Query 003131
Match_columns 845
No_of_seqs 485 out of 3736
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 17:36:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0207 Cation transport ATPas 100.0 2E-123 3E-128 1029.6 63.7 754 53-845 1-764 (951)
2 COG2217 ZntA Cation transport 100.0 7E-104 1E-108 897.7 65.7 575 202-845 2-578 (713)
3 PRK10671 copA copper exporting 100.0 3.7E-94 8E-99 864.6 74.2 654 129-844 4-690 (834)
4 PRK11033 zntA zinc/cadmium/mer 100.0 3.5E-85 7.6E-90 770.1 64.1 556 201-844 52-608 (741)
5 TIGR01511 ATPase-IB1_Cu copper 100.0 7.6E-79 1.7E-83 698.1 53.9 444 346-844 1-445 (562)
6 TIGR01525 ATPase-IB_hvy heavy 100.0 5.9E-68 1.3E-72 610.8 50.9 419 365-844 1-425 (556)
7 TIGR01647 ATPase-IIIA_H plasma 100.0 2.5E-68 5.5E-73 629.5 47.4 411 397-844 55-482 (755)
8 PRK01122 potassium-transportin 100.0 2E-67 4.3E-72 600.2 51.4 408 401-845 69-486 (679)
9 TIGR01512 ATPase-IB2_Cd heavy 100.0 1E-67 2.3E-72 604.5 47.8 403 365-845 1-404 (536)
10 TIGR01497 kdpB K+-transporting 100.0 2.7E-66 6E-71 589.3 51.3 413 396-845 63-487 (675)
11 PRK14010 potassium-transportin 100.0 1.8E-65 3.9E-70 583.6 51.8 399 407-845 75-482 (673)
12 PRK10517 magnesium-transportin 100.0 3E-65 6.4E-70 609.9 42.5 416 396-844 121-590 (902)
13 TIGR01524 ATPase-IIIB_Mg magne 100.0 2E-64 4.4E-69 603.7 47.5 409 400-844 90-555 (867)
14 PRK15122 magnesium-transportin 100.0 1.5E-63 3.2E-68 596.5 46.4 415 396-844 110-590 (903)
15 TIGR01522 ATPase-IIA2_Ca golgi 100.0 5.8E-63 1.3E-67 595.2 42.9 408 403-844 85-568 (884)
16 KOG0204 Calcium transporting A 100.0 5.5E-63 1.2E-67 539.6 29.3 466 348-844 143-687 (1034)
17 KOG0202 Ca2+ transporting ATPa 100.0 4.5E-63 9.9E-68 541.2 28.5 435 398-844 78-624 (972)
18 TIGR01517 ATPase-IIB_Ca plasma 100.0 2.3E-61 5E-66 584.9 45.4 429 396-844 127-619 (941)
19 TIGR01494 ATPase_P-type ATPase 100.0 2.2E-60 4.7E-65 543.4 41.1 379 405-843 3-386 (499)
20 COG0474 MgtA Cation transport 100.0 1.6E-61 3.4E-66 579.9 30.3 413 403-844 108-587 (917)
21 TIGR01523 ATPase-IID_K-Na pota 100.0 3.3E-59 7.1E-64 564.9 47.5 423 400-844 83-686 (1053)
22 TIGR01657 P-ATPase-V P-type AT 100.0 2.3E-59 5E-64 572.5 44.6 428 396-844 191-696 (1054)
23 TIGR01106 ATPase-IIC_X-K sodiu 100.0 3.6E-59 7.7E-64 567.0 45.5 416 397-844 103-608 (997)
24 TIGR01116 ATPase-IIA1_Ca sarco 100.0 1.4E-58 2.9E-63 558.4 48.8 437 396-844 35-577 (917)
25 KOG0208 Cation transport ATPas 100.0 9.5E-54 2E-58 474.0 35.3 441 377-845 198-746 (1140)
26 TIGR01652 ATPase-Plipid phosph 100.0 1.6E-49 3.5E-54 487.6 39.6 434 394-844 50-671 (1057)
27 COG2216 KdpB High-affinity K+ 100.0 1.2E-47 2.7E-52 398.0 34.1 408 404-845 72-488 (681)
28 KOG0205 Plasma membrane H+-tra 100.0 6.1E-49 1.3E-53 416.4 24.4 415 392-844 92-532 (942)
29 KOG0203 Na+/K+ ATPase, alpha s 100.0 2.3E-49 4.9E-54 432.7 12.1 426 398-844 126-630 (1019)
30 PLN03190 aminophospholipid tra 100.0 1.2E-45 2.5E-50 447.9 43.7 436 394-844 136-766 (1178)
31 KOG0209 P-type ATPase [Inorgan 100.0 1.1E-46 2.3E-51 408.7 22.8 424 395-844 214-715 (1160)
32 KOG0210 P-type ATPase [Inorgan 100.0 1.5E-39 3.3E-44 346.9 23.0 421 393-844 127-698 (1051)
33 KOG0206 P-type ATPase [General 100.0 7.6E-36 1.7E-40 349.3 26.3 437 393-845 79-692 (1151)
34 PF00122 E1-E2_ATPase: E1-E2 A 100.0 1.5E-35 3.3E-40 305.1 22.3 223 403-643 1-230 (230)
35 PF00702 Hydrolase: haloacid d 99.8 1.6E-19 3.4E-24 184.2 10.3 167 647-844 1-167 (215)
36 KOG0207 Cation transport ATPas 99.6 3.4E-14 7.3E-19 160.4 14.4 144 47-195 70-213 (951)
37 PF00403 HMA: Heavy-metal-asso 99.2 3.7E-11 8E-16 95.3 7.5 62 131-192 1-62 (62)
38 PRK10671 copA copper exporting 99.2 3.4E-10 7.3E-15 137.6 16.0 142 46-195 3-163 (834)
39 PF00403 HMA: Heavy-metal-asso 99.1 3.3E-10 7.2E-15 89.8 8.6 62 49-110 1-62 (62)
40 COG2608 CopZ Copper chaperone 99.1 4.7E-10 1E-14 90.7 8.1 67 129-195 3-69 (71)
41 COG2608 CopZ Copper chaperone 99.1 7.1E-10 1.5E-14 89.7 8.6 68 45-112 1-68 (71)
42 COG2217 ZntA Cation transport 98.0 8.8E-06 1.9E-10 94.8 7.0 66 129-195 3-69 (713)
43 PRK11033 zntA zinc/cadmium/mer 97.9 0.0057 1.2E-07 73.6 29.4 66 128-195 53-118 (741)
44 TIGR00003 copper ion binding p 97.3 0.0013 2.8E-08 51.4 8.6 66 46-111 2-67 (68)
45 TIGR00003 copper ion binding p 97.3 0.0011 2.4E-08 51.8 7.7 64 130-193 4-67 (68)
46 KOG4656 Copper chaperone for s 97.0 0.0016 3.4E-08 61.6 6.4 63 129-195 8-70 (247)
47 PLN02957 copper, zinc superoxi 97.0 0.0027 5.8E-08 65.0 8.7 66 129-198 7-72 (238)
48 KOG4656 Copper chaperone for s 96.8 0.0042 9.1E-08 58.9 7.7 65 45-113 6-70 (247)
49 PLN02957 copper, zinc superoxi 96.8 0.0047 1E-07 63.2 8.9 67 46-116 6-72 (238)
50 KOG1603 Copper chaperone [Inor 96.8 0.0035 7.6E-08 51.1 6.3 52 136-190 12-63 (73)
51 KOG1603 Copper chaperone [Inor 96.4 0.0063 1.4E-07 49.6 5.4 56 50-108 8-63 (73)
52 COG0560 SerB Phosphoserine pho 92.6 0.18 4E-06 50.6 5.3 43 803-845 76-118 (212)
53 PF12710 HAD: haloacid dehalog 91.6 0.2 4.2E-06 49.5 4.2 38 807-844 92-129 (192)
54 TIGR02052 MerP mercuric transp 91.2 1.3 2.8E-05 37.1 8.3 66 130-195 25-90 (92)
55 COG4087 Soluble P-type ATPase 90.9 0.55 1.2E-05 41.9 5.5 52 792-844 18-69 (152)
56 TIGR01670 YrbI-phosphatas 3-de 90.9 0.46 1E-05 45.2 5.7 47 792-844 22-68 (154)
57 TIGR00338 serB phosphoserine p 90.0 0.53 1.2E-05 47.6 5.7 41 804-844 85-125 (219)
58 COG2179 Predicted hydrolase of 89.9 1.6 3.5E-05 41.0 8.0 66 777-844 21-86 (175)
59 cd01427 HAD_like Haloacid deha 89.9 0.59 1.3E-05 42.7 5.4 44 800-843 20-63 (139)
60 PF00873 ACR_tran: AcrB/AcrD/A 89.7 51 0.0011 42.0 24.1 199 47-248 44-276 (1021)
61 TIGR02052 MerP mercuric transp 89.7 2.4 5.2E-05 35.4 8.7 65 47-111 24-88 (92)
62 TIGR01490 HAD-SF-IB-hyp1 HAD-s 88.9 0.56 1.2E-05 46.8 4.8 45 801-845 84-128 (202)
63 TIGR01488 HAD-SF-IB Haloacid D 88.6 0.78 1.7E-05 44.5 5.5 40 805-844 74-113 (177)
64 KOG1615 Phosphoserine phosphat 88.6 0.86 1.9E-05 43.7 5.3 41 804-844 88-128 (227)
65 TIGR01662 HAD-SF-IIIA HAD-supe 88.4 1.1 2.3E-05 41.3 5.9 59 786-844 2-73 (132)
66 TIGR01491 HAD-SF-IB-PSPlk HAD- 86.9 1.1 2.4E-05 44.4 5.6 41 804-844 80-120 (201)
67 PLN02954 phosphoserine phospha 86.6 1.2 2.6E-05 45.3 5.6 41 804-844 84-124 (224)
68 TIGR01668 YqeG_hyp_ppase HAD s 86.2 2.7 5.8E-05 40.6 7.6 64 779-844 20-84 (170)
69 PRK06769 hypothetical protein; 85.9 1.2 2.7E-05 43.1 5.1 49 783-831 3-55 (173)
70 PRK01158 phosphoglycolate phos 85.8 1.8 3.8E-05 44.2 6.5 56 785-844 4-60 (230)
71 PRK00192 mannosyl-3-phosphogly 85.3 1.8 3.9E-05 45.5 6.4 57 785-844 5-61 (273)
72 TIGR01684 viral_ppase viral ph 85.1 2.1 4.7E-05 44.5 6.5 57 785-844 127-186 (301)
73 TIGR02137 HSK-PSP phosphoserin 85.0 1.5 3.2E-05 43.8 5.3 40 804-844 68-107 (203)
74 PRK14054 methionine sulfoxide 84.6 1.7 3.8E-05 41.6 5.2 48 140-187 10-76 (172)
75 PRK10513 sugar phosphate phosp 84.6 2 4.4E-05 45.0 6.4 57 785-844 4-60 (270)
76 PRK10976 putative hydrolase; P 83.7 2.4 5.1E-05 44.4 6.4 57 785-844 3-59 (266)
77 PHA03398 viral phosphatase sup 83.6 2.8 6E-05 43.8 6.6 57 785-844 129-188 (303)
78 PRK15126 thiamin pyrimidine py 83.1 2.6 5.6E-05 44.3 6.4 57 785-844 3-59 (272)
79 PRK13222 phosphoglycolate phos 82.7 2.2 4.8E-05 43.2 5.6 42 803-844 92-133 (226)
80 PRK10530 pyridoxal phosphate ( 82.5 3.5 7.6E-05 43.2 7.2 57 785-844 4-60 (272)
81 PRK03669 mannosyl-3-phosphogly 82.1 3.1 6.7E-05 43.7 6.5 58 784-844 7-64 (271)
82 TIGR01489 DKMTPPase-SF 2,3-dik 81.8 2.3 5E-05 41.6 5.2 42 803-844 71-112 (188)
83 PF13344 Hydrolase_6: Haloacid 81.2 0.81 1.8E-05 39.9 1.4 46 799-844 9-57 (101)
84 TIGR00915 2A0602 The (Largely 80.8 1.7E+02 0.0038 37.2 22.4 141 47-189 44-210 (1044)
85 PRK05528 methionine sulfoxide 80.7 3.3 7.1E-05 39.0 5.3 48 140-187 8-69 (156)
86 COG2177 FtsX Cell division pro 80.6 83 0.0018 33.4 21.1 78 140-234 71-150 (297)
87 PRK10826 2-deoxyglucose-6-phos 80.6 2.6 5.6E-05 42.7 5.2 42 803-844 91-132 (222)
88 cd00371 HMA Heavy-metal-associ 79.7 10 0.00023 26.4 7.2 57 134-191 4-60 (63)
89 TIGR01454 AHBA_synth_RP 3-amin 79.6 2.9 6.4E-05 41.7 5.1 41 804-844 75-115 (205)
90 KOG4383 Uncharacterized conser 79.4 12 0.00025 42.9 9.8 51 794-844 816-866 (1354)
91 PRK11133 serB phosphoserine ph 79.4 2.9 6.4E-05 44.9 5.3 41 804-844 181-221 (322)
92 TIGR01449 PGP_bact 2-phosphogl 79.2 3 6.5E-05 41.8 5.1 41 804-844 85-125 (213)
93 PRK09484 3-deoxy-D-manno-octul 79.0 5.9 0.00013 38.8 6.9 62 783-844 20-88 (183)
94 TIGR01428 HAD_type_II 2-haloal 78.3 3.7 8.1E-05 40.6 5.4 41 804-844 92-132 (198)
95 COG0561 Cof Predicted hydrolas 77.8 3.5 7.6E-05 43.1 5.3 57 785-844 4-60 (264)
96 PRK10555 aminoglycoside/multid 77.5 1.8E+02 0.004 37.0 21.1 139 49-189 46-210 (1037)
97 PRK00058 methionine sulfoxide 77.2 3.8 8.3E-05 40.6 4.9 47 140-186 52-117 (213)
98 PRK13288 pyrophosphatase PpaX; 77.1 4 8.6E-05 41.1 5.3 41 804-844 82-122 (214)
99 PRK13014 methionine sulfoxide 76.9 3.4 7.3E-05 40.2 4.3 48 140-187 15-81 (186)
100 PRK11009 aphA acid phosphatase 76.4 4.8 0.0001 41.1 5.5 41 803-843 113-157 (237)
101 PRK09577 multidrug efflux prot 76.4 2E+02 0.0043 36.7 20.9 144 48-192 45-212 (1032)
102 TIGR03333 salvage_mtnX 2-hydro 76.3 4.8 0.0001 40.6 5.5 40 803-842 69-108 (214)
103 TIGR01548 HAD-SF-IA-hyp1 haloa 76.0 4.4 9.6E-05 40.1 5.2 43 802-844 104-146 (197)
104 TIGR01544 HAD-SF-IE haloacid d 74.8 5.5 0.00012 41.6 5.5 42 803-844 120-161 (277)
105 cd00371 HMA Heavy-metal-associ 74.8 22 0.00047 24.6 7.8 41 51-91 3-43 (63)
106 PRK09552 mtnX 2-hydroxy-3-keto 73.9 5.7 0.00012 40.1 5.5 38 804-841 74-111 (219)
107 PRK13223 phosphoglycolate phos 73.6 4.9 0.00011 42.2 5.0 43 802-844 99-141 (272)
108 PTZ00445 p36-lilke protein; Pr 73.6 5.2 0.00011 39.5 4.6 62 772-833 31-104 (219)
109 COG0225 MsrA Peptide methionin 73.5 6.4 0.00014 37.3 5.1 48 140-187 13-79 (174)
110 PLN02645 phosphoglycolate phos 73.3 4.1 8.9E-05 43.8 4.4 58 783-844 27-87 (311)
111 PRK13748 putative mercuric red 72.9 11 0.00023 44.4 8.1 65 132-197 4-68 (561)
112 PF13419 HAD_2: Haloacid dehal 72.3 4 8.8E-05 39.0 3.8 43 802-844 75-117 (176)
113 PRK08238 hypothetical protein; 72.1 6.3 0.00014 44.9 5.7 40 804-843 72-111 (479)
114 TIGR01545 YfhB_g-proteo haloac 72.0 7.4 0.00016 39.1 5.6 40 804-843 94-134 (210)
115 TIGR00401 msrA methionine-S-su 71.9 8 0.00017 36.2 5.4 47 140-186 7-72 (149)
116 COG1778 Low specificity phosph 71.7 5.6 0.00012 37.0 4.1 34 811-844 42-75 (170)
117 TIGR01681 HAD-SF-IIIC HAD-supe 71.6 6.7 0.00014 35.8 4.8 39 804-842 29-68 (128)
118 TIGR02253 CTE7 HAD superfamily 71.6 5.6 0.00012 40.1 4.7 41 804-844 94-134 (221)
119 TIGR01422 phosphonatase phosph 71.5 6 0.00013 41.0 5.1 41 804-844 99-139 (253)
120 PRK14054 methionine sulfoxide 71.4 6.6 0.00014 37.7 4.8 49 215-263 11-78 (172)
121 TIGR01509 HAD-SF-IA-v3 haloaci 71.4 6 0.00013 38.4 4.8 40 804-844 85-124 (183)
122 PRK13225 phosphoglycolate phos 71.2 7 0.00015 41.1 5.4 41 804-844 142-182 (273)
123 PHA02530 pseT polynucleotide k 71.1 5.4 0.00012 42.6 4.7 44 801-844 184-227 (300)
124 COG0546 Gph Predicted phosphat 70.9 7.6 0.00017 39.3 5.5 43 802-844 87-129 (220)
125 PF01625 PMSR: Peptide methion 70.7 9.3 0.0002 36.1 5.5 49 140-188 7-74 (155)
126 TIGR01672 AphA HAD superfamily 70.6 8 0.00017 39.5 5.5 40 805-844 115-158 (237)
127 PRK13748 putative mercuric red 70.5 14 0.0003 43.4 8.4 64 50-114 4-67 (561)
128 PRK11590 hypothetical protein; 70.2 8.3 0.00018 38.7 5.6 40 804-843 95-135 (211)
129 TIGR01664 DNA-3'-Pase DNA 3'-p 69.6 9.4 0.0002 36.7 5.5 60 785-844 14-94 (166)
130 PRK13226 phosphoglycolate phos 69.2 7.6 0.00017 39.5 5.1 41 804-844 95-135 (229)
131 PLN02887 hydrolase family prot 69.0 8.8 0.00019 44.7 6.1 59 783-844 307-365 (580)
132 PRK14010 potassium-transportin 69.0 2.3E+02 0.0049 34.0 17.7 72 767-839 441-521 (673)
133 TIGR01685 MDP-1 magnesium-depe 69.0 8.7 0.00019 37.2 5.1 50 795-844 36-86 (174)
134 TIGR03351 PhnX-like phosphonat 68.7 7.5 0.00016 39.2 5.0 42 803-844 86-127 (220)
135 TIGR01459 HAD-SF-IIA-hyp4 HAD- 68.6 6.7 0.00015 40.3 4.6 57 784-844 8-66 (242)
136 TIGR01656 Histidinol-ppas hist 68.1 8.4 0.00018 36.1 4.8 41 804-844 27-82 (147)
137 PLN03243 haloacid dehalogenase 68.1 7.9 0.00017 40.3 5.0 41 804-844 109-149 (260)
138 PRK15127 multidrug efflux syst 68.0 3.5E+02 0.0075 34.6 22.1 141 48-190 45-211 (1049)
139 TIGR01458 HAD-SF-IIA-hyp3 HAD- 67.7 9.6 0.00021 39.6 5.6 40 805-844 22-64 (257)
140 PLN02770 haloacid dehalogenase 67.0 9.3 0.0002 39.5 5.3 41 804-844 108-148 (248)
141 PRK13582 thrH phosphoserine ph 66.9 9.5 0.00021 37.9 5.2 40 804-844 68-107 (205)
142 TIGR01652 ATPase-Plipid phosph 66.5 1.4E+02 0.0031 38.0 16.6 20 462-481 94-113 (1057)
143 TIGR02009 PGMB-YQAB-SF beta-ph 65.1 8.1 0.00017 37.6 4.2 40 803-844 87-126 (185)
144 PRK11587 putative phosphatase; 63.5 10 0.00023 38.2 4.8 40 804-843 83-122 (218)
145 TIGR01517 ATPase-IIB_Ca plasma 62.8 1.3E+02 0.0028 37.9 15.0 36 592-627 325-360 (941)
146 PRK05550 bifunctional methioni 61.8 12 0.00026 39.0 4.8 48 139-186 133-199 (283)
147 TIGR01106 ATPase-IIC_X-K sodiu 61.1 2E+02 0.0044 36.4 16.4 201 406-625 115-326 (997)
148 PRK05528 methionine sulfoxide 61.1 16 0.00035 34.5 5.1 49 215-263 9-71 (156)
149 PRK13478 phosphonoacetaldehyde 60.9 13 0.00029 38.8 5.1 40 804-843 101-140 (267)
150 PF01206 TusA: Sulfurtransfera 60.8 50 0.0011 26.2 7.4 55 131-195 2-56 (70)
151 PRK14988 GMP/IMP nucleotidase; 59.5 16 0.00035 37.0 5.3 41 804-844 93-133 (224)
152 PTZ00174 phosphomannomutase; P 59.3 21 0.00046 36.8 6.2 52 784-838 5-56 (247)
153 PRK00058 methionine sulfoxide 58.6 51 0.0011 32.8 8.3 48 58-105 52-118 (213)
154 PRK14502 bifunctional mannosyl 58.6 14 0.00031 43.3 5.2 58 784-844 416-473 (694)
155 PRK13014 methionine sulfoxide 58.1 14 0.0003 35.9 4.3 49 215-263 16-83 (186)
156 TIGR01990 bPGM beta-phosphoglu 58.0 14 0.0003 35.9 4.5 40 803-844 86-125 (185)
157 COG0841 AcrB Cation/multidrug 58.0 82 0.0018 39.6 11.9 119 143-262 63-208 (1009)
158 PRK10187 trehalose-6-phosphate 57.7 18 0.0004 37.7 5.5 60 784-843 14-76 (266)
159 PF09419 PGP_phosphatase: Mito 57.5 24 0.00052 33.8 5.7 64 779-844 36-108 (168)
160 PRK10555 aminoglycoside/multid 57.4 88 0.0019 39.8 12.4 119 143-262 62-209 (1037)
161 TIGR02726 phenyl_P_delta pheny 57.0 15 0.00033 35.3 4.4 34 811-844 41-74 (169)
162 COG1888 Uncharacterized protei 56.9 57 0.0012 27.2 6.8 69 128-196 6-79 (97)
163 smart00577 CPDc catalytic doma 56.8 17 0.00036 34.2 4.5 43 801-844 42-84 (148)
164 PLN03017 trehalose-phosphatase 56.1 24 0.00052 38.4 6.1 59 779-838 106-166 (366)
165 PRK14501 putative bifunctional 56.1 22 0.00047 43.3 6.5 72 771-842 479-553 (726)
166 PRK06698 bifunctional 5'-methy 55.6 16 0.00034 41.7 5.0 41 804-844 330-370 (459)
167 PLN02575 haloacid dehalogenase 55.3 18 0.00038 39.8 5.0 41 804-844 216-256 (381)
168 TIGR01689 EcbF-BcbF capsule bi 54.2 16 0.00034 33.3 3.7 47 787-833 4-53 (126)
169 PF13380 CoA_binding_2: CoA bi 54.2 22 0.00049 31.7 4.7 39 805-843 64-103 (116)
170 COG1888 Uncharacterized protei 54.0 83 0.0018 26.3 7.2 70 44-113 4-78 (97)
171 KOG3040 Predicted sugar phosph 53.5 26 0.00057 34.3 5.2 47 794-840 13-59 (262)
172 PF00873 ACR_tran: AcrB/AcrD/A 53.1 57 0.0012 41.5 9.8 121 143-264 62-211 (1021)
173 TIGR00401 msrA methionine-S-su 52.8 23 0.0005 33.2 4.7 49 215-263 8-75 (149)
174 TIGR01686 FkbH FkbH-like domai 52.1 26 0.00057 37.7 5.7 60 785-844 4-75 (320)
175 TIGR01485 SPP_plant-cyano sucr 51.6 20 0.00044 36.9 4.6 57 788-844 5-61 (249)
176 PRK10614 multidrug efflux syst 51.6 5.7E+02 0.012 32.6 18.2 130 60-189 578-730 (1025)
177 PF15584 Imm44: Immunity prote 51.2 7.5 0.00016 32.4 1.0 19 461-479 13-31 (94)
178 TIGR02252 DREG-2 REG-2-like, H 49.9 22 0.00048 35.1 4.5 40 804-844 105-144 (203)
179 PRK10614 multidrug efflux syst 48.5 6.9E+02 0.015 31.9 28.5 143 47-190 46-212 (1025)
180 COG0647 NagD Predicted sugar p 48.3 22 0.00047 37.0 4.1 46 796-841 16-61 (269)
181 PF01206 TusA: Sulfurtransfera 48.2 59 0.0013 25.8 5.9 54 49-112 2-55 (70)
182 KOG0208 Cation transport ATPas 48.2 1.2E+02 0.0027 37.0 10.4 34 594-627 419-452 (1140)
183 TIGR02254 YjjG/YfnB HAD superf 47.8 24 0.00053 35.4 4.5 40 804-844 97-136 (224)
184 COG0225 MsrA Peptide methionin 47.7 29 0.00063 33.1 4.4 49 215-263 14-81 (174)
185 cd00860 ThrRS_anticodon ThrRS 47.2 52 0.0011 27.4 5.8 46 799-844 7-53 (91)
186 COG0841 AcrB Cation/multidrug 46.9 7.1E+02 0.015 31.6 28.4 134 58-193 60-213 (1009)
187 TIGR02247 HAD-1A3-hyp Epoxide 46.5 18 0.00039 36.1 3.2 30 803-832 93-122 (211)
188 smart00775 LNS2 LNS2 domain. T 46.2 39 0.00085 32.1 5.3 34 802-835 25-58 (157)
189 PRK01122 potassium-transportin 46.2 6E+02 0.013 30.6 16.0 72 767-839 445-525 (679)
190 PRK09449 dUMP phosphatase; Pro 46.1 30 0.00066 34.8 4.9 40 804-844 95-134 (224)
191 PF01625 PMSR: Peptide methion 45.5 39 0.00084 32.0 5.0 50 215-264 8-76 (155)
192 KOG1635 Peptide methionine sul 45.2 47 0.001 31.5 5.2 48 140-187 31-97 (191)
193 TIGR01261 hisB_Nterm histidino 44.7 33 0.00072 32.7 4.5 26 804-829 29-54 (161)
194 PRK08942 D,D-heptose 1,7-bisph 44.4 36 0.00078 33.1 4.9 27 804-830 29-55 (181)
195 PRK15127 multidrug efflux syst 44.3 1.7E+02 0.0036 37.4 11.8 119 143-262 62-209 (1049)
196 PRK11018 hypothetical protein; 43.9 1.7E+02 0.0038 23.9 8.1 57 130-196 9-65 (78)
197 TIGR01691 enolase-ppase 2,3-di 43.2 40 0.00087 34.1 5.1 41 801-841 92-132 (220)
198 PRK09577 multidrug efflux prot 42.6 1.9E+02 0.0042 36.8 12.0 120 143-263 62-209 (1032)
199 PLN02940 riboflavin kinase 42.5 30 0.00066 38.3 4.5 40 804-843 93-133 (382)
200 PRK15122 magnesium-transportin 42.1 74 0.0016 39.7 8.1 190 409-627 126-353 (903)
201 TIGR02251 HIF-SF_euk Dullard-l 41.8 45 0.00098 31.8 5.0 44 800-844 38-81 (162)
202 PLN02205 alpha,alpha-trehalose 41.5 60 0.0013 40.0 7.1 69 772-840 584-653 (854)
203 TIGR01549 HAD-SF-IA-v1 haloaci 41.5 42 0.00091 31.3 4.8 37 804-840 64-100 (154)
204 TIGR01524 ATPase-IIIB_Mg magne 40.8 2.4E+02 0.0051 35.2 12.2 195 402-625 96-318 (867)
205 TIGR01657 P-ATPase-V P-type AT 40.7 5.2E+02 0.011 33.0 15.5 35 593-627 398-432 (1054)
206 PF11491 DUF3213: Protein of u 39.8 50 0.0011 27.0 4.0 51 214-264 10-60 (88)
207 cd02071 MM_CoA_mut_B12_BD meth 39.3 58 0.0012 29.3 5.0 52 793-844 51-104 (122)
208 TIGR01675 plant-AP plant acid 39.2 65 0.0014 32.7 5.8 30 804-833 120-149 (229)
209 TIGR02250 FCP1_euk FCP1-like p 39.1 50 0.0011 31.3 4.7 44 800-844 54-97 (156)
210 PRK05550 bifunctional methioni 39.1 44 0.00096 34.9 4.7 50 214-263 134-202 (283)
211 cd04906 ACT_ThrD-I_1 First of 39.0 1.5E+02 0.0033 24.6 7.2 65 769-836 12-81 (85)
212 PF12689 Acid_PPase: Acid Phos 38.9 54 0.0012 31.5 5.0 41 804-844 45-86 (169)
213 PRK10503 multidrug efflux syst 38.7 3.3E+02 0.0072 34.7 13.2 119 143-262 73-219 (1040)
214 cd05017 SIS_PGI_PMI_1 The memb 38.6 59 0.0013 29.0 5.0 35 806-842 56-90 (119)
215 cd03421 SirA_like_N SirA_like_ 37.9 2E+02 0.0043 22.5 7.6 54 132-196 2-55 (67)
216 TIGR01533 lipo_e_P4 5'-nucleot 37.8 61 0.0013 33.8 5.5 42 803-844 117-161 (266)
217 PLN02811 hydrolase 37.6 41 0.0009 33.8 4.3 31 803-833 77-107 (220)
218 PLN02779 haloacid dehalogenase 37.3 55 0.0012 34.6 5.2 38 804-841 144-181 (286)
219 TIGR00915 2A0602 The (Largely 37.0 2.8E+02 0.006 35.4 12.2 119 143-262 62-209 (1044)
220 PRK14018 trifunctional thiored 36.6 50 0.0011 38.0 5.0 47 140-186 205-269 (521)
221 TIGR00213 GmhB_yaeD D,D-heptos 36.4 28 0.00061 33.6 2.7 26 805-830 27-52 (176)
222 PF03129 HGTP_anticodon: Antic 35.7 74 0.0016 26.8 4.9 48 797-844 3-54 (94)
223 PRK10503 multidrug efflux syst 35.7 1E+03 0.023 30.3 26.0 143 47-190 55-221 (1040)
224 TIGR00739 yajC preprotein tran 35.0 1.9E+02 0.0041 24.2 6.9 23 417-439 22-45 (84)
225 TIGR02370 pyl_corrinoid methyl 35.0 64 0.0014 32.0 5.0 66 778-844 107-188 (197)
226 cd04888 ACT_PheB-BS C-terminal 35.0 1.9E+02 0.0041 22.9 7.1 70 88-161 5-74 (76)
227 PF12710 HAD: haloacid dehalog 34.9 20 0.00043 35.0 1.4 13 650-662 1-13 (192)
228 cd00859 HisRS_anticodon HisRS 34.3 90 0.002 25.6 5.3 45 799-843 7-52 (91)
229 PF00763 THF_DHG_CYH: Tetrahyd 33.9 30 0.00065 31.0 2.2 41 803-843 10-59 (117)
230 PRK05446 imidazole glycerol-ph 33.6 52 0.0011 35.9 4.3 26 803-828 29-54 (354)
231 PF02680 DUF211: Uncharacteriz 32.9 94 0.002 26.4 4.7 68 128-196 5-77 (95)
232 cd04888 ACT_PheB-BS C-terminal 32.8 2.5E+02 0.0054 22.2 8.5 58 178-235 13-74 (76)
233 TIGR01647 ATPase-IIIA_H plasma 32.2 2.5E+02 0.0053 34.4 10.3 34 594-627 237-270 (755)
234 PF11491 DUF3213: Protein of u 31.6 69 0.0015 26.3 3.6 52 143-194 13-64 (88)
235 PRK10929 putative mechanosensi 31.5 8.2E+02 0.018 31.3 14.5 21 653-673 946-966 (1109)
236 PF02680 DUF211: Uncharacteriz 31.3 1.5E+02 0.0033 25.2 5.7 64 203-267 6-74 (95)
237 PRK02261 methylaspartate mutas 30.7 1.9E+02 0.0041 26.7 7.0 67 778-844 26-114 (137)
238 COG0637 Predicted phosphatase/ 30.6 77 0.0017 32.0 4.9 43 802-844 84-126 (221)
239 cd03423 SirA SirA (also known 30.4 2.7E+02 0.006 22.0 8.1 55 132-196 2-56 (69)
240 PLN03064 alpha,alpha-trehalose 30.3 1.2E+02 0.0027 37.5 7.2 72 771-842 578-661 (934)
241 COG4420 Predicted membrane pro 29.9 2.8E+02 0.006 27.0 7.9 47 542-588 39-86 (191)
242 PRK11018 hypothetical protein; 29.8 2.1E+02 0.0046 23.4 6.4 55 48-112 9-63 (78)
243 PRK09456 ?-D-glucose-1-phospha 29.8 73 0.0016 31.4 4.5 32 804-835 84-115 (199)
244 TIGR01494 ATPase_P-type ATPase 29.5 7.8E+02 0.017 28.3 13.6 144 450-626 56-213 (499)
245 PF03120 DNA_ligase_OB: NAD-de 29.5 25 0.00055 29.1 0.9 22 454-475 45-67 (82)
246 COG0474 MgtA Cation transport 29.4 4.9E+02 0.011 32.6 12.4 209 398-627 107-332 (917)
247 PF09874 DUF2101: Predicted me 29.2 3.9E+02 0.0084 26.3 8.8 11 458-468 181-191 (206)
248 TIGR01501 MthylAspMutase methy 28.9 2.3E+02 0.0051 26.0 7.1 52 793-844 53-112 (134)
249 cd03422 YedF YedF is a bacteri 28.8 3E+02 0.0064 21.8 7.9 55 132-196 2-56 (69)
250 PRK09545 znuA high-affinity zi 28.6 1.2E+02 0.0025 32.6 6.0 53 791-843 220-276 (311)
251 PLN02151 trehalose-phosphatase 28.2 1E+02 0.0022 33.6 5.3 58 781-839 95-154 (354)
252 PRK10553 assembly protein for 28.0 2.7E+02 0.006 23.4 6.8 42 143-186 19-60 (87)
253 cd01019 ZnuA Zinc binding prot 27.8 1.2E+02 0.0026 32.0 5.9 52 792-843 197-252 (286)
254 cd03420 SirA_RHOD_Pry_redox Si 26.5 1.7E+02 0.0037 23.2 5.2 53 50-112 2-54 (69)
255 PF09926 DUF2158: Uncharacteri 26.4 44 0.00096 25.1 1.6 11 460-470 2-12 (53)
256 TIGR01659 sex-lethal sex-letha 26.3 8.7E+02 0.019 26.4 13.7 122 47-173 107-243 (346)
257 COG4004 Uncharacterized protei 26.1 1.4E+02 0.003 25.1 4.5 47 177-246 12-58 (96)
258 cd02072 Glm_B12_BD B12 binding 26.0 2.4E+02 0.0052 25.7 6.6 53 792-844 50-110 (128)
259 PHA02669 hypothetical protein; 25.8 1.7E+02 0.0036 27.3 5.4 31 400-430 17-48 (210)
260 COG3981 Predicted acetyltransf 25.6 2.6E+02 0.0055 26.9 6.8 56 787-842 72-154 (174)
261 TIGR00914 2A0601 heavy metal e 25.6 1.5E+03 0.033 29.0 23.7 47 145-191 170-222 (1051)
262 cd00738 HGTP_anticodon HGTP an 25.4 1.4E+02 0.003 24.8 4.9 38 805-842 16-54 (94)
263 PLN02580 trehalose-phosphatase 25.1 1.6E+02 0.0035 32.5 6.3 63 776-839 111-175 (384)
264 PF09580 Spore_YhcN_YlaJ: Spor 24.8 1.5E+02 0.0032 28.6 5.5 46 142-187 76-123 (177)
265 COG1862 YajC Preprotein transl 24.7 3.5E+02 0.0075 23.4 6.9 29 412-440 23-51 (97)
266 PF06638 Strabismus: Strabismu 24.5 1.1E+03 0.023 26.9 13.2 22 426-447 221-242 (505)
267 PRK15348 type III secretion sy 24.3 6.6E+02 0.014 25.9 10.1 33 217-249 109-154 (249)
268 TIGR00489 aEF-1_beta translati 24.0 3.6E+02 0.0078 22.8 6.8 68 169-236 9-83 (88)
269 KOG1635 Peptide methionine sul 24.0 1.2E+02 0.0027 28.8 4.3 50 214-263 31-99 (191)
270 PF10173 Mit_KHE1: Mitochondri 23.8 1.9E+02 0.004 28.4 5.9 23 241-263 104-126 (187)
271 PRK09579 multidrug efflux prot 23.8 1.6E+03 0.034 28.6 17.3 139 59-197 575-737 (1017)
272 COG1832 Predicted CoA-binding 23.7 1.2E+02 0.0025 27.9 4.0 33 794-826 17-49 (140)
273 COG4669 EscJ Type III secretor 23.7 2.2E+02 0.0049 28.7 6.3 20 143-162 111-130 (246)
274 cd01137 PsaA Metal binding pro 23.4 1.7E+02 0.0038 30.8 6.1 53 792-844 195-251 (287)
275 cd02070 corrinoid_protein_B12- 23.3 1.3E+02 0.0028 29.9 4.8 65 779-844 106-186 (201)
276 PRK05585 yajC preprotein trans 23.2 4.7E+02 0.01 23.0 7.6 28 413-440 33-60 (106)
277 TIGR00914 2A0601 heavy metal e 23.1 1.7E+03 0.036 28.6 19.1 61 129-189 683-753 (1051)
278 cd02067 B12-binding B12 bindin 22.9 1.6E+02 0.0034 26.2 4.9 52 793-844 51-104 (119)
279 cd03420 SirA_RHOD_Pry_redox Si 22.8 3.9E+02 0.0084 21.1 8.1 56 132-197 2-57 (69)
280 TIGR02898 spore_YhcN_YlaJ spor 22.6 3.5E+02 0.0076 25.7 7.2 36 141-176 54-89 (158)
281 TIGR02329 propionate_PrpR prop 22.4 1.1E+02 0.0024 35.5 4.7 37 804-844 129-165 (526)
282 PF03927 NapD: NapD protein; 22.3 4.4E+02 0.0096 21.6 7.1 13 223-235 59-71 (79)
283 TIGR01116 ATPase-IIA1_Ca sarco 22.3 5.6E+02 0.012 32.2 11.1 216 403-627 45-273 (917)
284 cd00291 SirA_YedF_YeeD SirA, Y 22.2 3.8E+02 0.0082 20.8 8.1 55 132-196 2-56 (69)
285 cd05014 SIS_Kpsf KpsF-like pro 22.1 74 0.0016 28.6 2.7 28 806-833 60-87 (128)
286 PF12017 Tnp_P_element: Transp 21.8 1.2E+02 0.0027 30.8 4.4 36 809-844 198-233 (236)
287 cd01017 AdcA Metal binding pro 21.8 1.7E+02 0.0037 30.8 5.7 53 792-844 189-245 (282)
288 COG5012 Predicted cobalamin bi 21.7 81 0.0018 31.5 2.9 51 794-844 157-208 (227)
289 cd00861 ProRS_anticodon_short 21.6 1.3E+02 0.0028 25.2 3.9 24 808-831 42-65 (94)
290 cd04885 ACT_ThrD-I Tandem C-te 21.6 3.7E+02 0.0081 21.0 6.3 54 769-823 9-66 (68)
291 cd04614 CBS_pair_1 The CBS dom 20.8 3.9E+02 0.0084 22.3 6.8 56 772-827 12-78 (96)
292 COG0241 HisB Histidinol phosph 20.4 96 0.0021 30.2 3.1 24 805-828 32-55 (181)
293 PF08645 PNK3P: Polynucleotide 20.3 83 0.0018 29.9 2.7 22 807-828 32-53 (159)
294 TIGR00640 acid_CoA_mut_C methy 20.2 2E+02 0.0043 26.4 5.0 53 792-844 53-107 (132)
295 PLN03063 alpha,alpha-trehalose 20.2 2.2E+02 0.0047 35.1 6.8 70 771-840 494-569 (797)
296 PRK15385 magnesium transport p 20.2 4.9E+02 0.011 26.3 8.1 92 144-238 124-223 (225)
297 PF00122 E1-E2_ATPase: E1-E2 A 20.2 4.6E+02 0.0099 26.3 8.4 21 461-481 41-61 (230)
298 TIGR00676 fadh2 5,10-methylene 20.1 3E+02 0.0066 28.7 7.1 39 794-832 60-99 (272)
299 PRK11152 ilvM acetolactate syn 20.0 4.1E+02 0.0089 21.7 6.2 70 86-161 6-75 (76)
No 1
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-123 Score=1029.56 Aligned_cols=754 Identities=46% Similarity=0.735 Sum_probs=685.3
Q ss_pred CCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEECCCCCCHHHHHHHHHhcCcchhhhcccCCCCCCCCceeeecc
Q 003131 53 TGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQY 132 (845)
Q Consensus 53 ~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~~ 132 (845)
.||+|..|.+.+++++++.+|+.++.+++.++++.+.|+ ...+++.+.+.+++.||+++..+.+.... .+..+
T Consensus 1 ~gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~-~~~~~~~i~~~ied~gf~~~~~~~~~~~~------~~~~l 73 (951)
T KOG0207|consen 1 KGMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYD-NIVSPESIKETIEDMGFEASLLSDSEITA------SKCYL 73 (951)
T ss_pred CCccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEe-eccCHHHHHHHhhcccceeeecccCcccc------ceeEE
Confidence 499999999999999999999999999999999999999 78999999999999999998776544322 25689
Q ss_pred ccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccCC---cceeEEEEe
Q 003131 133 TIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSG---QDKILLQVT 209 (845)
Q Consensus 133 ~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~~~---~~~~~~~v~ 209 (845)
++.||+|++|+..+|+.+++.+|+.++.+.+..+.+.+.|||..++++.+.+.++++||.+....+.+ ..++.|.|.
T Consensus 74 ~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~~~~~~i~L~v~ 153 (951)
T KOG0207|consen 74 SVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNGNSNQKIYLDVL 153 (951)
T ss_pred EecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccCCCCCcEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999876542 258899999
Q ss_pred cccchhhhHHHHhhhccCCCceEEEeecCCCeEEEEeCCCCCChhhHHHhhhhcCCCcceEeecCccccc---cccchHH
Q 003131 210 GVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMNPFARM---TSRDSEE 286 (845)
Q Consensus 210 gm~c~~c~~~ie~~l~~~~gV~~~~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~---~~~~~~~ 286 (845)
||.|++|+..+|+.+.+++||.+++++..++++.|.|||..++++++.+.++..+ |.+......... ..+...+
T Consensus 154 g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~---~~~~~~~~~~~~~~~~l~~~~e 230 (951)
T KOG0207|consen 154 GMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETG---FEASVRPYGDTTFKNSLKHKEE 230 (951)
T ss_pred cccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhc---ccceeeeccccchhhhhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999998 665543322111 2234556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHhhhccCCCchHHHHHHHHHHHhhhccChHHHHHHHHHHHcCCCCch
Q 003131 287 TSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRNGSTNMD 366 (845)
Q Consensus 287 ~~~~~~~~~~a~ilal~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~a~~~l~~~~~~md 366 (845)
.+.|++.|..+..+++|++++.+..++..+....+.....++.+..++.++|++|++|..||+||..||++|+++..|||
T Consensus 231 i~~w~~~fl~s~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~vqf~~G~~fy~~A~ksL~~g~~nMd 310 (951)
T KOG0207|consen 231 IRKWKRPFLISLGFSLPVSFAMIICPPLAWILALLVPFLPGLSYGNSLSFVLATPVQFVGGRPFYLAAYKSLKRGSANMD 310 (951)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhccchhhhhhhccccccchhhhHHHhhhheeeEEecceeeHHHHHHHHhcCCCCce
Confidence 78999999999999999988887776644422222222456778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCC
Q 003131 367 VLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVG 446 (845)
Q Consensus 367 ~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g 446 (845)
+|+.+++.++|+||++.++...... .+.+||+++.|++.|+++|+|+|.+++.|+..++.+|.++.|..+.++ .+|
T Consensus 311 vLv~L~t~aay~~S~~~~~~~~~~~-~~~tfFdt~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii---~~g 386 (951)
T KOG0207|consen 311 VLVVLGTTAAYFYSIFSLLAAVVFD-SPPTFFDTSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPSKATII---EDG 386 (951)
T ss_pred eehhhHHHHHHHHHHHHHHHHHHcc-CcchhccccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcccceEe---ecC
Confidence 9999999999999999988776663 378999999999999999999999999999999999999999999998 666
Q ss_pred ceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEecceeeeccccCCcceeeeccCCCceeccceeecceEEEEEEEecC
Q 003131 447 KCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGS 526 (845)
Q Consensus 447 ~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~G~~~Vdes~LTGEs~pv~k~~~~~v~aGt~~~~g~~~~~v~~~g~ 526 (845)
. .+++|+++.|++||+|.|+||++||+||+|++|++.||||++|||++|+.|++|+.|.+||+|.+|.+.++++++|.
T Consensus 387 ~--~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss~VDEs~iTGEs~PV~Kk~gs~ViaGsiN~nG~l~VkaT~~g~ 464 (951)
T KOG0207|consen 387 S--EEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSSEVDESLITGESMPVPKKKGSTVIAGSINLNGTLLVKATKVGG 464 (951)
T ss_pred C--cceEeeeeeeccCCEEEECCCCccccccEEEeCceeechhhccCCceecccCCCCeeeeeeecCCceEEEEEEeccc
Confidence 2 27899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc-CCCCCCcCCCCCchHHHHHHHHhhhh
Q 003131 527 DAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVL-GAYPEQWLPENGTHFVFALMFSISVV 605 (845)
Q Consensus 527 ~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~vl 605 (845)
||.+++|+++++++|.+|+|+|+++|+++.||+|.++++++++|++|.+.+.+ ..++..|. ..+..+|..+++++
T Consensus 465 dttla~IvkLVEEAQ~sKapiQq~aDkia~yFvP~Vi~lS~~t~~~w~~~g~~~~~~~~~~~----~~~~~a~~~aisVl 540 (951)
T KOG0207|consen 465 DTTLAQIVKLVEEAQLSKAPIQQLADKIAGYFVPVVIVLSLATFVVWILIGKIVFKYPRSFF----DAFSHAFQLAISVL 540 (951)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHHHhhhcCCchhhHHHHHHHHHHHHHccccccCcchhh----HHHHHHHHhhheEE
Confidence 99999999999999999999999999999999999999999999999998763 33444443 67889999999999
Q ss_pred eeecccccchhhHHHHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccC-CChhhHHHHHh
Q 003131 606 VIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-MDRGEFLTLVA 684 (845)
Q Consensus 606 v~~~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~-~~~~~~~~~~~ 684 (845)
+++|||+|+||+|++.+.+++.++++|+++|+++.+|.+.++++++||||||||+|++.|.++..+.+ ++..+++.+++
T Consensus 541 viACPCaLgLATPtAvmvatgvgA~nGvLIKGge~LE~~hkv~tVvFDKTGTLT~G~~~V~~~~~~~~~~~~~e~l~~v~ 620 (951)
T KOG0207|consen 541 VIACPCALGLATPTAVMVATGVGATNGVLIKGGEALEKAHKVKTVVFDKTGTLTEGKPTVVDFKSLSNPISLKEALALVA 620 (951)
T ss_pred EEECchhhhcCCceEEEEEechhhhcceEEcCcHHHHHHhcCCEEEEcCCCceecceEEEEEEEecCCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999877 67899999999
Q ss_pred hhhccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccccccccCCCc--eEEEEcCeEEEEeehhhhh
Q 003131 685 SAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRG--IQCFISGKQVLVGNRKLLN 762 (845)
Q Consensus 685 ~~~~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g--i~~~~~g~~~~~g~~~~~~ 762 (845)
+.|..+.||+++|+++|++.... ......+..|++.+|+| +.+.++|.++.+||++|+.
T Consensus 621 a~Es~SeHPig~AIv~yak~~~~-------------------~~~~~~~~~~~~~pg~g~~~~~~~~~~~i~iGN~~~~~ 681 (951)
T KOG0207|consen 621 AMESGSEHPIGKAIVDYAKEKLV-------------------EPNPEGVLSFEYFPGEGIYVTVTVDGNEVLIGNKEWMS 681 (951)
T ss_pred HHhcCCcCchHHHHHHHHHhccc-------------------ccCccccceeecccCCCcccceEEeeeEEeechHHHHH
Confidence 99999999999999999988731 01123455788888888 6788899999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHccCeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcC
Q 003131 763 ESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVC 842 (845)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~g~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~G 842 (845)
+++...+++.++.+++.+..|+++++++.|+++.|++.++|++|||+..+|+.||++||++.||||||..||+++|+++|
T Consensus 682 r~~~~~~~~i~~~~~~~e~~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VG 761 (951)
T KOG0207|consen 682 RNGCSIPDDILDALTESERKGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVG 761 (951)
T ss_pred hcCCCCchhHHHhhhhHhhcCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 003131 843 VID 845 (845)
Q Consensus 843 I~~ 845 (845)
|++
T Consensus 762 i~~ 764 (951)
T KOG0207|consen 762 IDN 764 (951)
T ss_pred cce
Confidence 864
No 2
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.9e-104 Score=897.69 Aligned_cols=575 Identities=43% Similarity=0.678 Sum_probs=515.5
Q ss_pred ceeEEEEecccchhhhHHHHhhhccCCCceEEEeecCCCeEEEEeCCCCCC-hhhHHHhhhhcCCCcceEeecCccc-cc
Q 003131 202 DKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALS-SRSLVDGIAGRSNGKFQIRVMNPFA-RM 279 (845)
Q Consensus 202 ~~~~~~v~gm~c~~c~~~ie~~l~~~~gV~~~~v~~~~~~~~V~~d~~~~~-~~~i~~~i~~~g~~~~~~~~~~~~~-~~ 279 (845)
.+..+.++||+|++|+.++| .+++.+||.++++|+.++++.+.||+...+ .+++.+.++..| |......... ..
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~g---y~~~~~~~~~~~~ 77 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAG---YSARLTAALADPA 77 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcC---ccccccccccchh
Confidence 35678999999999999999 999999999999999999999999998777 799999999999 7554311000 00
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHhhhccCCCchHHHHHHHHHHHhhhccChHHHHHHHHHHH
Q 003131 280 TSRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALR 359 (845)
Q Consensus 280 ~~~~~~~~~~~~~~~~~a~ilal~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~a~~~l~ 359 (845)
..+.... ...+++++.+.++.++.++..+.... ...+..|+++++++|++||.|+|||+.+|+.++
T Consensus 78 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~v~~~~g~~f~~~a~~~l~ 143 (713)
T COG2217 78 EAEARLL-RELLRRLIIAGLLTLPLLLLSLGLLL-------------GAFLLPWVSFLLATPVLFYGGWPFYRGAWRALR 143 (713)
T ss_pred hhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhc-------------chhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 0011011 33455566666776666554332211 013567899999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEE
Q 003131 360 NGSTNMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALL 439 (845)
Q Consensus 360 ~~~~~md~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v 439 (845)
++.+|||+|+++|+..||+||.+.++.. .||++++++++|+++|+++|.+++.|+++++++|.++.|+++++
T Consensus 144 ~~~~~md~Lv~la~~~A~~~s~~~~~~~--------~yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~ 215 (713)
T COG2217 144 RGRLNMDTLVALATIGAYAYSLYATLFP--------VYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATV 215 (713)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 9999999999999999999999988863 89999999999999999999999999999999999999999988
Q ss_pred EEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEecceeeeccccCCcceeeeccCCCceeccceeecceEEE
Q 003131 440 VVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHI 519 (845)
Q Consensus 440 ~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~G~~~Vdes~LTGEs~pv~k~~~~~v~aGt~~~~g~~~~ 519 (845)
+. +|| ++++||+++|++||+|.|+|||+||+||+|++|++.||||+|||||.|+.|++||.|++||+|.+|.+++
T Consensus 216 ~~--~~~---~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s~vDeS~iTGEs~PV~k~~Gd~V~aGtiN~~G~l~i 290 (713)
T COG2217 216 VR--GDG---EEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSSSVDESMLTGESLPVEKKPGDEVFAGTVNLDGSLTI 290 (713)
T ss_pred Ee--cCC---cEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcEEeecchhhCCCCCEecCCCCEEeeeEEECCccEEE
Confidence 74 355 3789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHH
Q 003131 520 QATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALM 599 (845)
Q Consensus 520 ~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (845)
+|+++|.+|++++|++++++++.+|+|+|+++|+++.+|+|.++++++++|++|++.+. .+|..+++
T Consensus 291 ~vt~~~~dt~la~Ii~LVe~Aq~~Ka~iqrlaDr~a~~fvp~vl~ia~l~f~~w~~~~~-------------~~~~~a~~ 357 (713)
T COG2217 291 RVTRVGADTTLARIIRLVEEAQSSKAPIQRLADRVASYFVPVVLVIAALTFALWPLFGG-------------GDWETALY 357 (713)
T ss_pred EEEecCccCHHHHHHHHHHHHhhCCchHHHHHHHHHHccHHHHHHHHHHHHHHHHHhcC-------------CcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887641 35778999
Q ss_pred HHhhhheeecccccchhhHHHHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCCChhhH
Q 003131 600 FSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEF 679 (845)
Q Consensus 600 ~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~ 679 (845)
+++++|+++|||+|++++|+++..++++++|+||++|+++++|+++++|+++||||||||+|+|.|+++...++ +++++
T Consensus 358 ~a~avLVIaCPCALgLAtP~ai~~g~g~aA~~GILiK~g~~LE~l~~v~tvvFDKTGTLT~G~p~v~~v~~~~~-~e~~~ 436 (713)
T COG2217 358 RALAVLVIACPCALGLATPTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDVVALDG-DEDEL 436 (713)
T ss_pred HHHhheeeeCccHHHhHHHHHHHHHHHHHHhCceEEeChHHHHhhccCCEEEEeCCCCCcCCceEEEEEecCCC-CHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877 88999
Q ss_pred HHHHhhhhccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccccccccCCCceEEEEcCeEEEEeehh
Q 003131 680 LTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRK 759 (845)
Q Consensus 680 ~~~~~~~~~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~g~~~~~g~~~ 759 (845)
+++++++|..|+||+++||++++...+ ...+.+|++++|+|+++.++|..+.+|+++
T Consensus 437 L~laAalE~~S~HPiA~AIv~~a~~~~-----------------------~~~~~~~~~i~G~Gv~~~v~g~~v~vG~~~ 493 (713)
T COG2217 437 LALAAALEQHSEHPLAKAIVKAAAERG-----------------------LPDVEDFEEIPGRGVEAEVDGERVLVGNAR 493 (713)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHhcC-----------------------CCCccceeeeccCcEEEEECCEEEEEcCHH
Confidence 999999999999999999999887762 134455899999999999999999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHccCeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH
Q 003131 760 LLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR 839 (845)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~ 839 (845)
++.+++.+.+. ..+..+.++.+|.++++++.|++++|+++++|++|+|++++|++||+.|++++||||||+.+|.+||+
T Consensus 494 ~~~~~~~~~~~-~~~~~~~~~~~G~t~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~ 572 (713)
T COG2217 494 LLGEEGIDLPL-LSERIEALESEGKTVVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAK 572 (713)
T ss_pred HHhhcCCCccc-hhhhHHHHHhcCCeEEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Confidence 99998877765 56667788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCC
Q 003131 840 EVCVID 845 (845)
Q Consensus 840 ~~GI~~ 845 (845)
++||++
T Consensus 573 ~lGId~ 578 (713)
T COG2217 573 ELGIDE 578 (713)
T ss_pred HcChHh
Confidence 999974
No 3
>PRK10671 copA copper exporting ATPase; Provisional
Probab=100.00 E-value=3.7e-94 Score=864.63 Aligned_cols=654 Identities=33% Similarity=0.523 Sum_probs=552.6
Q ss_pred eeccccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccC---------
Q 003131 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSS--------- 199 (845)
Q Consensus 129 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~~--------- 199 (845)
+.++.|+||+|++|+.+|++++++++||.++.+++. +..++.. .+.+.+.+.++++||++....+.
T Consensus 4 ~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~---~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~ 78 (834)
T PRK10671 4 TIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT---ASAEALIETIKQAGYDASVSHPKAKPLTESSI 78 (834)
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec---CCHHHHHHHHHhcCCccccccccccccccccc
Confidence 468999999999999999999999999999999994 4555542 47889999999999998763210
Q ss_pred ------------------CcceeEEEEecccchhhhHHHHhhhccCCCceEEEeecCCCeEEEEeCCCCCChhhHHHhhh
Q 003131 200 ------------------GQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIA 261 (845)
Q Consensus 200 ------------------~~~~~~~~v~gm~c~~c~~~ie~~l~~~~gV~~~~v~~~~~~~~V~~d~~~~~~~~i~~~i~ 261 (845)
...+..+.+.||+|+.|+..+++.+...+||.++.+++.+++..+.+ ..+.+++.+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~~s~~~I~~~I~ 155 (834)
T PRK10671 79 PSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---SASPQDLVQAVE 155 (834)
T ss_pred CchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---cCCHHHHHHHHH
Confidence 01245688999999999999999999999999999999999988874 245677878888
Q ss_pred hcCCCcceEeecCccc-cccccc---hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHhhhccCCCchHHHHH-H
Q 003131 262 GRSNGKFQIRVMNPFA-RMTSRD---SEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLN-W 336 (845)
Q Consensus 262 ~~g~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~a~ilal~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 336 (845)
+.| |.....+... ...... ..+.+++.++++.+++++++++++.+.... +. + .+.....|+. +
T Consensus 156 ~~G---y~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~----~~~~~~~~~~~~ 223 (834)
T PRK10671 156 KAG---YGAEAIEDDAKRRERQQETAQATMKRFRWQAIVALAVGIPVMVWGMIGDN---MM--V----TADNRSLWLVIG 223 (834)
T ss_pred hcC---CCccccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cc--c----CccchhHHHHHH
Confidence 887 5443221110 000000 112233444555566666655544331000 00 0 0001123553 5
Q ss_pred HHHHHhhhccChHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHhhhhc-CCCCcchhhhHHHHHHHHHHHHHHH
Q 003131 337 ALVSVVQFVIGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVT-GFWSPTYFETSAMLITFVLFGKYLE 415 (845)
Q Consensus 337 ~l~~~~~~~~g~~~~~~a~~~l~~~~~~md~L~~l~~~~a~~~s~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~l~ 415 (845)
++++|++||+|+|||++||++|+++++|||+|+++|++++|+||++.++..... ....+.||++++++++|+++|+++|
T Consensus 224 ~~~~~~~~~~g~~~~~~a~~~l~~~~~~md~l~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le 303 (834)
T PRK10671 224 LITLAVMVFAGGHFYRSAWKSLLNGSATMDTLVALGTGAAWLYSMSVNLWPQWFPMEARHLYYEASAMIIGLINLGHMLE 303 (834)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999876642111 1122569999999999999999999
Q ss_pred HHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEecceeeeccccCCcc
Q 003131 416 ILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEA 495 (845)
Q Consensus 416 ~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~G~~~Vdes~LTGEs 495 (845)
.+++.|+++.+++|.++.|++++++ |+| .+++|++++|+|||+|.|++||+||+||+|++|++.||||+|||||
T Consensus 304 ~~~~~~~~~~~~~L~~l~p~~a~~~---~~~---~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~~~vdeS~lTGEs 377 (834)
T PRK10671 304 ARARQRSSKALEKLLDLTPPTARVV---TDE---GEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEP 377 (834)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEE---eCC---cEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEceEEEeehhhcCCC
Confidence 9999999999999999999999998 777 5689999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 003131 496 VPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYV 575 (845)
Q Consensus 496 ~pv~k~~~~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~ 575 (845)
.|+.|++||.||+||+|.+|.++++|+++|.+|.+++|.+++++++.+|+|+|+.+|+++++|+|++++++++++++|++
T Consensus 378 ~pv~k~~gd~V~aGt~~~~G~~~~~v~~~g~~t~l~~i~~lv~~a~~~k~~~~~~~d~~a~~~v~~v~~~a~~~~~~~~~ 457 (834)
T PRK10671 378 IPQQKGEGDSVHAGTVVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYF 457 (834)
T ss_pred CCEecCCCCEEEecceecceeEEEEEEEEcCcChHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCC
Q 003131 576 AGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKT 655 (845)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKT 655 (845)
.+. ...|..++.+++++++++|||+|++++|+++..++.+++|+||++|+++++|+++++|++|||||
T Consensus 458 ~~~------------~~~~~~~~~~a~~vlv~acPcaL~la~p~a~~~~~~~~a~~gilvk~~~~le~l~~v~~v~fDKT 525 (834)
T PRK10671 458 FGP------------APQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQRASTLDTLVFDKT 525 (834)
T ss_pred hCC------------chHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHCCeEEecHHHHHhhcCCCEEEEcCC
Confidence 431 12356688899999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCeEEEEEEeccCCChhhHHHHHhhhhccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCCCcccccccc
Q 003131 656 GTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSD 735 (845)
Q Consensus 656 GTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (845)
||||+|+|+|.++...++.++.+++.+++++|..++||+++||++++.... ...+.+
T Consensus 526 GTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hp~a~Ai~~~~~~~~-----------------------~~~~~~ 582 (834)
T PRK10671 526 GTLTEGKPQVVAVKTFNGVDEAQALRLAAALEQGSSHPLARAILDKAGDMT-----------------------LPQVNG 582 (834)
T ss_pred CccccCceEEEEEEccCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCC-----------------------CCCccc
Confidence 999999999999988877788889999999999999999999998875321 123457
Q ss_pred ccccCCCceEEEEcCeEEEEeehhhhhhcCCCCChhhHHHHHHHHHccCeEEEEEECCeEEEEEEeeCCCChhHHHHHHH
Q 003131 736 FSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEG 815 (845)
Q Consensus 736 ~~~~~g~gi~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~ 815 (845)
+++++|+|+.++++|..+.+|+++++.+.+... +.+.+..++++++|.+++++++|+.++|++.+.|++||+++++|++
T Consensus 583 ~~~~~g~Gv~~~~~g~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~ 661 (834)
T PRK10671 583 FRTLRGLGVSGEAEGHALLLGNQALLNEQQVDT-KALEAEITAQASQGATPVLLAVDGKAAALLAIRDPLRSDSVAALQR 661 (834)
T ss_pred ceEecceEEEEEECCEEEEEeCHHHHHHcCCCh-HHHHHHHHHHHhCCCeEEEEEECCEEEEEEEccCcchhhHHHHHHH
Confidence 888999999999999999999999998766543 3355566777889999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 816 LLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 816 L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
|++.|++++|+|||+..+|.++|+++||+
T Consensus 662 L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~ 690 (834)
T PRK10671 662 LHKAGYRLVMLTGDNPTTANAIAKEAGID 690 (834)
T ss_pred HHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 99999999999999999999999999996
No 4
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=100.00 E-value=3.5e-85 Score=770.09 Aligned_cols=556 Identities=27% Similarity=0.407 Sum_probs=473.0
Q ss_pred cceeEEEEecccchhhhHHHHhhhccCCCceEEEeecCCCeEEEEeCCCCCChhhHHHhhhhcCCCcceEeecCcccccc
Q 003131 201 QDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRSNGKFQIRVMNPFARMT 280 (845)
Q Consensus 201 ~~~~~~~v~gm~c~~c~~~ie~~l~~~~gV~~~~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~~ 280 (845)
..+.++.+.||+|.+|+..+++.+...+||.++++++.+++..+.|++.. . +++.+.+++.| |+....+...
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~G---y~a~~~~~~~--- 123 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAG---FSLRDEQAAA--- 123 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhcc---cccccccchh---
Confidence 45677889999999999999999999999999999999999999998863 2 66777778777 6543221110
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHhhhccCCCchHHHHHHHHHHHhhhccChHHHHHHHHHHHc
Q 003131 281 SRDSEETSNMFRLFISSLFLSIPVFFIRVICPHIPLVYALLLWRCGPFLMGDWLNWALVSVVQFVIGKRFYTAAGRALRN 360 (845)
Q Consensus 281 ~~~~~~~~~~~~~~~~a~ilal~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~a~~~l~~ 360 (845)
...+...++ ..... ++...+|++++.+.. + . +...|+.++++ .+|+|+|||++||+++++
T Consensus 124 --~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~-------~----~--~~~~~~~~~~~---~~~~~~~~~~~a~~~l~~ 183 (741)
T PRK11033 124 --AAPESRLKS-ENLPL-ITLAVMMAISWGLEQ-------F----N--HPFGQLAFIAT---TLVGLYPIARKALRLIRS 183 (741)
T ss_pred --hhHHHHHHH-HHHHH-HHHHHHHHHHHHHhh-------h----h--hHHHHHHHHHH---HHHHHHHHHHHHHHHHHc
Confidence 011111111 11111 111222222221110 0 0 11124444443 367899999999999999
Q ss_pred CCC-CchHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEE
Q 003131 361 GST-NMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALL 439 (845)
Q Consensus 361 ~~~-~md~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v 439 (845)
+++ |||+|+++++.++++++ .| +.++++++++++|+++|.+++.|+++.+++|.++.|.++++
T Consensus 184 ~~~~~~~~L~~~a~~~a~~~~---------------~~-~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~v 247 (741)
T PRK11033 184 GSPFAIETLMSVAAIGALFIG---------------AT-AEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETATR 247 (741)
T ss_pred CCCCCccHHHHHHHHHHHHHc---------------ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 885 99999999999887764 23 45788899999999999999999999999999999999999
Q ss_pred EEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEecceeeeccccCCcceeeeccCCCceeccceeecceEEE
Q 003131 440 VVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHI 519 (845)
Q Consensus 440 ~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~G~~~Vdes~LTGEs~pv~k~~~~~v~aGt~~~~g~~~~ 519 (845)
+ ||| ++++|++++|+|||+|.|++||+||+||+|++|++.||||+|||||.|+.|++|+.||+||++.+|.+++
T Consensus 248 i---r~g---~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~~vdes~lTGEs~Pv~k~~Gd~V~aGt~~~~G~~~i 321 (741)
T PRK11033 248 L---RDG---EREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFASFDESALTGESIPVERATGEKVPAGATSVDRLVTL 321 (741)
T ss_pred E---ECC---EEEEEEHHHCCCCCEEEECCCCEEecceEEEECcEEeecccccCCCCCEecCCCCeeccCCEEcCceEEE
Confidence 8 788 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHH
Q 003131 520 QATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALM 599 (845)
Q Consensus 520 ~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (845)
+|+++|.+|.++||.+++++++.+++|+|+.+|+++++|+|+++++++++|++|.+.. ..+|..++.
T Consensus 322 ~V~~~g~~s~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~~~~v~~~a~~~~~~~~~~~-------------~~~~~~~i~ 388 (741)
T PRK11033 322 EVLSEPGASAIDRILHLIEEAEERRAPIERFIDRFSRIYTPAIMLVALLVILVPPLLF-------------AAPWQEWIY 388 (741)
T ss_pred EEEeccccCHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------cCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999885532 124667888
Q ss_pred HHhhhheeecccccchhhHHHHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCCChhhH
Q 003131 600 FSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEF 679 (845)
Q Consensus 600 ~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~ 679 (845)
+++++++++|||+|++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|+|.+++.+++.+++++
T Consensus 389 ~a~svlviacPcaL~latP~a~~~~l~~aar~gilik~~~alE~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~~~~ 468 (741)
T PRK11033 389 RGLTLLLIGCPCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPATGISESEL 468 (741)
T ss_pred HHHHHHHHhchhhhhhhhHHHHHHHHHHHHHCCeEEcCcHHHHHhhCCCEEEEeCCCCCcCCceEEEEEEecCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877788899
Q ss_pred HHHHhhhhccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccccccccCCCceEEEEcCeEEEEeehh
Q 003131 680 LTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRK 759 (845)
Q Consensus 680 ~~~~~~~~~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~g~~~~~g~~~ 759 (845)
+.+++++|..+.||+++||+++++..+. .++...+++..+|.|+.+.++|..+.+|+++
T Consensus 469 l~~aa~~e~~s~hPia~Ai~~~a~~~~~---------------------~~~~~~~~~~~~g~Gv~~~~~g~~~~ig~~~ 527 (741)
T PRK11033 469 LALAAAVEQGSTHPLAQAIVREAQVRGL---------------------AIPEAESQRALAGSGIEGQVNGERVLICAPG 527 (741)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhcCC---------------------CCCCCcceEEEeeEEEEEEECCEEEEEecch
Confidence 9999999999999999999999876521 1233456778889999999999999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHccCeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH
Q 003131 760 LLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR 839 (845)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~ 839 (845)
++.+ .++++.+..++++.+|++++++++|++++|+++|+|++|+|++++|++||++|++++|+|||++.+|.++|+
T Consensus 528 ~~~~----~~~~~~~~~~~~~~~g~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~ 603 (741)
T PRK11033 528 KLPP----LADAFAGQINELESAGKTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAG 603 (741)
T ss_pred hhhh----ccHHHHHHHHHHHhCCCEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 8865 234455556778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCC
Q 003131 840 EVCVI 844 (845)
Q Consensus 840 ~~GI~ 844 (845)
++||+
T Consensus 604 ~lgi~ 608 (741)
T PRK11033 604 ELGID 608 (741)
T ss_pred HcCCC
Confidence 99985
No 5
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=100.00 E-value=7.6e-79 Score=698.15 Aligned_cols=444 Identities=53% Similarity=0.834 Sum_probs=408.3
Q ss_pred cChHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHhhhhc-CCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 003131 346 IGKRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVT-GFWSPTYFETSAMLITFVLFGKYLEILAKGKTSD 424 (845)
Q Consensus 346 ~g~~~~~~a~~~l~~~~~~md~L~~l~~~~a~~~s~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~k~~~ 424 (845)
+|+|||++||++++++++|||+|++++++++|+||++.++.+... +...+.||++++++++++++|+++|.++++|+++
T Consensus 1 ~g~~~~~~a~~~l~~~~~~md~l~~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~le~~~~~~a~~ 80 (562)
T TIGR01511 1 AGRPFYKSAWKALRHKAPNMDTLIALGTTVAYGYSLVALLANQVLTGLHVHTFFDASAMLITFILLGRWLEMLAKGRASD 80 (562)
T ss_pred CcHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999988864322 1223579999999999999999999999999999
Q ss_pred HHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEecceeeeccccCCcceeeeccCCC
Q 003131 425 AIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINS 504 (845)
Q Consensus 425 ~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~G~~~Vdes~LTGEs~pv~k~~~~ 504 (845)
.+++|.++.|.++++++ ++| .+++|++++|+|||+|.|++||+|||||+|++|++.||||+|||||.|+.|++||
T Consensus 81 ~~~~L~~~~p~~a~~~~--~~~---~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~~vdes~lTGEs~pv~k~~gd 155 (562)
T TIGR01511 81 ALSKLAKLQPSTATLLT--KDG---SIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGESEVDESLVTGESLPVPKKVGD 155 (562)
T ss_pred HHHHHHhcCCCEEEEEE--CCC---eEEEEEHHHCCCCCEEEECCCCEecCceEEEECceEEehHhhcCCCCcEEcCCCC
Confidence 99999999999999983 245 5689999999999999999999999999999999999999999999999999999
Q ss_pred ceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 003131 505 PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPE 584 (845)
Q Consensus 505 ~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~ 584 (845)
.||+||++.+|.++++|+++|.+|.++++.+++++++.+|+|+++++|+++++|+|++++++++++++|.
T Consensus 156 ~V~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~v~~a~~~k~~~~~~~d~~a~~~~~~v~~~a~~~~~~~~---------- 225 (562)
T TIGR01511 156 PVIAGTVNGTGSLVVRATATGEDTTLAQIVRLVRQAQQSKAPIQRLADKVAGYFVPVVIAIALITFVIWL---------- 225 (562)
T ss_pred EEEeeeEECCceEEEEEEEecCCChHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 9999999999999999999999999999999999999999999999999999999999999998888763
Q ss_pred CcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeE
Q 003131 585 QWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRAT 664 (845)
Q Consensus 585 ~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~ 664 (845)
.++.+++++++++|||+|++++|+++..++.+++++||++|+++++|+|+++|++|||||||||+|+|+
T Consensus 226 -----------~~~~~~~svlvvacPcaL~la~p~a~~~~~~~aa~~gIlik~~~~lE~l~~v~~i~fDKTGTLT~g~~~ 294 (562)
T TIGR01511 226 -----------FALEFAVTVLIIACPCALGLATPTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPT 294 (562)
T ss_pred -----------HHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHCCeEEcChHHHHHhhCCCEEEECCCCCCcCCCEE
Confidence 256789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCChhhHHHHHhhhhccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccccccccCCCce
Q 003131 665 VTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGI 744 (845)
Q Consensus 665 v~~~~~~~~~~~~~~~~~~~~~~~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi 744 (845)
+.++...++.++++++.+++++|..++||+++|++++++..+. ....+.++++.+|+|+
T Consensus 295 v~~i~~~~~~~~~~~l~~aa~~e~~s~HPia~Ai~~~~~~~~~---------------------~~~~~~~~~~~~g~Gi 353 (562)
T TIGR01511 295 VTDVHVFGDRDRTELLALAAALEAGSEHPLAKAIVSYAKEKGI---------------------TLVEVSDFKAIPGIGV 353 (562)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhccCCChHHHHHHHHHHhcCC---------------------CcCCCCCeEEECCceE
Confidence 9999888777788999999999999999999999999876521 1123456778899999
Q ss_pred EEEEcCeEEEEeehhhhhhcCCCCChhhHHHHHHHHHccCeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEE
Q 003131 745 QCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPV 824 (845)
Q Consensus 745 ~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~ 824 (845)
.+.++|.++.+|+++++.+.+..+++ ..++|.++++++.|++++|++.++|++||+++++|++||+.|++++
T Consensus 354 ~~~~~g~~~~iG~~~~~~~~~~~~~~--------~~~~g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ 425 (562)
T TIGR01511 354 EGTVEGTKIQLGNEKLLGENAIKIDG--------KAEQGSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPV 425 (562)
T ss_pred EEEECCEEEEEECHHHHHhCCCCCCh--------hhhCCCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEE
Confidence 99999999999999999877655432 3467999999999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHcCCC
Q 003131 825 MVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 825 mlTGD~~~tA~~iA~~~GI~ 844 (845)
|+|||+..++.++++++||+
T Consensus 426 ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 426 MLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred EEcCCCHHHHHHHHHHcCCc
Confidence 99999999999999999984
No 6
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=100.00 E-value=5.9e-68 Score=610.78 Aligned_cols=419 Identities=44% Similarity=0.693 Sum_probs=379.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecC
Q 003131 365 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK 444 (845)
Q Consensus 365 md~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r 444 (845)
||+|++++++.+|++|. | ..+++++++++++++++.++++|+++.+++|.++.|..++++ |
T Consensus 1 ~d~l~~~~~~~~~~~~~---------------~-~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~---r 61 (556)
T TIGR01525 1 MDLLMALATIAAYAMGL---------------V-LEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVL---Q 61 (556)
T ss_pred CcHHHHHHHHHHHHHHH---------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE---E
Confidence 89999999999998872 2 357788999999999999999999999999999999999999 6
Q ss_pred C-CceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEecceeeeccccCCcceeeeccCCCceeccceeecceEEEEEEE
Q 003131 445 V-GKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATK 523 (845)
Q Consensus 445 ~-g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~G~~~Vdes~LTGEs~pv~k~~~~~v~aGt~~~~g~~~~~v~~ 523 (845)
+ | ++++|++++|+|||+|.|++||+|||||+|++|++.||||+|||||.|+.|++|+.||+||.+.+|.++++|++
T Consensus 62 ~~g---~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~g~~~~~v~~ 138 (556)
T TIGR01525 62 GDG---SEEEVPVEELQVGDIVIVRPGERIPVDGVVISGESEVDESALTGESMPVEKKEGDEVFAGTINGDGSLTIRVTK 138 (556)
T ss_pred CCC---eEEEEEHHHCCCCCEEEECCCCEeccceEEEecceEEeehhccCCCCCEecCCcCEEeeceEECCceEEEEEEE
Confidence 6 4 56889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhh
Q 003131 524 VGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSIS 603 (845)
Q Consensus 524 ~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 603 (845)
+|.+|++|++.+++++++.+++|+++.+++++.+|+++++++++++|++|++... + .++.++++
T Consensus 139 ~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~a~~~~~~~~~~~~---------------~-~~~~~~~~ 202 (556)
T TIGR01525 139 LGEDSTLAQIVKLVEEAQSSKAPIQRLADRIASYYVPAVLAIALLTFVVWLALGA---------------L-GALYRALA 202 (556)
T ss_pred ecccCHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------c-hHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998876431 1 67889999
Q ss_pred hheeecccccchhhHHHHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCCC--hhhHHH
Q 003131 604 VVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD--RGEFLT 681 (845)
Q Consensus 604 vlv~~~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~--~~~~~~ 681 (845)
+++++|||+|++++|+++..++.+++++|+++|+++++|.++++|++|||||||||+|+|+|.+++..++.+ .++++.
T Consensus 203 vlv~~~P~al~l~~~~~~~~~~~~~~~~gilvk~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~l~ 282 (556)
T TIGR01525 203 VLVVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVDVEPLDDASISEEELLA 282 (556)
T ss_pred HHhhccccchhehhHHHHHHHHHHHHHCCceecCchHHHHhhcCCEEEEeCCCCCcCCceEEEEEEecCCCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998876654 678899
Q ss_pred HHhhhhccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccc-cccccCCCceEEEEcC-eEEEEeehh
Q 003131 682 LVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVS-DFSALPGRGIQCFISG-KQVLVGNRK 759 (845)
Q Consensus 682 ~~~~~~~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~gi~~~~~g-~~~~~g~~~ 759 (845)
++++++..+.||+++|++++++..+.. . .. . ++.+++|+|+.+.++| .++.+|+++
T Consensus 283 ~a~~~e~~~~hp~~~Ai~~~~~~~~~~-~--------------------~~-~~~~~~~~~~gi~~~~~g~~~~~lg~~~ 340 (556)
T TIGR01525 283 LAAALEQSSSHPLARAIVRYAKKRGLE-L--------------------PK-QEDVEEVPGKGVEATVDGQEEVRIGNPR 340 (556)
T ss_pred HHHHHhccCCChHHHHHHHHHHhcCCC-c--------------------cc-ccCeeEecCCeEEEEECCeeEEEEecHH
Confidence 999999999999999999999765310 0 00 1 4556789999999999 699999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHccCeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCC-CeEEEEcCCCHHHHHHHH
Q 003131 760 LLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMG-VRPVMVTGDNWRTAHAVA 838 (845)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~g-i~v~mlTGD~~~tA~~iA 838 (845)
++.......+ +.+....++.++|++++++++|++++|.+.++|++||+++++|++|+++| ++++|+|||+..++.+++
T Consensus 341 ~~~~~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~ 419 (556)
T TIGR01525 341 LLELAAEPIS-ASPDLLNEGESQGKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVA 419 (556)
T ss_pred HHhhcCCCch-hhHHHHHHHhhCCcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHH
Confidence 8844333332 23344566788999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHcCCC
Q 003131 839 REVCVI 844 (845)
Q Consensus 839 ~~~GI~ 844 (845)
+++||+
T Consensus 420 ~~lgi~ 425 (556)
T TIGR01525 420 AELGID 425 (556)
T ss_pred HHhCCC
Confidence 999996
No 7
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=100.00 E-value=2.5e-68 Score=629.51 Aligned_cols=411 Identities=21% Similarity=0.327 Sum_probs=353.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCcc
Q 003131 397 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPAD 476 (845)
Q Consensus 397 ~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaD 476 (845)
|.+ +++++++++++..++.++++|+++.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.|++||+||||
T Consensus 55 ~~~-~~~i~~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~---Rdg---~~~~I~~~~Lv~GDiV~l~~Gd~IPaD 127 (755)
T TIGR01647 55 WVD-FVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKARVL---RDG---KWQEIPASELVPGDVVRLKIGDIVPAD 127 (755)
T ss_pred hhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE---ECC---EEEEEEhhhCcCCCEEEECCCCEEece
Confidence 444 5566677788889999999999999999999999999999 888 679999999999999999999999999
Q ss_pred EEEEecc-eeeeccccCCcceeeeccCCCceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHh
Q 003131 477 GIVVWGT-SYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVA 555 (845)
Q Consensus 477 g~ll~G~-~~Vdes~LTGEs~pv~k~~~~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~ 555 (845)
|+|++|+ ..||||+|||||.|+.|.+|+.+|+||.+.+|.++++|++||.+|.+|+|.+++++++.+++|+|+.+++++
T Consensus 128 g~vi~g~~~~VDeS~LTGES~PV~K~~~~~v~aGT~v~~G~~~~~V~~tG~~T~~g~i~~lv~~~~~~~~~lq~~~~~i~ 207 (755)
T TIGR01647 128 CRLFEGDYIQVDQAALTGESLPVTKKTGDIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIG 207 (755)
T ss_pred EEEEecCceEEEcccccCCccceEeccCCeeeccCEEEccEEEEEEEEcCCccHHHHHHHHhhccCCCCCcHHHHHHHHH
Confidence 9999998 779999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHHhcCeEE
Q 003131 556 SIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLI 635 (845)
Q Consensus 556 ~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~~gilv 635 (845)
.++++++++++++++++|++.. ..+|..++.+++++++++|||+||+++|++++.+.++|+|+|+++
T Consensus 208 ~~~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~gilv 274 (755)
T TIGR01647 208 LFLIVLIGVLVLIELVVLFFGR-------------GESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIV 274 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCCeEE
Confidence 9999999999988888776521 135778899999999999999999999999999999999999999
Q ss_pred ecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccC-CChhhHHHHHhhh-hccCCChhHHHHHHHHhhcCcCCCCCC
Q 003131 636 KGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-MDRGEFLTLVASA-EASSEHPLAKAVVEYARHFHFFDDPSL 713 (845)
Q Consensus 636 k~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~-~~~~~~~~~~~~~-~~~s~~p~~~al~~~~~~~~~~~~~~~ 713 (845)
|+++++|.||++|++|||||||||+|+|.|.+++..++ .+.++++.+++.+ +..+.||+++|+++++...+..
T Consensus 275 k~l~alE~lg~v~~i~~DKTGTLT~~~~~v~~~~~~~~~~~~~~~l~~a~~~~~~~~~~pi~~Ai~~~~~~~~~~----- 349 (755)
T TIGR01647 275 TRLTAIEELAGMDILCSDKTGTLTLNKLSIDEILPFFNGFDKDDVLLYAALASREEDQDAIDTAVLGSAKDLKEA----- 349 (755)
T ss_pred cccHHHHhccCCcEEEecCCCccccCceEEEEEEecCCCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhHHH-----
Confidence 99999999999999999999999999999999987654 5677788877755 4778999999999987654200
Q ss_pred CCCCCCCccccCCCccccccccccccCCCceEEEEc----CeE--EEEeehhhhhhcCC---CCChhhHHHHHHHHHccC
Q 003131 714 NPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFIS----GKQ--VLVGNRKLLNESGI---TIPDHVESFVVELEESAR 784 (845)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~----g~~--~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~g~ 784 (845)
.. ........+|++ .+++....++ |.. +.+|+++.+.+.+. ..++++++..+++..+|+
T Consensus 350 -~~----------~~~~~~~~pf~~-~~k~~~~~v~~~~~g~~~~~~kGa~e~il~~c~~~~~~~~~~~~~~~~~~~~G~ 417 (755)
T TIGR01647 350 -RD----------GYKVLEFVPFDP-VDKRTEATVEDPETGKRFKVTKGAPQVILDLCDNKKEIEEKVEEKVDELASRGY 417 (755)
T ss_pred -Hh----------cCceEEEeccCC-CCCeEEEEEEeCCCceEEEEEeCChHHHHHhcCCcHHHHHHHHHHHHHHHhCCC
Confidence 00 011122334443 3455555552 543 45799998765432 223455666778899999
Q ss_pred eEEEEEE-----CCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 785 TGILVAY-----DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 785 ~~l~va~-----~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
|++++|+ +++|+|+++|+||+|||++++|++||++||+++|+||||+.||.+||+++||.
T Consensus 418 rvl~vA~~~~e~~l~~~Gli~l~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~ 482 (755)
T TIGR01647 418 RALGVARTDEEGRWHFLGLLPLFDPPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLG 482 (755)
T ss_pred EEEEEEEEcCCCCcEEEEEeeccCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 9999999 23899999999999999999999999999999999999999999999999996
No 8
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=2e-67 Score=600.25 Aligned_cols=408 Identities=25% Similarity=0.331 Sum_probs=344.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCC-eEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEEE
Q 003131 401 SAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIV 479 (845)
Q Consensus 401 ~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~-~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~l 479 (845)
...+++.++++.++|.+++.|+++.+++|.++.|+ +++++ |||+ .+++|++++|+|||+|.|++||+||+||+|
T Consensus 69 ~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~vi---r~g~--~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~v 143 (679)
T PRK01122 69 TLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARKL---REPG--AAEEVPATELRKGDIVLVEAGEIIPADGEV 143 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEE---ECCC--EEEEEEHHHcCCCCEEEEcCCCEEEEEEEE
Confidence 44555567899999999999999999999999986 68888 6662 268899999999999999999999999999
Q ss_pred EecceeeeccccCCcceeeeccCCCc---eeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHhh
Q 003131 480 VWGTSYVNESMVTGEAVPVLKEINSP---VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVAS 556 (845)
Q Consensus 480 l~G~~~Vdes~LTGEs~pv~k~~~~~---v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 556 (845)
++|.+.||||+|||||.|+.|++|+. ||+||.+.+|.++++|+++|.+|.++||.+++++++.+|+|+|...+.+..
T Consensus 144 ieG~a~VDESaLTGES~PV~K~~G~~~~~V~aGT~v~~G~~~i~Vta~g~~S~lgki~~lve~a~~~ktp~e~al~~l~~ 223 (679)
T PRK01122 144 IEGVASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWIVIRITANPGESFLDRMIALVEGAKRQKTPNEIALTILLA 223 (679)
T ss_pred EEccEEEEcccccCCCCceEeCCCCccCeEEeceEEEeeeEEEEEEEecccCHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 99999999999999999999999988 999999999999999999999999999999999999999999988887766
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHHhcCeEEe
Q 003131 557 IFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIK 636 (845)
Q Consensus 557 ~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~~gilvk 636 (845)
++..+++++++..+.++++.+ .. .++.+++++++++|||+|+.++|.....++.+++|+|+++|
T Consensus 224 ~l~~i~l~~~~~~~~~~~~~g--------------~~--~~l~~~iallV~aiP~alg~l~~~i~i~g~~r~ak~gvLvk 287 (679)
T PRK01122 224 GLTIIFLLVVATLPPFAAYSG--------------GA--LSITVLVALLVCLIPTTIGGLLSAIGIAGMDRVLQANVIAT 287 (679)
T ss_pred hhhHHHHHHHHHHHHHHHHhC--------------ch--HHHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhcCCeeec
Confidence 665444433332222211111 12 26788899999999999999999999999999999999999
Q ss_pred cchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCCChhhHHHHHhhhhccCCChhHHHHHHHHhhc-CcCCCCCCCC
Q 003131 637 GGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHF-HFFDDPSLNP 715 (845)
Q Consensus 637 ~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~~p~~~al~~~~~~~-~~~~~~~~~~ 715 (845)
+++++|.+|++|++|||||||||+|+|.+.++++.++.+.++++.+++.++..+.||.++||+++++.. +. ...
T Consensus 288 ~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~a~~~s~~s~hP~~~AIv~~a~~~~~~-~~~---- 362 (679)
T PRK01122 288 SGRAVEAAGDVDTLLLDKTGTITLGNRQASEFLPVPGVTEEELADAAQLSSLADETPEGRSIVVLAKQRFNL-RER---- 362 (679)
T ss_pred CchHHHHhcCCCEEEEeCCCCCcCCcEEEEEEEeCCCCCHHHHHHHHHHhcCCCCCchHHHHHHHHHhhcCC-Cch----
Confidence 999999999999999999999999999999998887777888999999999999999999999998762 11 000
Q ss_pred CCCCCccccCCCccccccccccccCCCceEE-EEcCeEEEEeehhh----hhhcCCCCChhhHHHHHHHHHccCeEEEEE
Q 003131 716 DGQSHSKESTGSGWLLDVSDFSALPGRGIQC-FISGKQVLVGNRKL----LNESGITIPDHVESFVVELEESARTGILVA 790 (845)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~-~~~g~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~l~va 790 (845)
.. .....+..+|+...+ ..+ .++|..+.+|+++. +.+.+...|+++++..++++++|.|+++++
T Consensus 363 -~~--------~~~~~~~~pF~s~~~--~~gv~~~g~~~~kGa~e~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~va 431 (679)
T PRK01122 363 -DL--------QSLHATFVPFSAQTR--MSGVDLDGREIRKGAVDAIRRYVESNGGHFPAELDAAVDEVARKGGTPLVVA 431 (679)
T ss_pred -hh--------ccccceeEeecCcCc--eEEEEECCEEEEECCHHHHHHHHHhcCCcChHHHHHHHHHHHhCCCcEEEEE
Confidence 00 001123345555432 222 35788899999864 444566667777777888999999999999
Q ss_pred ECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 003131 791 YDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVID 845 (845)
Q Consensus 791 ~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~~ 845 (845)
+|++++|+++++|++|||++++|++||++||+++|+||||+.||.+||+++||++
T Consensus 432 ~~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~ 486 (679)
T PRK01122 432 EDNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDD 486 (679)
T ss_pred ECCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcE
Confidence 9999999999999999999999999999999999999999999999999999974
No 9
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=100.00 E-value=1e-67 Score=604.49 Aligned_cols=403 Identities=39% Similarity=0.608 Sum_probs=369.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecC
Q 003131 365 MDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK 444 (845)
Q Consensus 365 md~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r 444 (845)
||+|+++++..+|+++ .||+. ++++++++++++++.++++|+.+.+++|.++.|.+++++ |
T Consensus 1 ~~~l~~~a~~~~~~~~---------------~~~~~-~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~---r 61 (536)
T TIGR01512 1 VDLLMALAALGAVAIG---------------EYLEG-ALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVL---R 61 (536)
T ss_pred CcHHHHHHHHHHHHHh---------------hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEE---E
Confidence 7899999999888765 46665 778889999999999999999999999999999999999 7
Q ss_pred CCceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEecceeeeccccCCcceeeeccCCCceeccceeecceEEEEEEEe
Q 003131 445 VGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKV 524 (845)
Q Consensus 445 ~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~G~~~Vdes~LTGEs~pv~k~~~~~v~aGt~~~~g~~~~~v~~~ 524 (845)
|| +++++++++|+|||+|.|++||+|||||+|++|++.||||+|||||.|+.|++|+.+|+||.+.+|.++++|+++
T Consensus 62 ~g---~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~~vdes~lTGEs~pv~k~~g~~v~aGt~v~~G~~~~~V~~~ 138 (536)
T TIGR01512 62 GG---SLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTSTVDESALTGESVPVEKAPGDEVFAGAINLDGVLTIVVTKL 138 (536)
T ss_pred CC---EEEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcEEEEecccCCCCCcEEeCCCCEEEeeeEECCceEEEEEEEe
Confidence 88 678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhh
Q 003131 525 GSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISV 604 (845)
Q Consensus 525 g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 604 (845)
|.+|.+|++.+++++++.+++|+++.+++++++|++++++++++++++|++.. .+..++.+++++
T Consensus 139 g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~sv 203 (536)
T TIGR01512 139 PADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALAIWLVPGLLK---------------RWPFWVYRALVL 203 (536)
T ss_pred ccccHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------ccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888876532 122378889999
Q ss_pred heeecccccchhhHHHHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCCChhhHHHHHh
Q 003131 605 VVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVA 684 (845)
Q Consensus 605 lv~~~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~ 684 (845)
++++|||+|++++|+++..++.+++|+||++|+++++|+++++|++|||||||||+|+|+|.++++ .+++.+++
T Consensus 204 lv~~~P~aL~la~~~~~~~~~~~~~k~gilik~~~~le~l~~v~~i~fDKTGTLT~~~~~v~~~~~------~~~l~~a~ 277 (536)
T TIGR01512 204 LVVASPCALVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTGTLTTGRPKVVDVVP------AEVLRLAA 277 (536)
T ss_pred HhhcCccccccchHHHHHHHHHHHHHCCeEEcCcHHHHhhcCCCEEEECCCCCCcCCceEEEEeeH------HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999865 37899999
Q ss_pred hhhccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccccccccCCCceEEEEcCeEEEEeehhhhhhc
Q 003131 685 SAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNES 764 (845)
Q Consensus 685 ~~~~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~g~~~~~g~~~~~~~~ 764 (845)
+++..+.||+++||++++++.. .+.++++.+|+|+.+.++|.++.+|+++++.+.
T Consensus 278 ~~e~~~~hp~~~Ai~~~~~~~~-------------------------~~~~~~~~~g~gi~~~~~g~~~~ig~~~~~~~~ 332 (536)
T TIGR01512 278 AAEQASSHPLARAIVDYARKRE-------------------------NVESVEEVPGEGVRAVVDGGEVRIGNPRSLEAA 332 (536)
T ss_pred HHhccCCCcHHHHHHHHHHhcC-------------------------CCcceEEecCCeEEEEECCeEEEEcCHHHHhhc
Confidence 9999999999999999987641 223456778999999999999999999988765
Q ss_pred CCCCChhhHHHHHHHHHccCeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCC-eEEEEcCCCHHHHHHHHHHcCC
Q 003131 765 GITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGV-RPVMVTGDNWRTAHAVAREVCV 843 (845)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~g~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi-~v~mlTGD~~~tA~~iA~~~GI 843 (845)
+.. .+..+|.+++++++|+.++|.+.++|++||+++++|++|+++|+ ++.|+|||+..+|.++++++||
T Consensus 333 ~~~----------~~~~~~~~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi 402 (536)
T TIGR01512 333 VGA----------RPESAGKTIVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGI 402 (536)
T ss_pred CCc----------chhhCCCeEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCC
Confidence 432 34567889999999999999999999999999999999999999 9999999999999999999998
Q ss_pred CC
Q 003131 844 ID 845 (845)
Q Consensus 844 ~~ 845 (845)
++
T Consensus 403 ~~ 404 (536)
T TIGR01512 403 DE 404 (536)
T ss_pred hh
Confidence 63
No 10
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=100.00 E-value=2.7e-66 Score=589.26 Aligned_cols=413 Identities=26% Similarity=0.355 Sum_probs=343.4
Q ss_pred chhhhHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCe-EEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCc
Q 003131 396 TYFETSAM--LITFVLFGKYLEILAKGKTSDAIKKLVELAPAT-ALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTK 472 (845)
Q Consensus 396 ~~~~~~~~--i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~-~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~ 472 (845)
.||+.++. +++.++++.++|.+++.|+++++++|.++.|+. +++++ +|| ++++|++++|+|||+|.|++||+
T Consensus 63 ~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a~vlr--~dg---~~~~V~~~~L~~GDiV~V~~Gd~ 137 (675)
T TIGR01497 63 ALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFAKLLR--DDG---AIDKVPADQLKKGDIVLVEAGDV 137 (675)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEe--eCC---EEEEEEHHHCCCCCEEEECCCCE
Confidence 46665433 333468999999999999999999999998874 77762 367 67899999999999999999999
Q ss_pred cCccEEEEecceeeeccccCCcceeeeccCCCc---eeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChhhH
Q 003131 473 LPADGIVVWGTSYVNESMVTGEAVPVLKEINSP---VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQK 549 (845)
Q Consensus 473 vPaDg~ll~G~~~Vdes~LTGEs~pv~k~~~~~---v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~ 549 (845)
||+||+|++|++.||||+|||||.|+.|++|+. |++||.+.+|+++++|+++|.+|++++|.+++++++.+|+|+|.
T Consensus 138 IPaDG~vieG~~~VDESaLTGES~PV~K~~g~~~~~V~aGT~v~~G~~~i~Vt~~g~~S~lgri~~lve~a~~~ktplq~ 217 (675)
T TIGR01497 138 IPCDGEVIEGVASVDESAITGESAPVIKESGGDFASVTGGTRILSDWLVVECTANPGETFLDRMIALVEGAQRRKTPNEI 217 (675)
T ss_pred EeeeEEEEEccEEEEcccccCCCCceeecCCCCcceeecCcEEEeeEEEEEEEEecccCHHHHHHHHHHhcccCCChHHH
Confidence 999999999999999999999999999999975 99999999999999999999999999999999999999999998
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHH
Q 003131 550 FADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGA 629 (845)
Q Consensus 550 ~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~ 629 (845)
..+.+..++..+++ ++. +.+|.+..+ . ....++..++++++++|||+|+...|.....++.+++
T Consensus 218 ~l~~l~~~l~~v~l-i~~--~~~~~~~~~-~------------~~~~~~~~lvallV~aiP~aLg~l~~av~iag~~r~a 281 (675)
T TIGR01497 218 ALTILLIALTLVFL-LVT--ATLWPFAAY-G------------GNAISVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVL 281 (675)
T ss_pred HHHHHHHHHHHHHH-HHH--HHHHHHHHh-c------------ChhHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHH
Confidence 77776654443322 222 222332111 0 1123567779999999999999988988889999999
Q ss_pred hcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCCChhhHHHHHhhhhccCCChhHHHHHHHHhhcCcCC
Q 003131 630 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFD 709 (845)
Q Consensus 630 ~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~~p~~~al~~~~~~~~~~~ 709 (845)
|+|+++|+++++|.+|++|++|||||||||+|+|++.++++.++.+.++++.+++.++..++||.++|++++++..+...
T Consensus 282 r~gvLvK~~~avE~lg~v~~I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~aa~~~~~s~hP~a~Aiv~~a~~~~~~~ 361 (675)
T TIGR01497 282 GFNVIATSGRAVEACGDVDTLLLDKTGTITLGNRLASEFIPAQGVDEKTLADAAQLASLADDTPEGKSIVILAKQLGIRE 361 (675)
T ss_pred HCCeEeeCcHHHHHhhCCCEEEECCCCcccCCCeEEEEEEecCCCcHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999988777778889999999999999999999999987653210
Q ss_pred CCCCCCCCCCCccccCCCccccccccccccCCCceEEE--EcCeEEEEeehhh----hhhcCCCCChhhHHHHHHHHHcc
Q 003131 710 DPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCF--ISGKQVLVGNRKL----LNESGITIPDHVESFVVELEESA 783 (845)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~--~~g~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~g 783 (845)
.. . .....+..+|+... ++.+. .+|..+.+|+++. +..++...|.++++..++++++|
T Consensus 362 ~~------~--------~~~~~~~~pf~~~~--~~sg~~~~~g~~~~kGa~e~i~~~~~~~g~~~~~~~~~~~~~~a~~G 425 (675)
T TIGR01497 362 DD------V--------QSLHATFVEFTAQT--RMSGINLDNGRMIRKGAVDAIKRHVEANGGHIPTDLDQAVDQVARQG 425 (675)
T ss_pred cc------c--------ccccceEEEEcCCC--cEEEEEEeCCeEEEECCHHHHHHHHHhcCCCCcHHHHHHHHHHHhCC
Confidence 00 0 00112233444432 33332 4788899999854 44556667777777788899999
Q ss_pred CeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 003131 784 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVID 845 (845)
Q Consensus 784 ~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~~ 845 (845)
.|++++++|++++|+++++|++|||++++|++||++||+++|+||||+.||.++|+++||++
T Consensus 426 ~r~l~va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~ 487 (675)
T TIGR01497 426 GTPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDD 487 (675)
T ss_pred CeEEEEEECCEEEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999963
No 11
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=100.00 E-value=1.8e-65 Score=583.62 Aligned_cols=399 Identities=25% Similarity=0.339 Sum_probs=329.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHccCCC-eEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEeccee
Q 003131 407 FVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY 485 (845)
Q Consensus 407 ~~~~~~~l~~~~~~k~~~~l~~l~~~~~~-~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~G~~~ 485 (845)
.++++.++|.++++|+++++++|.++.|+ +++++. ||| ++++|++++|+|||+|.|++||+|||||+|++|.+.
T Consensus 75 ~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~~v~--rdg---~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~~~ 149 (673)
T PRK14010 75 TLVFANFSEALAEGRGKAQANALRQTQTEMKARRIK--QDG---SYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGLAT 149 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEE--eCC---EEEEEEHHHcCCCCEEEECCCCcccCCeEEEEcceE
Confidence 44689999999999999999999999987 776432 678 678999999999999999999999999999999999
Q ss_pred eeccccCCcceeeeccCC---CceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHH
Q 003131 486 VNESMVTGEAVPVLKEIN---SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIV 562 (845)
Q Consensus 486 Vdes~LTGEs~pv~k~~~---~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (845)
||||+|||||.|+.|++| +.||+||.+.+|+++++|+++|.+|+++||.+++++++.+|+|+|.....+...
T Consensus 150 VDESaLTGES~PV~K~~g~d~~~V~aGT~v~~G~~~i~Vta~g~~T~lgki~~lve~a~~~ktp~e~~l~~l~~~----- 224 (673)
T PRK14010 150 VDESAITGESAPVIKESGGDFDNVIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEGATRKKTPNEIALFTLLMT----- 224 (673)
T ss_pred EecchhcCCCCceeccCCCccCeeecCceeecceEEEEEEEecccCHHHHHHHHHhhccccCCHHHHHHHHHHHH-----
Confidence 999999999999999999 889999999999999999999999999999999999999999999655443322
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHHhcCeEEecchHHH
Q 003131 563 VTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALE 642 (845)
Q Consensus 563 ~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~e 642 (845)
+.+.++++++|++... . ...+...+...+++++.++||+|+.++|++...++.+++|+|+++|+++++|
T Consensus 225 l~ii~l~~~~~~~~~~--~---------~~~~~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~r~ak~gvLvk~~~avE 293 (673)
T PRK14010 225 LTIIFLVVILTMYPLA--K---------FLNFNLSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQFNILAKSGRSVE 293 (673)
T ss_pred HhHHHHHHHHHHHHHH--h---------hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCEEEeCcHHHH
Confidence 2222222223322100 0 0123345667777777889999999999999999999999999999999999
Q ss_pred hhcCCcEEEecCCCccccCCeEEEEEEeccCCChhhHHHHHhhhhccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCcc
Q 003131 643 RAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSK 722 (845)
Q Consensus 643 ~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 722 (845)
.+|++|++|||||||||+|++.+.++.+..+.+.++++..++.++..+.||+++|++++++..+.. ..
T Consensus 294 ~lg~v~vI~~DKTGTLT~Gn~~~~~~~~~~~~~~~~ll~~a~~~~~~s~~P~~~AIv~~a~~~~~~-~~----------- 361 (673)
T PRK14010 294 TCGDVNVLILDKTGTITYGNRMADAFIPVKSSSFERLVKAAYESSIADDTPEGRSIVKLAYKQHID-LP----------- 361 (673)
T ss_pred HhhCCCEEEEeCCCcCCCCCeEEEEEEeCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHcCCC-ch-----------
Confidence 999999999999999999999888877766666677888888888899999999999998765320 00
Q ss_pred ccCCCccccccccccccC-CCceEEEEcCeEEEEeehhhhh----hcCCCCChhhHHHHHHHHHccCeEEEEEECCeEEE
Q 003131 723 ESTGSGWLLDVSDFSALP-GRGIQCFISGKQVLVGNRKLLN----ESGITIPDHVESFVVELEESARTGILVAYDDNLIG 797 (845)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~-g~gi~~~~~g~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~l~va~~~~~lG 797 (845)
....+..+|+... +.|+. ++|..+.+|+++++. +.+...|.++++..++++++|+|+++++.|++++|
T Consensus 362 -----~~~~~~~pF~~~~k~~gv~--~~g~~i~kGa~~~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~v~~~~~~lG 434 (673)
T PRK14010 362 -----QEVGEYIPFTAETRMSGVK--FTTREVYKGAPNSMVKRVKEAGGHIPVDLDALVKGVSKKGGTPLVVLEDNEILG 434 (673)
T ss_pred -----hhhcceeccccccceeEEE--ECCEEEEECCHHHHHHHhhhcCCCCchHHHHHHHHHHhCCCeEEEEEECCEEEE
Confidence 0001223454332 34443 577888899998774 23444566666777788999999999999999999
Q ss_pred EEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 003131 798 VMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVID 845 (845)
Q Consensus 798 ~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~~ 845 (845)
+++|+||+|||++++|++||++||+++|+||||+.||.+||+++||++
T Consensus 435 ~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~ 482 (673)
T PRK14010 435 VIYLKDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDR 482 (673)
T ss_pred EEEeecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCce
Confidence 999999999999999999999999999999999999999999999963
No 12
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=100.00 E-value=3e-65 Score=609.94 Aligned_cols=416 Identities=20% Similarity=0.223 Sum_probs=338.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCce---eeeEEeecCCcCCCCEEEEcCCCc
Q 003131 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKC---IEEREIDALLIQSGDTLKVLPGTK 472 (845)
Q Consensus 396 ~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~---~~~~~i~~~~l~~GDii~v~~G~~ 472 (845)
.|. .+++++++++++.+++.++++|+.+.+++|.++.|.+++|+ |||+. .++++|++++|+|||+|.|++||+
T Consensus 121 ~~~-~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~Vi---R~g~~~~~g~~~~I~~~eLvpGDiV~l~~Gd~ 196 (902)
T PRK10517 121 DLF-AAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL---RVINDKGENGWLEIPIDQLVPGDIIKLAAGDM 196 (902)
T ss_pred cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE---ECCccCCCCeEEEEEHHhCCCCCEEEECCCCE
Confidence 344 46677788899999999999999999999999999999999 66210 167899999999999999999999
Q ss_pred cCccEEEEecce-eeeccccCCcceeeeccCCC-------------ceeccceeecceEEEEEEEecCccHHHHHHHHHH
Q 003131 473 LPADGIVVWGTS-YVNESMVTGEAVPVLKEINS-------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVE 538 (845)
Q Consensus 473 vPaDg~ll~G~~-~Vdes~LTGEs~pv~k~~~~-------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~ 538 (845)
|||||+|++|+. .||||+|||||.|+.|.+++ .+|+||.+.+|.++++|++||.+|.+|+|.++++
T Consensus 197 IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~vV~atG~~T~~GkI~~~v~ 276 (902)
T PRK10517 197 IPADLRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGRVS 276 (902)
T ss_pred EeeeEEEEEcCceEEEecCcCCCCCceecccccccccccCccccccceeeCceEeeeeEEEEEEEeccccHHHHHHHHhh
Confidence 999999999986 69999999999999998874 6999999999999999999999999999999999
Q ss_pred hhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhH
Q 003131 539 TAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATP 618 (845)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p 618 (845)
+++.+++|+|+.++++++++.+++++++.++++++.+.. .+|..++.+++++++++|||+||++++
T Consensus 277 ~~~~~~t~lq~~~~~i~~~l~~~~~~~~~~v~~i~~~~~--------------~~~~~~l~~alsv~V~~~Pe~LP~~vt 342 (902)
T PRK10517 277 EQDSEPNAFQQGISRVSWLLIRFMLVMAPVVLLINGYTK--------------GDWWEAALFALSVAVGLTPEMLPMIVT 342 (902)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhc--------------CCHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 998899999999999999999988888887776654421 257778999999999999999999999
Q ss_pred HHHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCCChhhHHHHHhhh---hccCCChhH
Q 003131 619 TAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASA---EASSEHPLA 695 (845)
Q Consensus 619 ~~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~s~~p~~ 695 (845)
++++.+..+|+|+|+++|+++++|++|++|++|||||||||+|+|.|.++....+.+.++++.+++.. +...+||++
T Consensus 343 ~~la~g~~~mak~~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~~~~~~~~~~ll~~a~l~~~~~~~~~~p~d 422 (902)
T PRK10517 343 STLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDISGKTSERVLHSAWLNSHYQTGLKNLLD 422 (902)
T ss_pred HHHHHHHHHHHhCCcEEecchhhhhccCCCEEEecCCCccccceEEEEEEecCCCCCHHHHHHHHHhcCCcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999987654444556677765542 233589999
Q ss_pred HHHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccccccccCCCceEEEEc---Ce--EEEEeehhhhhhc------
Q 003131 696 KAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFIS---GK--QVLVGNRKLLNES------ 764 (845)
Q Consensus 696 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~---g~--~~~~g~~~~~~~~------ 764 (845)
.|+++++...... .. .. ........+|++... ++.+.++ +. .+..|+++.+.+.
T Consensus 423 ~All~~a~~~~~~---~~-~~----------~~~~~~~~pFds~~k-~msvvv~~~~~~~~~~~KGa~e~il~~c~~~~~ 487 (902)
T PRK10517 423 TAVLEGVDEESAR---SL-AS----------RWQKIDEIPFDFERR-RMSVVVAENTEHHQLICKGALEEILNVCSQVRH 487 (902)
T ss_pred HHHHHHHHhcchh---hh-hh----------cCceEEEeeeCCCcc-eEEEEEEECCCeEEEEEeCchHHHHHhchhhhc
Confidence 9999987653200 00 00 000011123333322 2232221 21 3445666544322
Q ss_pred -CC--CCCh----hhHHHHHHHHHccCeEEEEEE----------------CCeEEEEEEeeCCCChhHHHHHHHHHhCCC
Q 003131 765 -GI--TIPD----HVESFVVELEESARTGILVAY----------------DDNLIGVMGIADPVKREAAVVVEGLLKMGV 821 (845)
Q Consensus 765 -~~--~~~~----~~~~~~~~~~~~g~~~l~va~----------------~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi 821 (845)
+. +..+ ++.+..++++.+|+|++++|| |++|+|+++|+||+|||++++|++||++||
T Consensus 488 ~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~e~~l~~lGli~~~Dp~R~~a~~aI~~l~~aGI 567 (902)
T PRK10517 488 NGEIVPLDDIMLRRIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGV 567 (902)
T ss_pred CCCeecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCccccccccccccCceeeehHhhhCcchhhHHHHHHHHHHCCC
Confidence 21 1222 233445678899999999997 568999999999999999999999999999
Q ss_pred eEEEEcCCCHHHHHHHHHHcCCC
Q 003131 822 RPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 822 ~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+++|+||||+.||.+||+++||.
T Consensus 568 ~v~miTGD~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 568 TVKILTGDSELVAAKVCHEVGLD 590 (902)
T ss_pred EEEEEcCCCHHHHHHHHHHcCCC
Confidence 99999999999999999999995
No 13
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=100.00 E-value=2e-64 Score=603.72 Aligned_cols=409 Identities=19% Similarity=0.238 Sum_probs=337.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecC------CCceeeeEEeecCCcCCCCEEEEcCCCcc
Q 003131 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDK------VGKCIEEREIDALLIQSGDTLKVLPGTKL 473 (845)
Q Consensus 400 ~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r------~g~~~~~~~i~~~~l~~GDii~v~~G~~v 473 (845)
.+++++++++++.+++.++++|+++++++|.++.+..++|+ | || ++++|++++|+|||+|.|++||+|
T Consensus 90 ~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~---R~~~~~~dg---~~~~I~~~eLv~GDiV~l~~Gd~V 163 (867)
T TIGR01524 90 ATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVL---RVINENGNG---SMDEVPIDALVPGDLIELAAGDII 163 (867)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEE---EecccCCCC---eEEEEEhhcCCCCCEEEECCCCEE
Confidence 46667777888899999999999999999999999999998 6 77 679999999999999999999999
Q ss_pred CccEEEEecce-eeeccccCCcceeeeccCCC-------------ceeccceeecceEEEEEEEecCccHHHHHHHHHHh
Q 003131 474 PADGIVVWGTS-YVNESMVTGEAVPVLKEINS-------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVET 539 (845)
Q Consensus 474 PaDg~ll~G~~-~Vdes~LTGEs~pv~k~~~~-------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~ 539 (845)
||||+|++|+. .||||+|||||.|+.|.+++ .+|+||.+.+|.++++|++||.+|.+|+|.+++++
T Consensus 164 PaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~ 243 (867)
T TIGR01524 164 PADARVISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAATE 243 (867)
T ss_pred cccEEEEecCceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHhhC
Confidence 99999999986 69999999999999998864 59999999999999999999999999999999988
Q ss_pred hhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHH
Q 003131 540 AQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPT 619 (845)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~ 619 (845)
..+++|+|+.++++++++.+++++++++++++|.+.. .+|..++.+++++++++|||+||+++|+
T Consensus 244 -~~~~t~lq~~~~~i~~~~~~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~al~l~v~~iP~~Lp~~vt~ 308 (867)
T TIGR01524 244 -RRGQTAFDKGVKSVSKLLIRFMLVMVPVVLMINGLMK--------------GDWLEAFLFALAVAVGLTPEMLPMIVSS 308 (867)
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHHHHHheehHHHhc--------------CCHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 6678999999999999999999988888777665421 2467789999999999999999999999
Q ss_pred HHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCCChhhHHHHHhh---hhccCCChhHH
Q 003131 620 AVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVAS---AEASSEHPLAK 696 (845)
Q Consensus 620 ~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~s~~p~~~ 696 (845)
+++.+..+|+|+|+++|+++++|.||++|++|||||||||+|+|+|.+++...+.+.++++.+++. .+..++||++.
T Consensus 309 ~la~g~~~mak~~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~~~~~~~~~~~l~~a~l~~~~~~~~~~p~~~ 388 (867)
T TIGR01524 309 NLAKGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHIDSSGETSERVLKMAWLNSYFQTGWKNVLDH 388 (867)
T ss_pred HHHHHHHHHHhCCcEEccchhhhhccCccEEEecCCCccccCeEEEEEEecCCCCCHHHHHHHHHHhCCCCCCCCChHHH
Confidence 999999999999999999999999999999999999999999999999876555556667766553 22345799999
Q ss_pred HHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccccccccCCCceEEEEcC-----eEEEEeehhhhhhcC------
Q 003131 697 AVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFISG-----KQVLVGNRKLLNESG------ 765 (845)
Q Consensus 697 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~g-----~~~~~g~~~~~~~~~------ 765 (845)
|+++++...... .... ........+|++.. +++.+.+++ ..+..|+++.+...+
T Consensus 389 Al~~~~~~~~~~----~~~~----------~~~~~~~~pF~s~~-k~ms~~v~~~~~~~~~~~KGa~e~il~~c~~~~~~ 453 (867)
T TIGR01524 389 AVLAKLDESAAR----QTAS----------RWKKVDEIPFDFDR-RRLSVVVENRAEVTRLICKGAVEEMLTVCTHKRFG 453 (867)
T ss_pred HHHHHHHhhchh----hHhh----------cCceEEEeccCCCc-CEEEEEEEcCCceEEEEEeCcHHHHHHhchhhhcC
Confidence 999988643100 0000 00011122344432 344444432 135567766553322
Q ss_pred -C--CCC----hhhHHHHHHHHHccCeEEEEEE----------------CCeEEEEEEeeCCCChhHHHHHHHHHhCCCe
Q 003131 766 -I--TIP----DHVESFVVELEESARTGILVAY----------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVR 822 (845)
Q Consensus 766 -~--~~~----~~~~~~~~~~~~~g~~~l~va~----------------~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~ 822 (845)
. ... +++++..++++.+|+|++++|+ |++|+|+++|+||+|+|++++|++||++||+
T Consensus 454 ~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~~~~aI~~l~~aGI~ 533 (867)
T TIGR01524 454 GAVVTLSESEKSELQDMTAEMNRQGIRVIAVATKTLKVGEADFTKTDEEQLIIEGFLGFLDPPKESTKEAIAALFKNGIN 533 (867)
T ss_pred CceecCCHHHHHHHHHHHHHHHhcCCEEEEEEEeccCcccccccccccCCcEEEEEEEeeCCCchhHHHHHHHHHHCCCE
Confidence 1 111 2344556778899999999998 2379999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHcCCC
Q 003131 823 PVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 823 v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++|+||||+.||.+||+++||.
T Consensus 534 vvmiTGD~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 534 VKVLTGDNEIVTARICQEVGID 555 (867)
T ss_pred EEEEcCCCHHHHHHHHHHcCCC
Confidence 9999999999999999999996
No 14
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=100.00 E-value=1.5e-63 Score=596.53 Aligned_cols=415 Identities=20% Similarity=0.255 Sum_probs=332.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCc---eeeeEEeecCCcCCCCEEEEcCCCc
Q 003131 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGK---CIEEREIDALLIQSGDTLKVLPGTK 472 (845)
Q Consensus 396 ~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~---~~~~~~i~~~~l~~GDii~v~~G~~ 472 (845)
.|. .+++++++++++.+++.++++|+++++++|.++.|.+++|+ |||. ..++++|++++|+|||+|.|++||+
T Consensus 110 ~~~-~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~---Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~ 185 (903)
T PRK15122 110 DLT-GVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVL---RRGHAGAEPVRREIPMRELVPGDIVHLSAGDM 185 (903)
T ss_pred cHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEE---ECCccCCCCeEEEEEHHHCCCCCEEEECCCCE
Confidence 344 46667788888999999999999999999999999999998 5531 0157899999999999999999999
Q ss_pred cCccEEEEecce-eeeccccCCcceeeeccC-----------------------CCceeccceeecceEEEEEEEecCcc
Q 003131 473 LPADGIVVWGTS-YVNESMVTGEAVPVLKEI-----------------------NSPVIGGTINLHGVLHIQATKVGSDA 528 (845)
Q Consensus 473 vPaDg~ll~G~~-~Vdes~LTGEs~pv~k~~-----------------------~~~v~aGt~~~~g~~~~~v~~~g~~t 528 (845)
|||||+|++|+. .||||+|||||.|+.|.+ ++.+|+||.+.+|.++++|++||.+|
T Consensus 186 IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T 265 (903)
T PRK15122 186 IPADVRLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRT 265 (903)
T ss_pred EeeeEEEEEcCceEEEccccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEecccc
Confidence 999999999986 699999999999999975 26799999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheee
Q 003131 529 VLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIA 608 (845)
Q Consensus 529 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~ 608 (845)
.+|+|.+++.+ ...++|+++.++++++++..+.+.++.+++++.++. ..+|..++.+++++++++
T Consensus 266 ~~gkI~~~v~~-~~~~t~l~~~l~~i~~~l~~~~~~~~~~v~~~~~~~--------------~~~~~~~l~~aisl~V~~ 330 (903)
T PRK15122 266 YFGSLAKSIVG-TRAQTAFDRGVNSVSWLLIRFMLVMVPVVLLINGFT--------------KGDWLEALLFALAVAVGL 330 (903)
T ss_pred HhhHHHHHhcC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc--------------cCCHHHHHHHHHHHHHHH
Confidence 99999999987 556789999999999888777666665554433221 135778889999999999
Q ss_pred cccccchhhHHHHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCCChhhHHHHHhhh--
Q 003131 609 CPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASA-- 686 (845)
Q Consensus 609 ~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~-- 686 (845)
|||+||+++|++++.+..+|+|+|+++|+++++|.||++|++|||||||||+|+|.|.+++..++.+.++++.+++..
T Consensus 331 ~Pe~Lp~~vt~~La~g~~~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~~~~~~~~~~~l~~a~l~s~ 410 (903)
T PRK15122 331 TPEMLPMIVSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHLDVSGRKDERVLQLAWLNSF 410 (903)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEEcCCCCChHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999998876655556677665432
Q ss_pred -hccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccccccccCCCceEEEE---cCeEE--EEeehhh
Q 003131 687 -EASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFI---SGKQV--LVGNRKL 760 (845)
Q Consensus 687 -~~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~---~g~~~--~~g~~~~ 760 (845)
+..++||++.|+++++...+.... .. ........+|++..++ +...+ +|..+ ..|+++.
T Consensus 411 ~~~~~~~p~e~All~~a~~~~~~~~----~~----------~~~~~~~~pF~s~~k~-ms~v~~~~~~~~~~~~KGa~e~ 475 (903)
T PRK15122 411 HQSGMKNLMDQAVVAFAEGNPEIVK----PA----------GYRKVDELPFDFVRRR-LSVVVEDAQGQHLLICKGAVEE 475 (903)
T ss_pred CCCCCCChHHHHHHHHHHHcCchhh----hh----------cCceEEEeeeCCCcCE-EEEEEEcCCCcEEEEECCcHHH
Confidence 334689999999999876532100 00 0001112234443332 11111 34433 3377664
Q ss_pred hhh-------cCC--CCCh----hhHHHHHHHHHccCeEEEEEE------------------CCeEEEEEEeeCCCChhH
Q 003131 761 LNE-------SGI--TIPD----HVESFVVELEESARTGILVAY------------------DDNLIGVMGIADPVKREA 809 (845)
Q Consensus 761 ~~~-------~~~--~~~~----~~~~~~~~~~~~g~~~l~va~------------------~~~~lG~~~~~D~lr~~~ 809 (845)
+.. ++. ++++ .+.+..++++.+|+|++++|| |++|+|+++|+||+|||+
T Consensus 476 il~~c~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~~~~~~~e~~l~~lGli~l~Dp~R~~a 555 (903)
T PRK15122 476 MLAVATHVRDGDTVRPLDEARRERLLALAEAYNADGFRVLLVATREIPGGESRAQYSTADERDLVIRGFLTFLDPPKESA 555 (903)
T ss_pred HHHhchhhhcCCCeecCCHHHHHHHHHHHHHHHhCCCEEEEEEEeccCccccccccccccccCcEEEEEEeccCccHHHH
Confidence 432 222 2222 234456678899999999996 348999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 810 AVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 810 ~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+++|++||++||+++|+||||+.||.+||+++||.
T Consensus 556 ~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~ 590 (903)
T PRK15122 556 APAIAALRENGVAVKVLTGDNPIVTAKICREVGLE 590 (903)
T ss_pred HHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999995
No 15
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=100.00 E-value=5.8e-63 Score=595.23 Aligned_cols=408 Identities=22% Similarity=0.287 Sum_probs=321.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEec
Q 003131 403 MLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 482 (845)
Q Consensus 403 ~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~G 482 (845)
.+++++++...+..++++|+++.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.|++||+|||||+|++|
T Consensus 85 ~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~Vi---Rdg---~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g 158 (884)
T TIGR01522 85 SITLAILIVVTVGFVQEYRSEKSLEALNKLVPPECHLI---REG---KLEHVLASTLVPGDLVCLSVGDRVPADLRIVEA 158 (884)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE---ECC---EEEEEEHHHCccCCEEEecCCCEEeeeEEEEEc
Confidence 33344444556666777788899999999999999999 888 779999999999999999999999999999999
Q ss_pred c-eeeeccccCCcceeeeccCCC--------------ceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChh
Q 003131 483 T-SYVNESMVTGEAVPVLKEINS--------------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPI 547 (845)
Q Consensus 483 ~-~~Vdes~LTGEs~pv~k~~~~--------------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~ 547 (845)
+ ..||||+|||||.|+.|.+++ .+|+||.+.+|.++++|++||.+|.+|+|.+++++++.+++|+
T Consensus 159 ~~l~VDES~LTGES~pv~K~~~~~~~~~~~~~~~~~n~v~~GT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~kt~l 238 (884)
T TIGR01522 159 VDLSIDESNLTGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQAIEKPKTPL 238 (884)
T ss_pred CceEEEcccccCCCcceecccccccccccccccccCceEEeCCEEEeeeEEEEEEEecCccHHHHHHHHhccCCCCCCcH
Confidence 6 679999999999999998864 7999999999999999999999999999999999999899999
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHH
Q 003131 548 QKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGV 627 (845)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~ 627 (845)
|+.++++++++.++++++++++++++++. ..+|..++.+++++++++|||+||+++|++++.++++
T Consensus 239 q~~l~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~v~llv~aiP~~Lp~~vt~~l~~~~~r 304 (884)
T TIGR01522 239 QKSMDLLGKQLSLVSFGVIGVICLVGWFQ--------------GKDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLR 304 (884)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------cCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 99999999999887766655555443322 1357788999999999999999999999999999999
Q ss_pred HHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCCC----------------------------hhhH
Q 003131 628 GANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD----------------------------RGEF 679 (845)
Q Consensus 628 ~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~----------------------------~~~~ 679 (845)
|+|+|+++|+++++|.||++|++|||||||||+|+|+|.+++..++.. ..++
T Consensus 305 ~ak~~ilvk~~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (884)
T TIGR01522 305 MSKKRAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSDGLHTMLNAVSLNQFGEVIVDGDVLHGFYTVAVSRI 384 (884)
T ss_pred HhhcCCcccchHHHHhccCccEEEecCccccccCeEEEEEEEecCceEeeccCCccCCCCcccccccccccccCHHHHHH
Confidence 999999999999999999999999999999999999999987643210 0233
Q ss_pred HHHHhhhhcc---------CCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccccccccCC---------
Q 003131 680 LTLVASAEAS---------SEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPG--------- 741 (845)
Q Consensus 680 ~~~~~~~~~~---------s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------- 741 (845)
+..++.+... .+||++.|+++++...+... .. .. .......+|++..+
T Consensus 385 l~~~~l~~~~~~~~~~~~~~g~p~e~All~~~~~~~~~~-~~---~~----------~~~~~~~pF~s~~k~m~v~~~~~ 450 (884)
T TIGR01522 385 LEAGNLCNNAKFRNEADTLLGNPTDVALIELLMKFGLDD-LR---ET----------YIRVAEVPFSSERKWMAVKCVHR 450 (884)
T ss_pred HHHHhhhCCCeecCCCCCcCCChHHHHHHHHHHHcCcHh-HH---hh----------CcEEeEeCCCCCCCeEEEEEEEc
Confidence 4333322211 24699999999987654210 00 00 00111223332221
Q ss_pred --CceEEEEcCe--EEEEeehhhhhhcCCC--CCh----hhHHHHHHHHHccCeEEEEEECC-----eEEEEEEeeCCCC
Q 003131 742 --RGIQCFISGK--QVLVGNRKLLNESGIT--IPD----HVESFVVELEESARTGILVAYDD-----NLIGVMGIADPVK 806 (845)
Q Consensus 742 --~gi~~~~~g~--~~~~g~~~~~~~~~~~--~~~----~~~~~~~~~~~~g~~~l~va~~~-----~~lG~~~~~D~lr 806 (845)
.+...++||+ .++.++..++..+|.. +++ .+.+..++++.+|+|++++||+. +|+|+++|+||+|
T Consensus 451 ~~~~~~~~~KGape~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~G~rvl~~A~~~~~~~l~~lGli~l~Dp~r 530 (884)
T TIGR01522 451 QDRSEMCFMKGAYEQVLKYCTYYQKKDGKTLTLTQQQRDVIQEEAAEMASAGLRVIAFASGPEKGQLTFLGLVGINDPPR 530 (884)
T ss_pred CCCeEEEEEeCChHHHHHhhhhhhhcCCCeeeCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCCeEEEEEEeccCcch
Confidence 2233444444 1111222222222322 222 23455667889999999999965 8999999999999
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 807 ~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++++++|+.||++||+++|+|||++.||.++|+++||.
T Consensus 531 ~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~ 568 (884)
T TIGR01522 531 PGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMP 568 (884)
T ss_pred hHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999996
No 16
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.5e-63 Score=539.62 Aligned_cols=466 Identities=23% Similarity=0.322 Sum_probs=352.0
Q ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHH--HHHHHHHHHhhhHHHH
Q 003131 348 KRFYTAAGRALRNGSTNMDVLVALGTSAAYFYSVGALLYGVVTGFWSPTYFETSAMLITFVL--FGKYLEILAKGKTSDA 425 (845)
Q Consensus 348 ~~~~~~a~~~l~~~~~~md~L~~l~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~~k~~~~ 425 (845)
+.|++--|++++.. +|+.|...+ ++++.+++..++....|++.+++++.+++ +-..+..|. .+.+
T Consensus 143 K~Fl~fvweA~qD~-----TLiIL~vaA-----vvSl~lgi~~~g~~~GW~eG~aI~~sV~~VV~VtA~nDy~---qe~Q 209 (1034)
T KOG0204|consen 143 KGFLRFVWEALQDV-----TLIILMVAA-----VVSLGLGIYTPGIEDGWIEGVAILLSVILVVLVTAVNDYR---QELQ 209 (1034)
T ss_pred ccHHHHHHHHhccc-----hHHHHHHHH-----HHHHhhhhccCCCCcccccchhheeeEEEEEEEeecchhH---Hhhh
Confidence 44556668888866 444333222 22333444444556788988777665432 222333343 3444
Q ss_pred HHHHHccC-CCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEeccee-eeccccCCcceeeeccC-
Q 003131 426 IKKLVELA-PATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVLKEI- 502 (845)
Q Consensus 426 l~~l~~~~-~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~G~~~-Vdes~LTGEs~pv~k~~- 502 (845)
+++|.+.. ..+..|+ ||| +.++|++.||+||||+.|+.||.|||||++++|+.+ +|||++||||.++.|..
T Consensus 210 F~~L~~~k~~~k~~Vi---R~G---~r~~isI~diVVGDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~~ 283 (1034)
T KOG0204|consen 210 FRKLQKEKRNIKFQVI---RGG---RRQQISIYDLVVGDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSLD 283 (1034)
T ss_pred hhhhhhhhhceEEEEE---ECC---EEEEEEEeeeeeccEEEeecCCccccceEEEeccceeEecccccCCCcceeccCC
Confidence 44444333 3356777 888 779999999999999999999999999999999877 99999999999999976
Q ss_pred -CCceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 003131 503 -NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGA 581 (845)
Q Consensus 503 -~~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~ 581 (845)
+.++++||.+.+|.+++.|+.+|.+|..|+++.++.+...+++|+|-++++++.....+.+++|++++++.......+.
T Consensus 284 ~dPfLlSGTkv~eGsgkMlVTaVGmnt~wG~~m~~l~~~~~e~tpLQ~kL~~lA~~Igk~Gl~~A~~~~~VL~~r~~~~~ 363 (1034)
T KOG0204|consen 284 KDPFLLSGTKVMEGSGKMLVTAVGMNTQWGIIMTLLGAGGEEETPLQVKLNGLATQIGKIGLLFAALTFIVLVIRFFIGK 363 (1034)
T ss_pred CCCeEeecceeecCcceEEEEEeeecchHhhHHHhhhcCCCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 5679999999999999999999999999999999999998999999999999999999999999998887655444332
Q ss_pred CC------CCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCC
Q 003131 582 YP------EQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKT 655 (845)
Q Consensus 582 ~~------~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKT 655 (845)
+. ..|.+.....+...|..++.++|+++|++||||++++++.++++|.+.+.++|..+++|++|..++||.|||
T Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~f~i~VTilVVAVPEGLPLAVTLsLAys~kkMmkD~~LVRhL~ACETMGsAT~ICsDKT 443 (1034)
T KOG0204|consen 364 TKIEGGTGTTWSDEYIQEFVKFFIIAVTILVVAVPEGLPLAVTLSLAYSMKKMMKDNNLVRHLDACETMGSATAICSDKT 443 (1034)
T ss_pred eecCCCCCccccHHHHHHHHHHhhheeEEEEEECCCCccHHHHHHHHHHHHHHhcchhHHHHhHHHhhcCCceEEEecCc
Confidence 21 233333455688889999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCeEEEEEEeccCCCh----------hhHHHHH-hh-----------------hhccCCChhHHHHHHHHhhcCc
Q 003131 656 GTLTQGRATVTTAKVFTKMDR----------GEFLTLV-AS-----------------AEASSEHPLAKAVVEYARHFHF 707 (845)
Q Consensus 656 GTLT~~~~~v~~~~~~~~~~~----------~~~~~~~-~~-----------------~~~~s~~p~~~al~~~~~~~~~ 707 (845)
||||+|+|.|.+.+..++..+ ..+..+. .. .....++|.++||+.+....+.
T Consensus 444 GTLT~N~MtVV~~~~~~~~~k~~~~~~~~l~~~~~~ll~~gI~~Nt~g~v~~~~~~g~~~~~~GspTE~AlL~f~~~LG~ 523 (1034)
T KOG0204|consen 444 GTLTTNRMTVVQSYIGSEHYKVNSPKSSNLPPSLLDLLLQGIAQNTTGSVVKPEKGGEQPEQLGSPTECALLGFGLKLGM 523 (1034)
T ss_pred CceEeeeEEEEeeeeccccccccCcccccCCHHHHHHHHHHHhhcCCCeEEecCCCCcCccccCCHHHHHHHHHHHHhCc
Confidence 999999999999876532211 1112111 11 1223578999999999987753
Q ss_pred CCCCCCCCCCCCCccccCCCccccccccccccCCC----------ceEEEEcCe-EEEEeehh-hhhhcCCCC------C
Q 003131 708 FDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGR----------GIQCFISGK-QVLVGNRK-LLNESGITI------P 769 (845)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----------gi~~~~~g~-~~~~g~~~-~~~~~~~~~------~ 769 (845)
-.+.... ...+..+.+|.+..++ +-..++||+ ++.+.+++ ++..+|... .
T Consensus 524 ~~~~~R~------------e~~v~kv~~FNS~kK~~gvvi~~~~~~~y~~~KGAsEiVL~~C~~~~~~~g~~~~~~e~~~ 591 (1034)
T KOG0204|consen 524 DFQDVRP------------EEKVVKVYPFNSVKKRMGVVIKLPDGGHYVHWKGASEIVLKSCEYYIDSNGELVPFNEDDR 591 (1034)
T ss_pred chHhhcc------------hhheeEEeccCcccceeeEEEEcCCCCeEEEEcChHHHHHHhhhheECCCCCEeeCCHHHH
Confidence 1111000 1223445555554332 312566665 33333333 333344321 1
Q ss_pred hhhHHHHHHHHHccCeEEEEEE---------------------CCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcC
Q 003131 770 DHVESFVVELEESARTGILVAY---------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTG 828 (845)
Q Consensus 770 ~~~~~~~~~~~~~g~~~l~va~---------------------~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTG 828 (845)
..+++.++.++.+|+|++++|| +++++|+++++||+|||++++|+.||+|||+|.|+||
T Consensus 592 ~~~~~~Ie~mA~~~LRti~lAy~df~~~~~~~~~~~~~~~~~~~lt~laivGIkDPvRPgV~~AV~~Cq~AGItVRMVTG 671 (1034)
T KOG0204|consen 592 KSFKDVIEPMASEGLRTICLAYRDFVAGPDEEPSWDNEELPEGGLTLLAIVGIKDPVRPGVPEAVQLCQRAGITVRMVTG 671 (1034)
T ss_pred HHHHHHHHHHHHhhhheeeEEeeccccCCCCCCCccccccCCCCeEEEEEeeccCCCCCCcHHHHHHHHHcCcEEEEEeC
Confidence 2356778899999999999999 2479999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCC
Q 003131 829 DNWRTAHAVAREVCVI 844 (845)
Q Consensus 829 D~~~tA~~iA~~~GI~ 844 (845)
||..||++||.+|||.
T Consensus 672 DNI~TAkAIA~eCGIL 687 (1034)
T KOG0204|consen 672 DNINTAKAIARECGIL 687 (1034)
T ss_pred CcHHHHHHHHHHcccc
Confidence 9999999999999996
No 17
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-63 Score=541.24 Aligned_cols=435 Identities=23% Similarity=0.327 Sum_probs=329.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccE
Q 003131 398 FETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADG 477 (845)
Q Consensus 398 ~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg 477 (845)
|+.+..|.+++.+......++++|+.+++++|.++.|+.++|+ |+| +.+.+++.+|||||||.++-||+||||.
T Consensus 78 ~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~---R~g---k~~~i~A~eLVPGDiV~l~vGDkVPADl 151 (972)
T KOG0202|consen 78 FDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVL---RSG---KLQHILARELVPGDIVELKVGDKIPADL 151 (972)
T ss_pred cccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEE---ecC---cccceehhccCCCCEEEEecCCccccce
Confidence 3344555555566666777888899999999999999999999 888 6799999999999999999999999999
Q ss_pred EEEeccee-eeccccCCcceeeeccC--------------CCceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhc
Q 003131 478 IVVWGTSY-VNESMVTGEAVPVLKEI--------------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM 542 (845)
Q Consensus 478 ~ll~G~~~-Vdes~LTGEs~pv~k~~--------------~~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~ 542 (845)
+|++-..+ ||||+|||||.|+.|.. .+.+|+||.+..|.++++|+.||.+|.+|+|.+.+++.+.
T Consensus 152 Rl~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~NiaFsGT~V~~G~a~GIVi~TG~nTeiG~I~~~m~~~e~ 231 (972)
T KOG0202|consen 152 RLIEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIAFSGTLVVAGRAKGIVIGTGLNTEIGKIFKMMQATES 231 (972)
T ss_pred eEEeeeeeeeecccccCCcccccccCccccCCCCCccccceeeEeecceeecCceeEEEEeccccchHHHHHHHHhccCC
Confidence 99998777 99999999999999943 2458999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCC--CCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHH
Q 003131 543 SKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGA--YPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTA 620 (845)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~ 620 (845)
.|+|+|+.+|++.+.+..++.++++.+++.. .+.+.. ....|+ ..+...|.+++++.+.++|++||+.+++.
T Consensus 232 ~kTPLqk~ld~~G~qLs~~is~i~v~v~~~n--ig~f~~p~~~g~~f----k~~~~~f~IaVsLAVAAIPEGLPaVvT~t 305 (972)
T KOG0202|consen 232 PKTPLQKKLDEFGKQLSKVISFICVGVWLLN--IGHFLDPVHGGSWF----KGALYYFKIAVSLAVAAIPEGLPAVVTTT 305 (972)
T ss_pred CCCcHHHHHHHHHHHHHHHheehhhhHHHhh--hhhhccccccccch----hchhhhhhHHHHHHHHhccCCCcchhhhh
Confidence 9999999999999999877666666555431 222110 011232 35778899999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCC--------------------------
Q 003131 621 VMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM-------------------------- 674 (845)
Q Consensus 621 ~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~-------------------------- 674 (845)
++.|.++|+|+++++|+..++|+||.+++||+|||||||+|+|.+.+++..+..
T Consensus 306 LALG~~rMakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~~~~~~~~~~f~~tg~ty~~~g~v~~~~~~ 385 (972)
T KOG0202|consen 306 LALGTRRMAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIPDGGTATVDEFNPTGTTYSPEGEVFKDGLY 385 (972)
T ss_pred HHHhHHHHHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEecccccccccccccCCceeCCCCceEecCcc
Confidence 999999999999999999999999999999999999999999999998875321
Q ss_pred ------Ch---hhHHHHHhhh-----hcc-------CCChhHHHHHHHHhhcCcCCCCCCCCCCCCCcc-ccCC-Cc-cc
Q 003131 675 ------DR---GEFLTLVASA-----EAS-------SEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSK-ESTG-SG-WL 730 (845)
Q Consensus 675 ------~~---~~~~~~~~~~-----~~~-------s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~ 730 (845)
.. .+++.+++.+ +.. .+.|.+.||...+++.++.+............. .+.. +. ..
T Consensus 386 ~~~~~~~~~~l~~l~~i~~lCNda~v~~~~~~~~~~~G~pTE~AL~vlaeKm~l~~~~~~~~s~~~~~~c~~~~~~~~~~ 465 (972)
T KOG0202|consen 386 EKDKAGDNDLLQELAEICALCNDATVEYNDADCYEKVGEPTEGALIVLAEKMGLPGTRSTNLSNEEASACNRVYSRLFKK 465 (972)
T ss_pred ccccccccHHHHHHHHHHHhhhhhhhhcCchhhHHhcCCchHHHHHHHHHHcCCCcchhhcccccccccchhHHHHhhhh
Confidence 01 1222322222 111 467999999999998876554311111100000 0000 00 00
Q ss_pred cccccccccCC------------CceEEEEcCeE-EEEeeh-hhhhhcCCC---CC----hhhHHHHHHHHHccCeEEEE
Q 003131 731 LDVSDFSALPG------------RGIQCFISGKQ-VLVGNR-KLLNESGIT---IP----DHVESFVVELEESARTGILV 789 (845)
Q Consensus 731 ~~~~~~~~~~g------------~gi~~~~~g~~-~~~g~~-~~~~~~~~~---~~----~~~~~~~~~~~~~g~~~l~v 789 (845)
....+|++..+ .+...++||+. -++..+ .+....|.. .. +.+.+...++..+|+|++++
T Consensus 466 ~~elpFssdrK~Msv~c~~~~~~~~~~~fvKGA~E~Vl~rcs~~~~~~g~~~~pLt~~~re~il~~~~~~g~~gLRvLal 545 (972)
T KOG0202|consen 466 IAELPFSSDRKSMSVKCSPAHGQSGYKMFVKGAPESVLERCSTYYGSDGQTKVPLTQASRETILANVYEMGSEGLRVLAL 545 (972)
T ss_pred eeEeecccccceEEEEEecCCCCccceEEecCChHHHHHhhhcEEccCCceeeeCcHHHHHHHHHHHHHHhhccceEEEE
Confidence 01112332221 23455556551 111211 222222211 21 22344566788999999999
Q ss_pred EE------------------------CCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 790 AY------------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 790 a~------------------------~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
|+ |++|+|++++.||+|+|++++|+.|+++||+|+|+||||++||.+||+++||.
T Consensus 546 A~~~~~~~~~~~~~l~~~s~~~~~E~~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~ 624 (972)
T KOG0202|consen 546 ASKDSPGQVPDDQDLNDTSNRATAESDLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIF 624 (972)
T ss_pred EccCCcccChhhhhhcccccccccccceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 87 56899999999999999999999999999999999999999999999999986
No 18
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=100.00 E-value=2.3e-61 Score=584.91 Aligned_cols=429 Identities=22% Similarity=0.290 Sum_probs=324.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHcc-CCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccC
Q 003131 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVEL-APATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLP 474 (845)
Q Consensus 396 ~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~-~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vP 474 (845)
.|++ ++++++++++...+..+++.++++++++|.+. .+..++|+ ||| ++++|++++|+|||+|.|++||+||
T Consensus 127 ~~~~-~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~Vi---RdG---~~~~I~~~~Lv~GDiV~l~~Gd~IP 199 (941)
T TIGR01517 127 GWIE-GVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVI---RGG---QEQQISIHDIVVGDIVSLSTGDVVP 199 (941)
T ss_pred chHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEE---ECC---EEEEEeHHHCCCCCEEEECCCCEec
Confidence 3444 44444444455566666677777777777654 46688888 888 7799999999999999999999999
Q ss_pred ccEEEEec-ceeeeccccCCcceeeeccCCCc--eeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHH
Q 003131 475 ADGIVVWG-TSYVNESMVTGEAVPVLKEINSP--VIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFA 551 (845)
Q Consensus 475 aDg~ll~G-~~~Vdes~LTGEs~pv~k~~~~~--v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~ 551 (845)
|||+|++| .+.||||+|||||.|+.|.+++. +|+||.+.+|.++++|++||.+|.+||+.+++++++ +++|+++.+
T Consensus 200 aD~~li~g~~l~VdES~LTGES~pv~K~~~~~n~v~~GT~v~~G~~~~iV~~tG~~T~~gki~~~~~~~~-~~t~l~~~~ 278 (941)
T TIGR01517 200 ADGVFISGLSLEIDESSITGESDPIKKGAPKDSFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRAEG-EDTPLQEKL 278 (941)
T ss_pred ccEEEEEcCcEEEEecccCCCCCcccccCCCCceEEeCCeEEeeEEEEEEEEeCCCcHHHHHHHhhccCC-CCCcHHHHH
Confidence 99999999 78899999999999999998876 999999999999999999999999999999998765 678999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCC--cCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHH
Q 003131 552 DFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQ--WLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGA 629 (845)
Q Consensus 552 ~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~ 629 (845)
+++++++.+++++++++++++|++...+...... .......++..++.+++++++++|||+|++++|++++.++.+|+
T Consensus 279 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~ma 358 (941)
T TIGR01517 279 SELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMM 358 (941)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999888888877543211100000 00011235778899999999999999999999999999999999
Q ss_pred hcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCC-C-----------hhhHHHHHhhhh----------
Q 003131 630 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM-D-----------RGEFLTLVASAE---------- 687 (845)
Q Consensus 630 ~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~-~-----------~~~~~~~~~~~~---------- 687 (845)
|+|+++|+++++|.||++|++|||||||||+|+|.|.+++..++. + ..+++..++.+.
T Consensus 359 k~~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~ 438 (941)
T TIGR01517 359 KDNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGEQRFNVRDVLRNVPKHVRNILVEGISLNSSSEEVVDRG 438 (941)
T ss_pred hCCCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEEecceEecCcccccCCHHHHHHHHHHHHhCCCCccccCCC
Confidence 999999999999999999999999999999999999998764321 0 011222222211
Q ss_pred ---ccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccccccccCC-Cc---------eEEEEcCe-EE
Q 003131 688 ---ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPG-RG---------IQCFISGK-QV 753 (845)
Q Consensus 688 ---~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~g---------i~~~~~g~-~~ 753 (845)
...+||++.|+++++.+.+..... . .. ........+|++..+ .+ +..++||+ +.
T Consensus 439 ~~~~~~g~p~e~All~~~~~~~~~~~~-~-~~----------~~~~~~~~pF~s~~k~msvv~~~~~~~~~~~~KGA~e~ 506 (941)
T TIGR01517 439 GKRAFIGSKTECALLGFLLLLGRDYQE-V-RA----------EEKVVKIYPFNSERKFMSVVVKHSGGKVREFRKGASEI 506 (941)
T ss_pred CccccCCCccHHHHHHHHHHcCCCHHH-H-Hh----------hchhccccccCCCCCeEEEEEEeCCCcEEEEEECChHH
Confidence 123678999999998765311000 0 00 001122234443222 22 34444444 22
Q ss_pred EEeehhhh-hhcCCCCC-----hhhHHHHHHHHHccCeEEEEEE----------------CCeEEEEEEeeCCCChhHHH
Q 003131 754 LVGNRKLL-NESGITIP-----DHVESFVVELEESARTGILVAY----------------DDNLIGVMGIADPVKREAAV 811 (845)
Q Consensus 754 ~~g~~~~~-~~~~~~~~-----~~~~~~~~~~~~~g~~~l~va~----------------~~~~lG~~~~~D~lr~~~~~ 811 (845)
+++.+..+ ..+|...+ +++++..++++.+|+|++++|| |++|+|+++|+||+|+|+++
T Consensus 507 il~~c~~~~~~~g~~~~~~~~~~~i~~~~~~~a~~G~Rvl~~A~~~~~~~~~~~~~~~e~~l~~lGli~~~Dplr~~~~~ 586 (941)
T TIGR01517 507 VLKPCRKRLDSNGEATPISDDKDRCADVIEPLASDALRTICLAYRDFAPEEFPRKDYPNGGLTLIGVVGIKDPLRPGVRE 586 (941)
T ss_pred HHHhhhHHhhcCCCcccCcHHHHHHHHHHHHHHhcCCEEEEEEEEecCccccccccccccCcEEEEEeeccCCCchhHHH
Confidence 22333322 12333222 2345566788999999999997 34899999999999999999
Q ss_pred HHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 812 VVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 812 ~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+|++||++||+++|+||||+.||.+||+++||.
T Consensus 587 aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~ 619 (941)
T TIGR01517 587 AVQECQRAGITVRMVTGDNIDTAKAIARNCGIL 619 (941)
T ss_pred HHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 999999999999999999999999999999996
No 19
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=100.00 E-value=2.2e-60 Score=543.40 Aligned_cols=379 Identities=31% Similarity=0.476 Sum_probs=337.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHc--cCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEec
Q 003131 405 ITFVLFGKYLEILAKGKTSDAIKKLVE--LAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 482 (845)
Q Consensus 405 ~~~~~~~~~l~~~~~~k~~~~l~~l~~--~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~G 482 (845)
+++++++.+++.+.++++.+.+++|.+ +.|..++++ |+| +++|++++|+|||+|.+++||+|||||+|++|
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~---r~g----~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g 75 (499)
T TIGR01494 3 LILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVL---RNG----WKEIPASDLVPGDIVLVKSGEIVPADGVLLSG 75 (499)
T ss_pred EEhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEE---ECC----eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEc
Confidence 345678999999999999999999998 899999998 666 47899999999999999999999999999999
Q ss_pred ceeeeccccCCcceeeeccCCCceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHh-hhHHHH
Q 003131 483 TSYVNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVA-SIFVPI 561 (845)
Q Consensus 483 ~~~Vdes~LTGEs~pv~k~~~~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 561 (845)
.+.||||+|||||.|+.|.+|+.+++||.+.+|.++++|+++|.+|..+++..++.+++..++++++..++++ .+++++
T Consensus 76 ~~~vdes~LTGEs~pv~k~~g~~v~~gs~~~~G~~~~~v~~~~~~s~~~~i~~~v~~~~~~k~~~~~~~~~~~~~~~~~~ 155 (499)
T TIGR01494 76 SCFVDESNLTGESVPVLKTAGDAVFAGTYVFNGTLIVVVSATGPNTFGGKIAVVVYTGFETKTPLQPKLDRLSDIIFILF 155 (499)
T ss_pred cEEEEcccccCCCCCeeeccCCccccCcEEeccEEEEEEEEeccccHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHHhcCeEEecchHH
Q 003131 562 VVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDAL 641 (845)
Q Consensus 562 ~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~ 641 (845)
+++++++++++|+..... ..+|..++.+++++++++|||+|++++|+++..+..+++++|+++|+++++
T Consensus 156 ~~~la~~~~~~~~~~~~~-----------~~~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~~gilvk~~~~l 224 (499)
T TIGR01494 156 VLLIALAVFLFWAIGLWD-----------PNSIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAKKGIVVRSLNAL 224 (499)
T ss_pred HHHHHHHHHHHHHHHHcc-----------cccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHCCcEEechhhh
Confidence 999999999888654210 014778899999999999999999999999999999999999999999999
Q ss_pred HhhcCCcEEEecCCCccccCCeEEEEEEeccCCChhhHHHHHhhhhccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCc
Q 003131 642 ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHS 721 (845)
Q Consensus 642 e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~ 721 (845)
|.||++|++|||||||||+|+|++.++++.+. +..++||+++|+++++++..
T Consensus 225 E~l~~v~~i~fDKTGTLT~~~~~v~~~~~~~~-------------~~~s~hp~~~ai~~~~~~~~--------------- 276 (499)
T TIGR01494 225 EELGKVDYICSDKTGTLTKNEMSFKKVSVLGG-------------EYLSGHPDERALVKSAKWKI--------------- 276 (499)
T ss_pred hhccCCcEEEeeCCCccccCceEEEEEEecCC-------------CcCCCChHHHHHHHHhhhcC---------------
Confidence 99999999999999999999999999876532 46789999999999886531
Q ss_pred cccCCCccccccccccccCCCceEEEEcC--eEEEEeehhhhhhcCCCCChhhHHHHHHHHHccCeEEEEEECCeEEEEE
Q 003131 722 KESTGSGWLLDVSDFSALPGRGIQCFISG--KQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVM 799 (845)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~g~gi~~~~~g--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~va~~~~~lG~~ 799 (845)
....+|++.+ +|+.+.+++ ..+.+|+++++.+.+.. +.+...++..+|.++++++++.+++|++
T Consensus 277 ---------~~~~~f~~~~-~~~~~~~~~~~~~~~~G~~~~i~~~~~~----~~~~~~~~~~~g~~~~~~a~~~~~~g~i 342 (499)
T TIGR01494 277 ---------LNVFEFSSVR-KRMSVIVRGPDGTYVKGAPEFVLSRVKD----LEEKVKELAQSGLRVLAVASKETLLGLL 342 (499)
T ss_pred ---------cceeccCCCC-ceEEEEEecCCcEEEeCCHHHHHHhhHH----HHHHHHHHHhCCCEEEEEEECCeEEEEE
Confidence 1233566666 577777764 57889999988664321 3334456778999999999999999999
Q ss_pred EeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 003131 800 GIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCV 843 (845)
Q Consensus 800 ~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI 843 (845)
.++|++|++++++|+.|+++|++++|+|||++.+|.++|+++||
T Consensus 343 ~l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi 386 (499)
T TIGR01494 343 GLEDPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI 386 (499)
T ss_pred EecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999997
No 20
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-61 Score=579.91 Aligned_cols=413 Identities=23% Similarity=0.320 Sum_probs=334.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEec
Q 003131 403 MLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 482 (845)
Q Consensus 403 ~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~G 482 (845)
.+++++.++..+..+++.|+.+.+++|.++.+..++|+ ||| ++++|++++|+|||||.+++||+||||++|+++
T Consensus 108 ~I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~---R~g---~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~ 181 (917)
T COG0474 108 VILLVVVINALLGFVQEYRAEKALEALKKMSSPKAKVL---RDG---KFVEIPASELVPGDIVLLEAGDVVPADLRLLES 181 (917)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEE---eCC---cEEEecHHHCCCCcEEEECCCCccccceEEEEe
Confidence 33444455555666777788889999999999999999 888 789999999999999999999999999999999
Q ss_pred ce-eeeccccCCcceeeeccC--------------CCceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChh
Q 003131 483 TS-YVNESMVTGEAVPVLKEI--------------NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPI 547 (845)
Q Consensus 483 ~~-~Vdes~LTGEs~pv~k~~--------------~~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~ 547 (845)
++ .||||+|||||.|+.|.+ .+.+|+||.+.+|++.+.|++||.+|.+|++..++......++|+
T Consensus 182 ~~l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~~~~t~l 261 (917)
T COG0474 182 SDLEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVKTPL 261 (917)
T ss_pred cCceEEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhccccccCCcH
Confidence 99 699999999999999953 477899999999999999999999999999999998887789999
Q ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHH
Q 003131 548 QKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGV 627 (845)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~ 627 (845)
|+.++++..++..+.++++++++++.++.+. ..|..++.+++++++.++|++||+.+.++++.+..+
T Consensus 262 ~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~l~va~IPegLp~~vti~la~g~~~ 328 (917)
T COG0474 262 QRKLNKLGKFLLVLALVLGALVFVVGLFRGG-------------NGLLESFLTALALAVAAVPEGLPAVVTIALALGAQR 328 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999988887744321 237889999999999999999999999999999999
Q ss_pred HHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEecc-CCChh-----------hHHHHHhhh---hcc---
Q 003131 628 GANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFT-KMDRG-----------EFLTLVASA---EAS--- 689 (845)
Q Consensus 628 ~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~-~~~~~-----------~~~~~~~~~---~~~--- 689 (845)
|+++++++|+++++|.||++|+||+|||||||+|+|+|.+++..+ ..+.+ +++..++.+ ...
T Consensus 329 mak~~~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~lc~~~~~~~~~ 408 (917)
T COG0474 329 MAKDNAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGGGKDIDDKDLKDSPALLRFLLAAALCNSVTPEKNG 408 (917)
T ss_pred HHhccchhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeCCCcccccccccccchHHHHHHHHHHhcCcccccccC
Confidence 999999999999999999999999999999999999999999884 21111 123322222 222
Q ss_pred ---CCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccccccccCCCceEEEE--cCe--EEEEeehhhhh
Q 003131 690 ---SEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFI--SGK--QVLVGNRKLLN 762 (845)
Q Consensus 690 ---s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~--~g~--~~~~g~~~~~~ 762 (845)
.++|++.||++++.+.+... ....... ........+|++..++.-...- +|+ .+..|+++.+.
T Consensus 409 ~~~~gdptE~Al~~~a~~~~~~~----~~~~~~~------~~~~~~~~PFdS~rKrMsviv~~~~~~~~~~~KGApe~il 478 (917)
T COG0474 409 WYQAGDPTEGALVEFAEKLGFSL----DLSGLEV------EYPILAEIPFDSERKRMSVIVKTDEGKYILFVKGAPEVIL 478 (917)
T ss_pred ceecCCccHHHHHHHHHhcCCcC----CHHHHhh------hcceeEEecCCCCceEEEEEEEcCCCcEEEEEcCChHHHH
Confidence 57999999999998875321 0000000 1122344566665544222221 121 34556666654
Q ss_pred hcC------C----CCChhhHHHHHHHHHccCeEEEEEE-----------------CCeEEEEEEeeCCCChhHHHHHHH
Q 003131 763 ESG------I----TIPDHVESFVVELEESARTGILVAY-----------------DDNLIGVMGIADPVKREAAVVVEG 815 (845)
Q Consensus 763 ~~~------~----~~~~~~~~~~~~~~~~g~~~l~va~-----------------~~~~lG~~~~~D~lr~~~~~~I~~ 815 (845)
+.. . +.+..+++..++++++|+|++++|| |+.|+|+++|+||||+|++++|+.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~glRvla~A~k~~~~~~~~~~~~~~E~dl~~lGl~g~~Dppr~~v~~aI~~ 558 (917)
T COG0474 479 ERCKSIGELEPLTEEGLRTLEEAVKELASEGLRVLAVAYKKLDRAEKDDEVDEIESDLVFLGLTGIEDPPREDVKEAIEE 558 (917)
T ss_pred HHhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchhhhhhccceeehhhhccCCCCccHHHHHHH
Confidence 311 1 1224466677889999999999987 468999999999999999999999
Q ss_pred HHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 816 LLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 816 L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
|+++||++|||||||++||++||++|||.
T Consensus 559 l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~ 587 (917)
T COG0474 559 LREAGIKVWMITGDHVETAIAIAKECGIE 587 (917)
T ss_pred HHHCCCcEEEECCCCHHHHHHHHHHcCCC
Confidence 99999999999999999999999999985
No 21
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=100.00 E-value=3.3e-59 Score=564.94 Aligned_cols=423 Identities=20% Similarity=0.257 Sum_probs=326.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEEE
Q 003131 400 TSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIV 479 (845)
Q Consensus 400 ~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~l 479 (845)
.+++++++++++..+..++++|+++++++|.++.+.+++|+ ||| ++++|++++|||||||.|++||+|||||+|
T Consensus 83 ~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~Vi---Rdg---~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rL 156 (1053)
T TIGR01523 83 EGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVI---RNG---KSDAIDSHDLVPGDICLLKTGDTIPADLRL 156 (1053)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE---eCC---eeeecCHhhCCCCCEEEECCCCEeeccEEE
Confidence 46677788888999999999999999999999999999999 888 779999999999999999999999999999
Q ss_pred Eecce-eeeccccCCcceeeeccCC---------------CceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhc-
Q 003131 480 VWGTS-YVNESMVTGEAVPVLKEIN---------------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM- 542 (845)
Q Consensus 480 l~G~~-~Vdes~LTGEs~pv~k~~~---------------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~- 542 (845)
++++. .||||+|||||.|+.|.+. +.+|+||.+.+|.++++|++||.+|.+|+|.+++.+...
T Consensus 157 i~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n~lf~GT~V~~G~g~~vVvatG~~T~~GkIa~~~~~~~~~ 236 (1053)
T TIGR01523 157 IETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAAGLQGDGGL 236 (1053)
T ss_pred EEeCceEEEchhhcCCCCceeccccccccccccCCcccCCCccccCceEEeeeEEEEEEEecCccHHHHHHHHHhhhhhc
Confidence 99865 5999999999999999642 468999999999999999999999999999999865431
Q ss_pred ----------------------------------cCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCC
Q 003131 543 ----------------------------------SKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLP 588 (845)
Q Consensus 543 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~ 588 (845)
.+||+|+.+++++.++..+.+++++++|+...+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpLq~~l~~l~~~l~~i~~~~~~~~~~~~~~~------------ 304 (1053)
T TIGR01523 237 FQRPEKDDPNKRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAAHKFD------------ 304 (1053)
T ss_pred cccccccccccchhhhcccccccccchhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------
Confidence 2489999999999988888777777666542210
Q ss_pred CCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEE
Q 003131 589 ENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTA 668 (845)
Q Consensus 589 ~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~ 668 (845)
.+...+.++++++++++|++||+.+.++++.+..+|+++++++|+++++|+||++++||+|||||||+|+|.|.++
T Consensus 305 ----~~~~~~~~av~l~Va~VPegLp~~vti~La~g~~rMak~~~lVr~L~avEtLG~vtvICsDKTGTLT~N~M~V~~i 380 (1053)
T TIGR01523 305 ----VDKEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQI 380 (1053)
T ss_pred ----hhHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCCEeccchhhhhccCccEEEecCcCccccceEEEEEE
Confidence 1234567789999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Eecc-----------CC-----------------------------------------C-------hhhHHHHHhhhh--
Q 003131 669 KVFT-----------KM-----------------------------------------D-------RGEFLTLVASAE-- 687 (845)
Q Consensus 669 ~~~~-----------~~-----------------------------------------~-------~~~~~~~~~~~~-- 687 (845)
+..+ ++ . ..+++..++.+.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~lcn~a 460 (1053)
T TIGR01523 381 WIPRFGTISIDNSDDAFNPNEGNVSGIPRFSPYEYSHNEAADQDILKEFKDELKEIDLPEDIDMDLFIKLLETAALANIA 460 (1053)
T ss_pred EEcCCceEEecCCCCCCCCcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHhccCC
Confidence 6421 00 0 011333333221
Q ss_pred -----------ccCCChhHHHHHHHHhhcCcCCC-----CCC---CCCC---CCCc--cccCCCccccccccccccCCCc
Q 003131 688 -----------ASSEHPLAKAVVEYARHFHFFDD-----PSL---NPDG---QSHS--KESTGSGWLLDVSDFSALPGRG 743 (845)
Q Consensus 688 -----------~~s~~p~~~al~~~~~~~~~~~~-----~~~---~~~~---~~~~--~~~~~~~~~~~~~~~~~~~g~g 743 (845)
...++|++.|++.++...+.... ... .... .... +............+|++..++.
T Consensus 461 ~~~~~~~~~~~~~~GdptE~ALl~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pFds~rK~m 540 (1053)
T TIGR01523 461 TVFKDDATDCWKAHGDPTEIAIHVFAKKFDLPHNALTGEEDLLKSNENDQSSLSQHNEKPGSAQFEFIAEFPFDSEIKRM 540 (1053)
T ss_pred eeeccCCCCceeeCcCccHHHHHHHHHHcCCCcccccchhhhhhhccccccccccccccccccccceEEEeccCCCCCeE
Confidence 11369999999999876653110 000 0000 0000 0000012223445666655543
Q ss_pred eEEEEc--Ce---EEEEeehhhhhhcCC-----------CCC----hhhHHHHHHHHHccCeEEEEEE------------
Q 003131 744 IQCFIS--GK---QVLVGNRKLLNESGI-----------TIP----DHVESFVVELEESARTGILVAY------------ 791 (845)
Q Consensus 744 i~~~~~--g~---~~~~g~~~~~~~~~~-----------~~~----~~~~~~~~~~~~~g~~~l~va~------------ 791 (845)
.....+ |. .+..|+++.+...+. ++. +.+.+..++++.+|+|++++||
T Consensus 541 svv~~~~~~~~~~~~~KGApe~il~~c~~~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~GlRvLa~A~r~l~~~~~~~~~ 620 (1053)
T TIGR01523 541 ASIYEDNHGETYNIYAKGAFERIIECCSSSNGKDGVKISPLEDCDRELIIANMESLAAEGLRVLAFASKSFDKADNNDDQ 620 (1053)
T ss_pred EEEEEeCCCCEEEEEEeCChHHHHHhhhHhhcCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEEEEEECCchhccchh
Confidence 333221 21 234576665433221 121 2244566789999999999986
Q ss_pred -------------CCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 792 -------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 792 -------------~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
|++|+|+++|+||+|++++++|+.||++||+++|+||||+.||.+||+++||.
T Consensus 621 ~~~~~~~~~~~e~~L~~~G~~~~~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~ 686 (1053)
T TIGR01523 621 LKNETLNRATAESDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGII 686 (1053)
T ss_pred hhccccchhhhccCCEEEEEEeeecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 34799999999999999999999999999999999999999999999999995
No 22
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=100.00 E-value=2.3e-59 Score=572.50 Aligned_cols=428 Identities=21% Similarity=0.257 Sum_probs=333.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEc--CCCcc
Q 003131 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVL--PGTKL 473 (845)
Q Consensus 396 ~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~--~G~~v 473 (845)
.||..+++++++++++.++..++++|+.+.++++.. .+..++|+ ||| ++++|++++|+|||+|.|+ +|++|
T Consensus 191 ~~~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~-~~~~v~V~---Rdg---~~~~I~s~eLvpGDiv~l~~~~g~~i 263 (1054)
T TIGR01657 191 EYYYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH-KPQSVIVI---RNG---KWVTIASDELVPGDIVSIPRPEEKTM 263 (1054)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCeeEEEE---ECC---EEEEEEcccCCCCCEEEEecCCCCEe
Confidence 466667777888888999999999999999999765 46788888 888 7799999999999999999 99999
Q ss_pred CccEEEEecceeeeccccCCcceeeeccCC------------------Cceeccceeec-------ceEEEEEEEecCcc
Q 003131 474 PADGIVVWGTSYVNESMVTGEAVPVLKEIN------------------SPVIGGTINLH-------GVLHIQATKVGSDA 528 (845)
Q Consensus 474 PaDg~ll~G~~~Vdes~LTGEs~pv~k~~~------------------~~v~aGt~~~~-------g~~~~~v~~~g~~t 528 (845)
||||+|++|++.||||+|||||.|+.|.+. +.+|+||.+.. |.+.++|++||.+|
T Consensus 264 PaD~~ll~g~~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T 343 (1054)
T TIGR01657 264 PCDSVLLSGSCIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFST 343 (1054)
T ss_pred cceEEEEeCcEEEecccccCCccceecccCCccccccccccccccccceEEEcCCEEEEEecCCCCCcEEEEEEeCCccc
Confidence 999999999999999999999999999762 24999999984 88999999999999
Q ss_pred HHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheee
Q 003131 529 VLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIA 608 (845)
Q Consensus 529 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~ 608 (845)
..|++.+.+...+..++++++.+.++..++. +++++.++++++.+... ..++...+.+++++++++
T Consensus 344 ~~G~i~~~i~~~~~~~~~~~~~~~~~~~~l~----~~a~i~~i~~~~~~~~~----------~~~~~~~~l~~l~iiv~~ 409 (1054)
T TIGR01657 344 SKGQLVRSILYPKPRVFKFYKDSFKFILFLA----VLALIGFIYTIIELIKD----------GRPLGKIILRSLDIITIV 409 (1054)
T ss_pred cchHHHHHhhCCCCCCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHHHhh
Confidence 9999999998887778888877666654443 33333333332222111 235778899999999999
Q ss_pred cccccchhhHHHHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCCC-------------
Q 003131 609 CPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD------------- 675 (845)
Q Consensus 609 ~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~------------- 675 (845)
+|++||++++++++.++.+++|+||+||++.++|.+|++|++|||||||||+|+|.|.+++..++..
T Consensus 410 vP~~LP~~~ti~l~~~~~rL~k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~~~~~~~~~~~~~~~~~~~~ 489 (1054)
T TIGR01657 410 VPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQGLSGNQEFLKIVTEDSSLK 489 (1054)
T ss_pred cCchHHHHHHHHHHHHHHHHHHCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEecccCccccccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999998653210
Q ss_pred hhhHHHHHhhhh-------ccCCChhHHHHHHHHhhcCcCCCCCCCCCCCC---CccccCCCccccccccccccCCCceE
Q 003131 676 RGEFLTLVASAE-------ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQS---HSKESTGSGWLLDVSDFSALPGRGIQ 745 (845)
Q Consensus 676 ~~~~~~~~~~~~-------~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~gi~ 745 (845)
...+....+.+. ...++|++.|+++++.+....+.......... ..........+....+|++..++.-.
T Consensus 490 ~~~~~~~~a~C~~~~~~~~~~~Gdp~E~al~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~il~~~pF~S~~krMsv 569 (1054)
T TIGR01657 490 PSITHKALATCHSLTKLEGKLVGDPLDKKMFEATGWTLEEDDESAEPTSILAVVRTDDPPQELSIIRRFQFSSALQRMSV 569 (1054)
T ss_pred chHHHHHHHhCCeeEEECCEEecCHHHHHHHHhCCCEEECCCCcccccccccceeccCCCceEEEEEEEeecCCCCEEEE
Confidence 112233333322 23589999999998754321100000000000 00000012223445577776655332
Q ss_pred E-EEc--Ce--EEEEeehhhhhhcCC--CCChhhHHHHHHHHHccCeEEEEEE---------------------CCeEEE
Q 003131 746 C-FIS--GK--QVLVGNRKLLNESGI--TIPDHVESFVVELEESARTGILVAY---------------------DDNLIG 797 (845)
Q Consensus 746 ~-~~~--g~--~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~l~va~---------------------~~~~lG 797 (845)
. ... +. .+..|+++.+.+... ..|+++.+..++++.+|+|++++|| |++|+|
T Consensus 570 vv~~~~~~~~~~~~KGApE~Il~~c~~~~~p~~~~~~~~~~a~~G~RVLalA~k~l~~~~~~~~~~~~r~~~E~~L~flG 649 (1054)
T TIGR01657 570 IVSTNDERSPDAFVKGAPETIQSLCSPETVPSDYQEVLKSYTREGYRVLALAYKELPKLTLQKAQDLSRDAVESNLTFLG 649 (1054)
T ss_pred EEEEcCCCeEEEEEECCHHHHHHHcCCcCCChhHHHHHHHHHhcCCEEEEEEEeecCccchhhhhhccHHHHhcCceEEE
Confidence 2 222 22 567799998877544 5688888899999999999999997 357999
Q ss_pred EEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 798 VMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 798 ~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+++|+||+||+++++|+.||++||+++|+||||+.||.+||+++||.
T Consensus 650 li~~~d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 650 FIVFENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIV 696 (1054)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999995
No 23
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=100.00 E-value=3.6e-59 Score=566.97 Aligned_cols=416 Identities=21% Similarity=0.253 Sum_probs=335.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCcc
Q 003131 397 YFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPAD 476 (845)
Q Consensus 397 ~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaD 476 (845)
+|..+++++++++++.++..+++.|+.+.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.|++||+||||
T Consensus 103 ~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~Vi---Rdg---~~~~I~~~~lv~GDiv~l~~Gd~IPaD 176 (997)
T TIGR01106 103 NLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVI---RDG---EKMSINAEQVVVGDLVEVKGGDRIPAD 176 (997)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEE---ECC---EEEEeeHHHCCCCCEEEECCCCEEeee
Confidence 34445667777788999999999999999999999999999999 888 779999999999999999999999999
Q ss_pred EEEEecc-eeeeccccCCcceeeeccCCC----------ceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCC
Q 003131 477 GIVVWGT-SYVNESMVTGEAVPVLKEINS----------PVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKA 545 (845)
Q Consensus 477 g~ll~G~-~~Vdes~LTGEs~pv~k~~~~----------~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~ 545 (845)
|+|++|+ +.||||+|||||.|+.|.+++ .+|+||.+.+|.+.++|++||.+|.+|++.+++++.+.+++
T Consensus 177 ~~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i~~~~~~~~~~~~ 256 (997)
T TIGR01106 177 LRIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASLASGLENGKT 256 (997)
T ss_pred EEEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHHHhhhhhcccCCC
Confidence 9999997 479999999999999998764 69999999999999999999999999999999998888899
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHH
Q 003131 546 PIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVAT 625 (845)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~ 625 (845)
|+++.++++++++.+++++++++.+++|++.+ ..|..++.+++++++++|||+|+++++++++.+.
T Consensus 257 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~ 322 (997)
T TIGR01106 257 PIAIEIEHFIHIITGVAVFLGVSFFILSLILG--------------YTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTA 322 (997)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhhcCCccchHHHHHHHHHHH
Confidence 99999999999999999888888777765432 2466788899999999999999999999999999
Q ss_pred HHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccC--------------CC-----hhhHHHHHhhh
Q 003131 626 GVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK--------------MD-----RGEFLTLVASA 686 (845)
Q Consensus 626 ~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~--------------~~-----~~~~~~~~~~~ 686 (845)
.+|+++|+++|+++++|.||++|++|||||||||+|+|+|.+++..+. .+ .+.++.+++.+
T Consensus 323 ~~m~~~~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~alc 402 (997)
T TIGR01106 323 KRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGVSFDKSSATWLALSRIAGLC 402 (997)
T ss_pred HHHHHCCcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEEECCeEEecCCccCCCCccCCcccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999874321 00 01344444443
Q ss_pred hc----------------cCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccccccccCCCceEEEEc-
Q 003131 687 EA----------------SSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFIS- 749 (845)
Q Consensus 687 ~~----------------~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~- 749 (845)
+. ..++|++.|+++++........ .. .. ........+|++..++.......
T Consensus 403 n~~~~~~~~~~~~~~~~~~~gdp~E~ALl~~a~~~~~~~~------~~---~~---~~~~v~~~pF~s~rK~m~~v~~~~ 470 (997)
T TIGR01106 403 NRAVFKAGQENVPILKRAVAGDASESALLKCIELCLGSVM------EM---RE---RNPKVVEIPFNSTNKYQLSIHENE 470 (997)
T ss_pred CCCeeccccCCCcccccccCcChHHHHHHHHHHHhCCCHH------HH---Hh---hCceeEEeccCCCCceEEEEEecc
Confidence 21 1357999999999875421000 00 00 01112234555544433322211
Q ss_pred ---C-e--EEEEeehhhhhh-------cCCC--CCh----hhHHHHHHHHHccCeEEEEEE-------------------
Q 003131 750 ---G-K--QVLVGNRKLLNE-------SGIT--IPD----HVESFVVELEESARTGILVAY------------------- 791 (845)
Q Consensus 750 ---g-~--~~~~g~~~~~~~-------~~~~--~~~----~~~~~~~~~~~~g~~~l~va~------------------- 791 (845)
+ . .+..|+++.+.. +|.. +++ .+++...+++.+|+|++++||
T Consensus 471 ~~~~~~~~~~~KGApe~Il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~GlRvla~A~k~l~~~~~~~~~~~~~~~~ 550 (997)
T TIGR01106 471 DPRDPRHLLVMKGAPERILERCSSILIHGKEQPLDEELKEAFQNAYLELGGLGERVLGFCHLYLPDEQFPEGFQFDTDDV 550 (997)
T ss_pred CCCCceEEEEEeCChHHHHHHhhHHhcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEEeecCcccccccccccchhh
Confidence 1 1 244566654433 2222 222 244556778999999999986
Q ss_pred -----CCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 792 -----DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 792 -----~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
|++|+|+++++||+|+|++++|++|+++||+++|+|||++.||.++|+++||.
T Consensus 551 ~~~e~~L~flGli~i~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~ 608 (997)
T TIGR01106 551 NFPTDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 608 (997)
T ss_pred hccccCcEEEEEEeccCCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 34699999999999999999999999999999999999999999999999995
No 24
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=100.00 E-value=1.4e-58 Score=558.44 Aligned_cols=437 Identities=21% Similarity=0.266 Sum_probs=335.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCc
Q 003131 396 TYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPA 475 (845)
Q Consensus 396 ~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPa 475 (845)
.|++ ++++++++++...+..++++|+++.+++|.++.|.+++|+ ||| ++++|++++|+|||+|.|++||+|||
T Consensus 35 ~~~~-~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~Vi---Rdg---~~~~I~~~~Lv~GDiv~l~~Gd~IPa 107 (917)
T TIGR01116 35 AFVE-PFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVL---RDG---RWSVIKAKDLVPGDIVELAVGDKVPA 107 (917)
T ss_pred cHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE---ECC---EEEEEEHHHCCCCCEEEECCCCEeec
Confidence 4554 5666677778888899999999999999999999999999 888 77999999999999999999999999
Q ss_pred cEEEEecc-eeeeccccCCcceeeeccCC-------------CceeccceeecceEEEEEEEecCccHHHHHHHHHHhhh
Q 003131 476 DGIVVWGT-SYVNESMVTGEAVPVLKEIN-------------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQ 541 (845)
Q Consensus 476 Dg~ll~G~-~~Vdes~LTGEs~pv~k~~~-------------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~ 541 (845)
||+|++|+ +.||||+|||||.|+.|.++ +.+|+||.+.+|.+.++|++||.+|.+|+|.+.++.++
T Consensus 108 D~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~gki~~~~~~~~ 187 (917)
T TIGR01116 108 DIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIGKIRDEMRAAE 187 (917)
T ss_pred cEEEEEecceEEEcccccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHHHHHHHhhccC
Confidence 99999996 67999999999999999875 78999999999999999999999999999999999998
Q ss_pred ccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHH
Q 003131 542 MSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAV 621 (845)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~ 621 (845)
.+++|+|+.+++++.++.++.+++++++|+++........+...|. ..+...+..++++++++|||+|++++++++
T Consensus 188 ~~~t~lq~~l~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~l~v~~iP~~Lp~~vti~l 263 (917)
T TIGR01116 188 QEDTPLQKKLDEFGELLSKVIGLICILVWVINIGHFNDPALGGGWI----QGAIYYFKIAVALAVAAIPEGLPAVITTCL 263 (917)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH----HHHHHHHHHHHhhhhhccccccHHHHHHHH
Confidence 8999999999999999998888888777765533211000011111 234556778889999999999999999999
Q ss_pred HHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCC--------------C------------
Q 003131 622 MVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM--------------D------------ 675 (845)
Q Consensus 622 ~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~--------------~------------ 675 (845)
+.+.++|+++|+++|+++++|+||++|++|||||||||+|+|+|.+++..++. +
T Consensus 264 ~~~~~~m~~~~ilvk~~~~iE~lg~v~~ic~DKTGTLT~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (917)
T TIGR01116 264 ALGTRKMAKKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVALDPSSSSLNEFCVTGTTYAPEGGVIKDDGPV 343 (917)
T ss_pred HHHHHHHHHCCcEecCcHHHHhccCceEEEecCCccccCCeEEEEEEEecCCcccccceEEecCCccCCCccccccCCcc
Confidence 99999999999999999999999999999999999999999999998764310 0
Q ss_pred -------hhhHHHHHhhhhc-------------cCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCcc----ccCCCcccc
Q 003131 676 -------RGEFLTLVASAEA-------------SSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSK----ESTGSGWLL 731 (845)
Q Consensus 676 -------~~~~~~~~~~~~~-------------~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 731 (845)
..+++..++.+.. ..++|++.|+++++.+.+................ .........
T Consensus 344 ~~~~~~~~~~l~~~~~lc~~~~~~~~~~~~~~~~~gdp~E~ALl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (917)
T TIGR01116 344 AGGQDAGLEELATIAALCNDSSLDFNERKGVYEKVGEATEAALKVLVEKMGLPATKNGVSSKRRPALGCNSVWNDKFKKL 423 (917)
T ss_pred cccchHHHHHHHHHHHhcCCCeeeccccCCceeeccChhHHHHHHHHHHcCCCchhcccccccccccchhHHHHhhccee
Confidence 0122332222221 1369999999999887653211110000000000 000011123
Q ss_pred ccccccccCCCceEEEEc--Ce--EEEEeehhhhhhc--------CC--CCCh----hhHHHHHHHHH-ccCeEEEEEE-
Q 003131 732 DVSDFSALPGRGIQCFIS--GK--QVLVGNRKLLNES--------GI--TIPD----HVESFVVELEE-SARTGILVAY- 791 (845)
Q Consensus 732 ~~~~~~~~~g~gi~~~~~--g~--~~~~g~~~~~~~~--------~~--~~~~----~~~~~~~~~~~-~g~~~l~va~- 791 (845)
...+|++..++. ...++ +. .+..|+++.+... +. ++.+ .+.+..++++. +|+|++++||
T Consensus 424 ~~~pF~s~rK~m-sviv~~~~~~~~~~KGApe~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~~GlRvl~~A~k 502 (917)
T TIGR01116 424 ATLEFSRDRKSM-SVLCKPSTGNKLFVKGAPEGVLERCTHILNGDGRAVPLTDKMKNTILSVIKEMGTTKALRCLALAFK 502 (917)
T ss_pred eecccChhhCeE-EEEEeeCCcEEEEEcCChHHHHHhccceecCCCCeeeCCHHHHHHHHHHHHHHHhhcCCeEEEEEEE
Confidence 344565544332 22222 21 3444666654432 22 1222 24455678889 9999999986
Q ss_pred ----------------------CCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 792 ----------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 792 ----------------------~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
|++|+|+++|+||+|++++++|+.||++||+++|+|||+++||.++|+++||.
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~e~~l~~lGl~~~~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~ 577 (917)
T TIGR01116 503 DIPDPREEDLLSDPANFEAIESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIF 577 (917)
T ss_pred ECCccccccccccchhhhhhcCCcEEEEEeeeeCCCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCC
Confidence 23789999999999999999999999999999999999999999999999995
No 25
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-54 Score=474.01 Aligned_cols=441 Identities=22% Similarity=0.311 Sum_probs=329.0
Q ss_pred HHHHHHHHHhhhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeec
Q 003131 377 YFYSVGALLYGVVTGFWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDA 456 (845)
Q Consensus 377 ~~~s~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~ 456 (845)
|++.++++++ |....|+++++.++++.+.+.++..+..++.+..+++|.+.. ..++|+ ||| .+++|++
T Consensus 198 YlFQ~fSv~l-----W~~d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~rlr~mv~~~-~~V~V~---R~g---~~~ti~S 265 (1140)
T KOG0208|consen 198 YLFQAFSVAL-----WLADSYYYYAFCIVIISVYSIVLSVYETRKQSIRLRSMVKFT-CPVTVI---RDG---FWETVDS 265 (1140)
T ss_pred HHHHhHHhhh-----hhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEE---ECC---EEEEEec
Confidence 4555555555 345677778888888888999999999999999999887643 567777 788 7899999
Q ss_pred CCcCCCCEEEEcC-CCccCccEEEEecceeeeccccCCcceeeeccCC-------------------Cceeccceee---
Q 003131 457 LLIQSGDTLKVLP-GTKLPADGIVVWGTSYVNESMVTGEAVPVLKEIN-------------------SPVIGGTINL--- 513 (845)
Q Consensus 457 ~~l~~GDii~v~~-G~~vPaDg~ll~G~~~Vdes~LTGEs~pv~k~~~-------------------~~v~aGt~~~--- 513 (845)
+||+||||+.+.+ |-..|||++|++|+|.||||||||||+|+.|.+- +.+|+||.+.
T Consensus 266 ~eLVPGDil~i~~~~~~~PcDa~Li~g~civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~~~rh~lfcGT~vlq~r 345 (1140)
T KOG0208|consen 266 SELVPGDILYIPPPGKIMPCDALLISGDCIVNESMLTGESVPVTKTPLPMGTDSLDSITISMSTNSRHTLFCGTKVLQAR 345 (1140)
T ss_pred cccccccEEEECCCCeEeecceEEEeCcEEeecccccCCcccccccCCccccccCcCeeechhhcCcceeeccceEEEee
Confidence 9999999999999 9999999999999999999999999999999763 3489999876
Q ss_pred ---cceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCC
Q 003131 514 ---HGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPEN 590 (845)
Q Consensus 514 ---~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~ 590 (845)
++.+.+.|++||.+|..|++++.+..++ |.....-+-+-.|+....++|++.|++..+.... .
T Consensus 346 ~~~g~~v~a~V~RTGF~T~KGqLVRsilyPk----P~~fkfyrds~~fi~~l~~ia~~gfiy~~i~l~~----------~ 411 (1140)
T KOG0208|consen 346 AYLGGPVLAMVLRTGFSTTKGQLVRSILYPK----PVNFKFYRDSFKFILFLVIIALIGFIYTAIVLNL----------L 411 (1140)
T ss_pred cCCCCceEEEEEeccccccccHHHHhhcCCC----CcccHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH----------c
Confidence 4789999999999999999998886654 2333333334445555555566555543332211 1
Q ss_pred CchHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEe
Q 003131 591 GTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKV 670 (845)
Q Consensus 591 ~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~ 670 (845)
+.++...+++++.++.+..|+|||.+++++...+++|+.|+||+|.+|+.+...|++|++|||||||||++.+.+..+.+
T Consensus 412 g~~~~~iiirsLDliTi~VPPALPAaltvG~~~a~~RLkkk~IfCisP~rIn~~G~i~~~cFDKTGTLTEdGLDl~gv~~ 491 (1140)
T KOG0208|consen 412 GVPLKTIIIRSLDLITIVVPPALPAALTVGIIYAQSRLKKKGIFCISPQRINLCGKLNLVCFDKTGTLTEDGLDLWGVVP 491 (1140)
T ss_pred CCCHHHHhhhhhcEEEEecCCCchhhhhHHHHHHHHHHHhcCeEEcCccceeecceeeEEEEcCCCcccccceeEEEEEe
Confidence 34677789999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCC-Ch---------------------------hhHHHHHhhhhcc---------CCChhHHHHHHHHhhcCcCC---C
Q 003131 671 FTKM-DR---------------------------GEFLTLVASAEAS---------SEHPLAKAVVEYARHFHFFD---D 710 (845)
Q Consensus 671 ~~~~-~~---------------------------~~~~~~~~~~~~~---------s~~p~~~al~~~~~~~~~~~---~ 710 (845)
..+. +. ..+.. +.+.++ .++|++..+++...+...-. +
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--a~atCHSL~~v~g~l~GDPLdlkmfe~t~w~~ee~~~~~ 569 (1140)
T KOG0208|consen 492 VERNVDDGPELKVVTEDSLQLFYKLSLRSSSLPMGNLVA--AMATCHSLTLVDGTLVGDPLDLKMFESTGWVYEEADIED 569 (1140)
T ss_pred ccccccccchhhhhhhhhccceeeccccccCCchHHHHH--HHhhhceeEEeCCeeccCceeeeeeeccceEEEeccccc
Confidence 4321 00 01111 111222 25677666666544331100 0
Q ss_pred CCCCCCCC-------------CCccccCC-CccccccccccccCCC-ceEEEEcCe----EEEEeehhhhhhcCC--CCC
Q 003131 711 PSLNPDGQ-------------SHSKESTG-SGWLLDVSDFSALPGR-GIQCFISGK----QVLVGNRKLLNESGI--TIP 769 (845)
Q Consensus 711 ~~~~~~~~-------------~~~~~~~~-~~~~~~~~~~~~~~g~-gi~~~~~g~----~~~~g~~~~~~~~~~--~~~ 769 (845)
......+. ....+... ...+....+|.+.-.| .+.+...|. .+..|+++.+.+... ++|
T Consensus 570 ~~~~~~~~~~p~v~~p~~~~~~~~t~~~~~~~si~k~feF~S~LrRMSVIv~~~~e~~~~~ftKGaPE~I~~ic~p~tvP 649 (1140)
T KOG0208|consen 570 EATREFNTLIPTVVRPPENAFNQSTECGEGEISIVKQFEFSSALRRMSVIVSTGGEDKMMVFTKGAPESIAEICKPETVP 649 (1140)
T ss_pred hhhhhhCCccCCEeCCCcccccCCCcCCCcceEEEEecccchhhheEEEEEecCCCCceEeeccCCHHHHHHhcCcccCC
Confidence 00000000 00000000 1112223344443333 333333332 456699998887544 579
Q ss_pred hhhHHHHHHHHHccCeEEEEEE---------------------CCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcC
Q 003131 770 DHVESFVVELEESARTGILVAY---------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTG 828 (845)
Q Consensus 770 ~~~~~~~~~~~~~g~~~l~va~---------------------~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTG 828 (845)
.++++.+++|..+|+|++++|+ |++|+|++.|+|+||++++.+|+.|++++||++|+||
T Consensus 650 ~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVmeNkLK~~T~~VI~eL~~AnIRtVMcTG 729 (1140)
T KOG0208|consen 650 ADYQEVLKEYTHQGFRVIALASKELETSTLQKAQKLSRDTVESNLEFLGLIVMENKLKEETKRVIDELNRANIRTVMCTG 729 (1140)
T ss_pred ccHHHHHHHHHhCCeEEEEEecCccCcchHHHHhhccHhhhhccceeeEEEEeecccccccHHHHHHHHhhcceEEEEcC
Confidence 9999999999999999999987 6799999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCC
Q 003131 829 DNWRTAHAVAREVCVID 845 (845)
Q Consensus 829 D~~~tA~~iA~~~GI~~ 845 (845)
||..||..|||+|||.+
T Consensus 730 DNllTaisVakeCgmi~ 746 (1140)
T KOG0208|consen 730 DNLLTAISVAKECGMIE 746 (1140)
T ss_pred CchheeeehhhcccccC
Confidence 99999999999999963
No 26
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=100.00 E-value=1.6e-49 Score=487.64 Aligned_cols=434 Identities=17% Similarity=0.209 Sum_probs=317.8
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCC-CceeeeEEeecCCcCCCCEEEEcCCCc
Q 003131 394 SPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKV-GKCIEEREIDALLIQSGDTLKVLPGTK 472 (845)
Q Consensus 394 ~~~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~-g~~~~~~~i~~~~l~~GDii~v~~G~~ 472 (845)
..+++...++++++..++.++|.+.++|+++.++ ++.++|+ |+ | +++++++++|+|||+|.|++||+
T Consensus 50 ~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~n------~~~~~v~---~~~~---~~~~i~~~~l~~GDiv~l~~g~~ 117 (1057)
T TIGR01652 50 RGTSIVPLAFVLIVTAIKEAIEDIRRRRRDKEVN------NRLTEVL---EGHG---QFVEIPWKDLRVGDIVKVKKDER 117 (1057)
T ss_pred ccHhHHhHHHHHHHHHHHHHHHHHHHHHhHHHHh------CcEEEEE---CCCC---cEEEeeeecccCCCEEEEcCCCc
Confidence 3455556666677778999999999998887654 3688888 65 6 56899999999999999999999
Q ss_pred cCccEEEEe-----cceeeeccccCCcceeeeccCC--------------------------------------------
Q 003131 473 LPADGIVVW-----GTSYVNESMVTGEAVPVLKEIN-------------------------------------------- 503 (845)
Q Consensus 473 vPaDg~ll~-----G~~~Vdes~LTGEs~pv~k~~~-------------------------------------------- 503 (845)
||||++|++ |.+.||||+|||||.|+.|.+.
T Consensus 118 iPaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~ 197 (1057)
T TIGR01652 118 IPADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDDIKNFSGEIECEQPNASLYSFQGNMTINGDRQYP 197 (1057)
T ss_pred ccceEEEEeccCCCceEEEEeeccCCeecceEeecchhhhccCChhhHhhceEEEEEcCCCCcceEEEEEEEECCCCccc
Confidence 999999998 7789999999999999988631
Q ss_pred ----Cceeccceeec-ceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q 003131 504 ----SPVIGGTINLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGV 578 (845)
Q Consensus 504 ----~~v~aGt~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~ 578 (845)
+.+++||.+.+ |++.+.|++||.+|.+++. ....+.+++++++.++++..+++.+.++++++++++..++..
T Consensus 198 l~~~N~l~rGs~l~nt~~~~gvVvyTG~~Tk~~~n---~~~~~~k~s~le~~ln~~~~~l~~~~i~l~~i~~i~~~~~~~ 274 (1057)
T TIGR01652 198 LSPDNILLRGCTLRNTDWVIGVVVYTGHDTKLMRN---ATQAPSKRSRLEKELNFLIIILFCLLFVLCLISSVGAGIWND 274 (1057)
T ss_pred CCHHHhHhcCCEecCCCeEEEEEEEEchhhhhhhc---CCCCcccccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHheec
Confidence 34678888888 9999999999999988653 344566789999999999988887777777766665333211
Q ss_pred cCCCCCCcCC-------CCCchHHHHHHHHhhhheeecccccchhhHHHHHHHH------HHHHhc----CeEEecchHH
Q 003131 579 LGAYPEQWLP-------ENGTHFVFALMFSISVVVIACPCALGLATPTAVMVAT------GVGANN----GVLIKGGDAL 641 (845)
Q Consensus 579 ~~~~~~~~~~-------~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~------~~~~~~----gilvk~~~~~ 641 (845)
. .....|.. .....+...+..++.++...+|.+|+..+.++..... .+|.++ ++++|+.+.+
T Consensus 275 ~-~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~L~~~~IPisL~v~l~l~~~~~~~~i~~D~~m~~~~~~~~~~vr~~~~~ 353 (1057)
T TIGR01652 275 A-HGKDLWYIRLDVSERNAAANGFFSFLTFLILFSSLIPISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLN 353 (1057)
T ss_pred c-cCCCccceecCcccccchhHHHHHHHHHHHHHhhhcceeeeehHHHHHHHHHHHHhhhhhhhccccCCcceeecCCCh
Confidence 0 11112311 0012355577788899999999999999999988888 677663 5999999999
Q ss_pred HhhcCCcEEEecCCCccccCCeEEEEEEeccC-----CC-----------------------------------------
Q 003131 642 ERAQKIKYVIFDKTGTLTQGRATVTTAKVFTK-----MD----------------------------------------- 675 (845)
Q Consensus 642 e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~-----~~----------------------------------------- 675 (845)
|.||++++||+|||||||+|+|.+++++..+. ..
T Consensus 354 E~LG~v~~I~sDKTGTLT~N~M~~~~~~i~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1057)
T TIGR01652 354 EELGQVEYIFSDKTGTLTQNIMEFKKCSIAGVSYGDGFTEIKDAIRERLGSYVENENSMLVESKGFTFVDPRLVDLLKTN 433 (1057)
T ss_pred HHhcCeeEEEEcCCCceeeeeEEEEEEEECCEEecCCcchHHHHhhhcccccccccccccccccccccCcHHHHHhhhcC
Confidence 99999999999999999999999999864210 00
Q ss_pred ------hhhHHHHHhhhh--------c-------cCCChhHHHHHHHHhhcCcCCCCCCCCC-CCC-CccccCCCccccc
Q 003131 676 ------RGEFLTLVASAE--------A-------SSEHPLAKAVVEYARHFHFFDDPSLNPD-GQS-HSKESTGSGWLLD 732 (845)
Q Consensus 676 ------~~~~~~~~~~~~--------~-------~s~~p~~~al~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~ 732 (845)
..+++..++.+. . .+.+|.+.|++++++..++....+.... ... ..........+..
T Consensus 434 ~~~~~~~~~~l~~l~lC~~v~~~~~~~~~~~~~y~~~sp~E~ALl~~a~~~g~~~~~~~~~~~~~~i~~~~~~~~~~il~ 513 (1057)
T TIGR01652 434 KPNAKRINEFFLALALCHTVVPEFNDDGPEEITYQAASPDEAALVKAARDVGFVFFERTPKSISLLIEMHGETKEYEILN 513 (1057)
T ss_pred CchhHHHHHHHHHHHhcCcccccccCCCCCceEEEccCCcHHHHHHHHHHCCCEEEEecCCceEEEEEeCCCEEEEEEEE
Confidence 012222222211 1 1468999999999987764221111100 000 0000001233445
Q ss_pred cccccccCCCceEEEEc---Ce--EEEEeehhhhhhcCC----CCChhhHHHHHHHHHccCeEEEEEE------------
Q 003131 733 VSDFSALPGRGIQCFIS---GK--QVLVGNRKLLNESGI----TIPDHVESFVVELEESARTGILVAY------------ 791 (845)
Q Consensus 733 ~~~~~~~~g~gi~~~~~---g~--~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~l~va~------------ 791 (845)
..+|++..++. .+.++ |. .+..|+++.+..... ..++...+.+++++.+|+|++++|+
T Consensus 514 ~~pF~s~rKrm-Sviv~~~~~~~~l~~KGA~e~il~~~~~~~~~~~~~~~~~~~~~a~~GlRtL~~A~k~l~~~e~~~~~ 592 (1057)
T TIGR01652 514 VLEFNSDRKRM-SVIVRNPDGRIKLLCKGADTVIFKRLSSGGNQVNEETKEHLENYASEGLRTLCIAYRELSEEEYEEWN 592 (1057)
T ss_pred ecccCCCCCeE-EEEEEeCCCeEEEEEeCcHHHHHHHhhccchhHHHHHHHHHHHHHHcCCcEEEEEEEECCHHHHHHHH
Confidence 56777766553 22222 22 345577665544221 1234456678899999999999986
Q ss_pred --------------------------CCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 792 --------------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 792 --------------------------~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
|++|+|+++++|+||++++++|+.||++||++||+|||+++||++||++|||.
T Consensus 593 ~~~~~a~~~~~~r~~~~~~~~~~iE~~L~~lG~~gieD~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii 671 (1057)
T TIGR01652 593 EEYNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLL 671 (1057)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhcCEEEEEEEEhhhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCC
Confidence 55899999999999999999999999999999999999999999999999986
No 27
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-47 Score=398.03 Aligned_cols=408 Identities=28% Similarity=0.365 Sum_probs=323.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHccCCC-eEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEec
Q 003131 404 LITFVLFGKYLEILAKGKTSDAIKKLVELAPA-TALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVWG 482 (845)
Q Consensus 404 i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~-~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~G 482 (845)
+.+.+++..+-|..++.|...+-..|++.+.+ .++++. .+| ..+.+++.+|+.||+|.|+.||.||+||.|++|
T Consensus 72 L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l~--~~g---~~~~v~st~Lk~gdiV~V~age~IP~DGeVIeG 146 (681)
T COG2216 72 LWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLR--ADG---SIEMVPATELKKGDIVLVEAGEIIPSDGEVIEG 146 (681)
T ss_pred HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhc--CCC---CeeeccccccccCCEEEEecCCCccCCCeEEee
Confidence 33345788899999998888777777665554 455552 346 679999999999999999999999999999999
Q ss_pred ceeeeccccCCcceeeeccCC---CceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHH
Q 003131 483 TSYVNESMVTGEAVPVLKEIN---SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFV 559 (845)
Q Consensus 483 ~~~Vdes~LTGEs~pv~k~~~---~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (845)
.+.||||.+||||-||.|+.| +.|-.||.+.+.+++++++....+|++.|++.+++.++.+|+|.+--+..+..-+.
T Consensus 147 ~asVdESAITGESaPViresGgD~ssVtGgT~v~SD~l~irita~pG~sFlDrMI~LVEgA~R~KTPNEIAL~iLL~~LT 226 (681)
T COG2216 147 VASVDESAITGESAPVIRESGGDFSSVTGGTRVLSDWLKIRITANPGETFLDRMIALVEGAERQKTPNEIALTILLSGLT 226 (681)
T ss_pred eeecchhhccCCCcceeeccCCCcccccCCcEEeeeeEEEEEEcCCCccHHHHHHHHhhchhccCChhHHHHHHHHHHHH
Confidence 999999999999999999998 67999999999999999999999999999999999999999998765444332222
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHHhcCeEEecch
Q 003131 560 PIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGD 639 (845)
Q Consensus 560 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~~gilvk~~~ 639 (845)
.+++ ++. .-.|.+..+.+ .. ...+...+++++..+|-.++--++.-=..++.|+.+.+++.+++.
T Consensus 227 liFL-~~~--~Tl~p~a~y~~----------g~--~~~i~~LiALlV~LIPTTIGgLLsAIGIAGMdRv~~~NViA~SGR 291 (681)
T COG2216 227 LIFL-LAV--ATLYPFAIYSG----------GG--AASVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVTQFNVIATSGR 291 (681)
T ss_pred HHHH-HHH--HhhhhHHHHcC----------CC--CcCHHHHHHHHHHHhcccHHHHHHHhhhhhhhHhhhhceeecCcc
Confidence 1111 111 11122211110 00 012445677888888988887777666778999999999999999
Q ss_pred HHHhhcCCcEEEecCCCccccCCeEEEEEEeccCCChhhHHHHHhhhhccCCChhHHHHHHHHhhcCcCCCCCCCCCCCC
Q 003131 640 ALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQS 719 (845)
Q Consensus 640 ~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~ 719 (845)
++|.+|.+|+++.|||||+|-|+-.-.++++.++.+.+++...+.......+.|-.++|++.++..+.... .+...
T Consensus 292 AVEaaGDvdtliLDKTGTIT~GnR~A~~f~p~~gv~~~~la~aa~lsSl~DeTpEGrSIV~LA~~~~~~~~----~~~~~ 367 (681)
T COG2216 292 AVEAAGDVDTLLLDKTGTITLGNRQASEFIPVPGVSEEELADAAQLASLADETPEGRSIVELAKKLGIELR----EDDLQ 367 (681)
T ss_pred hhhhcCCccEEEecccCceeecchhhhheecCCCCCHHHHHHHHHHhhhccCCCCcccHHHHHHHhccCCC----ccccc
Confidence 99999999999999999999999999999999999999999888888888889999999999988752111 00000
Q ss_pred CccccCCCccccccccccccCCC-ceEEEEcCeEEEEeehh----hhhhcCCCCChhhHHHHHHHHHccCeEEEEEECCe
Q 003131 720 HSKESTGSGWLLDVSDFSALPGR-GIQCFISGKQVLVGNRK----LLNESGITIPDHVESFVVELEESARTGILVAYDDN 794 (845)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~g~-gi~~~~~g~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~l~va~~~~ 794 (845)
. -.+..+|+..... |+.. -+|.++..|+.. ++.+.+..+|.+++...++.+..|.+++.|..|++
T Consensus 368 -------~--~~~fvpFtA~TRmSGvd~-~~~~~irKGA~dai~~~v~~~~g~~p~~l~~~~~~vs~~GGTPL~V~~~~~ 437 (681)
T COG2216 368 -------S--HAEFVPFTAQTRMSGVDL-PGGREIRKGAVDAIRRYVRERGGHIPEDLDAAVDEVSRLGGTPLVVVENGR 437 (681)
T ss_pred -------c--cceeeecceecccccccC-CCCceeecccHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCceEEEECCE
Confidence 0 0233344433221 2211 123567777644 55667778899999999999999999999999999
Q ss_pred EEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 003131 795 LIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVID 845 (845)
Q Consensus 795 ~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~~ 845 (845)
++|.+.++|-+||+.+|-+.+||++|||++|+||||+.||.+||+|.|+++
T Consensus 438 ~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDd 488 (681)
T COG2216 438 ILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDD 488 (681)
T ss_pred EEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchh
Confidence 999999999999999999999999999999999999999999999999874
No 28
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-49 Score=416.43 Aligned_cols=415 Identities=20% Similarity=0.294 Sum_probs=332.5
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCC
Q 003131 392 FWSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGT 471 (845)
Q Consensus 392 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~ 471 (845)
+.+++|-+ ...+..+++++..+....+..+-+....|..-...++.|+ ||| ++.++++.+||||||+.++.|+
T Consensus 92 ~~~~DW~D-F~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVl---RDG---kw~E~eAs~lVPGDIlsik~Gd 164 (942)
T KOG0205|consen 92 GRPPDWQD-FVGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVL---RDG---KWSEQEASILVPGDILSIKLGD 164 (942)
T ss_pred CCCcchhh-hhhhheeeeecceeeeeeccccchHHHHHHhccCcccEEe---ecC---eeeeeeccccccCceeeeccCC
Confidence 44556665 3455566667777777777778888888877777788888 899 7799999999999999999999
Q ss_pred ccCccEEEEeccee-eeccccCCcceeeeccCCCceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHH
Q 003131 472 KLPADGIVVWGTSY-VNESMVTGEAVPVLKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKF 550 (845)
Q Consensus 472 ~vPaDg~ll~G~~~-Vdes~LTGEs~pv~k~~~~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~ 550 (845)
+||||++|++|+-+ ||+|.|||||.|+.|++|+.+|+||.+..|++.++|++||.+|++|+-..++.. .....-+|+.
T Consensus 165 IiPaDaRLl~gD~LkiDQSAlTGESLpvtKh~gd~vfSgSTcKqGE~eaVViATg~~TF~GkAA~LVds-t~~~GHFqkV 243 (942)
T KOG0205|consen 165 IIPADARLLEGDPLKIDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKV 243 (942)
T ss_pred EecCccceecCCccccchhhhcCCccccccCCCCceecccccccceEEEEEEEeccceeehhhHHhhcC-CCCcccHHHH
Confidence 99999999999976 999999999999999999999999999999999999999999999999999977 5566788888
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheee-cccccchhhHHHHHHHHHHHH
Q 003131 551 ADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIA-CPCALGLATPTAVMVATGVGA 629 (845)
Q Consensus 551 ~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~-~P~~L~la~p~~~~~~~~~~~ 629 (845)
+..+..+++..+.+-.++.+++.+... .-.+.-....+.++++. +|.++|..+++.++++..+++
T Consensus 244 Lt~IGn~ci~si~~g~lie~~vmy~~q--------------~R~~r~~i~nLlvllIGgiPiamPtVlsvTMAiGs~rLa 309 (942)
T KOG0205|consen 244 LTGIGNFCICSIALGMLIEITVMYPIQ--------------HRLYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLS 309 (942)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhhhhhh--------------hhhhhhhhhheheeeecccccccceeeeehhhHHHHHHH
Confidence 888888766554443333333222211 11223344556666666 999999999999999999999
Q ss_pred hcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEE--E-EeccCCChhhHHHHHhhhh-ccCCChhHHHHHHHHhhc
Q 003131 630 NNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTT--A-KVFTKMDRGEFLTLVASAE-ASSEHPLAKAVVEYARHF 705 (845)
Q Consensus 630 ~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~--~-~~~~~~~~~~~~~~~~~~~-~~s~~p~~~al~~~~~~~ 705 (845)
++|.++|+..++|.++.+|++|+|||||||.|+++|.+ + +...+.+.++++-.++.+. ....+.++.|++......
T Consensus 310 qqgAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~~~L~A~rAsr~en~DAID~A~v~~L~dP 389 (942)
T KOG0205|consen 310 QQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDDVLLTAARASRKENQDAIDAAIVGMLADP 389 (942)
T ss_pred hcccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHHHHHHHHHHhhhcChhhHHHHHHHhhcCH
Confidence 99999999999999999999999999999999999998 5 4456778888776666554 345678999998765432
Q ss_pred CcCCCCCCCCCCCCCccccCCCccccccccccccCCCceEEEEc--Ce--EEEEeehhhhhh---cCCCCChhhHHHHHH
Q 003131 706 HFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGRGIQCFIS--GK--QVLVGNRKLLNE---SGITIPDHVESFVVE 778 (845)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~--g~--~~~~g~~~~~~~---~~~~~~~~~~~~~~~ 778 (845)
++....+...++.+|....++--..+++ |. +...|.+.++-+ ..-++|+...+.+.+
T Consensus 390 ----------------Keara~ikevhF~PFnPV~Krta~ty~d~dG~~~r~sKGAPeqil~l~~~~~~i~~~vh~~id~ 453 (942)
T KOG0205|consen 390 ----------------KEARAGIKEVHFLPFNPVDKRTALTYIDPDGNWHRVSKGAPEQILKLCNEDHDIPERVHSIIDK 453 (942)
T ss_pred ----------------HHHhhCceEEeeccCCccccceEEEEECCCCCEEEecCCChHHHHHHhhccCcchHHHHHHHHH
Confidence 1111122334555666666554444443 43 566788887644 334678888888999
Q ss_pred HHHccCeEEEEEEC-------------CeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 779 LEESARTGILVAYD-------------DNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 779 ~~~~g~~~l~va~~-------------~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++++|+|.++||+. .+++|++-+-||+|.++.++|.+-...|++|.|+|||....++..++++|+-
T Consensus 454 ~AeRGlRSLgVArq~v~e~~~~~~g~pw~~~gllp~fdpprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmg 532 (942)
T KOG0205|consen 454 FAERGLRSLAVARQEVPEKTKESPGGPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMG 532 (942)
T ss_pred HHHhcchhhhhhhhccccccccCCCCCcccccccccCCCCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhccc
Confidence 99999999999973 2799999999999999999999999999999999999999999999999873
No 29
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-49 Score=432.68 Aligned_cols=426 Identities=20% Similarity=0.255 Sum_probs=319.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccE
Q 003131 398 FETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADG 477 (845)
Q Consensus 398 ~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg 477 (845)
...+++++.++.+...+.++++.|..+.++.+.++.|..++|+ ||| +...+..++|++||++.++-|++||||.
T Consensus 126 ly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~Vi---Rdg---~k~~i~~eelVvGD~v~vk~GdrVPADi 199 (1019)
T KOG0203|consen 126 LYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVI---RDG---EKMTINAEELVVGDLVEVKGGDRVPADI 199 (1019)
T ss_pred eEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheee---ecc---eeEEechhhcccccceeeccCCccccee
Confidence 3335555555666677888899999999999999999999999 898 7799999999999999999999999999
Q ss_pred EEEeccee-eeccccCCcceeeeccCC----------CceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCCh
Q 003131 478 IVVWGTSY-VNESMVTGEAVPVLKEIN----------SPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAP 546 (845)
Q Consensus 478 ~ll~G~~~-Vdes~LTGEs~pv~k~~~----------~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~ 546 (845)
+++++... +|+|+|||||.|..+.+. +.-|.+|.+++|.+++.|.+||.+|.+|+|..+-..-...++|
T Consensus 200 Riis~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~st~~veG~~~givi~tGd~Tv~G~ia~l~~~~~~~~t~ 279 (1019)
T KOG0203|consen 200 RIISATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTGRGIVIATGDRTVMGRIASLASGLEDGKTP 279 (1019)
T ss_pred EEEEecceeEeccccccccCCccCCccccccCchhheeeeeeeeEEecceEEEEEEecCCceEEeehhhhhccCCCCCCc
Confidence 99999876 999999999999988652 4578899999999999999999999999999999888889999
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHH
Q 003131 547 IQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATG 626 (845)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~ 626 (845)
+++..+++..+.....+++++..|+.....+ ..|..++.+.+.++++..|.+|+..++..+....+
T Consensus 280 ~~~ei~~fi~~it~vAi~~~i~fF~~~~~~g--------------y~~l~avv~~i~iivAnvPeGL~~tvTv~Ltltak 345 (1019)
T KOG0203|consen 280 IAKEIEHFIHIITGVAIFLGISFFILALILG--------------YEWLRAVVFLIGIIVANVPEGLLATVTVCLTLTAK 345 (1019)
T ss_pred chhhhhchHHHHHHHHHHHHHHHHHHHHhhc--------------chhHHHhhhhheeEEecCcCCccceehhhHHHHHH
Confidence 9999999988887777777776665544432 25778888899999999999999999999999999
Q ss_pred HHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCCC-------------------hhhHHHHHhhhh
Q 003131 627 VGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKMD-------------------RGEFLTLVASAE 687 (845)
Q Consensus 627 ~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~-------------------~~~~~~~~~~~~ 687 (845)
+|+++++++|+.++.|.+|...+||.|||||||+|+|.|.+++..+.+. -.++.+++..+.
T Consensus 346 rMa~Knc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw~d~~i~~~d~~~~~~~~~~~~~~~~~~~l~r~~~lCn 425 (1019)
T KOG0203|consen 346 RMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLWFDNQIHEADTTEDQSGQSFDKSSATFIALSRIATLCN 425 (1019)
T ss_pred HHhhceeEEeeeeheeecccceeEeecceeeEEecceEEEeeccCCceeeeechhhhhcccccccCchHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999988654321 112333332221
Q ss_pred cc----------------CCChhHHHHHHHHhhcCcC-CCCCCCCCCC-CCccccCCCccccccccccccCCCceEEEEc
Q 003131 688 AS----------------SEHPLAKAVVEYARHFHFF-DDPSLNPDGQ-SHSKESTGSGWLLDVSDFSALPGRGIQCFIS 749 (845)
Q Consensus 688 ~~----------------s~~p~~~al~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~gi~~~~~ 749 (845)
.. .+++.+.||++++...... ...+...... +....+. +.....+...+.-........+|
T Consensus 426 ~a~~~~gq~dvPv~kk~v~G~~se~ALlk~~e~~~~~~~~~R~~~~kv~eipfNSt-~Kyqlsih~~~d~~~~~~~l~mK 504 (1019)
T KOG0203|consen 426 RAVFKPGQDDVPVLKRDVAGDASEVALLKFIELILGSVMELRERNPKVAEIPFNST-NKYQLSIHETEDPSDPRFLLVMK 504 (1019)
T ss_pred cceecccccCCceeeeeccCCHHHHHHHHHHHHhcchHHHHHHhhHHhhcCCcccc-cceEEEEEecCCCCCccceeeec
Confidence 11 4678899999887543110 0000000000 0000000 00000111111101122333445
Q ss_pred Ce-EEEEeehhhhhhcCCCCChh------hHHHHHHHHHccCeEEEEEE------------------------CCeEEEE
Q 003131 750 GK-QVLVGNRKLLNESGITIPDH------VESFVVELEESARTGILVAY------------------------DDNLIGV 798 (845)
Q Consensus 750 g~-~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~l~va~------------------------~~~~lG~ 798 (845)
|+ +.++-++..+.-+|.+.|.+ +.+...++...|.|++++++ ++.|+|+
T Consensus 505 Gape~il~~CSTi~i~g~e~pld~~~~~~f~~ay~~lg~~GerVlgF~~~~l~~~~~p~~~~f~~d~~n~p~~nl~FlGl 584 (1019)
T KOG0203|consen 505 GAPERILDRCSTILINGEEKPLDEKLKEAFQEAYLELGGLGERVLGFCDLELPDEKFPRGFQFDTDDVNFPTDNLRFLGL 584 (1019)
T ss_pred CChHHHHhhccceeecCCCCCcCHHHHHHHHHHHHHhhhcchHHHHHHHHhcchhcCCCceEeecCCCCCcchhccccch
Confidence 54 22223333333334443322 33344455566777765543 5689999
Q ss_pred EEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 799 MGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 799 ~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+++.||+|..+++++.+||.+|||++|+|||++.||+++|+++||.
T Consensus 585 ~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi 630 (1019)
T KOG0203|consen 585 ISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGII 630 (1019)
T ss_pred hhccCCCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeee
Confidence 9999999999999999999999999999999999999999999974
No 30
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=1.2e-45 Score=447.91 Aligned_cols=436 Identities=16% Similarity=0.154 Sum_probs=304.8
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCcc
Q 003131 394 SPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKL 473 (845)
Q Consensus 394 ~~~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~v 473 (845)
...++...++++++..++..+|.+.++|+++.++ ++.++++ ++| .++++++++|+|||+|.|++||+|
T Consensus 136 ~~t~~~PL~~vl~v~~ike~~Ed~~r~k~d~~~N------~~~~~v~---~~~---~~~~i~~~~i~vGDiv~v~~ge~i 203 (1178)
T PLN03190 136 RGASILPLAFVLLVTAVKDAYEDWRRHRSDRIEN------NRLAWVL---VDD---QFQEKKWKDIRVGEIIKIQANDTL 203 (1178)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc------CcEEEEE---ECC---eEEEEeHHHCCCCCEEEECCCCEe
Confidence 3445556677777888999999999999998765 3678888 677 678899999999999999999999
Q ss_pred CccEEEEe-----cceeeeccccCCcceeeeccCCC--------------------------------------------
Q 003131 474 PADGIVVW-----GTSYVNESMVTGEAVPVLKEINS-------------------------------------------- 504 (845)
Q Consensus 474 PaDg~ll~-----G~~~Vdes~LTGEs~pv~k~~~~-------------------------------------------- 504 (845)
||||+|++ |.+.||+|+|||||.|+.|.+++
T Consensus 204 PaD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~ 283 (1178)
T PLN03190 204 PCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLSKIPEKEKINGLIKCEKPNRNIYGFQANMEVDGKRLSLGPS 283 (1178)
T ss_pred eeeEEEEeccCCCceEEEEccccCCeeeeeEecccchhhhcchhhhhceEEEEEeCCCccceeEEEEEEECCCcccCCcc
Confidence 99999998 88999999999999999996542
Q ss_pred -ceeccceeec-ceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003131 505 -PVIGGTINLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAY 582 (845)
Q Consensus 505 -~v~aGt~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~ 582 (845)
.++.|+.+.+ .++.++|++||.+|... .....+..+++++++.++++..+++.+.+++++++++...++......
T Consensus 284 n~llRG~~LrnT~~i~GvVVYTG~dTK~~---~N~~~~~~K~S~le~~~N~~vi~l~~i~~~l~~i~~i~~~~~~~~~~~ 360 (1178)
T PLN03190 284 NIILRGCELKNTAWAIGVAVYCGRETKAM---LNNSGAPSKRSRLETRMNLEIIILSLFLIALCTIVSVCAAVWLRRHRD 360 (1178)
T ss_pred ceeeccceecCCceEEEEEEEechhhhHh---hcCCCCCCCccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 1223333332 37999999999999742 222334467899999999999888877777777766553222110000
Q ss_pred C---CCcCCC-----------CCc----hHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHHhc----------CeE
Q 003131 583 P---EQWLPE-----------NGT----HFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANN----------GVL 634 (845)
Q Consensus 583 ~---~~~~~~-----------~~~----~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~~----------gil 634 (845)
. -.|... ... .+...+...+.++-..+|.+|...+.+........+.+. ++.
T Consensus 361 ~~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~lil~~~~IPISL~Vtleivk~~qa~~I~~D~~m~~~~~~~~~~ 440 (1178)
T PLN03190 361 ELDTIPFYRRKDFSEGGPKNYNYYGWGWEIFFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDDQMYDEASNSRFQ 440 (1178)
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhhcceeeeeeHHHHHHHHHHHHHhhhhcccccCCCcce
Confidence 0 011100 000 112233344556568899999999999986645555432 378
Q ss_pred EecchHHHhhcCCcEEEecCCCccccCCeEEEEEEecc------C------------------------C----------
Q 003131 635 IKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFT------K------------------------M---------- 674 (845)
Q Consensus 635 vk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~------~------------------------~---------- 674 (845)
+|+.+..|.||+|++||+|||||||+|+|.++++...+ . .
T Consensus 441 vr~snl~EeLGqV~yIfSDKTGTLT~N~M~fk~~~i~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (1178)
T PLN03190 441 CRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSDGRTPTQNDHAGYSVEVDGKILRPKMKVKVDPQLLELS 520 (1178)
T ss_pred eccCcchhhhccceEEEEcCCCccccceEEEEEEEECCEEcccccccchhhhhccccccccccccccccccCCHHHHhhh
Confidence 99999999999999999999999999999999986521 0 0
Q ss_pred ----C-h-----hhHHHHHhhhh-------------------ccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccC
Q 003131 675 ----D-R-----GEFLTLVASAE-------------------ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKEST 725 (845)
Q Consensus 675 ----~-~-----~~~~~~~~~~~-------------------~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (845)
. . .+++...+.+. ..+.+|.+.||+.+|...|+....+....-........
T Consensus 521 ~~~~~~~~~~~i~~fl~~lalChtv~~~~~~~~~~~~~~~~~Y~a~SPdE~ALv~~a~~~G~~l~~r~~~~i~i~~~~~~ 600 (1178)
T PLN03190 521 KSGKDTEEAKHVHDFFLALAACNTIVPIVVDDTSDPTVKLMDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGER 600 (1178)
T ss_pred hccccchhhHHHHHHHHHHHhcCCceeeccCCCCCccccceEEecCCCcHHHHHHHHHHCCCeEecccCCeEEEeeccce
Confidence 0 0 12333222211 12348999999999998875322221111000001111
Q ss_pred CCccccccccccccCCCceEEEE--cCe--EEEEeehhhhhhcCC-----CCChhhHHHHHHHHHccCeEEEEEE-----
Q 003131 726 GSGWLLDVSDFSALPGRGIQCFI--SGK--QVLVGNRKLLNESGI-----TIPDHVESFVVELEESARTGILVAY----- 791 (845)
Q Consensus 726 ~~~~~~~~~~~~~~~g~gi~~~~--~g~--~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~l~va~----- 791 (845)
....+....+|++..++.-...- +|. -+..|+++.+..... ..++...+.+++++.+|+|++++||
T Consensus 601 ~~~~il~~~pF~S~rKrMSvIv~~~~~~~~l~~KGA~e~il~~~~~~~~~~~~~~~~~~l~~~a~~GlRtL~lA~k~l~~ 680 (1178)
T PLN03190 601 QRFNVLGLHEFDSDRKRMSVILGCPDKTVKVFVKGADTSMFSVIDRSLNMNVIRATEAHLHTYSSLGLRTLVVGMRELND 680 (1178)
T ss_pred ecceeEEEecccccccEEEEEEEcCCCcEEEEEecCcHHHHHhhcccccchhHHHHHHHHHHHHhcCCceEEEEEEeCCH
Confidence 13344556677776655322221 122 234566665443211 1234466778899999999999875
Q ss_pred ---------------------------------CCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q 003131 792 ---------------------------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA 838 (845)
Q Consensus 792 ---------------------------------~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA 838 (845)
|++++|+++++|++|++++++|+.|+++||++||+|||+++||++||
T Consensus 681 ~e~~~~~~~~~~a~~~~~~r~~~l~~~~~~iE~dL~~lG~~~~~D~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA 760 (1178)
T PLN03190 681 SEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILGASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIG 760 (1178)
T ss_pred HHHhhHHHHHHHhhhhhhhhHHHHHhhHHhhhcCcEEEEEEEEecCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999
Q ss_pred HHcCCC
Q 003131 839 REVCVI 844 (845)
Q Consensus 839 ~~~GI~ 844 (845)
++|||.
T Consensus 761 ~s~~Ll 766 (1178)
T PLN03190 761 YSSKLL 766 (1178)
T ss_pred HHhCCC
Confidence 999985
No 31
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-46 Score=408.68 Aligned_cols=424 Identities=20% Similarity=0.214 Sum_probs=297.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcC---CC
Q 003131 395 PTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLP---GT 471 (845)
Q Consensus 395 ~~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~---G~ 471 (845)
++||+++..-++++..-+.--.+++-|+...++++ ...|....|. |++ +|+.+.++||.|||+|.|.. ..
T Consensus 214 DeyWYySlFtLfMli~fE~tlV~Qrm~~lse~R~M-g~kpy~I~v~---R~k---KW~~l~seeLlPgDvVSI~r~~ed~ 286 (1160)
T KOG0209|consen 214 DEYWYYSLFTLFMLIAFEATLVKQRMRTLSEFRTM-GNKPYTINVY---RNK---KWVKLMSEELLPGDVVSIGRGAEDS 286 (1160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCceEEEEE---ecC---cceeccccccCCCceEEeccCcccC
Confidence 45665554444444333334445555555556655 3355667777 777 67999999999999999987 56
Q ss_pred ccCccEEEEecceeeeccccCCcceeeeccC-----------------CCceeccceee-------------cceEEEEE
Q 003131 472 KLPADGIVVWGTSYVNESMVTGEAVPVLKEI-----------------NSPVIGGTINL-------------HGVLHIQA 521 (845)
Q Consensus 472 ~vPaDg~ll~G~~~Vdes~LTGEs~pv~k~~-----------------~~~v~aGt~~~-------------~g~~~~~v 521 (845)
.||||.+|++|+|.|||+||||||.|..|.+ ...+|+||.++ +|.+.+.|
T Consensus 287 ~vPCDllLL~GsciVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d~k~hVlfGGTkivQht~p~~~slk~pDggc~a~V 366 (1160)
T KOG0209|consen 287 HVPCDLLLLRGSCIVNEAMLTGESVPLMKESIELRDSDDILDIDRDDKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYV 366 (1160)
T ss_pred cCCceEEEEecceeechhhhcCCCccccccccccCChhhhcccccccceEEEEcCceEEEecCCccccccCCCCCeEEEE
Confidence 7999999999999999999999999999965 12489999875 58899999
Q ss_pred EEecCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHH
Q 003131 522 TKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFS 601 (845)
Q Consensus 522 ~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (845)
++||.+|.-|++.+.+.-..++-|.-.+ -+.+|+.+.+++|++.. |+.+.... .+...+-+.-+.-.
T Consensus 367 lrTGFeTSQGkLvRtilf~aervTaNn~----Etf~FILFLlVFAiaAa--~Yvwv~Gs-------kd~~RsrYKL~LeC 433 (1160)
T KOG0209|consen 367 LRTGFETSQGKLVRTILFSAERVTANNR----ETFIFILFLLVFAIAAA--GYVWVEGS-------KDPTRSRYKLFLEC 433 (1160)
T ss_pred EeccccccCCceeeeEEecceeeeeccH----HHHHHHHHHHHHHHHhh--heEEEecc-------cCcchhhhheeeee
Confidence 9999999999988776554433332222 22233333333333322 22211000 01112334455566
Q ss_pred hhhheeecccccchhhHHHHHHHHHHHHhcCeEEecchHHHhhcCCcEEEecCCCccccCCeEEEEEEeccCC-------
Q 003131 602 ISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKIKYVIFDKTGTLTQGRATVTTAKVFTKM------- 674 (845)
Q Consensus 602 i~vlv~~~P~~L~la~p~~~~~~~~~~~~~gilvk~~~~~e~lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~------- 674 (845)
+.++...+|+-||+-+++|.-.++..++|.|++|..|-++.-+|++|++|||||||||+..|.|.++.-....
T Consensus 434 ~LIlTSVvPpELPmELSmAVNsSL~ALak~~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~~~~~~~~~~~ 513 (1160)
T KOG0209|consen 434 TLILTSVVPPELPMELSMAVNSSLIALAKLGVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGLSADEGALTPA 513 (1160)
T ss_pred eEEEeccCCCCCchhhhHHHHHHHHHHHHhceeecCccccccCCceeEEEecCCCccccccEEEEecccccCCcccccch
Confidence 7778888999999999999999999999999999999999999999999999999999999999998653221
Q ss_pred ---Chhh--HHHHHhhh---h-ccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccccccccCCC-ce
Q 003131 675 ---DRGE--FLTLVASA---E-ASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGR-GI 744 (845)
Q Consensus 675 ---~~~~--~~~~~~~~---~-~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-gi 744 (845)
..+. ++..+.++ + .-.++|+++|.+++..|.....+....++... ....+..-..|.+.-+| .+
T Consensus 514 s~~p~~t~~vlAscHsLv~le~~lVGDPlEKA~l~~v~W~~~k~~~v~p~~~~~------~~lkI~~ryhFsSaLKRmsv 587 (1160)
T KOG0209|consen 514 SKAPNETVLVLASCHSLVLLEDKLVGDPLEKATLEAVGWNLEKKNSVCPREGNG------KKLKIIQRYHFSSALKRMSV 587 (1160)
T ss_pred hhCCchHHHHHHHHHHHHHhcCcccCChHHHHHHHhcCcccccCcccCCCcCCC------cccchhhhhhHHHHHHHHHh
Confidence 1112 22222222 2 34689999999999877532221111111100 00111122223222111 11
Q ss_pred EEEEcC-------eEEEEeehhhhhhcCCCCChhhHHHHHHHHHccCeEEEEEE---------------------CCeEE
Q 003131 745 QCFISG-------KQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY---------------------DDNLI 796 (845)
Q Consensus 745 ~~~~~g-------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~va~---------------------~~~~l 796 (845)
.+..++ -....|+++.+...-.++|.++++...++..+|.|+++++| |+.|.
T Consensus 588 va~~~~~g~s~k~~~aVKGAPEvi~~ml~dvP~dY~~iYk~ytR~GsRVLALg~K~l~~~~~~q~rd~~Re~vEsdLtFa 667 (1160)
T KOG0209|consen 588 VASHQGPGSSEKYFVAVKGAPEVIQEMLRDVPKDYDEIYKRYTRQGSRVLALGYKPLGDMMVSQVRDLKREDVESDLTFA 667 (1160)
T ss_pred hhhcccCCCceEEEEEecCCHHHHHHHHHhCchhHHHHHHHHhhccceEEEEecccccccchhhhhhhhhhhhhhcceee
Confidence 111111 02334778877776667899999999999999999999988 67999
Q ss_pred EEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 797 GVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 797 G~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
|++.|.-|+|+|++++|+.|++.+.+++||||||+.||.+||+++||.
T Consensus 668 GFlif~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv 715 (1160)
T KOG0209|consen 668 GFLIFSCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIV 715 (1160)
T ss_pred eeEEEeCCCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeee
Confidence 999999999999999999999999999999999999999999999985
No 32
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=346.87 Aligned_cols=421 Identities=18% Similarity=0.232 Sum_probs=297.3
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCc
Q 003131 393 WSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTK 472 (845)
Q Consensus 393 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~ 472 (845)
....|+...++++++.++...++...+++.++..++ +...+.. |+|. ...++++|++||+|.+..+++
T Consensus 127 ~l~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Ns------e~y~~lt--r~~~----~~~~Ss~i~vGDvi~v~K~~R 194 (1051)
T KOG0210|consen 127 YLSTYWGPLGFVLTITLIKEAVDDLKRRRRDRELNS------EKYTKLT--RDGT----RREPSSDIKVGDVIIVHKDER 194 (1051)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhheeec--cCCc----ccccccccccccEEEEecCCc
Confidence 345677778888899999999999988877766654 2344443 5663 223999999999999999999
Q ss_pred cCccEEEEe-----cceeeeccccCCcceeeeccC---------------------------------------------
Q 003131 473 LPADGIVVW-----GTSYVNESMVTGEAVPVLKEI--------------------------------------------- 502 (845)
Q Consensus 473 vPaDg~ll~-----G~~~Vdes~LTGEs~pv~k~~--------------------------------------------- 502 (845)
||||.++++ |+|+|-+..|+||++...|-+
T Consensus 195 VPADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~L 274 (1051)
T KOG0210|consen 195 VPADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELMEISVYAEKPQKDIHSFVGTFTITDSDKPESL 274 (1051)
T ss_pred CCcceEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchheEEEeccCcchhhHhhEEEEEEecCCCCCcc
Confidence 999999996 889999999999998876621
Q ss_pred --CCceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Q 003131 503 --NSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLG 580 (845)
Q Consensus 503 --~~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~ 580 (845)
.+.++++|++.+|.+.+.|++||.+|+..- + -..++.+-..++..++-+.+++...+++++++.... .++
T Consensus 275 sventLWanTVvAs~t~~gvVvYTG~dtRsvM--N-ts~pr~KvGllelEiN~ltKiL~~~vlvLs~vmv~~---~g~-- 346 (1051)
T KOG0210|consen 275 SVENTLWANTVVASGTAIGVVVYTGRDTRSVM--N-TSRPRSKVGLLELEINGLTKILFCFVLVLSIVMVAM---KGF-- 346 (1051)
T ss_pred cccceeeeeeeEecCcEEEEEEEecccHHHHh--c-cCCcccccceeeeecccHHHHHHHHHHHHHHHHHHh---hcC--
Confidence 346899999999999999999999996511 0 112223333456667778888888877777654332 111
Q ss_pred CCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHHh----cCeEEecchHHHhhcCCcEEEecCCC
Q 003131 581 AYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGAN----NGVLIKGGDALERAQKIKYVIFDKTG 656 (845)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~----~gilvk~~~~~e~lg~v~~i~fDKTG 656 (845)
...|+..+++++.++-..+|..|-.-+-++-..-.....+ .|.++|+.+..|.||++.++..||||
T Consensus 347 ----------~~~wyi~~~RfllLFS~IIPISLRvnlDmaK~~ys~~i~~D~~IpgtvvRSstIPEeLGRIsylLtDKTG 416 (1051)
T KOG0210|consen 347 ----------GSDWYIYIIRFLLLFSSIIPISLRVNLDMAKIVYSWQIEHDKNIPGTVVRSSTIPEELGRISYLLTDKTG 416 (1051)
T ss_pred ----------CCchHHHHHHHHHHHhhhceeEEEEehhHHHhhHhhhcccCCCCCceeeecCCChHHhcceEEEEecCcC
Confidence 3568888888888888888988888777776665555433 57899999999999999999999999
Q ss_pred ccccCCeEEEEEEecc----CCChhhHHHHHhhhhc--------------------------------------------
Q 003131 657 TLTQGRATVTTAKVFT----KMDRGEFLTLVASAEA-------------------------------------------- 688 (845)
Q Consensus 657 TLT~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~-------------------------------------------- 688 (845)
|||+|+|.++++|... ....+++-+...++..
T Consensus 417 TLTqNEM~~KKiHLGTv~~s~e~~~eV~~~i~s~~~~~~~~~~~~~~~~k~~~s~rv~~~V~alalCHNVTPv~e~~ge~ 496 (1051)
T KOG0210|consen 417 TLTQNEMEFKKIHLGTVAYSAETMDEVSQHIQSLYTPGRNKGKGALSRVKKDMSARVRNAVLALALCHNVTPVFEDDGEV 496 (1051)
T ss_pred ccccchheeeeeeeeeeeccHhHHHHHHHHHHHhhCCCcccccccchhhcCcccHHHHHHHHHHHHhccCCcccCCCceE
Confidence 9999999999998641 1112222222222211
Q ss_pred --cCCChhHHHHHHHHhhcCcCCCCC-CCCCCCCCccccCCCccccccccccccCCC-ceEEEEc--Ce--EEEEeehhh
Q 003131 689 --SSEHPLAKAVVEYARHFHFFDDPS-LNPDGQSHSKESTGSGWLLDVSDFSALPGR-GIQCFIS--GK--QVLVGNRKL 760 (845)
Q Consensus 689 --~s~~p~~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-gi~~~~~--g~--~~~~g~~~~ 760 (845)
...+|.+.||+++.+..|..-..+ .+............++.++.+.+|++..++ ||.+.-. |. -++.|+...
T Consensus 497 sYQAaSPDEVAiVkwTe~VGl~L~~Rd~~~itL~~~~~~~~~yqIL~vFPFtsEtKRMGIIVr~e~~~evtfylKGAD~V 576 (1051)
T KOG0210|consen 497 SYQAASPDEVAIVKWTETVGLKLAKRDRHAITLRVPLDDELNYQILQVFPFTSETKRMGIIVRDETTEEVTFYLKGADVV 576 (1051)
T ss_pred EeecCCCCeEEEEEeeeecceEEeecccceEEEecCCCcceeEEEEEEeccccccceeeEEEecCCCceEEEEEecchHH
Confidence 012344444443332222100000 000000001111224456677888877654 6666543 33 234454433
Q ss_pred hhhcCCCCChhhHHHHHHHHHccCeEEEEEE---------------------------------------CCeEEEEEEe
Q 003131 761 LNESGITIPDHVESFVVELEESARTGILVAY---------------------------------------DDNLIGVMGI 801 (845)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~va~---------------------------------------~~~~lG~~~~ 801 (845)
+ +.-+...+++++...+++.+|.|++.+|. |++++|+.++
T Consensus 577 M-s~iVq~NdWleEE~gNMAREGLRtLVvakK~Ls~~eye~Fe~~y~~A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGV 655 (1051)
T KOG0210|consen 577 M-SGIVQYNDWLEEECGNMAREGLRTLVVAKKVLSEEEYEAFEEAYNAAKLSISDRDQKMANVVERYLERDLELLGLTGV 655 (1051)
T ss_pred H-hcccccchhhhhhhhhhhhhcceEEEEEecccCHHHHHHHHHHHHhhhCccchHHHHHHHHHHHHHHhhhHHhcccCh
Confidence 3 22234456778888899999999999987 6689999999
Q ss_pred eCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 802 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
||+|+++++.+++.||+|||++||||||..+||+.||+..++.
T Consensus 656 EDkLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~ 698 (1051)
T KOG0210|consen 656 EDKLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLF 698 (1051)
T ss_pred HHHHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeehhccce
Confidence 9999999999999999999999999999999999999998874
No 33
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=100.00 E-value=7.6e-36 Score=349.30 Aligned_cols=437 Identities=17% Similarity=0.194 Sum_probs=310.2
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCc
Q 003131 393 WSPTYFETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTK 472 (845)
Q Consensus 393 ~~~~~~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~ 472 (845)
.+.......++++.+..+...+|.+.|++.++.+++ ..+.|. +++. ...+..+++|++||+|.+..++.
T Consensus 79 ~~~~~~~pl~~vl~~t~iKd~~eD~rR~~~D~~iN~------~~~~v~---~~~~--~~~~~~wk~~~vGd~v~v~~~~~ 147 (1151)
T KOG0206|consen 79 NPYTTLVPLLFVLGITAIKDAIEDYRRHKQDKEVNN------RKVEVL---RGDG--CFVEKKWKDVRVGDIVRVEKDEF 147 (1151)
T ss_pred CccceeeceeeeehHHHHHHHHhhhhhhhccHHhhc------ceeEEe---cCCc--eeeeeccceeeeeeEEEeccCCc
Confidence 334444455667777789999999999999998887 367776 4332 26889999999999999999999
Q ss_pred cCccEEEEe-----cceeeeccccCCcceeeeccC---------------------------------------------
Q 003131 473 LPADGIVVW-----GTSYVNESMVTGEAVPVLKEI--------------------------------------------- 502 (845)
Q Consensus 473 vPaDg~ll~-----G~~~Vdes~LTGEs~pv~k~~--------------------------------------------- 502 (845)
+|||.+|++ |.|+|+.++|+||+....|+.
T Consensus 148 ~paD~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~~~~~~~~i~cE~p~~~ly~f~g~l~~~~~~~pl 227 (1151)
T KOG0206|consen 148 VPADLLLLSSSDEDGICYVETANLDGETNLKVKQALECTSKLDSEDSLKNFKGWIECEDPNANLYTFVGNLELQGQIYPL 227 (1151)
T ss_pred cccceEEecCCCCCceeEEEEeecCCccccceeeehhhhhcccccccccccCCceEEcCCcccHhhhhhheeeccCCCCC
Confidence 999999997 779999999999998887732
Q ss_pred --CCceeccceeec-ceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Q 003131 503 --NSPVIGGTINLH-GVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVL 579 (845)
Q Consensus 503 --~~~v~aGt~~~~-g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~ 579 (845)
.+.++.|+.+.+ ..+.+.|+.+|.+|.+.+- ...+..+++++++..++....++++.+.++++..+...++...
T Consensus 228 ~~~~~Llrg~~lrNT~~v~G~vv~tG~dtK~~~n---~~~~~~Krs~ier~~n~~i~~~~~~l~~~~~~~~i~~~~~~~~ 304 (1151)
T KOG0206|consen 228 SPDNLLLRGSRLRNTEWVYGVVVFTGHDTKLMQN---SGKPPSKRSRIERKMNKIIILLFVLLILMCLISAIGFAIWTRQ 304 (1151)
T ss_pred cHHHcccCCceeccCcEEEEEEEEcCCcchHHHh---cCCCccccchhhhhhhhhHHHHHHHHHHHHHHHHhhhheeeee
Confidence 112455665555 5678899999999977543 3346778999999999988888888887777776654433221
Q ss_pred --CCCCCCcCCCCC---chHHHHHHHHhhhheeecccccchhhHHHHHHHHHHH----------HhcCeEEecchHHHhh
Q 003131 580 --GAYPEQWLPENG---THFVFALMFSISVVVIACPCALGLATPTAVMVATGVG----------ANNGVLIKGGDALERA 644 (845)
Q Consensus 580 --~~~~~~~~~~~~---~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~----------~~~gilvk~~~~~e~l 644 (845)
...+..|..... ......+..++.++...+|..|-..+.+.-....... ....+.+|..+..|.|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~f~t~~il~~~liPISLyvsiEiik~~qs~fi~~D~~my~~e~d~~~~~rtsnl~eeL 384 (1151)
T KOG0206|consen 305 DGRHNGEWWYLSPSEAAYAGFVHFLTFIILYQYLIPISLYVSIEIVKVLQSIFINNDLDMYDEETDTPAQARTSNLNEEL 384 (1151)
T ss_pred cccccCchhhhcCchHHHHHHHHHHHHHhhhhceEEEEEEEEeeehHHHHHHHcchHHHhhhccCCCccccccCCchhhh
Confidence 111122222211 1334556667777777889888887777655544332 2467899999999999
Q ss_pred cCCcEEEecCCCccccCCeEEEEEEeccC-----C----------C--------------------------------hh
Q 003131 645 QKIKYVIFDKTGTLTQGRATVTTAKVFTK-----M----------D--------------------------------RG 677 (845)
Q Consensus 645 g~v~~i~fDKTGTLT~~~~~v~~~~~~~~-----~----------~--------------------------------~~ 677 (845)
|+|++|+.|||||||+|.|.+.++.+.+. . + ..
T Consensus 385 Gqv~yIfSDKTGTLT~N~M~F~kCsi~g~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 464 (1151)
T KOG0206|consen 385 GQVEYIFSDKTGTLTQNSMEFKKCSINGTSYGRNVTEVEAALAKRSGGDVNEHKIKGFTFEDSRLVDGLWSSEPQAEDIL 464 (1151)
T ss_pred cceeEEEEcCcCccccceeeeecccccCcccccCCChhhcccCccccccccccccccceeccchhhccccccccCcchHH
Confidence 99999999999999999999998765310 0 0 01
Q ss_pred hHHHHHhh--------------hhccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCCCccccccccccccCCC-
Q 003131 678 EFLTLVAS--------------AEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTGSGWLLDVSDFSALPGR- 742 (845)
Q Consensus 678 ~~~~~~~~--------------~~~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 742 (845)
+++...+. +...+..|.+.|+++.|+..++....+....-..........+.++.+.+|.+.++|
T Consensus 465 ~f~~~la~chtv~~e~~~~~~~~~Y~A~SPDE~AlV~aAr~~gf~f~~Rt~~~vti~~~g~~~~y~lL~iLeF~S~RKRM 544 (1151)
T KOG0206|consen 465 EFFRALALCHTVIPEKDEDSGKLSYEAESPDEAALVEAARELGFVFLGRTPDSVTIRELGVEETYELLNVLEFNSTRKRM 544 (1151)
T ss_pred HHhhHHhccceeeeccCCCccceeeecCCCcHHHHHHHHHhcCceeeeccCceEEEeccccceeEEEEEEecccccccee
Confidence 22222221 122346799999999999998754333222111111111224455666777765544
Q ss_pred ---------ceEEEEcCeEEEEeehhhhhhcCCCCChhhHHHHHHHHHccCeEEEEEE----------------------
Q 003131 743 ---------GIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAY---------------------- 791 (845)
Q Consensus 743 ---------gi~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~va~---------------------- 791 (845)
.+..++||++-.+-.+ +..++....+...+.+++++.+|+|++++||
T Consensus 545 SVIVR~p~g~i~LycKGADsvI~er--L~~~~~~~~e~T~~Hl~~yA~eGLRTLc~A~r~l~e~eY~~w~~~~~~A~ts~ 622 (1151)
T KOG0206|consen 545 SVIVRDPDGRILLYCKGADSVIFER--LSKNGEKLREKTQEHLEEYATEGLRTLCLAYRELDEEEYEEWNERYNEAKTSL 622 (1151)
T ss_pred EEEEEcCCCcEEEEEcCcchhhHhh--hhhcchHHHHHHHHHHHHHHhhhhhHhhhhhhccCHHHHHHHHHHHHHHHhhc
Confidence 4555666664332111 1112222233345678899999999999988
Q ss_pred ----------------CCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 003131 792 ----------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVID 845 (845)
Q Consensus 792 ----------------~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~~ 845 (845)
|+.++|..++||+|+++++++|+.|++||||+||||||..+||++||..|++.+
T Consensus 623 ~~Re~~L~e~ae~iEk~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll~ 692 (1151)
T KOG0206|consen 623 TDREELLDEVAEEIEKDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLLR 692 (1151)
T ss_pred cCHHHHHHHHHHHHHhcchhhcceeeechhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCCC
Confidence 678999999999999999999999999999999999999999999999999853
No 34
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=100.00 E-value=1.5e-35 Score=305.06 Aligned_cols=223 Identities=30% Similarity=0.557 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCe-EEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEe
Q 003131 403 MLITFVLFGKYLEILAKGKTSDAIKKLVELAPAT-ALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVW 481 (845)
Q Consensus 403 ~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~-~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~ 481 (845)
+++++++++.+++.+.++|+.+.++++.++.+++ ++|+ ||| +++++++++|+|||+|.|++||++||||+|++
T Consensus 1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~---r~~---~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~ 74 (230)
T PF00122_consen 1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVI---RDG---RWQKIPSSELVPGDIIILKAGDIVPADGILLE 74 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEE---ETT---EEEEEEGGGT-TTSEEEEETTEBESSEEEEEE
T ss_pred CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEE---ecc---ccccchHhhccceeeeecccccccccCcccee
Confidence 3567788999999999999999999999988887 7777 788 78999999999999999999999999999999
Q ss_pred -cceeeeccccCCcceeeecc-----CCCceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccCChhhHHHHHHh
Q 003131 482 -GTSYVNESMVTGEAVPVLKE-----INSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSKAPIQKFADFVA 555 (845)
Q Consensus 482 -G~~~Vdes~LTGEs~pv~k~-----~~~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~ 555 (845)
|.+.||||.||||+.|+.|. .++.+++||.+.+|++.++|+++|.+|..+++.+.+...+.+++++++..+++.
T Consensus 75 ~g~~~vd~s~ltGes~pv~k~~~~~~~~~~i~~Gs~v~~g~~~~~Vi~tG~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00122_consen 75 SGSAYVDESALTGESEPVKKTPLPLNPGNIIFAGSIVVSGWGIGVVIATGSDTKLGRILQLVSKSESKKSPLERKLNKIA 154 (230)
T ss_dssp SSEEEEECHHHHSBSSEEEESSSCCCTTTEE-TTEEEEEEEEEEEEEE-GGGSHHHHHHHHHHTSCSS-THHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccchhhccccccccccccccceeeecccccccccccccccccchhhhhhhHHHH
Confidence 99999999999999999999 999999999999999999999999999999999999998888899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHHHHhcCeEE
Q 003131 556 SIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLI 635 (845)
Q Consensus 556 ~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~~~~~gilv 635 (845)
.++.+++++++++++++|++. ....+|...+..++++++.+|||+|++++|+++..+..++.++|+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~~~~~~~~~~i~v 222 (230)
T PF00122_consen 155 KILIIIILAIAILVFIIWFFN------------DSGISFFKSFLFAISLLIVLIPCALPLALPLSLAIAARRLAKNGIIV 222 (230)
T ss_dssp HHHHHHHHHHHHHHHHHCHTG------------STTCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHhcccccchhhhccceec------------ccccccccccccccceeeeecccceeehHHHHHHHHHHHHHHCCEEE
Confidence 999999999998888776652 11346778899999999999999999999999999999999999999
Q ss_pred ecchHHHh
Q 003131 636 KGGDALER 643 (845)
Q Consensus 636 k~~~~~e~ 643 (845)
|+++++|.
T Consensus 223 ~~~~a~E~ 230 (230)
T PF00122_consen 223 KNLSALEA 230 (230)
T ss_dssp SSTTHHHH
T ss_pred eCcccccC
Confidence 99999995
No 35
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.80 E-value=1.6e-19 Score=184.23 Aligned_cols=167 Identities=34% Similarity=0.533 Sum_probs=136.1
Q ss_pred CcEEEecCCCccccCCeEEEEEEeccCCChhhHHHHHhhhhccCCChhHHHHHHHHhhcCcCCCCCCCCCCCCCccccCC
Q 003131 647 IKYVIFDKTGTLTQGRATVTTAKVFTKMDRGEFLTLVASAEASSEHPLAKAVVEYARHFHFFDDPSLNPDGQSHSKESTG 726 (845)
Q Consensus 647 v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~s~~p~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (845)
|++||||||||||++++.+ .. .....++.++...+..+.||+..++..++......
T Consensus 1 i~~i~fDktGTLt~~~~~v---~~---~~~~~~~~~~~~~~~~s~~p~~~~~~~~~~~~~~~------------------ 56 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSV---AP---PSNEAALAIAAALEQGSEHPIGKAIVEFAKNHQWS------------------ 56 (215)
T ss_dssp ESEEEEECCTTTBESHHEE---ES---CSHHHHHHHHHHHHCTSTSHHHHHHHHHHHHHHHH------------------
T ss_pred CeEEEEecCCCcccCeEEE---Ee---ccHHHHHHHHHHhhhcCCCcchhhhhhhhhhccch------------------
Confidence 5899999999999999999 11 56778899999999999999999999988765210
Q ss_pred CccccccccccccCCCceEEEEcCeEEEEeehhhhhhcCCCCChhhHHHHHHHHHccCeEEEEEECCeEEEEEEeeCCCC
Q 003131 727 SGWLLDVSDFSALPGRGIQCFISGKQVLVGNRKLLNESGITIPDHVESFVVELEESARTGILVAYDDNLIGVMGIADPVK 806 (845)
Q Consensus 727 ~~~~~~~~~~~~~~g~gi~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~va~~~~~lG~~~~~D~lr 806 (845)
..+.++....+.|+...+++. +. |+..++...+... .............+...+.++.++.++|.+.+.|++|
T Consensus 57 ----~~~~~~~~~~~~~~~~~~~~~-~~-g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 129 (215)
T PF00702_consen 57 ----KSLESFSEFIGRGISGDVDGI-YL-GSPEWIHELGIRV-ISPDLVEEIQESQGRTVIVLAVNLIFLGLFGLRDPLR 129 (215)
T ss_dssp ----SCCEEEEEETTTEEEEEEHCH-EE-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCEEEEESHEEEEEEEEEEEBH
T ss_pred ----hhhhhheeeeecccccccccc-cc-ccchhhhhccccc-cccchhhhHHHhhCCcccceeecCeEEEEEeecCcch
Confidence 015677888999999999888 44 8888876643321 1111222334556777888888999999999999999
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 807 ~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++++++|+.|+++|++++|+|||+..+|.++|+++||.
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~ 167 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF 167 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC
T ss_pred hhhhhhhhhhhccCcceeeeeccccccccccccccccc
Confidence 99999999999999999999999999999999999994
No 36
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.55 E-value=3.4e-14 Score=160.40 Aligned_cols=144 Identities=42% Similarity=0.680 Sum_probs=133.3
Q ss_pred EEEEEeCCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEECCCCCCHHHHHHHHHhcCcchhhhcccCCCCCCCCc
Q 003131 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQG 126 (845)
Q Consensus 47 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~ 126 (845)
+-.+++.||+|++|+..+|+.+++.+|+.++.+.+..+++++.||+...+.+.+.+.++++||.++..+..... ++
T Consensus 70 ~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~~~----~~ 145 (951)
T KOG0207|consen 70 KCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVNGN----SN 145 (951)
T ss_pred eeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhcccCC----CC
Confidence 55699999999999999999999999999999999999999999999999999999999999999877654321 11
Q ss_pred eeeeccccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceee
Q 003131 127 TIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (845)
Q Consensus 127 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 195 (845)
..+.|.|.||.|++|+.+||+.+.+++||.+.+++..++++.|.|||..++++++.+.++..||++..
T Consensus 146 -~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~ 213 (951)
T KOG0207|consen 146 -QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASV 213 (951)
T ss_pred -CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhccccee
Confidence 56789999999999999999999999999999999999999999999999999999999999999875
No 37
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.21 E-value=3.7e-11 Score=95.28 Aligned_cols=62 Identities=45% Similarity=0.737 Sum_probs=59.4
Q ss_pred ccccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCc
Q 003131 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFE 192 (845)
Q Consensus 131 ~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~ 192 (845)
+|+|+||+|++|+.+|+++|.+++||.++.+|+.++++.|.|+++..++++|.+.|+++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 36889999999999999999999999999999999999999999888999999999999995
No 38
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.16 E-value=3.4e-10 Score=137.61 Aligned_cols=142 Identities=29% Similarity=0.495 Sum_probs=112.7
Q ss_pred eEEEEEeCCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEECCCCCCHHHHHHHHHhcCcchhhhcccCC---C-C
Q 003131 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAESST---S-G 121 (845)
Q Consensus 46 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~---~-~ 121 (845)
++.++.|+||+|++|+.+|++++++++||.++.+++. +..+.. ..+.+++.+.++++||.++..+++.. . .
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~---~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~ 77 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTG---TASAEALIETIKQAGYDASVSHPKAKPLTESS 77 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEe---cCCHHHHHHHHHhcCCcccccccccccccccc
Confidence 4678999999999999999999999999999999984 444443 24678999999999999876431110 0 0
Q ss_pred -------------C--CCCceeeeccccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHH
Q 003131 122 -------------P--KPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAI 186 (845)
Q Consensus 122 -------------~--~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i 186 (845)
+ +.....+..+.++||+|++|+..+++.+.+.+||.++.+++.+++..+.+ ..+.+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~---~~s~~~I~~~I 154 (834)
T PRK10671 78 IPSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMG---SASPQDLVQAV 154 (834)
T ss_pred cCchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEc---cCCHHHHHHHH
Confidence 0 00011245688999999999999999999999999999999999988873 24678888889
Q ss_pred HhcCCceee
Q 003131 187 EDAGFEASF 195 (845)
Q Consensus 187 ~~~G~~~~~ 195 (845)
+++||.+.+
T Consensus 155 ~~~Gy~a~~ 163 (834)
T PRK10671 155 EKAGYGAEA 163 (834)
T ss_pred HhcCCCccc
Confidence 999998754
No 39
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.11 E-value=3.3e-10 Score=89.78 Aligned_cols=62 Identities=44% Similarity=0.670 Sum_probs=59.0
Q ss_pred EEEeCCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEECCCCCCHHHHHHHHHhcCcc
Q 003131 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFE 110 (845)
Q Consensus 49 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~ 110 (845)
+|.|.||+|++|+.+|+++|.++|||.++.+|+.++++++.+++...+++++.+.++++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 48899999999999999999999999999999999999999988878889999999999995
No 40
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.07 E-value=4.7e-10 Score=90.74 Aligned_cols=67 Identities=33% Similarity=0.554 Sum_probs=63.3
Q ss_pred eeccccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceee
Q 003131 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (845)
Q Consensus 129 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 195 (845)
...+.++||+|.+|+.+|+++|++++||.++++++..+++.|.||+...+.++|++++++.||.+..
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEE 69 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeee
Confidence 4578999999999999999999999999999999999999999999889999999999999998754
No 41
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.06 E-value=7.1e-10 Score=89.72 Aligned_cols=68 Identities=44% Similarity=0.663 Sum_probs=63.5
Q ss_pred ceEEEEEeCCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEECCCCCCHHHHHHHHHhcCcchh
Q 003131 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (845)
Q Consensus 45 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (845)
+++..+.++||+|.+|+..++++|.+++||.++++++..+.+.+.++....+.+++.+++++.||.+.
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~ 68 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVE 68 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCee
Confidence 35677999999999999999999999999999999999999999999878999999999999999874
No 42
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.00 E-value=8.8e-06 Score=94.85 Aligned_cols=66 Identities=44% Similarity=0.732 Sum_probs=61.0
Q ss_pred eeccccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCC-HHHHHHHHHhcCCceee
Q 003131 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVIS-KDDIANAIEDAGFEASF 195 (845)
Q Consensus 129 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~-~~~i~~~i~~~G~~~~~ 195 (845)
+..+.++||+|++|+++|| ++++++||.++.+|+.++++.+.||+...+ .+++...+++.||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 4578999999999999999 999999999999999999999999987666 78999999999998763
No 43
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.93 E-value=0.0057 Score=73.56 Aligned_cols=66 Identities=29% Similarity=0.498 Sum_probs=58.0
Q ss_pred eeeccccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceee
Q 003131 128 IVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (845)
Q Consensus 128 ~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 195 (845)
.+..+.++||+|++|++++++.+.+.+||.++.+++.+++..+.|++.. . +++.+.+++.||++..
T Consensus 53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~-~~I~~aI~~~Gy~a~~ 118 (741)
T PRK11033 53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-R-AQVESAVQKAGFSLRD 118 (741)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-h-HHHHHHHHhccccccc
Confidence 4567889999999999999999999999999999999999999998763 3 7777888999998753
No 44
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.35 E-value=0.0013 Score=51.41 Aligned_cols=66 Identities=35% Similarity=0.538 Sum_probs=55.9
Q ss_pred eEEEEEeCCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEECCCCCCHHHHHHHHHhcCcch
Q 003131 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEA 111 (845)
Q Consensus 46 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 111 (845)
++..+.+.|++|..|...+++.+...+++....+++......+.+++.......+...+...||.+
T Consensus 2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 455699999999999999999999999999999999999999988765556677777777788754
No 45
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.29 E-value=0.0011 Score=51.76 Aligned_cols=64 Identities=34% Similarity=0.510 Sum_probs=56.7
Q ss_pred eccccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCce
Q 003131 130 GQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEA 193 (845)
Q Consensus 130 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 193 (845)
..+.+.|+.|..|+..+++.+...+++....+++..+.+.+.|++.......+...+...||.+
T Consensus 4 ~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 4 FTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 3578999999999999999999999999999999999999999877667788877788888864
No 46
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.0016 Score=61.63 Aligned_cols=63 Identities=33% Similarity=0.693 Sum_probs=56.3
Q ss_pred eeccccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceee
Q 003131 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (845)
Q Consensus 129 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 195 (845)
..+|.| .|+|.+|+..+++.|+.++||.++++++....+.|. ....+.+|.+.|+.+|-++.+
T Consensus 8 ~~efaV-~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~---ts~p~s~i~~~le~tGr~Avl 70 (247)
T KOG4656|consen 8 EAEFAV-QMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVE---TSVPPSEIQNTLENTGRDAVL 70 (247)
T ss_pred eEEEEE-echhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEE---ccCChHHHHHHHHhhChheEE
Confidence 456676 699999999999999999999999999999999999 456789999999999998864
No 47
>PLN02957 copper, zinc superoxide dismutase
Probab=97.00 E-value=0.0027 Score=65.02 Aligned_cols=66 Identities=26% Similarity=0.450 Sum_probs=58.2
Q ss_pred eeccccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeecc
Q 003131 129 VGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQS 198 (845)
Q Consensus 129 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~ 198 (845)
++.+.+ +|.|.+|+.++++.+.+++||..+.+++..+++.|.|+ ...+++.+.+++.||.+.+...
T Consensus 7 ~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a~~~~~ 72 (238)
T PLN02957 7 LTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKARLIGQ 72 (238)
T ss_pred EEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcEEEecC
Confidence 456777 69999999999999999999999999999999999983 4678899999999999876544
No 48
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.0042 Score=58.85 Aligned_cols=65 Identities=31% Similarity=0.522 Sum_probs=55.7
Q ss_pred ceEEEEEeCCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEECCCCCCHHHHHHHHHhcCcchhh
Q 003131 45 MRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (845)
Q Consensus 45 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 113 (845)
.-+.+|.| .|+|.+|+..+++.|+..+|+.++++++..+.+.+. +...++++.+.++.+|-++.+
T Consensus 6 ~~~~efaV-~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~---ts~p~s~i~~~le~tGr~Avl 70 (247)
T KOG4656|consen 6 TYEAEFAV-QMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVE---TSVPPSEIQNTLENTGRDAVL 70 (247)
T ss_pred ceeEEEEE-echhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEE---ccCChHHHHHHHHhhChheEE
Confidence 34566777 599999999999999999999999999999999886 345678999999999987644
No 49
>PLN02957 copper, zinc superoxide dismutase
Probab=96.83 E-value=0.0047 Score=63.24 Aligned_cols=67 Identities=24% Similarity=0.369 Sum_probs=57.7
Q ss_pred eEEEEEeCCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEECCCCCCHHHHHHHHHhcCcchhhhcc
Q 003131 46 RRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEILAE 116 (845)
Q Consensus 46 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 116 (845)
+++.+.+ +|+|..|+..+++.+.+.+||..+.+++..+++.+.++ ...+++.+.+++.||.+++...
T Consensus 6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~---~~~~~I~~aIe~~Gy~a~~~~~ 72 (238)
T PLN02957 6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS---SPVKAMTAALEQTGRKARLIGQ 72 (238)
T ss_pred EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec---CCHHHHHHHHHHcCCcEEEecC
Confidence 4556888 79999999999999999999999999999999999872 4678888999999999866543
No 50
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.0035 Score=51.07 Aligned_cols=52 Identities=19% Similarity=0.438 Sum_probs=48.4
Q ss_pred CccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcC
Q 003131 136 GMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAG 190 (845)
Q Consensus 136 gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 190 (845)
.|||..|..++++.+..++||.++.++...+++++.-+ .++..+.+.+++.|
T Consensus 12 ~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 12 NMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred CcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 89999999999999999999999999999999999943 78899999998876
No 51
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.0063 Score=49.57 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=49.3
Q ss_pred EEeCCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEECCCCCCHHHHHHHHHhcC
Q 003131 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAG 108 (845)
Q Consensus 50 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G 108 (845)
...-.|||.+|...+++.++.++||.++.++...+++++.-. .++..+.+.+.+.|
T Consensus 8 v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~---~~p~~vl~~l~k~~ 63 (73)
T KOG1603|consen 8 VLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN---VDPVKLLKKLKKTG 63 (73)
T ss_pred EEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe---cCHHHHHHHHHhcC
Confidence 334489999999999999999999999999999999999743 67889999998866
No 52
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=92.62 E-value=0.18 Score=50.63 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=41.5
Q ss_pred CCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 003131 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVID 845 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~~ 845 (845)
.+++|++.+.++.+|++|.+|+++||-...-+..+|+++|++.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~ 118 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY 118 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch
Confidence 8999999999999999999999999999999999999999873
No 53
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=91.63 E-value=0.2 Score=49.52 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 807 REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 807 ~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+++.+.|+.++++|++++++||+....+..+|+.+||+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 77779999999999999999999999999999999986
No 54
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=91.15 E-value=1.3 Score=37.13 Aligned_cols=66 Identities=33% Similarity=0.544 Sum_probs=52.5
Q ss_pred eccccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceee
Q 003131 130 GQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (845)
Q Consensus 130 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 195 (845)
..+.+.++.|..|...++..+...+++.....+.......+.+++.......+...+++.||...+
T Consensus 25 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 90 (92)
T TIGR02052 25 VTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSSL 90 (92)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence 356689999999999999999999999888999888888887766544566666666778887543
No 55
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=90.91 E-value=0.55 Score=41.89 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=47.9
Q ss_pred CCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 792 DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 792 ~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
-+++.+.++---++=++++++|++|+.. +++.+-|||..-+-...|+-+||+
T Consensus 18 ~~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~ 69 (152)
T COG4087 18 AGKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIP 69 (152)
T ss_pred cceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCc
Confidence 4577788888888899999999999999 999999999999999999999986
No 56
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=90.91 E-value=0.46 Score=45.15 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=38.4
Q ss_pred CCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 792 DDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 792 ~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+++.++.+.+.|. . +|++|++.|+++.++||++...+..+.+++|+.
T Consensus 22 ~~~~~~~~~~~~~----~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 22 NGEEIKAFNVRDG----Y--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred CCcEEEEEechhH----H--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence 4455555544443 2 999999999999999999999999999999985
No 57
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=90.05 E-value=0.53 Score=47.63 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=39.2
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+++|++++.++.|++.|+++.++||.+...+..+.+.+|+.
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD 125 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999999999985
No 58
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=89.92 E-value=1.6 Score=40.95 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=58.4
Q ss_pred HHHHHccCeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 777 VELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 777 ~~~~~~g~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+.+.+.|.+.+.+--|.+++.. =....-|++++-++.++.+|+++.++|--++.-+..+++.+|++
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~w--d~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~ 86 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPW--DNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP 86 (175)
T ss_pred HHHHHcCCcEEEEeccCceecc--cCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc
Confidence 4678899999999999998765 24567899999999999999999999999999999999999985
No 59
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=89.88 E-value=0.59 Score=42.67 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=40.6
Q ss_pred EeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 003131 800 GIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCV 843 (845)
Q Consensus 800 ~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI 843 (845)
....++++++++.+++|++.|++++++||-....+..+.+++|+
T Consensus 20 ~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 20 IEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 34568999999999999999999999999999999999999887
No 60
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=89.75 E-value=51 Score=41.96 Aligned_cols=199 Identities=17% Similarity=0.225 Sum_probs=101.0
Q ss_pred EEEEEeCCCCch----hhHHHHHHhhhCCCCceEEEEEeeccEEEEE--ECCCCCCHH----HHHHHHHhcCc--chhhh
Q 003131 47 RIQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVALLQNKADVV--FDPDLVKDE----DIKNAIEDAGF--EAEIL 114 (845)
Q Consensus 47 ~~~~~v~gm~C~----~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~--~~~~~~~~~----~i~~~i~~~Gy--~~~~~ 114 (845)
.+...-+|.+-. .-...+|++++.++|+.++.-.-..+...+. ++.+ .+.+ ++.+.+...-- .....
T Consensus 44 ~V~~~~pgas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~-~d~~~a~~~v~~~i~~~~~~LP~~~~ 122 (1021)
T PF00873_consen 44 SVTTSYPGASPEEVEQLVTKPLEEALSSVEGVKEIRSTSREGSSSITVEFDDG-TDIDEALQEVREKIDQIRSDLPPGVE 122 (1021)
T ss_dssp EEEEE-TTS-HHHHHHHTHHHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTT-S-HHHHHHHHHHHHHHHGGGS-HHHH
T ss_pred EEEEecCcCCHHHHHHHHHHHHHHHHcCCCCeEEEEEEecCCcEEEEEEeccc-cCHHHHHHHHHHHHHhhhhhCccccc
Confidence 344555665533 3456788899999999999887666655544 5544 3443 45555554421 11110
Q ss_pred cccCC-CCCCCCceeeeccccC--Cccc----hhhHHHHHHHhcCCCCeeeEEeec-CCCeEEEEeCCC-----CCCHHH
Q 003131 115 AESST-SGPKPQGTIVGQYTIG--GMTC----AACVNSVEGILRGLPGVKRAVVAL-ATSLGEVEYDPT-----VISKDD 181 (845)
Q Consensus 115 ~~~~~-~~~~~~~~~~~~~~v~--gm~C----~~C~~~ie~~l~~~~GV~~~~v~~-~~~~~~v~~~~~-----~~~~~~ 181 (845)
.+.-. ........-.+.+.-+ +++- ....+.++..|++++||.++++.- ..+.+.|.+||+ .++..+
T Consensus 123 ~p~i~~~~~~~~~i~~~~l~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~~~ 202 (1021)
T PF00873_consen 123 EPQIFKFDPSDSPIMILALTSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSLSD 202 (1021)
T ss_dssp HHEEEEEEEECCEEEEEEEEESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--HHH
T ss_pred CCceeeccCCCceeEEEEeccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCHHH
Confidence 00000 0000011112222222 1121 113457899999999999999874 556788999984 478889
Q ss_pred HHHHHHhcCCceeeec-cCCcceeEEEEecccchhhhHHHHhhhc--------cCCCceEEEeecCCCeEEEEeCC
Q 003131 182 IANAIEDAGFEASFVQ-SSGQDKILLQVTGVLCELDAHFLEGILS--------NFKGVRQFRFDKISGELEVLFDP 248 (845)
Q Consensus 182 i~~~i~~~G~~~~~~~-~~~~~~~~~~v~gm~c~~c~~~ie~~l~--------~~~gV~~~~v~~~~~~~~V~~d~ 248 (845)
+.++|.+.......-. ..+..+..++..|.... .+.+++..- .+..|-+++..........+++.
T Consensus 203 v~~~l~~~n~~~~~G~~~~~~~~~~i~~~~~~~~--~~~l~~~~i~~~~g~~i~L~dvA~V~~~~~~~~~~~~~nG 276 (1021)
T PF00873_consen 203 VAQALQANNVNQPAGTIEEGNQEILIRVDGEFKS--LEDLENIPIRNSDGRPIRLKDVATVEDGYEDPTSIARFNG 276 (1021)
T ss_dssp HHHHHHHHSCEEEEEEETTTTEEEEEEECES--S--HHHHHT-EEEETTSEEEEGGGTEEEEEEESSSSEEEEETT
T ss_pred HHHHHHHhhhhccCCccchhhHHHhhhhhhhcCC--hhhhceeEEEeccccccccccceEEEeecccchhhhhccc
Confidence 9999988776553311 12234445555544332 233443332 12234455555555555566654
No 61
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=89.65 E-value=2.4 Score=35.43 Aligned_cols=65 Identities=37% Similarity=0.593 Sum_probs=48.5
Q ss_pred EEEEEeCCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEECCCCCCHHHHHHHHHhcCcch
Q 003131 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEA 111 (845)
Q Consensus 47 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~ 111 (845)
...+.+.++.|..|...++..+...+++....++.......+.++........+.....+.||..
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPS 88 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCe
Confidence 34577999999999999999999999988888888787766665443334555555556677764
No 62
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=88.93 E-value=0.56 Score=46.75 Aligned_cols=45 Identities=18% Similarity=0.079 Sum_probs=41.4
Q ss_pred eeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCCC
Q 003131 801 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVID 845 (845)
Q Consensus 801 ~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~~ 845 (845)
+..++++++.+.|+.+++.|++++++||-....+..+++.+|+++
T Consensus 84 ~~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~ 128 (202)
T TIGR01490 84 IESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN 128 (202)
T ss_pred HHHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc
Confidence 456799999999999999999999999999999999999999863
No 63
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=88.63 E-value=0.78 Score=44.53 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=37.9
Q ss_pred CChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 805 VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 805 lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+++++.+.++.|++.|+++.++||.....+..+++.+|+.
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 6899999999999999999999999999999999999875
No 64
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=88.61 E-value=0.86 Score=43.69 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=39.3
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
.+-|++++.++.|++.|.++.++||--..-+..||.++||+
T Consensus 88 ~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~ 128 (227)
T KOG1615|consen 88 TLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIP 128 (227)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCc
Confidence 56799999999999999999999999999999999999997
No 65
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=88.35 E-value=1.1 Score=41.26 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=45.9
Q ss_pred EEEEEECCeEEEEEEe-----eCCCChhHHHHHHHHHhCCCeEEEEcCCC--------HHHHHHHHHHcCCC
Q 003131 786 GILVAYDDNLIGVMGI-----ADPVKREAAVVVEGLLKMGVRPVMVTGDN--------WRTAHAVAREVCVI 844 (845)
Q Consensus 786 ~l~va~~~~~lG~~~~-----~D~lr~~~~~~I~~L~~~gi~v~mlTGD~--------~~tA~~iA~~~GI~ 844 (845)
.+.+-.|+++..-... +-++.|++.++++.|++.|+++.++|+.. .....++.+.+|+.
T Consensus 2 ~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred EEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 4666777777742111 24678999999999999999999999998 77788888888764
No 66
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=86.91 E-value=1.1 Score=44.43 Aligned_cols=41 Identities=22% Similarity=0.231 Sum_probs=38.8
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+++|++.+.++.|++.|+++.++|+-....+..+++.+|+.
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC
Confidence 58999999999999999999999999999999999999975
No 67
>PLN02954 phosphoserine phosphatase
Probab=86.61 E-value=1.2 Score=45.29 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=38.9
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+++|+++++++.|++.|+++.++||.....+..+.+.+|+.
T Consensus 84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCC
Confidence 47899999999999999999999999999999999999985
No 68
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=86.23 E-value=2.7 Score=40.65 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=51.1
Q ss_pred HHHccCeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCC-HHHHHHHHHHcCCC
Q 003131 779 LEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDN-WRTAHAVAREVCVI 844 (845)
Q Consensus 779 ~~~~g~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~-~~tA~~iA~~~GI~ 844 (845)
+.+.+.+.+.+..|+++.-. =...+-+++.++++.|++.|+++.++|+-+ ...+..+.+.+|+.
T Consensus 20 ~~~~~v~~vv~D~Dgtl~~~--~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~ 84 (170)
T TIGR01668 20 LKKVGIKGVVLDKDNTLVYP--DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP 84 (170)
T ss_pred HHHCCCCEEEEecCCccccC--CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE
Confidence 34578888888888776522 133688999999999999999999999988 67788888888863
No 69
>PRK06769 hypothetical protein; Validated
Probab=85.90 E-value=1.2 Score=43.12 Aligned_cols=49 Identities=12% Similarity=0.037 Sum_probs=40.7
Q ss_pred cCeEEEEEECCeEEEEEEeeC----CCChhHHHHHHHHHhCCCeEEEEcCCCH
Q 003131 783 ARTGILVAYDDNLIGVMGIAD----PVKREAAVVVEGLLKMGVRPVMVTGDNW 831 (845)
Q Consensus 783 g~~~l~va~~~~~lG~~~~~D----~lr~~~~~~I~~L~~~gi~v~mlTGD~~ 831 (845)
|++++.+-.|+++.|--.+.+ ++.|++++++++|++.|+++.++|....
T Consensus 3 ~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 3 NIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred CCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCch
Confidence 678899999999877644332 3689999999999999999999998764
No 70
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=85.83 E-value=1.8 Score=44.16 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=47.8
Q ss_pred eEEEEEECCeEEEEEEeeCC-CChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 785 TGILVAYDDNLIGVMGIADP-VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 785 ~~l~va~~~~~lG~~~~~D~-lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+.+++-.|++++- .|. +.+.+.++|++|++.|+++++.||=....+..+++++|+.
T Consensus 4 kli~~DlDGTLl~----~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 4 KAIAIDIDGTITD----KDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred eEEEEecCCCcCC----CCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 4566677888863 333 7899999999999999999999999999999999999875
No 71
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=85.29 E-value=1.8 Score=45.52 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=48.1
Q ss_pred eEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 785 ~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+.+++-.|++++.- .+.+.++++++|++|++.|+++++.||-....+..+.+++|+.
T Consensus 5 kli~~DlDGTLl~~---~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 5 LLVFTDLDGTLLDH---HTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred eEEEEcCcccCcCC---CCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 45666668888742 3457788999999999999999999999999999999999975
No 72
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=85.12 E-value=2.1 Score=44.53 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=48.3
Q ss_pred eEEEEEECCeEEEEEEeeCC--CC-hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 785 TGILVAYDDNLIGVMGIADP--VK-REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 785 ~~l~va~~~~~lG~~~~~D~--lr-~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
.++++-.|++++.- +.+ +| |++.+++++|++.|+++.+.|+=....+...-+++||.
T Consensus 127 kvIvFDLDgTLi~~---~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd 186 (301)
T TIGR01684 127 HVVVFDLDSTLITD---EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLD 186 (301)
T ss_pred eEEEEecCCCCcCC---CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCC
Confidence 46778888887544 433 67 99999999999999999999988888888899999986
No 73
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=85.01 E-value=1.5 Score=43.81 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=37.7
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+++|++++.|+.||+.| ++.++||-....+..+++++||+
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~ 107 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFP 107 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCc
Confidence 57999999999999975 99999999999999999999986
No 74
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=84.63 E-value=1.7 Score=41.63 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=42.0
Q ss_pred hhhHHHHHHHhcCCCCeeeEEeecCCCe-------------------EEEEeCCCCCCHHHHHHHHH
Q 003131 140 AACVNSVEGILRGLPGVKRAVVALATSL-------------------GEVEYDPTVISKDDIANAIE 187 (845)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~~-------------------~~v~~~~~~~~~~~i~~~i~ 187 (845)
+.|-|-+|..+.+++||.++.+-++.+. +.|.|||..++.++|++..=
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~ 76 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFF 76 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHH
Confidence 4688999999999999999998877765 89999999999999988653
No 75
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=84.55 E-value=2 Score=44.98 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=48.8
Q ss_pred eEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 785 ~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+.+++-.|++++.- ...+-+.++++|++|++.|+++++.||=....+..+.+++|+.
T Consensus 4 kli~~DlDGTLl~~---~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 4 KLIAIDMDGTLLLP---DHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred EEEEEecCCcCcCC---CCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 45666678888742 3468899999999999999999999999999999999999874
No 76
>PRK10976 putative hydrolase; Provisional
Probab=83.66 E-value=2.4 Score=44.42 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=48.1
Q ss_pred eEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 785 ~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+.+++-.|++++-- ...+-+.++++|++|++.|+++++.||=....+..+.+++|++
T Consensus 3 kli~~DlDGTLl~~---~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 3 QVVASDLDGTLLSP---DHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred eEEEEeCCCCCcCC---CCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 34566678888732 3358899999999999999999999999999999999999875
No 77
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=83.64 E-value=2.8 Score=43.77 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=46.7
Q ss_pred eEEEEEECCeEEEEEEeeCC--CC-hhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 785 TGILVAYDDNLIGVMGIADP--VK-REAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 785 ~~l~va~~~~~lG~~~~~D~--lr-~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+++++-.|++++-- +.+ +| |++.+++++|+++|+++.++|+-+...+..+-+++|+.
T Consensus 129 ~~i~~D~D~TL~~~---~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~ 188 (303)
T PHA03398 129 HVIVFDLDSTLITD---EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLE 188 (303)
T ss_pred cEEEEecCCCccCC---CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCC
Confidence 45677778887544 444 46 99999999999999999999977777888899988885
No 78
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=83.05 E-value=2.6 Score=44.30 Aligned_cols=57 Identities=9% Similarity=0.059 Sum_probs=48.3
Q ss_pred eEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 785 ~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+.+++-.|++++.- ...+-+.++++|++|++.|+++++.||=+...+..+.+++|+.
T Consensus 3 kli~~DlDGTLl~~---~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 3 RLAAFDMDGTLLMP---DHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred cEEEEeCCCcCcCC---CCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 34556668888742 3359999999999999999999999999999999999999875
No 79
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=82.69 E-value=2.2 Score=43.24 Aligned_cols=42 Identities=10% Similarity=0.038 Sum_probs=39.2
Q ss_pred CCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
.++.|++.+.++.|++.|+++.++||........+.+..|+.
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 133 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIA 133 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCc
Confidence 568999999999999999999999999999999999998875
No 80
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=82.46 E-value=3.5 Score=43.19 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=48.2
Q ss_pred eEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 785 ~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+.+++-.|++++. =...+-++++++|++|++.|+++++.||=+...+..+.+++|+.
T Consensus 4 kli~~DlDGTLl~---~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 4 RVIALDLDGTLLT---PKKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred cEEEEeCCCceEC---CCCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 4566677888863 12358899999999999999999999999999999999999874
No 81
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=82.05 E-value=3.1 Score=43.73 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=48.4
Q ss_pred CeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 784 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 784 ~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
.+.+++-.|++++.- ...+-+.++++|++|++.|+++++.||=....+..+++++|++
T Consensus 7 ~~lI~~DlDGTLL~~---~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 7 PLLIFTDLDGTLLDS---HTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred CeEEEEeCccCCcCC---CCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 456677778888641 2345578999999999999999999999999999999999974
No 82
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=81.80 E-value=2.3 Score=41.61 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=39.1
Q ss_pred CCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
-++++++.+.++.|++.|+++.++|+.+......+.+..|+.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 112 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEK 112 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCCh
Confidence 489999999999999999999999999999999999988874
No 83
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=81.16 E-value=0.81 Score=39.89 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=33.7
Q ss_pred EEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH---HHcCCC
Q 003131 799 MGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA---REVCVI 844 (845)
Q Consensus 799 ~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA---~~~GI~ 844 (845)
+...+.+=|+++++|++|++.|++++++|-....+...++ +.+||.
T Consensus 9 l~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 9 LYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp SEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred eEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 3456778899999999999999999999988866655555 445553
No 84
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=80.82 E-value=1.7e+02 Score=37.23 Aligned_cols=141 Identities=14% Similarity=0.183 Sum_probs=78.0
Q ss_pred EEEEEeCCCCchh----hHHHHHHhhhCCCCceEEEEEe---eccEEEEEECCCCCCH----HHHHHHHHhc--Ccchhh
Q 003131 47 RIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVAL---LQNKADVVFDPDLVKD----EDIKNAIEDA--GFEAEI 113 (845)
Q Consensus 47 ~~~~~v~gm~C~~----C~~~ie~~l~~~~gv~~~~v~~---~~~~~~v~~~~~~~~~----~~i~~~i~~~--Gy~~~~ 113 (845)
.+...-+|.+-.. -...+|++++.++|+.++...- ......+.++.+. +. .++.+.+... .+....
T Consensus 44 ~V~~~~pGas~~~ve~~vt~plE~~l~~v~gv~~i~S~s~~~g~s~i~v~f~~~~-d~~~a~~~v~~~l~~~~~~LP~~~ 122 (1044)
T TIGR00915 44 TVSASYPGASAQTVQDTVTQVIEQQMNGIDGLRYMSSESDSDGSMTITLTFEQGT-DPDIAQVQVQNKLQLATPLLPQEV 122 (1044)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEEcCCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCcc
Confidence 3444456655433 3456678899999999887643 2345556665432 32 3455555432 111110
Q ss_pred hcccCCCCCCCCceeeeccccCC----ccc----hhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCC-----CCCHH
Q 003131 114 LAESSTSGPKPQGTIVGQYTIGG----MTC----AACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPT-----VISKD 180 (845)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~v~g----m~C----~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~-----~~~~~ 180 (845)
+................+.+.+ .+- ..=.+.++..|++++||.++++.-..+.+.|..||+ .+++.
T Consensus 123 -~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~ 201 (1044)
T TIGR00915 123 -QRQGVRVEKASSNFLMVIGLVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPA 201 (1044)
T ss_pred -cCCCcEEeCCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCHH
Confidence 0000000000000011222211 111 112356889999999999999987777799999985 37888
Q ss_pred HHHHHHHhc
Q 003131 181 DIANAIEDA 189 (845)
Q Consensus 181 ~i~~~i~~~ 189 (845)
++.+.|+..
T Consensus 202 dV~~~i~~~ 210 (1044)
T TIGR00915 202 DVISAIQAQ 210 (1044)
T ss_pred HHHHHHHHh
Confidence 999999864
No 85
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=80.67 E-value=3.3 Score=39.04 Aligned_cols=48 Identities=23% Similarity=0.449 Sum_probs=40.6
Q ss_pred hhhHHHHHHHhcCCCCeeeEEeecCCC--------------eEEEEeCCCCCCHHHHHHHHH
Q 003131 140 AACVNSVEGILRGLPGVKRAVVALATS--------------LGEVEYDPTVISKDDIANAIE 187 (845)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~--------------~~~v~~~~~~~~~~~i~~~i~ 187 (845)
+.|-|-+|..+.+++||.++.+-++.+ .+.|.|||..++.++|++..=
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~ 69 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLF 69 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHH
Confidence 468899999999999999988876553 488999999999999988653
No 86
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=80.59 E-value=83 Score=33.37 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=47.8
Q ss_pred hhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeeccCC--cceeEEEEecccchhhh
Q 003131 140 AACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQSSG--QDKILLQVTGVLCELDA 217 (845)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~~~--~~~~~~~v~gm~c~~c~ 217 (845)
..|...+++.+++.+||++++.- ...+.+.+..+..|+......+++ +....+++.. +...
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~~--------------sre~~l~~L~~~lg~~~~~~l~~nPLP~~~vV~~~~---p~~~ 133 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRFI--------------SREEALKELQPWLGFGALLMLDENPLPDVFVVTPDD---PPQV 133 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEEe--------------CHHHHHHHHHHHcCchhhhcCCCCCCCceEEEEeCC---CccH
Confidence 88999999999999999986652 123444555567888611111112 2333333322 5556
Q ss_pred HHHHhhhccCCCceEEE
Q 003131 218 HFLEGILSNFKGVRQFR 234 (845)
Q Consensus 218 ~~ie~~l~~~~gV~~~~ 234 (845)
..+.+.+..++||.+++
T Consensus 134 ~~i~~~l~~l~gV~~V~ 150 (297)
T COG2177 134 KAIAAALRDLPGVAEVD 150 (297)
T ss_pred HHHHHHHHcCccceehh
Confidence 66777777777776654
No 87
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=80.57 E-value=2.6 Score=42.72 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=39.2
Q ss_pred CCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
-++.|++.++++.|++.|+++.++|+........+.+++||.
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 132 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLR 132 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcch
Confidence 578899999999999999999999999999999999999875
No 88
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=79.69 E-value=10 Score=26.40 Aligned_cols=57 Identities=49% Similarity=0.886 Sum_probs=41.2
Q ss_pred cCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCC
Q 003131 134 IGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGF 191 (845)
Q Consensus 134 v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~ 191 (845)
+.++.|..|...++..+...+++.....++......+.++.. .....+...+...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 60 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPE-VSPEELLEAIEDAGY 60 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCC-CCHHHHHHHHHHcCC
Confidence 568889999999999888888988778888777777777553 344444444444444
No 89
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=79.61 E-value=2.9 Score=41.68 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=38.1
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.+++.+++++|++.|+++.++|+.+...+..+-+.+|+.
T Consensus 75 ~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~ 115 (205)
T TIGR01454 75 EVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLL 115 (205)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCCh
Confidence 78899999999999999999999999999999888888874
No 90
>KOG4383 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.43 E-value=12 Score=42.87 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=49.3
Q ss_pred eEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 794 NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 794 ~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
.|.|++.+.-+.|++....|+.|-++-||.+-.+-.++...+-.|+++||.
T Consensus 816 If~GlVs~~Yea~ldiVriIdgL~naCiRfVYFS~EdELkSkVFAEKlGiE 866 (1354)
T KOG4383|consen 816 IFCGLVSLHYEAILDIVRIIDGLDNACIRFVYFSKEDELKSKVFAEKLGIE 866 (1354)
T ss_pred hhhhhhhhhccchhhHHHHHHHhhhhheeeeeecchHHHHHHHHHHHhccc
Confidence 689999999999999999999999999999999999999999999999985
No 91
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=79.40 E-value=2.9 Score=44.94 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=38.5
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.+.++.|++.|+++.++||.....+..+.+++|++
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld 221 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLD 221 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCC
Confidence 58999999999999999999999999998899999999985
No 92
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=79.18 E-value=3 Score=41.82 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.++++.|++.|+++.++|+-+...+..+.+..|+.
T Consensus 85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 125 (213)
T TIGR01449 85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA 125 (213)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH
Confidence 68999999999999999999999999999999999998874
No 93
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=79.02 E-value=5.9 Score=38.79 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=45.0
Q ss_pred cCeEEEEEECCeEEEE-EEe---eCCCChhH---HHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 783 ARTGILVAYDDNLIGV-MGI---ADPVKREA---AVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 783 g~~~l~va~~~~~lG~-~~~---~D~lr~~~---~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+.+.+.+-.|++++.- +.+ ...+++.. ...|+.|++.|+++.++||.+...+..+++++|+.
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~ 88 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGIT 88 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCc
Confidence 5667777777777631 111 11122222 26899999999999999999999999999999985
No 94
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=78.25 E-value=3.7 Score=40.65 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=37.6
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.+++++|++.|+++.++|+-+......+.+.+||.
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~ 132 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD 132 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh
Confidence 57899999999999999999999999988888888888874
No 95
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=77.83 E-value=3.5 Score=43.06 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=47.3
Q ss_pred eEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 785 TGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 785 ~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+.+++-.|++++.- ..++.+.++++|+++++.|+++.+.||=....++.+.+++|+.
T Consensus 4 kli~~DlDGTLl~~---~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~ 60 (264)
T COG0561 4 KLLAFDLDGTLLDS---NKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLD 60 (264)
T ss_pred eEEEEcCCCCccCC---CCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC
Confidence 44566666666432 2239999999999999999999999999999999999999985
No 96
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=77.52 E-value=1.8e+02 Score=36.97 Aligned_cols=139 Identities=14% Similarity=0.219 Sum_probs=78.8
Q ss_pred EEEeCCCCch----hhHHHHHHhhhCCCCceEEEEEe---eccEEEEEECCCCCCH----HHHHHHHHhcC--cchhhhc
Q 003131 49 QVGVTGMTCA----ACSNSVEGALMGLKGVAKASVAL---LQNKADVVFDPDLVKD----EDIKNAIEDAG--FEAEILA 115 (845)
Q Consensus 49 ~~~v~gm~C~----~C~~~ie~~l~~~~gv~~~~v~~---~~~~~~v~~~~~~~~~----~~i~~~i~~~G--y~~~~~~ 115 (845)
...=+|.+-. .-...+|++++.++|+.+++-.- ..+.+.+.|+... +. .++.+.+...- +.... +
T Consensus 46 ~t~ypGasp~~vE~~Vt~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~v-~ 123 (1037)
T PRK10555 46 TANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGT-DPDEAVQQVQNQLQSAMRKLPQAV-Q 123 (1037)
T ss_pred EEecCCCCHHHHHHHHhHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECCC-CHHHHHHHHHHHHHHHHHhCCCcc-c
Confidence 3334555433 24566888999999999997642 2345666675442 33 34555554331 11110 0
Q ss_pred ccCCCC--CCCCceeeecccc-CC-ccc----hhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCC-----CCCHHHH
Q 003131 116 ESSTSG--PKPQGTIVGQYTI-GG-MTC----AACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPT-----VISKDDI 182 (845)
Q Consensus 116 ~~~~~~--~~~~~~~~~~~~v-~g-m~C----~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~-----~~~~~~i 182 (845)
...... ......-.+.+.- ++ +.- .--++.++..|++++||.+++++-....+.|..||. .++..++
T Consensus 124 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v 203 (1037)
T PRK10555 124 NQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDV 203 (1037)
T ss_pred cCCceEeCCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHH
Confidence 000000 0001111222211 22 221 112467889999999999999987667789999984 3788899
Q ss_pred HHHHHhc
Q 003131 183 ANAIEDA 189 (845)
Q Consensus 183 ~~~i~~~ 189 (845)
.++|+..
T Consensus 204 ~~al~~~ 210 (1037)
T PRK10555 204 TDAIESQ 210 (1037)
T ss_pred HHHHHHh
Confidence 9999864
No 97
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=77.21 E-value=3.8 Score=40.57 Aligned_cols=47 Identities=32% Similarity=0.528 Sum_probs=40.9
Q ss_pred hhhHHHHHHHhcCCCCeeeEEeecCCC-------------------eEEEEeCCCCCCHHHHHHHH
Q 003131 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAI 186 (845)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i 186 (845)
+.|-|-+|..+.+++||.++.+-++.+ .+.|.|||..++.++|++..
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~F 117 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVF 117 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHH
Confidence 468889999999999999999888733 48999999999999998866
No 98
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=77.08 E-value=4 Score=41.05 Aligned_cols=41 Identities=15% Similarity=-0.010 Sum_probs=38.0
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.++++.|++.|+++.++|+-....+..+-+..|+.
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~ 122 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD 122 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh
Confidence 37899999999999999999999999999999999988875
No 99
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=76.89 E-value=3.4 Score=40.15 Aligned_cols=48 Identities=25% Similarity=0.515 Sum_probs=41.2
Q ss_pred hhhHHHHHHHhcCCCCeeeEEeecCCCe-------------------EEEEeCCCCCCHHHHHHHHH
Q 003131 140 AACVNSVEGILRGLPGVKRAVVALATSL-------------------GEVEYDPTVISKDDIANAIE 187 (845)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~~-------------------~~v~~~~~~~~~~~i~~~i~ 187 (845)
+.|-|-+|..+.+++||.++.+-++.+. +.|.|||..++.++|++..=
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff 81 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFF 81 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHH
Confidence 4588889999999999999998877663 88999999999999988653
No 100
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=76.40 E-value=4.8 Score=41.14 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=35.8
Q ss_pred CCCChhHHHHHHHHHhCCCeEEEEcC----CCHHHHHHHHHHcCC
Q 003131 803 DPVKREAAVVVEGLLKMGVRPVMVTG----DNWRTAHAVAREVCV 843 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~v~mlTG----D~~~tA~~iA~~~GI 843 (845)
-.+.+++++.++.|++.|+++.++|| -...|+..+.+..||
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gi 157 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHI 157 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCC
Confidence 34778899999999999999999999 457799999998988
No 101
>PRK09577 multidrug efflux protein; Reviewed
Probab=76.40 E-value=2e+02 Score=36.70 Aligned_cols=144 Identities=16% Similarity=0.189 Sum_probs=79.3
Q ss_pred EEEEeCCCCchh----hHHHHHHhhhCCCCceEEEEEeecc--EEEEEECCCCCCH----HHHHHHHHhcC--cchhhhc
Q 003131 48 IQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALLQN--KADVVFDPDLVKD----EDIKNAIEDAG--FEAEILA 115 (845)
Q Consensus 48 ~~~~v~gm~C~~----C~~~ie~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~----~~i~~~i~~~G--y~~~~~~ 115 (845)
+...-+|.+-.. -...+|++++.++|+.++...-..+ ...+.++.+ .+. .++.+.+.... .......
T Consensus 45 V~t~~pGasp~~VE~~Vt~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g-~d~~~a~~~V~~~v~~~~~~LP~~~~~ 123 (1032)
T PRK09577 45 IYATYPGASAQVVEESVTALIEREMNGAPGLLYTSATSSAGQASLSLTFKQG-VNADLAAVEVQNRLKTVEARLPEPVRR 123 (1032)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHHhCCccccc
Confidence 344445665433 4456788899999999877654343 444556543 233 34555555432 1111000
Q ss_pred ccCCC-CCCCCceeeeccccCC--ccch---h-hHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCC-----CCCHHHHH
Q 003131 116 ESSTS-GPKPQGTIVGQYTIGG--MTCA---A-CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPT-----VISKDDIA 183 (845)
Q Consensus 116 ~~~~~-~~~~~~~~~~~~~v~g--m~C~---~-C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~-----~~~~~~i~ 183 (845)
+.... .........+.+..++ .+-. . -.+.++..|++++||.+++++-....+.|..||. .++..++.
T Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~ 203 (1032)
T PRK09577 124 DGIQVEKAADNIQLIVSLTSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIA 203 (1032)
T ss_pred CCceEeccCCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHH
Confidence 00000 0000001112222221 1101 1 1367899999999999999987666777877874 37888999
Q ss_pred HHHHhcCCc
Q 003131 184 NAIEDAGFE 192 (845)
Q Consensus 184 ~~i~~~G~~ 192 (845)
+.|+..+.+
T Consensus 204 ~~l~~~n~~ 212 (1032)
T PRK09577 204 SAVRAHNAR 212 (1032)
T ss_pred HHHHHhCCc
Confidence 999876544
No 102
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=76.26 E-value=4.8 Score=40.57 Aligned_cols=40 Identities=8% Similarity=0.030 Sum_probs=36.8
Q ss_pred CCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcC
Q 003131 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVC 842 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~G 842 (845)
-+++|++.+.++.|++.|+++.++||........+.+.++
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 108 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIV 108 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhC
Confidence 4789999999999999999999999999999998888764
No 103
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=76.00 E-value=4.4 Score=40.12 Aligned_cols=43 Identities=14% Similarity=0.049 Sum_probs=38.8
Q ss_pred eCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 802 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
.+++.+.++++++.|++.|+++.++||-....+..+-+.+|+.
T Consensus 104 ~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~ 146 (197)
T TIGR01548 104 EDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE 146 (197)
T ss_pred ccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch
Confidence 4557777899999999999999999999999999999999975
No 104
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=74.83 E-value=5.5 Score=41.55 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=39.3
Q ss_pred CCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
-++||++.+.++.|++.|+++.++||=....+..+.+++|+.
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~ 161 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVY 161 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCC
Confidence 467999999999999999999999999999999999999984
No 105
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=74.78 E-value=22 Score=24.57 Aligned_cols=41 Identities=46% Similarity=0.710 Sum_probs=32.3
Q ss_pred EeCCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEEC
Q 003131 51 GVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFD 91 (845)
Q Consensus 51 ~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~ 91 (845)
.+.++.|..|...++..+...+++.....++......+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYD 43 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEEC
Confidence 36788999999999999888888877777776666555553
No 106
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=73.94 E-value=5.7 Score=40.13 Aligned_cols=38 Identities=8% Similarity=-0.015 Sum_probs=35.7
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHc
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREV 841 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~ 841 (845)
+++|++.+.++.|++.|+++.++||-....+..+.+.+
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 68999999999999999999999999999999888876
No 107
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=73.59 E-value=4.9 Score=42.21 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=38.7
Q ss_pred eCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 802 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
..++.|++.++++.|++.|+++.++|+-+...+..+.++.||.
T Consensus 99 ~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~ 141 (272)
T PRK13223 99 LTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIG 141 (272)
T ss_pred CCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcH
Confidence 3578999999999999999999999999999999888888874
No 108
>PTZ00445 p36-lilke protein; Provisional
Probab=73.56 E-value=5.2 Score=39.53 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=48.1
Q ss_pred hHHHHHHHHHccCeEEEEEECCeEEEE--EEeeCC----------CChhHHHHHHHHHhCCCeEEEEcCCCHHH
Q 003131 772 VESFVVELEESARTGILVAYDDNLIGV--MGIADP----------VKREAAVVVEGLLKMGVRPVMVTGDNWRT 833 (845)
Q Consensus 772 ~~~~~~~~~~~g~~~l~va~~~~~lG~--~~~~D~----------lr~~~~~~I~~L~~~gi~v~mlTGD~~~t 833 (845)
...+.+.+.+.|-+++++-.|.++++. =+.-++ ++|+.+..+++|+++||++.++|=-.+.+
T Consensus 31 ~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 31 ADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred HHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 445667788999999999999887761 112333 79999999999999999999999554433
No 109
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=73.50 E-value=6.4 Score=37.35 Aligned_cols=48 Identities=33% Similarity=0.529 Sum_probs=40.4
Q ss_pred hhhHHHHHHHhcCCCCeeeEEeecCCC-------------------eEEEEeCCCCCCHHHHHHHHH
Q 003131 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIE 187 (845)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~ 187 (845)
+.|-|-+|+.+.+++||.++.+-++.+ .+.|.|||..++.++|++..=
T Consensus 13 gGCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff 79 (174)
T COG0225 13 GGCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFF 79 (174)
T ss_pred ccCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHh
Confidence 468888999999999999988766555 578999999999999988663
No 110
>PLN02645 phosphoglycolate phosphatase
Probab=73.29 E-value=4.1 Score=43.77 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=46.5
Q ss_pred cCeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH---HHcCCC
Q 003131 783 ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA---REVCVI 844 (845)
Q Consensus 783 g~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA---~~~GI~ 844 (845)
.++.+.+-.|+++. -.+.+=++++++|++||+.|++++++|+....+...++ +++|+.
T Consensus 27 ~~~~~~~D~DGtl~----~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~ 87 (311)
T PLN02645 27 SVETFIFDCDGVIW----KGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN 87 (311)
T ss_pred hCCEEEEeCcCCeE----eCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 36677777777764 34566799999999999999999999999977777776 557763
No 111
>PRK13748 putative mercuric reductase; Provisional
Probab=72.89 E-value=11 Score=44.44 Aligned_cols=65 Identities=28% Similarity=0.541 Sum_probs=53.8
Q ss_pred cccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeec
Q 003131 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQ 197 (845)
Q Consensus 132 ~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~ 197 (845)
+.+++++|++|..+++..+...+++....+++..+...+.+++. .....+...+++.||......
T Consensus 4 i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~-~~~~~i~~~i~~~g~~~~~~~ 68 (561)
T PRK13748 4 LKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVG-TSPDALTAAVAGLGYRATLAD 68 (561)
T ss_pred EEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCC-CCHHHHHHHHHHcCCeeeccC
Confidence 45789999999999999999999999999999999988888653 466677677788999876543
No 112
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=72.27 E-value=4 Score=38.98 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=38.5
Q ss_pred eCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 802 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
..++.+++.+.++.|++.|++++++|+-+......+.+++|+.
T Consensus 75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~ 117 (176)
T PF13419_consen 75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD 117 (176)
T ss_dssp GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG
T ss_pred ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc
Confidence 3467899999999999999999999999999999999888864
No 113
>PRK08238 hypothetical protein; Validated
Probab=72.11 E-value=6.3 Score=44.89 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=38.2
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCV 843 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI 843 (845)
|++|++.+.++++++.|+++.++|+=+...+..+++.+|+
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl 111 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL 111 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 4789999999999999999999999999999999999997
No 114
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=71.97 E-value=7.4 Score=39.09 Aligned_cols=40 Identities=15% Similarity=-0.037 Sum_probs=36.1
Q ss_pred CCChhHHHHHH-HHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 003131 804 PVKREAAVVVE-GLLKMGVRPVMVTGDNWRTAHAVAREVCV 843 (845)
Q Consensus 804 ~lr~~~~~~I~-~L~~~gi~v~mlTGD~~~tA~~iA~~~GI 843 (845)
.++|++.++|+ .++++|++++++|+=....+..+|+..|+
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~ 134 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNF 134 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccc
Confidence 57999999996 88999999999999999999999988544
No 115
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=71.90 E-value=8 Score=36.23 Aligned_cols=47 Identities=30% Similarity=0.509 Sum_probs=39.2
Q ss_pred hhhHHHHHHHhcCCCCeeeEEeecCCC-------------------eEEEEeCCCCCCHHHHHHHH
Q 003131 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAI 186 (845)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i 186 (845)
+.|-|-+|..+.+++||.++.+-++.+ .+.|.|||..++.++|++..
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f 72 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVF 72 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHH
Confidence 468899999999999999887755433 57899999999999998855
No 116
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=71.74 E-value=5.6 Score=37.03 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=31.1
Q ss_pred HHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 811 VVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 811 ~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
--|+.|+++||++-+|||-+...+..=|+++||.
T Consensus 42 ~Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~ 75 (170)
T COG1778 42 HGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIK 75 (170)
T ss_pred HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCc
Confidence 4688999999999999999999999999999986
No 117
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=71.64 E-value=6.7 Score=35.83 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=34.0
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCC-CHHHHHHHHHHcC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGD-NWRTAHAVAREVC 842 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD-~~~tA~~iA~~~G 842 (845)
++.+++.++++.|++.|+++.++|+- .+..+..+-+..|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 58999999999999999999999999 7777777666655
No 118
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=71.57 E-value=5.6 Score=40.14 Aligned_cols=41 Identities=15% Similarity=-0.025 Sum_probs=36.4
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.+++++|++.|+++.++|+=+...+...-+.+|+.
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~ 134 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVR 134 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChH
Confidence 58899999999999999999999998888888877888764
No 119
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=71.51 E-value=6 Score=40.98 Aligned_cols=41 Identities=20% Similarity=0.110 Sum_probs=36.8
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.++++.|++.|+++.++|+.....+..+-+++|+.
T Consensus 99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~ 139 (253)
T TIGR01422 99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQ 139 (253)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhc
Confidence 46799999999999999999999999999998888877764
No 120
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=71.42 E-value=6.6 Score=37.73 Aligned_cols=49 Identities=24% Similarity=0.286 Sum_probs=41.6
Q ss_pred hhhHHHHhhhccCCCceEEEeecCCCe-------------------EEEEeCCCCCChhhHHHhhhhc
Q 003131 215 LDAHFLEGILSNFKGVRQFRFDKISGE-------------------LEVLFDPEALSSRSLVDGIAGR 263 (845)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~v~~~~~~-------------------~~V~~d~~~~~~~~i~~~i~~~ 263 (845)
.|-.-+|..+.+++||.++.+-.+++. +.|.|||+.++.++|++..-..
T Consensus 11 GCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~ 78 (172)
T PRK14054 11 GCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQI 78 (172)
T ss_pred CChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHh
Confidence 577788999999999999998777654 7899999999999999876544
No 121
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=71.40 E-value=6 Score=38.36 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=33.7
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.+.++.|++.|+++.++|+-.... ..+..++|+.
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~ 124 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLR 124 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCH
Confidence 688999999999999999999999988777 5555557763
No 122
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=71.18 E-value=7 Score=41.06 Aligned_cols=41 Identities=7% Similarity=0.017 Sum_probs=38.5
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.++++.|++.|+++.++|+.+...+..+-+..|+.
T Consensus 142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~ 182 (273)
T PRK13225 142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLR 182 (273)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh
Confidence 67899999999999999999999999999999999999875
No 123
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=71.06 E-value=5.4 Score=42.56 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=40.8
Q ss_pred eeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 801 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 801 ~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
..+++.+++.++++.|++.|+++.++||-...++..+.+.+|+.
T Consensus 184 ~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~ 227 (300)
T PHA02530 184 KEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQT 227 (300)
T ss_pred ccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHc
Confidence 67899999999999999999999999999999999998887764
No 124
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=70.87 E-value=7.6 Score=39.27 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=40.5
Q ss_pred eCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 802 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
...+=|+++++++.|+++|++..++|+++...+..+.+..|+.
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~ 129 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLA 129 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCc
Confidence 5678899999999999999999999999999999999999985
No 125
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=70.68 E-value=9.3 Score=36.11 Aligned_cols=49 Identities=35% Similarity=0.543 Sum_probs=40.8
Q ss_pred hhhHHHHHHHhcCCCCeeeEEeecCCC-------------------eEEEEeCCCCCCHHHHHHHHHh
Q 003131 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIED 188 (845)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~~ 188 (845)
+.|-|..|..+.+++||.++.+-++.+ .+.|.|||..++.++|++..=+
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~ 74 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFR 74 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHH
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHH
Confidence 468999999999999999998877655 5789999999999999886643
No 126
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=70.63 E-value=8 Score=39.55 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=34.4
Q ss_pred CChhHHHHHHHHHhCCCeEEEEcCC----CHHHHHHHHHHcCCC
Q 003131 805 VKREAAVVVEGLLKMGVRPVMVTGD----NWRTAHAVAREVCVI 844 (845)
Q Consensus 805 lr~~~~~~I~~L~~~gi~v~mlTGD----~~~tA~~iA~~~GI~ 844 (845)
+.+.+++.++.|++.|+++.++|+= ...++..+.+.+||+
T Consensus 115 p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~ 158 (237)
T TIGR01672 115 PKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIP 158 (237)
T ss_pred chhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCc
Confidence 3444999999999999999999985 677999999999986
No 127
>PRK13748 putative mercuric reductase; Provisional
Probab=70.53 E-value=14 Score=43.43 Aligned_cols=64 Identities=27% Similarity=0.510 Sum_probs=51.0
Q ss_pred EEeCCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEECCCCCCHHHHHHHHHhcCcchhhh
Q 003131 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEIL 114 (845)
Q Consensus 50 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 114 (845)
+.++||+|++|...++..+...+++....+++..+...+.+++ ......+...++++||..++.
T Consensus 4 i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~-~~~~~~i~~~i~~~g~~~~~~ 67 (561)
T PRK13748 4 LKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEV-GTSPDALTAAVAGLGYRATLA 67 (561)
T ss_pred EEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECC-CCCHHHHHHHHHHcCCeeecc
Confidence 5689999999999999999999999999999888887777643 245566666677888876543
No 128
>PRK11590 hypothetical protein; Provisional
Probab=70.23 E-value=8.3 Score=38.72 Aligned_cols=40 Identities=13% Similarity=-0.039 Sum_probs=36.7
Q ss_pred CCChhHHHHH-HHHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 003131 804 PVKREAAVVV-EGLLKMGVRPVMVTGDNWRTAHAVAREVCV 843 (845)
Q Consensus 804 ~lr~~~~~~I-~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI 843 (845)
.++|++.+.| +.|++.|++++++|+-....+..+++.+|+
T Consensus 95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~ 135 (211)
T PRK11590 95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPW 135 (211)
T ss_pred cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccc
Confidence 5589999999 678999999999999999999999999884
No 129
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=69.55 E-value=9.4 Score=36.69 Aligned_cols=60 Identities=18% Similarity=0.112 Sum_probs=42.1
Q ss_pred eEEEEEECCeEEEEEE------eeCC---CChhHHHHHHHHHhCCCeEEEEcCCCHH------------HHHHHHHHcCC
Q 003131 785 TGILVAYDDNLIGVMG------IADP---VKREAAVVVEGLLKMGVRPVMVTGDNWR------------TAHAVAREVCV 843 (845)
Q Consensus 785 ~~l~va~~~~~lG~~~------~~D~---lr~~~~~~I~~L~~~gi~v~mlTGD~~~------------tA~~iA~~~GI 843 (845)
+.+++-.|++++-... -.++ +-|++.++++.|++.|+++.++|.-... ....+-+.+|+
T Consensus 14 k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl 93 (166)
T TIGR01664 14 KVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKV 93 (166)
T ss_pred cEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCC
Confidence 5677778888764321 1122 3499999999999999999999965432 35566677776
Q ss_pred C
Q 003131 844 I 844 (845)
Q Consensus 844 ~ 844 (845)
.
T Consensus 94 ~ 94 (166)
T TIGR01664 94 P 94 (166)
T ss_pred C
Confidence 3
No 130
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=69.17 E-value=7.6 Score=39.54 Aligned_cols=41 Identities=12% Similarity=-0.061 Sum_probs=37.0
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.++++.|++.|+++.++|+.+...+..+-+..|+.
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~ 135 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWE 135 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCch
Confidence 67899999999999999999999999998888887888764
No 131
>PLN02887 hydrolase family protein
Probab=69.02 E-value=8.8 Score=44.73 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=50.4
Q ss_pred cCeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 783 ARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 783 g~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
..+.+++-.||+++.- ...+-+.++++|++|++.|+++++.||=....+..+.+++|+.
T Consensus 307 ~iKLIa~DLDGTLLn~---d~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 307 KFSYIFCDMDGTLLNS---KSQISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred CccEEEEeCCCCCCCC---CCccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 3567778889998742 3358999999999999999999999999999999999998863
No 132
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=69.02 E-value=2.3e+02 Score=34.01 Aligned_cols=72 Identities=26% Similarity=0.244 Sum_probs=51.1
Q ss_pred CCChhhHHHHHHHHHccCeEEEEEECC--------eEEEEEEeeCCCChhH-HHHHHHHHhCCCeEEEEcCCCHHHHHHH
Q 003131 767 TIPDHVESFVVELEESARTGILVAYDD--------NLIGVMGIADPVKREA-AVVVEGLLKMGVRPVMVTGDNWRTAHAV 837 (845)
Q Consensus 767 ~~~~~~~~~~~~~~~~g~~~l~va~~~--------~~lG~~~~~D~lr~~~-~~~I~~L~~~gi~v~mlTGD~~~tA~~i 837 (845)
+++++..+.++++.+.|.+++.+.-|. +-+|+-.+.-.+.|+- .+.|+.||+.| +++..|||-..=|-++
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK~~iV~~lQ~~G-~~VaMtGDGvNDAPAL 519 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDKINVIREEQAKG-HIVAMTGDGTNDAPAL 519 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHHHHHHHHHHhCC-CEEEEECCChhhHHHH
Confidence 355667788889999999987665443 2356554444555555 47789999888 6678899988877776
Q ss_pred HH
Q 003131 838 AR 839 (845)
Q Consensus 838 A~ 839 (845)
++
T Consensus 520 a~ 521 (673)
T PRK14010 520 AE 521 (673)
T ss_pred Hh
Confidence 65
No 133
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=68.95 E-value=8.7 Score=37.19 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=40.6
Q ss_pred EEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcC-CCHHHHHHHHHHcCCC
Q 003131 795 LIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTG-DNWRTAHAVAREVCVI 844 (845)
Q Consensus 795 ~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTG-D~~~tA~~iA~~~GI~ 844 (845)
......-+-++.|++.++++.|+++|+++.++|+ |....+..+-..+||.
T Consensus 36 ~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~ 86 (174)
T TIGR01685 36 IIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEIT 86 (174)
T ss_pred EEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcC
Confidence 3344444557789999999999999999999996 4888988888888764
No 134
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=68.74 E-value=7.5 Score=39.20 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=39.0
Q ss_pred CCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
.++.+++.+.++.|++.|+++.++|+-....+..+-+.+|+.
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~ 127 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWT 127 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhh
Confidence 489999999999999999999999999999999999888874
No 135
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=68.59 E-value=6.7 Score=40.34 Aligned_cols=57 Identities=7% Similarity=-0.023 Sum_probs=42.0
Q ss_pred CeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHH--HHHHHcCCC
Q 003131 784 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH--AVAREVCVI 844 (845)
Q Consensus 784 ~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~--~iA~~~GI~ 844 (845)
++.+.+-.|+++ .-.+.+-|++++++++|+++|+++.++|.-....+. ...+++|+.
T Consensus 8 ~~~~~~D~dG~l----~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~ 66 (242)
T TIGR01459 8 YDVFLLDLWGVI----IDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGIN 66 (242)
T ss_pred CCEEEEeccccc----ccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCC
Confidence 445555555544 346778999999999999999999999995554443 455777774
No 136
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=68.08 E-value=8.4 Score=36.12 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=32.8
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCH---------------HHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNW---------------RTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~---------------~tA~~iA~~~GI~ 844 (845)
++.|++.++++.|++.|+++.++|..+. .....+.+.+|+.
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 82 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVA 82 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCc
Confidence 4689999999999999999999998762 3455566677763
No 137
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=68.05 E-value=7.9 Score=40.32 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=37.9
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.+++.++++.|++.|+++.++|+-....+..+-+.+|+.
T Consensus 109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~ 149 (260)
T PLN03243 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGME 149 (260)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCH
Confidence 57899999999999999999999999999999998888874
No 138
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=68.01 E-value=3.5e+02 Score=34.61 Aligned_cols=141 Identities=14% Similarity=0.180 Sum_probs=79.4
Q ss_pred EEEEeCCCCch----hhHHHHHHhhhCCCCceEEEEEe---eccEEEEEECCCCCCH----HHHHHHHHhcC--cchhhh
Q 003131 48 IQVGVTGMTCA----ACSNSVEGALMGLKGVAKASVAL---LQNKADVVFDPDLVKD----EDIKNAIEDAG--FEAEIL 114 (845)
Q Consensus 48 ~~~~v~gm~C~----~C~~~ie~~l~~~~gv~~~~v~~---~~~~~~v~~~~~~~~~----~~i~~~i~~~G--y~~~~~ 114 (845)
+...-+|.+-. .-...+|++++.++|+.+++-.- ..+.+.+.++.+ .+. .++.+.+.... +....
T Consensus 45 V~t~ypGasp~~vE~~Vt~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g-~d~~~a~~~V~~~i~~~~~~LP~~~- 122 (1049)
T PRK15127 45 ISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESG-TDADIAQVQVQNKLQLAMPLLPQEV- 122 (1049)
T ss_pred EEEEeCCCCHHHHHHHhhHHHHHHhcCCCCceEEEEEecCCceEEEEEEEECC-CChHHHHHHHHHHHHHHHhhCCCcc-
Confidence 33444555432 34566788899999999998643 234566677654 344 35555555432 21110
Q ss_pred cccCCCCCCCCceeeeccccCC----ccc-hhh---HHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCC-----CCCHHH
Q 003131 115 AESSTSGPKPQGTIVGQYTIGG----MTC-AAC---VNSVEGILRGLPGVKRAVVALATSLGEVEYDPT-----VISKDD 181 (845)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~v~g----m~C-~~C---~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~-----~~~~~~ 181 (845)
+................+.+.+ +.- .-+ .+.++..|++++||.++++.-..+.+.|..||. .+++.+
T Consensus 123 ~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~ 202 (1049)
T PRK15127 123 QQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVD 202 (1049)
T ss_pred cCCCcEEecCCCCceEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHH
Confidence 0000000000000011122211 111 112 356889999999999999986667799999985 378889
Q ss_pred HHHHHHhcC
Q 003131 182 IANAIEDAG 190 (845)
Q Consensus 182 i~~~i~~~G 190 (845)
+.++|+...
T Consensus 203 V~~~l~~~n 211 (1049)
T PRK15127 203 VINAIKAQN 211 (1049)
T ss_pred HHHHHHHhC
Confidence 999998653
No 139
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=67.70 E-value=9.6 Score=39.63 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=32.1
Q ss_pred CChhHHHHHHHHHhCCCeEEEEcCCCHHHH---HHHHHHcCCC
Q 003131 805 VKREAAVVVEGLLKMGVRPVMVTGDNWRTA---HAVAREVCVI 844 (845)
Q Consensus 805 lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA---~~iA~~~GI~ 844 (845)
+=|++.++|++||+.|++++++||.+..+. ...-+++|++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 788999999999999999999999777653 3334456653
No 140
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=66.96 E-value=9.3 Score=39.49 Aligned_cols=41 Identities=10% Similarity=-0.004 Sum_probs=38.1
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.++++.|++.|+++.++|+-+...+..+-+.+||.
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~ 148 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLS 148 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCh
Confidence 57899999999999999999999999999999999988875
No 141
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=66.85 E-value=9.5 Score=37.92 Aligned_cols=40 Identities=13% Similarity=0.068 Sum_probs=36.8
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++++.++.|+++ +++.++|+-....+..+.+++||.
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~ 107 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWP 107 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCc
Confidence 4589999999999999 999999999999999999999975
No 142
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=66.49 E-value=1.4e+02 Score=38.02 Aligned_cols=20 Identities=15% Similarity=-0.016 Sum_probs=18.5
Q ss_pred CCEEEEcCCCccCccEEEEe
Q 003131 462 GDTLKVLPGTKLPADGIVVW 481 (845)
Q Consensus 462 GDii~v~~G~~vPaDg~ll~ 481 (845)
|....++..|.+|=|.++++
T Consensus 94 ~~~~~i~~~~l~~GDiv~l~ 113 (1057)
T TIGR01652 94 GQFVEIPWKDLRVGDIVKVK 113 (1057)
T ss_pred CcEEEeeeecccCCCEEEEc
Confidence 68889999999999999997
No 143
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=65.13 E-value=8.1 Score=37.60 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=33.9
Q ss_pred CCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
-++.|++.++++.|++.|+++.++|+- ..+..+-+..|+.
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~ 126 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLT 126 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChH
Confidence 478999999999999999999999986 5567777777763
No 144
>PRK11587 putative phosphatase; Provisional
Probab=63.52 E-value=10 Score=38.15 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=33.8
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCV 843 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI 843 (845)
++.|++.++++.|++.|+++.++|+.+...+...-+..|+
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l 122 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL 122 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC
Confidence 5789999999999999999999999887766665556665
No 145
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=62.80 E-value=1.3e+02 Score=37.87 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=28.5
Q ss_pred chHHHHHHHHhhhheeecccccchhhHHHHHHHHHH
Q 003131 592 THFVFALMFSISVVVIACPCALGLATPTAVMVATGV 627 (845)
Q Consensus 592 ~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~ 627 (845)
..+..++...++....+.|.++++++..+.....++
T Consensus 325 ~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~mak~ 360 (941)
T TIGR01517 325 DHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMMKD 360 (941)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhC
Confidence 457778888888888899999999988887665543
No 146
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=61.78 E-value=12 Score=38.96 Aligned_cols=48 Identities=27% Similarity=0.433 Sum_probs=40.7
Q ss_pred chhhHHHHHHHhcCCCCeeeEEeecCCC-------------------eEEEEeCCCCCCHHHHHHHH
Q 003131 139 CAACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAI 186 (845)
Q Consensus 139 C~~C~~~ie~~l~~~~GV~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i 186 (845)
.+.|-|-+|..+.+++||.++.+-++.+ .+.|+|||..++.++|++..
T Consensus 133 agGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F 199 (283)
T PRK05550 133 AGGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVF 199 (283)
T ss_pred ecCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHH
Confidence 3568899999999999999988876654 38899999999999998865
No 147
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=61.10 E-value=2e+02 Score=36.38 Aligned_cols=201 Identities=12% Similarity=0.054 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHccCCCe----EEEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEEEEe
Q 003131 406 TFVLFGKYLEILAKGKTSDAIKKLVELAPAT----ALLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGIVVW 481 (845)
Q Consensus 406 ~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~----~~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~ 481 (845)
++..+-.+.+.+..+++.++++++....... ....+.-.+=..+....+...+.+|.|.+.++.. .+=+|=-.+.
T Consensus 115 ~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~lv~GDiv~l~~Gd~IPaD~~il~~~-~l~VdeS~LT 193 (997)
T TIGR01106 115 IITGCFSYYQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISAQ-GCKVDNSSLT 193 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHCCCCCEEEECCCCEEeeeEEEEEcc-CcEEEccccC
Confidence 3333334455555667777788764332211 1111111111111457788889999999988764 2445555566
Q ss_pred ccee-eeccccCCcceee----eccCCCceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhc-cCChhhHHHHHHh
Q 003131 482 GTSY-VNESMVTGEAVPV----LKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQM-SKAPIQKFADFVA 555 (845)
Q Consensus 482 G~~~-Vdes~LTGEs~pv----~k~~~~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~-~~~~~~~~~~~~~ 555 (845)
|++. |.-..-.-+..|. .--.|..+..|+...-=...+.=+..|.- .++.+..+..+. -...+++..+.+.
T Consensus 194 GES~pv~K~~~~~~~~~~~~~n~l~~Gt~v~~G~~~~~V~~tG~~T~~g~i---~~~~~~~~~~~~pl~~~~~~~~~~~~ 270 (997)
T TIGR01106 194 GESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRI---ASLASGLENGKTPIAIEIEHFIHIIT 270 (997)
T ss_pred CCCCceeccCCCcccCccccCCeEEeccEeeeeeEEEEEEEccccchhhHH---HhhhhhcccCCCcHHHHHHHHHHHHH
Confidence 6665 3222110011121 11246667777532110111111222221 122221111111 1124566667776
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHH
Q 003131 556 SIFVPIVVTLALFTWLCW-YVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVAT 625 (845)
Q Consensus 556 ~~~~~~~~~~a~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~ 625 (845)
.+.+.+.+++.++.++.. .+. ..+..++...++....+.|..+.++...+.....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~m~ 326 (997)
T TIGR01106 271 GVAVFLGVSFFILSLILGYTWL---------------EAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMA 326 (997)
T ss_pred HHHHHHHHHHHHHHHHhcCCHH---------------HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH
Confidence 665555544444433321 111 1234455566666788888888888887765443
No 148
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=61.07 E-value=16 Score=34.51 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=40.4
Q ss_pred hhhHHHHhhhccCCCceEEEeecCC--------------CeEEEEeCCCCCChhhHHHhhhhc
Q 003131 215 LDAHFLEGILSNFKGVRQFRFDKIS--------------GELEVLFDPEALSSRSLVDGIAGR 263 (845)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~v~~~~--------------~~~~V~~d~~~~~~~~i~~~i~~~ 263 (845)
.|-.-+|..+.+++||.++.+-.++ +.+.|.|||+.++.++|++..-..
T Consensus 9 GCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~~~ 71 (156)
T PRK05528 9 GCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLFEI 71 (156)
T ss_pred CCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHHHh
Confidence 5777788999999999999876654 347899999999999999876553
No 149
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=60.90 E-value=13 Score=38.80 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=34.5
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCV 843 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI 843 (845)
++-|++.++++.|++.|+++.++||.....+..+-+..|+
T Consensus 101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l 140 (267)
T PRK13478 101 TPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAA 140 (267)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhh
Confidence 5679999999999999999999999999888777666554
No 150
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=60.78 E-value=50 Score=26.18 Aligned_cols=55 Identities=24% Similarity=0.358 Sum_probs=40.2
Q ss_pred ccccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceee
Q 003131 131 QYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASF 195 (845)
Q Consensus 131 ~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 195 (845)
++.+.|..|+...-++.+++++++.= ..+.|..|.. ...++|...++..||+...
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~-~~~~di~~~~~~~g~~~~~ 56 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDP-AAVEDIPRWCEENGYEVVE 56 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESST-THHHHHHHHHHHHTEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCc-cHHHHHHHHHHHCCCEEEE
Confidence 45677999999999999999987332 3444555443 4678999999999998544
No 151
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=59.50 E-value=16 Score=37.02 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=35.9
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.++++.|++.|+++.++|.-+...+...-+..|+.
T Consensus 93 ~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~ 133 (224)
T PRK14988 93 VLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD 133 (224)
T ss_pred CcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH
Confidence 67899999999999999999999998888888777777763
No 152
>PTZ00174 phosphomannomutase; Provisional
Probab=59.28 E-value=21 Score=36.80 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=40.6
Q ss_pred CeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q 003131 784 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA 838 (845)
Q Consensus 784 ~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA 838 (845)
.+.+++-.|++++. =..++-+..+++|++|++.|+++++.||-+........
T Consensus 5 ~klia~DlDGTLL~---~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l 56 (247)
T PTZ00174 5 KTILLFDVDGTLTK---PRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQL 56 (247)
T ss_pred CeEEEEECcCCCcC---CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 45667777888752 22358899999999999999999999998888655443
No 153
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=58.64 E-value=51 Score=32.84 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=40.0
Q ss_pred hhhHHHHHHhhhCCCCceEEEEEeecc-------------------EEEEEECCCCCCHHHHHHHHH
Q 003131 58 AACSNSVEGALMGLKGVAKASVALLQN-------------------KADVVFDPDLVKDEDIKNAIE 105 (845)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~ 105 (845)
++|=|.+|..+.+++||.++.+-+..+ .+.|.||+..++.+++.+..=
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff 118 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFW 118 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHH
Confidence 689999999999999999999877633 467889998899888887653
No 154
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=58.58 E-value=14 Score=43.32 Aligned_cols=58 Identities=10% Similarity=0.043 Sum_probs=47.1
Q ss_pred CeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 784 RTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 784 ~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
.+.++.-.|++++.- .+..-+.++++|++|+++|+.+++.||-.......+++++|+.
T Consensus 416 ~KLIfsDLDGTLLd~---d~~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 416 KKIVYTDLDGTLLNP---LTYSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIK 473 (694)
T ss_pred eeEEEEECcCCCcCC---CCccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 356677778887642 2234457899999999999999999999999999999999874
No 155
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=58.05 E-value=14 Score=35.94 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=40.5
Q ss_pred hhhHHHHhhhccCCCceEEEeecCCCe-------------------EEEEeCCCCCChhhHHHhhhhc
Q 003131 215 LDAHFLEGILSNFKGVRQFRFDKISGE-------------------LEVLFDPEALSSRSLVDGIAGR 263 (845)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~v~~~~~~-------------------~~V~~d~~~~~~~~i~~~i~~~ 263 (845)
.|-.-+|..+.+++||.++++-.+++. +.|.|||+.++.++|++..-..
T Consensus 16 GCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~~ 83 (186)
T PRK13014 16 GCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFST 83 (186)
T ss_pred CCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHHh
Confidence 466667888999999999998776643 7899999999999999876553
No 156
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=58.02 E-value=14 Score=35.91 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=31.9
Q ss_pred CCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
.++.|++.++++.|++.|+++.++|+-.. +..+-+.+|+.
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~ 125 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLI 125 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcH
Confidence 36789999999999999999999996432 45566777764
No 157
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=58.01 E-value=82 Score=39.58 Aligned_cols=119 Identities=20% Similarity=0.273 Sum_probs=78.3
Q ss_pred HHHHHHHhcCCCCeeeEEeec--CCCeEEEEeCCCCCCHH----HHHHHHHhcCC--ceee-------eccCCcceeEEE
Q 003131 143 VNSVEGILRGLPGVKRAVVAL--ATSLGEVEYDPTVISKD----DIANAIEDAGF--EASF-------VQSSGQDKILLQ 207 (845)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~~--~~~~~~v~~~~~~~~~~----~i~~~i~~~G~--~~~~-------~~~~~~~~~~~~ 207 (845)
...||+++++++|++..+-.- ....++++|+.+ .+++ ++.+++.+..- .... .+.++..-..+.
T Consensus 63 t~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~-~d~d~A~~~V~~kv~~~~~~LP~~~~~p~v~~~~~~~~~i~~~a 141 (1009)
T COG0841 63 TQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELG-TDPDTAAVQVQNKIQQAESRLPSGVQQPGVTVEKSSSNPLLILA 141 (1009)
T ss_pred hHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCC-CChHHHHHHHHHHHHHHHhcCCCccCCCceEeccCCCceEEEEE
Confidence 467899999999988766443 445667777765 3444 66666664431 1110 111122233455
Q ss_pred Eec--ccc----hhhhHHHHhhhccCCCceEEEeecC-CCeEEEEeCCCC-----CChhhHHHhhhh
Q 003131 208 VTG--VLC----ELDAHFLEGILSNFKGVRQFRFDKI-SGELEVLFDPEA-----LSSRSLVDGIAG 262 (845)
Q Consensus 208 v~g--m~c----~~c~~~ie~~l~~~~gV~~~~v~~~-~~~~~V~~d~~~-----~~~~~i~~~i~~ 262 (845)
+.+ +.- ..-+..++..|...+||.++++.-. ...+.|..||.+ +++.++...|+.
T Consensus 142 l~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ai~~ 208 (1009)
T COG0841 142 LTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSAIRA 208 (1009)
T ss_pred EEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 544 321 1234669999999999999999887 678889999975 788999988875
No 158
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=57.69 E-value=18 Score=37.75 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=46.7
Q ss_pred CeEEEEEECCeEEEEEEe--eCCCChhHHHHHHHHHh-CCCeEEEEcCCCHHHHHHHHHHcCC
Q 003131 784 RTGILVAYDDNLIGVMGI--ADPVKREAAVVVEGLLK-MGVRPVMVTGDNWRTAHAVAREVCV 843 (845)
Q Consensus 784 ~~~l~va~~~~~lG~~~~--~D~lr~~~~~~I~~L~~-~gi~v~mlTGD~~~tA~~iA~~~GI 843 (845)
.+.+++-+|++++-...= .-.+-++++++|++|++ .|+.++++||-.......+.+.+++
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~ 76 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRF 76 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccc
Confidence 467788899998742100 11456899999999998 7999999999999999888876654
No 159
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=57.46 E-value=24 Score=33.82 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=53.1
Q ss_pred HHHccCeEEEEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCC--eEEEEcCC-------CHHHHHHHHHHcCCC
Q 003131 779 LEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGV--RPVMVTGD-------NWRTAHAVAREVCVI 844 (845)
Q Consensus 779 ~~~~g~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi--~v~mlTGD-------~~~tA~~iA~~~GI~ 844 (845)
+.+.|.+.+.+-.|.++.. -=++.+-++..+.+++|++.+. ++.++|-- +...|.++++.+||+
T Consensus 36 Lk~~Gik~li~DkDNTL~~--~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp 108 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTP--PYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP 108 (168)
T ss_pred hhhcCceEEEEcCCCCCCC--CCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc
Confidence 5677888888888888632 3578899999999999999976 49999875 478899999999985
No 160
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=57.42 E-value=88 Score=39.78 Aligned_cols=119 Identities=13% Similarity=0.213 Sum_probs=76.6
Q ss_pred HHHHHHHhcCCCCeeeEEeec---CCCeEEEEeCCCCCCHH----HHHHHHHhc--CCc--ee---e--eccCCcceeEE
Q 003131 143 VNSVEGILRGLPGVKRAVVAL---ATSLGEVEYDPTVISKD----DIANAIEDA--GFE--AS---F--VQSSGQDKILL 206 (845)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~~---~~~~~~v~~~~~~~~~~----~i~~~i~~~--G~~--~~---~--~~~~~~~~~~~ 206 (845)
...+|+++..++||++++-.- ....+.++|+.+. +.+ ++.+.+.+. .+. +. + ....+..-..+
T Consensus 62 t~plE~~l~~v~gv~~i~S~S~~~G~s~i~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~v~~~~~~~~~~~~~~v~~~ 140 (1037)
T PRK10555 62 TQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGT-DPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTI 140 (1037)
T ss_pred hHHHHHHhcCCCCceEEEEEecCCCeEEEEEEEECCC-CHHHHHHHHHHHHHHHHHhCCCccccCCceEeCCCCCceEEE
Confidence 467899999999999988643 3356788887764 443 444444432 111 11 1 11111223344
Q ss_pred EEec----ccch---h-hhHHHHhhhccCCCceEEEeecCCCeEEEEeCCCC-----CChhhHHHhhhh
Q 003131 207 QVTG----VLCE---L-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAG 262 (845)
Q Consensus 207 ~v~g----m~c~---~-c~~~ie~~l~~~~gV~~~~v~~~~~~~~V~~d~~~-----~~~~~i~~~i~~ 262 (845)
.+.+ +.-. . -+..++..|.+.+||.++.++.....+.|..||.+ ++..++.+.++.
T Consensus 141 ~~~~~~~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~~v~~al~~ 209 (1037)
T PRK10555 141 AFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIES 209 (1037)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEcCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
Confidence 5532 2211 1 23668899999999999999877777899999864 788888888874
No 161
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=56.97 E-value=15 Score=35.32 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 811 VVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 811 ~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
..|+.|++.|+++.++|+.+...+..+.+.+|+.
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~ 74 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIK 74 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCc
Confidence 5789999999999999999999999999999985
No 162
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.86 E-value=57 Score=27.24 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=47.4
Q ss_pred eeeccccCCccchhhHHHHHHHhcCCCCeeeEE-----eecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 003131 128 IVGQYTIGGMTCAACVNSVEGILRGLPGVKRAV-----VALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (845)
Q Consensus 128 ~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~-----v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 196 (845)
+++.+.+-..+-..-.-.+...|.+++||+.+. ++..+..+.++.....++.++|.+.|++.|-..+..
T Consensus 6 RRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSi 79 (97)
T COG1888 6 RRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSI 79 (97)
T ss_pred eeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeeh
Confidence 444455444443333445566778888877654 455667777777777789999999999999887753
No 163
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=56.78 E-value=17 Score=34.17 Aligned_cols=43 Identities=9% Similarity=-0.136 Sum_probs=37.6
Q ss_pred eeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 801 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 801 ~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
..-++||++.+.++.|+ .++++.+.|.=+...+..+-+.+|+.
T Consensus 42 ~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~ 84 (148)
T smart00577 42 VYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPK 84 (148)
T ss_pred EEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcC
Confidence 34457999999999999 57999999999999999999888873
No 164
>PLN03017 trehalose-phosphatase
Probab=56.14 E-value=24 Score=38.43 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=47.2
Q ss_pred HHHccCeEEEEEECCeEEEEEEeeC--CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHH
Q 003131 779 LEESARTGILVAYDDNLIGVMGIAD--PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVA 838 (845)
Q Consensus 779 ~~~~g~~~l~va~~~~~lG~~~~~D--~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA 838 (845)
........+++-+||+++-+..-.| .+-++..++|++|. .|+.+.++||-.......+.
T Consensus 106 ~~~~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 106 ASRGKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred HhcCCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 3444456778889999986665433 47899999999999 68999999999999888773
No 165
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=56.07 E-value=22 Score=43.26 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHccCeEEEEEECCeEEEEEEe--eCCCChhHHHHHHHHHh-CCCeEEEEcCCCHHHHHHHHHHcC
Q 003131 771 HVESFVVELEESARTGILVAYDDNLIGVMGI--ADPVKREAAVVVEGLLK-MGVRPVMVTGDNWRTAHAVAREVC 842 (845)
Q Consensus 771 ~~~~~~~~~~~~g~~~l~va~~~~~lG~~~~--~D~lr~~~~~~I~~L~~-~gi~v~mlTGD~~~tA~~iA~~~G 842 (845)
+.+.....+....++.+++-+|++++....- ...+-+++.+++++|.+ .|+.++++||-...........++
T Consensus 479 ~~~~~~~~y~~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~ 553 (726)
T PRK14501 479 AAEEIIARYRAASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLP 553 (726)
T ss_pred CHHHHHHHHHhccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCC
Confidence 3456667777777899999999999864211 12367899999999999 599999999999998877665444
No 166
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=55.63 E-value=16 Score=41.72 Aligned_cols=41 Identities=2% Similarity=-0.115 Sum_probs=38.7
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.++++.|++.|+++.++|+-....+..+-+.+|+.
T Consensus 330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~ 370 (459)
T PRK06698 330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLD 370 (459)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcH
Confidence 68899999999999999999999999999999999998875
No 167
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=55.34 E-value=18 Score=39.79 Aligned_cols=41 Identities=10% Similarity=0.141 Sum_probs=38.0
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.+.++.|++.|+++.++|+-....+..+-+..||.
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~ 256 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIR 256 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCH
Confidence 47799999999999999999999999999999998888874
No 168
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=54.23 E-value=16 Score=33.26 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=33.9
Q ss_pred EEEEECCeEEEE--EE-eeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHH
Q 003131 787 ILVAYDDNLIGV--MG-IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRT 833 (845)
Q Consensus 787 l~va~~~~~lG~--~~-~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~t 833 (845)
+++-.|++++-- =. ..+++.+++.+++++|++.|++++++||=+...
T Consensus 4 i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 4 LVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred EEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 445556666310 00 126688999999999999999999999987654
No 169
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=54.18 E-value=22 Score=31.73 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=29.2
Q ss_pred CChhHHHHHHHHHhCCCe-EEEEcCCCHHHHHHHHHHcCC
Q 003131 805 VKREAAVVVEGLLKMGVR-PVMVTGDNWRTAHAVAREVCV 843 (845)
Q Consensus 805 lr~~~~~~I~~L~~~gi~-v~mlTGD~~~tA~~iA~~~GI 843 (845)
..+.+.+.+++|.+.|++ +|+.+|...+.+...|++.||
T Consensus 64 ~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi 103 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGI 103 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCC
Confidence 456788999999999987 789999999999999999887
No 170
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.96 E-value=83 Score=26.34 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=49.1
Q ss_pred CceEEEEEeCCCCchhhHHHHHHhhhCCCCceEEEEE-----eeccEEEEEECCCCCCHHHHHHHHHhcCcchhh
Q 003131 44 GMRRIQVGVTGMTCAACSNSVEGALMGLKGVAKASVA-----LLQNKADVVFDPDLVKDEDIKNAIEDAGFEAEI 113 (845)
Q Consensus 44 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~-----~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 113 (845)
+.++..+.+---+-..-.--+-+.+++++||+.+++. ..+....+.......+-+++.+.+++.|...+.
T Consensus 4 ~iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHS 78 (97)
T COG1888 4 GIRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHS 78 (97)
T ss_pred cceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeee
Confidence 4455556655555445555666789999999888753 445555555566778889999999999987643
No 171
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=53.54 E-value=26 Score=34.30 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=41.6
Q ss_pred eEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH
Q 003131 794 NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE 840 (845)
Q Consensus 794 ~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~ 840 (845)
.+-|.+.++|..-|++.+++++||.++.+|.-+|--..+.-+.+.++
T Consensus 13 DlSGtLh~e~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~r 59 (262)
T KOG3040|consen 13 DLSGTLHIEDAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHER 59 (262)
T ss_pred eccceEecccccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHH
Confidence 45689999999999999999999999999999998888877777655
No 172
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=53.08 E-value=57 Score=41.47 Aligned_cols=121 Identities=19% Similarity=0.284 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCCCeeeEEeecCCCeE--EEEeCCCCCCHH----HHHHHHHhcC--Cc-----eeeec--cCCcceeEEE
Q 003131 143 VNSVEGILRGLPGVKRAVVALATSLG--EVEYDPTVISKD----DIANAIEDAG--FE-----ASFVQ--SSGQDKILLQ 207 (845)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~~~~~~~--~v~~~~~~~~~~----~i~~~i~~~G--~~-----~~~~~--~~~~~~~~~~ 207 (845)
...+|+++..++|+++++-.-..+.. .++++.+ .+.+ ++.+.+.+.- .. +.+.+ .++..-..+.
T Consensus 62 t~plE~~l~~v~gv~~i~S~s~~g~s~i~v~f~~~-~d~~~a~~~v~~~i~~~~~~LP~~~~~p~i~~~~~~~~~i~~~~ 140 (1021)
T PF00873_consen 62 TKPLEEALSSVEGVKEIRSTSREGSSSITVEFDDG-TDIDEALQEVREKIDQIRSDLPPGVEEPQIFKFDPSDSPIMILA 140 (1021)
T ss_dssp HHHHHHTHCSSTTEEEEEEEETTSEEEEEEEESTT-S-HHHHHHHHHHHHHHHGGGS-HHHHHHEEEEEEEECCEEEEEE
T ss_pred HHHHHHHHcCCCCeEEEEEEecCCcEEEEEEeccc-cCHHHHHHHHHHHHHhhhhhCcccccCCceeeccCCCceeEEEE
Confidence 46789999999999999877776654 5567765 3444 3444444331 11 11111 1122333455
Q ss_pred Eecc----cch---h-hhHHHHhhhccCCCceEEEeec-CCCeEEEEeCCCC-----CChhhHHHhhhhcC
Q 003131 208 VTGV----LCE---L-DAHFLEGILSNFKGVRQFRFDK-ISGELEVLFDPEA-----LSSRSLVDGIAGRS 264 (845)
Q Consensus 208 v~gm----~c~---~-c~~~ie~~l~~~~gV~~~~v~~-~~~~~~V~~d~~~-----~~~~~i~~~i~~~g 264 (845)
+.+- +-. . ....++..|.+.+||.++.+.- ....+.|.+||++ ++..++.+.+....
T Consensus 141 l~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~~~v~~~l~~~n 211 (1021)
T PF00873_consen 141 LTSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSLSDVAQALQANN 211 (1021)
T ss_dssp EEESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--HHHHHHHHHHHS
T ss_pred eccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCHHHHHHHHHHhh
Confidence 5544 211 1 2357899999999999999877 5578899999974 78888888887543
No 173
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=52.84 E-value=23 Score=33.19 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=39.5
Q ss_pred hhhHHHHhhhccCCCceEEEeecCC-------------------CeEEEEeCCCCCChhhHHHhhhhc
Q 003131 215 LDAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAGR 263 (845)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~v~~~~-------------------~~~~V~~d~~~~~~~~i~~~i~~~ 263 (845)
.|---+|..+..++||.++.+-.++ +.+.|.|||..++.++|++..-+.
T Consensus 8 GCFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~~ 75 (149)
T TIGR00401 8 GCFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWEI 75 (149)
T ss_pred CCchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHHh
Confidence 4667788889999999998866543 456899999999999999876553
No 174
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=52.12 E-value=26 Score=37.74 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=46.8
Q ss_pred eEEEEEECCeEEEEEEeeC--------CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH----cCCC
Q 003131 785 TGILVAYDDNLIGVMGIAD--------PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE----VCVI 844 (845)
Q Consensus 785 ~~l~va~~~~~lG~~~~~D--------~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~----~GI~ 844 (845)
+++++--|+++-|-+.-+| ++.+++.++++.|++.|+.+.++|--+...|..+-++ +|+.
T Consensus 4 k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~ 75 (320)
T TIGR01686 4 KVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQA 75 (320)
T ss_pred EEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcH
Confidence 3455555666655554444 4679999999999999999999999999999998887 7663
No 175
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=51.64 E-value=20 Score=36.94 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=44.9
Q ss_pred EEEECCeEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 788 LVAYDDNLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 788 ~va~~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
+.-.|++++.---=..+..|+..++++++++.|+.+++.||=.....+.+.+++++.
T Consensus 5 ~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 5 VSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLL 61 (249)
T ss_pred EEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCC
Confidence 334467776210014567899999999999999999999999999999999988864
No 176
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=51.59 E-value=5.7e+02 Score=32.62 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=71.1
Q ss_pred hHHHHHHhhhCCCCceEEEEEee-----ccEEEEEECCCC---CCHHHHHHHHHhc-C-c-chhhhcccCCC-C-CCCCc
Q 003131 60 CSNSVEGALMGLKGVAKASVALL-----QNKADVVFDPDL---VKDEDIKNAIEDA-G-F-EAEILAESSTS-G-PKPQG 126 (845)
Q Consensus 60 C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~~---~~~~~i~~~i~~~-G-y-~~~~~~~~~~~-~-~~~~~ 126 (845)
-...+++.+++.|+|.++..... ..+..+...+.. .+.+++.+.+.+. . + .+......... . .....
T Consensus 578 ~~~~~~~~l~~~~~V~~v~~~~g~~~~~~~~~~v~l~~~~~r~~~~~~i~~~lr~~l~~~pg~~~~~~~~~~~~~~g~~~ 657 (1025)
T PRK10614 578 KLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPLSERSETAQQVIDRLRVKLAKEPGANLFLMAVQDIRVGGRQS 657 (1025)
T ss_pred HHHHHHHHHhcCCCeEEEEEEecCCCCceeEEEEEecchhhccCcHHHHHHHHHHHHhcCCCcEEEecCCcccCcCCCCC
Confidence 44556667777888888765422 233455554321 1344555544432 1 1 11110000000 0 00001
Q ss_pred eeeeccccCCccch---hhHHHHHHHhcCCCCeeeEEeecCCC--eEEEEeCCC-----CCCHHHHHHHHHhc
Q 003131 127 TIVGQYTIGGMTCA---ACVNSVEGILRGLPGVKRAVVALATS--LGEVEYDPT-----VISKDDIANAIEDA 189 (845)
Q Consensus 127 ~~~~~~~v~gm~C~---~C~~~ie~~l~~~~GV~~~~v~~~~~--~~~v~~~~~-----~~~~~~i~~~i~~~ 189 (845)
...+.+++.|-+-. .-+..+++.|++.+|+.++..+...+ .+.+..|+. .+++.++.+.++..
T Consensus 658 ~~~i~i~l~G~d~~~L~~~a~~i~~~L~~~pgv~~v~~~~~~~~~el~i~id~~ka~~~Gls~~~v~~~l~~~ 730 (1025)
T PRK10614 658 NASYQYTLLSDDLAALREWEPKIRKALAALPELADVNSDQQDKGAEMALTYDRDTMARLGIDVQAANSLLNNA 730 (1025)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhcCCCeEEeecCCCCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 12345555554332 23678999999999999999875554 777777763 37888998888754
No 177
>PF15584 Imm44: Immunity protein 44
Probab=51.16 E-value=7.5 Score=32.43 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCccCccEEE
Q 003131 461 SGDTLKVLPGTKLPADGIV 479 (845)
Q Consensus 461 ~GDii~v~~G~~vPaDg~l 479 (845)
+.+-..|+.|++|||||+=
T Consensus 13 ~~~~~~I~SG~~iP~~GIw 31 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGIW 31 (94)
T ss_pred CCCCCEEecCCCcccCCeE
Confidence 4556789999999999984
No 178
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=49.87 E-value=22 Score=35.14 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=32.6
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++-|++.++++.|++.|+++.++|.-... ...+-+.+|+.
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~ 144 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLL 144 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcH
Confidence 57899999999999999999999975543 46666777763
No 179
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=48.46 E-value=6.9e+02 Score=31.87 Aligned_cols=143 Identities=17% Similarity=0.233 Sum_probs=78.0
Q ss_pred EEEEEeCCCCchhhH----HHHHHhhhCCCCceEEEEEeecc--EEEEEECCCCCCH----HHHHHHHHhcC--cchhhh
Q 003131 47 RIQVGVTGMTCAACS----NSVEGALMGLKGVAKASVALLQN--KADVVFDPDLVKD----EDIKNAIEDAG--FEAEIL 114 (845)
Q Consensus 47 ~~~~~v~gm~C~~C~----~~ie~~l~~~~gv~~~~v~~~~~--~~~v~~~~~~~~~----~~i~~~i~~~G--y~~~~~ 114 (845)
.+...-+|.+-.... ..+|++++.++|+++++..-..+ ...+.++.+ .+. .++.+.+...- +.....
T Consensus 46 ~V~~~~pGas~~~ve~~vt~piE~~l~~i~gv~~i~S~s~~G~s~i~l~f~~~-~d~~~a~~~v~~~v~~~~~~LP~~~~ 124 (1025)
T PRK10614 46 MVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILQFDFD-RDINGAARDVQAAINAAQSLLPSGMP 124 (1025)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECC-CChHHHHHHHHHHHHHHHhhCCCccC
Confidence 344555566654444 56788999999999997654444 444445443 232 34555554331 110100
Q ss_pred cccCCCCCCCCceeeeccccCC--ccch-h---hHHHHHHHhcCCCCeeeEEeecC-CCeEEEEeCCC-----CCCHHHH
Q 003131 115 AESSTSGPKPQGTIVGQYTIGG--MTCA-A---CVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPT-----VISKDDI 182 (845)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~v~g--m~C~-~---C~~~ie~~l~~~~GV~~~~v~~~-~~~~~v~~~~~-----~~~~~~i 182 (845)
.................+.+.+ +.-. - -.+.++..|++++||.++.+.-. ...+.|.+||+ .+++.++
T Consensus 125 ~~p~~~~~~~~~~pv~~~~~~~~~~~~~~L~~~~~~~l~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~dV 204 (1025)
T PRK10614 125 SRPTYRKANPSDAPIMILTLTSDTYSQGQLYDFASTQLAQTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDV 204 (1025)
T ss_pred CCCEEEecCCCccceeEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHHHH
Confidence 0000000000000011222222 1111 1 13678999999999999998743 34788999885 3688899
Q ss_pred HHHHHhcC
Q 003131 183 ANAIEDAG 190 (845)
Q Consensus 183 ~~~i~~~G 190 (845)
.++|....
T Consensus 205 ~~al~~~~ 212 (1025)
T PRK10614 205 RQAISNAN 212 (1025)
T ss_pred HHHHHHhC
Confidence 99997653
No 180
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=48.30 E-value=22 Score=37.01 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=39.4
Q ss_pred EEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHc
Q 003131 796 IGVMGIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREV 841 (845)
Q Consensus 796 lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~ 841 (845)
=|.+.--+.+=|++.++|++|+++|++++.||--...+...+++++
T Consensus 16 DGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L 61 (269)
T COG0647 16 DGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARL 61 (269)
T ss_pred cCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 3666788999999999999999999999999998888877666553
No 181
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=48.23 E-value=59 Score=25.79 Aligned_cols=54 Identities=24% Similarity=0.344 Sum_probs=40.9
Q ss_pred EEEeCCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEECCCCCCHHHHHHHHHhcCcchh
Q 003131 49 QVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (845)
Q Consensus 49 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (845)
++.+.|+.|+...-.+.+++.+++. .+...+..++. ...+.+...++..||...
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~---------G~~l~v~~d~~-~~~~di~~~~~~~g~~~~ 55 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPP---------GEVLEVLVDDP-AAVEDIPRWCEENGYEVV 55 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGT---------T-EEEEEESST-THHHHHHHHHHHHTEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCC---------CCEEEEEECCc-cHHHHHHHHHHHCCCEEE
Confidence 4778999999999999999998743 24455665544 456889999999999753
No 182
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=48.19 E-value=1.2e+02 Score=36.97 Aligned_cols=34 Identities=24% Similarity=0.084 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhheeecccccchhhHHHHHHHHHH
Q 003131 594 FVFALMFSISVVVIACPCALGLATPTAVMVATGV 627 (845)
Q Consensus 594 ~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~ 627 (845)
...++-....+.--+.|-+|.+.+-.+...--++
T Consensus 419 iirsLDliTi~VPPALPAaltvG~~~a~~RLkkk 452 (1140)
T KOG0208|consen 419 IIRSLDLITIVVPPALPAALTVGIIYAQSRLKKK 452 (1140)
T ss_pred hhhhhcEEEEecCCCchhhhhHHHHHHHHHHHhc
Confidence 3344444444445566666666666665554444
No 183
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=47.80 E-value=24 Score=35.38 Aligned_cols=40 Identities=20% Similarity=0.127 Sum_probs=36.2
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.+++++|++. +++.++|+-....+..+-+++|+.
T Consensus 97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~ 136 (224)
T TIGR02254 97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLF 136 (224)
T ss_pred eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcH
Confidence 5789999999999999 999999999898888888888874
No 184
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=47.72 E-value=29 Score=33.09 Aligned_cols=49 Identities=18% Similarity=0.145 Sum_probs=40.0
Q ss_pred hhhHHHHhhhccCCCceEEEeecCC-------------------CeEEEEeCCCCCChhhHHHhhhhc
Q 003131 215 LDAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAGR 263 (845)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~v~~~~-------------------~~~~V~~d~~~~~~~~i~~~i~~~ 263 (845)
.|-.-+|+.+...+||.++.+-.++ +.+.|.|||+.++.++|++..-+.
T Consensus 14 GCFWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~i 81 (174)
T COG0225 14 GCFWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEI 81 (174)
T ss_pred cCccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHhee
Confidence 4667788999999999999876554 456899999999999999886543
No 185
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=47.25 E-value=52 Score=27.38 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=31.7
Q ss_pred EEeeCCCChhHHHHHHHHHhCCCeEEE-EcCCCHHHHHHHHHHcCCC
Q 003131 799 MGIADPVKREAAVVVEGLLKMGVRPVM-VTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 799 ~~~~D~lr~~~~~~I~~L~~~gi~v~m-lTGD~~~tA~~iA~~~GI~ 844 (845)
+.+.+..++.+.+..+.||+.|+++.+ ..+.+..--..-|.+.|+.
T Consensus 7 i~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~ 53 (91)
T cd00860 7 IPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIP 53 (91)
T ss_pred EeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCC
Confidence 444566777788888888888888766 4566666666667666653
No 186
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=46.91 E-value=7.1e+02 Score=31.57 Aligned_cols=134 Identities=18% Similarity=0.245 Sum_probs=79.3
Q ss_pred hhhHHHHHHhhhCCCCceEEEEEe--eccEEEEEECCCCCCHH----HHHHHHHhcCcch--hhhcccCCCCCCCCc--e
Q 003131 58 AACSNSVEGALMGLKGVAKASVAL--LQNKADVVFDPDLVKDE----DIKNAIEDAGFEA--EILAESSTSGPKPQG--T 127 (845)
Q Consensus 58 ~~C~~~ie~~l~~~~gv~~~~v~~--~~~~~~v~~~~~~~~~~----~i~~~i~~~Gy~~--~~~~~~~~~~~~~~~--~ 127 (845)
..-...+|+++..++|+.+++-.- ....+++.|+.+ .+++ ++.+.+.+..... .. ..+.....+... .
T Consensus 60 ~~Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~-~d~d~A~~~V~~kv~~~~~~LP~~~-~~p~v~~~~~~~~~i 137 (1009)
T COG0841 60 DSVTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELG-TDPDTAAVQVQNKIQQAESRLPSGV-QQPGVTVEKSSSNPL 137 (1009)
T ss_pred HHHhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCC-CChHHHHHHHHHHHHHHHhcCCCcc-CCCceEeccCCCceE
Confidence 346678899999999998876543 444566667544 3444 5666665543221 10 000000000111 1
Q ss_pred eeeccccCCccch----hhHHHHHHHhcCCCCeeeEEeecC-CCeEEEEeCCCC-----CCHHHHHHHHHhcCCce
Q 003131 128 IVGQYTIGGMTCA----ACVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----ISKDDIANAIEDAGFEA 193 (845)
Q Consensus 128 ~~~~~~v~gm~C~----~C~~~ie~~l~~~~GV~~~~v~~~-~~~~~v~~~~~~-----~~~~~i~~~i~~~G~~~ 193 (845)
..+.+.=+.+.-. --...+++.|.+++||.++++.=. ...+.|..||.+ .++.++.++|++.....
T Consensus 138 ~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ai~~qN~~~ 213 (1009)
T COG0841 138 LILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSAIRAQNVQV 213 (1009)
T ss_pred EEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHHHHHHhCccc
Confidence 1122222223211 124668899999999999998765 667889999853 68889999998765544
No 187
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=46.52 E-value=18 Score=36.13 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=25.7
Q ss_pred CCCChhHHHHHHHHHhCCCeEEEEcCCCHH
Q 003131 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWR 832 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~ 832 (845)
-++.|++.++++.|++.|+++.++|.....
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~ 122 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPT 122 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 367899999999999999999999986543
No 188
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=46.24 E-value=39 Score=32.07 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=31.0
Q ss_pred eCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHH
Q 003131 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH 835 (845)
Q Consensus 802 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~ 835 (845)
+|.+.++++++++++++.|++++++||=....+.
T Consensus 25 ~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~ 58 (157)
T smart00775 25 KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQAD 58 (157)
T ss_pred cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHH
Confidence 4788999999999999999999999999888774
No 189
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=46.16 E-value=6e+02 Score=30.58 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=49.4
Q ss_pred CCChhhHHHHHHHHHccCeEEEEEECC--------eEEEEEEeeCCCChh-HHHHHHHHHhCCCeEEEEcCCCHHHHHHH
Q 003131 767 TIPDHVESFVVELEESARTGILVAYDD--------NLIGVMGIADPVKRE-AAVVVEGLLKMGVRPVMVTGDNWRTAHAV 837 (845)
Q Consensus 767 ~~~~~~~~~~~~~~~~g~~~l~va~~~--------~~lG~~~~~D~lr~~-~~~~I~~L~~~gi~v~mlTGD~~~tA~~i 837 (845)
+++++..+.++++.+.|.+++.+.-|. +-+|+-.+.=...|+ =.+.|++||+.| ++++.|||-..=|-++
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~PedK~~iV~~lQ~~G-~~VaMtGDGvNDAPAL 523 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPEDKLALIRQEQAEG-RLVAMTGDGTNDAPAL 523 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHHHHHHHHHHHHHcC-CeEEEECCCcchHHHH
Confidence 345667788889999999987665443 234544344455554 456789999888 5688899977766666
Q ss_pred HH
Q 003131 838 AR 839 (845)
Q Consensus 838 A~ 839 (845)
++
T Consensus 524 a~ 525 (679)
T PRK01122 524 AQ 525 (679)
T ss_pred Hh
Confidence 54
No 190
>PRK09449 dUMP phosphatase; Provisional
Probab=46.10 E-value=30 Score=34.81 Aligned_cols=40 Identities=10% Similarity=-0.040 Sum_probs=34.1
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
++.|++.++++.|+ .|+++.++|......+...-+..|+.
T Consensus 95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~ 134 (224)
T PRK09449 95 TPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLR 134 (224)
T ss_pred ccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChH
Confidence 47899999999999 58999999998888888777777763
No 191
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=45.52 E-value=39 Score=31.98 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=40.4
Q ss_pred hhhHHHHhhhccCCCceEEEeecCC-------------------CeEEEEeCCCCCChhhHHHhhhhcC
Q 003131 215 LDAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAGRS 264 (845)
Q Consensus 215 ~c~~~ie~~l~~~~gV~~~~v~~~~-------------------~~~~V~~d~~~~~~~~i~~~i~~~g 264 (845)
.|-...|..+..++||.+..+-..+ +.+.|.|||..++.++|++..-...
T Consensus 8 GCFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~~ 76 (155)
T PF01625_consen 8 GCFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRIH 76 (155)
T ss_dssp SSHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHHS
T ss_pred CCCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHhc
Confidence 5777789999999999999987654 3568999999999999998866543
No 192
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=45.19 E-value=47 Score=31.46 Aligned_cols=48 Identities=38% Similarity=0.541 Sum_probs=39.6
Q ss_pred hhhHHHHHHHhcCCCCeeeEEeecCCC-------------------eEEEEeCCCCCCHHHHHHHHH
Q 003131 140 AACVNSVEGILRGLPGVKRAVVALATS-------------------LGEVEYDPTVISKDDIANAIE 187 (845)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~-------------------~~~v~~~~~~~~~~~i~~~i~ 187 (845)
+.|-|-+|.+..+++||...+|-++.+ .+.|+|||..++.++|.+..=
T Consensus 31 ~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw 97 (191)
T KOG1635|consen 31 AGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFW 97 (191)
T ss_pred ccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHH
Confidence 468999999999999998888876654 577889999888888888653
No 193
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=44.71 E-value=33 Score=32.72 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=21.7
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGD 829 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD 829 (845)
++-|++.+++++|++.|+++.++|--
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~ 54 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQ 54 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCC
Confidence 35678999999999999999999864
No 194
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=44.37 E-value=36 Score=33.06 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=24.2
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDN 830 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~ 830 (845)
.+.|++.+++++|++.|+++.++|..+
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 357999999999999999999999876
No 195
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=44.32 E-value=1.7e+02 Score=37.41 Aligned_cols=119 Identities=14% Similarity=0.190 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCCCeeeEEeec---CCCeEEEEeCCCCCCHH----HHHHHHHhcC--Ccee-----ee--ccCCcceeEE
Q 003131 143 VNSVEGILRGLPGVKRAVVAL---ATSLGEVEYDPTVISKD----DIANAIEDAG--FEAS-----FV--QSSGQDKILL 206 (845)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~~---~~~~~~v~~~~~~~~~~----~i~~~i~~~G--~~~~-----~~--~~~~~~~~~~ 206 (845)
...+|+.+..++|+++++-.- ....+.++|+.+. +.+ ++.+.+.+.. +... +. ......-..+
T Consensus 62 t~piE~~l~~v~gi~~i~S~S~~~G~s~I~v~f~~g~-d~~~a~~~V~~~i~~~~~~LP~~~~~~~~~~~~~~~~~v~~~ 140 (1049)
T PRK15127 62 TQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGT-DADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVV 140 (1049)
T ss_pred hHHHHHHhcCCCCceEEEEEecCCceEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCcccCCCcEEecCCCCceEEE
Confidence 367899999999999988643 3446778887763 443 4555555431 2211 00 1111112234
Q ss_pred EEec----ccch---h-hhHHHHhhhccCCCceEEEeecCCCeEEEEeCCCC-----CChhhHHHhhhh
Q 003131 207 QVTG----VLCE---L-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAG 262 (845)
Q Consensus 207 ~v~g----m~c~---~-c~~~ie~~l~~~~gV~~~~v~~~~~~~~V~~d~~~-----~~~~~i~~~i~~ 262 (845)
.+.+ +.-. . -...++..|.+.+||.++++......+.|..||.+ ++..++...++.
T Consensus 141 ~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vDp~kl~~~gls~~~V~~~l~~ 209 (1049)
T PRK15127 141 GVINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVINAIKA 209 (1049)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceEEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 4433 1111 1 12468899999999999999877777999999974 788888888873
No 196
>PRK11018 hypothetical protein; Provisional
Probab=43.86 E-value=1.7e+02 Score=23.88 Aligned_cols=57 Identities=18% Similarity=0.118 Sum_probs=42.7
Q ss_pred eccccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 003131 130 GQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (845)
Q Consensus 130 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 196 (845)
..+.+.|..|+.-.-+..++|++++.= ..+.|..|.. .+.++|-..+++.||++...
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~G---------~~L~V~~d~~-~a~~di~~~~~~~G~~v~~~ 65 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKKG---------EILEVVSDCP-QSINNIPLDARNHGYTVLDI 65 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCCC---------CEEEEEeCCc-cHHHHHHHHHHHcCCEEEEE
Confidence 467888999999999999999887532 2334444432 46789999999999998643
No 197
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=43.23 E-value=40 Score=34.06 Aligned_cols=41 Identities=10% Similarity=0.205 Sum_probs=34.3
Q ss_pred eeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHc
Q 003131 801 IADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREV 841 (845)
Q Consensus 801 ~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~ 841 (845)
++-++.+++.+++++|++.|+++.++|..+......+-+..
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~ 132 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHS 132 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhc
Confidence 45679999999999999999999999998877766655443
No 198
>PRK09577 multidrug efflux protein; Reviewed
Probab=42.57 E-value=1.9e+02 Score=36.77 Aligned_cols=120 Identities=13% Similarity=0.221 Sum_probs=73.2
Q ss_pred HHHHHHHhcCCCCeeeEEeecCC--CeEEEEeCCCCCCHH----HHHHHHHhcC--Ccee-------eeccCCcceeEEE
Q 003131 143 VNSVEGILRGLPGVKRAVVALAT--SLGEVEYDPTVISKD----DIANAIEDAG--FEAS-------FVQSSGQDKILLQ 207 (845)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~~~~--~~~~v~~~~~~~~~~----~i~~~i~~~G--~~~~-------~~~~~~~~~~~~~ 207 (845)
...+|+.|..++|+++++-.-.. ..+.++|+.+. +.+ ++.+.+++.. +... ...........+.
T Consensus 62 t~plE~~L~~v~gv~~i~S~S~~G~s~I~v~f~~g~-d~~~a~~~V~~~v~~~~~~LP~~~~~~~~~~~~~~~~~~~~~~ 140 (1032)
T PRK09577 62 TALIEREMNGAPGLLYTSATSSAGQASLSLTFKQGV-NADLAAVEVQNRLKTVEARLPEPVRRDGIQVEKAADNIQLIVS 140 (1032)
T ss_pred HHHHHHHhcCCCCceEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHHhCCcccccCCceEeccCCCceEEEE
Confidence 36789999999999986654444 45666777653 332 4444554321 1111 1111111122344
Q ss_pred Eeccc---c-h---h-hhHHHHhhhccCCCceEEEeecCCCeEEEEeCCCC-----CChhhHHHhhhhc
Q 003131 208 VTGVL---C-E---L-DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAGR 263 (845)
Q Consensus 208 v~gm~---c-~---~-c~~~ie~~l~~~~gV~~~~v~~~~~~~~V~~d~~~-----~~~~~i~~~i~~~ 263 (845)
+.+-. . . . -+..++..|.+.+||.++.++.....+.|..||.+ ++..++.+.++..
T Consensus 141 l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~~~ 209 (1032)
T PRK09577 141 LTSDDGRLTGVELGEYASANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVRAH 209 (1032)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHHHh
Confidence 44321 1 1 1 13578999999999999999887677778888864 7788888888753
No 199
>PLN02940 riboflavin kinase
Probab=42.52 E-value=30 Score=38.28 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=34.5
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH-HcCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR-EVCV 843 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~-~~GI 843 (845)
++.|++.++++.|++.|+++.++|+-....+...-+ ..|+
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl 133 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGW 133 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccCh
Confidence 578999999999999999999999998888776654 5665
No 200
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=42.09 E-value=74 Score=39.67 Aligned_cols=190 Identities=14% Similarity=0.140 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHccCCCeEE----------EEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEE
Q 003131 409 LFGKYLEILAKGKTSDAIKKLVELAPATAL----------LVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGI 478 (845)
Q Consensus 409 ~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~----------v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ 478 (845)
+++.+ +.+...++.++++++........+ ..+.-++=..+....+..-+.+|-|.+.++. .-+=+|=-
T Consensus 126 ~i~~~-qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g-~~l~VDES 203 (903)
T PRK15122 126 LLRFW-QEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIES-RDLFISQA 203 (903)
T ss_pred HHHHH-HHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEc-CceEEEcc
Confidence 44444 444555778888887664433221 1111111111145778888888888888763 33445555
Q ss_pred EEeccee-eecccc------------CCcceee-----eccCCCceeccceeec----c------eEEEEEEEecCccHH
Q 003131 479 VVWGTSY-VNESMV------------TGEAVPV-----LKEINSPVIGGTINLH----G------VLHIQATKVGSDAVL 530 (845)
Q Consensus 479 ll~G~~~-Vdes~L------------TGEs~pv-----~k~~~~~v~aGt~~~~----g------~~~~~v~~~g~~t~~ 530 (845)
.+.|++. |+-... .++..+. .--.|..+..|+...- | .+.-.+...-..|.+
T Consensus 204 ~LTGES~PV~K~~~~~~~~~~~~~~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~~gkI~~~v~~~~~~t~l 283 (903)
T PRK15122 204 VLTGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTYFGSLAKSIVGTRAQTAF 283 (903)
T ss_pred ccCCCCcceeeeccccccccccccccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccHhhHHHHHhcCCCCCCcH
Confidence 5566665 433321 1221111 2345777777763221 1 111111111122322
Q ss_pred HHHHHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecc
Q 003131 531 SQIISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACP 610 (845)
Q Consensus 531 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P 610 (845)
.+- -.++.+.+.+++.++++++++++.+...-|. ..+..++..++.....+.|
T Consensus 284 ~~~----------l~~i~~~l~~~~~~~~~~v~~~~~~~~~~~~-----------------~~l~~aisl~V~~~Pe~Lp 336 (903)
T PRK15122 284 DRG----------VNSVSWLLIRFMLVMVPVVLLINGFTKGDWL-----------------EALLFALAVAVGLTPEMLP 336 (903)
T ss_pred HHH----------HHHHHHHHHHHHHHHHHHhhhhhhhccCCHH-----------------HHHHHHHHHHHHHccchHH
Confidence 211 1245677788888888887777654332221 1244556677777778888
Q ss_pred cccchhhHHHHHHHHHH
Q 003131 611 CALGLATPTAVMVATGV 627 (845)
Q Consensus 611 ~~L~la~p~~~~~~~~~ 627 (845)
.++++++..+.....++
T Consensus 337 ~~vt~~La~g~~~mak~ 353 (903)
T PRK15122 337 MIVSSNLAKGAIAMARR 353 (903)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 88888888776554433
No 201
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=41.81 E-value=45 Score=31.81 Aligned_cols=44 Identities=14% Similarity=-0.077 Sum_probs=38.8
Q ss_pred EeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 800 GIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 800 ~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
.+.=..||++.+.++.|.+. .++++.|--....|..+.+.++..
T Consensus 38 ~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~ 81 (162)
T TIGR02251 38 PVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRG 81 (162)
T ss_pred EEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcC
Confidence 44556899999999999987 999999999999999999988753
No 202
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=41.52 E-value=60 Score=40.02 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=54.1
Q ss_pred hHHHHHHHHHccCeEEEEEECCeEEEEEEeeCCCChhHHHHHHHH-HhCCCeEEEEcCCCHHHHHHHHHH
Q 003131 772 VESFVVELEESARTGILVAYDDNLIGVMGIADPVKREAAVVVEGL-LKMGVRPVMVTGDNWRTAHAVARE 840 (845)
Q Consensus 772 ~~~~~~~~~~~g~~~l~va~~~~~lG~~~~~D~lr~~~~~~I~~L-~~~gi~v~mlTGD~~~tA~~iA~~ 840 (845)
.+.....+.....+.+++-+||+++-.-...-.+-++..+++++| +..|+.+.++||-...+....-..
T Consensus 584 ~~~i~~~y~~~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~ 653 (854)
T PLN02205 584 MEHIVSAYKRTTTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSP 653 (854)
T ss_pred HHHHHHHHHhhcCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCC
Confidence 455667777778899999999999844433345668999999997 667999999999999988776543
No 203
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=41.52 E-value=42 Score=31.34 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=32.0
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHH
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVARE 840 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~ 840 (845)
+..+++.+.++.|++.|+++.++|+-....+....+.
T Consensus 64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~ 100 (154)
T TIGR01549 64 AYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRK 100 (154)
T ss_pred eeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHH
Confidence 4458999999999999999999999988888777665
No 204
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=40.84 E-value=2.4e+02 Score=35.17 Aligned_cols=195 Identities=18% Similarity=0.174 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeEE----------EEEecCCCceeeeEEeecCCcCCCCEEEEcCCC
Q 003131 402 AMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATAL----------LVVKDKVGKCIEEREIDALLIQSGDTLKVLPGT 471 (845)
Q Consensus 402 ~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~~----------v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~ 471 (845)
.++++...++.+.|.+++ |+.++++++....+...+ ..+.-++=..+....+..-+.+|-|.+.++ |.
T Consensus 96 ~iv~~~~~i~~~~e~~a~-ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~-g~ 173 (867)
T TIGR01524 96 LMVLASGLLGFIQESRAE-RAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVIS-AR 173 (867)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEe-cC
Confidence 344555668888888886 888899998776655444 111112211124577888888888988886 44
Q ss_pred ccCccEEEEeccee-eeccccC--Ccceee-----eccCCCceeccceeec----------ceEEEEEEEecCccHHHHH
Q 003131 472 KLPADGIVVWGTSY-VNESMVT--GEAVPV-----LKEINSPVIGGTINLH----------GVLHIQATKVGSDAVLSQI 533 (845)
Q Consensus 472 ~vPaDg~ll~G~~~-Vdes~LT--GEs~pv-----~k~~~~~v~aGt~~~~----------g~~~~~v~~~g~~t~~~~i 533 (845)
-+-+|=-.+.|++. |+-..-+ .+..|. .--.|..+..|....- |.+.-.+...-..|.+.+.
T Consensus 174 ~l~VDES~LTGES~PV~K~~~~~~~~~~~~~~~~n~vfaGT~v~~G~~~~~V~~tG~~T~~gki~~~v~~~~~~t~lq~~ 253 (867)
T TIGR01524 174 DLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATGSSTWFGSLAIAATERRGQTAFDKG 253 (867)
T ss_pred ceEEEcccccCCCCcccccCCccccccccccccccceecCCeEEEeEEEEEEEEEcCccHHHHHHHHhhCCCCCCcHHHH
Confidence 45556666677765 4322111 011111 1235777777763221 1111112221122322221
Q ss_pred HHHHHhhhccCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeeccccc
Q 003131 534 ISLVETAQMSKAPIQKFADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCAL 613 (845)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L 613 (845)
.+ .+.+.+..++..+.++++++..+...-|. ..+..++..+++....+.|.++
T Consensus 254 ~~----------~i~~~~~~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~~al~l~v~~iP~~Lp~~v 306 (867)
T TIGR01524 254 VK----------SVSKLLIRFMLVMVPVVLMINGLMKGDWL-----------------EAFLFALAVAVGLTPEMLPMIV 306 (867)
T ss_pred HH----------HHHHHHHHHHHHHHHHheehHHHhcCCHH-----------------HHHHHHHHHHHHhCcchHHHHH
Confidence 11 12333334444444444333322111121 1244556667777778888888
Q ss_pred chhhHHHHHHHH
Q 003131 614 GLATPTAVMVAT 625 (845)
Q Consensus 614 ~la~p~~~~~~~ 625 (845)
+++...+.....
T Consensus 307 t~~la~g~~~ma 318 (867)
T TIGR01524 307 SSNLAKGAINMS 318 (867)
T ss_pred HHHHHHHHHHHH
Confidence 888888764433
No 205
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=40.73 E-value=5.2e+02 Score=33.05 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=28.9
Q ss_pred hHHHHHHHHhhhheeecccccchhhHHHHHHHHHH
Q 003131 593 HFVFALMFSISVVVIACPCALGLATPTAVMVATGV 627 (845)
Q Consensus 593 ~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~ 627 (845)
.+..++..++++...+.|..+.+++..++..-.++
T Consensus 398 ~~l~~l~iiv~~vP~~LP~~~ti~l~~~~~rL~k~ 432 (1054)
T TIGR01657 398 IILRSLDIITIVVPPALPAELSIGINNSLARLKKK 432 (1054)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHC
Confidence 46667788888899999999999999988876655
No 206
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=39.83 E-value=50 Score=27.04 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=31.9
Q ss_pred hhhhHHHHhhhccCCCceEEEeecCCCeEEEEeCCCCCChhhHHHhhhhcC
Q 003131 214 ELDAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEALSSRSLVDGIAGRS 264 (845)
Q Consensus 214 ~~c~~~ie~~l~~~~gV~~~~v~~~~~~~~V~~d~~~~~~~~i~~~i~~~g 264 (845)
...|..++-.|+..++|..+=+|.-.....|-||+...+.+++++.++...
T Consensus 10 ~eeA~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~k 60 (88)
T PF11491_consen 10 PEEAMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFK 60 (88)
T ss_dssp TTTTHHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTT
T ss_pred HHHHHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcC
Confidence 456778888999999999999999999999999999999999999998876
No 207
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=39.32 E-value=58 Score=29.34 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=37.5
Q ss_pred CeEEEEEEeeCCCChhHHHHHHHHHhCCC-eE-EEEcCCCHHHHHHHHHHcCCC
Q 003131 793 DNLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 793 ~~~lG~~~~~D~lr~~~~~~I~~L~~~gi-~v-~mlTGD~~~tA~~iA~~~GI~ 844 (845)
-.++++-.......+.+++.++.|++.|. ++ +++=|-.+.--.+-.++.|++
T Consensus 51 ~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d 104 (122)
T cd02071 51 VDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVA 104 (122)
T ss_pred CCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCC
Confidence 35677777778899999999999999987 44 455555444335556688875
No 208
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=39.20 E-value=65 Score=32.68 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=22.9
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHH
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRT 833 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~t 833 (845)
|.-|++.+.++.|++.|++|+++||=....
T Consensus 120 paip~al~l~~~l~~~G~~Vf~lTGR~e~~ 149 (229)
T TIGR01675 120 PALPEGLKLYQKIIELGIKIFLLSGRWEEL 149 (229)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCChHH
Confidence 666788888888888888888888876544
No 209
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=39.07 E-value=50 Score=31.30 Aligned_cols=44 Identities=11% Similarity=-0.066 Sum_probs=37.9
Q ss_pred EeeCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 800 GIADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 800 ~~~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
...=.+||++.+.++.|++. +++.+.|.=....|..+.+.++..
T Consensus 54 ~~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~ 97 (156)
T TIGR02250 54 WYLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPD 97 (156)
T ss_pred EEEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcC
Confidence 34456899999999999965 999999999999999999988754
No 210
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=39.06 E-value=44 Score=34.90 Aligned_cols=50 Identities=18% Similarity=0.110 Sum_probs=40.8
Q ss_pred hhhhHHHHhhhccCCCceEEEeecCC-------------------CeEEEEeCCCCCChhhHHHhhhhc
Q 003131 214 ELDAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAGR 263 (845)
Q Consensus 214 ~~c~~~ie~~l~~~~gV~~~~v~~~~-------------------~~~~V~~d~~~~~~~~i~~~i~~~ 263 (845)
..|---+|..+..++||.++.+-.++ +.+.|+|||..++.++|++..-+.
T Consensus 134 gGCFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~~~ 202 (283)
T PRK05550 134 GGCFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFFEI 202 (283)
T ss_pred cCCchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHhh
Confidence 35777788899999999999877665 347899999999999999876543
No 211
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.97 E-value=1.5e+02 Score=24.61 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=40.2
Q ss_pred ChhhHHHHHHHHHccCeEEEEEEC----CeEEEEEEeeCCC-ChhHHHHHHHHHhCCCeEEEEcCCCHHHHHH
Q 003131 769 PDHVESFVVELEESARTGILVAYD----DNLIGVMGIADPV-KREAAVVVEGLLKMGVRPVMVTGDNWRTAHA 836 (845)
Q Consensus 769 ~~~~~~~~~~~~~~g~~~l~va~~----~~~lG~~~~~D~l-r~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~ 836 (845)
|-.+.+.++.+. +..+.-+.|+ ..--..+.++-+= ++...++++.|+++|+++..+| ||+.....
T Consensus 12 PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~-~~~~~~~~ 81 (85)
T cd04906 12 PGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKSAGYEVVDLS-DDELAKTH 81 (85)
T ss_pred CcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEECC-CCHHHHHH
Confidence 334555555555 2333334332 2344556677776 8899999999999999987655 44444333
No 212
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=38.95 E-value=54 Score=31.52 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=31.0
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEc-CCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVT-GDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlT-GD~~~tA~~iA~~~GI~ 844 (845)
.+-|+++++++.|++.|+++.+.| =|.+..|+.+=+.++|.
T Consensus 45 ~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 45 SLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp ---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C
T ss_pred EeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC
Confidence 356999999999999999999999 58899999999888876
No 213
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=38.69 E-value=3.3e+02 Score=34.72 Aligned_cols=119 Identities=16% Similarity=0.225 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCCCeeeEEeecCCC--eEEEEeCCCCCCH----HHHHHHHHhc------CC--ceeeec--cCCcceeEE
Q 003131 143 VNSVEGILRGLPGVKRAVVALATS--LGEVEYDPTVISK----DDIANAIEDA------GF--EASFVQ--SSGQDKILL 206 (845)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~~~~~--~~~v~~~~~~~~~----~~i~~~i~~~------G~--~~~~~~--~~~~~~~~~ 206 (845)
...+|+.+..++||++++-.-..+ .+.++|+.+. +. .++.+.+.+. |- .+...+ ..+..-..+
T Consensus 73 t~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g~-d~~~a~~ev~~~i~~~~~~LP~~~~~~p~~~~~~~~~~pv~~~ 151 (1040)
T PRK10503 73 TAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTL-PLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTL 151 (1040)
T ss_pred HHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHHhCCCccCCCCEEEEeCCCCCceEEE
Confidence 467899999999999988755444 4566676653 33 3455555432 11 111111 111223344
Q ss_pred EEecc--cch---hhh-HHHHhhhccCCCceEEEeecC-CCeEEEEeCCCC-----CChhhHHHhhhh
Q 003131 207 QVTGV--LCE---LDA-HFLEGILSNFKGVRQFRFDKI-SGELEVLFDPEA-----LSSRSLVDGIAG 262 (845)
Q Consensus 207 ~v~gm--~c~---~c~-~~ie~~l~~~~gV~~~~v~~~-~~~~~V~~d~~~-----~~~~~i~~~i~~ 262 (845)
.+.+- .-. .-+ ..++..|.+.+||.++.+... ...+.|..||.+ ++..++...+..
T Consensus 152 ~l~~~~~~~~~L~~~~~~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~~v~~ai~~ 219 (1040)
T PRK10503 152 AVTSTAMPMTQVEDMVETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAITG 219 (1040)
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
Confidence 55432 111 112 568999999999999988765 468899999874 777888888764
No 214
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=38.64 E-value=59 Score=29.02 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=27.0
Q ss_pred ChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcC
Q 003131 806 KREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVC 842 (845)
Q Consensus 806 r~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~G 842 (845)
-+++.++++.+|+.|++++.+|++.+ -...|.+-|
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~ 90 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHG 90 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcC
Confidence 47888999999999999999999875 233455444
No 215
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=37.89 E-value=2e+02 Score=22.54 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=37.8
Q ss_pred cccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 003131 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (845)
Q Consensus 132 ~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 196 (845)
+.+.|+.|+.-.-...+++ ++..= +.+.|..|.. .+.++|.+.+++.||+....
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~g---------~~l~v~~d~~-~s~~~i~~~~~~~G~~~~~~ 55 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEAG---------GEIEVLVDNE-VAKENVSRFAESRGYEVSVE 55 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCCC---------CEEEEEEcCh-hHHHHHHHHHHHcCCEEEEE
Confidence 4567999999999999998 54321 1233333332 45689999999999999643
No 216
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=37.77 E-value=61 Score=33.79 Aligned_cols=42 Identities=10% Similarity=-0.062 Sum_probs=27.2
Q ss_pred CCCChhHHHHHHHHHhCCCeEEEEcCCC---HHHHHHHHHHcCCC
Q 003131 803 DPVKREAAVVVEGLLKMGVRPVMVTGDN---WRTAHAVAREVCVI 844 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~v~mlTGD~---~~tA~~iA~~~GI~ 844 (845)
.++-|++.+.++.|++.|+++.++|+=. .+.+...-+..|++
T Consensus 117 a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~ 161 (266)
T TIGR01533 117 AKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFP 161 (266)
T ss_pred CCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcC
Confidence 3456788888888888888888888743 33333444556653
No 217
>PLN02811 hydrolase
Probab=37.62 E-value=41 Score=33.82 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=27.3
Q ss_pred CCCChhHHHHHHHHHhCCCeEEEEcCCCHHH
Q 003131 803 DPVKREAAVVVEGLLKMGVRPVMVTGDNWRT 833 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~t 833 (845)
-++.|++.++|+.|++.|+++.++||-+...
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~ 107 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRH 107 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhh
Confidence 4578999999999999999999999977653
No 218
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=37.32 E-value=55 Score=34.62 Aligned_cols=38 Identities=11% Similarity=0.309 Sum_probs=32.3
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHc
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREV 841 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~ 841 (845)
++.|++.+.++.|++.|+++.++|+-+......+-+..
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~ 181 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTL 181 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Confidence 57899999999999999999999998887776654443
No 219
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=37.01 E-value=2.8e+02 Score=35.43 Aligned_cols=119 Identities=13% Similarity=0.193 Sum_probs=74.4
Q ss_pred HHHHHHHhcCCCCeeeEEeec---CCCeEEEEeCCCCCCH----HHHHHHHHhc--CCcee-------eeccCCcceeEE
Q 003131 143 VNSVEGILRGLPGVKRAVVAL---ATSLGEVEYDPTVISK----DDIANAIEDA--GFEAS-------FVQSSGQDKILL 206 (845)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~~---~~~~~~v~~~~~~~~~----~~i~~~i~~~--G~~~~-------~~~~~~~~~~~~ 206 (845)
...+|+.+..++||+.+.-.. ....+.++++++. +. .++.+.+... .+... ........-..+
T Consensus 62 t~plE~~l~~v~gv~~i~S~s~~~g~s~i~v~f~~~~-d~~~a~~~v~~~l~~~~~~LP~~~~~~~~~~~~~~~~~~~~i 140 (1044)
T TIGR00915 62 TQVIEQQMNGIDGLRYMSSESDSDGSMTITLTFEQGT-DPDIAQVQVQNKLQLATPLLPQEVQRQGVRVEKASSNFLMVI 140 (1044)
T ss_pred HHHHHHHhcCCCCceEEEEEEcCCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHhhCCCcccCCCcEEeCCCCCceEEE
Confidence 356788899999999877543 2346667776653 32 3455555432 12111 111111112234
Q ss_pred EEecc----cchh----hhHHHHhhhccCCCceEEEeecCCCeEEEEeCCCC-----CChhhHHHhhhh
Q 003131 207 QVTGV----LCEL----DAHFLEGILSNFKGVRQFRFDKISGELEVLFDPEA-----LSSRSLVDGIAG 262 (845)
Q Consensus 207 ~v~gm----~c~~----c~~~ie~~l~~~~gV~~~~v~~~~~~~~V~~d~~~-----~~~~~i~~~i~~ 262 (845)
.+.+- +-.. -...++..|.+.+||.++++......+.|..||.+ ++..++.+.|+.
T Consensus 141 ~l~~~~~~~~~~~L~~~~~~~l~~~L~~v~GV~~V~~~G~~~ei~V~vD~~kl~~~gls~~dV~~~i~~ 209 (1044)
T TIGR00915 141 GLVSTDGSMTKEDLSDYIASNMVDPISRLEGVGDVQLFGSQYAMRIWLDPAKLNSYQLTPADVISAIQA 209 (1044)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEecCCceEEEEEECHHHHHHcCCCHHHHHHHHHH
Confidence 44332 2111 22568899999999999999888777999999874 788888888876
No 220
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=36.64 E-value=50 Score=37.95 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=40.1
Q ss_pred hhhHHHHHHHhcCCCCeeeEEeecCCC------------------eEEEEeCCCCCCHHHHHHHH
Q 003131 140 AACVNSVEGILRGLPGVKRAVVALATS------------------LGEVEYDPTVISKDDIANAI 186 (845)
Q Consensus 140 ~~C~~~ie~~l~~~~GV~~~~v~~~~~------------------~~~v~~~~~~~~~~~i~~~i 186 (845)
+.|-|-+|..+.+++||.++.+-++.+ .+.|.|||..++.++|++..
T Consensus 205 gGCFWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~gtgH~E~V~V~yDp~~is~~~Ll~~f 269 (521)
T PRK14018 205 GGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRHSGHAETVKVTYDADKLSLDTILQYY 269 (521)
T ss_pred cCCchhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCCCCcEEEEEEEECCCcCcHHHHHHHH
Confidence 468899999999999999988876655 37899999999999998865
No 221
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=36.45 E-value=28 Score=33.65 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.8
Q ss_pred CChhHHHHHHHHHhCCCeEEEEcCCC
Q 003131 805 VKREAAVVVEGLLKMGVRPVMVTGDN 830 (845)
Q Consensus 805 lr~~~~~~I~~L~~~gi~v~mlTGD~ 830 (845)
+.|++.++|++|+++|+++.++|.=+
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~ 52 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVTNQS 52 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 57899999999999999999999765
No 222
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=35.70 E-value=74 Score=26.80 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=35.8
Q ss_pred EEEEeeC---CCChhHHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHcCCC
Q 003131 797 GVMGIAD---PVKREAAVVVEGLLKMGVRPVMV-TGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 797 G~~~~~D---~lr~~~~~~I~~L~~~gi~v~ml-TGD~~~tA~~iA~~~GI~ 844 (845)
.++.+.+ ...+-+.+..+.|+++|+++.+- ++++......-|...|++
T Consensus 3 ~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p 54 (94)
T PF03129_consen 3 VIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIP 54 (94)
T ss_dssp EEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTES
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCe
Confidence 4556666 67788889999999999988776 666666677777777654
No 223
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=35.67 E-value=1e+03 Score=30.31 Aligned_cols=143 Identities=13% Similarity=0.186 Sum_probs=78.8
Q ss_pred EEEEEeCCCCchh----hHHHHHHhhhCCCCceEEEEEeeccE--EEEEECCCCCCH----HHHHHHHHhcC--cchhhh
Q 003131 47 RIQVGVTGMTCAA----CSNSVEGALMGLKGVAKASVALLQNK--ADVVFDPDLVKD----EDIKNAIEDAG--FEAEIL 114 (845)
Q Consensus 47 ~~~~~v~gm~C~~----C~~~ie~~l~~~~gv~~~~v~~~~~~--~~v~~~~~~~~~----~~i~~~i~~~G--y~~~~~ 114 (845)
.+...-+|.+-.. -...+|++++.++|+.+++..-..+. ..+.++.+. +. .++.+.+...- ......
T Consensus 55 ~V~t~~pGas~~~vE~~Vt~piE~~l~~v~gv~~i~S~S~~G~s~i~v~f~~g~-d~~~a~~ev~~~i~~~~~~LP~~~~ 133 (1040)
T PRK10503 55 QVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTL-PLDVAEQEVQAAINAATNLLPSDLP 133 (1040)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCccEEEEEecCCeEEEEEEEECCC-ChHHHHHHHHHHHHHHHHhCCCccC
Confidence 3445566766544 45678889999999999987544443 444554432 33 45555554421 110000
Q ss_pred cccCCCCCCCCceeeeccccCC--ccch---h-hHHHHHHHhcCCCCeeeEEeecC-CCeEEEEeCCCC-----CCHHHH
Q 003131 115 AESSTSGPKPQGTIVGQYTIGG--MTCA---A-CVNSVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----ISKDDI 182 (845)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~v~g--m~C~---~-C~~~ie~~l~~~~GV~~~~v~~~-~~~~~v~~~~~~-----~~~~~i 182 (845)
.................+.+.+ ..=. . -.+.++..|++++||.++.+.-. ...+.|.+|+.. +++.++
T Consensus 134 ~~p~~~~~~~~~~pv~~~~l~~~~~~~~~L~~~~~~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~~v 213 (1040)
T PRK10503 134 NPPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETV 213 (1040)
T ss_pred CCCEEEEeCCCCCceEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHHHH
Confidence 0000000000000112222222 1100 1 12578999999999999888744 467899999853 678899
Q ss_pred HHHHHhcC
Q 003131 183 ANAIEDAG 190 (845)
Q Consensus 183 ~~~i~~~G 190 (845)
.++|....
T Consensus 214 ~~ai~~~n 221 (1040)
T PRK10503 214 RTAITGAN 221 (1040)
T ss_pred HHHHHHhC
Confidence 99887643
No 224
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=35.01 E-value=1.9e+02 Score=24.19 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=10.0
Q ss_pred HHhhhHHHHHHHHH-ccCCCeEEE
Q 003131 417 LAKGKTSDAIKKLV-ELAPATALL 439 (845)
Q Consensus 417 ~~~~k~~~~l~~l~-~~~~~~~~v 439 (845)
+..+|..+..+++. ++.|-.-.+
T Consensus 22 rpqkK~~k~~~~m~~~L~~Gd~Vv 45 (84)
T TIGR00739 22 RPQRKRRKAHKKLIESLKKGDKVL 45 (84)
T ss_pred chHHHHHHHHHHHHHhCCCCCEEE
Confidence 33444444444443 344444333
No 225
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=34.98 E-value=64 Score=31.96 Aligned_cols=66 Identities=12% Similarity=0.023 Sum_probs=48.5
Q ss_pred HHHHccCeEEEEEE--------------CCeEEEEEEeeCCCChhHHHHHHHHHhCCCe--EEEEcCCCHHHHHHHHHHc
Q 003131 778 ELEESARTGILVAY--------------DDNLIGVMGIADPVKREAAVVVEGLLKMGVR--PVMVTGDNWRTAHAVAREV 841 (845)
Q Consensus 778 ~~~~~g~~~l~va~--------------~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~--v~mlTGD~~~tA~~iA~~~ 841 (845)
-+...|++++++.. +-.++|+-....+--+..++.|+.|++.|.+ +.++=|-...+ ...|+++
T Consensus 107 ~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~-~~~~~~~ 185 (197)
T TIGR02370 107 MLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVT-QDWADKI 185 (197)
T ss_pred HHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcC-HHHHHHh
Confidence 34566777776654 3468999999999999999999999999875 54444445544 4678888
Q ss_pred CCC
Q 003131 842 CVI 844 (845)
Q Consensus 842 GI~ 844 (845)
|-+
T Consensus 186 gad 188 (197)
T TIGR02370 186 GAD 188 (197)
T ss_pred CCc
Confidence 864
No 226
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.96 E-value=1.9e+02 Score=22.94 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=42.3
Q ss_pred EEECCCCCCHHHHHHHHHhcCcchhhhcccCCCCCCCCceeeeccccCCccchhhHHHHHHHhcCCCCeeeEEe
Q 003131 88 VVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVV 161 (845)
Q Consensus 88 v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v 161 (845)
+...+..-...++...+.+.|-......... ...+...+.+.++--.=......+-++|++++||.++.+
T Consensus 5 i~~~d~~g~l~~I~~~la~~~inI~~i~~~~----~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 5 LLLEHRPGVLSKVLNTIAQVRGNVLTINQNI----PIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEecCCCchHHHHHHHHHHcCCCEEEEEeCC----CCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 3333333456788888888887664443321 112233445555432223366888999999999998875
No 227
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=34.94 E-value=20 Score=34.97 Aligned_cols=13 Identities=62% Similarity=0.830 Sum_probs=12.1
Q ss_pred EEecCCCccccCC
Q 003131 650 VIFDKTGTLTQGR 662 (845)
Q Consensus 650 i~fDKTGTLT~~~ 662 (845)
+|||.+||||.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6999999999987
No 228
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=34.33 E-value=90 Score=25.57 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=28.6
Q ss_pred EEeeCCCChhHHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHcCC
Q 003131 799 MGIADPVKREAAVVVEGLLKMGVRPVMV-TGDNWRTAHAVAREVCV 843 (845)
Q Consensus 799 ~~~~D~lr~~~~~~I~~L~~~gi~v~ml-TGD~~~tA~~iA~~~GI 843 (845)
+.+.+..++.+.+..+.||++|+++.+. .+.+..-...-|+..|+
T Consensus 7 ~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~~~~a~~~~~ 52 (91)
T cd00859 7 VPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGA 52 (91)
T ss_pred EEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHcCC
Confidence 3445556667777777777777777653 33355566666666664
No 229
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=33.92 E-value=30 Score=31.00 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=24.9
Q ss_pred CCCChhHHHHHHHHHhCCCe---EEEEcCCCHHHHHHH------HHHcCC
Q 003131 803 DPVKREAAVVVEGLLKMGVR---PVMVTGDNWRTAHAV------AREVCV 843 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~---v~mlTGD~~~tA~~i------A~~~GI 843 (845)
..++.+.++-++.|++.|++ .+++-||++.+..++ |+++||
T Consensus 10 ~~i~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi 59 (117)
T PF00763_consen 10 KEIKEELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGI 59 (117)
T ss_dssp HHHHHHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCC
Confidence 45677788888888888776 356778887765544 566665
No 230
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=33.57 E-value=52 Score=35.89 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=22.8
Q ss_pred CCCChhHHHHHHHHHhCCCeEEEEcC
Q 003131 803 DPVKREAAVVVEGLLKMGVRPVMVTG 828 (845)
Q Consensus 803 D~lr~~~~~~I~~L~~~gi~v~mlTG 828 (845)
-++.|++.+++++|++.|+++.++|.
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTN 54 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTN 54 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEEC
Confidence 46788999999999999999999997
No 231
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=32.90 E-value=94 Score=26.44 Aligned_cols=68 Identities=19% Similarity=0.116 Sum_probs=45.4
Q ss_pred eeeccccCCccchhhHHHHHHHhcCCCCeeeEE-----eecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 003131 128 IVGQYTIGGMTCAACVNSVEGILRGLPGVKRAV-----VALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (845)
Q Consensus 128 ~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~-----v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 196 (845)
+++.+.+-..+-++ .-.+-+.|.+++||..+. ++..+..+.++.....++.++|.++|+++|-..+-.
T Consensus 5 rRlVLDVlKP~~p~-i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSI 77 (95)
T PF02680_consen 5 RRLVLDVLKPHEPS-IVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSI 77 (95)
T ss_dssp EEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEE
T ss_pred eEEEEEeecCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEee
Confidence 33444443333332 455677889999988765 456677777777777789999999999999887753
No 232
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.80 E-value=2.5e+02 Score=22.20 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=38.8
Q ss_pred CHHHHHHHHHhcCCceeeeccC----CcceeEEEEecccchhhhHHHHhhhccCCCceEEEe
Q 003131 178 SKDDIANAIEDAGFEASFVQSS----GQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRF 235 (845)
Q Consensus 178 ~~~~i~~~i~~~G~~~~~~~~~----~~~~~~~~v~gm~c~~c~~~ie~~l~~~~gV~~~~v 235 (845)
-..+|.+.|.+.|-.+...... ....+.+.++--.-...-..+.+.|.+++||.++.+
T Consensus 13 ~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 13 VLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred hHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 4678999999988877654321 123345555442233366888889999999998864
No 233
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=32.17 E-value=2.5e+02 Score=34.42 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhheeecccccchhhHHHHHHHHHH
Q 003131 594 FVFALMFSISVVVIACPCALGLATPTAVMVATGV 627 (845)
Q Consensus 594 ~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~ 627 (845)
+..++...++....+.|.++++++..+.....++
T Consensus 237 ~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~ 270 (755)
T TIGR01647 237 LQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKK 270 (755)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhC
Confidence 5566777888889999999999888887665544
No 234
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=31.62 E-value=69 Score=26.28 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCcee
Q 003131 143 VNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEAS 194 (845)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 194 (845)
+..++=.|.+.++|-.+-+|.=.+...|.+|+...+.+++.+.++..++++.
T Consensus 13 A~~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi 64 (88)
T PF11491_consen 13 AMVKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVI 64 (88)
T ss_dssp THHHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS
T ss_pred HHHHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhhe
Confidence 4556667888899999999999999999999999999999999999887764
No 235
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=31.53 E-value=8.2e+02 Score=31.30 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=14.3
Q ss_pred cCCCccccCCeEEEEEEeccC
Q 003131 653 DKTGTLTQGRATVTTAKVFTK 673 (845)
Q Consensus 653 DKTGTLT~~~~~v~~~~~~~~ 673 (845)
|.+||.++=.+..+.+...++
T Consensus 946 ~~~GtV~~I~lRsT~Irt~Dg 966 (1109)
T PRK10929 946 DLTGSVTKINTRATTISDWDR 966 (1109)
T ss_pred CEEEEEEEEeeeEEEEEeCCC
Confidence 578888877776666655543
No 236
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=31.29 E-value=1.5e+02 Score=25.25 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=43.0
Q ss_pred eeEEEEecccchhhhHHHHhhhccCCCceEEEe-----ecCCCeEEEEeCCCCCChhhHHHhhhhcCCCc
Q 003131 203 KILLQVTGVLCELDAHFLEGILSNFKGVRQFRF-----DKISGELEVLFDPEALSSRSLVDGIAGRSNGK 267 (845)
Q Consensus 203 ~~~~~v~gm~c~~c~~~ie~~l~~~~gV~~~~v-----~~~~~~~~V~~d~~~~~~~~i~~~i~~~g~~~ 267 (845)
|+.+.+-.. ...-.-.+-+.|.+++||..+++ +..+..++|+-....++.+++.+.|++.|...
T Consensus 6 RlVLDVlKP-~~p~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~I 74 (95)
T PF02680_consen 6 RLVLDVLKP-HEPSIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVI 74 (95)
T ss_dssp EEEEEEEEE-SSS-HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EE
T ss_pred EEEEEeecC-CCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeE
Confidence 444444333 22333456677888999987764 45678888888888899999999999988443
No 237
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=30.72 E-value=1.9e+02 Score=26.67 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=46.5
Q ss_pred HHHHccCeEEEEEE--------------CCeEEEEEEeeCCCChhHHHHHHHHHhCCC-eE-EEEcCCC------HHHHH
Q 003131 778 ELEESARTGILVAY--------------DDNLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDN------WRTAH 835 (845)
Q Consensus 778 ~~~~~g~~~l~va~--------------~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi-~v-~mlTGD~------~~tA~ 835 (845)
-+...|+.++++.. +-.++|+-.+.-.-.+.+++.++.|++.|. ++ +++-|-- +.-..
T Consensus 26 ~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~ 105 (137)
T PRK02261 26 ALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVE 105 (137)
T ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHH
Confidence 44567777777654 346888888888999999999999999966 33 4555532 23344
Q ss_pred HHHHHcCCC
Q 003131 836 AVAREVCVI 844 (845)
Q Consensus 836 ~iA~~~GI~ 844 (845)
.-++++|.+
T Consensus 106 ~~l~~~G~~ 114 (137)
T PRK02261 106 KKFKEMGFD 114 (137)
T ss_pred HHHHHcCCC
Confidence 567777753
No 238
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=30.65 E-value=77 Score=32.00 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=38.7
Q ss_pred eCCCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 802 ADPVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 802 ~D~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
..++.|++.+.++.|++.|+.+.+.|+=....+..+.+.+|+.
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~ 126 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLL 126 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccCh
Confidence 3588999999999999999999999999988999998888875
No 239
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=30.40 E-value=2.7e+02 Score=21.96 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=39.9
Q ss_pred cccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 003131 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (845)
Q Consensus 132 ~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 196 (845)
+...|..|+.=.-...+++++++- .+.+.|..|.. .+.++|.+.+++.||+....
T Consensus 2 lD~~G~~CP~P~i~~k~~l~~l~~---------G~~l~V~~dd~-~s~~di~~~~~~~g~~~~~~ 56 (69)
T cd03423 2 LDTRGLRCPEPVMMLHKKVRKMKP---------GDTLLVLATDP-STTRDIPKFCTFLGHELLAQ 56 (69)
T ss_pred ccccCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCC-chHHHHHHHHHHcCCEEEEE
Confidence 345689999988889999988742 12344444433 46889999999999998653
No 240
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=30.26 E-value=1.2e+02 Score=37.52 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHccCeEEEEEECCeEEEEEEeeC-----------CCChhHHHHHHHHHhC-CCeEEEEcCCCHHHHHHHH
Q 003131 771 HVESFVVELEESARTGILVAYDDNLIGVMGIAD-----------PVKREAAVVVEGLLKM-GVRPVMVTGDNWRTAHAVA 838 (845)
Q Consensus 771 ~~~~~~~~~~~~g~~~l~va~~~~~lG~~~~~D-----------~lr~~~~~~I~~L~~~-gi~v~mlTGD~~~tA~~iA 838 (845)
+.......+.....+.+.+-||+++..+..--+ .+-++..++++.|.+. +-.|+++||-........-
T Consensus 578 ~~~~~~~~y~~a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~f 657 (934)
T PLN03064 578 PPEDAIQRYLQSNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENF 657 (934)
T ss_pred CHHHHHHHHHhccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHh
Confidence 345667778888889999999999987643322 1347888999999887 6789999999999887766
Q ss_pred HHcC
Q 003131 839 REVC 842 (845)
Q Consensus 839 ~~~G 842 (845)
..++
T Consensus 658 g~~~ 661 (934)
T PLN03064 658 GEFD 661 (934)
T ss_pred CCCC
Confidence 5443
No 241
>COG4420 Predicted membrane protein [Function unknown]
Probab=29.92 E-value=2.8e+02 Score=26.98 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=25.8
Q ss_pred ccCChhhHHHHHHhhhHHHH-HHHHHHHHHHHHHHHhhcCCCCCCcCC
Q 003131 542 MSKAPIQKFADFVASIFVPI-VVTLALFTWLCWYVAGVLGAYPEQWLP 588 (845)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~~~~~ 588 (845)
...+-..+.+|+++.++... +++..++.+++|++.-........|.+
T Consensus 39 ~~~t~gdR~ad~ia~f~Gsw~fil~~~~~ll~Wi~lNl~~~~~~~wDp 86 (191)
T COG4420 39 DGETFGDRVADKIARFGGSWAFILTFTLLLLLWIVLNLFLVPGLAWDP 86 (191)
T ss_pred cccchhhhHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhhhcCCcCCC
Confidence 34555668888888877543 334444455567664333223344544
No 242
>PRK11018 hypothetical protein; Provisional
Probab=29.77 E-value=2.1e+02 Score=23.37 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=42.4
Q ss_pred EEEEeCCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEECCCCCCHHHHHHHHHhcCcchh
Q 003131 48 IQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (845)
Q Consensus 48 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (845)
..+.+.|..|+...-..++++.+++. .+...+..|+. .....+...++..||.+.
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~-~a~~di~~~~~~~G~~v~ 63 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCP-QSINNIPLDARNHGYTVL 63 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCc-cHHHHHHHHHHHcCCEEE
Confidence 46889999999999999999998753 33445555543 456788889999999874
No 243
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=29.76 E-value=73 Score=31.38 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=27.6
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHH
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAH 835 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~ 835 (845)
++.|++.++++.|++.|+++.++|.=+.....
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~ 115 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTT 115 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHH
Confidence 47899999999999999999999987665543
No 244
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=29.50 E-value=7.8e+02 Score=28.25 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=78.7
Q ss_pred eeEEeecCCcCCCCEEEEcCCCccCccEEEEeccee-eeccccCCcceeeeccCCCceeccceeecceE---------EE
Q 003131 450 EEREIDALLIQSGDTLKVLPGTKLPADGIVVWGTSY-VNESMVTGEAVPVLKEINSPVIGGTINLHGVL---------HI 519 (845)
Q Consensus 450 ~~~~i~~~~l~~GDii~v~~G~~vPaDg~ll~G~~~-Vdes~LTGEs~pv~k~~~~~v~aGt~~~~g~~---------~~ 519 (845)
....+...+..|-|.+.++. ..-+|--.+.|++. +.-. .|+. ...|..++.|+....=.. .+
T Consensus 56 Div~v~~G~~iP~Dg~vl~g--~~~vdes~LTGEs~pv~k~--~g~~----v~~gs~~~~G~~~~~v~~~~~~s~~~~i~ 127 (499)
T TIGR01494 56 DIVLVKSGEIVPADGVLLSG--SCFVDESNLTGESVPVLKT--AGDA----VFAGTYVFNGTLIVVVSATGPNTFGGKIA 127 (499)
T ss_pred CEEEECCCCEeeeeEEEEEc--cEEEEcccccCCCCCeeec--cCCc----cccCcEEeccEEEEEEEEeccccHHHHHH
Confidence 45778888889999998865 44555556667765 3322 1442 246777888876542111 11
Q ss_pred EEEEecCccHHHHHHHHHHhhhcc-CChhhHHH-HHHhhhHHHHHHHHHHHHHHHHHHHh--hcCCCCCCcCCCCCchHH
Q 003131 520 QATKVGSDAVLSQIISLVETAQMS-KAPIQKFA-DFVASIFVPIVVTLALFTWLCWYVAG--VLGAYPEQWLPENGTHFV 595 (845)
Q Consensus 520 ~v~~~g~~t~~~~i~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~a~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~ 595 (845)
.+.++|.++ +.. .....+.. ..+..+.+.+.++..++ +..+.... . ...+.
T Consensus 128 ~~v~~~~~~------------k~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~~~~~~~------------~~~~~ 182 (499)
T TIGR01494 128 VVVYTGFET------------KTPLQPKLDRLSDIIFILFVLLIALAVFLF-WAIGLWDPNSI------------FKIFL 182 (499)
T ss_pred HHHHhcCCC------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcccccH------------HHHHH
Confidence 223344433 111 12233333 34444333333333332 22222110 0 02456
Q ss_pred HHHHHHhhhheeecccccchhhHHHHHHHHH
Q 003131 596 FALMFSISVVVIACPCALGLATPTAVMVATG 626 (845)
Q Consensus 596 ~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~ 626 (845)
.++...+.....+.|.+++++.-.+.....+
T Consensus 183 ~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~ 213 (499)
T TIGR01494 183 RALILLVIAIPIALPLAVTIALAVGDARLAK 213 (499)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 6777788888999999999998888776654
No 245
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=29.47 E-value=25 Score=29.13 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=15.7
Q ss_pred eecCCcCCCCEEEE-cCCCccCc
Q 003131 454 IDALLIQSGDTLKV-LPGTKLPA 475 (845)
Q Consensus 454 i~~~~l~~GDii~v-~~G~~vPa 475 (845)
+.-.+|.+||.|.| ++||.||-
T Consensus 45 i~~~~i~~Gd~V~V~raGdVIP~ 67 (82)
T PF03120_consen 45 IKELDIRIGDTVLVTRAGDVIPK 67 (82)
T ss_dssp HHHTT-BBT-EEEEEEETTTEEE
T ss_pred HHHcCCCCCCEEEEEECCCccce
Confidence 34467999999988 56999995
No 246
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=29.35 E-value=4.9e+02 Score=32.64 Aligned_cols=209 Identities=15% Similarity=0.121 Sum_probs=112.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeE----EEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCcc
Q 003131 398 FETSAMLITFVLFGKYLEILAKGKTSDAIKKLVELAPATA----LLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKL 473 (845)
Q Consensus 398 ~~~~~~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~----~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~v 473 (845)
+...+++++..++| +.+.+...++.++++++.+.....- ++.+.-++=..+....+...|.+|-|...|+.-+ .
T Consensus 107 ~~I~~~i~~n~~~g-~~qe~~a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~-l 184 (917)
T COG0474 107 IVILLVVVINALLG-FVQEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSD-L 184 (917)
T ss_pred eeehHHHHHHHHHH-HHHHHHHHHHHHHHHhhccCceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEecC-c
Confidence 33455555555666 5566666688888888776554322 2221111101114578889999999999999877 5
Q ss_pred CccEEEEeccee-eecc--ccCCcceeee---c---cCCCceeccceeecceEEEEEEEecCccHHHHHHHHHHhhhccC
Q 003131 474 PADGIVVWGTSY-VNES--MVTGEAVPVL---K---EINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQMSK 544 (845)
Q Consensus 474 PaDg~ll~G~~~-Vdes--~LTGEs~pv~---k---~~~~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~~~~ 544 (845)
=+|=-.|.|++. |+-. ..+.|..|.. + -.|..|..|+-..-=...+.-|..|..+..-.-.+ .....-.
T Consensus 185 ~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~l~sGt~V~~G~~~giVvaTG~~T~~G~ia~~~~~~~--~~~t~l~ 262 (917)
T COG0474 185 EVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKK--EVKTPLQ 262 (917)
T ss_pred eEEcccccCCCcchhccccccccccccccCCccceEEeCCEEEcceEEEEEEEEcCccHHHHHHHhhcccc--ccCCcHH
Confidence 566666667765 3221 1222333333 2 34777777763221112222233333222211110 0111111
Q ss_pred ChhhHHHHHHhhhHHHHHHHHHHHHHHH----HHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHH
Q 003131 545 APIQKFADFVASIFVPIVVTLALFTWLC----WYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTA 620 (845)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~a~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~ 620 (845)
..+.+....+..+.+.+.++..+..+.. |. ..+..++..+++++..+.|..+.++..++
T Consensus 263 ~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~~v~l~va~IPegLp~~vti~la~g 325 (917)
T COG0474 263 RKLNKLGKFLLVLALVLGALVFVVGLFRGGNGLL-----------------ESFLTALALAVAAVPEGLPAVVTIALALG 325 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHH-----------------HHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1344555555544444444444433332 22 24667788889999999999999888887
Q ss_pred HHHHHHH
Q 003131 621 VMVATGV 627 (845)
Q Consensus 621 ~~~~~~~ 627 (845)
...-.++
T Consensus 326 ~~~mak~ 332 (917)
T COG0474 326 AQRMAKD 332 (917)
T ss_pred HHHHHhc
Confidence 6655444
No 247
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=29.24 E-value=3.9e+02 Score=26.30 Aligned_cols=11 Identities=36% Similarity=0.700 Sum_probs=5.5
Q ss_pred CcCCCCEEEEc
Q 003131 458 LIQSGDTLKVL 468 (845)
Q Consensus 458 ~l~~GDii~v~ 468 (845)
++++||+|.+.
T Consensus 181 d~~~G~vVKl~ 191 (206)
T PF09874_consen 181 DVEEGDVVKLL 191 (206)
T ss_pred CCCCCceEEEE
Confidence 45555555443
No 248
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=28.86 E-value=2.3e+02 Score=26.04 Aligned_cols=52 Identities=12% Similarity=0.064 Sum_probs=34.2
Q ss_pred CeEEEEEEeeCCCChhHHHHHHHHHhCCCe--EEEEcCCC------HHHHHHHHHHcCCC
Q 003131 793 DNLIGVMGIADPVKREAAVVVEGLLKMGVR--PVMVTGDN------WRTAHAVAREVCVI 844 (845)
Q Consensus 793 ~~~lG~~~~~D~lr~~~~~~I~~L~~~gi~--v~mlTGD~------~~tA~~iA~~~GI~ 844 (845)
-.++|+-.+-=.--+..+++++.|+++|++ .+|+=|-- ...-..-++++|++
T Consensus 53 adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~ 112 (134)
T TIGR01501 53 ADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFD 112 (134)
T ss_pred CCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCC
Confidence 356676666666777899999999999873 45566631 11123456778764
No 249
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=28.75 E-value=3e+02 Score=21.82 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=40.3
Q ss_pred cccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 003131 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (845)
Q Consensus 132 ~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 196 (845)
+...|..|+.=.-+..++|++++.= ..+.|..|.. .+.++|.+.++..||++...
T Consensus 2 lD~rG~~CP~Pvi~~kkal~~l~~G---------~~l~V~~d~~-~s~~ni~~~~~~~g~~v~~~ 56 (69)
T cd03422 2 LDLRGEPCPYPAIATLEALPSLKPG---------EILEVISDCP-QSINNIPIDARNHGYKVLAI 56 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCCC---------CEEEEEecCc-hHHHHHHHHHHHcCCEEEEE
Confidence 4567899999999999999887532 2334444433 56889999999999998643
No 250
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=28.62 E-value=1.2e+02 Score=32.60 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=41.9
Q ss_pred ECCeEEEEEEeeCCCChh---HHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHcCC
Q 003131 791 YDDNLIGVMGIADPVKRE---AAVVVEGLLKMGVRPVMV-TGDNWRTAHAVAREVCV 843 (845)
Q Consensus 791 ~~~~~lG~~~~~D~lr~~---~~~~I~~L~~~gi~v~ml-TGD~~~tA~~iA~~~GI 843 (845)
|+.+.+|.+.+...-.|. ..++++.+++.++++++. ..-+..++..+|+++|.
T Consensus 220 ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~la~e~g~ 276 (311)
T PRK09545 220 YGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVIESVAKGTSV 276 (311)
T ss_pred CCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCChHHHHHHHHhcCC
Confidence 467778887776555554 455899999999998765 77788999999999986
No 251
>PLN02151 trehalose-phosphatase
Probab=28.15 E-value=1e+02 Score=33.59 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=44.6
Q ss_pred HccCeEEEEEECCeEEEEEEeeCC--CChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH
Q 003131 781 ESARTGILVAYDDNLIGVMGIADP--VKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR 839 (845)
Q Consensus 781 ~~g~~~l~va~~~~~lG~~~~~D~--lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~ 839 (845)
+...+.+++-||++++-+..--|. +-++.+++|+.|.+ +..+.++||=+......+..
T Consensus 95 ~~~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 95 EGKQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred cCCceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHcC
Confidence 334567888999999865543333 56889999999994 57999999999988877654
No 252
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=28.05 E-value=2.7e+02 Score=23.42 Aligned_cols=42 Identities=17% Similarity=0.282 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHH
Q 003131 143 VNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAI 186 (845)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i 186 (845)
...+.+.|..++|++-...+...+++.|+.... +.+++.+.+
T Consensus 19 ~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~--~~~~~~~~i 60 (87)
T PRK10553 19 ISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAE--DSETLLQTI 60 (87)
T ss_pred HHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeC--ChHHHHHHH
Confidence 455666666666665444444555666665443 234444433
No 253
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.77 E-value=1.2e+02 Score=32.04 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=40.7
Q ss_pred CCeEEEEEEeeCCCChh---HHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHcCC
Q 003131 792 DDNLIGVMGIADPVKRE---AAVVVEGLLKMGVRPVMV-TGDNWRTAHAVAREVCV 843 (845)
Q Consensus 792 ~~~~lG~~~~~D~lr~~---~~~~I~~L~~~gi~v~ml-TGD~~~tA~~iA~~~GI 843 (845)
+++.++.+.+...-.+. ..++++.+++.+++++.. +.-+..++..||++.|+
T Consensus 197 gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~ 252 (286)
T cd01019 197 GLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTGA 252 (286)
T ss_pred CCceeeeecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcCc
Confidence 56777777775544444 447889999999998766 77789999999999986
No 254
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=26.54 E-value=1.7e+02 Score=23.17 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=40.7
Q ss_pred EEeCCCCchhhHHHHHHhhhCCCCceEEEEEeeccEEEEEECCCCCCHHHHHHHHHhcCcchh
Q 003131 50 VGVTGMTCAACSNSVEGALMGLKGVAKASVALLQNKADVVFDPDLVKDEDIKNAIEDAGFEAE 112 (845)
Q Consensus 50 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~ 112 (845)
+.+.|+.|+.-.-...+++.+++. .+...+..++. ...+.+....+..||...
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~-~a~~di~~~~~~~G~~~~ 54 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDP-GFARDAQAWCKSTGNTLI 54 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCc-cHHHHHHHHHHHcCCEEE
Confidence 457899999999999999998753 33455555543 567889999999999875
No 255
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=26.38 E-value=44 Score=25.14 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=9.9
Q ss_pred CCCCEEEEcCC
Q 003131 460 QSGDTLKVLPG 470 (845)
Q Consensus 460 ~~GDii~v~~G 470 (845)
++||+|.++.|
T Consensus 2 ~~GDvV~LKSG 12 (53)
T PF09926_consen 2 KIGDVVQLKSG 12 (53)
T ss_pred CCCCEEEEccC
Confidence 58999999997
No 256
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=26.34 E-value=8.7e+02 Score=26.43 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=67.0
Q ss_pred EEEEEeCCCCchhhHHHHHHhhhCCCCceEEEEEeec------cEEEEEECCCCCCHHHHHHHHHhc-Ccchh--hhccc
Q 003131 47 RIQVGVTGMTCAACSNSVEGALMGLKGVAKASVALLQ------NKADVVFDPDLVKDEDIKNAIEDA-GFEAE--ILAES 117 (845)
Q Consensus 47 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~-Gy~~~--~~~~~ 117 (845)
..++.|.++.-..-...+++.++....|.++.+-... .-+.|+|. +.++...+++.. |.... .+.-.
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~----~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFG----SEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEc----cHHHHHHHHHHcCCCccCCceeeee
Confidence 3468899998888899999999998889888774321 34778773 345556666543 32221 00000
Q ss_pred CCCCCCCCceeeeccccCCccchhhHHHHHHHhcCCCCeeeEEeecCC------CeEEEEeC
Q 003131 118 STSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVVALAT------SLGEVEYD 173 (845)
Q Consensus 118 ~~~~~~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~ 173 (845)
... +.........+.|.++.=......+++.+.+.-.|..+.+-... +.+.|+|+
T Consensus 183 ~a~-p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~ 243 (346)
T TIGR01659 183 YAR-PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFN 243 (346)
T ss_pred ccc-ccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEEC
Confidence 000 00011122345555555444555666666666556555543322 24566664
No 257
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.09 E-value=1.4e+02 Score=25.10 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHhcCCceeeeccCCcceeEEEEecccchhhhHHHHhhhccCCCceEEEeecCCCeEEEEe
Q 003131 177 ISKDDIANAIEDAGFEASFVQSSGQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFDKISGELEVLF 246 (845)
Q Consensus 177 ~~~~~i~~~i~~~G~~~~~~~~~~~~~~~~~v~gm~c~~c~~~ie~~l~~~~gV~~~~v~~~~~~~~V~~ 246 (845)
-+++.|.+.++.+||.++.-- . ..+.+.+|++.+.+++.++.+.|.-
T Consensus 12 ~~~dri~~~l~e~g~~v~~eG----D-------------------~ivas~pgis~ieik~E~kkL~v~t 58 (96)
T COG4004 12 PDPDRIMRGLSELGWTVSEEG----D-------------------RIVASSPGISRIEIKPENKKLLVNT 58 (96)
T ss_pred CCHHHHHHHHHHhCeeEeecc----c-------------------EEEEecCCceEEEEecccceEEEec
Confidence 368899999999999886411 1 1235678999999999999999885
No 258
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=26.00 E-value=2.4e+02 Score=25.75 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=36.5
Q ss_pred CCeEEEEEEeeCCCChhHHHHHHHHHhCCC-eEEEEcCCCH-------HHHHHHHHHcCCC
Q 003131 792 DDNLIGVMGIADPVKREAAVVVEGLLKMGV-RPVMVTGDNW-------RTAHAVAREVCVI 844 (845)
Q Consensus 792 ~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi-~v~mlTGD~~-------~tA~~iA~~~GI~ 844 (845)
+-.++|+-++.=.--+..+++++.|+++|+ .+.++=|-+. ..-+.-.+++|++
T Consensus 50 ~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 50 DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCC
Confidence 346788888887888899999999999998 5544444432 2233556677764
No 259
>PHA02669 hypothetical protein; Provisional
Probab=25.83 E-value=1.7e+02 Score=27.32 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHH
Q 003131 400 TSAMLITFVLFGKYLEILAK-GKTSDAIKKLV 430 (845)
Q Consensus 400 ~~~~i~~~~~~~~~l~~~~~-~k~~~~l~~l~ 430 (845)
+++.+-+++=+|-..|...+ .|..+.+++|.
T Consensus 17 TgAaiYlLiEiGLAaERanKrsRvK~nMRkLa 48 (210)
T PHA02669 17 TGAAIYLLIEIGLAAERANKRSRVKANMRKLA 48 (210)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34455555556666665433 34555666664
No 260
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=25.60 E-value=2.6e+02 Score=26.86 Aligned_cols=56 Identities=18% Similarity=0.336 Sum_probs=38.1
Q ss_pred EEEEECCeEEEEEEeeCCCCh---------------h----------HHHHHHHHHhCCCeEEEEcCC--CHHHHHHHHH
Q 003131 787 ILVAYDDNLIGVMGIADPVKR---------------E----------AAVVVEGLLKMGVRPVMVTGD--NWRTAHAVAR 839 (845)
Q Consensus 787 l~va~~~~~lG~~~~~D~lr~---------------~----------~~~~I~~L~~~gi~v~mlTGD--~~~tA~~iA~ 839 (845)
+++-.|++++|++.++-.+-. . .+-+++++|+.||+-+|+|=| |....+-|=.
T Consensus 72 ~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI~~ 151 (174)
T COG3981 72 WAVDEDGQIVGFINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVIEA 151 (174)
T ss_pred EEEecCCcEEEEEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHHHh
Confidence 344447899999999865532 2 345788999999999999865 4444444443
Q ss_pred HcC
Q 003131 840 EVC 842 (845)
Q Consensus 840 ~~G 842 (845)
.-|
T Consensus 152 NGG 154 (174)
T COG3981 152 NGG 154 (174)
T ss_pred cCC
Confidence 333
No 261
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=25.57 E-value=1.5e+03 Score=28.95 Aligned_cols=47 Identities=28% Similarity=0.278 Sum_probs=36.6
Q ss_pred HHHHHhcCCCCeeeEEeecC-CCeEEEEeCCCC-----CCHHHHHHHHHhcCC
Q 003131 145 SVEGILRGLPGVKRAVVALA-TSLGEVEYDPTV-----ISKDDIANAIEDAGF 191 (845)
Q Consensus 145 ~ie~~l~~~~GV~~~~v~~~-~~~~~v~~~~~~-----~~~~~i~~~i~~~G~ 191 (845)
.++..|++++||.++.+.-. ...+.|..|+.. ++..++.+.|.....
T Consensus 170 ~l~~~L~~i~GV~~V~~~G~~~~ei~V~iD~~kl~~~glt~~dV~~~l~~~~~ 222 (1051)
T TIGR00914 170 IIRPQLRTVPGVAEVNSIGGYVKQFLVAPDPEKLAAYGLSLADVVNALERNNQ 222 (1051)
T ss_pred HHHHHHhcCCCceEeeecCCceEEEEEEECHHHHHHcCCCHHHHHHHHHHhCc
Confidence 47789999999999998643 356788888853 678899999987643
No 262
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=25.35 E-value=1.4e+02 Score=24.84 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=17.2
Q ss_pred CChhHHHHHHHHHhCCCeEEE-EcCCCHHHHHHHHHHcC
Q 003131 805 VKREAAVVVEGLLKMGVRPVM-VTGDNWRTAHAVAREVC 842 (845)
Q Consensus 805 lr~~~~~~I~~L~~~gi~v~m-lTGD~~~tA~~iA~~~G 842 (845)
.++.+.+..+.||+.|+++.+ .++.+..-...-|.+.|
T Consensus 16 ~~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g 54 (94)
T cd00738 16 AREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRG 54 (94)
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCC
Confidence 344444445555555555544 23344444444444444
No 263
>PLN02580 trehalose-phosphatase
Probab=25.06 E-value=1.6e+02 Score=32.45 Aligned_cols=63 Identities=11% Similarity=0.277 Sum_probs=47.1
Q ss_pred HHHHHHccCeEEEEEECCeEEEEEEeeC--CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHH
Q 003131 776 VVELEESARTGILVAYDDNLIGVMGIAD--PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAR 839 (845)
Q Consensus 776 ~~~~~~~g~~~l~va~~~~~lG~~~~~D--~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~ 839 (845)
+..+.+...+.+++-|||++.-+..--| .+-++.++++++|.+. ..|.+|||=......+.-.
T Consensus 111 ~~~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~ 175 (384)
T PLN02580 111 IANFAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVG 175 (384)
T ss_pred HHHHhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhC
Confidence 3455666677899999999986552111 1357899999999987 4899999999988776654
No 264
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=24.79 E-value=1.5e+02 Score=28.64 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=35.9
Q ss_pred hHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCC--CCCHHHHHHHHH
Q 003131 142 CVNSVEGILRGLPGVKRAVVALATSLGEVEYDPT--VISKDDIANAIE 187 (845)
Q Consensus 142 C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~--~~~~~~i~~~i~ 187 (845)
=+..|.+.+.+++||.++.+-...+.+.|-++.. ....++|.+.++
T Consensus 76 ~a~~i~~~v~~~~~V~~A~vvv~~~~a~Vav~~~~~~~~~~~i~~~V~ 123 (177)
T PF09580_consen 76 LADRIANRVKKVPGVEDATVVVTDDNAYVAVDLDFNRFNTKKIKKKVE 123 (177)
T ss_pred HHHHHHHHHhcCCCceEEEEEEECCEEEEEEEecccccchhHHHHHHH
Confidence 4788999999999999999999999999998776 334444444443
No 265
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=24.70 E-value=3.5e+02 Score=23.35 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=12.7
Q ss_pred HHHHHHHhhhHHHHHHHHHccCCCeEEEE
Q 003131 412 KYLEILAKGKTSDAIKKLVELAPATALLV 440 (845)
Q Consensus 412 ~~l~~~~~~k~~~~l~~l~~~~~~~~~v~ 440 (845)
.++-.+-++|..+.-+++.+...+--.|+
T Consensus 23 yFli~RPQrKr~K~~~~ml~sL~kGD~Vv 51 (97)
T COG1862 23 YFLIIRPQRKRMKEHQELLNSLKKGDEVV 51 (97)
T ss_pred HHhhcCHHHHHHHHHHHHHHhccCCCEEE
Confidence 33344444455555555444333333333
No 266
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=24.51 E-value=1.1e+03 Score=26.92 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=16.1
Q ss_pred HHHHHccCCCeEEEEEecCCCc
Q 003131 426 IKKLVELAPATALLVVKDKVGK 447 (845)
Q Consensus 426 l~~l~~~~~~~~~v~~~~r~g~ 447 (845)
+-++..++|.....++|..||.
T Consensus 221 LLElR~lqp~f~vkVVRSpDGe 242 (505)
T PF06638_consen 221 LLELRHLQPQFYVKVVRSPDGE 242 (505)
T ss_pred HHHHHhcCceEEEEEEECCCCc
Confidence 4556778999777677777883
No 267
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=24.32 E-value=6.6e+02 Score=25.90 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=26.5
Q ss_pred hHHHHhhhccCCCceEEEeecC-------------CCeEEEEeCCC
Q 003131 217 AHFLEGILSNFKGVRQFRFDKI-------------SGELEVLFDPE 249 (845)
Q Consensus 217 ~~~ie~~l~~~~gV~~~~v~~~-------------~~~~~V~~d~~ 249 (845)
.+.+++.+..++||.+++|+.. +.++.++|.|.
T Consensus 109 egELarTI~~idgV~~ArVhL~lP~~~~~~~~~~asASV~I~~~~~ 154 (249)
T PRK15348 109 EQRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQ 154 (249)
T ss_pred HHHHHHHHHhCCCeeEeEEEEECCCCCcccCCCCccEEEEEEeCCC
Confidence 4678999999999999998764 35667888876
No 268
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=24.03 E-value=3.6e+02 Score=22.78 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=36.7
Q ss_pred EEEeCCCCCCHHHHHHHHHhc---CCceeeeccC----CcceeEEEEecccchhhhHHHHhhhccCCCceEEEee
Q 003131 169 EVEYDPTVISKDDIANAIEDA---GFEASFVQSS----GQDKILLQVTGVLCELDAHFLEGILSNFKGVRQFRFD 236 (845)
Q Consensus 169 ~v~~~~~~~~~~~i~~~i~~~---G~~~~~~~~~----~~~~~~~~v~gm~c~~c~~~ie~~l~~~~gV~~~~v~ 236 (845)
.|......++.+++.+.|++. ||...-.... .....++.+.--...--...+|+.+++.+||.++.+-
T Consensus 9 kV~P~s~evDle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~g~td~lee~i~~ve~V~svev~ 83 (88)
T TIGR00489 9 KVMPESPDVDLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAEGGTEAAEESLSGIEGVESVEVT 83 (88)
T ss_pred EECCCCCccCHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCCcChHHHHHHHhcCCCccEEEEE
Confidence 344444557888898888753 4443321111 0111111111111112348899999999999988753
No 269
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=24.00 E-value=1.2e+02 Score=28.78 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=40.7
Q ss_pred hhhhHHHHhhhccCCCceEEEeecCC-------------------CeEEEEeCCCCCChhhHHHhhhhc
Q 003131 214 ELDAHFLEGILSNFKGVRQFRFDKIS-------------------GELEVLFDPEALSSRSLVDGIAGR 263 (845)
Q Consensus 214 ~~c~~~ie~~l~~~~gV~~~~v~~~~-------------------~~~~V~~d~~~~~~~~i~~~i~~~ 263 (845)
..|--..|.+...++||..-+|-.+. +.+.|+|||+.++-+++++..-..
T Consensus 31 ~GCFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw~~ 99 (191)
T KOG1635|consen 31 AGCFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFWSR 99 (191)
T ss_pred ccchhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHHHc
Confidence 35777888889999999988876654 557899999999999999886654
No 270
>PF10173 Mit_KHE1: Mitochondrial K+-H+ exchange-related; InterPro: IPR018786 This entry represents a family of proteins conserved from plants to humans. Their function is not known.
Probab=23.85 E-value=1.9e+02 Score=28.41 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=17.0
Q ss_pred eEEEEeCCCCCChhhHHHhhhhc
Q 003131 241 ELEVLFDPEALSSRSLVDGIAGR 263 (845)
Q Consensus 241 ~~~V~~d~~~~~~~~i~~~i~~~ 263 (845)
.+.|.|-+..++.+++.+.+.+.
T Consensus 104 ~i~v~yP~~~~~~~~v~~~L~~l 126 (187)
T PF10173_consen 104 PIEVYYPGSVISPREVLRQLRKL 126 (187)
T ss_pred ceeEecCcccCCHHHHHHHHHHH
Confidence 67777776778888887777654
No 271
>PRK09579 multidrug efflux protein; Reviewed
Probab=23.80 E-value=1.6e+03 Score=28.62 Aligned_cols=139 Identities=11% Similarity=0.032 Sum_probs=73.1
Q ss_pred hhHHHHHHhhhCCCCceEEEEEee-----ccEEEEEECCC---CCCHHHHHHHHHh-cC-c-chhhhcccCCCCCCCCce
Q 003131 59 ACSNSVEGALMGLKGVAKASVALL-----QNKADVVFDPD---LVKDEDIKNAIED-AG-F-EAEILAESSTSGPKPQGT 127 (845)
Q Consensus 59 ~C~~~ie~~l~~~~gv~~~~v~~~-----~~~~~v~~~~~---~~~~~~i~~~i~~-~G-y-~~~~~~~~~~~~~~~~~~ 127 (845)
.....+|+.+++.|++.+...... .+...+...+. ..+.+++.+.+.+ .. + .+....-...........
T Consensus 575 ~~~~~ie~~l~~~p~v~~~~~~~G~~~~~~~~~~i~l~~~~~r~~~~~~~~~~l~~~l~~~p~~~~~~~~~~~~~g~g~~ 654 (1017)
T PRK09579 575 AYTDEFTPIFKSFPEYYSSFQINGFNGVQSGIGGFLLKPWNERERTQMELLPLVQAKLEEIPGLQIFGFNLPSLPGTGEG 654 (1017)
T ss_pred HHHHHHHHHHhcCCCeEEEEEEeccCCCccceEEEEecchHhccCCHHHHHHHHHHHHhcCCCcEEEeecCCCCCCCCCC
Confidence 467788888888888877653211 12233443322 1133444444432 11 1 111000000000000011
Q ss_pred eeeccccCCc-cch---hhHHHHHHHhcCCCCeeeEEeecC--CCeEEEEeCCC-----CCCHHHHHHHHHh--cCCcee
Q 003131 128 IVGQYTIGGM-TCA---ACVNSVEGILRGLPGVKRAVVALA--TSLGEVEYDPT-----VISKDDIANAIED--AGFEAS 194 (845)
Q Consensus 128 ~~~~~~v~gm-~C~---~C~~~ie~~l~~~~GV~~~~v~~~--~~~~~v~~~~~-----~~~~~~i~~~i~~--~G~~~~ 194 (845)
..+.+++.|- +-. .=+.++++.+++.+|+.+++.+.. ...+.+..|++ .+++.++.+.++. -|..+.
T Consensus 655 ~~v~i~i~gg~d~~~L~~~a~~l~~~l~~~~g~~~v~~~~~~~~~el~i~vd~~ka~~~Gls~~~i~~~l~~~~~G~~~~ 734 (1017)
T PRK09579 655 LPFQFVINTANDYESLLQVAQRVKQRAQESGKFAFLDIDLAFDKPEVVVDIDRAKAAQMGVSMQDLGGTLATLLGEGEIN 734 (1017)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHcCCCcEEeeccccCCCceEEEEECHHHHHHcCCCHHHHHHHHHHHhCCceee
Confidence 1345556432 211 247888999999999999887754 44667777664 3788899988875 344444
Q ss_pred eec
Q 003131 195 FVQ 197 (845)
Q Consensus 195 ~~~ 197 (845)
...
T Consensus 735 ~~~ 737 (1017)
T PRK09579 735 RFT 737 (1017)
T ss_pred EEE
Confidence 433
No 272
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=23.72 E-value=1.2e+02 Score=27.93 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=30.1
Q ss_pred eEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEE
Q 003131 794 NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMV 826 (845)
Q Consensus 794 ~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~ml 826 (845)
+-++++++.|.+...+-.+-+.|+++|++|+=+
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPV 49 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPV 49 (140)
T ss_pred ceEEEEecCCCCCccHHHHHHHHHHCCCEEEee
Confidence 457899999999999999999999999998765
No 273
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=23.71 E-value=2.2e+02 Score=28.75 Aligned_cols=20 Identities=30% Similarity=0.306 Sum_probs=17.6
Q ss_pred HHHHHHHhcCCCCeeeEEee
Q 003131 143 VNSVEGILRGLPGVKRAVVA 162 (845)
Q Consensus 143 ~~~ie~~l~~~~GV~~~~v~ 162 (845)
++.+|+.|.+++||.+++|.
T Consensus 111 eQ~le~tLs~mDGVi~ArV~ 130 (246)
T COG4669 111 EQQLEQTLSKMDGVISARVH 130 (246)
T ss_pred HHHHHHHHHhcCceEEEEEE
Confidence 68999999999999887764
No 274
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.35 E-value=1.7e+02 Score=30.82 Aligned_cols=53 Identities=23% Similarity=0.128 Sum_probs=40.2
Q ss_pred CCeEEEEEEeeCCCCh---hHHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHcCCC
Q 003131 792 DDNLIGVMGIADPVKR---EAAVVVEGLLKMGVRPVMV-TGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 792 ~~~~lG~~~~~D~lr~---~~~~~I~~L~~~gi~v~ml-TGD~~~tA~~iA~~~GI~ 844 (845)
+++.++.+.+...-.| +..+.++.+++.|++++.. .+=+...+..+|++.|+.
T Consensus 195 Gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~gv~ 251 (287)
T cd01137 195 GLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVESTVNDRLMKQVAKETGAK 251 (287)
T ss_pred CCeEeecccCCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHhCCc
Confidence 6677777776444444 4477888899999997755 777888999999999873
No 275
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=23.26 E-value=1.3e+02 Score=29.89 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=46.4
Q ss_pred HHHccCeEEEEEE--------------CCeEEEEEEeeCCCChhHHHHHHHHHhCCC--eEEEEcCCCHHHHHHHHHHcC
Q 003131 779 LEESARTGILVAY--------------DDNLIGVMGIADPVKREAAVVVEGLLKMGV--RPVMVTGDNWRTAHAVAREVC 842 (845)
Q Consensus 779 ~~~~g~~~l~va~--------------~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi--~v~mlTGD~~~tA~~iA~~~G 842 (845)
+...|+.++++.. +-.++|+-.....--+.+++.|+.||+.+. ++.++=|-..-+ ...++++|
T Consensus 106 l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~-~~~~~~~G 184 (201)
T cd02070 106 LEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVN-QEFADEIG 184 (201)
T ss_pred HHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCC-HHHHHHcC
Confidence 4556666665543 336888888888889999999999999998 775444444444 35788777
Q ss_pred CC
Q 003131 843 VI 844 (845)
Q Consensus 843 I~ 844 (845)
-+
T Consensus 185 aD 186 (201)
T cd02070 185 AD 186 (201)
T ss_pred Cc
Confidence 53
No 276
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=23.24 E-value=4.7e+02 Score=22.98 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=12.7
Q ss_pred HHHHHHhhhHHHHHHHHHccCCCeEEEE
Q 003131 413 YLEILAKGKTSDAIKKLVELAPATALLV 440 (845)
Q Consensus 413 ~l~~~~~~k~~~~l~~l~~~~~~~~~v~ 440 (845)
++-.+..+|.++..+++.+....-.+|+
T Consensus 33 f~~~RpqkK~~k~~~~~~~~Lk~Gd~Vv 60 (106)
T PRK05585 33 FLIIRPQQKRQKEHKKMLSSLAKGDEVV 60 (106)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCCCEEE
Confidence 3344444555555555544333333343
No 277
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=23.07 E-value=1.7e+03 Score=28.57 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=44.1
Q ss_pred eeccccCCccch---hhHHHHHHHhcCCCCeeeEEeecC--CCeEEEEeCCC-----CCCHHHHHHHHHhc
Q 003131 129 VGQYTIGGMTCA---ACVNSVEGILRGLPGVKRAVVALA--TSLGEVEYDPT-----VISKDDIANAIEDA 189 (845)
Q Consensus 129 ~~~~~v~gm~C~---~C~~~ie~~l~~~~GV~~~~v~~~--~~~~~v~~~~~-----~~~~~~i~~~i~~~ 189 (845)
.+.+.+.|-+-. .=+..+++.|++++|+.+++.+.. ...+.+..|+. .++++++.+.++..
T Consensus 683 ~i~i~l~G~d~~~L~~~a~~v~~~l~~~pgv~~v~~~~~~~~~e~~i~id~~~~~~~Glt~~~v~~~l~~~ 753 (1051)
T TIGR00914 683 DVAVKVFGDDLDDLDATAEKISAVLKGVPGAADVKVEQTTGLPYLTVEIDREKAARYGLTVGDVQDTVATA 753 (1051)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHhcCCCceeeeccccCCCceEEEEECHHHHHHcCCCHHHHHHHHHHH
Confidence 356666664322 236788999999999999998754 45677887764 37888998888754
No 278
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=22.87 E-value=1.6e+02 Score=26.16 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=38.9
Q ss_pred CeEEEEEEeeCCCChhHHHHHHHHHhCCC-eE-EEEcCCCHHHHHHHHHHcCCC
Q 003131 793 DNLIGVMGIADPVKREAAVVVEGLLKMGV-RP-VMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 793 ~~~lG~~~~~D~lr~~~~~~I~~L~~~gi-~v-~mlTGD~~~tA~~iA~~~GI~ 844 (845)
-.++|+-...++--+.+++.++.+|+.+- ++ +++-|=....--..+++.|.+
T Consensus 51 pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D 104 (119)
T cd02067 51 ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVD 104 (119)
T ss_pred CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCe
Confidence 36777777777778999999999999987 55 566675544435678888864
No 279
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=22.82 E-value=3.9e+02 Score=21.12 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=40.8
Q ss_pred cccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeeec
Q 003131 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFVQ 197 (845)
Q Consensus 132 ~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~ 197 (845)
+.+.|+.|+.=.-+..+++++++. .+.+.|..|.. .+.++|.+..+..||+.....
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~-~a~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDP-GFARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCc-cHHHHHHHHHHHcCCEEEEEE
Confidence 456799999999999999988752 22344444432 467899999999999986433
No 280
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=22.56 E-value=3.5e+02 Score=25.67 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=31.5
Q ss_pred hhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCC
Q 003131 141 ACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTV 176 (845)
Q Consensus 141 ~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~ 176 (845)
.-+.+|.+.+.+++||.++.+-.....+.|-++...
T Consensus 54 ~~A~~Ia~~v~~v~~V~dA~vvVtg~~A~Vgv~~~~ 89 (158)
T TIGR02898 54 DVADEIASEAAKVKGVKDATVVITGNYAYVGVDLTN 89 (158)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEECCEEEEEEEcCC
Confidence 457889999999999999999999999999987653
No 281
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=22.42 E-value=1.1e+02 Score=35.48 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=30.5
Q ss_pred CCChhHHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 804 PVKREAAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 804 ~lr~~~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
.=..|+...|++|++.|+++++ ||. ++..+|++.|+.
T Consensus 129 ~~~~e~~~~~~~l~~~G~~~vi--G~~--~~~~~A~~~gl~ 165 (526)
T TIGR02329 129 VTEEDARSCVNDLRARGIGAVV--GAG--LITDLAEQAGLH 165 (526)
T ss_pred cCHHHHHHHHHHHHHCCCCEEE--CCh--HHHHHHHHcCCc
Confidence 3357899999999999999877 777 667889999874
No 282
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=22.29 E-value=4.4e+02 Score=21.62 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=9.9
Q ss_pred hhccCCCceEEEe
Q 003131 223 ILSNFKGVRQFRF 235 (845)
Q Consensus 223 ~l~~~~gV~~~~v 235 (845)
.++.+|||.++..
T Consensus 59 ~i~~l~GVlsa~l 71 (79)
T PF03927_consen 59 AINALPGVLSASL 71 (79)
T ss_dssp HHCCSTTEEEEEE
T ss_pred HHHcCCCceEEEE
Confidence 4778899988764
No 283
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=22.27 E-value=5.6e+02 Score=32.21 Aligned_cols=216 Identities=15% Similarity=0.116 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHccCCCeE----EEEEecCCCceeeeEEeecCCcCCCCEEEEcCCCccCccEE
Q 003131 403 MLITFVLFGKYLEILAKGKTSDAIKKLVELAPATA----LLVVKDKVGKCIEEREIDALLIQSGDTLKVLPGTKLPADGI 478 (845)
Q Consensus 403 ~i~~~~~~~~~l~~~~~~k~~~~l~~l~~~~~~~~----~v~~~~r~g~~~~~~~i~~~~l~~GDii~v~~G~~vPaDg~ 478 (845)
++++...++.+.|.+++ ++.++++++....-... +..+..++=..+....+...|.+|-|.+.++.. ..=+|=-
T Consensus 45 vi~~~~~i~~~qe~~a~-~~~~~L~~~~~~~~~ViRdg~~~~I~~~~Lv~GDiv~l~~Gd~IPaD~~ll~~~-~l~VdeS 122 (917)
T TIGR01116 45 ILVANAIVGVWQERNAE-KAIEALKEYESEHAKVLRDGRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSLK-TLRVDQS 122 (917)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhccCCCceEEEECCEEEEEEHHHCCCCCEEEECCCCEeeccEEEEEec-ceEEEcc
Confidence 44445556777777665 56667776654332211 121111111111557788899999999988764 2334444
Q ss_pred EEeccee-eeccc--cCCcce-ee----eccCCCceeccceeecceEEEEEEEecCccHHHHHHHHHHhhh-ccCChhhH
Q 003131 479 VVWGTSY-VNESM--VTGEAV-PV----LKEINSPVIGGTINLHGVLHIQATKVGSDAVLSQIISLVETAQ-MSKAPIQK 549 (845)
Q Consensus 479 ll~G~~~-Vdes~--LTGEs~-pv----~k~~~~~v~aGt~~~~g~~~~~v~~~g~~t~~~~i~~~~~~~~-~~~~~~~~ 549 (845)
.+.|++. |.-.. ..++.. +. .--.|..+..|....-=...+.-+..| .+.+..+..++.. .-...+.+
T Consensus 123 ~LTGES~pv~K~~~~~~~~~~~~~~~~n~l~~GT~v~~G~~~~~V~~tG~~T~~g---ki~~~~~~~~~~~t~lq~~l~~ 199 (917)
T TIGR01116 123 ILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTGMSTEIG---KIRDEMRAAEQEDTPLQKKLDE 199 (917)
T ss_pred cccCCCCcccccccccCccccCcccccceeeeCCEEecceEEEEEEEeCCCCHHH---HHHHHhhccCCCCCCHHHHHHH
Confidence 4556554 22211 111111 00 123466676665321100111111111 1111111111111 11123455
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCCcCCCCCchHHHHHHHHhhhheeecccccchhhHHHHHHHHHH
Q 003131 550 FADFVASIFVPIVVTLALFTWLCWYVAGVLGAYPEQWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGV 627 (845)
Q Consensus 550 ~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vlv~~~P~~L~la~p~~~~~~~~~ 627 (845)
....+..+...+.+++.++....|............+ ...+..++..++.....+.|..+.++...+.....++
T Consensus 200 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~l~v~~iP~~Lp~~vti~l~~~~~~m~~~ 273 (917)
T TIGR01116 200 FGELLSKVIGLICILVWVINIGHFNDPALGGGWIQGA----IYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAKK 273 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHH----HHHHHHHHhhhhhccccccHHHHHHHHHHHHHHHHHC
Confidence 5555555444333333332222111000000000000 0124455666777888888998888888876655444
No 284
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.23 E-value=3.8e+02 Score=20.81 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=39.9
Q ss_pred cccCCccchhhHHHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCCHHHHHHHHHhcCCceeee
Q 003131 132 YTIGGMTCAACVNSVEGILRGLPGVKRAVVALATSLGEVEYDPTVISKDDIANAIEDAGFEASFV 196 (845)
Q Consensus 132 ~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 196 (845)
+...|+.|+.=..+..+++++++. ...+.|..|.. .+..+|.+.++..||+....
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~~---------g~~l~v~~d~~-~~~~~i~~~~~~~g~~~~~~ 56 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLKS---------GEVLEVLLDDP-GAVEDIPAWAKETGHEVLEV 56 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCCC---------CCEEEEEecCC-cHHHHHHHHHHHcCCEEEEE
Confidence 445689999988888888887542 23445555543 46889999999999997543
No 285
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.08 E-value=74 Score=28.60 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHhCCCeEEEEcCCCHHH
Q 003131 806 KREAAVVVEGLLKMGVRPVMVTGDNWRT 833 (845)
Q Consensus 806 r~~~~~~I~~L~~~gi~v~mlTGD~~~t 833 (845)
-+++.++++.+|+.|++++.+|++....
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 4778999999999999999999976443
No 286
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=21.84 E-value=1.2e+02 Score=30.82 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCHHHHHHHHHHcCCC
Q 003131 809 AAVVVEGLLKMGVRPVMVTGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 809 ~~~~I~~L~~~gi~v~mlTGD~~~tA~~iA~~~GI~ 844 (845)
.++.|.+|+++|+.|+=++-|.-.+=+..-+++||.
T Consensus 198 l~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi~ 233 (236)
T PF12017_consen 198 LKNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGIS 233 (236)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCCC
Confidence 367899999999999999999999999999999996
No 287
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=21.78 E-value=1.7e+02 Score=30.77 Aligned_cols=53 Identities=21% Similarity=0.296 Sum_probs=40.2
Q ss_pred CCeEEEEEEeeC---CCChhHHHHHHHHHhCCCeEEEE-cCCCHHHHHHHHHHcCCC
Q 003131 792 DDNLIGVMGIAD---PVKREAAVVVEGLLKMGVRPVMV-TGDNWRTAHAVAREVCVI 844 (845)
Q Consensus 792 ~~~~lG~~~~~D---~lr~~~~~~I~~L~~~gi~v~ml-TGD~~~tA~~iA~~~GI~ 844 (845)
+++.+|.+.+.. +--.+..+.++.+++.|++++.. ..-+..++..+|++.|+.
T Consensus 189 gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~ 245 (282)
T cd01017 189 GLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAK 245 (282)
T ss_pred CCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCc
Confidence 567777776633 33445677788999999998766 777888999999998863
No 288
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=21.74 E-value=81 Score=31.51 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=37.4
Q ss_pred eEEEEEEeeCCCChhHHHHHHHHHhCCCeEEEEcC-CCHHHHHHHHHHcCCC
Q 003131 794 NLIGVMGIADPVKREAAVVVEGLLKMGVRPVMVTG-DNWRTAHAVAREVCVI 844 (845)
Q Consensus 794 ~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v~mlTG-D~~~tA~~iA~~~GI~ 844 (845)
.+++.-++--.--++-+++|+.|++.|+|-.+++| --....+..|+++|-+
T Consensus 157 d~v~~SalMTttm~~~~~viE~L~eeGiRd~v~v~vGGApvtq~~a~~iGAD 208 (227)
T COG5012 157 DLVSMSALMTTTMIGMKDVIELLKEEGIRDKVIVMVGGAPVTQDWADKIGAD 208 (227)
T ss_pred cEEechHHHHHHHHHHHHHHHHHHHcCCccCeEEeecCccccHHHHHHhCCC
Confidence 57777777777778899999999999999665555 3333446666666643
No 289
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.58 E-value=1.3e+02 Score=25.18 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhCCCeEEEEcCCCH
Q 003131 808 EAAVVVEGLLKMGVRPVMVTGDNW 831 (845)
Q Consensus 808 ~~~~~I~~L~~~gi~v~mlTGD~~ 831 (845)
....-+++....|++.+++=|++.
T Consensus 42 ~l~k~i~~a~~~g~~~~iiiG~~e 65 (94)
T cd00861 42 RPGVKFADADLIGIPYRIVVGKKS 65 (94)
T ss_pred CcccchhHHHhcCCCEEEEECCch
Confidence 444555555666666666666554
No 290
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.56 E-value=3.7e+02 Score=20.95 Aligned_cols=54 Identities=22% Similarity=0.285 Sum_probs=38.6
Q ss_pred ChhhHHHHHHHHHccCeEEEEEECC----eEEEEEEeeCCCChhHHHHHHHHHhCCCeE
Q 003131 769 PDHVESFVVELEESARTGILVAYDD----NLIGVMGIADPVKREAAVVVEGLLKMGVRP 823 (845)
Q Consensus 769 ~~~~~~~~~~~~~~g~~~l~va~~~----~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v 823 (845)
|-.+.+.++.+.. +..+..+.|+. ..--.+.++-+-+....+.++.|+++|+++
T Consensus 9 PG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 9 PGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred CCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 4456666666666 77777776643 233345667677789999999999999875
No 291
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=20.78 E-value=3.9e+02 Score=22.27 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=39.8
Q ss_pred hHHHHHHHHHccCeEEEEE-ECCeEEEEEEeeC----------CCChhHHHHHHHHHhCCCeEEEEc
Q 003131 772 VESFVVELEESARTGILVA-YDDNLIGVMGIAD----------PVKREAAVVVEGLLKMGVRPVMVT 827 (845)
Q Consensus 772 ~~~~~~~~~~~g~~~l~va-~~~~~lG~~~~~D----------~lr~~~~~~I~~L~~~gi~v~mlT 827 (845)
+.+..+.+.+.+.+.+.+- .++.++|++..+| +......++++.+++.+++...+-
T Consensus 12 i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 78 (96)
T cd04614 12 LPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKSEVVTATKRTTVSECAQKMKRNRIEQIPII 78 (96)
T ss_pred HHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCCCcEEecCCCCHHHHHHHHHHhCCCeeeEE
Confidence 4455566666666665554 3689999998777 566777889999999999744433
No 292
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=20.40 E-value=96 Score=30.18 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=22.0
Q ss_pred CChhHHHHHHHHHhCCCeEEEEcC
Q 003131 805 VKREAAVVVEGLLKMGVRPVMVTG 828 (845)
Q Consensus 805 lr~~~~~~I~~L~~~gi~v~mlTG 828 (845)
+.+++.+++..|+++|.+++|+|-
T Consensus 32 ~~~g~i~al~~l~~~gy~lVvvTN 55 (181)
T COG0241 32 FIPGVIPALLKLQRAGYKLVVVTN 55 (181)
T ss_pred cCccHHHHHHHHHhCCCeEEEEEC
Confidence 468999999999999999999984
No 293
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=20.33 E-value=83 Score=29.91 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHhCCCeEEEEcC
Q 003131 807 REAAVVVEGLLKMGVRPVMVTG 828 (845)
Q Consensus 807 ~~~~~~I~~L~~~gi~v~mlTG 828 (845)
++++++|++|.+.|.+++|+|=
T Consensus 32 ~~v~~~L~~l~~~Gy~IvIvTN 53 (159)
T PF08645_consen 32 PGVPEALRELHKKGYKIVIVTN 53 (159)
T ss_dssp TTHHHHHHHHHHTTEEEEEEEE
T ss_pred hhHHHHHHHHHhcCCeEEEEeC
Confidence 5799999999999999999983
No 294
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.25 E-value=2e+02 Score=26.40 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=36.8
Q ss_pred CCeEEEEEEeeCCCChhHHHHHHHHHhCCC-eEEEEcC-CCHHHHHHHHHHcCCC
Q 003131 792 DDNLIGVMGIADPVKREAAVVVEGLLKMGV-RPVMVTG-DNWRTAHAVAREVCVI 844 (845)
Q Consensus 792 ~~~~lG~~~~~D~lr~~~~~~I~~L~~~gi-~v~mlTG-D~~~tA~~iA~~~GI~ 844 (845)
+-.++|+-++...--+..+++++.|+++|. ++.++-| -.+..-..--+++|++
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC
Confidence 346777888888888899999999999987 4444444 3443335556777764
No 295
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=20.23 E-value=2.2e+02 Score=35.08 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHccCeEEEEEECCeEEEEEEee-C----CCChhHHHHHHHHHhC-CCeEEEEcCCCHHHHHHHHHH
Q 003131 771 HVESFVVELEESARTGILVAYDDNLIGVMGIA-D----PVKREAAVVVEGLLKM-GVRPVMVTGDNWRTAHAVARE 840 (845)
Q Consensus 771 ~~~~~~~~~~~~g~~~l~va~~~~~lG~~~~~-D----~lr~~~~~~I~~L~~~-gi~v~mlTGD~~~tA~~iA~~ 840 (845)
+.......+.....+.+.+-|||++.....-. + .+-++..++++.|.+. +-.|+++||-...+-...-..
T Consensus 494 ~~~~~~~~y~~a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~ 569 (797)
T PLN03063 494 PEQDVIQQYSKSNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGE 569 (797)
T ss_pred CHHHHHHHHHhccCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCC
Confidence 34556677888788999999999998532211 1 2567888999999877 678999999999887776544
No 296
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=20.16 E-value=4.9e+02 Score=26.31 Aligned_cols=92 Identities=10% Similarity=0.050 Sum_probs=50.8
Q ss_pred HHHHHHhcCCCCeeeEEeecCCCeEEEEeCCCCCC--HHHHHHHHHhcCCceeeeccC---CcceeE--EEEeccc-chh
Q 003131 144 NSVEGILRGLPGVKRAVVALATSLGEVEYDPTVIS--KDDIANAIEDAGFEASFVQSS---GQDKIL--LQVTGVL-CEL 215 (845)
Q Consensus 144 ~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~--~~~i~~~i~~~G~~~~~~~~~---~~~~~~--~~v~gm~-c~~ 215 (845)
..+++.+++.+.-.. .-..-.+.+..+++... ...+.+.+++.+|...-.+.. +.++.. ..+.... .+.
T Consensus 124 ~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~ 200 (225)
T PRK15385 124 REAAQRINQLPVSAE---GEKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRK 200 (225)
T ss_pred HHHHHHHhhcccccc---cceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchh
Confidence 556667766654211 11112344554443221 356678888889988765432 233333 3332222 233
Q ss_pred hhHHHHhhhccCCCceEEEeecC
Q 003131 216 DAHFLEGILSNFKGVRQFRFDKI 238 (845)
Q Consensus 216 c~~~ie~~l~~~~gV~~~~v~~~ 238 (845)
.-..+-..|+..|||.++.++..
T Consensus 201 ~le~iv~~L~~~pgV~~v~W~~~ 223 (225)
T PRK15385 201 TRELIISRIGDNDNITAIHWSID 223 (225)
T ss_pred hHHHHHHHHhCCCCeEEEEEEec
Confidence 44666677888899999998754
No 297
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=20.15 E-value=4.6e+02 Score=26.26 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCccCccEEEEe
Q 003131 461 SGDTLKVLPGTKLPADGIVVW 481 (845)
Q Consensus 461 ~GDii~v~~G~~vPaDg~ll~ 481 (845)
-|....+...|.+|=|.++++
T Consensus 41 ~~~~~~i~~~~L~~GDiI~l~ 61 (230)
T PF00122_consen 41 DGRWQKIPSSELVPGDIIILK 61 (230)
T ss_dssp TTEEEEEEGGGT-TTSEEEEE
T ss_pred ccccccchHhhccceeeeecc
Confidence 467777777777777777776
No 298
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=20.15 E-value=3e+02 Score=28.74 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=32.6
Q ss_pred eEEEEEEeeCCCChhHHHHHHHHHhCCCeE-EEEcCCCHH
Q 003131 794 NLIGVMGIADPVKREAAVVVEGLLKMGVRP-VMVTGDNWR 832 (845)
Q Consensus 794 ~~lG~~~~~D~lr~~~~~~I~~L~~~gi~v-~mlTGD~~~ 832 (845)
..+--+..+|.=|.+..+.+..++.+||+- ..||||.+.
T Consensus 60 ~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~ 99 (272)
T TIGR00676 60 PTVPHLTCIGATREEIREILREYRELGIRHILALRGDPPK 99 (272)
T ss_pred CeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 445667778888999999999999999985 459999983
No 299
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=20.02 E-value=4.1e+02 Score=21.71 Aligned_cols=70 Identities=11% Similarity=0.094 Sum_probs=48.2
Q ss_pred EEEEECCCCCCHHHHHHHHHhcCcchhhhcccCCCCCCCCceeeeccccCCccchhhHHHHHHHhcCCCCeeeEEe
Q 003131 86 ADVVFDPDLVKDEDIKNAIEDAGFEAEILAESSTSGPKPQGTIVGQYTIGGMTCAACVNSVEGILRGLPGVKRAVV 161 (845)
Q Consensus 86 ~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v 161 (845)
..+..++.+--.+.+...+..-||..+-..-... ..++..++++.++ -......+.+.|+++..|.++++
T Consensus 6 lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t---~~~~~sriti~v~---~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 6 LTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQN---TDAQNINIELTVA---SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred EEEEEECCccHHHHHHHHHhcCCeeeeeEEeeec---CCCCEEEEEEEEC---CCchHHHHHHHHhcCcCeEEEEE
Confidence 3444444444567888888999998765433222 1244566777774 47788999999999999988775
Done!