
Q 003129 714 IRELLLDFYT--SSGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKW-SPKFAVIVAQKN 779 (845)
Q Consensus 714 i~e~L~~f~~--~~~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~-~Pkit~Ivv~Kr 779 (845)
++++|+.|++ .+++.+|+||||||||||||||.+|+++|+++|++||.+++.+| +|+||||||+||
T Consensus 218 ~~~~L~~~~~~~~~~~~~P~rIiiyRDGVseGQf~~V~~~El~~i~~a~~~~~~~~~~P~it~Ivv~Kr 286 (388)
T 2yha_A 218 FKTRLELWRSNPANNRSLPENILIFRDGVSEGQFQMVIKDELPLVRAACKLVYPAGKLPRITLIVSVKG 286 (388)
T ss_dssp HHHHHHHHHHSGGGTTCCCSEEEEEEESCCGGGHHHHHHHTHHHHHHHHHHHSCTTCCCEEEEEEEC--
T ss_pred HHHHHHHHHHhhhhcCCCCceEEEEecCcChhHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEEEeccc
Confidence 9999999987 35679999999999999999999999999999999999998887 899999999999
No 8
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=100.00 E-value=3.3e-40 Score=372.43 Aligned_cols=309 Identities=16% Similarity=0.119 Sum_probs=199.7
Q ss_pred EcCCCeeecC--CCcccC------CCCCccccCCceeecCCcc--ceEEEEEeCCcccHHHHHHHHHHHhh---hcCCcc
Q 003129 468 VLPAPRLKFG--NGEDFS------PRNGRWNFNNKKLVQPTKI--ERWAVVNFSARCDIRSLVRDLIKCGE---MKGILI 534 (845)
Q Consensus 468 vL~~P~i~~g--~~~~~~------~~~g~W~~~~~~f~~p~~i--~~Wavv~~~~~~~~~~f~~~L~~~~~---~~G~~i 534 (845)
.|..|.+.|| +|..++ +..| +.+...+..... .+|+|++..+..+ |++.|.+... ..++.+
T Consensus 5 ~~~ep~~~~~~~~~~~~~~~~~~~~~~g---l~~~gpy~~~~~~~~~w~vI~~~~~~~---~l~~l~~~~~~~~g~~f~~ 78 (427)
T 2w42_A 5 KIVENGLTYRIGNGASVPISNTGELIKG---LRNYGPYEVPSLKYNQIALIHNNQFSS---LINQLKSQISSKIDEVWHI 78 (427)
T ss_dssp ------CEEECGGGCEEESSCHHHHHHH---HHHHCCSBCCCCSSSEEEEEESCTTCH---HHHHHHHHHHHHHHHTTCC
T ss_pred ccCCCcceeeccCCCcccccccCCHHHH---HHhcCCCccCCCCCCEEEEEECcccHH---HHHHHHHhhhhcCCCceee
Confidence 3566778887 555321 1111 222233333333 6899997654333 6666655432 245555
Q ss_pred CCCccccccCccccCCCchHHHHHHHHHHHhhCCCCCeEEEEEc--------CCCCCCcchHHHHHHhhcccCceeeEee
Q 003129 535 DQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPGAPQFLLCLL--------PERKNSDLYGPWKRKNLADFGIVTQCMA 606 (845)
Q Consensus 535 ~~P~~v~~~~~~~~~~~~~~~ve~~~~~l~~~~~~~~~~vl~Il--------p~~~~~~~Y~~iK~~~~~~~gI~TQci~ 606 (845)
..+..- ...+. +.+ .+.+++ +++++|||+ |+ ++.+.|. +|+ ++.+.||+||||.
T Consensus 79 ~~~~~~---~~~y~-----~~i---~~~l~~----~~~lvlvilp~~~~~~~~~-~~~~~y~-~K~-~~~~~gvptQ~I~ 140 (427)
T 2w42_A 79 HNINIS---EFIYD-----SPH---FDSIKS----QVDNAIDTGVDGIMLVLPE-YNTPLYY-KLK-SYLINSIPSQFMR 140 (427)
T ss_dssp CSCEEE---EEECS-----SSS---HHHHHH----HHHHHHHHCCSEEEEEESS-CCHHHHH-HHH-HHHHTTSCEEEEE
T ss_pred cCCcCC---hHHHH-----HHH---HHHhcC----CCCEEEEEEEccccccCCC-CCcchHH-HHH-HHhCCCcCcEEEE
Confidence 444311 00111 111 223332 468999999 55 4444555 775 6689999999999
Q ss_pred ccccC---hh-HHHHHHHHHHhcCCCceeeccccCCCCCCcccCCCEEEEEEeeecCCCCCCCCCeEEEEEEecCCCccc
Q 003129 607 PMRVN---DQ-YLTNVLLKINAKLGGLNSLLAVEHSPSIPIVSKVPTIILGMDVSHGSPGHSDIPSIAAVVSSRHWPLIS 682 (845)
Q Consensus 607 ~~k~~---~q-~~~Ni~lKINaKLGG~n~~l~~~~~~~~p~~~~~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~~~~~ 682 (845)
.+++. .+ +++||++||||||||+||.|+.. .|. .+|||||+||+|++++ +++|++.+.|. +..
T Consensus 141 ~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~~~miiGidv~h~~~~-----~v~g~a~v~~~-~g~ 207 (427)
T 2w42_A 141 YDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---GSDIIIGTGATRIDNV-----NLFCFAMVFKK-DGT 207 (427)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---SCSEEEEEEEEESSSS-----EEEEEEEEECT-TSC
T ss_pred hhhcccccchhHHHHHHHHHHHHhCCcceecccC----CCC---CCeEEEEEEEEEcCCC-----cEEEEEEEEcC-CCC
Confidence 87653 33 48899999999999999999631 122 5799999999999764 56665433332 223
Q ss_pred ceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhcCCCCCc--EEEEEeecCChhHHHHHHHHHHHHHHHHH
Q 003129 683 RYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSSGKRKPE--QIIIFRDGVSESQFNQVLNVELNQIIEAC 760 (845)
Q Consensus 683 ~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~~~~~P~--~IIiyRDGVSEgqf~~Vl~~El~~I~~A~ 760 (845)
.+...+..|.+++|++++|. .+++++|..|+++.++.+|+ ||||| |||.+|+++|+++|++||
T Consensus 208 ~~~~~~~~~~~~~E~~~~l~---------~~l~~aL~~y~~~~~~~~P~~~rIii~------gq~~~v~~~Ei~~i~~a~ 272 (427)
T 2w42_A 208 MLWNEISPIVTSSEYLTYLK---------STIKKVVYGFKKSNPDWDVEKLTLHVS------GKRPKMKDGETKILKETV 272 (427)
T ss_dssp EEEEEECCCEEGGGHHHHHH---------HHHHHHHHHHHHHCTTCCCSEEEEEEE------SSCCSCHHHHHHHHHHHH
T ss_pred EEEEEEEecCChhHHHHHHH---------HHHHHHHHHHHHHhcCCCCCceEEEEE------eecccccHHHHHHHHHHH
Confidence 34444555667789988864 59999999997723568888 66887 899999999999999999
Q ss_pred HHccC----CCCCeEEEEEEeeccc-cccccCCCCCCCCCCceeeCcccCCccccccccchhHHHhhHHHhhccc-----
Q 003129 761 KFLDE----KWSPKFAVIVAQKNHH-TKFFQSGSPDNVPPGEPFHNFVQHKSITALDITFENFLFMQELLLTTKS----- 830 (845)
Q Consensus 761 ~~~~~----~~~Pkit~Ivv~Krhh-tRff~~~~~~N~ppGTVVD~~It~P~~~~~~~~~dFfl~~~~~~l~s~~----- 830 (845)
++++. +|+|++|||+|+|||| +|||..+..+||+||||||.+ .+.+ ++|| +++|.
T Consensus 273 ~~~~~~~~~~~~~~l~~IvV~Kr~~~~r~f~~~~~~nP~~GTvVd~~--~~~~------l~~~-------~g~q~~~~~~ 337 (427)
T 2w42_A 273 EELKKQEMVSRDVKYAILHLNETHPFWVMGDPNNRFHPYEGTKVKLS--SKRY------LLTL-------LQPYLKRNGL 337 (427)
T ss_dssp HHHHHTTSSCTTCEEEEEEEEECCCEEEEC--------CCSEEEESS--SSEE------EEEE-------EC--------
T ss_pred HHhccccccCCCCCEEEEEEEccccceeeecCCCCCCCCCceEEEcC--CCeE------EEEE-------Eeeecccccc
Confidence 99865 7899999999999999 899976555799999999983 3332 4555 66665
Q ss_pred -cccccccccccccc
Q 003129 831 -VIQETMTSTFVPML 844 (845)
Q Consensus 831 -~~qGta~pt~Y~vl 844 (845)
+.+|+. ||||+|+
T Consensus 338 ~~~~~~~-Pt~y~vi 351 (427)
T 2w42_A 338 EMVTPIK-PLSVEIV 351 (427)
T ss_dssp -CEEEEE-EEEEEEE
T ss_pred ccccCCC-CEEEEEE
Confidence 555343 9999997
No 9
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=99.93 E-value=1.1e-26 Score=222.92 Aligned_cols=130 Identities=20% Similarity=0.389 Sum_probs=91.9
Q ss_pred ccCchHHHHHHHhcCC---CCCCchh--HHHHHHHhcCcEEEEee------cCceEEEeccCcccccccceecccCCCCC
Q 003129 283 IQPGPVVDFLIANQNV---RDPFSID--WAKAKRTLKNLRIKTIT------SNQEYKITGLSEKLCKEQMFSLKQKNVKD 351 (845)
Q Consensus 283 ~~~~~v~d~l~~~~~~---~~~~~~d--~~~~~~~Lkgl~V~~~~------~~r~~kI~gi~~~~~~~~~F~~~~~~~~~ 351 (845)
++++||+|||.+..+. .+...+| +.+++++|+|++|.++| ++|+|+|.||++.++++++|..++
T Consensus 2 ~~~~~vidfl~~~~~~~~~~~~~~~~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~g----- 76 (143)
T 1vyn_A 2 AMAMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDG----- 76 (143)
T ss_dssp --CEEHHHHHHHHTTSSCCSSSSCHHHHHHHSHHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESSS-----
T ss_pred CCcccHHHHHHHHhccccccccCcchHHHHHHHHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEEEcCC-----
Confidence 5789999999987632 1222334 45689999999999999 678999999999999999997632
Q ss_pred CCCCccceeeeHHHHHHHhcCCcccCCCCCcEEEcCCCCCCceecccceEEcCCccccccCCHHHHHHHHHHhcC
Q 003129 352 DDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALTNLQRASLVEKSRQ 426 (845)
Q Consensus 352 ~~~~~~~~~itv~eYf~~~y~i~L~~~p~lP~v~vg~~~~~~ylP~Elc~i~~~Qr~~~~ls~~q~~~li~~s~~ 426 (845)
.+|||+|||+++ |++|+| |+||||++|++.+++|||||||.|++||+|+++|++.|+++||++|++
T Consensus 77 -------~~isv~~Yf~~~-~~~l~~-p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~ 142 (143)
T 1vyn_A 77 -------KKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAAT 142 (143)
T ss_dssp -------CEEEHHHHHHHT-TCCCSS-TTSEEEEEECSSSEEEEEGGGEEECC----------------------
T ss_pred -------CEEEHHHHHHHc-CCCCCC-CCCCeEEecCCCCCeEeccEeEEccCCccccccCCHHHHHHHHHHHhc
Confidence 489999999988 999999 999999999988999999999999999999999999999999999886
No 10
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.92 E-value=1.8e-25 Score=213.78 Aligned_cols=132 Identities=34% Similarity=0.554 Sum_probs=112.0
Q ss_pred CceeecCCccceEEEEEeCCc---ccHHHHHHHHHHHhhhcCCccCCCccccccCccccCCCchHHHHHHHHHHHhhCCC
Q 003129 493 NKKLVQPTKIERWAVVNFSAR---CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKLPG 569 (845)
Q Consensus 493 ~~~f~~p~~i~~Wavv~~~~~---~~~~~f~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~ve~~~~~l~~~~~~ 569 (845)
+++|++|+++++|++++|+++ .++++|++.|.+.|+.+||.+++|..+.... ...++++.+++++.+.+ .
T Consensus 2 ~kkf~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~------~~~~~~e~~l~~~~~~~-~ 74 (139)
T 4g0o_A 2 DKKMVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFIS------CPPEHIEEALLDIHKRA-P 74 (139)
T ss_dssp CEEEEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCEE------CCGGGHHHHHHHHHHHC-T
T ss_pred CCeEccCcccCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeeec------CCchhHHHHHHHHHHhc-C
Confidence 579999999999999999643 3799999999999999999998775331110 11467788899988876 4
Q ss_pred CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeecc---ccChhHHHHHHHHHHhcCCCceeec
Q 003129 570 APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLL 633 (845)
Q Consensus 570 ~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~---k~~~q~~~Ni~lKINaKLGG~n~~l 633 (845)
+++|+|||||+ ++.+ |+.||++||+++||+||||..+ +.++||++||+||||+||||+||.|
T Consensus 75 ~~qlv~~ilp~-~~~~-Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 75 GLQLLIVILPD-VTGS-YGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp TCSEEEEECCS-SSSC-HHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCcEEEEEECC-CCCc-HHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 68999999999 6667 9999999999999999999985 4679999999999999999999975
No 11
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.91 E-value=9.5e-25 Score=210.87 Aligned_cols=138 Identities=30% Similarity=0.518 Sum_probs=108.7
Q ss_pred CceeecCCccceEEEEEeCCcc---cHHHHHHHHHHHhhhcCCccCCCccccccCccccCCCchHHHHHHHHHHHhhC--
Q 003129 493 NKKLVQPTKIERWAVVNFSARC---DIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSKL-- 567 (845)
Q Consensus 493 ~~~f~~p~~i~~Wavv~~~~~~---~~~~f~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~ve~~~~~l~~~~-- 567 (845)
+++|++|+++++|++++|++.. .+++|++.|.+.|+.+||.++.|..+.... .+....+..++..++++.+.+
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 79 (147)
T 4g0x_A 2 NKKMINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVS--ARPEQVEKVLKTRYHDATSKLSQ 79 (147)
T ss_dssp CCCEEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEE--CCGGGHHHHHHHHHHHHHHTSST
T ss_pred CCEEecCCccCeEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccC--CChHHHHHHHHHHHHHHHhhccc
Confidence 5789999999999999998654 588899999999999999998876542210 000011223334444444333
Q ss_pred CCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeeccc---cChhHHHHHHHHHHhcCCCceeec
Q 003129 568 PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMR---VNDQYLTNVLLKINAKLGGLNSLL 633 (845)
Q Consensus 568 ~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k---~~~q~~~Ni~lKINaKLGG~n~~l 633 (845)
..+++|+|||||+ +++++|+.||++||+++||+||||..++ .++||++||+||||+||||+||.|
T Consensus 80 ~~~~~lv~~il~~-~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 80 GKEIDLLIVILPD-NNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp TCCCCEEEEEECS-SCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CCCCeEEEEEeCC-CCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 2578999999999 7889999999999999999999999854 579999999999999999999865
No 12
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.91 E-value=1.9e-24 Score=206.47 Aligned_cols=130 Identities=29% Similarity=0.473 Sum_probs=107.7
Q ss_pred CCceeecCCccceEEEEEeCCc-----ccHHHHHHHHHHHhhhcCCccCCCccccccCccccCCCchHHHHHHHHHHHhh
Q 003129 492 NNKKLVQPTKIERWAVVNFSAR-----CDIRSLVRDLIKCGEMKGILIDQPFDVFEESPQFRRSSPVVRVEKMFDEIQSK 566 (845)
Q Consensus 492 ~~~~f~~p~~i~~Wavv~~~~~-----~~~~~f~~~L~~~~~~~G~~i~~P~~v~~~~~~~~~~~~~~~ve~~~~~l~~~ 566 (845)
++++|++|+++++|++++|+.+ ..+++|++.|.+.|+.+||.++.|..+... ....++++.+|+++++.
T Consensus 1 ~~kkf~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~------~~~~~~v~~~~~~l~~~ 74 (138)
T 3luc_A 1 SNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKY------AQGADSVEPMFRHLKNT 74 (138)
T ss_dssp --CCCCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEE------CCSGGGHHHHHHHHHHH
T ss_pred CcCeecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeec------CCcHHHHHHHHHHHHhc
Confidence 3678999999999999998742 258999999999999999999864432211 11246889999999886
Q ss_pred CCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeecc---ccChhHHHHHHHHHHhcCCCce
Q 003129 567 LPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLN 630 (845)
Q Consensus 567 ~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~---k~~~q~~~Ni~lKINaKLGG~n 630 (845)
. .+++|+|||||+ ++++|+.||++||+++||+||||..+ +.++||++||+||||+||||+|
T Consensus 75 ~-~~~qlv~~ilp~--~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 75 Y-AGLQLVVVILPG--KTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp C-TTCCEEEEEECS--SCHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred C-CCCcEEEEEECC--CChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 5 368999999996 47899999999999999999999975 4579999999999999999987
No 13
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.91 E-value=1.4e-24 Score=210.52 Aligned_cols=139 Identities=29% Similarity=0.444 Sum_probs=98.6
Q ss_pred CceeecCCccceEEEEEeCCc----ccHHHHHHHHHHHhhhcCCccCCCccccccCc-cccCC-CchHHHHHHHHHHHhh
Q 003129 493 NKKLVQPTKIERWAVVNFSAR----CDIRSLVRDLIKCGEMKGILIDQPFDVFEESP-QFRRS-SPVVRVEKMFDEIQSK 566 (845)
Q Consensus 493 ~~~f~~p~~i~~Wavv~~~~~----~~~~~f~~~L~~~~~~~G~~i~~P~~v~~~~~-~~~~~-~~~~~ve~~~~~l~~~ 566 (845)
+++|++|+++++|++++|++. .++++|++.|.+.|+.+||.+++|..+..... ...+. ..+..++.+++++++.
T Consensus 2 ~kkf~~~~~l~~Wavv~~~~~~~~~~~~~~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (150)
T 4g0m_A 2 KKGVTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASRK 81 (150)
T ss_dssp -------CEECSEEEEETTTTTSTTCCCTTHHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCeECCCcccCeEEEEEecCCcchhHHHHHHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHHHHHh
Confidence 578999999999999999764 26889999999999999999998875432111 01111 0123456666777766
Q ss_pred CCC-CCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeecc---ccChhHHHHHHHHHHhcCCCceeec
Q 003129 567 LPG-APQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPM---RVNDQYLTNVLLKINAKLGGLNSLL 633 (845)
Q Consensus 567 ~~~-~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~---k~~~q~~~Ni~lKINaKLGG~n~~l 633 (845)
+++ .|+|+|||||+ ++ +.|+.||++||+++||+||||..+ +.++||++||+||||+||||+||.|
T Consensus 82 ~~~~~pqlv~~ilp~-~~-~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 82 HGGARPTLVLCAMSR-KD-DGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp TTTCCCCEEEEEESS-CC-THHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred cCCCCCcEEEEEECC-CC-ccHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 543 67999999999 55 459999999999999999999975 4689999999999999999999865
No 14
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.90 E-value=1.7e-24 Score=209.33 Aligned_cols=135 Identities=19% Similarity=0.283 Sum_probs=93.2
Q ss_pred cCchHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEeecCceEEEeccCcccccccceecccCCCCCCCCCccceeeeH
Q 003129 284 QPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITV 363 (845)
Q Consensus 284 ~~~~v~d~l~~~~~~~~~~~~d~~~~~~~Lkgl~V~~~~~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~itv 363 (845)
+++||+|+|.+..+. +...-.+.++++.|+|+.|.+.|+|+.|+|.||++.++++++|+.+++ .++||
T Consensus 1 r~~tvld~~~~~~~~-~~~~~~~~~~~~~l~g~~V~t~y~nr~yrI~~i~~~~~p~~~F~~~~g-----------~~~T~ 68 (150)
T 2xfm_A 1 RSETVLDFMFNLYQQ-TEEHKFQEQVSKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADG-----------SEVSF 68 (150)
T ss_dssp CCCBHHHHHHHHHHH-SCHHHHHHHHHHHHTTCEEEETTTTEEEECCEEETTCCTTCCCCSSSS-----------CCCCH
T ss_pred CCccHHHHHHHHHcc-ccchHHHHHHHHHhCCcEEEEeeCCceEEeeecCCCCCccCeeecCCC-----------ceeeH
Confidence 468999999875431 111124668999999999999999999999999999999999976431 47999
Q ss_pred HHHHHHhcCCcccCCCCCcEEEcCCCC---------CCceecccceEEcCCccccccCCHHHHH------HHHHHhcCCh
Q 003129 364 YDYFVNNRNIDLRYSGDLPCINVGKPK---------RPTYIPLELCELVSLQRYTKALTNLQRA------SLVEKSRQKP 428 (845)
Q Consensus 364 ~eYf~~~y~i~L~~~p~lP~v~vg~~~---------~~~ylP~Elc~i~~~Qr~~~~ls~~q~~------~li~~s~~~P 428 (845)
+|||+++||++|+| |+||||++|..+ +++|||||||.|++ |++.|++ +|+++++++|
T Consensus 69 ~eYf~~~Y~i~i~~-~~qPlL~~~~~~~~~~~~~~~~~~~LppELC~i~~-------L~d~~rs~~~~mk~l~~~t~~~P 140 (150)
T 2xfm_A 69 LEYYRKQYNQEITD-LKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTG-------LTDKMRNDFNVMKDLAVHTRLTP 140 (150)
T ss_dssp HHHHHTTCCCCCCC-SSSCEEEECSSCTTCCSSCSSCCEEECGGGEEECS-------TTC--------------------
T ss_pred HHHHHHHcCCccCC-CCCCeEEecccccccccccccceEEecHHHhccCC-------CCHHHHhhHHHHHHHHHHHccCH
Confidence 99999999999999 999999997642 67999999999995 6888877 4899999999
Q ss_pred HHHHHHHHHH
Q 003129 429 QERMSVLSNA 438 (845)
Q Consensus 429 ~eR~~~i~~~ 438 (845)
++|++.|.++
T Consensus 141 ~~R~~~i~~f 150 (150)
T 2xfm_A 141 EQRQREVGRL 150 (150)
T ss_dssp ----------
T ss_pred HHHHHHHhcC
Confidence 9999987653
No 15
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=99.88 E-value=4.9e-23 Score=191.78 Aligned_cols=113 Identities=20% Similarity=0.414 Sum_probs=92.2
Q ss_pred cCchHHHHHHHhcCCCC---CC--chhHHHHHHHhcCcEEEEee------cCceEEEeccCcccccccceecccCCCCCC
Q 003129 284 QPGPVVDFLIANQNVRD---PF--SIDWAKAKRTLKNLRIKTIT------SNQEYKITGLSEKLCKEQMFSLKQKNVKDD 352 (845)
Q Consensus 284 ~~~~v~d~l~~~~~~~~---~~--~~d~~~~~~~Lkgl~V~~~~------~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~ 352 (845)
+++||+|||.+.....+ .. +.++++++++|+|++|.++| ++|.|+|.||++.+|++++|.+++
T Consensus 1 ~~~~vief~~e~~~~~~~~~~~~l~~~r~~~~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~~g------ 74 (124)
T 3mj0_A 1 SSMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHDG------ 74 (124)
T ss_dssp CEEEHHHHHHHHTCSSCCCTTCCGGGSHHHHHHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEESSS------
T ss_pred CCccHHHHHHHHhhhcccccccCCHHHHHHHHHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEeeCC------
Confidence 46899999999643211 11 23578999999999999998 468999999999999999998641
Q ss_pred CCCccceeeeHHHHHHHhcCCcccCCCCCcEEEcCCCCCCceecccceEEcCCccccc
Q 003129 353 DGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTK 410 (845)
Q Consensus 353 ~~~~~~~~itv~eYf~~~y~i~L~~~p~lP~v~vg~~~~~~ylP~Elc~i~~~Qr~~~ 410 (845)
.+|||+|||+++ |++|+| |+||||++|+..+++|||||||.|++||++++
T Consensus 75 ------~~isV~~Yf~~~-~~~l~~-p~lP~l~~g~~~~~~ylP~Elc~i~~gQ~~~~ 124 (124)
T 3mj0_A 75 ------KKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNR 124 (124)
T ss_dssp ------SEEEHHHHHHTT-TCCCSC-SSSEEEECCBTTBCCEECGGGEEEEC------
T ss_pred ------cEEEHHHHHHHc-CCcccC-CCCCeEeecCCCCceEecceeEEECCCCccCC
Confidence 489999999997 999999 99999999998899999999999999999864
No 16
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=99.88 E-value=1.9e-23 Score=200.02 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=88.7
Q ss_pred cCchHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEeecCceEEEeccCcccccccceecccCCCCCCCCCccceeeeH
Q 003129 284 QPGPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITV 363 (845)
Q Consensus 284 ~~~~v~d~l~~~~~~~~~~~~d~~~~~~~Lkgl~V~~~~~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~itv 363 (845)
+.+||+|+|.+.... + ..-.+.++++.|+|+.|.|.|+|+.|+|.||+|..++..+|..+++ .++||
T Consensus 1 r~~tvld~m~~~~~~-~-~~~~~~~~~k~l~g~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg-----------~~iT~ 67 (148)
T 3qir_A 1 RNDCVLDVMHAIYQQ-N-KEHFQDECTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDG-----------KEITF 67 (148)
T ss_dssp -CCCHHHHHHHHHHH-H-HHHHHHHHHHHHTTCEEEETTTCCEEECCEEETTCCTTSEEECTTS-----------CEEEH
T ss_pred CcchHHHHHHHHHhh-C-cHHHHHHHHHHcCCCEEEEccCCcEEEEeeecCCCCcCccccCCCC-----------CcccH
Confidence 357899999874321 1 1224678999999999999999999999999998888889986532 48999
Q ss_pred HHHHHHhcCCcccCCCCCcEEEcCCCC----------CCceecccceEEcCCccccccCCHHHHH------HHHHHhcCC
Q 003129 364 YDYFVNNRNIDLRYSGDLPCINVGKPK----------RPTYIPLELCELVSLQRYTKALTNLQRA------SLVEKSRQK 427 (845)
Q Consensus 364 ~eYf~~~y~i~L~~~p~lP~v~vg~~~----------~~~ylP~Elc~i~~~Qr~~~~ls~~q~~------~li~~s~~~ 427 (845)
+|||+++|||+|+| ++||||+++.++ +++|||||||.++| |++.|++ +|++++++.
T Consensus 68 ~eYf~~kY~i~I~~-~~qPlL~~~~k~~~~~~~~~~~~~~yL~pELC~ltg-------Ltd~~r~d~~~mk~l~~~tr~~ 139 (148)
T 3qir_A 68 LEYYSKNYGITVKE-EDQPLLIHRPSERQDNHGMLLKGEILLLPELSFMTG-------IPEKMKKDFRAMKDLAQQINLS 139 (148)
T ss_dssp HHHHHHHHCCCCSC-TTCCEEEECCTTCCCC---CCSCCEEECGGGEECC------------------------------
T ss_pred HHHHHHHcCCeecC-CCCceEEeecccccCCCCCCccceeeecHHHhhhcC-------CCHHHHhhhHHHHHHHHHHCCC
Confidence 99999999999999 999999997643 57999999999996 6777766 799999999
Q ss_pred hHHHHHHH
Q 003129 428 PQERMSVL 435 (845)
Q Consensus 428 P~eR~~~i 435 (845)
|++|++.|
T Consensus 140 P~~R~~~l 147 (148)
T 3qir_A 140 PKQHHSAL 147 (148)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 99999865
No 17
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.82 E-value=8.4e-21 Score=221.03 Aligned_cols=124 Identities=22% Similarity=0.474 Sum_probs=102.6
Q ss_pred eccccccccCchHHHHHHHh---cCCCCCCchhHHH--HHHHhcCcEEEEee------cCceEEEeccCcccccccceec
Q 003129 276 DVSTTMIIQPGPVVDFLIAN---QNVRDPFSIDWAK--AKRTLKNLRIKTIT------SNQEYKITGLSEKLCKEQMFSL 344 (845)
Q Consensus 276 Dvs~~~F~~~~~v~d~l~~~---~~~~~~~~~d~~~--~~~~Lkgl~V~~~~------~~r~~kI~gi~~~~~~~~~F~~ 344 (845)
+...+.|++++||+|+|.++ .+.++++.+||.+ ++++||||+|+++| .+|.|+|.||+..+|.+++|+.
T Consensus 375 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~f~~ 454 (509)
T 1r6z_P 375 DISHKSFPISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH 454 (509)
T ss_dssp CSSCCCSSCEEEHHHHHHHHTTCSCCCTTCCGGGGHHHHHHHHTTCEEEECCCGGGCCCCEEEECCEEEEEETTTCEEEE
T ss_pred hhhhhccCCCccHHHHHHHHhhccccCCccccchhHHHHHHHhCCcEEEEecCCCccCCCCeEEEeeCCCCChhhcEecc
Confidence 44566789999999999985 3556777788776 99999999999999 4788999999999999999987
Q ss_pred ccCCCCCCCCCccceeeeHHHHHHHhcCCcccCCCCCcEEEcCCCCCCceecccceEEcCCccccccCC
Q 003129 345 KQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINVGKPKRPTYIPLELCELVSLQRYTKALT 413 (845)
Q Consensus 345 ~~~~~~~~~~~~~~~~itv~eYf~~~y~i~L~~~p~lP~v~vg~~~~~~ylP~Elc~i~~~Qr~~~~ls 413 (845)
++ ++|||+|||+ +||++|+| |+||||++|++++++|||||||.|+++|||+++||
T Consensus 455 ~~------------~~~sv~~yf~-~~~~~l~~-p~lp~v~~~~~~~~~~~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 455 DG------------KKVTIASYFH-SRNYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp TT------------EEEEHHHHHH-HTTCCCSC-TTSEEEECSCTTSCCEECGGGEEEEC---------
T ss_pred CC------------eEEEHHHHHH-HcCCcccC-CCCCeEecCCCCCCceecceeeEecCCccccccCC
Confidence 42 5899999999 89999999 99999999999999999999999999999999886
No 18
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.82 E-value=1.4e-20 Score=174.51 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=91.1
Q ss_pred chHHHHHHHhcCCCCCCchhHHHHHHHhcCcEEEEeecCceEEEeccCcccccccceecccCCCCCCCCCccceeeeHHH
Q 003129 286 GPVVDFLIANQNVRDPFSIDWAKAKRTLKNLRIKTITSNQEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYD 365 (845)
Q Consensus 286 ~~v~d~l~~~~~~~~~~~~d~~~~~~~Lkgl~V~~~~~~r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~itv~e 365 (845)
+||+|+|.+.....+ ..-.++++++.|+|+.|.+.|+|+.|+|.+|++..++..+|..++ |.++||+|
T Consensus 2 ~tvld~~~~~~~~~~-~~~~~~~~~k~l~G~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~d-----------g~~~T~~e 69 (124)
T 3o7v_X 2 ETVLDFMFNFYHQTE-EHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKAD-----------GSEVSFLE 69 (124)
T ss_dssp CBHHHHHHHSCCCSS-HHHHHHHHHHHHTTCEEEETTSSCEEECCEEETTCCTTCEEECTT-----------SCEEEHHH
T ss_pred ccHHHHHHHHHHhcc-cHHHHHHHHHHcCCCEEEEeeCCeEEEEeeeCCCCCccCcccCCC-----------CCeeeHHH
Confidence 689999988643211 122467899999999999999999999999999999999997643 24899999
Q ss_pred HHHHhcCCcccCCCCCcEEEcCCCC---------CCceecccceEEcCCccccccCCHHHHH
Q 003129 366 YFVNNRNIDLRYSGDLPCINVGKPK---------RPTYIPLELCELVSLQRYTKALTNLQRA 418 (845)
Q Consensus 366 Yf~~~y~i~L~~~p~lP~v~vg~~~---------~~~ylP~Elc~i~~~Qr~~~~ls~~q~~ 418 (845)
||+++||+.|++ ++||||.++.++ +++|||||||.++| |++++|+
T Consensus 70 Yyk~kY~i~I~~-~~QPLL~~~~k~~~~~~~~~~~~iyLipELC~ltG-------ltd~~r~ 123 (124)
T 3o7v_X 70 YYRKQYNQEITD-LKQPMLVSQPKRRRGPGGTLPGPAMLIPELCYLTG-------LTDKMRN 123 (124)
T ss_dssp HHHHHHCCCCCC-SSCCEEEECCC----------CCEEECGGGEECCC-------CC-----
T ss_pred HHHHHhCceecC-CCcceEEEeeecccCCCCCCcceEEechhheeccC-------CChHhcc
Confidence 999999999999 999999997432 67999999999997 6777765
No 19
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=98.64 E-value=2.1e-08 Score=119.72 Aligned_cols=85 Identities=24% Similarity=0.383 Sum_probs=72.4
Q ss_pred HHHHHhcCcEEEEeecC-ceEEEeccCcccccccceecccCCCCCCCCCccceeeeHHHHHHHhcCCcccCCCCCcEEEc
Q 003129 308 KAKRTLKNLRIKTITSN-QEYKITGLSEKLCKEQMFSLKQKNVKDDDGEVQELEITVYDYFVNNRNIDLRYSGDLPCINV 386 (845)
Q Consensus 308 ~~~~~Lkgl~V~~~~~~-r~~kI~gi~~~~~~~~~F~~~~~~~~~~~~~~~~~~itv~eYf~~~y~i~L~~~p~lP~v~v 386 (845)
.+.+.|+|..|.|.|+| |.|+|.++++...+.++|+.++ ..+|+.|||+++||++|++ ++||+|.+
T Consensus 151 ~~~~~l~g~vV~t~ynn~r~Y~i~~id~d~~P~S~F~~~~------------~~~Ty~dYYk~ky~i~I~d-~~QPLL~~ 217 (756)
T 2qvw_A 151 TLSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRAN------------ESITYMRYYATAHNIHLRA-ADLPLVAA 217 (756)
T ss_dssp -CTTTSTTCEEEETTTTTEEEEEEEEEEEEETTSEEEETT------------EEEEHHHHHHHTTCCCCSC-TTSEEEEE
T ss_pred hhHHHhCCCEEecCCCCceEEEEEEecCCCCCCCcCCCCC------------CCCCHHHHHHHHcCccccc-CCCCeEEE
Confidence 45678999999999999 9999999999888888997542 4899999999999999999 99999986
Q ss_pred CCC------------------CCCceecccceEEcCC
Q 003129 387 GKP------------------KRPTYIPLELCELVSL 405 (845)
Q Consensus 387 g~~------------------~~~~ylP~Elc~i~~~ 405 (845)
... .+.++||||||.+++.
T Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~~~v~L~PELC~vt~L 254 (756)
T 2qvw_A 218 VRLDDLKDHQIPAPGSWDDLAPKLRFLPPELCLLLPD 254 (756)
T ss_dssp EETTTTTTCCCCSTTC-CCSCSSCEEECTTTCEECCT
T ss_pred EecccccccccccccccccCCccceeeCHHHheeecC
Confidence 321 1247999999999975
No 20
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=83.76 E-value=7.1 Score=36.98 Aligned_cols=105 Identities=25% Similarity=0.320 Sum_probs=61.4
Q ss_pred CCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhc
Q 003129 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (845)
Q Consensus 647 ~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~ 725 (845)
.|.-|=++|+||-.. .-+|+++|.-.|. |.-+.|+- .++.. +-.+| =.+|+|.|..-|..
T Consensus 16 ~P~RIE~fDiSh~~G----~~~VasmVVf~~g~p~K~~YRr-f~I~~---~g~DD----------ya~M~Evl~RR~~r- 76 (159)
T 2nrr_A 16 FPYRIEGIDISHLQG----KYTVASLVVFEDGFPKKGDYRR-YKIEQ---DHPDD----------YESIRTVVKRRYSK- 76 (159)
T ss_dssp CCCEEEEEEEECC-------CCEEEEEEEETTEECGGGCEE-EEC--------CH----------HHHHHHHHHHHHTT-
T ss_pred CCCEEEEEECCccCC----ccceEEEEEEeCCccChhhCce-eecCC---CCCCH----------HHHHHHHHHHHhcc-
Confidence 367899999999753 2468888776653 33345553 33322 11233 35889988776653
Q ss_pred CCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeeccccccccC
Q 003129 726 GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQS 787 (845)
Q Consensus 726 ~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~~ 787 (845)
..+|+-|+| || +.||+.. .++++.+++-. +.+|-+.|+ ..++|-.
T Consensus 77 -~~~PDLilI--DG-GkgQl~a--------A~~vl~elg~~----i~v~glAK~-~e~l~~~ 121 (159)
T 2nrr_A 77 -HPLPNLLFV--DG-GIGQVNA--------AIEALKEIGKD----CPVVGLAKK-EETVVFE 121 (159)
T ss_dssp -SCCCSEEEE--SS-CHHHHHH--------HHHHHHHTTCC----CCEEEEC-----CEEET
T ss_pred -CCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCCC----ccEEEEEcC-CcEEEeC
Confidence 268998887 77 6787654 46777777532 457777787 3455543
No 21
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=73.96 E-value=17 Score=36.44 Aligned_cols=104 Identities=25% Similarity=0.322 Sum_probs=65.6
Q ss_pred CCEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHhc
Q 003129 647 VPTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTSS 725 (845)
Q Consensus 647 ~~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~~ 725 (845)
.|.-|=++|+||-.. .-+|+++|.-.|. |.-+.|+- +++.. +-.+| =.+|+|.|..-|..
T Consensus 21 ~p~rIE~fDiSh~~G----~~~V~smVvf~~g~p~k~~YRr-f~i~~---~g~DD----------ya~m~Evl~RR~~r- 81 (220)
T 2nrt_A 21 FPYRIEGIDISHLQG----KYTVASLVVFEDGFPKKGDYRR-YKIEQ---DHPDD----------YESIRTVVKRRYSK- 81 (220)
T ss_dssp CCCEEEEEEEEEETT----TEEEEEEEEEETTEECGGGCEE-EEEEC---SSCCH----------HHHHHHHHHHHHTT-
T ss_pred CCCEEEEEECCccCC----ccceEEEEEEeCCccChhhCce-eeCCC---CCCCH----------HHHHHHHHHHHhcc-
Confidence 367889999999753 2468888776653 33345553 33322 11233 35888988776653
Q ss_pred CCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeecccccccc
Q 003129 726 GKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEACKFLDEKWSPKFAVIVAQKNHHTKFFQ 786 (845)
Q Consensus 726 ~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~~~~~~~~~Pkit~Ivv~KrhhtRff~ 786 (845)
..+|+-|+| || +.||+.. .++++.+++- .+.+|-+.|+ ..++|-
T Consensus 82 -~~~PDLili--DG-GkgQl~~--------a~~vl~~lg~----~i~v~glaK~-~e~l~~ 125 (220)
T 2nrt_A 82 -HPLPNLLFV--DG-GIGQVNA--------AIEALKEIGK----DCPVVGLAKK-EETVVF 125 (220)
T ss_dssp -SCCCSEEEE--SS-SHHHHHH--------HHHHHHHTTC----CCCEEEECTT-TCCEEE
T ss_pred -CCCCCEEEE--eC-CHHHHHH--------HHHHHHHcCC----CCeEEEEECC-CcEEEe
Confidence 268998887 77 6787654 4667777753 2457778887 344554
No 22
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=67.50 E-value=1.1 Score=42.13 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEeecCChhHHHHHHHHHHHH----HHHHHHHccCC----CCCeEEEEEEeec
Q 003129 715 RELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQVLNVELNQ----IIEACKFLDEK----WSPKFAVIVAQKN 779 (845)
Q Consensus 715 ~e~L~~f~~~~~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~----I~~A~~~~~~~----~~Pkit~Ivv~Kr 779 (845)
.+.|+.|.++.++.+|...+||-|+++|.+.......|++- +++++..|+.. |.-.+|+||-.+.
T Consensus 45 ~~eL~~WQ~~WRkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~ 117 (160)
T 3qbz_A 45 PKELLEWQTNWKKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRS 117 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSC
T ss_pred HHHHHHHHHHHHHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCc
Confidence 35678888777778998889999999998666555556554 55777777643 6667888775443
No 23
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=56.00 E-value=16 Score=38.39 Aligned_cols=66 Identities=17% Similarity=0.193 Sum_probs=50.2
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
.+.++++....|.|.++..-++..+..|..+|...+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 43 v~~l~~~~g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D 109 (303)
T 4b4u_A 43 VEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNAN 109 (303)
T ss_dssp HHHHHHHHSCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCC
Confidence 344554444578898888877556889999999999999999998875 455666677888888853
No 24
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=46.50 E-value=34 Score=35.87 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=54.8
Q ss_pred HHHHHHHHhhCC-CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc--CCCcee
Q 003129 557 EKMFDEIQSKLP-GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK--LGGLNS 631 (845)
Q Consensus 557 e~~~~~l~~~~~-~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK--LGG~n~ 631 (845)
..-++.++++.. ..|.|.++..-++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.- .-|+.-
T Consensus 23 ~~~v~~l~~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlV 101 (300)
T 4a26_A 23 KDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIV 101 (300)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEE
Confidence 333445555534 468899888877456889999999999999999987764 456666678888899864 556643
No 25
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=45.93 E-value=92 Score=31.16 Aligned_cols=100 Identities=23% Similarity=0.288 Sum_probs=58.1
Q ss_pred CEEEEEEeeecCCCCCCCCCeEEEEEEecCC-CcccceeeEEEeccCCcccccccccccCCcchHHHHHHHHHHHHHh--
Q 003129 648 PTIILGMDVSHGSPGHSDIPSIAAVVSSRHW-PLISRYRAAVRTQSPKVEMIDSLFKKVSDTEDEGIIRELLLDFYTS-- 724 (845)
Q Consensus 648 ~tMIiG~DVsH~~~~~~~~pSiaavVaS~d~-~~~~~y~~~~~~Q~~~~E~i~~l~~~~~~~~~~~~i~e~L~~f~~~-- 724 (845)
|.-|=++|+||-.. .-+|+++|.-.|. |.-+.|+- +++.. .+-.+| =.+|+|.|..-|..
T Consensus 14 p~rIE~fDiSh~~G----~~~V~smVvf~~g~p~k~~YR~-f~i~~--~~g~DD----------ya~m~Evl~RR~~r~~ 76 (226)
T 3c65_A 14 PRRIEAFDNSNIYG----ADPVSALVVFLDGKPAKKEYRK-YKVKT--VAGPND----------YETMREVVRRRYTRVL 76 (226)
T ss_dssp CSEEEEEEEEESSS----SSCEEEEEEEETTEECGGGCEE-EECCC--CCTTCH----------HHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccCC----cCceEEEEEEeCCccChhhCce-eecCC--CCCCcH----------HHHHHHHHHHHHhhhh
Confidence 67889999999753 2468888776654 33345553 33321 111122 24777777665543
Q ss_pred -cCCCCCcEEEEEeecCChhHHHHHHHHHHHHHHHHH-HHccCCCCCeEEEEEEeec
Q 003129 725 -SGKRKPEQIIIFRDGVSESQFNQVLNVELNQIIEAC-KFLDEKWSPKFAVIVAQKN 779 (845)
Q Consensus 725 -~~~~~P~~IIiyRDGVSEgqf~~Vl~~El~~I~~A~-~~~~~~~~Pkit~Ivv~Kr 779 (845)
....+|+-|+| || +.||+.. .++++ .+++- .+.+|-+.|+
T Consensus 77 ~e~~~~PDLili--DG-GkgQl~~--------a~~vl~~~lg~----~i~v~glaK~ 118 (226)
T 3c65_A 77 KEGLPLPDLIII--DG-GKGHLSA--------VRDVLENELGL----DVPLAGLAKD 118 (226)
T ss_dssp HHTCCCCSEEEE--SS-CHHHHHH--------HHHHHHHTSCC----CCCEEEC---
T ss_pred cccCCCCCEEEE--eC-CHHHHHH--------HHHHHHHhcCC----CceEEEEEcC
Confidence 12268998887 77 6777654 46777 46653 2446666674
No 26
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=44.39 E-value=37 Score=35.62 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=51.4
Q ss_pred HHHHHHHHhhC-CCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 557 EKMFDEIQSKL-PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 557 e~~~~~l~~~~-~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
..-++.++++. ...|.|.++..-++..+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 21 ~~~v~~l~~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D 91 (301)
T 1a4i_A 21 KNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNED 91 (301)
T ss_dssp HHHHHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 33344555543 1348999888877567899999999999999999988864 455666677888899853
No 27
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=43.67 E-value=40 Score=35.06 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=52.9
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc--CCCcee
Q 003129 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK--LGGLNS 631 (845)
Q Consensus 559 ~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK--LGG~n~ 631 (845)
-.+.++++....|.|.++.+-++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.- .-|+.-
T Consensus 24 ~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlV 99 (286)
T 4a5o_A 24 RVTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILV 99 (286)
T ss_dssp HHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEE
T ss_pred HHHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 3444544433458898888877556889999999999999999987764 455666678888889863 556543
No 28
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=40.56 E-value=37 Score=35.34 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=50.2
Q ss_pred HHHHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 557 EKMFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 557 e~~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
....+.++++....|.|.++..-++..+..|...|...+.+.||.+..+.. ......-+...+.++|.-
T Consensus 20 ~~~v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D 89 (288)
T 1b0a_A 20 AQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNAD 89 (288)
T ss_dssp HHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 333445554422348899888877566899999999999999999987764 455666677788888854
No 29
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=39.63 E-value=47 Score=34.47 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=49.3
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc
Q 003129 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 559 ~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK 625 (845)
..+.++++ ...|.|.++..-++..+..|...|...+.+.||.+..+.. ......-+.+.+.++|.-
T Consensus 22 ~v~~l~~~-g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D 88 (281)
T 2c2x_A 22 RVAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELNAN 88 (281)
T ss_dssp HHHHHHHT-TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhc-CCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 34445443 2348898888876566889999999999999999988764 455666677888888854
No 30
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=38.44 E-value=42 Score=34.90 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=52.5
Q ss_pred HHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHhc--CCCcee
Q 003129 560 FDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINAK--LGGLNS 631 (845)
Q Consensus 560 ~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINaK--LGG~n~ 631 (845)
.+.++++....|.|.++..-++..+..|...|...+.+.||.+..+.. ......-+...+.++|.- .-|+.-
T Consensus 24 v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlv 98 (285)
T 3l07_A 24 VQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILV 98 (285)
T ss_dssp HHHHHHHHCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEE
T ss_pred HHHHHhcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEE
Confidence 344444322368898888877556889999999999999999987764 455666678888899864 556643
No 31
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=37.77 E-value=50 Score=34.38 Aligned_cols=74 Identities=18% Similarity=0.146 Sum_probs=53.9
Q ss_pred HHHHHHhhCCCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeec-cccChhHHHHHHHHHHh--cCCCceeec
Q 003129 559 MFDEIQSKLPGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAP-MRVNDQYLTNVLLKINA--KLGGLNSLL 633 (845)
Q Consensus 559 ~~~~l~~~~~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~-~k~~~q~~~Ni~lKINa--KLGG~n~~l 633 (845)
.++.++++. ..|.|.++..-++..+..|...|...+.+.||.+..+.. ......-+...+.++|. +.-|++-.+
T Consensus 23 ~v~~l~~~~-~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvql 99 (285)
T 3p2o_A 23 KNQFLKSKG-IESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQL 99 (285)
T ss_dssp HHHHHHTTT-CCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred HHHHHHhcC-CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecC
Confidence 344454432 378898888877556889999999999999999987764 45566667888889986 466765433
No 32
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=29.10 E-value=83 Score=33.26 Aligned_cols=67 Identities=13% Similarity=0.288 Sum_probs=47.7
Q ss_pred HHHHHHHHhhCC-CCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEeeccccChhHHHHHHHHHHhc
Q 003129 557 EKMFDEIQSKLP-GAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMAPMRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 557 e~~~~~l~~~~~-~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~~~k~~~q~~~Ni~lKINaK 625 (845)
...++.++.+.. ..|.|.++...++..+..|..+|...+.+.||.+..+.... +.-+.+.+.++|.-
T Consensus 22 ~~~v~~l~~~~~~~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~--~~~l~~~i~~lN~d 89 (320)
T 1edz_A 22 INNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIED--KDFLEEAIIQANGD 89 (320)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEECSS--GGGHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCCeEEEEEECCchhHHHHHHHHHHHHHHcCCEEEEEECCC--hHHHHHHHHHHcCC
Confidence 334445554422 34889988887756688999999999999999998776432 24466788888853
No 33
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=22.21 E-value=1.5e+02 Score=30.58 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=44.0
Q ss_pred CCCCeEEEEEcCCCCCCcchHHHHHHhhcccCceeeEee-ccccChhHHHHHHHHHHhc
Q 003129 568 PGAPQFLLCLLPERKNSDLYGPWKRKNLADFGIVTQCMA-PMRVNDQYLTNVLLKINAK 625 (845)
Q Consensus 568 ~~~~~~vl~Ilp~~~~~~~Y~~iK~~~~~~~gI~TQci~-~~k~~~q~~~Ni~lKINaK 625 (845)
...|.|.++...++..+..|...|...+.+.|| +..+. +......-+.+.+.++|.-
T Consensus 25 ~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D 82 (276)
T 3ngx_A 25 GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKD 82 (276)
T ss_dssp TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHC
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 456889888887645678899999999999999 77665 4555656677778888854
Done!