Query 003132
Match_columns 845
No_of_seqs 276 out of 2159
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 17:37:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0825 PHD Zn-finger protein 99.7 8.7E-18 1.9E-22 192.4 2.3 139 24-179 123-266 (1134)
2 PHA02926 zinc finger-like prot 98.9 6.7E-10 1.5E-14 114.9 1.5 64 15-78 161-238 (242)
3 KOG1244 Predicted transcriptio 98.8 7.9E-10 1.7E-14 116.7 1.3 57 117-179 275-331 (336)
4 PHA02929 N1R/p28-like protein; 98.8 2.5E-09 5.4E-14 112.2 4.3 55 21-75 171-232 (238)
5 PF13639 zf-RING_2: Ring finge 98.8 1.4E-09 3.1E-14 85.3 1.6 42 25-66 1-44 (44)
6 PLN03208 E3 ubiquitin-protein 98.7 1.1E-08 2.3E-13 104.4 5.6 60 22-82 16-91 (193)
7 KOG0823 Predicted E3 ubiquitin 98.6 1.8E-08 3.9E-13 104.7 3.8 62 20-82 43-107 (230)
8 PF12678 zf-rbx1: RING-H2 zinc 98.6 3.3E-08 7E-13 86.3 3.1 43 24-66 19-73 (73)
9 PF13923 zf-C3HC4_2: Zinc fing 98.6 3E-08 6.6E-13 76.3 2.4 39 27-65 1-39 (39)
10 KOG0317 Predicted E3 ubiquitin 98.6 3.7E-08 8E-13 105.1 3.5 50 23-73 238-287 (293)
11 PF15227 zf-C3HC4_4: zinc fing 98.5 5.7E-08 1.2E-12 76.8 2.6 38 27-65 1-42 (42)
12 cd00162 RING RING-finger (Real 98.5 1.1E-07 2.3E-12 71.8 3.3 43 26-68 1-44 (45)
13 PF13920 zf-C3HC4_3: Zinc fing 98.5 8.7E-08 1.9E-12 77.3 2.7 48 23-71 1-49 (50)
14 KOG0320 Predicted E3 ubiquitin 98.4 1.1E-07 2.4E-12 95.9 2.3 49 23-71 130-179 (187)
15 KOG4628 Predicted E3 ubiquitin 98.3 2E-07 4.3E-12 102.4 2.3 46 25-70 230-278 (348)
16 PF00097 zf-C3HC4: Zinc finger 98.3 3.1E-07 6.7E-12 70.7 2.5 39 27-65 1-41 (41)
17 smart00504 Ubox Modified RING 98.3 6.5E-07 1.4E-11 74.0 3.6 45 25-70 2-46 (63)
18 PF00628 PHD: PHD-finger; Int 98.3 1.5E-07 3.3E-12 75.6 -0.4 48 125-178 1-50 (51)
19 TIGR00599 rad18 DNA repair pro 98.1 1.1E-06 2.5E-11 98.2 3.2 50 21-71 23-72 (397)
20 KOG1512 PHD Zn-finger protein 98.1 7.4E-07 1.6E-11 95.2 1.5 55 117-179 308-363 (381)
21 COG5540 RING-finger-containing 98.1 1.2E-06 2.6E-11 94.4 2.8 49 22-70 321-372 (374)
22 PF12861 zf-Apc11: Anaphase-pr 98.1 1.9E-06 4E-11 78.2 3.0 48 24-71 21-83 (85)
23 PF14634 zf-RING_5: zinc-RING 98.1 2.6E-06 5.7E-11 67.4 3.0 42 26-67 1-44 (44)
24 COG5243 HRD1 HRD ubiquitin lig 98.0 2.6E-06 5.7E-11 93.7 3.3 54 21-74 284-349 (491)
25 smart00184 RING Ring finger. E 98.0 3.3E-06 7.2E-11 61.4 2.7 38 27-65 1-39 (39)
26 smart00249 PHD PHD zinc finger 98.0 4.7E-06 1E-10 63.8 3.3 45 126-176 2-47 (47)
27 KOG2177 Predicted E3 ubiquitin 98.0 3.2E-06 6.8E-11 83.7 1.8 46 21-67 10-55 (386)
28 KOG0287 Postreplication repair 97.9 3.1E-06 6.7E-11 92.3 1.4 46 25-71 24-69 (442)
29 COG5194 APC11 Component of SCF 97.9 5.9E-06 1.3E-10 74.3 2.3 48 25-72 21-83 (88)
30 KOG0955 PHD finger protein BR1 97.9 6.9E-06 1.5E-10 100.6 3.6 104 122-238 218-329 (1051)
31 KOG0802 E3 ubiquitin ligase [P 97.8 7.2E-06 1.6E-10 94.9 1.3 48 21-68 288-339 (543)
32 COG5432 RAD18 RING-finger-cont 97.8 1E-05 2.2E-10 87.0 2.1 48 25-73 26-73 (391)
33 KOG2164 Predicted E3 ubiquitin 97.8 1.1E-05 2.4E-10 91.9 2.2 49 24-73 186-239 (513)
34 COG5574 PEX10 RING-finger-cont 97.7 1.1E-05 2.4E-10 85.8 1.9 49 22-71 213-263 (271)
35 KOG4299 PHD Zn-finger protein 97.7 7.6E-06 1.6E-10 94.8 0.8 50 124-179 254-305 (613)
36 KOG1039 Predicted E3 ubiquitin 97.7 1.2E-05 2.6E-10 88.8 2.1 52 22-73 159-224 (344)
37 KOG1973 Chromatin remodeling p 97.7 1.2E-05 2.7E-10 86.0 2.0 36 142-179 230-268 (274)
38 KOG4443 Putative transcription 97.7 1.9E-05 4.1E-10 92.0 2.5 56 118-179 63-118 (694)
39 PF04564 U-box: U-box domain; 97.7 2.3E-05 5.1E-10 68.2 2.5 48 23-71 3-51 (73)
40 PF13445 zf-RING_UBOX: RING-ty 97.7 1.9E-05 4.1E-10 63.3 1.6 36 27-63 1-43 (43)
41 COG5141 PHD zinc finger-contai 97.7 1.4E-05 3.1E-10 90.3 1.1 103 123-238 193-303 (669)
42 KOG2930 SCF ubiquitin ligase, 97.6 2.1E-05 4.5E-10 73.7 0.9 50 22-71 44-109 (114)
43 KOG0978 E3 ubiquitin ligase in 97.5 2.6E-05 5.6E-10 92.2 0.8 52 24-76 643-695 (698)
44 PF14835 zf-RING_6: zf-RING of 97.5 3.7E-05 8E-10 66.7 1.3 45 24-70 7-51 (65)
45 TIGR00570 cdk7 CDK-activating 97.5 7.5E-05 1.6E-09 81.5 3.8 50 24-73 3-57 (309)
46 KOG4265 Predicted E3 ubiquitin 97.5 7.9E-05 1.7E-09 82.1 3.4 65 6-72 273-338 (349)
47 KOG4323 Polycomb-like PHD Zn-f 97.4 9.6E-05 2.1E-09 84.2 3.9 50 126-179 171-224 (464)
48 KOG0311 Predicted E3 ubiquitin 97.4 1.8E-05 3.9E-10 87.0 -2.1 47 24-70 43-90 (381)
49 cd04718 BAH_plant_2 BAH, or Br 97.4 0.00011 2.4E-09 72.8 3.6 27 153-179 1-27 (148)
50 KOG0954 PHD finger protein [Ge 97.4 4.5E-05 9.7E-10 89.7 0.5 106 123-243 271-385 (893)
51 COG5034 TNG2 Chromatin remodel 97.3 9.8E-05 2.1E-09 78.4 1.7 38 140-179 230-270 (271)
52 KOG0956 PHD finger protein AF1 97.3 0.00012 2.6E-09 85.7 2.1 100 124-236 6-115 (900)
53 KOG1493 Anaphase-promoting com 97.1 9.1E-05 2E-09 66.3 -0.6 48 24-71 20-82 (84)
54 COG5219 Uncharacterized conser 97.1 0.00016 3.5E-09 86.8 1.1 50 22-71 1467-1524(1525)
55 KOG1245 Chromatin remodeling c 97.0 0.00013 2.8E-09 92.5 -0.4 51 123-179 1108-1158(1404)
56 KOG0828 Predicted E3 ubiquitin 96.9 0.00033 7.3E-09 79.8 1.8 50 21-70 568-634 (636)
57 KOG2660 Locus-specific chromos 96.9 0.00017 3.7E-09 78.9 -0.7 49 24-72 15-63 (331)
58 KOG0383 Predicted helicase [Ge 96.9 0.00029 6.3E-09 83.8 1.1 47 124-179 48-94 (696)
59 KOG4172 Predicted E3 ubiquitin 96.8 0.00027 5.9E-09 59.9 0.0 48 24-72 7-56 (62)
60 KOG0297 TNF receptor-associate 96.6 0.001 2.2E-08 74.8 2.0 56 21-76 18-73 (391)
61 KOG2879 Predicted E3 ubiquitin 96.5 0.0021 4.6E-08 69.2 3.6 56 18-73 233-290 (298)
62 KOG0804 Cytoplasmic Zn-finger 96.4 0.0018 3.9E-08 73.4 2.7 47 19-67 170-219 (493)
63 KOG4159 Predicted E3 ubiquitin 96.3 0.0019 4.2E-08 73.0 2.3 49 22-71 82-130 (398)
64 PF11793 FANCL_C: FANCL C-term 96.3 0.00092 2E-08 58.4 -0.2 47 24-70 2-66 (70)
65 KOG1734 Predicted RING-contain 96.1 0.0019 4.2E-08 69.4 0.8 49 23-71 223-282 (328)
66 PF11789 zf-Nse: Zinc-finger o 96.1 0.0038 8.3E-08 52.9 2.3 43 22-64 9-53 (57)
67 KOG0827 Predicted E3 ubiquitin 96.1 0.0026 5.6E-08 71.2 1.6 44 25-68 5-54 (465)
68 KOG0824 Predicted E3 ubiquitin 96.0 0.003 6.4E-08 68.9 1.8 47 24-71 7-54 (324)
69 PF13831 PHD_2: PHD-finger; PD 95.8 0.0013 2.8E-08 51.0 -1.5 34 142-177 2-36 (36)
70 smart00744 RINGv The RING-vari 95.8 0.0062 1.3E-07 50.0 2.3 41 26-66 1-49 (49)
71 PHA03096 p28-like protein; Pro 95.7 0.0043 9.3E-08 67.4 1.4 43 25-67 179-231 (284)
72 KOG1813 Predicted E3 ubiquitin 95.3 0.0079 1.7E-07 65.5 1.8 49 24-73 241-289 (313)
73 KOG1785 Tyrosine kinase negati 95.2 0.0067 1.4E-07 68.2 0.9 52 21-73 366-419 (563)
74 KOG4692 Predicted E3 ubiquitin 95.2 0.0071 1.5E-07 67.2 0.9 51 19-70 417-467 (489)
75 KOG1002 Nucleotide excision re 95.1 0.0069 1.5E-07 69.9 0.7 49 21-70 533-586 (791)
76 KOG1645 RING-finger-containing 95.1 0.0086 1.9E-07 67.6 1.3 49 23-71 3-57 (463)
77 COG5152 Uncharacterized conser 94.8 0.01 2.2E-07 61.7 0.8 46 24-70 196-241 (259)
78 KOG0957 PHD finger protein [Ge 94.8 0.011 2.4E-07 67.9 1.0 49 125-179 546-598 (707)
79 COG5222 Uncharacterized conser 94.5 0.017 3.7E-07 63.1 1.7 44 25-68 275-319 (427)
80 PF04641 Rtf2: Rtf2 RING-finge 93.5 0.07 1.5E-06 57.0 3.8 53 21-74 110-165 (260)
81 KOG0826 Predicted E3 ubiquitin 93.0 0.058 1.3E-06 59.8 2.5 47 23-69 299-345 (357)
82 KOG4275 Predicted E3 ubiquitin 92.8 0.024 5.3E-07 61.8 -0.7 43 23-70 299-342 (350)
83 PHA02825 LAP/PHD finger-like p 92.1 0.16 3.5E-06 51.5 4.0 52 22-73 6-62 (162)
84 PF15446 zf-PHD-like: PHD/FYVE 91.4 0.17 3.7E-06 51.7 3.4 51 126-179 2-60 (175)
85 KOG1941 Acetylcholine receptor 91.3 0.067 1.4E-06 60.4 0.4 45 24-68 365-414 (518)
86 KOG3039 Uncharacterized conser 90.4 0.21 4.6E-06 53.8 3.1 50 22-71 219-271 (303)
87 KOG1952 Transcription factor N 90.1 0.14 3.1E-06 62.3 1.7 48 22-69 189-246 (950)
88 PF14570 zf-RING_4: RING/Ubox 90.0 0.23 4.9E-06 41.4 2.3 43 27-69 1-47 (48)
89 COG5175 MOT2 Transcriptional r 90.0 0.15 3.3E-06 56.8 1.7 51 20-70 10-64 (480)
90 KOG4445 Uncharacterized conser 90.0 0.082 1.8E-06 58.1 -0.4 33 24-56 115-149 (368)
91 KOG4739 Uncharacterized protei 89.2 0.19 4E-06 53.7 1.6 46 26-73 5-51 (233)
92 PHA02862 5L protein; Provision 89.1 0.28 6E-06 49.3 2.5 48 24-71 2-54 (156)
93 KOG1473 Nucleosome remodeling 89.0 0.089 1.9E-06 65.5 -1.1 47 124-179 429-479 (1414)
94 KOG1814 Predicted E3 ubiquitin 88.8 0.19 4.2E-06 57.2 1.4 45 24-68 184-238 (445)
95 KOG0298 DEAD box-containing he 88.7 0.12 2.6E-06 65.2 -0.3 50 19-68 1148-1197(1394)
96 PF07800 DUF1644: Protein of u 88.2 0.45 9.7E-06 48.4 3.3 52 23-74 1-95 (162)
97 KOG1571 Predicted E3 ubiquitin 87.9 0.25 5.4E-06 55.5 1.5 46 22-71 303-348 (355)
98 COG5236 Uncharacterized conser 87.8 0.45 9.8E-06 53.3 3.5 59 13-72 50-110 (493)
99 KOG4185 Predicted E3 ubiquitin 87.3 0.34 7.4E-06 52.0 2.1 45 25-69 4-54 (296)
100 KOG1473 Nucleosome remodeling 86.9 0.34 7.4E-06 60.7 2.0 48 123-179 344-391 (1414)
101 KOG2932 E3 ubiquitin ligase in 86.7 0.26 5.6E-06 54.6 0.8 46 26-73 92-137 (389)
102 PF08746 zf-RING-like: RING-li 86.3 0.58 1.3E-05 37.7 2.4 39 27-65 1-43 (43)
103 KOG1428 Inhibitor of type V ad 85.2 0.48 1E-05 60.5 2.1 54 20-73 3482-3547(3738)
104 KOG1001 Helicase-like transcri 85.1 0.41 8.8E-06 57.9 1.5 44 25-70 455-500 (674)
105 KOG0957 PHD finger protein [Ge 85.0 0.4 8.7E-06 55.8 1.3 78 125-214 121-206 (707)
106 KOG0956 PHD finger protein AF1 84.8 0.64 1.4E-05 55.9 2.8 35 667-701 680-714 (900)
107 PF14447 Prok-RING_4: Prokaryo 84.6 0.48 1E-05 40.6 1.2 45 24-71 7-51 (55)
108 KOG3970 Predicted E3 ubiquitin 83.6 0.74 1.6E-05 49.2 2.4 47 24-70 50-105 (299)
109 PF05883 Baculo_RING: Baculovi 83.5 0.59 1.3E-05 46.3 1.6 36 24-59 26-69 (134)
110 KOG4299 PHD Zn-finger protein 83.4 1 2.2E-05 53.7 3.7 50 24-73 253-310 (613)
111 PF10367 Vps39_2: Vacuolar sor 82.5 0.59 1.3E-05 42.2 1.0 31 23-53 77-108 (109)
112 KOG2114 Vacuolar assembly/sort 81.8 0.7 1.5E-05 56.7 1.6 44 24-70 840-883 (933)
113 PF10272 Tmpp129: Putative tra 79.9 1.7 3.8E-05 49.2 3.8 53 19-71 266-352 (358)
114 PF07227 DUF1423: Protein of u 79.7 1.2 2.6E-05 51.6 2.4 52 125-179 130-192 (446)
115 KOG4443 Putative transcription 79.4 0.55 1.2E-05 56.2 -0.3 54 122-179 17-71 (694)
116 PF14446 Prok-RING_1: Prokaryo 78.2 1.1 2.3E-05 38.4 1.2 35 123-162 5-39 (54)
117 KOG1701 Focal adhesion adaptor 76.3 0.65 1.4E-05 53.3 -0.8 44 21-67 299-342 (468)
118 KOG4367 Predicted Zn-finger pr 76.3 1.2 2.6E-05 51.4 1.2 34 22-56 2-35 (699)
119 KOG1246 DNA-binding protein ju 75.5 2.2 4.8E-05 53.2 3.3 51 122-179 154-204 (904)
120 KOG0383 Predicted helicase [Ge 75.1 1.9 4.2E-05 52.5 2.6 37 143-179 188-224 (696)
121 KOG3002 Zn finger protein [Gen 74.2 1.9 4.2E-05 47.7 2.1 47 23-72 47-93 (299)
122 PF12906 RINGv: RING-variant d 73.4 1.9 4E-05 35.4 1.3 39 27-65 1-47 (47)
123 KOG3800 Predicted E3 ubiquitin 72.9 2.4 5.3E-05 46.8 2.5 45 26-70 2-51 (300)
124 PF05290 Baculo_IE-1: Baculovi 72.4 2.3 4.9E-05 42.4 1.9 47 25-71 81-133 (140)
125 KOG4718 Non-SMC (structural ma 72.4 2.1 4.5E-05 45.6 1.7 46 25-70 182-227 (235)
126 KOG0825 PHD Zn-finger protein 71.6 1.8 3.9E-05 52.9 1.2 60 15-74 87-158 (1134)
127 KOG2817 Predicted E3 ubiquitin 70.9 2.5 5.5E-05 48.3 2.1 47 24-70 334-385 (394)
128 KOG1940 Zn-finger protein [Gen 70.5 2.4 5.3E-05 46.5 1.8 44 24-67 158-204 (276)
129 COG5183 SSM4 Protein involved 69.2 4.5 9.8E-05 49.9 3.8 58 16-73 4-69 (1175)
130 PF02891 zf-MIZ: MIZ/SP-RING z 67.7 3.1 6.8E-05 34.5 1.5 42 25-67 3-49 (50)
131 PF11793 FANCL_C: FANCL C-term 66.9 0.95 2.1E-05 39.8 -1.8 53 124-179 3-64 (70)
132 KOG3268 Predicted E3 ubiquitin 66.9 3.3 7.1E-05 43.2 1.8 47 24-70 165-228 (234)
133 PF03854 zf-P11: P-11 zinc fin 61.8 3.9 8.4E-05 34.5 1.0 42 27-70 5-46 (50)
134 KOG0006 E3 ubiquitin-protein l 60.4 6.3 0.00014 44.3 2.6 35 21-56 218-254 (446)
135 KOG2034 Vacuolar sorting prote 60.0 3.9 8.6E-05 50.8 1.0 33 23-55 816-849 (911)
136 KOG0309 Conserved WD40 repeat- 59.0 6.4 0.00014 48.4 2.5 53 12-64 1006-1069(1081)
137 KOG1812 Predicted E3 ubiquitin 58.6 5.4 0.00012 45.5 1.7 42 23-64 145-195 (384)
138 PLN02189 cellulose synthase 58.4 7.8 0.00017 49.2 3.2 51 23-73 33-90 (1040)
139 PF13901 DUF4206: Domain of un 57.3 10 0.00022 39.6 3.4 53 117-179 145-198 (202)
140 COG5220 TFB3 Cdk activating ki 55.4 2.8 6E-05 45.4 -1.1 50 22-71 8-65 (314)
141 COG5574 PEX10 RING-finger-cont 55.2 9.3 0.0002 41.9 2.8 35 23-57 94-132 (271)
142 KOG3053 Uncharacterized conser 55.1 5.2 0.00011 43.8 0.8 49 23-71 19-83 (293)
143 KOG3579 Predicted E3 ubiquitin 55.0 5.1 0.00011 44.4 0.8 37 21-57 265-304 (352)
144 PLN02436 cellulose synthase A 54.8 9.8 0.00021 48.5 3.2 51 23-73 35-92 (1094)
145 KOG1100 Predicted E3 ubiquitin 54.0 6.4 0.00014 41.5 1.3 39 27-70 161-200 (207)
146 KOG4362 Transcriptional regula 53.3 4.3 9.4E-05 49.4 -0.1 47 22-69 19-68 (684)
147 PLN02638 cellulose synthase A 52.9 11 0.00025 48.0 3.4 52 22-73 15-73 (1079)
148 KOG3161 Predicted E3 ubiquitin 52.5 5.3 0.00012 48.3 0.5 40 25-67 12-54 (861)
149 PF12678 zf-rbx1: RING-H2 zinc 51.8 3.5 7.5E-05 36.4 -0.9 29 145-177 45-73 (73)
150 PF14569 zf-UDP: Zinc-binding 49.9 12 0.00025 34.6 2.1 49 23-71 8-63 (80)
151 KOG1512 PHD Zn-finger protein 49.7 4.9 0.00011 44.5 -0.4 56 124-179 259-317 (381)
152 KOG1632 Uncharacterized PHD Zn 49.2 8.8 0.00019 43.3 1.5 37 143-179 74-113 (345)
153 PF05199 GMC_oxred_C: GMC oxid 49.2 5.4 0.00012 37.5 -0.1 24 674-697 114-137 (144)
154 KOG1815 Predicted E3 ubiquitin 49.0 8.1 0.00017 44.6 1.2 37 22-58 68-104 (444)
155 KOG1812 Predicted E3 ubiquitin 48.4 8.9 0.00019 43.8 1.4 42 23-65 305-351 (384)
156 PLN02400 cellulose synthase 48.0 15 0.00032 47.1 3.3 51 23-73 35-92 (1085)
157 PF12861 zf-Apc11: Anaphase-pr 47.7 8.2 0.00018 35.9 0.8 32 147-179 49-80 (85)
158 PF04216 FdhE: Protein involve 47.0 7.2 0.00016 42.4 0.4 47 23-69 171-221 (290)
159 KOG1734 Predicted RING-contain 46.9 5.5 0.00012 43.9 -0.5 56 121-179 222-279 (328)
160 KOG0824 Predicted E3 ubiquitin 46.1 7.2 0.00016 43.5 0.2 55 17-71 98-152 (324)
161 PLN02195 cellulose synthase A 46.0 18 0.00038 46.0 3.5 49 22-70 4-59 (977)
162 PHA02929 N1R/p28-like protein; 43.8 11 0.00023 40.8 1.1 53 122-179 173-225 (238)
163 KOG1609 Protein involved in mR 43.6 20 0.00043 38.3 3.1 49 24-72 78-136 (323)
164 KOG3899 Uncharacterized conser 42.9 12 0.00026 41.8 1.2 29 43-71 325-366 (381)
165 KOG4628 Predicted E3 ubiquitin 42.4 10 0.00022 43.1 0.7 47 124-179 230-276 (348)
166 PF14805 THDPS_N_2: Tetrahydro 41.8 57 0.0012 29.4 5.1 44 537-602 1-44 (70)
167 PRK14559 putative protein seri 41.4 24 0.00052 43.1 3.6 47 125-179 3-50 (645)
168 PLN02915 cellulose synthase A 40.7 22 0.00047 45.5 3.1 52 22-73 13-71 (1044)
169 KOG0827 Predicted E3 ubiquitin 39.3 2.9 6.2E-05 47.9 -4.1 53 21-73 193-248 (465)
170 PF07975 C1_4: TFIIH C1-like d 38.1 30 0.00065 29.4 2.6 40 27-66 2-50 (51)
171 KOG3799 Rab3 effector RIM1 and 36.1 14 0.0003 37.3 0.4 48 23-70 64-118 (169)
172 KOG4430 Topoisomerase I-bindin 35.9 38 0.00082 40.7 4.0 52 24-75 260-314 (553)
173 PLN02400 cellulose synthase 34.3 38 0.00082 43.6 3.9 54 121-179 34-87 (1085)
174 KOG2068 MOT2 transcription fac 33.9 40 0.00086 38.2 3.5 49 22-70 247-298 (327)
175 PLN02436 cellulose synthase A 33.2 40 0.00086 43.4 3.7 54 121-179 34-87 (1094)
176 KOG4218 Nuclear hormone recept 32.9 14 0.00031 42.0 -0.0 47 22-68 13-76 (475)
177 KOG2932 E3 ubiquitin ligase in 32.7 17 0.00038 40.9 0.6 34 143-179 89-132 (389)
178 COG5432 RAD18 RING-finger-cont 32.7 11 0.00025 41.9 -0.8 42 124-179 26-68 (391)
179 KOG0269 WD40 repeat-containing 30.9 37 0.00081 42.1 2.9 46 25-70 780-828 (839)
180 KOG1844 PHD Zn-finger proteins 30.7 29 0.00062 40.2 1.9 38 141-179 98-135 (508)
181 PF14446 Prok-RING_1: Prokaryo 30.3 40 0.00088 29.1 2.2 33 22-54 3-38 (54)
182 PF10497 zf-4CXXC_R1: Zinc-fin 29.6 53 0.0011 31.4 3.1 48 22-69 5-71 (105)
183 PF10497 zf-4CXXC_R1: Zinc-fin 29.4 20 0.00044 34.1 0.3 50 123-179 7-70 (105)
184 COG5540 RING-finger-containing 29.4 13 0.00027 41.8 -1.2 54 119-181 319-372 (374)
185 PF08746 zf-RING-like: RING-li 29.2 16 0.00034 29.6 -0.4 30 145-176 12-43 (43)
186 PF14569 zf-UDP: Zinc-binding 28.9 13 0.00029 34.2 -0.9 53 122-179 8-60 (80)
187 TIGR00622 ssl1 transcription f 27.6 41 0.0009 32.8 2.1 42 25-66 56-110 (112)
188 TIGR01562 FdhE formate dehydro 27.6 20 0.00042 40.2 -0.1 45 24-68 184-233 (305)
189 PF15446 zf-PHD-like: PHD/FYVE 27.6 40 0.00087 35.1 2.1 22 142-163 122-143 (175)
190 PLN02638 cellulose synthase A 27.4 37 0.00081 43.7 2.2 53 122-179 16-68 (1079)
191 KOG1815 Predicted E3 ubiquitin 26.9 41 0.00088 39.0 2.3 32 38-70 179-210 (444)
192 KOG3113 Uncharacterized conser 26.6 63 0.0014 35.8 3.4 48 22-71 109-159 (293)
193 smart00647 IBR In Between Ring 25.9 20 0.00043 29.5 -0.4 20 38-57 41-60 (64)
194 PRK03564 formate dehydrogenase 25.5 35 0.00075 38.4 1.3 45 23-67 186-234 (309)
195 KOG1973 Chromatin remodeling p 25.3 31 0.00066 37.8 0.9 46 22-68 217-268 (274)
196 TIGR00570 cdk7 CDK-activating 25.2 40 0.00086 38.0 1.7 51 122-179 2-52 (309)
197 KOG1829 Uncharacterized conser 25.2 22 0.00048 43.0 -0.3 49 123-179 511-559 (580)
198 PF13982 YbfN: YbfN-like lipop 24.8 48 0.001 31.0 1.9 21 637-657 24-44 (89)
199 TIGR00595 priA primosomal prot 24.1 67 0.0015 38.0 3.4 10 170-179 253-262 (505)
200 PF07191 zinc-ribbons_6: zinc- 23.8 18 0.00038 32.7 -1.0 43 25-73 2-44 (70)
201 PF10571 UPF0547: Uncharacteri 23.5 29 0.00062 25.7 0.1 16 54-69 9-24 (26)
202 KOG2164 Predicted E3 ubiquitin 23.4 24 0.00051 42.0 -0.5 54 118-180 181-235 (513)
203 KOG3039 Uncharacterized conser 23.3 47 0.001 36.6 1.7 31 25-56 44-74 (303)
204 PHA02926 zinc finger-like prot 23.2 35 0.00075 37.1 0.7 59 121-179 168-228 (242)
205 PF13922 PHD_3: PHD domain of 23.1 26 0.00056 31.5 -0.2 21 142-162 41-61 (69)
206 PF13901 DUF4206: Domain of un 23.0 56 0.0012 34.2 2.2 40 22-66 150-196 (202)
207 PLN02915 cellulose synthase A 22.9 57 0.0012 42.0 2.6 53 122-179 14-66 (1044)
208 PLN02195 cellulose synthase A 22.7 56 0.0012 41.8 2.5 53 122-179 5-57 (977)
209 PLN02189 cellulose synthase 22.7 58 0.0013 41.9 2.6 53 122-179 33-85 (1040)
210 KOG0978 E3 ubiquitin ligase in 22.6 19 0.00041 44.3 -1.4 31 149-182 660-690 (698)
211 PF10367 Vps39_2: Vacuolar sor 22.6 57 0.0012 29.4 1.9 32 122-160 77-108 (109)
212 KOG1632 Uncharacterized PHD Zn 22.5 18 0.00039 40.9 -1.6 51 124-179 240-295 (345)
213 COG5109 Uncharacterized conser 21.5 50 0.0011 37.5 1.6 44 25-68 337-385 (396)
214 PF05605 zf-Di19: Drought indu 21.4 46 0.00099 27.6 1.0 37 24-68 2-40 (54)
215 COG1773 Rubredoxin [Energy pro 21.4 63 0.0014 28.1 1.8 11 169-179 35-45 (55)
216 KOG3842 Adaptor protein Pellin 21.2 73 0.0016 36.2 2.7 52 19-70 336-414 (429)
217 KOG1829 Uncharacterized conser 20.8 31 0.00067 41.8 -0.2 41 23-66 510-557 (580)
218 PF06906 DUF1272: Protein of u 20.5 71 0.0015 28.0 1.9 43 26-70 7-52 (57)
219 PF13832 zf-HC5HC2H_2: PHD-zin 20.2 52 0.0011 30.5 1.2 31 124-162 56-88 (110)
220 PRK14873 primosome assembly pr 20.1 75 0.0016 39.1 2.8 10 170-179 422-431 (665)
No 1
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.68 E-value=8.7e-18 Score=192.36 Aligned_cols=139 Identities=23% Similarity=0.517 Sum_probs=96.1
Q ss_pred cccccccccccccc--eeecCCCCcccHhHHHhhhccCCCCCCccCccceeeeccccccCCC-CcccCCccccCCccccc
Q 003132 24 CGRCGICMDVVIDR--GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGS-NNIDGDSLSRGEDWSIE 100 (845)
Q Consensus 24 d~~CpICLE~f~d~--~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I~~ipV~d~iGs-~~i~~~sL~~rdd~~Iq 100 (845)
...|+||+-.+.+. ....+|+|.||..||..|.+..+.||+||..|..+..+ ...+. ..++.+++...... ++
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~---eS~~~~~~vR~lP~EEs~~~-~e 198 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVL---ESTGIEANVRCLPSEESENI-LE 198 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeee---ccccccceeEecchhhhhhh-hh
Confidence 35799999988654 44567999999999999999999999999999877633 33333 33333443222110 00
Q ss_pred -cccCccCCCccccccccccccCCCCCCCCCCCCccccCCCCccccccCCCCcc-ccccccCCCCCCCCCCcccCCcCCC
Q 003132 101 -EKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLW-YHAFCVGFDPEGTCEDTWLCPRCVA 178 (845)
Q Consensus 101 -dedeslefPs~YIDee~~iClD~~~C~ICgGs~~~~dddned~mLlCDsCDra-YH~~CLgPpl~~vPegdW~CP~Cr~ 178 (845)
+.+.. ...+.++..+. ..|.||+.. +.+++||+||+|+.+ ||+|||+|++.++|.+.|||+.|..
T Consensus 199 ~~~d~~---~d~~~~~~~E~----~~C~IC~~~------DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 199 KGGDEK---QDQISGLSQEE----VKCDICTVH------DPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred hccccc---cccccCccccc----ccceeeccC------ChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 00000 01112222223 379999533 456899999999999 9999999999999999999999954
Q ss_pred C
Q 003132 179 E 179 (845)
Q Consensus 179 ~ 179 (845)
.
T Consensus 266 L 266 (1134)
T KOG0825|consen 266 L 266 (1134)
T ss_pred h
Confidence 4
No 2
>PHA02926 zinc finger-like protein; Provisional
Probab=98.86 E-value=6.7e-10 Score=114.90 Aligned_cols=64 Identities=38% Similarity=0.858 Sum_probs=51.7
Q ss_pred CCccccCccccccccccccccc--------ceeecCCCCcccHhHHHhhhcc------CCCCCCccCccceeeecccc
Q 003132 15 TENDLLNFECGRCGICMDVVID--------RGVLDCCQHWFCFACIDNWSTI------TNLCPLCQGEFQLITCVPVY 78 (845)
Q Consensus 15 ~~~DssssEd~~CpICLE~f~d--------~~iL~~CgHtFC~sCI~~Wlk~------snsCPlCR~~f~~I~~ipV~ 78 (845)
.++....+++.+|+|||+.+.+ .+.+++|+|.||..||..|... ...||+||..|.++...+++
T Consensus 161 ye~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~ 238 (242)
T PHA02926 161 YEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY 238 (242)
T ss_pred HHHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence 3555667788999999998643 2789999999999999999864 34699999999988765554
No 3
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.84 E-value=7.9e-10 Score=116.67 Aligned_cols=57 Identities=32% Similarity=0.660 Sum_probs=51.5
Q ss_pred cccccCCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 117 AVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 117 ~~iClD~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
-|+|+++..|.|||.+ +|.+++||||.||++||+|||.||+.+.|+|.|-|.-|...
T Consensus 275 rwqcieck~csicgts------enddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 275 RWQCIECKYCSICGTS------ENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred eeeeeecceeccccCc------CCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 4789999999999866 35578999999999999999999999999999999999765
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.82 E-value=2.5e-09 Score=112.17 Aligned_cols=55 Identities=38% Similarity=0.914 Sum_probs=46.4
Q ss_pred Ccccccccccccccccc-------eeecCCCCcccHhHHHhhhccCCCCCCccCccceeeec
Q 003132 21 NFECGRCGICMDVVIDR-------GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCV 75 (845)
Q Consensus 21 ssEd~~CpICLE~f~d~-------~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I~~i 75 (845)
...+..|+||++.+.+. +++++|+|.||..||..|+....+||+||..+..+...
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 34568999999987542 46778999999999999999999999999998876643
No 5
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.81 E-value=1.4e-09 Score=85.33 Aligned_cols=42 Identities=33% Similarity=0.821 Sum_probs=35.3
Q ss_pred ccccccccccc--cceeecCCCCcccHhHHHhhhccCCCCCCcc
Q 003132 25 GRCGICMDVVI--DRGVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (845)
Q Consensus 25 ~~CpICLE~f~--d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR 66 (845)
+.|+||++.+. +..+..+|+|.||..||..|++...+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999984 3456666999999999999999999999997
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.74 E-value=1.1e-08 Score=104.42 Aligned_cols=60 Identities=35% Similarity=0.795 Sum_probs=48.6
Q ss_pred cccccccccccccccceeecCCCCcccHhHHHhhhcc----------------CCCCCCccCccceeeeccccccCC
Q 003132 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI----------------TNLCPLCQGEFQLITCVPVYDTIG 82 (845)
Q Consensus 22 sEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~----------------snsCPlCR~~f~~I~~ipV~d~iG 82 (845)
..+..|+||++.+.++ +++.|+|.||..||..|... ...||+||..+.....+|+|+...
T Consensus 16 ~~~~~CpICld~~~dP-VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~ 91 (193)
T PLN03208 16 GGDFDCNICLDQVRDP-VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQ 91 (193)
T ss_pred CCccCCccCCCcCCCc-EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCC
Confidence 3568999999998885 44569999999999999642 357999999998877778887633
No 7
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.8e-08 Score=104.74 Aligned_cols=62 Identities=32% Similarity=0.789 Sum_probs=52.1
Q ss_pred cCcccccccccccccccceeecCCCCcccHhHHHhhhcc---CCCCCCccCccceeeeccccccCC
Q 003132 20 LNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI---TNLCPLCQGEFQLITCVPVYDTIG 82 (845)
Q Consensus 20 sssEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~---snsCPlCR~~f~~I~~ipV~d~iG 82 (845)
.....+.|-|||+...+ ++++.|||.||+.||.+|+.. ...||+|+..+..-..+|+|++..
T Consensus 43 ~~~~~FdCNICLd~akd-PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~ 107 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKD-PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGS 107 (230)
T ss_pred CCCCceeeeeeccccCC-CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCC
Confidence 34567899999999888 455569999999999999865 456999999999888899998744
No 8
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.57 E-value=3.3e-08 Score=86.35 Aligned_cols=43 Identities=40% Similarity=0.889 Sum_probs=35.9
Q ss_pred cccccccccccccc------------eeecCCCCcccHhHHHhhhccCCCCCCcc
Q 003132 24 CGRCGICMDVVIDR------------GVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (845)
Q Consensus 24 d~~CpICLE~f~d~------------~iL~~CgHtFC~sCI~~Wlk~snsCPlCR 66 (845)
++.|+||++.|.+. .....|+|.||..||.+|++....||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 45699999999432 45567999999999999999999999997
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.57 E-value=3e-08 Score=76.32 Aligned_cols=39 Identities=38% Similarity=0.940 Sum_probs=34.4
Q ss_pred ccccccccccceeecCCCCcccHhHHHhhhccCCCCCCc
Q 003132 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLC 65 (845)
Q Consensus 27 CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlC 65 (845)
|+||++.+.++.+..+|||.||..||..|.+...+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999999976888899999999999999888899998
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.7e-08 Score=105.15 Aligned_cols=50 Identities=30% Similarity=0.832 Sum_probs=43.2
Q ss_pred ccccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccceee
Q 003132 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (845)
Q Consensus 23 Ed~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I~ 73 (845)
-...|.|||+...+ +..++|||.||+.||..|......||+||..+....
T Consensus 238 a~~kC~LCLe~~~~-pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 238 ATRKCSLCLENRSN-PSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCceEEEecCCCC-CCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 34789999999767 567779999999999999999888999999887543
No 11
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.51 E-value=5.7e-08 Score=76.80 Aligned_cols=38 Identities=37% Similarity=0.863 Sum_probs=28.5
Q ss_pred ccccccccccceeecCCCCcccHhHHHhhhccC----CCCCCc
Q 003132 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTIT----NLCPLC 65 (845)
Q Consensus 27 CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~s----nsCPlC 65 (845)
|+||++.|.+++.+. |||+||..||..|.+.. ..||+|
T Consensus 1 CpiC~~~~~~Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999966665 99999999999986542 479998
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.48 E-value=1.1e-07 Score=71.78 Aligned_cols=43 Identities=42% Similarity=0.966 Sum_probs=37.8
Q ss_pred cccccccccccceeecCCCCcccHhHHHhhhcc-CCCCCCccCc
Q 003132 26 RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI-TNLCPLCQGE 68 (845)
Q Consensus 26 ~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~-snsCPlCR~~ 68 (845)
.|+||++.+.....+.+|+|.||..|+..|... ...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 599999998666777789999999999999887 7789999865
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.47 E-value=8.7e-08 Score=77.28 Aligned_cols=48 Identities=31% Similarity=0.672 Sum_probs=39.7
Q ss_pred ccccccccccccccceeecCCCCc-ccHhHHHhhhccCCCCCCccCccce
Q 003132 23 ECGRCGICMDVVIDRGVLDCCQHW-FCFACIDNWSTITNLCPLCQGEFQL 71 (845)
Q Consensus 23 Ed~~CpICLE~f~d~~iL~~CgHt-FC~sCI~~Wlk~snsCPlCR~~f~~ 71 (845)
++..|.||++...+ ..+.+|+|. ||..|+..|......||+||..+..
T Consensus 1 ~~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENPRD-VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSBSS-EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CcCCCccCCccCCc-eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 35789999999877 566679999 9999999999999999999988753
No 14
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.1e-07 Score=95.90 Aligned_cols=49 Identities=35% Similarity=0.714 Sum_probs=42.0
Q ss_pred ccccccccccccccce-eecCCCCcccHhHHHhhhccCCCCCCccCccce
Q 003132 23 ECGRCGICMDVVIDRG-VLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (845)
Q Consensus 23 Ed~~CpICLE~f~d~~-iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~ 71 (845)
.-..|||||+.+.... +-..|||+||..||..-++....||+|++.+..
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 3468999999998765 557899999999999999999999999976543
No 15
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2e-07 Score=102.43 Aligned_cols=46 Identities=35% Similarity=0.852 Sum_probs=39.4
Q ss_pred ccccccccccc--cceeecCCCCcccHhHHHhhhccC-CCCCCccCccc
Q 003132 25 GRCGICMDVVI--DRGVLDCCQHWFCFACIDNWSTIT-NLCPLCQGEFQ 70 (845)
Q Consensus 25 ~~CpICLE~f~--d~~iL~~CgHtFC~sCI~~Wlk~s-nsCPlCR~~f~ 70 (845)
+.|+||||.|. ++..+++|.|.||..||++|+... ..||+|+....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 69999999995 567778899999999999999775 55999998554
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.32 E-value=3.1e-07 Score=70.65 Aligned_cols=39 Identities=38% Similarity=0.933 Sum_probs=34.8
Q ss_pred ccccccccccceeecCCCCcccHhHHHhhhc--cCCCCCCc
Q 003132 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWST--ITNLCPLC 65 (845)
Q Consensus 27 CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk--~snsCPlC 65 (845)
|+||++.+.++..+.+|+|.||..||..|.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999988776888999999999999987 56679998
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.27 E-value=6.5e-07 Score=74.03 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=39.6
Q ss_pred ccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccc
Q 003132 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (845)
Q Consensus 25 ~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~ 70 (845)
..|+||++.+.+++. .+|||+||..||..|......||.|+..+.
T Consensus 2 ~~Cpi~~~~~~~Pv~-~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDPVI-LPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCCEE-CCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 579999999998654 569999999999999988889999998764
No 18
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.26 E-value=1.5e-07 Score=75.56 Aligned_cols=48 Identities=35% Similarity=0.842 Sum_probs=38.2
Q ss_pred CCCCCCCCCccccCCCCccccccCCCCccccccccCCCCC--CCCCCcccCCcCCC
Q 003132 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPE--GTCEDTWLCPRCVA 178 (845)
Q Consensus 125 ~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~--~vPegdW~CP~Cr~ 178 (845)
.|.+|++. +..+.||.|+.|+.|||..|++++.. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~~------~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQS------DDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSS------CTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCc------CCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 37889642 34467999999999999999999965 44556999999964
No 19
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.14 E-value=1.1e-06 Score=98.21 Aligned_cols=50 Identities=36% Similarity=0.584 Sum_probs=42.4
Q ss_pred CcccccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccce
Q 003132 21 NFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (845)
Q Consensus 21 ssEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~ 71 (845)
-.....|+||++.|.+++ +.+|+|.||..||..|+.....||+|+..+..
T Consensus 23 Le~~l~C~IC~d~~~~Pv-itpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPV-LTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCcc-CCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 345679999999998854 56799999999999999887789999988753
No 20
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.14 E-value=7.4e-07 Score=95.18 Aligned_cols=55 Identities=29% Similarity=0.662 Sum_probs=46.0
Q ss_pred cccccCCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCC-cCCCC
Q 003132 117 AVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCP-RCVAE 179 (845)
Q Consensus 117 ~~iClD~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP-~Cr~~ 179 (845)
.|.|.++..|.||++.. -++.++|||.||++||++|+|+.. +|.|.|.|. .|+..
T Consensus 308 ~W~C~~C~lC~IC~~P~------~E~E~~FCD~CDRG~HT~CVGL~~--lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 308 FWKCSSCELCRICLGPV------IESEHLFCDVCDRGPHTLCVGLQD--LPRGEWICDMRCREA 363 (381)
T ss_pred chhhcccHhhhccCCcc------cchheeccccccCCCCcccccccc--ccCccchhhhHHHHh
Confidence 46899999999997553 345699999999999999999875 899999997 46554
No 21
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.2e-06 Score=94.39 Aligned_cols=49 Identities=35% Similarity=0.774 Sum_probs=41.9
Q ss_pred cccccccccccccc--cceeecCCCCcccHhHHHhhhc-cCCCCCCccCccc
Q 003132 22 FECGRCGICMDVVI--DRGVLDCCQHWFCFACIDNWST-ITNLCPLCQGEFQ 70 (845)
Q Consensus 22 sEd~~CpICLE~f~--d~~iL~~CgHtFC~sCI~~Wlk-~snsCPlCR~~f~ 70 (845)
..+..|+|||+.|. ++.+.++|.|.||..|+.+|.. .++.||+||..+.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 34578999999984 5678888999999999999987 6899999998754
No 22
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.10 E-value=1.9e-06 Score=78.23 Aligned_cols=48 Identities=29% Similarity=0.684 Sum_probs=38.9
Q ss_pred ccccccccccccc------------ceeecCCCCcccHhHHHhhhcc---CCCCCCccCccce
Q 003132 24 CGRCGICMDVVID------------RGVLDCCQHWFCFACIDNWSTI---TNLCPLCQGEFQL 71 (845)
Q Consensus 24 d~~CpICLE~f~d------------~~iL~~CgHtFC~sCI~~Wlk~---snsCPlCR~~f~~ 71 (845)
++.|+||+..|.. +.+...|+|.||..||.+|+.. +..||+||+.+.+
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 7899999998852 1345569999999999999865 4689999988754
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.07 E-value=2.6e-06 Score=67.42 Aligned_cols=42 Identities=31% Similarity=0.820 Sum_probs=36.4
Q ss_pred ccccccccc--ccceeecCCCCcccHhHHHhhhccCCCCCCccC
Q 003132 26 RCGICMDVV--IDRGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (845)
Q Consensus 26 ~CpICLE~f--~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~ 67 (845)
.|+||++.+ ..+..+++|+|+||..||..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999999 345889999999999999998866778999984
No 24
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.6e-06 Score=93.68 Aligned_cols=54 Identities=24% Similarity=0.555 Sum_probs=42.9
Q ss_pred Ccccccccccccccccc------------eeecCCCCcccHhHHHhhhccCCCCCCccCccceeee
Q 003132 21 NFECGRCGICMDVVIDR------------GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITC 74 (845)
Q Consensus 21 ssEd~~CpICLE~f~d~------------~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I~~ 74 (845)
...+..|.|||+.+..+ +.-.+|||.||..|+..|.++.+.||+||.++-+-..
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~~ 349 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQS 349 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccccccC
Confidence 34567999999985322 2445699999999999999999999999988654443
No 25
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.03 E-value=3.3e-06 Score=61.42 Aligned_cols=38 Identities=42% Similarity=1.046 Sum_probs=32.1
Q ss_pred ccccccccccceeecCCCCcccHhHHHhhhc-cCCCCCCc
Q 003132 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWST-ITNLCPLC 65 (845)
Q Consensus 27 CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk-~snsCPlC 65 (845)
|+||++.... ....+|+|.||..|+..|.. ....||.|
T Consensus 1 C~iC~~~~~~-~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD-PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC-cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8999999655 55566999999999999987 56779987
No 26
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.2e-06 Score=83.65 Aligned_cols=46 Identities=33% Similarity=0.589 Sum_probs=39.4
Q ss_pred CcccccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccC
Q 003132 21 NFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (845)
Q Consensus 21 ssEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~ 67 (845)
..+...|+||++.|.++ .+.+|+|+||..||..+......||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP-VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC-ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 34568999999999987 77779999999999997666678999993
No 28
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.93 E-value=3.1e-06 Score=92.28 Aligned_cols=46 Identities=30% Similarity=0.694 Sum_probs=40.6
Q ss_pred ccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccce
Q 003132 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (845)
Q Consensus 25 ~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~ 71 (845)
..|.||.+.|.. +++.+|+|+||--||+.++..+..||.|+..|+-
T Consensus 24 LRC~IC~eyf~i-p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 24 LRCGICFEYFNI-PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHhHHHHHhcC-ceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 589999999877 5556699999999999999999999999988763
No 29
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.90 E-value=5.9e-06 Score=74.27 Aligned_cols=48 Identities=29% Similarity=0.670 Sum_probs=39.6
Q ss_pred ccccccccccccc---------------eeecCCCCcccHhHHHhhhccCCCCCCccCcccee
Q 003132 25 GRCGICMDVVIDR---------------GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72 (845)
Q Consensus 25 ~~CpICLE~f~d~---------------~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I 72 (845)
+.|+||+..+.+. +.-..|.|.||..||.+|+.+++.||+||+.+.+.
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 6899999887542 23334999999999999999999999999988753
No 30
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.89 E-value=6.9e-06 Score=100.56 Aligned_cols=104 Identities=20% Similarity=0.291 Sum_probs=72.0
Q ss_pred CCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCCCCCCCcccccccccCCCCCCCC
Q 003132 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVPQNSSIDLTQSTNDQSGPENA 201 (845)
Q Consensus 122 D~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~~~~~~s~s~~Qr~~~~~~~~~~ 201 (845)
.+..|.||.+. +-.+.+++++||.|+.++|++|+|.+. +|+|.|+|..|.-.-.+. -.+..|...++
T Consensus 218 ~D~~C~iC~~~----~~~n~n~ivfCD~Cnl~VHq~Cygi~~--ipeg~WlCr~Cl~s~~~~-------v~c~~cp~~~g 284 (1051)
T KOG0955|consen 218 EDAVCCICLDG----ECQNSNVIVFCDGCNLAVHQECYGIPF--IPEGQWLCRRCLQSPQRP-------VRCLLCPSKGG 284 (1051)
T ss_pred CCccceeeccc----ccCCCceEEEcCCCcchhhhhccCCCC--CCCCcEeehhhccCcCcc-------cceEeccCCCC
Confidence 56789999644 334667899999999999999999553 899999999998772111 23455667777
Q ss_pred CCCCccccccCccc--------ccccccCCCcceeeccccCCCCC
Q 003132 202 NGDHLAESLFPRKV--------SVSVADAGETAVVVSMIGEEPNE 238 (845)
Q Consensus 202 ~~r~~~e~~~s~ev--------SVsvAD~gETa~V~SmVg~~~~~ 238 (845)
.+.+..+..+.+.+ .|....--|....++.++.-+|.
T Consensus 285 AFkqt~dgrw~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRwk 329 (1051)
T KOG0955|consen 285 AFKQTDDGRWAHVVCAIWIPEVSFANTVFLEPIDSIENIPPARWK 329 (1051)
T ss_pred cceeccCCceeeeehhhcccccccccchhhccccchhcCcHhhhh
Confidence 77776666655543 33333334555666666666663
No 31
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=7.2e-06 Score=94.86 Aligned_cols=48 Identities=23% Similarity=0.530 Sum_probs=41.0
Q ss_pred Ccccccccccccccccc----eeecCCCCcccHhHHHhhhccCCCCCCccCc
Q 003132 21 NFECGRCGICMDVVIDR----GVLDCCQHWFCFACIDNWSTITNLCPLCQGE 68 (845)
Q Consensus 21 ssEd~~CpICLE~f~d~----~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~ 68 (845)
...+..|+||+|.+... ....+|+|.||..|+..|+++.++||.||..
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhh
Confidence 34478999999998763 4555699999999999999999999999983
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.77 E-value=1e-05 Score=86.97 Aligned_cols=48 Identities=27% Similarity=0.522 Sum_probs=42.2
Q ss_pred ccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccceee
Q 003132 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (845)
Q Consensus 25 ~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I~ 73 (845)
+.|-||-+.|.. +.+.+|+|+||.-||..++..+..||+||..+....
T Consensus 26 lrC~IC~~~i~i-p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esr 73 (391)
T COG5432 26 LRCRICDCRISI-PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESR 73 (391)
T ss_pred HHhhhhhheeec-ceecccccchhHHHHHHHhcCCCCCccccccHHhhh
Confidence 689999998876 567779999999999999999999999999876543
No 33
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.1e-05 Score=91.91 Aligned_cols=49 Identities=29% Similarity=0.617 Sum_probs=38.1
Q ss_pred cccccccccccccceeecCCCCcccHhHHHhhhcc-----CCCCCCccCccceee
Q 003132 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI-----TNLCPLCQGEFQLIT 73 (845)
Q Consensus 24 d~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~-----snsCPlCR~~f~~I~ 73 (845)
+..|||||+...- +..+.|||.||..||-+++.. -..||+|+..++.-.
T Consensus 186 ~~~CPICL~~~~~-p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSV-PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCc-ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 7799999998655 445559999999999985432 357999998887633
No 34
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.1e-05 Score=85.78 Aligned_cols=49 Identities=24% Similarity=0.650 Sum_probs=39.9
Q ss_pred cccccccccccccccceeecCCCCcccHhHHHh-hhccCCC-CCCccCccce
Q 003132 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDN-WSTITNL-CPLCQGEFQL 71 (845)
Q Consensus 22 sEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~-Wlk~sns-CPlCR~~f~~ 71 (845)
..+..|+||++.... +...+|+|.||..||-. |-....- ||+||+..+.
T Consensus 213 ~~d~kC~lC~e~~~~-ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEV-PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCC-cccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 447789999998766 45556999999999999 9876554 9999987764
No 35
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.75 E-value=7.6e-06 Score=94.83 Aligned_cols=50 Identities=32% Similarity=0.748 Sum_probs=42.9
Q ss_pred CCCCCCCCCCccccCCCCccccccCCCCccccccccCCC--CCCCCCCcccCCcCCCC
Q 003132 124 DGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFD--PEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 124 ~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPp--l~~vPegdW~CP~Cr~~ 179 (845)
++|..|++...+ ..+++||+|++.||++||.|| .+.+|.|.|+|+.|...
T Consensus 254 ~fCsaCn~~~~F------~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 254 DFCSACNGSGLF------NDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHhCCcccc------ccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 389999876433 347999999999999999999 56889999999999877
No 36
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.2e-05 Score=88.80 Aligned_cols=52 Identities=35% Similarity=0.963 Sum_probs=42.9
Q ss_pred cccccccccccccccc-------eeecCCCCcccHhHHHhhh--cc-----CCCCCCccCccceee
Q 003132 22 FECGRCGICMDVVIDR-------GVLDCCQHWFCFACIDNWS--TI-----TNLCPLCQGEFQLIT 73 (845)
Q Consensus 22 sEd~~CpICLE~f~d~-------~iL~~CgHtFC~sCI~~Wl--k~-----snsCPlCR~~f~~I~ 73 (845)
..+.+|+|||+.+... +++++|.|.||..||..|. .+ ...||.||....++.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 5688999999998653 4678899999999999998 33 568999998876654
No 37
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.73 E-value=1.2e-05 Score=85.96 Aligned_cols=36 Identities=44% Similarity=1.161 Sum_probs=32.6
Q ss_pred ccccccCC--CC-ccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 142 DTSIACDS--CD-LWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 142 d~mLlCDs--CD-raYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
+.|+-||. |+ .|||+.|+|+.. .|.|.||||.|...
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVGL~~--~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVGLKT--KPKGKWYCPRCKAE 268 (274)
T ss_pred ccccccCCCCCCcceEEEecccccc--CCCCcccchhhhhh
Confidence 46999997 99 899999999984 78899999999877
No 38
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.68 E-value=1.9e-05 Score=91.99 Aligned_cols=56 Identities=21% Similarity=0.580 Sum_probs=44.6
Q ss_pred ccccCCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 118 VICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 118 ~iClD~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
|.|.++..|..|+.. +++...++|+.||..||.||..|+...++.+.|+|+.|...
T Consensus 63 WrC~~crvCe~c~~~------gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c 118 (694)
T KOG4443|consen 63 WRCPSCRVCEACGTT------GDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRC 118 (694)
T ss_pred cccCCceeeeecccc------CCcccccccccccccccccccCCccccccCcccccHHHHhh
Confidence 455555667777522 34556799999999999999999999999999999887544
No 39
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.68 E-value=2.3e-05 Score=68.24 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=37.1
Q ss_pred ccccccccccccccceeecCCCCcccHhHHHhhhcc-CCCCCCccCccce
Q 003132 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEFQL 71 (845)
Q Consensus 23 Ed~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~-snsCPlCR~~f~~ 71 (845)
+.+.|+||++.+.+++++. |||+|++.||..|+.. ...||+|+..+..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 4579999999999976665 8899999999999988 8899999877654
No 40
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.67 E-value=1.9e-05 Score=63.34 Aligned_cols=36 Identities=31% Similarity=0.711 Sum_probs=20.2
Q ss_pred cccccccccc---ceeecCCCCcccHhHHHhhhcc----CCCCC
Q 003132 27 CGICMDVVID---RGVLDCCQHWFCFACIDNWSTI----TNLCP 63 (845)
Q Consensus 27 CpICLE~f~d---~~iL~~CgHtFC~sCI~~Wlk~----snsCP 63 (845)
|+||++ +.+ +++.++|||+||..||..++.. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 754 3454559999999999998864 34576
No 41
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.65 E-value=1.4e-05 Score=90.33 Aligned_cols=103 Identities=15% Similarity=0.332 Sum_probs=72.3
Q ss_pred CCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCCCCCCCcccccccccCCCCCCCCC
Q 003132 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVPQNSSIDLTQSTNDQSGPENAN 202 (845)
Q Consensus 123 ~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~~~~~~s~s~~Qr~~~~~~~~~~~ 202 (845)
++.|.+|.+. +.+|.+.+++||+|+...|..|+|++. +|+|.|+|..|.-. ..-.+.+..|+..++.
T Consensus 193 d~~C~~c~~t----~~eN~naiVfCdgC~i~VHq~CYGI~f--~peG~WlCrkCi~~-------~~~i~~C~fCps~dGa 259 (669)
T COG5141 193 DDICTKCTST----HNENSNAIVFCDGCEICVHQSCYGIQF--LPEGFWLCRKCIYG-------EYQIRCCSFCPSSDGA 259 (669)
T ss_pred hhhhHhcccc----ccCCcceEEEecCcchhhhhhccccee--cCcchhhhhhhccc-------ccceeEEEeccCCCCc
Confidence 4678888543 345777899999999999999999986 89999999999866 1223556778888887
Q ss_pred CCCccccccCc--------ccccccccCCCcceeeccccCCCCC
Q 003132 203 GDHLAESLFPR--------KVSVSVADAGETAVVVSMIGEEPNE 238 (845)
Q Consensus 203 ~r~~~e~~~s~--------evSVsvAD~gETa~V~SmVg~~~~~ 238 (845)
..+...+.+.+ +++|...-..+...-+..|..-+|.
T Consensus 260 FkqT~dgrW~H~iCA~~~pelsF~~l~~~dpI~~i~sVs~srwk 303 (669)
T COG5141 260 FKQTSDGRWGHVICAMFNPELSFGHLLSKDPIDNIASVSSSRWK 303 (669)
T ss_pred eeeccCCchHhHhHHHhcchhccccccccchhhhhcccchhhHh
Confidence 77766655554 4455444444444444445555553
No 42
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=2.1e-05 Score=73.73 Aligned_cols=50 Identities=32% Similarity=0.779 Sum_probs=39.4
Q ss_pred cccccccccccccccc----------------eeecCCCCcccHhHHHhhhccCCCCCCccCccce
Q 003132 22 FECGRCGICMDVVIDR----------------GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (845)
Q Consensus 22 sEd~~CpICLE~f~d~----------------~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~ 71 (845)
..-+.|+||+..+.+. +.=..|.|.||+.||.+|+++++.||+|.+.-.+
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 3456899999987542 1122499999999999999999999999876543
No 43
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=2.6e-05 Score=92.24 Aligned_cols=52 Identities=27% Similarity=0.584 Sum_probs=41.2
Q ss_pred cccccccccccccceeecCCCCcccHhHHHhhh-ccCCCCCCccCccceeeecc
Q 003132 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWS-TITNLCPLCQGEFQLITCVP 76 (845)
Q Consensus 24 d~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wl-k~snsCPlCR~~f~~I~~ip 76 (845)
-..|+.|-..+.+ +++..|+|.||..||..-. .+...||.|+..|..-...+
T Consensus 643 ~LkCs~Cn~R~Kd-~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD-AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred ceeCCCccCchhh-HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 3589999988777 6666799999999999854 45678999999997544333
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.50 E-value=3.7e-05 Score=66.74 Aligned_cols=45 Identities=33% Similarity=0.785 Sum_probs=24.4
Q ss_pred cccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccc
Q 003132 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (845)
Q Consensus 24 d~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~ 70 (845)
-..|++|.+.+..++.+..|+|.||..||..-... .||+|+.+..
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHH
Confidence 36899999999998889999999999999885543 4999987643
No 45
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.49 E-value=7.5e-05 Score=81.48 Aligned_cols=50 Identities=20% Similarity=0.499 Sum_probs=37.8
Q ss_pred ccccccccccc-ccc---eeecCCCCcccHhHHHh-hhccCCCCCCccCccceee
Q 003132 24 CGRCGICMDVV-IDR---GVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLIT 73 (845)
Q Consensus 24 d~~CpICLE~f-~d~---~iL~~CgHtFC~sCI~~-Wlk~snsCPlCR~~f~~I~ 73 (845)
+..||||+... ..+ ..+..|||.||..||.. |......||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 46899999953 222 23447999999999999 6666778999998776543
No 46
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=7.9e-05 Score=82.11 Aligned_cols=65 Identities=26% Similarity=0.531 Sum_probs=50.1
Q ss_pred hhhcccCCCCCccccCcccccccccccccccceeecCCCCc-ccHhHHHhhhccCCCCCCccCcccee
Q 003132 6 EEQTFQVDNTENDLLNFECGRCGICMDVVIDRGVLDCCQHW-FCFACIDNWSTITNLCPLCQGEFQLI 72 (845)
Q Consensus 6 ~eEt~s~D~~~~DssssEd~~CpICLE~f~d~~iL~~CgHt-FC~sCI~~Wlk~snsCPlCR~~f~~I 72 (845)
+.|+.++.++..+ .+.....|.|||...++ ..+.+|.|. .|..|.+...-+++.||+||+.+...
T Consensus 273 Gien~~v~~~~~~-~~~~gkeCVIClse~rd-t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 273 GIENSTVEGTDAD-ESESGKECVICLSESRD-TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred ccccCCCCCCccc-cccCCCeeEEEecCCcc-eEEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 4444555554444 55668899999999888 555569999 99999998888899999999887643
No 47
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.44 E-value=9.6e-05 Score=84.16 Aligned_cols=50 Identities=24% Similarity=0.578 Sum_probs=40.6
Q ss_pred CCCCCCCCccccCCCCccccccCCCCccccccccCCCC----CCCCCCcccCCcCCCC
Q 003132 126 CKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDP----EGTCEDTWLCPRCVAE 179 (845)
Q Consensus 126 C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl----~~vPegdW~CP~Cr~~ 179 (845)
|.+|... ....++.||.|++|..|||..|..|+. -..+...|||-.|...
T Consensus 171 c~vC~~g----~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 171 CSVCYCG----GPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeecC----CcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 7788532 334566899999999999999999983 3457889999999988
No 48
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=1.8e-05 Score=86.95 Aligned_cols=47 Identities=30% Similarity=0.638 Sum_probs=40.2
Q ss_pred cccccccccccccceeecCCCCcccHhHHHhhh-ccCCCCCCccCccc
Q 003132 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWS-TITNLCPLCQGEFQ 70 (845)
Q Consensus 24 d~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wl-k~snsCPlCR~~f~ 70 (845)
+..|+|||+.+..-.+...|.|.||+.||..-+ ...+.||.||+.+.
T Consensus 43 ~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 578999999998777788899999999998754 45789999998754
No 49
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.41 E-value=0.00011 Score=72.82 Aligned_cols=27 Identities=30% Similarity=0.714 Sum_probs=26.0
Q ss_pred cccccccCCCCCCCCCCcccCCcCCCC
Q 003132 153 WYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 153 aYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
+||++||.||+..+|+|+|+||.|...
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~ 27 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVE 27 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCC
Confidence 699999999999999999999999987
No 50
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.38 E-value=4.5e-05 Score=89.71 Aligned_cols=106 Identities=19% Similarity=0.315 Sum_probs=78.3
Q ss_pred CCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCCCCCCCcccccccccCCCCCCCCC
Q 003132 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVPQNSSIDLTQSTNDQSGPENAN 202 (845)
Q Consensus 123 ~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~~~~~~s~s~~Qr~~~~~~~~~~~ 202 (845)
+-.|.+|...+ .+..+.|+|||.|+...|..|+|+-. +|++.|.|..|.-. +++.+..|+...+.
T Consensus 271 dviCDvCrspD----~e~~neMVfCd~Cn~cVHqaCyGIle--~p~gpWlCr~Calg---------~~ppCvLCPkkGGa 335 (893)
T KOG0954|consen 271 DVICDVCRSPD----SEEANEMVFCDKCNICVHQACYGILE--VPEGPWLCRTCALG---------IEPPCVLCPKKGGA 335 (893)
T ss_pred cceeceecCCC----ccccceeEEeccchhHHHHhhhceee--cCCCCeeehhcccc---------CCCCeeeccccCCc
Confidence 45789995443 23345699999999999999999975 89999999999988 66677777777765
Q ss_pred CCCccc---------cccCcccccccccCCCcceeeccccCCCCCCCCcc
Q 003132 203 GDHLAE---------SLFPRKVSVSVADAGETAVVVSMIGEEPNENFQSM 243 (845)
Q Consensus 203 ~r~~~e---------~~~s~evSVsvAD~gETa~V~SmVg~~~~~~~~~~ 243 (845)
-++... +.|--+|++.-.+..|.-+-.+-+...+|..+|.-
T Consensus 336 mK~~~sgT~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRwslvC~L 385 (893)
T KOG0954|consen 336 MKPTKSGTKWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNL 385 (893)
T ss_pred ccccCCCCeeeEeeeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHH
Confidence 443322 33444666666677787777888888888766654
No 51
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.29 E-value=9.8e-05 Score=78.40 Aligned_cols=38 Identities=34% Similarity=1.027 Sum_probs=31.8
Q ss_pred CCccccccC--CCCc-cccccccCCCCCCCCCCcccCCcCCCC
Q 003132 140 NLDTSIACD--SCDL-WYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 140 ned~mLlCD--sCDr-aYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
..+.|+.|| .|.+ |||+.|+|+.. .|.|.|||+.|...
T Consensus 230 SyGqMVaCDn~nCkrEWFH~~CVGLk~--pPKG~WYC~eCk~~ 270 (271)
T COG5034 230 SYGQMVACDNANCKREWFHLECVGLKE--PPKGKWYCPECKKA 270 (271)
T ss_pred ccccceecCCCCCchhheeccccccCC--CCCCcEeCHHhHhc
Confidence 345699999 5876 99999999874 79999999999753
No 52
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.25 E-value=0.00012 Score=85.67 Aligned_cols=100 Identities=14% Similarity=0.321 Sum_probs=67.9
Q ss_pred CCCCCCCCCCccccCCC-CccccccC--CCCccccccccCCCCCCCCCCcccCCcCCCCCCCCCcccccccccCCCCCCC
Q 003132 124 DGCKIRSGSMVAEESSN-LDTSIACD--SCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVPQNSSIDLTQSTNDQSGPEN 200 (845)
Q Consensus 124 ~~C~ICgGs~~~~dddn-ed~mLlCD--sCDraYH~~CLgPpl~~vPegdW~CP~Cr~~~~~~~s~s~~Qr~~~~~~~~~ 200 (845)
+.|.||. + +.++ ++.++||| .|..+.|..|+|+-. +|.|.|||..|..- ++... --+..|+-.+
T Consensus 6 GGCCVCS--D---ErGWaeNPLVYCDG~nCsVAVHQaCYGIvq--VPtGpWfCrKCesq-eraar-----vrCeLCP~kd 72 (900)
T KOG0956|consen 6 GGCCVCS--D---ERGWAENPLVYCDGHNCSVAVHQACYGIVQ--VPTGPWFCRKCESQ-ERAAR-----VRCELCPHKD 72 (900)
T ss_pred cceeeec--C---cCCCccCceeeecCCCceeeeehhcceeEe--cCCCchhhhhhhhh-hhhcc-----ceeecccCcc
Confidence 5688994 2 2223 34699999 599999999999985 89999999999765 22221 2355677777
Q ss_pred CCCCCccccccCcccccccccCCCc-------ceeeccccCCC
Q 003132 201 ANGDHLAESLFPRKVSVSVADAGET-------AVVVSMIGEEP 236 (845)
Q Consensus 201 ~~~r~~~e~~~s~evSVsvAD~gET-------a~V~SmVg~~~ 236 (845)
+..+...+..|.+-|+.+--.+-.. .+|.+.|..++
T Consensus 73 GALKkTDn~GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~dR 115 (900)
T KOG0956|consen 73 GALKKTDNGGWAHVVCALYIPEVRFGNVHTMEPIILQDVPHDR 115 (900)
T ss_pred cceecccCCCceEEEEEeeccceeecccccccceeeccCchhh
Confidence 7777778888877654432222211 45566677666
No 53
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=9.1e-05 Score=66.34 Aligned_cols=48 Identities=31% Similarity=0.670 Sum_probs=37.1
Q ss_pred ccccccccccccc------------ceeecCCCCcccHhHHHhhhcc---CCCCCCccCccce
Q 003132 24 CGRCGICMDVVID------------RGVLDCCQHWFCFACIDNWSTI---TNLCPLCQGEFQL 71 (845)
Q Consensus 24 d~~CpICLE~f~d------------~~iL~~CgHtFC~sCI~~Wlk~---snsCPlCR~~f~~ 71 (845)
+++|+||+-.|.. +.++.-|.|.||..||.+|... ...||+||+.+.+
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 4599999988852 1233359999999999999854 4579999998764
No 54
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.10 E-value=0.00016 Score=86.84 Aligned_cols=50 Identities=28% Similarity=0.666 Sum_probs=40.1
Q ss_pred cccccccccccccc--c----ceeecCCCCcccHhHHHhhhcc--CCCCCCccCccce
Q 003132 22 FECGRCGICMDVVI--D----RGVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQL 71 (845)
Q Consensus 22 sEd~~CpICLE~f~--d----~~iL~~CgHtFC~sCI~~Wlk~--snsCPlCR~~f~~ 71 (845)
+..++|+||+..+. + -..+.+|.|.||..|+-+|.+. +++||+||.++.+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 34578999999874 2 1467779999999999999865 6789999987754
No 55
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.05 E-value=0.00013 Score=92.48 Aligned_cols=51 Identities=25% Similarity=0.620 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 123 ~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
...|.+|.... ..+.|++|+.|+.+||++|+.|.+..+|.++|+||.|+..
T Consensus 1108 ~~~c~~cr~k~------~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1108 NALCKVCRRKK------QDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred hhhhhhhhhcc------cchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 46899995432 3357999999999999999999999999999999999998
No 56
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00033 Score=79.79 Aligned_cols=50 Identities=28% Similarity=0.632 Sum_probs=39.5
Q ss_pred Ccccccccccccccccc----------------eeecCCCCcccHhHHHhhhc-cCCCCCCccCccc
Q 003132 21 NFECGRCGICMDVVIDR----------------GVLDCCQHWFCFACIDNWST-ITNLCPLCQGEFQ 70 (845)
Q Consensus 21 ssEd~~CpICLE~f~d~----------------~iL~~CgHtFC~sCI~~Wlk-~snsCPlCR~~f~ 70 (845)
......|+|||..+.-. .++++|.|.||..|+.+|.. .+..||.||..+.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 34456899999986310 45678999999999999998 5668999997753
No 57
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.92 E-value=0.00017 Score=78.87 Aligned_cols=49 Identities=27% Similarity=0.611 Sum_probs=43.9
Q ss_pred cccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCcccee
Q 003132 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72 (845)
Q Consensus 24 d~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I 72 (845)
..+|.+|...|.+.-++.-|.|+||..||..++...+.||.|...++..
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 4689999999999888888999999999999999999999999876643
No 58
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.92 E-value=0.00029 Score=83.84 Aligned_cols=47 Identities=28% Similarity=0.735 Sum_probs=40.1
Q ss_pred CCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 124 DGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 124 ~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
..|.+|.+. ..+++||.|..+||.+|+++++...|.++|.|++|...
T Consensus 48 e~c~ic~~~---------g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 48 EACRICADG---------GELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred hhhhhhcCC---------CcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 468899533 35799999999999999999999999999999999544
No 59
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00027 Score=59.89 Aligned_cols=48 Identities=29% Similarity=0.778 Sum_probs=38.3
Q ss_pred cccccccccccccceeecCCCCc-ccHhHHHh-hhccCCCCCCccCcccee
Q 003132 24 CGRCGICMDVVIDRGVLDCCQHW-FCFACIDN-WSTITNLCPLCQGEFQLI 72 (845)
Q Consensus 24 d~~CpICLE~f~d~~iL~~CgHt-FC~sCI~~-Wlk~snsCPlCR~~f~~I 72 (845)
+++|.||+|.-.+ .++-.|+|. .|+.|-.+ |......||+||+.+..+
T Consensus 7 ~dECTICye~pvd-sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 7 SDECTICYEHPVD-SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDV 56 (62)
T ss_pred ccceeeeccCcch-HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHH
Confidence 4799999998666 456669999 99999554 666788999999887643
No 60
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.58 E-value=0.001 Score=74.81 Aligned_cols=56 Identities=30% Similarity=0.564 Sum_probs=47.1
Q ss_pred CcccccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccceeeecc
Q 003132 21 NFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVP 76 (845)
Q Consensus 21 ssEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I~~ip 76 (845)
-.++..|+||+..+.++.....|+|.||..||..|......||.|+........++
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 45668999999999886555679999999999999999999999998877655443
No 61
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0021 Score=69.23 Aligned_cols=56 Identities=21% Similarity=0.506 Sum_probs=44.5
Q ss_pred cccCcccccccccccccccceeecCCCCcccHhHHHhhhcc--CCCCCCccCccceee
Q 003132 18 DLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQLIT 73 (845)
Q Consensus 18 DssssEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~--snsCPlCR~~f~~I~ 73 (845)
-+....+.+|++|.+.-..+-++.+|+|.||..||..-... ...||.|......++
T Consensus 233 ss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 233 SSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred cccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence 34455678999999987777888889999999999874432 468999998877554
No 62
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.40 E-value=0.0018 Score=73.43 Aligned_cols=47 Identities=23% Similarity=0.540 Sum_probs=36.2
Q ss_pred ccCcccccccccccccccc---eeecCCCCcccHhHHHhhhccCCCCCCccC
Q 003132 19 LLNFECGRCGICMDVVIDR---GVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (845)
Q Consensus 19 ssssEd~~CpICLE~f~d~---~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~ 67 (845)
..-.+--+||||||.+.+- .....|.|+||..|+..|... +||+||.
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~--scpvcR~ 219 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS--SCPVCRY 219 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC--cChhhhh
Confidence 3345566999999987432 345569999999999999754 6999983
No 63
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0019 Score=72.96 Aligned_cols=49 Identities=29% Similarity=0.597 Sum_probs=42.5
Q ss_pred cccccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccce
Q 003132 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (845)
Q Consensus 22 sEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~ 71 (845)
..++.|.||+..+..++.. +|||+||..||..-+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~t-pcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVT-PCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccc-cccccccHHHHHHHhccCCCCccccccccc
Confidence 5678999999999886666 799999999999977778889999988764
No 64
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.30 E-value=0.00092 Score=58.41 Aligned_cols=47 Identities=28% Similarity=0.679 Sum_probs=22.7
Q ss_pred cccccccccccc-cc----eee--cCCCCcccHhHHHhhhcc----C-------CCCCCccCccc
Q 003132 24 CGRCGICMDVVI-DR----GVL--DCCQHWFCFACIDNWSTI----T-------NLCPLCQGEFQ 70 (845)
Q Consensus 24 d~~CpICLE~f~-d~----~iL--~~CgHtFC~sCI~~Wlk~----s-------nsCPlCR~~f~ 70 (845)
+..|+||+..+. +. .+. ..|++.||..||..|+.. . ..||.|+..+.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999999764 21 333 369999999999999742 1 14999998764
No 65
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0019 Score=69.40 Aligned_cols=49 Identities=24% Similarity=0.577 Sum_probs=37.7
Q ss_pred ccccccccccccccc---------eeecCCCCcccHhHHHhhh--ccCCCCCCccCccce
Q 003132 23 ECGRCGICMDVVIDR---------GVLDCCQHWFCFACIDNWS--TITNLCPLCQGEFQL 71 (845)
Q Consensus 23 Ed~~CpICLE~f~d~---------~iL~~CgHtFC~sCI~~Wl--k~snsCPlCR~~f~~ 71 (845)
++..|+||-..+..- ..-.+|+|+||..||+-|. ...+.||.|+..+..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 356899999877421 2344599999999999996 457899999977653
No 66
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.06 E-value=0.0038 Score=52.89 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=30.9
Q ss_pred cccccccccccccccceeecCCCCcccHhHHHhhhcc--CCCCCC
Q 003132 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI--TNLCPL 64 (845)
Q Consensus 22 sEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~--snsCPl 64 (845)
.....|||.+..|.+++.-..|+|+|....|..|..+ ...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3457999999999999888899999999999999933 557998
No 67
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0026 Score=71.20 Aligned_cols=44 Identities=32% Similarity=0.779 Sum_probs=33.5
Q ss_pred ccccccccccc---cceeecCCCCcccHhHHHhhhccC---CCCCCccCc
Q 003132 25 GRCGICMDVVI---DRGVLDCCQHWFCFACIDNWSTIT---NLCPLCQGE 68 (845)
Q Consensus 25 ~~CpICLE~f~---d~~iL~~CgHtFC~sCI~~Wlk~s---nsCPlCR~~ 68 (845)
..|.||-+.+. +.+-+..|||+||..|+.+|..+. ..||+|+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeec
Confidence 47999955442 235566699999999999999873 369999943
No 68
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.003 Score=68.89 Aligned_cols=47 Identities=26% Similarity=0.496 Sum_probs=36.8
Q ss_pred cccccccccccccceeecCCCCcccHhHHHhhhcc-CCCCCCccCccce
Q 003132 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEFQL 71 (845)
Q Consensus 24 d~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~-snsCPlCR~~f~~ 71 (845)
...|+||+....-+ +.+.|.|.||+-||.--... ...|++||.++..
T Consensus 7 ~~eC~IC~nt~n~P-v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNCP-VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCcC-ccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 46899999987665 55569999999999874443 4459999998764
No 69
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.80 E-value=0.0013 Score=51.04 Aligned_cols=34 Identities=32% Similarity=0.880 Sum_probs=19.6
Q ss_pred ccccccCCCCccccccccCCCCCCCCCC-cccCCcCC
Q 003132 142 DTSIACDSCDLWYHAFCVGFDPEGTCED-TWLCPRCV 177 (845)
Q Consensus 142 d~mLlCDsCDraYH~~CLgPpl~~vPeg-dW~CP~Cr 177 (845)
+.|+.|+.|.-..|..|+|.... +.+ .|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~--~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEV--PDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS----SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccC--CCCCcEECCcCC
Confidence 35899999999999999999863 334 79999884
No 70
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.78 E-value=0.0062 Score=50.03 Aligned_cols=41 Identities=22% Similarity=0.694 Sum_probs=30.0
Q ss_pred cccccccccc-cceeecCCC-----CcccHhHHHhhhcc--CCCCCCcc
Q 003132 26 RCGICMDVVI-DRGVLDCCQ-----HWFCFACIDNWSTI--TNLCPLCQ 66 (845)
Q Consensus 26 ~CpICLE~f~-d~~iL~~Cg-----HtFC~sCI~~Wlk~--snsCPlCR 66 (845)
.|.||++... +.....+|. |.||..|+.+|... ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998221 224455674 88999999999854 55899995
No 71
>PHA03096 p28-like protein; Provisional
Probab=95.69 E-value=0.0043 Score=67.44 Aligned_cols=43 Identities=30% Similarity=0.621 Sum_probs=33.1
Q ss_pred ccccccccccccc-------eeecCCCCcccHhHHHhhhcc---CCCCCCccC
Q 003132 25 GRCGICMDVVIDR-------GVLDCCQHWFCFACIDNWSTI---TNLCPLCQG 67 (845)
Q Consensus 25 ~~CpICLE~f~d~-------~iL~~CgHtFC~sCI~~Wlk~---snsCPlCR~ 67 (845)
..|.|||+.+... ++++.|.|.||..||..|... ...||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6899999987532 789999999999999999753 234555543
No 72
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.0079 Score=65.51 Aligned_cols=49 Identities=22% Similarity=0.404 Sum_probs=40.2
Q ss_pred cccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccceee
Q 003132 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (845)
Q Consensus 24 d~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I~ 73 (845)
.+.|-||...|.++ +...|+|+||..|...-.+....|++|.+..+.+.
T Consensus 241 Pf~c~icr~~f~~p-Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP-VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred Cccccccccccccc-hhhcCCceeehhhhccccccCCcceeccccccccc
Confidence 46799999999885 55569999999998877777789999998766443
No 73
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.24 E-value=0.0067 Score=68.19 Aligned_cols=52 Identities=25% Similarity=0.657 Sum_probs=41.9
Q ss_pred CcccccccccccccccceeecCCCCcccHhHHHhhhcc--CCCCCCccCccceee
Q 003132 21 NFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQLIT 73 (845)
Q Consensus 21 ssEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~--snsCPlCR~~f~~I~ 73 (845)
.+-=.-|-||-+.-.+ +.+.+|||..|..|+..|... .+.||.||.++....
T Consensus 366 gsTFeLCKICaendKd-vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 366 GSTFELCKICAENDKD-VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred cchHHHHHHhhccCCC-cccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 3344579999998666 778889999999999999743 688999998876544
No 74
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.0071 Score=67.15 Aligned_cols=51 Identities=27% Similarity=0.565 Sum_probs=43.3
Q ss_pred ccCcccccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccc
Q 003132 19 LLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (845)
Q Consensus 19 ssssEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~ 70 (845)
.-++++..|+||+..-.. ++..+|+|.-|..||.+.+.+...|=.|+..+.
T Consensus 417 lp~sEd~lCpICyA~pi~-Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 417 LPDSEDNLCPICYAGPIN-AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CCCcccccCcceecccch-hhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 445788999999997555 566779999999999999999999999987654
No 75
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.14 E-value=0.0069 Score=69.95 Aligned_cols=49 Identities=31% Similarity=0.685 Sum_probs=38.9
Q ss_pred CcccccccccccccccceeecCCCCcccHhHHHhhhc-----cCCCCCCccCccc
Q 003132 21 NFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWST-----ITNLCPLCQGEFQ 70 (845)
Q Consensus 21 ssEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk-----~snsCPlCR~~f~ 70 (845)
+.....|.+|-+.-.+ .+...|.|.||.-||..+.. ....||.|...+.
T Consensus 533 nk~~~~C~lc~d~aed-~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAED-YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCChhhh-hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 3456789999998766 66777999999999988863 2468999987654
No 76
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.0086 Score=67.56 Aligned_cols=49 Identities=35% Similarity=0.678 Sum_probs=38.6
Q ss_pred ccccccccccccc----cceeecCCCCcccHhHHHhhhcc--CCCCCCccCccce
Q 003132 23 ECGRCGICMDVVI----DRGVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQL 71 (845)
Q Consensus 23 Ed~~CpICLE~f~----d~~iL~~CgHtFC~sCI~~Wlk~--snsCPlCR~~f~~ 71 (845)
...+||||++.+. .....+.|+|.|-..||+.|+.. ...||+|...-..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 3568999999874 23567779999999999999853 4579999876444
No 77
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.80 E-value=0.01 Score=61.75 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=37.7
Q ss_pred cccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccc
Q 003132 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (845)
Q Consensus 24 d~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~ 70 (845)
.+.|.||...|..+ +...|+|.||..|.-.-.+....|-+|.+..+
T Consensus 196 PF~C~iCKkdy~sp-vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESP-VVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccch-hhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 56999999999884 55569999999997776666778999987654
No 78
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=94.76 E-value=0.011 Score=67.94 Aligned_cols=49 Identities=27% Similarity=0.587 Sum_probs=40.0
Q ss_pred CCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCC----cccCCcCCCC
Q 003132 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCED----TWLCPRCVAE 179 (845)
Q Consensus 125 ~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPeg----dW~CP~Cr~~ 179 (845)
.|-||..+. +...++.||.|...||.-||.||+...|.. -|.|-.|...
T Consensus 546 sCgiCkks~------dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~ 598 (707)
T KOG0957|consen 546 SCGICKKST------DQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKN 598 (707)
T ss_pred eeeeeccch------hhHHHhhcchhhceeeccccCCccccCcccccCcceeecccccc
Confidence 588996543 345789999999999999999999888865 5999999433
No 79
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.54 E-value=0.017 Score=63.11 Aligned_cols=44 Identities=27% Similarity=0.631 Sum_probs=38.7
Q ss_pred ccccccccccccceeecCCCCcccHhHHHhhh-ccCCCCCCccCc
Q 003132 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWS-TITNLCPLCQGE 68 (845)
Q Consensus 25 ~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wl-k~snsCPlCR~~ 68 (845)
+.|+.|...+.+++...+|+|.||..||..-+ .....||.|...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rk 319 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRK 319 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccc
Confidence 78999999999988889999999999999754 567889999764
No 80
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.47 E-value=0.07 Score=57.02 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=42.4
Q ss_pred Cccccccccccccccc---ceeecCCCCcccHhHHHhhhccCCCCCCccCccceeee
Q 003132 21 NFECGRCGICMDVVID---RGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITC 74 (845)
Q Consensus 21 ssEd~~CpICLE~f~d---~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I~~ 74 (845)
......|||....|.. .+.+-+|||+|+..+|..-. ....||+|...|.....
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCE
Confidence 4556799999998853 37788999999999999863 45679999999885443
No 81
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.04 E-value=0.058 Score=59.77 Aligned_cols=47 Identities=21% Similarity=0.496 Sum_probs=40.8
Q ss_pred ccccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCcc
Q 003132 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEF 69 (845)
Q Consensus 23 Ed~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f 69 (845)
....||||+....++..+..-|.+||..||-.+......||+=..+.
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 45689999999888888887899999999999999999999876554
No 82
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.024 Score=61.84 Aligned_cols=43 Identities=35% Similarity=0.670 Sum_probs=34.4
Q ss_pred ccccccccccccccceeecCCCCc-ccHhHHHhhhccCCCCCCccCccc
Q 003132 23 ECGRCGICMDVVIDRGVLDCCQHW-FCFACIDNWSTITNLCPLCQGEFQ 70 (845)
Q Consensus 23 Ed~~CpICLE~f~d~~iL~~CgHt-FC~sCI~~Wlk~snsCPlCR~~f~ 70 (845)
...-|.|||+...+ .+.+.|||. -|..|.. +-+.||+||+.+.
T Consensus 299 ~~~LC~ICmDaP~D-CvfLeCGHmVtCt~CGk----rm~eCPICRqyi~ 342 (350)
T KOG4275|consen 299 TRRLCAICMDAPRD-CVFLECGHMVTCTKCGK----RMNECPICRQYIV 342 (350)
T ss_pred HHHHHHHHhcCCcc-eEEeecCcEEeehhhcc----ccccCchHHHHHH
Confidence 36789999999888 666679998 8999964 3458999997654
No 83
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=92.13 E-value=0.16 Score=51.51 Aligned_cols=52 Identities=19% Similarity=0.486 Sum_probs=37.4
Q ss_pred cccccccccccccccceeecCCCC---cccHhHHHhhhcc--CCCCCCccCccceee
Q 003132 22 FECGRCGICMDVVIDRGVLDCCQH---WFCFACIDNWSTI--TNLCPLCQGEFQLIT 73 (845)
Q Consensus 22 sEd~~CpICLE~f~d~~iL~~CgH---tFC~sCI~~Wlk~--snsCPlCR~~f~~I~ 73 (845)
..+..|-||++.-.+...+-.|.+ .-|.+|++.|... ..+|++|+..|....
T Consensus 6 ~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 6 LMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred CCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 446799999998543223333555 3599999999854 668999999987654
No 84
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=91.43 E-value=0.17 Score=51.74 Aligned_cols=51 Identities=24% Similarity=0.568 Sum_probs=36.2
Q ss_pred CCCCCCCCccccCCCCccccccCCCCccccccccCCCCC------CCCCC--cccCCcCCCC
Q 003132 126 CKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPE------GTCED--TWLCPRCVAE 179 (845)
Q Consensus 126 C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~------~vPeg--dW~CP~Cr~~ 179 (845)
|.+|+.. +++.+.+.||+|.+|...||..|||+... .+.++ --.|..|...
T Consensus 2 C~~C~~~---g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 2 CDTCGYE---GDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred cccccCC---CCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 7788532 23345668999999999999999999842 12223 3478888766
No 85
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.32 E-value=0.067 Score=60.43 Aligned_cols=45 Identities=27% Similarity=0.480 Sum_probs=36.5
Q ss_pred ccccccccccccc---ceeecCCCCcccHhHHHhhhcc--CCCCCCccCc
Q 003132 24 CGRCGICMDVVID---RGVLDCCQHWFCFACIDNWSTI--TNLCPLCQGE 68 (845)
Q Consensus 24 d~~CpICLE~f~d---~~iL~~CgHtFC~sCI~~Wlk~--snsCPlCR~~ 68 (845)
+..|..|.+.+.- .....+|.|.||..|+..++.+ ..+||.||.-
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 5789999998853 2566779999999999998754 5689999943
No 86
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.44 E-value=0.21 Score=53.79 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=43.4
Q ss_pred cccccccccccccccc---eeecCCCCcccHhHHHhhhccCCCCCCccCccce
Q 003132 22 FECGRCGICMDVVIDR---GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (845)
Q Consensus 22 sEd~~CpICLE~f~d~---~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~ 71 (845)
+....||||.+.+.+. +.+.+|+|+||..|..........||+|...+.-
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcc
Confidence 3567899999999753 6888999999999999999999999999887653
No 87
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=90.08 E-value=0.14 Score=62.34 Aligned_cols=48 Identities=27% Similarity=0.556 Sum_probs=36.7
Q ss_pred ccccccccccccccc--c-eeecCCCCcccHhHHHhhhcc-------CCCCCCccCcc
Q 003132 22 FECGRCGICMDVVID--R-GVLDCCQHWFCFACIDNWSTI-------TNLCPLCQGEF 69 (845)
Q Consensus 22 sEd~~CpICLE~f~d--~-~iL~~CgHtFC~sCI~~Wlk~-------snsCPlCR~~f 69 (845)
..-.+|.||++.+.. + -...+|-|+||+.||..|+.. .++||.|+...
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 345689999998842 2 235569999999999999853 56899998543
No 88
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=90.05 E-value=0.23 Score=41.40 Aligned_cols=43 Identities=19% Similarity=0.447 Sum_probs=21.6
Q ss_pred cccccccccc---ceeecCCCCcccHhHHHhhhc-cCCCCCCccCcc
Q 003132 27 CGICMDVVID---RGVLDCCQHWFCFACIDNWST-ITNLCPLCQGEF 69 (845)
Q Consensus 27 CpICLE~f~d---~~iL~~CgHtFC~sCI~~Wlk-~snsCPlCR~~f 69 (845)
|++|.+.+.. ...+=.|++.+|+.|...-.. ....||-||..+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899998732 134556999999999887665 477899999875
No 89
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=89.99 E-value=0.15 Score=56.79 Aligned_cols=51 Identities=22% Similarity=0.480 Sum_probs=36.1
Q ss_pred cCcccccccccccccc--cc-eeecCCCCcccHhHHHhhhcc-CCCCCCccCccc
Q 003132 20 LNFECGRCGICMDVVI--DR-GVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEFQ 70 (845)
Q Consensus 20 sssEd~~CpICLE~f~--d~-~iL~~CgHtFC~sCI~~Wlk~-snsCPlCR~~f~ 70 (845)
+..+++.||.|++.+. ++ -.+-+||...|..|-..-... ..+||-||..+.
T Consensus 10 sedeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 10 SEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 3445677999999763 33 345569999999996554333 568999998764
No 90
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.97 E-value=0.082 Score=58.09 Aligned_cols=33 Identities=27% Similarity=0.726 Sum_probs=27.0
Q ss_pred cccccccccccccc--eeecCCCCcccHhHHHhhh
Q 003132 24 CGRCGICMDVVIDR--GVLDCCQHWFCFACIDNWS 56 (845)
Q Consensus 24 d~~CpICLE~f~d~--~iL~~CgHtFC~sCI~~Wl 56 (845)
...|.|||-.|.+. .+.+.|-|.||+.|+..++
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl 149 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYL 149 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHH
Confidence 35899999998653 5677899999999988765
No 91
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.23 E-value=0.19 Score=53.72 Aligned_cols=46 Identities=33% Similarity=0.841 Sum_probs=32.5
Q ss_pred ccccccccc-ccceeecCCCCcccHhHHHhhhccCCCCCCccCccceee
Q 003132 26 RCGICMDVV-IDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (845)
Q Consensus 26 ~CpICLE~f-~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I~ 73 (845)
.|--|.-.- .++-.++.|.|+||..|...-.. ..||+|+..+..+.
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--~~C~lCkk~ir~i~ 51 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--DVCPLCKKSIRIIQ 51 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCCc--cccccccceeeeee
Confidence 455555432 45578999999999999865322 28999998866554
No 92
>PHA02862 5L protein; Provisional
Probab=89.07 E-value=0.28 Score=49.29 Aligned_cols=48 Identities=25% Similarity=0.632 Sum_probs=34.6
Q ss_pred cccccccccccccceeecCC---CCcccHhHHHhhhcc--CCCCCCccCccce
Q 003132 24 CGRCGICMDVVIDRGVLDCC---QHWFCFACIDNWSTI--TNLCPLCQGEFQL 71 (845)
Q Consensus 24 d~~CpICLE~f~d~~iL~~C---gHtFC~sCI~~Wlk~--snsCPlCR~~f~~ 71 (845)
+..|-||++.-.+...+-.| ...-|..|+.+|... ...||+|+.+|..
T Consensus 2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 36899999986443222223 234899999999854 5679999998864
No 93
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=88.96 E-value=0.089 Score=65.48 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=37.6
Q ss_pred CCCCCCCCCCccccCCCCccccccCC-CCccccc-cccC--CCCCCCCCCcccCCcCCCC
Q 003132 124 DGCKIRSGSMVAEESSNLDTSIACDS-CDLWYHA-FCVG--FDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 124 ~~C~ICgGs~~~~dddned~mLlCDs-CDraYH~-~CLg--Ppl~~vPegdW~CP~Cr~~ 179 (845)
.+|-||+ ..+++++|++ |...||. .|++ .....++++-|+|+.|-..
T Consensus 429 rrl~Ie~---------~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~r 479 (1414)
T KOG1473|consen 429 RRLRIEG---------MDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIR 479 (1414)
T ss_pred eeeEEec---------CCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHH
Confidence 3577883 2256899998 9999999 9999 5566789999999999554
No 94
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.76 E-value=0.19 Score=57.20 Aligned_cols=45 Identities=27% Similarity=0.511 Sum_probs=33.8
Q ss_pred cccccccccccc--cceeecCCCCcccHhHHHhhhcc--------CCCCCCccCc
Q 003132 24 CGRCGICMDVVI--DRGVLDCCQHWFCFACIDNWSTI--------TNLCPLCQGE 68 (845)
Q Consensus 24 d~~CpICLE~f~--d~~iL~~CgHtFC~sCI~~Wlk~--------snsCPlCR~~ 68 (845)
-..|.||++... ......+|+|+||..|+..+... ...||.|.-.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 357999999863 34677789999999999988642 3468777644
No 95
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.66 E-value=0.12 Score=65.24 Aligned_cols=50 Identities=26% Similarity=0.644 Sum_probs=42.7
Q ss_pred ccCcccccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCc
Q 003132 19 LLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGE 68 (845)
Q Consensus 19 ssssEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~ 68 (845)
..-.....|.||++.+.+.+.+..|+|.||..|+..|...+..||.|+..
T Consensus 1148 ~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred HHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 34455679999999998666677799999999999999999999999843
No 96
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=88.15 E-value=0.45 Score=48.39 Aligned_cols=52 Identities=33% Similarity=0.633 Sum_probs=34.0
Q ss_pred ccccccccccccccceeecC-----------CCCc-ccHhHHHhhhcc-------------------------------C
Q 003132 23 ECGRCGICMDVVIDRGVLDC-----------CQHW-FCFACIDNWSTI-------------------------------T 59 (845)
Q Consensus 23 Ed~~CpICLE~f~d~~iL~~-----------CgHt-FC~sCI~~Wlk~-------------------------------s 59 (845)
++..||||||.-.+.+.|.. |... -|-.|++++.+. .
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 46789999998777443331 3333 345688876421 2
Q ss_pred CCCCCccCccceeee
Q 003132 60 NLCPLCQGEFQLITC 74 (845)
Q Consensus 60 nsCPlCR~~f~~I~~ 74 (845)
..||+||..+..|..
T Consensus 81 L~CPLCRG~V~GWtv 95 (162)
T PF07800_consen 81 LACPLCRGEVKGWTV 95 (162)
T ss_pred ccCccccCceeceEE
Confidence 359999999887764
No 97
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.92 E-value=0.25 Score=55.46 Aligned_cols=46 Identities=26% Similarity=0.565 Sum_probs=33.7
Q ss_pred cccccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccce
Q 003132 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (845)
Q Consensus 22 sEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~ 71 (845)
....-|.||++...+ ....+|||+-| |+.-. +.-..||+||..+..
T Consensus 303 ~~p~lcVVcl~e~~~-~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS-AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccc-eeeecCCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 456789999999888 45555999977 76543 333459999987653
No 98
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.84 E-value=0.45 Score=53.34 Aligned_cols=59 Identities=25% Similarity=0.467 Sum_probs=43.9
Q ss_pred CCCCccccCcccccccccccccccceeecCCCCcccHhHHHhh--hccCCCCCCccCcccee
Q 003132 13 DNTENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNW--STITNLCPLCQGEFQLI 72 (845)
Q Consensus 13 D~~~~DssssEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~W--lk~snsCPlCR~~f~~I 72 (845)
.....|..+.+...|-||-+.+.- ..+.+|+|..|-.|.-.. +.....||+||.+...+
T Consensus 50 ttsSaddtDEen~~C~ICA~~~TY-s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 50 TTSSADDTDEENMNCQICAGSTTY-SARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred ccccccccccccceeEEecCCceE-EEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 334555566677899999998755 556679999999997664 34567899999876543
No 99
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.32 E-value=0.34 Score=51.98 Aligned_cols=45 Identities=24% Similarity=0.513 Sum_probs=35.6
Q ss_pred cccccccccccc-----ceeecCCCCcccHhHHHhhhcc-CCCCCCccCcc
Q 003132 25 GRCGICMDVVID-----RGVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEF 69 (845)
Q Consensus 25 ~~CpICLE~f~d-----~~iL~~CgHtFC~sCI~~Wlk~-snsCPlCR~~f 69 (845)
..|-||-+.|.. .+..+.|+|+||..|+..-... ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 579999999853 2556669999999999886654 56799999775
No 100
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=86.91 E-value=0.34 Score=60.65 Aligned_cols=48 Identities=21% Similarity=0.456 Sum_probs=41.1
Q ss_pred CCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 123 ~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
++.|.+|... ..+++|..|++.||..|+.+|...+|...|.|.-|..-
T Consensus 344 ddhcrf~~d~---------~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~h 391 (1414)
T KOG1473|consen 344 DDHCRFCHDL---------GDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIH 391 (1414)
T ss_pred cccccccCcc---------cceeecccCCceEEeeecCCccccCCCccchhhhhhhh
Confidence 4679999532 34799999999999999999999999999999999743
No 101
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=86.71 E-value=0.26 Score=54.58 Aligned_cols=46 Identities=30% Similarity=0.695 Sum_probs=32.5
Q ss_pred cccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccceee
Q 003132 26 RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (845)
Q Consensus 26 ~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I~ 73 (845)
.|--|--.+...+.+.+|.|+||++|... .....||.|...+..|.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRIE 137 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHHHHH
Confidence 35555555555567778999999999764 33568999987766543
No 102
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=86.26 E-value=0.58 Score=37.72 Aligned_cols=39 Identities=21% Similarity=0.554 Sum_probs=23.1
Q ss_pred ccccccccccceeec--CCCCcccHhHHHhhhccCC--CCCCc
Q 003132 27 CGICMDVVIDRGVLD--CCQHWFCFACIDNWSTITN--LCPLC 65 (845)
Q Consensus 27 CpICLE~f~d~~iL~--~CgHtFC~sCI~~Wlk~sn--sCPlC 65 (845)
|.+|.+.+....... .|.-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 788999887655555 5999999999999876533 69988
No 103
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=85.23 E-value=0.48 Score=60.51 Aligned_cols=54 Identities=20% Similarity=0.401 Sum_probs=38.6
Q ss_pred cCccccccccccccc--ccceeecCCCCcccHhHHHhhhcc----------CCCCCCccCccceee
Q 003132 20 LNFECGRCGICMDVV--IDRGVLDCCQHWFCFACIDNWSTI----------TNLCPLCQGEFQLIT 73 (845)
Q Consensus 20 sssEd~~CpICLE~f--~d~~iL~~CgHtFC~sCI~~Wlk~----------snsCPlCR~~f~~I~ 73 (845)
...-++.|-||+..- .-+++-..|+|.||+.|.+.-+++ -.+||+|...+..+.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence 345578999999753 234566669999999997754332 236999998877655
No 104
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=85.13 E-value=0.41 Score=57.94 Aligned_cols=44 Identities=32% Similarity=0.785 Sum_probs=35.3
Q ss_pred ccccccccccccceeecCCCCcccHhHHHhhhcc--CCCCCCccCccc
Q 003132 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQ 70 (845)
Q Consensus 25 ~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~--snsCPlCR~~f~ 70 (845)
..|.||++ .+...+..|+|.||..|+...... ...||.||..+.
T Consensus 455 ~~c~ic~~--~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD--LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc--cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 68999999 455788889999999999985543 336999997654
No 105
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=84.96 E-value=0.4 Score=55.81 Aligned_cols=78 Identities=17% Similarity=0.303 Sum_probs=50.1
Q ss_pred CCCCCCCCCccccCCCCccccccCCCCccccccccCCCC-CCCC-------CCcccCCcCCCCCCCCCcccccccccCCC
Q 003132 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDP-EGTC-------EDTWLCPRCVAEVPQNSSIDLTQSTNDQS 196 (845)
Q Consensus 125 ~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl-~~vP-------egdW~CP~Cr~~~~~~~s~s~~Qr~~~~~ 196 (845)
.|.||-|.- ..+.+.++.||.|+...|--|+|... ..+| ...|||.-|+.++- -..+..|
T Consensus 121 iCcVClg~r----s~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs--------~P~CElC 188 (707)
T KOG0957|consen 121 ICCVCLGQR----SVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVS--------LPHCELC 188 (707)
T ss_pred EEEEeecCc----cccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCC--------CCccccC
Confidence 688996652 23455689999999999999999771 1122 25899999998821 1345566
Q ss_pred CCCCCCCCCccccccCcc
Q 003132 197 GPENANGDHLAESLFPRK 214 (845)
Q Consensus 197 ~~~~~~~r~~~e~~~s~e 214 (845)
+...+-.+...-..|.+-
T Consensus 189 Pn~~GifKetDigrWvH~ 206 (707)
T KOG0957|consen 189 PNRFGIFKETDIGRWVHA 206 (707)
T ss_pred CCcCCcccccchhhHHHH
Confidence 665554444333344333
No 106
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=84.75 E-value=0.64 Score=55.90 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=27.0
Q ss_pred hcccccchhheeccccccccCCCCCccchhcccCC
Q 003132 667 CQETNPILSRLYLADTSVFPRKDNIMPLSALKATD 701 (845)
Q Consensus 667 ~~~~~~ilsrlylad~sv~pr~~~~~pl~~~~~~~ 701 (845)
-|.-|.-||-.+-+|++-.||-+.+-+-.++..-.
T Consensus 680 l~~ln~qlS~~~~~~va~~~~~~~~~lq~ais~ds 714 (900)
T KOG0956|consen 680 LQALNSQLSVPFPLDVAKRQRSDGLLLQQAIAHDS 714 (900)
T ss_pred HhhcchhhcCccccccccCCCCCcccccccccccc
Confidence 45778888888888999999999887766665443
No 107
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=84.64 E-value=0.48 Score=40.61 Aligned_cols=45 Identities=29% Similarity=0.613 Sum_probs=32.9
Q ss_pred cccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccce
Q 003132 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (845)
Q Consensus 24 d~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~ 71 (845)
...|-.|...-. ...+.+|+|..|..|..- .+-+-||.|...|..
T Consensus 7 ~~~~~~~~~~~~-~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGT-KGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccc-ccccccccceeeccccCh--hhccCCCCCCCcccC
Confidence 346777776533 366777999999999765 344579999988753
No 108
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.60 E-value=0.74 Score=49.22 Aligned_cols=47 Identities=21% Similarity=0.538 Sum_probs=35.1
Q ss_pred cccccccccccccc-eeecCCCCcccHhHHHhhhcc--------CCCCCCccCccc
Q 003132 24 CGRCGICMDVVIDR-GVLDCCQHWFCFACIDNWSTI--------TNLCPLCQGEFQ 70 (845)
Q Consensus 24 d~~CpICLE~f~d~-~iL~~CgHtFC~sCI~~Wlk~--------snsCPlCR~~f~ 70 (845)
.-.|..|--.+... .+-..|-|.||+.|+..|... ...||.|..++.
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 45688888777432 344459999999999999743 357999988754
No 109
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=83.46 E-value=0.59 Score=46.33 Aligned_cols=36 Identities=25% Similarity=0.508 Sum_probs=27.4
Q ss_pred ccccccccccccc--ceeecCCC------CcccHhHHHhhhccC
Q 003132 24 CGRCGICMDVVID--RGVLDCCQ------HWFCFACIDNWSTIT 59 (845)
Q Consensus 24 d~~CpICLE~f~d--~~iL~~Cg------HtFC~sCI~~Wlk~s 59 (845)
..+|.||++.+.+ .++..+|+ |.||..|+..|....
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 4689999999866 55555675 559999999995433
No 110
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.37 E-value=1 Score=53.71 Aligned_cols=50 Identities=20% Similarity=0.322 Sum_probs=37.0
Q ss_pred cccccccccc--cccceeecCCCCcccHhHHHhhhc------cCCCCCCccCccceee
Q 003132 24 CGRCGICMDV--VIDRGVLDCCQHWFCFACIDNWST------ITNLCPLCQGEFQLIT 73 (845)
Q Consensus 24 d~~CpICLE~--f~d~~iL~~CgHtFC~sCI~~Wlk------~snsCPlCR~~f~~I~ 73 (845)
...|.-|-.. |.+...+..|...||+.||++=+. +...||.|........
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~in~ 310 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSVINP 310 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeeeeccc
Confidence 3489999764 445567888999999999998643 3567999986654433
No 111
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=82.46 E-value=0.59 Score=42.20 Aligned_cols=31 Identities=26% Similarity=0.577 Sum_probs=24.9
Q ss_pred ccccccccccccccc-eeecCCCCcccHhHHH
Q 003132 23 ECGRCGICMDVVIDR-GVLDCCQHWFCFACID 53 (845)
Q Consensus 23 Ed~~CpICLE~f~d~-~iL~~CgHtFC~sCI~ 53 (845)
.+..|++|...+... ...-+|+|.||..|+.
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 356899999998643 4566799999999975
No 112
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.76 E-value=0.7 Score=56.71 Aligned_cols=44 Identities=23% Similarity=0.517 Sum_probs=36.9
Q ss_pred cccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccc
Q 003132 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (845)
Q Consensus 24 d~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~ 70 (845)
.-.|.+|--.+.-|.+--.|+|.||..|+. .....||.|+....
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELR 883 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhhh
Confidence 358999999988777777899999999998 55678999987544
No 113
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=79.88 E-value=1.7 Score=49.17 Aligned_cols=53 Identities=23% Similarity=0.614 Sum_probs=34.9
Q ss_pred ccCcccccccccccccccceeec----------------C-----CCCcccHhHHHhhhcc-------------CCCCCC
Q 003132 19 LLNFECGRCGICMDVVIDRGVLD----------------C-----CQHWFCFACIDNWSTI-------------TNLCPL 64 (845)
Q Consensus 19 ssssEd~~CpICLE~f~d~~iL~----------------~-----CgHtFC~sCI~~Wlk~-------------snsCPl 64 (845)
...++.+.|--||..-.+..... . |.-..|.+|+-+|... +-.||.
T Consensus 266 ~~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPt 345 (358)
T PF10272_consen 266 ESGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPT 345 (358)
T ss_pred CCccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCC
Confidence 34567789999998643321111 2 3344688999999622 346999
Q ss_pred ccCccce
Q 003132 65 CQGEFQL 71 (845)
Q Consensus 65 CR~~f~~ 71 (845)
||+.|-.
T Consensus 346 CRa~FCi 352 (358)
T PF10272_consen 346 CRAKFCI 352 (358)
T ss_pred Cccccee
Confidence 9999863
No 114
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=79.70 E-value=1.2 Score=51.58 Aligned_cols=52 Identities=29% Similarity=0.498 Sum_probs=34.0
Q ss_pred CCCCCCCCCccccCCCCccccccCCCCccccccccCC--------CCCC---CCCCcccCCcCCCC
Q 003132 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGF--------DPEG---TCEDTWLCPRCVAE 179 (845)
Q Consensus 125 ~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgP--------pl~~---vPegdW~CP~Cr~~ 179 (845)
.|.+|..-+ ...+.-..+.||.|++|.|..|.-- .... ..++.++|..|...
T Consensus 130 ~C~iC~kfD---~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 130 MCCICSKFD---DNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred CccccCCcc---cCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCCh
Confidence 366675432 1223334699999999999999422 2211 24669999999877
No 115
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=79.42 E-value=0.55 Score=56.18 Aligned_cols=54 Identities=24% Similarity=0.505 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCC-CCCcccCCcCCCC
Q 003132 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGT-CEDTWLCPRCVAE 179 (845)
Q Consensus 122 D~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~v-PegdW~CP~Cr~~ 179 (845)
-+-.|.+|+... .+.++.|+.|..|..-||.+|+....... -.+-|.|+.|+.-
T Consensus 17 ~~~mc~l~~s~G----~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvC 71 (694)
T KOG4443|consen 17 VCLMCPLCGSSG----KGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVC 71 (694)
T ss_pred hhhhhhhhcccc----ccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceee
Confidence 345788886542 23556799999999999999999653211 1234999999876
No 116
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=78.22 E-value=1.1 Score=38.39 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=26.3
Q ss_pred CCCCCCCCCCCccccCCCCccccccCCCCccccccccCCC
Q 003132 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFD 162 (845)
Q Consensus 123 ~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPp 162 (845)
+..|.+|+..... .+-++.|..|...||..|....
T Consensus 5 ~~~C~~Cg~~~~~-----~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 5 GCKCPVCGKKFKD-----GDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred CccChhhCCcccC-----CCCEEECCCCCCcccHHHHhhC
Confidence 4579999765421 2347999999999999998654
No 117
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=76.33 E-value=0.65 Score=53.33 Aligned_cols=44 Identities=16% Similarity=0.455 Sum_probs=26.6
Q ss_pred CcccccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccC
Q 003132 21 NFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (845)
Q Consensus 21 ssEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~ 67 (845)
....++|..|...+.-...-..=+-.||..|.+.-++. |-.|..
T Consensus 299 Hv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlek---C~~Cg~ 342 (468)
T KOG1701|consen 299 HVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEK---CNKCGE 342 (468)
T ss_pred cccceehHhhhhhhccccccccCCcccchHHHHHHHHH---Hhhhhh
Confidence 34567888888877644333333456777776654443 555543
No 118
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=76.26 E-value=1.2 Score=51.37 Aligned_cols=34 Identities=29% Similarity=0.511 Sum_probs=27.9
Q ss_pred cccccccccccccccceeecCCCCcccHhHHHhhh
Q 003132 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWS 56 (845)
Q Consensus 22 sEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wl 56 (845)
.++..|+||...|.++.++ +|+|..|..|...-+
T Consensus 2 eeelkc~vc~~f~~epiil-~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIIL-PCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCceEe-ecccHHHHHHHHhhc
Confidence 4678999999998885544 599999999987654
No 119
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=75.51 E-value=2.2 Score=53.22 Aligned_cols=51 Identities=29% Similarity=0.668 Sum_probs=41.3
Q ss_pred CCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 122 D~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
+...|..|.... .+..+ .|++|+..||.+|..+++..++.+.|.|+.|...
T Consensus 154 ~~~~~~~~~k~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGK------EEKLL-LCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCC------Cccce-ecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 455688885331 22344 9999999999999999999999999999999766
No 120
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=75.07 E-value=1.9 Score=52.49 Aligned_cols=37 Identities=0% Similarity=-0.179 Sum_probs=33.5
Q ss_pred cccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 143 TSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 143 ~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
..+.|++|++.||.+|+.|....++...|.|..|...
T Consensus 188 k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~~ 224 (696)
T KOG0383|consen 188 KLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKGA 224 (696)
T ss_pred cccccccchhhhhheeccccccccchhhhhhcccccc
Confidence 3688889999999999999999999999999999776
No 121
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=74.21 E-value=1.9 Score=47.69 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=34.2
Q ss_pred ccccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCcccee
Q 003132 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72 (845)
Q Consensus 23 Ed~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I 72 (845)
+=..||||.+.+..+..--.=||.-|..|-. +..+.||.||..+..+
T Consensus 47 ~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQCDNGHLACSSCRT---KVSNKCPTCRLPIGNI 93 (299)
T ss_pred hhccCchhhccCcccceecCCCcEehhhhhh---hhcccCCccccccccH
Confidence 3468999999987643222237889988864 5678899999888754
No 122
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=73.37 E-value=1.9 Score=35.35 Aligned_cols=39 Identities=21% Similarity=0.750 Sum_probs=24.9
Q ss_pred ccccccccccc-eeecCC--CC---cccHhHHHhhhc--cCCCCCCc
Q 003132 27 CGICMDVVIDR-GVLDCC--QH---WFCFACIDNWST--ITNLCPLC 65 (845)
Q Consensus 27 CpICLE~f~d~-~iL~~C--gH---tFC~sCI~~Wlk--~snsCPlC 65 (845)
|-||++.-.+. ..+.+| .- ..|..|+..|.. ....|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 77999976432 344445 34 589999999986 45679987
No 123
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=72.88 E-value=2.4 Score=46.77 Aligned_cols=45 Identities=22% Similarity=0.541 Sum_probs=34.7
Q ss_pred ccccccccc-ccc---eeecCCCCcccHhHHHhhh-ccCCCCCCccCccc
Q 003132 26 RCGICMDVV-IDR---GVLDCCQHWFCFACIDNWS-TITNLCPLCQGEFQ 70 (845)
Q Consensus 26 ~CpICLE~f-~d~---~iL~~CgHtFC~sCI~~Wl-k~snsCPlCR~~f~ 70 (845)
.||+|.... .++ ..+..|+|..|..|...-. .+...||.|...+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 699999864 333 4566899999999999854 56778999976554
No 124
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=72.43 E-value=2.3 Score=42.44 Aligned_cols=47 Identities=32% Similarity=0.911 Sum_probs=36.2
Q ss_pred ccccccccccccceeec---CCCCcccHhHHHh-hh--ccCCCCCCccCccce
Q 003132 25 GRCGICMDVVIDRGVLD---CCQHWFCFACIDN-WS--TITNLCPLCQGEFQL 71 (845)
Q Consensus 25 ~~CpICLE~f~d~~iL~---~CgHtFC~sCI~~-Wl--k~snsCPlCR~~f~~ 71 (845)
-+|-||.|...+...+. .||...|..|--. |- .....||.|+..|..
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 47999999877654443 4999999998655 64 446789999998864
No 125
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=72.36 E-value=2.1 Score=45.57 Aligned_cols=46 Identities=22% Similarity=0.584 Sum_probs=39.7
Q ss_pred ccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccc
Q 003132 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (845)
Q Consensus 25 ~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~ 70 (845)
..|-+|...+.....+.+|+-.+|..|+..+......||.|..-+.
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence 5799999988776778889999999999999999999999965443
No 126
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=71.57 E-value=1.8 Score=52.93 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=41.0
Q ss_pred CCccccCccccccccccccccc------ceeecCCCCcccHhHHHhhhcc------CCCCCCccCccceeee
Q 003132 15 TENDLLNFECGRCGICMDVVID------RGVLDCCQHWFCFACIDNWSTI------TNLCPLCQGEFQLITC 74 (845)
Q Consensus 15 ~~~DssssEd~~CpICLE~f~d------~~iL~~CgHtFC~sCI~~Wlk~------snsCPlCR~~f~~I~~ 74 (845)
.+.|........|.||.-.+.+ ...+..|.|.||..||..|+.+ .-.|++|..-|..|.+
T Consensus 87 sE~DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR 158 (1134)
T KOG0825|consen 87 DEVDEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR 158 (1134)
T ss_pred cccCcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh
Confidence 3444444455666666655543 1445569999999999999854 4468999887777664
No 127
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.94 E-value=2.5 Score=48.28 Aligned_cols=47 Identities=17% Similarity=0.283 Sum_probs=37.0
Q ss_pred cccccccccccc--cceeecCCCCcccHhHHHhhhcc---CCCCCCccCccc
Q 003132 24 CGRCGICMDVVI--DRGVLDCCQHWFCFACIDNWSTI---TNLCPLCQGEFQ 70 (845)
Q Consensus 24 d~~CpICLE~f~--d~~iL~~CgHtFC~sCI~~Wlk~---snsCPlCR~~f~ 70 (845)
-+.|||-.+.-. ++++...|||+.|..-|.+..++ ...||.|.....
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQL 385 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence 378999888653 56777779999999999998754 368999976644
No 128
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=70.54 E-value=2.4 Score=46.53 Aligned_cols=44 Identities=20% Similarity=0.542 Sum_probs=35.5
Q ss_pred cccccccccccc---cceeecCCCCcccHhHHHhhhccCCCCCCccC
Q 003132 24 CGRCGICMDVVI---DRGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (845)
Q Consensus 24 d~~CpICLE~f~---d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~ 67 (845)
...||||.+.+. ..+...+|+|..|..|+.........||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 345999999764 33566679999999999998766699999987
No 129
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=69.18 E-value=4.5 Score=49.88 Aligned_cols=58 Identities=24% Similarity=0.497 Sum_probs=41.9
Q ss_pred CccccCccccccccccccc-ccceeecCCCCc-----ccHhHHHhhhc--cCCCCCCccCccceee
Q 003132 16 ENDLLNFECGRCGICMDVV-IDRGVLDCCQHW-----FCFACIDNWST--ITNLCPLCQGEFQLIT 73 (845)
Q Consensus 16 ~~DssssEd~~CpICLE~f-~d~~iL~~CgHt-----FC~sCI~~Wlk--~snsCPlCR~~f~~I~ 73 (845)
++..++.+...|-||...- .+.+...+|..+ .|.+|+.+|.. ....|-+|..++.+-.
T Consensus 4 ~~~~mN~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 4 ENTPMNEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred CCCCCCccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 5567777789999999753 333444444433 89999999985 3567999998877644
No 130
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=67.73 E-value=3.1 Score=34.52 Aligned_cols=42 Identities=24% Similarity=0.504 Sum_probs=23.1
Q ss_pred ccccccccccccceeecCCCCcccHhHHHhhh-----ccCCCCCCccC
Q 003132 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWS-----TITNLCPLCQG 67 (845)
Q Consensus 25 ~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wl-----k~snsCPlCR~ 67 (845)
..|||....+..++....|.|.-|++= ..|+ .....||+|++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcC
Confidence 589999999988899999999977653 2232 23567999975
No 131
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=66.91 E-value=0.95 Score=39.78 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=21.0
Q ss_pred CCCCCCCCCCccccCCCCccccccC--CCCccccccccCCCCCC-------CCCCcccCCcCCCC
Q 003132 124 DGCKIRSGSMVAEESSNLDTSIACD--SCDLWYHAFCVGFDPEG-------TCEDTWLCPRCVAE 179 (845)
Q Consensus 124 ~~C~ICgGs~~~~dddned~mLlCD--sCDraYH~~CLgPpl~~-------vPegdW~CP~Cr~~ 179 (845)
..|.||..... +++....+.|+ .|...||..||.-.+.. ...-.+.||.|...
T Consensus 3 ~~C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS----TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 35889954321 12333468898 99999999998765221 11234679999876
No 132
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.89 E-value=3.3 Score=43.18 Aligned_cols=47 Identities=28% Similarity=0.627 Sum_probs=32.1
Q ss_pred cccccccccccccc------eeecCCCCcccHhHHHhhhcc----C-------CCCCCccCccc
Q 003132 24 CGRCGICMDVVIDR------GVLDCCQHWFCFACIDNWSTI----T-------NLCPLCQGEFQ 70 (845)
Q Consensus 24 d~~CpICLE~f~d~------~iL~~CgHtFC~sCI~~Wlk~----s-------nsCPlCR~~f~ 70 (845)
-..|.||+..--+. .--..|+..||.-|+..|++. + ..||.|..++.
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 34688887753221 223359999999999999854 1 24999987764
No 133
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=61.76 E-value=3.9 Score=34.48 Aligned_cols=42 Identities=24% Similarity=0.876 Sum_probs=25.2
Q ss_pred ccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccc
Q 003132 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (845)
Q Consensus 27 CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~ 70 (845)
|--|.-. +...+..=.|..|..|+...+.....||+|..++.
T Consensus 5 CKsCWf~--~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 5 CKSCWFA--NKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp --SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred Chhhhhc--CCCeeeecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 4444433 44444433699999999999999999999987653
No 134
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=60.45 E-value=6.3 Score=44.27 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=26.8
Q ss_pred CcccccccccccccccceeecCCC--CcccHhHHHhhh
Q 003132 21 NFECGRCGICMDVVIDRGVLDCCQ--HWFCFACIDNWS 56 (845)
Q Consensus 21 ssEd~~CpICLE~f~d~~iL~~Cg--HtFC~sCI~~Wl 56 (845)
+.....|..|-+. .+++....|. |+-|.+|...+-
T Consensus 218 N~~ni~C~~Ctdv-~~~vlvf~Cns~HvtC~dCFr~yc 254 (446)
T KOG0006|consen 218 NSRNITCITCTDV-RSPVLVFQCNSRHVTCLDCFRLYC 254 (446)
T ss_pred ccccceeEEecCC-ccceEEEecCCceeehHHhhhhHh
Confidence 4556789999886 5556666798 999999998653
No 135
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.97 E-value=3.9 Score=50.75 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=26.7
Q ss_pred ccccccccccccc-cceeecCCCCcccHhHHHhh
Q 003132 23 ECGRCGICMDVVI-DRGVLDCCQHWFCFACIDNW 55 (845)
Q Consensus 23 Ed~~CpICLE~f~-d~~iL~~CgHtFC~sCI~~W 55 (845)
-+++|.+|.-.+. .+-.+-+|+|.||..||..-
T Consensus 816 p~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred CccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 3579999999874 44567779999999999864
No 136
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=59.01 E-value=6.4 Score=48.35 Aligned_cols=53 Identities=19% Similarity=0.522 Sum_probs=37.4
Q ss_pred CCCCCccccCccccccccccccccc-----------ceeecCCCCcccHhHHHhhhccCCCCCC
Q 003132 12 VDNTENDLLNFECGRCGICMDVVID-----------RGVLDCCQHWFCFACIDNWSTITNLCPL 64 (845)
Q Consensus 12 ~D~~~~DssssEd~~CpICLE~f~d-----------~~iL~~CgHtFC~sCI~~Wlk~snsCPl 64 (845)
+..+.+..+......|.||...+.. --++..|+|+.|-+|...|..+...||.
T Consensus 1006 cn~c~n~~s~~ri~~~~~~~~~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1006 CNHCRNGVSEVRITQCAICKGFTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccCcccceeeeeccccccceeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 3345555666666666666665432 1345669999999999999999889984
No 137
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.59 E-value=5.4 Score=45.53 Aligned_cols=42 Identities=26% Similarity=0.570 Sum_probs=29.2
Q ss_pred ccccccccc-ccccc--ceeecCCCCcccHhHHHhhhcc------CCCCCC
Q 003132 23 ECGRCGICM-DVVID--RGVLDCCQHWFCFACIDNWSTI------TNLCPL 64 (845)
Q Consensus 23 Ed~~CpICL-E~f~d--~~iL~~CgHtFC~sCI~~Wlk~------snsCPl 64 (845)
....|.||+ +.... ......|+|.||..|..++... ..+||.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 467899999 44321 1235679999999999987653 345754
No 138
>PLN02189 cellulose synthase
Probab=58.43 E-value=7.8 Score=49.21 Aligned_cols=51 Identities=22% Similarity=0.416 Sum_probs=38.0
Q ss_pred cccccccccccccc------ceeecCCCCcccHhHHHhh-hccCCCCCCccCccceee
Q 003132 23 ECGRCGICMDVVID------RGVLDCCQHWFCFACIDNW-STITNLCPLCQGEFQLIT 73 (845)
Q Consensus 23 Ed~~CpICLE~f~d------~~iL~~CgHtFC~sCI~~W-lk~snsCPlCR~~f~~I~ 73 (845)
....|.||.+.+.. .+-+.-|+--.|..|.+-= ...++.||+|+..|....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 45699999998752 1455668888999999643 345789999999887443
No 139
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=57.34 E-value=10 Score=39.60 Aligned_cols=53 Identities=25% Similarity=0.601 Sum_probs=35.6
Q ss_pred cccccC-CCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 117 AVICLD-GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 117 ~~iClD-~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
+..|.. +-.|++|...+ .--+-+.+....|..|...||..|.... . ||.|...
T Consensus 145 C~lC~~kGfiCe~C~~~~-~IfPF~~~~~~~C~~C~~v~H~~C~~~~--~-------CpkC~R~ 198 (202)
T PF13901_consen 145 CELCQQKGFICEICNSDD-IIFPFQIDTTVRCPKCKSVFHKSCFRKK--S-------CPKCARR 198 (202)
T ss_pred hHHHHhCCCCCccCCCCC-CCCCCCCCCeeeCCcCccccchhhcCCC--C-------CCCcHhH
Confidence 334544 56899996432 1112223357889999999999999852 1 9999754
No 140
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=55.38 E-value=2.8 Score=45.44 Aligned_cols=50 Identities=24% Similarity=0.534 Sum_probs=35.4
Q ss_pred cccccccccccccc-cc---eeecC-CCCcccHhHHHhhh-ccCCCCC--CccCccce
Q 003132 22 FECGRCGICMDVVI-DR---GVLDC-CQHWFCFACIDNWS-TITNLCP--LCQGEFQL 71 (845)
Q Consensus 22 sEd~~CpICLE~f~-d~---~iL~~-CgHtFC~sCI~~Wl-k~snsCP--lCR~~f~~ 71 (845)
..+..||||..+.. ++ ..+.+ |-|..|.+|...-+ .+--.|| -|..-++.
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 35679999998742 22 23333 99999999999855 4566799 88765543
No 141
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.24 E-value=9.3 Score=41.93 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=25.9
Q ss_pred cccccccccc-ccc---cceeecCCCCcccHhHHHhhhc
Q 003132 23 ECGRCGICMD-VVI---DRGVLDCCQHWFCFACIDNWST 57 (845)
Q Consensus 23 Ed~~CpICLE-~f~---d~~iL~~CgHtFC~sCI~~Wlk 57 (845)
..+.|++|.. .+. ..-.+..|+|.||..|..-|..
T Consensus 94 ~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 94 REETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred cccccccccCcccccccccceeeecccccchhhhHHHHH
Confidence 3567888888 321 2356777999999999998875
No 142
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.11 E-value=5.2 Score=43.79 Aligned_cols=49 Identities=29% Similarity=0.670 Sum_probs=34.2
Q ss_pred ccccccccccccccc---eeecCC-----CCcccHhHHHhhhcc--------CCCCCCccCccce
Q 003132 23 ECGRCGICMDVVIDR---GVLDCC-----QHWFCFACIDNWSTI--------TNLCPLCQGEFQL 71 (845)
Q Consensus 23 Ed~~CpICLE~f~d~---~iL~~C-----gHtFC~sCI~~Wlk~--------snsCPlCR~~f~~ 71 (845)
.+..|=||+..=.+- ....+| .|..|..|+..|... ...||+|+.++..
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 356899999875432 233444 466999999999732 3469999987653
No 143
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.00 E-value=5.1 Score=44.39 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=26.0
Q ss_pred Ccccccccccccccccceeec---CCCCcccHhHHHhhhc
Q 003132 21 NFECGRCGICMDVVIDRGVLD---CCQHWFCFACIDNWST 57 (845)
Q Consensus 21 ssEd~~CpICLE~f~d~~iL~---~CgHtFC~sCI~~Wlk 57 (845)
....+.|.+|.|.+.|--... -=.|.||+-|-++-.+
T Consensus 265 ~~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CCCceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 445689999999987642221 2369999999777554
No 144
>PLN02436 cellulose synthase A
Probab=54.77 E-value=9.8 Score=48.55 Aligned_cols=51 Identities=22% Similarity=0.449 Sum_probs=37.8
Q ss_pred cccccccccccccc-----c-eeecCCCCcccHhHHHhhh-ccCCCCCCccCccceee
Q 003132 23 ECGRCGICMDVVID-----R-GVLDCCQHWFCFACIDNWS-TITNLCPLCQGEFQLIT 73 (845)
Q Consensus 23 Ed~~CpICLE~f~d-----~-~iL~~CgHtFC~sCI~~Wl-k~snsCPlCR~~f~~I~ 73 (845)
....|.||.+.+.. . +-+.-|+--.|..|.+-=. ..++.||+|+..+....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 34599999999742 1 4566688889999996433 45789999998887433
No 145
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.97 E-value=6.4 Score=41.49 Aligned_cols=39 Identities=26% Similarity=0.686 Sum_probs=29.4
Q ss_pred ccccccccccceeecCCCCc-ccHhHHHhhhccCCCCCCccCccc
Q 003132 27 CGICMDVVIDRGVLDCCQHW-FCFACIDNWSTITNLCPLCQGEFQ 70 (845)
Q Consensus 27 CpICLE~f~d~~iL~~CgHt-FC~sCI~~Wlk~snsCPlCR~~f~ 70 (845)
|-+|.+.-.. +.+.||.|. +|..|-.. ...||+|+....
T Consensus 161 Cr~C~~~~~~-VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREAT-VLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCce-EEeecccceEeccccccc----CccCCCCcChhh
Confidence 8888887433 778889998 99999643 345999987644
No 146
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=53.33 E-value=4.3 Score=49.36 Aligned_cols=47 Identities=26% Similarity=0.565 Sum_probs=36.3
Q ss_pred cccccccccccccccceeecCCCCcccHhHHHhhhc---cCCCCCCccCcc
Q 003132 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWST---ITNLCPLCQGEF 69 (845)
Q Consensus 22 sEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk---~snsCPlCR~~f 69 (845)
.-..+|+||+..+..+ .+..|-|-||..|+..-+. ....||+|+...
T Consensus 19 ~k~lEc~ic~~~~~~p-~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 19 QKILECPICLEHVKEP-SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhhccCCceeEEeecc-chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 4457899999998885 5666999999999886432 355799998544
No 147
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=52.88 E-value=11 Score=47.97 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=38.7
Q ss_pred ccccccccccccccc------ceeecCCCCcccHhHHHh-hhccCCCCCCccCccceee
Q 003132 22 FECGRCGICMDVVID------RGVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLIT 73 (845)
Q Consensus 22 sEd~~CpICLE~f~d------~~iL~~CgHtFC~sCI~~-Wlk~snsCPlCR~~f~~I~ 73 (845)
.....|-||.+.+.. -+-+.-|+--.|+.|-+- ..+.+..||+|+..|....
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 345699999998742 145666888899999864 3356789999998887443
No 148
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.46 E-value=5.3 Score=48.25 Aligned_cols=40 Identities=25% Similarity=0.576 Sum_probs=29.0
Q ss_pred cccccccccccc---ceeecCCCCcccHhHHHhhhccCCCCCCccC
Q 003132 25 GRCGICMDVVID---RGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (845)
Q Consensus 25 ~~CpICLE~f~d---~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~ 67 (845)
..|.||++.|.. -.+-+.|+|+.|..|++.- .+.+|| |..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 579999998742 1455569999999999863 344688 543
No 149
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=51.81 E-value=3.5 Score=36.42 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=20.8
Q ss_pred cccCCCCccccccccCCCCCCCCCCcccCCcCC
Q 003132 145 IACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCV 177 (845)
Q Consensus 145 LlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr 177 (845)
+.=..|+..||..|+...+.. ...||.|+
T Consensus 45 i~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR 73 (73)
T PF12678_consen 45 IVWGPCGHIFHFHCISQWLKQ----NNTCPLCR 73 (73)
T ss_dssp EEEETTSEEEEHHHHHHHHTT----SSB-TTSS
T ss_pred eEecccCCCEEHHHHHHHHhc----CCcCCCCC
Confidence 333469999999999877643 33899996
No 150
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=49.92 E-value=12 Score=34.56 Aligned_cols=49 Identities=22% Similarity=0.425 Sum_probs=20.4
Q ss_pred ccccccccccccccc------eeecCCCCcccHhHHHhhh-ccCCCCCCccCccce
Q 003132 23 ECGRCGICMDVVIDR------GVLDCCQHWFCFACIDNWS-TITNLCPLCQGEFQL 71 (845)
Q Consensus 23 Ed~~CpICLE~f~d~------~iL~~CgHtFC~sCI~~Wl-k~snsCPlCR~~f~~ 71 (845)
....|-||-+.+.-. +-...|.--.|+.|..-=. .....||+|+..|..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 357899999987421 3344577789999987533 457889999977764
No 151
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=49.68 E-value=4.9 Score=44.53 Aligned_cols=56 Identities=23% Similarity=0.371 Sum_probs=37.8
Q ss_pred CCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCC---CCCCCcccCCcCCCC
Q 003132 124 DGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPE---GTCEDTWLCPRCVAE 179 (845)
Q Consensus 124 ~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~---~vPegdW~CP~Cr~~ 179 (845)
..|.+|-........+..+-|+.|..|...||.+|+..+.. .+....|-|-.|..-
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC 317 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELC 317 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhh
Confidence 35777743322222233456999999999999999997732 234568988888654
No 152
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=49.18 E-value=8.8 Score=43.33 Aligned_cols=37 Identities=35% Similarity=0.797 Sum_probs=31.8
Q ss_pred cccccCCCCccccccc--cCCCCC-CCCCCcccCCcCCCC
Q 003132 143 TSIACDSCDLWYHAFC--VGFDPE-GTCEDTWLCPRCVAE 179 (845)
Q Consensus 143 ~mLlCDsCDraYH~~C--LgPpl~-~vPegdW~CP~Cr~~ 179 (845)
.|+-|+.|..|||..| ++++.. ..+...|+|..|...
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~ 113 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEA 113 (345)
T ss_pred hhhccccccccccccccccCchhhcCCccccccccccchh
Confidence 6899999999999999 998854 445679999999777
No 153
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=49.17 E-value=5.4 Score=37.51 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=16.8
Q ss_pred hhheeccccccccCCCCCccchhc
Q 003132 674 LSRLYLADTSVFPRKDNIMPLSAL 697 (845)
Q Consensus 674 lsrlylad~sv~pr~~~~~pl~~~ 697 (845)
..-||+||+||||.--..-|-..+
T Consensus 114 ~~nL~V~DaSv~P~~~~~np~~t~ 137 (144)
T PF05199_consen 114 VRNLRVADASVFPTSPGANPTLTI 137 (144)
T ss_dssp SBSEEE-SGGGSSS-SSSSSHHHH
T ss_pred eeeEEECCCCcCCCCCCcCcHHHH
Confidence 356999999999998777665544
No 154
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.00 E-value=8.1 Score=44.60 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=29.8
Q ss_pred cccccccccccccccceeecCCCCcccHhHHHhhhcc
Q 003132 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI 58 (845)
Q Consensus 22 sEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~ 58 (845)
.....|.||.+.+........|+|.||..|...+..+
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 4457899999997654566679999999999988754
No 155
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.38 E-value=8.9 Score=43.82 Aligned_cols=42 Identities=26% Similarity=0.703 Sum_probs=31.6
Q ss_pred ccccccccccccc-----cceeecCCCCcccHhHHHhhhccCCCCCCc
Q 003132 23 ECGRCGICMDVVI-----DRGVLDCCQHWFCFACIDNWSTITNLCPLC 65 (845)
Q Consensus 23 Ed~~CpICLE~f~-----d~~iL~~CgHtFC~sCI~~Wlk~snsCPlC 65 (845)
.-..|++|.-.+. ...+.. |+|.||..|...|......|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 3567999988763 225666 99999999999998776666555
No 156
>PLN02400 cellulose synthase
Probab=48.03 E-value=15 Score=47.06 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=37.8
Q ss_pred cccccccccccccc------ceeecCCCCcccHhHHHh-hhccCCCCCCccCccceee
Q 003132 23 ECGRCGICMDVVID------RGVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLIT 73 (845)
Q Consensus 23 Ed~~CpICLE~f~d------~~iL~~CgHtFC~sCI~~-Wlk~snsCPlCR~~f~~I~ 73 (845)
....|-||-+.+.- -+-+..|+--.|+.|-+- ....++.||+|+..+....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc
Confidence 34699999999742 145666888899999854 2345788999998887543
No 157
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=47.71 E-value=8.2 Score=35.88 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=24.9
Q ss_pred cCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 147 CDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 147 CDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
-..|...||+.|+.-.+... ..+-.||.||..
T Consensus 49 ~g~C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 49 WGKCSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred eccCccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 34599999999999886542 345699999987
No 158
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=47.03 E-value=7.2 Score=42.39 Aligned_cols=47 Identities=19% Similarity=0.389 Sum_probs=22.3
Q ss_pred ccccccccccccccc-eeec---CCCCcccHhHHHhhhccCCCCCCccCcc
Q 003132 23 ECGRCGICMDVVIDR-GVLD---CCQHWFCFACIDNWSTITNLCPLCQGEF 69 (845)
Q Consensus 23 Ed~~CpICLE~f~d~-~iL~---~CgHtFC~sCI~~Wlk~snsCPlCR~~f 69 (845)
....||||...-.-. .... .=.|.+|.-|-..|......||.|...-
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTD 221 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---S
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCC
Confidence 346999999863211 1111 2357799999999999899999997653
No 159
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.87 E-value=5.5 Score=43.91 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=36.6
Q ss_pred cCCCCCCCCCCCCccccCCCCcc--ccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 121 LDGDGCKIRSGSMVAEESSNLDT--SIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 121 lD~~~C~ICgGs~~~~dddned~--mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
+++..|.+||++.+...+ .+.. -++==+|++.||-+|+.-.. +-...-.||.|...
T Consensus 222 l~d~vCaVCg~~~~~s~~-eegvienty~LsCnHvFHEfCIrGWc--ivGKkqtCPYCKek 279 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVD-EEGVIENTYKLSCNHVFHEFCIRGWC--IVGKKQTCPYCKEK 279 (328)
T ss_pred CCcchhHhhcchheeecc-hhhhhhhheeeecccchHHHhhhhhe--eecCCCCCchHHHH
Confidence 456789999888654321 1111 12233799999999998763 12235579999887
No 160
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.06 E-value=7.2 Score=43.51 Aligned_cols=55 Identities=24% Similarity=0.547 Sum_probs=45.0
Q ss_pred ccccCcccccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccce
Q 003132 17 NDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (845)
Q Consensus 17 ~DssssEd~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~ 71 (845)
++........|.||...+.-+.....|.|.||..|...|....+-||-|+.....
T Consensus 98 dA~~~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 98 DAGFQQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred hccccCCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 3444555678999999887767777799999999999999999999999876553
No 161
>PLN02195 cellulose synthase A
Probab=46.02 E-value=18 Score=45.99 Aligned_cols=49 Identities=20% Similarity=0.359 Sum_probs=36.9
Q ss_pred ccccccccccccccc------ceeecCCCCcccHhHHHhhh-ccCCCCCCccCccc
Q 003132 22 FECGRCGICMDVVID------RGVLDCCQHWFCFACIDNWS-TITNLCPLCQGEFQ 70 (845)
Q Consensus 22 sEd~~CpICLE~f~d------~~iL~~CgHtFC~sCI~~Wl-k~snsCPlCR~~f~ 70 (845)
+....|.||.+.+.. -+-+.-|+.-.|+.|.+-=. +.+..||+|+..+.
T Consensus 4 ~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 345689999997742 14566699999999985433 45788999998876
No 162
>PHA02929 N1R/p28-like protein; Provisional
Probab=43.78 E-value=11 Score=40.78 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 122 D~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
+...|.+|....... .........=..|.+.||..|+...+.. .-.||.|+..
T Consensus 173 ~~~eC~ICle~~~~~-~~~~~~~~vl~~C~H~FC~~CI~~Wl~~----~~tCPlCR~~ 225 (238)
T PHA02929 173 KDKECAICMEKVYDK-EIKNMYFGILSNCNHVFCIECIDIWKKE----KNTCPVCRTP 225 (238)
T ss_pred CCCCCccCCcccccC-ccccccceecCCCCCcccHHHHHHHHhc----CCCCCCCCCE
Confidence 456899996432110 0000011122479999999999887643 3479999987
No 163
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=43.63 E-value=20 Score=38.26 Aligned_cols=49 Identities=18% Similarity=0.523 Sum_probs=34.8
Q ss_pred cccccccccccccc---eeecCCC-----CcccHhHHHhhhc--cCCCCCCccCcccee
Q 003132 24 CGRCGICMDVVIDR---GVLDCCQ-----HWFCFACIDNWST--ITNLCPLCQGEFQLI 72 (845)
Q Consensus 24 d~~CpICLE~f~d~---~iL~~Cg-----HtFC~sCI~~Wlk--~snsCPlCR~~f~~I 72 (845)
+..|-||....... ....+|. +..|..|+..|.. +...|.+|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 57899999965321 2344443 3379999999986 567899998776643
No 164
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.92 E-value=12 Score=41.82 Aligned_cols=29 Identities=24% Similarity=0.768 Sum_probs=21.8
Q ss_pred CCCcccHhHHHhhhc-------------cCCCCCCccCccce
Q 003132 43 CQHWFCFACIDNWST-------------ITNLCPLCQGEFQL 71 (845)
Q Consensus 43 CgHtFC~sCI~~Wlk-------------~snsCPlCR~~f~~ 71 (845)
|.-..|.+|+-+|.- ++-.||.||+.|-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 455578899998862 34579999998864
No 165
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.41 E-value=10 Score=43.06 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=30.8
Q ss_pred CCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 124 DGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 124 ~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
..|.||.... ..++- + .==-|.+.||..|+++++.. ..-+||.|...
T Consensus 230 ~~CaIClEdY--~~Gdk---l-RiLPC~H~FH~~CIDpWL~~---~r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDY--EKGDK---L-RILPCSHKFHVNCIDPWLTQ---TRTFCPVCKRD 276 (348)
T ss_pred ceEEEeeccc--ccCCe---e-eEecCCCchhhccchhhHhh---cCccCCCCCCc
Confidence 3799995332 22211 1 11358889999999999742 13479999887
No 166
>PF14805 THDPS_N_2: Tetrahydrodipicolinate N-succinyltransferase N-terminal; PDB: 3EG4_A 3TDT_A 2TDT_A 1KGT_A 1TDT_A 1KGQ_A 3BXY_A 3GOS_A 3TK8_A.
Probab=41.76 E-value=57 Score=29.35 Aligned_cols=44 Identities=32% Similarity=0.447 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcCcccccccCCCHHHHHHHHHHHcCCCCCCCCCCchhHHHHHHHHHhhccccc
Q 003132 537 QELRKEIREAVRNRSSKDCDENLFDPKLLAAFRAAIAGPKCEPVKQPAHLAVKVKKSMLEKGKVRE 602 (845)
Q Consensus 537 ~~l~~eir~~v~~~~~~~~~~~~fd~kll~afr~a~~~~~~~~~~~~~~~~~~~~~~~l~kgk~re 602 (845)
+.|++.|-+|-.++.... ...-|+.+..||+.+| .||++|+||=
T Consensus 1 ~~l~~~Ie~aw~~r~~l~--~~~~~~~~~~av~~~i--------------------~~Ld~G~lRv 44 (70)
T PF14805_consen 1 SQLQKIIEAAWENRDELT--PSNADPELRDAVEEVI--------------------ELLDSGELRV 44 (70)
T ss_dssp HHHHHHHHHHHHGGGG-B--TTT--HHHHHHHHHHH--------------------HHHHTTSS-S
T ss_pred ChHHHHHHHHHHhHhhCC--CccCCHHHHHHHHHHH--------------------HHhcCCCeEE
Confidence 468999999998854433 4456888888888877 4789999883
No 167
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=41.36 E-value=24 Score=43.10 Aligned_cols=47 Identities=28% Similarity=0.403 Sum_probs=33.2
Q ss_pred CCCCCCCCCccccCCCCccccccCCCCcc-ccccccCCCCCCCCCCcccCCcCCCC
Q 003132 125 GCKIRSGSMVAEESSNLDTSIACDSCDLW-YHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 125 ~C~ICgGs~~~~dddned~mLlCDsCDra-YH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
.|..|+.. +.+...||..|+.. -|..|-.+... +|.+.-||+.|-..
T Consensus 3 ~Cp~Cg~~-------n~~~akFC~~CG~~l~~~~Cp~CG~~-~~~~~~fC~~CG~~ 50 (645)
T PRK14559 3 ICPQCQFE-------NPNNNRFCQKCGTSLTHKPCPQCGTE-VPVDEAHCPNCGAE 50 (645)
T ss_pred cCCCCCCc-------CCCCCccccccCCCCCCCcCCCCCCC-CCcccccccccCCc
Confidence 58888533 33456889999876 34677777744 67778899999766
No 168
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=40.65 E-value=22 Score=45.51 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=38.4
Q ss_pred ccccccccccccccc------ceeecCCCCcccHhHHHhh-hccCCCCCCccCccceee
Q 003132 22 FECGRCGICMDVVID------RGVLDCCQHWFCFACIDNW-STITNLCPLCQGEFQLIT 73 (845)
Q Consensus 22 sEd~~CpICLE~f~d------~~iL~~CgHtFC~sCI~~W-lk~snsCPlCR~~f~~I~ 73 (845)
.....|-||-+.+.. -+-+.-|+--.|..|.+-= ...+..||+|+..+....
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~ 71 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHK 71 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 345799999998742 1456668888999999543 345788999998887433
No 169
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.29 E-value=2.9 Score=47.89 Aligned_cols=53 Identities=17% Similarity=0.367 Sum_probs=42.0
Q ss_pred Cccccccccccccccc---ceeecCCCCcccHhHHHhhhccCCCCCCccCccceee
Q 003132 21 NFECGRCGICMDVVID---RGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (845)
Q Consensus 21 ssEd~~CpICLE~f~d---~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I~ 73 (845)
++-...|+||.+.+.. ...-..|+|.++..||.+|+.....||.|+.++..+.
T Consensus 193 ~slv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 193 SSLVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred HHHHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 3445689999998853 3445569999999999999988889999998765433
No 170
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=38.11 E-value=30 Score=29.45 Aligned_cols=40 Identities=25% Similarity=0.481 Sum_probs=21.2
Q ss_pred ccccccccccc---------eeecCCCCcccHhHHHhhhccCCCCCCcc
Q 003132 27 CGICMDVVIDR---------GVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (845)
Q Consensus 27 CpICLE~f~d~---------~iL~~CgHtFC~sCI~~Wlk~snsCPlCR 66 (845)
|.-|+..|... ...+.|.+.||.+|=.--.+.-..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 56666666442 56778999999999433234445699884
No 171
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.10 E-value=14 Score=37.26 Aligned_cols=48 Identities=29% Similarity=0.598 Sum_probs=28.3
Q ss_pred ccccccccccc-cccce--eecCCCCcccHhHHHhhhcc----CCCCCCccCccc
Q 003132 23 ECGRCGICMDV-VIDRG--VLDCCQHWFCFACIDNWSTI----TNLCPLCQGEFQ 70 (845)
Q Consensus 23 Ed~~CpICLE~-f~d~~--iL~~CgHtFC~sCI~~Wlk~----snsCPlCR~~f~ 70 (845)
.+.+|.||+.. |.+.+ .+.-|.-.||..|--.-..+ ...|-+|+....
T Consensus 64 ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~ 118 (169)
T KOG3799|consen 64 DDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQE 118 (169)
T ss_pred cCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHH
Confidence 45789999986 44421 12223444788886553322 346999987544
No 172
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=35.93 E-value=38 Score=40.74 Aligned_cols=52 Identities=17% Similarity=0.329 Sum_probs=43.2
Q ss_pred cccccccccccc---cceeecCCCCcccHhHHHhhhccCCCCCCccCccceeeec
Q 003132 24 CGRCGICMDVVI---DRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCV 75 (845)
Q Consensus 24 d~~CpICLE~f~---d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I~~i 75 (845)
...|.+|+.... .+.....|.|.+|+.|+..|......|+.|...+..+...
T Consensus 260 ~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~~~~e 314 (553)
T KOG4430|consen 260 KNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRTISKE 314 (553)
T ss_pred ccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhcccccccccccc
Confidence 467999988653 3467777999999999999999999999999998876643
No 173
>PLN02400 cellulose synthase
Probab=34.35 E-value=38 Score=43.63 Aligned_cols=54 Identities=24% Similarity=0.561 Sum_probs=41.4
Q ss_pred cCCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 121 LDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 121 lD~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
..++.|.|||..... ..+-+.-+.|..|.-..+..|+.-- ..+|.=.||.|...
T Consensus 34 ~~gqiCqICGD~VG~--t~dGe~FVAC~eCaFPVCRpCYEYE---RkeGnq~CPQCkTr 87 (1085)
T PLN02400 34 LNGQICQICGDDVGV--TETGDVFVACNECAFPVCRPCYEYE---RKDGTQCCPQCKTR 87 (1085)
T ss_pred cCCceeeecccccCc--CCCCCEEEEEccCCCccccchhhee---cccCCccCcccCCc
Confidence 356789999755433 3344467999999999999999654 56688999999888
No 174
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=33.86 E-value=40 Score=38.21 Aligned_cols=49 Identities=20% Similarity=0.419 Sum_probs=38.6
Q ss_pred cccccccccccccc---cceeecCCCCcccHhHHHhhhccCCCCCCccCccc
Q 003132 22 FECGRCGICMDVVI---DRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (845)
Q Consensus 22 sEd~~CpICLE~f~---d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~ 70 (845)
.-...|+||.+... ....+-+|++..|+.|...-.....+||.||..+.
T Consensus 247 ~v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 247 SVPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred ccCCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 44578999999752 23567779999999999888888899999996543
No 175
>PLN02436 cellulose synthase A
Probab=33.18 E-value=40 Score=43.44 Aligned_cols=54 Identities=22% Similarity=0.566 Sum_probs=40.8
Q ss_pred cCCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 121 LDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 121 lD~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
..++.|.|||..... ..+-+.-+.|..|.-..+..|+.-- ..+|.-.||.|...
T Consensus 34 ~~~~iCqICGD~Vg~--t~dGe~FVACn~C~fpvCr~Cyeye---r~eg~~~Cpqckt~ 87 (1094)
T PLN02436 34 LSGQTCQICGDEIEL--TVDGEPFVACNECAFPVCRPCYEYE---RREGNQACPQCKTR 87 (1094)
T ss_pred cCCccccccccccCc--CCCCCEEEeeccCCCccccchhhhh---hhcCCccCcccCCc
Confidence 356689999755433 2333467999999999999999654 55688899999888
No 176
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=32.88 E-value=14 Score=41.99 Aligned_cols=47 Identities=26% Similarity=0.582 Sum_probs=27.1
Q ss_pred cccccccccccccccc--e--eecCCCCcc--------cHhHHHhhh-----ccCCCCCCccCc
Q 003132 22 FECGRCGICMDVVIDR--G--VLDCCQHWF--------CFACIDNWS-----TITNLCPLCQGE 68 (845)
Q Consensus 22 sEd~~CpICLE~f~d~--~--iL~~CgHtF--------C~sCI~~Wl-----k~snsCPlCR~~ 68 (845)
..++.||+|.+.+... + ++.+|...| ++.|+..-. ..+.+||.||..
T Consensus 13 dl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred ccccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 3568999999987532 2 333343333 334544321 235689999853
No 177
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=32.73 E-value=17 Score=40.86 Aligned_cols=34 Identities=32% Similarity=0.815 Sum_probs=24.1
Q ss_pred cccccCCCCcc---c-------cccccCCCCCCCCCCcccCCcCCCC
Q 003132 143 TSIACDSCDLW---Y-------HAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 143 ~mLlCDsCDra---Y-------H~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
.+-|||.||.. | |.||+.+... +.+-.|+.|...
T Consensus 89 ~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~---~~dK~Cp~C~d~ 132 (389)
T KOG2932|consen 89 RVHFCDRCDFPIAIYGRMIPCKHVFCLECARS---DSDKICPLCDDR 132 (389)
T ss_pred ceEeecccCCcceeeecccccchhhhhhhhhc---CccccCcCcccH
Confidence 36778888754 2 8888887632 236689999887
No 178
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=32.68 E-value=11 Score=41.91 Aligned_cols=42 Identities=24% Similarity=0.611 Sum_probs=31.3
Q ss_pred CCCCCCCCCCccccCCCCccccccC-CCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 124 DGCKIRSGSMVAEESSNLDTSIACD-SCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 124 ~~C~ICgGs~~~~dddned~mLlCD-sCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
.+|.||... .-+-|. .|++.|+..|+.-.+.. .-+||.|+..
T Consensus 26 lrC~IC~~~----------i~ip~~TtCgHtFCslCIR~hL~~----qp~CP~Cr~~ 68 (391)
T COG5432 26 LRCRICDCR----------ISIPCETTCGHTFCSLCIRRHLGT----QPFCPVCRED 68 (391)
T ss_pred HHhhhhhhe----------eecceecccccchhHHHHHHHhcC----CCCCcccccc
Confidence 468888322 335564 79999999999877653 5689999988
No 179
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=30.87 E-value=37 Score=42.13 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=37.1
Q ss_pred cccccccccccc-ceeecCCCCcccHhHHHhhhccCCCCCC--ccCccc
Q 003132 25 GRCGICMDVVID-RGVLDCCQHWFCFACIDNWSTITNLCPL--CQGEFQ 70 (845)
Q Consensus 25 ~~CpICLE~f~d-~~iL~~CgHtFC~sCI~~Wlk~snsCPl--CR~~f~ 70 (845)
..|.+|-..+.. ...+..|+|.-|..|+..|.....-||. |.....
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c~ 828 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLCH 828 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCcccc
Confidence 478999887753 3678889999999999999998888877 765543
No 180
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=30.67 E-value=29 Score=40.22 Aligned_cols=38 Identities=29% Similarity=0.704 Sum_probs=32.7
Q ss_pred CccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 141 LDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 141 ed~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
...|+-|+.|..|=|.+|++..-... ...+.|..|...
T Consensus 98 ~g~~i~c~~c~~Wqh~~C~g~~~~~~-p~~y~c~~c~~~ 135 (508)
T KOG1844|consen 98 EGLMIQCDWCGRWQHKICCGSFKSTK-PDKYVCEICTPR 135 (508)
T ss_pred CceeeCCcccCcccCceeeeecCCCC-chhceeeeeccc
Confidence 46799999999999999999885433 578999999888
No 181
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=30.33 E-value=40 Score=29.09 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=26.6
Q ss_pred cccccccccccccc---cceeecCCCCcccHhHHHh
Q 003132 22 FECGRCGICMDVVI---DRGVLDCCQHWFCFACIDN 54 (845)
Q Consensus 22 sEd~~CpICLE~f~---d~~iL~~CgHtFC~sCI~~ 54 (845)
.....|++|.+.|. +.++.+.|+-.+|+.|-..
T Consensus 3 ~~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 3 YEGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 34578999999994 4578888999999999643
No 182
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=29.60 E-value=53 Score=31.36 Aligned_cols=48 Identities=25% Similarity=0.602 Sum_probs=31.3
Q ss_pred ccccccccccccccc-ceee------cCC---CCcccHhHHHhhhc---------cCCCCCCccCcc
Q 003132 22 FECGRCGICMDVVID-RGVL------DCC---QHWFCFACIDNWST---------ITNLCPLCQGEF 69 (845)
Q Consensus 22 sEd~~CpICLE~f~d-~~iL------~~C---gHtFC~sCI~~Wlk---------~snsCPlCR~~f 69 (845)
+.+..|..|...-.+ .... ..| .-.||..||..+.. ....||.||..-
T Consensus 5 ~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 5 VNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred CCCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 345678888774322 1222 556 77799999887642 256799999743
No 183
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=29.42 E-value=20 Score=34.14 Aligned_cols=50 Identities=26% Similarity=0.539 Sum_probs=30.2
Q ss_pred CCCCCCCCCCCccccCCCCcccccc------CCC---CccccccccCCCC-----CCCCCCcccCCcCCCC
Q 003132 123 GDGCKIRSGSMVAEESSNLDTSIAC------DSC---DLWYHAFCVGFDP-----EGTCEDTWLCPRCVAE 179 (845)
Q Consensus 123 ~~~C~ICgGs~~~~dddned~mLlC------DsC---DraYH~~CLgPpl-----~~vPegdW~CP~Cr~~ 179 (845)
+..|-.|... ..+..+.| ..| ...|...||.-.- +...+.+|.||.|+.-
T Consensus 7 g~~CHqCrqK-------t~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 7 GKTCHQCRQK-------TLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCchhhcCC-------CCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 4557777432 11234556 566 6667777765331 2235679999999875
No 184
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.38 E-value=13 Score=41.82 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=35.4
Q ss_pred cccCCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCCCC
Q 003132 119 ICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVP 181 (845)
Q Consensus 119 iClD~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~~~ 181 (845)
....+-.|.||..... .. .. +.--=|++.||..|+.-++ -...-.||.|+...|
T Consensus 319 ea~~GveCaICms~fi--K~--d~--~~vlPC~H~FH~~Cv~kW~---~~y~~~CPvCrt~iP 372 (374)
T COG5540 319 EADKGVECAICMSNFI--KN--DR--LRVLPCDHRFHVGCVDKWL---LGYSNKCPVCRTAIP 372 (374)
T ss_pred hcCCCceEEEEhhhhc--cc--ce--EEEeccCceechhHHHHHH---hhhcccCCccCCCCC
Confidence 3344568999965432 21 11 2233689999999998764 234567999999854
No 185
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=29.24 E-value=16 Score=29.63 Aligned_cols=30 Identities=23% Similarity=0.596 Sum_probs=15.4
Q ss_pred cccC--CCCccccccccCCCCCCCCCCcccCCcC
Q 003132 145 IACD--SCDLWYHAFCVGFDPEGTCEDTWLCPRC 176 (845)
Q Consensus 145 LlCD--sCDraYH~~CLgPpl~~vPegdW~CP~C 176 (845)
+.|. +|...+|.+|+.-........ .||.|
T Consensus 12 ~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 12 QRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp EE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred ccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 6687 699999999988554332221 68877
No 186
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=28.94 E-value=13 Score=34.16 Aligned_cols=53 Identities=23% Similarity=0.539 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 122 D~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
.++.|.|||.... -..+-+..+.|..|.-.....|+.-- ..+|.-.||.|...
T Consensus 8 ~~qiCqiCGD~VG--l~~~Ge~FVAC~eC~fPvCr~CyEYE---rkeg~q~CpqCkt~ 60 (80)
T PF14569_consen 8 NGQICQICGDDVG--LTENGEVFVACHECAFPVCRPCYEYE---RKEGNQVCPQCKTR 60 (80)
T ss_dssp SS-B-SSS--B----B-SSSSB--S-SSS-----HHHHHHH---HHTS-SB-TTT--B
T ss_pred CCcccccccCccc--cCCCCCEEEEEcccCCccchhHHHHH---hhcCcccccccCCC
Confidence 5677999975543 33444578999999888888887655 34578889999987
No 187
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.65 E-value=41 Score=32.82 Aligned_cols=42 Identities=24% Similarity=0.403 Sum_probs=32.2
Q ss_pred ccccccccccccc-------------eeecCCCCcccHhHHHhhhccCCCCCCcc
Q 003132 25 GRCGICMDVVIDR-------------GVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (845)
Q Consensus 25 ~~CpICLE~f~d~-------------~iL~~CgHtFC~sCI~~Wlk~snsCPlCR 66 (845)
..|.-|+..|... .....|.+.||.+|=.-+...-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4699999987542 33677999999999666666666799996
No 188
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=27.62 E-value=20 Score=40.15 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=31.8
Q ss_pred cccccccccccccc-ee----ecCCCCcccHhHHHhhhccCCCCCCccCc
Q 003132 24 CGRCGICMDVVIDR-GV----LDCCQHWFCFACIDNWSTITNLCPLCQGE 68 (845)
Q Consensus 24 d~~CpICLE~f~d~-~i----L~~CgHtFC~sCI~~Wlk~snsCPlCR~~ 68 (845)
...||||...-.-. .. -..=.|.+|.-|-..|...+..||.|...
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 45999999863110 11 12234669999999999999999999753
No 189
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=27.56 E-value=40 Score=35.14 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.4
Q ss_pred ccccccCCCCccccccccCCCC
Q 003132 142 DTSIACDSCDLWYHAFCVGFDP 163 (845)
Q Consensus 142 d~mLlCDsCDraYH~~CLgPpl 163 (845)
++|..|..|-++||+..|.++.
T Consensus 122 nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 122 NVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred heEEecCCccceeehhhCCCCc
Confidence 4688899999999999998873
No 190
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=27.36 E-value=37 Score=43.66 Aligned_cols=53 Identities=21% Similarity=0.538 Sum_probs=40.6
Q ss_pred CCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 122 D~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
.++.|.|||.... -..+-+.-+.|..|.-..+..|+.-- ..+|.=.||.|...
T Consensus 16 ~~qiCqICGD~vg--~~~~Ge~FVAC~eC~FPVCrpCYEYE---r~eG~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNVG--KTVDGEPFVACDVCAFPVCRPCYEYE---RKDGNQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccccC--cCCCCCEEEEeccCCCccccchhhhh---hhcCCccCCccCCc
Confidence 5668999975543 33344467999999999999999654 56688999999888
No 191
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.93 E-value=41 Score=39.00 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=23.7
Q ss_pred eeecCCCCcccHhHHHhhhccCCCCCCccCccc
Q 003132 38 GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (845)
Q Consensus 38 ~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~ 70 (845)
.+.-.|+|.||+.|...|.... .|+.+...+.
T Consensus 179 ~v~C~~g~~FC~~C~~~~H~p~-~C~~~~~wl~ 210 (444)
T KOG1815|consen 179 EVDCGCGHEFCFACGEESHSPV-SCPGAKKWLK 210 (444)
T ss_pred ceeCCCCchhHhhccccccCCC-cccchHHHHH
Confidence 3455699999999999987665 7777765443
No 192
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.60 E-value=63 Score=35.75 Aligned_cols=48 Identities=17% Similarity=0.283 Sum_probs=35.3
Q ss_pred ccccccccccccccc---ceeecCCCCcccHhHHHhhhccCCCCCCccCccce
Q 003132 22 FECGRCGICMDVVID---RGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (845)
Q Consensus 22 sEd~~CpICLE~f~d---~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~ 71 (845)
.-.+.|||=.-.+.. ...+-+|||+|-..-+.+. ....|++|.+.|.-
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccc
Confidence 446788876554433 3677889999999888763 36689999988764
No 193
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=25.86 E-value=20 Score=29.54 Aligned_cols=20 Identities=30% Similarity=0.746 Sum_probs=16.0
Q ss_pred eeecCCCCcccHhHHHhhhc
Q 003132 38 GVLDCCQHWFCFACIDNWST 57 (845)
Q Consensus 38 ~iL~~CgHtFC~sCI~~Wlk 57 (845)
+..+.|+|.||+.|...|..
T Consensus 41 v~C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 41 VTCPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred eECCCCCCeECCCCCCcCCC
Confidence 45557999999999988853
No 194
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=25.52 E-value=35 Score=38.37 Aligned_cols=45 Identities=16% Similarity=0.452 Sum_probs=32.2
Q ss_pred ccccccccccccccce-e---ecCCCCcccHhHHHhhhccCCCCCCccC
Q 003132 23 ECGRCGICMDVVIDRG-V---LDCCQHWFCFACIDNWSTITNLCPLCQG 67 (845)
Q Consensus 23 Ed~~CpICLE~f~d~~-i---L~~CgHtFC~sCI~~Wlk~snsCPlCR~ 67 (845)
....||||...-.-.. . -..=.|.+|.-|-..|...+..||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 4579999998631101 1 1223466999999999999999999974
No 195
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=25.32 E-value=31 Score=37.76 Aligned_cols=46 Identities=30% Similarity=0.577 Sum_probs=30.1
Q ss_pred ccccccccccc-ccccceeecC--CC-CcccHhHHHhhh--ccCCCCCCccCc
Q 003132 22 FECGRCGICMD-VVIDRGVLDC--CQ-HWFCFACIDNWS--TITNLCPLCQGE 68 (845)
Q Consensus 22 sEd~~CpICLE-~f~d~~iL~~--Cg-HtFC~sCI~~Wl--k~snsCPlCR~~ 68 (845)
.+...| ||-. .+...+-+++ |. -+||+.|+---. +..+.||.|+..
T Consensus 217 ~e~~yC-~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 217 DEPTYC-ICNQVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred CCCEEE-EecccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 345567 4543 3444444554 88 889999976432 457899999865
No 196
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.22 E-value=40 Score=37.96 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 122 D~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
++..|.+|....+. +.+.-++--.|++.|+..|+..-.. .+.-.||.|...
T Consensus 2 d~~~CP~Ck~~~y~----np~~kl~i~~CGH~~C~sCv~~l~~---~~~~~CP~C~~~ 52 (309)
T TIGR00570 2 DDQGCPRCKTTKYR----NPSLKLMVNVCGHTLCESCVDLLFV---RGSGSCPECDTP 52 (309)
T ss_pred CCCCCCcCCCCCcc----CcccccccCCCCCcccHHHHHHHhc---CCCCCCCCCCCc
Confidence 34679999644322 2232122228988888888876422 234479999877
No 197
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=25.22 E-value=22 Score=42.95 Aligned_cols=49 Identities=20% Similarity=0.428 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 123 ~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
+-.|.+|... ...-+-..+...-|+.|..+||..|+.-...- ||.|.-.
T Consensus 511 gfiCe~Cq~~-~iiyPF~~~~~~rC~~C~avfH~~C~~r~s~~-------CPrC~R~ 559 (580)
T KOG1829|consen 511 GFICELCQHN-DIIYPFETRNTRRCSTCLAVFHKKCLRRKSPC-------CPRCERR 559 (580)
T ss_pred eeeeeeccCC-CcccccccccceeHHHHHHHHHHHHHhccCCC-------CCchHHH
Confidence 4578888332 11112223456779999999999999877432 9999655
No 198
>PF13982 YbfN: YbfN-like lipoprotein
Probab=24.79 E-value=48 Score=31.00 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.3
Q ss_pred CCchhhhhHHHHHHHHhcCCC
Q 003132 637 TKTEKIGTLKSVLDLLRNNSQ 657 (845)
Q Consensus 637 ~~~eki~tl~svl~ll~~~~~ 657 (845)
-+|||++.-++||+.||+...
T Consensus 24 G~peKv~~CqsvLnvlKqek~ 44 (89)
T PF13982_consen 24 GSPEKVEACQSVLNVLKQEKA 44 (89)
T ss_pred CChHHHHHHHHHHHHHHhhHH
Confidence 379999999999999997654
No 199
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.10 E-value=67 Score=37.96 Aligned_cols=10 Identities=40% Similarity=0.959 Sum_probs=8.2
Q ss_pred cccCCcCCCC
Q 003132 170 TWLCPRCVAE 179 (845)
Q Consensus 170 dW~CP~Cr~~ 179 (845)
.|.||.|...
T Consensus 253 ~~~Cp~C~s~ 262 (505)
T TIGR00595 253 PKTCPQCGSE 262 (505)
T ss_pred CCCCCCCCCC
Confidence 5889999776
No 200
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=23.83 E-value=18 Score=32.68 Aligned_cols=43 Identities=23% Similarity=0.675 Sum_probs=24.2
Q ss_pred ccccccccccccceeecCCCCcccHhHHHhhhccCCCCCCccCccceee
Q 003132 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (845)
Q Consensus 25 ~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~~I~ 73 (845)
..||.|...+.... +|.+|..|-..+ .....||-|..++..+.
T Consensus 2 ~~CP~C~~~L~~~~-----~~~~C~~C~~~~-~~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-----GHYHCEACQKDY-KKEAFCPDCGQPLEVLK 44 (70)
T ss_dssp -B-SSS-SBEEEET-----TEEEETTT--EE-EEEEE-TTT-SB-EEEE
T ss_pred CcCCCCCCccEEeC-----CEEECccccccc-eecccCCCcccHHHHHH
Confidence 57999998864322 688999997764 33457999998876433
No 201
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=23.53 E-value=29 Score=25.69 Aligned_cols=16 Identities=25% Similarity=0.700 Sum_probs=7.4
Q ss_pred hhhccCCCCCCccCcc
Q 003132 54 NWSTITNLCPLCQGEF 69 (845)
Q Consensus 54 ~Wlk~snsCPlCR~~f 69 (845)
.+......||.|...|
T Consensus 9 ~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 9 EVPESAKFCPHCGYDF 24 (26)
T ss_pred CchhhcCcCCCCCCCC
Confidence 3333444555555444
No 202
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=24 Score=41.97 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=31.9
Q ss_pred ccccCCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCC-CCCCCcccCCcCCCCC
Q 003132 118 VICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPE-GTCEDTWLCPRCVAEV 180 (845)
Q Consensus 118 ~iClD~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~-~vPegdW~CP~Cr~~~ 180 (845)
+.|.-+..|.||-... .+.+. ..|+++|++.|+---.. ..-.+--.||.|+..+
T Consensus 181 v~~~t~~~CPICL~~~--------~~p~~-t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I 235 (513)
T KOG2164|consen 181 VYGSTDMQCPICLEPP--------SVPVR-TNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTI 235 (513)
T ss_pred hhcCcCCcCCcccCCC--------Ccccc-cccCceeeHHHHHHHHhhhcccCCccCCchhhhc
Confidence 3444477899994321 11122 24999999999754322 1122333799998883
No 203
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.25 E-value=47 Score=36.59 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=25.4
Q ss_pred ccccccccccccceeecCCCCcccHhHHHhhh
Q 003132 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWS 56 (845)
Q Consensus 25 ~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wl 56 (845)
+.|+.||..+.+++ +.+=||.||+.||-++.
T Consensus 44 dcCsLtLqPc~dPv-it~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPV-ITPDGYLFDREAILEYI 74 (303)
T ss_pred ceeeeecccccCCc-cCCCCeeeeHHHHHHHH
Confidence 47999999998854 44479999999998864
No 204
>PHA02926 zinc finger-like protein; Provisional
Probab=23.17 E-value=35 Score=37.07 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=33.6
Q ss_pred cCCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCC--CCCcccCCcCCCC
Q 003132 121 LDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGT--CEDTWLCPRCVAE 179 (845)
Q Consensus 121 lD~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~v--PegdW~CP~Cr~~ 179 (845)
.....|.+|..........+...--+=..|++.||..|+.-..... ......||.|+..
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~ 228 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTR 228 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcce
Confidence 3467899995332110000110011224788899999988664321 2346789999988
No 205
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=23.10 E-value=26 Score=31.47 Aligned_cols=21 Identities=29% Similarity=0.768 Sum_probs=19.3
Q ss_pred ccccccCCCCccccccccCCC
Q 003132 142 DTSIACDSCDLWYHAFCVGFD 162 (845)
Q Consensus 142 d~mLlCDsCDraYH~~CLgPp 162 (845)
..|+.|.+|+...|-.|++|.
T Consensus 41 kAMi~Cq~CGAFCHDDCIgps 61 (69)
T PF13922_consen 41 KAMIMCQGCGAFCHDDCIGPS 61 (69)
T ss_pred HHHHHHhhccchhccccccHH
Confidence 359999999999999999997
No 206
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=23.04 E-value=56 Score=34.21 Aligned_cols=40 Identities=23% Similarity=0.483 Sum_probs=29.2
Q ss_pred cccccccccccc--cc-----cceeecCCCCcccHhHHHhhhccCCCCCCcc
Q 003132 22 FECGRCGICMDV--VI-----DRGVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (845)
Q Consensus 22 sEd~~CpICLE~--f~-----d~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR 66 (845)
..++.|-||-+. +. .......|+..||..|... ..||.|-
T Consensus 150 ~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred hCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 346789999863 11 1256778999999999763 5699995
No 207
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=22.90 E-value=57 Score=42.01 Aligned_cols=53 Identities=19% Similarity=0.515 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 122 D~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
..+.|.|||..... ..+-+.-+.|..|.-..+..|+..- ..+|.-.||+|...
T Consensus 14 ~~~~c~iCGd~vg~--~~~Ge~FVAC~eC~fpvCr~cyeye---~~~g~~~cp~c~t~ 66 (1044)
T PLN02915 14 DAKTCRVCGDEVGV--KEDGQPFVACHVCGFPVCKPCYEYE---RSEGNQCCPQCNTR 66 (1044)
T ss_pred CcchhhccccccCc--CCCCCEEEEeccCCCccccchhhhh---hhcCCccCCccCCc
Confidence 56779999765433 3344567999999999999999655 56688899999887
No 208
>PLN02195 cellulose synthase A
Probab=22.73 E-value=56 Score=41.80 Aligned_cols=53 Identities=21% Similarity=0.416 Sum_probs=40.5
Q ss_pred CCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 122 D~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
..+.|.+||+.... +.+-+.-+.|..|.-..+..|+.-- ..+|.=.||.|...
T Consensus 5 ~~~~c~~cgd~~~~--~~~g~~fvaC~eC~~pvCrpCyeye---r~eg~q~CpqCkt~ 57 (977)
T PLN02195 5 GAPICATCGEEVGV--DSNGEAFVACHECSYPLCKACLEYE---IKEGRKVCLRCGGP 57 (977)
T ss_pred CCccceecccccCc--CCCCCeEEEeccCCCccccchhhhh---hhcCCccCCccCCc
Confidence 35679999765433 3344467999999999999999654 56789999999887
No 209
>PLN02189 cellulose synthase
Probab=22.71 E-value=58 Score=41.93 Aligned_cols=53 Identities=26% Similarity=0.561 Sum_probs=40.1
Q ss_pred CCCCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 003132 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (845)
Q Consensus 122 D~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vPegdW~CP~Cr~~ 179 (845)
.++.|.+||..... +.+-+.-+.|..|.-..+..|+.-- ..+|.-.||.|...
T Consensus 33 ~~~~C~iCgd~vg~--~~~g~~fvaC~~C~fpvCr~Cyeye---r~eg~q~CpqCkt~ 85 (1040)
T PLN02189 33 DGQVCEICGDEIGL--TVDGDLFVACNECGFPVCRPCYEYE---RREGTQNCPQCKTR 85 (1040)
T ss_pred cCccccccccccCc--CCCCCEEEeeccCCCccccchhhhh---hhcCCccCcccCCc
Confidence 45689999755432 2333467899999999999999654 56688999999888
No 210
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=22.58 E-value=19 Score=44.25 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=19.0
Q ss_pred CCCccccccccCCCCCCCCCCcccCCcCCCCCCC
Q 003132 149 SCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVPQ 182 (845)
Q Consensus 149 sCDraYH~~CLgPpl~~vPegdW~CP~Cr~~~~~ 182 (845)
.|.+.|+..|+.... ..-.--||.|-..|+.
T Consensus 660 kC~H~FC~~Cvq~r~---etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 660 KCGHVFCEECVQTRY---ETRQRKCPKCNAAFGA 690 (698)
T ss_pred hcchHHHHHHHHHHH---HHhcCCCCCCCCCCCc
Confidence 565555555555542 2346679999888543
No 211
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=22.56 E-value=57 Score=29.40 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCCccccCCCCccccccCCCCccccccccC
Q 003132 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVG 160 (845)
Q Consensus 122 D~~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLg 160 (845)
+...|.+|+.... +..+.++ -|+..||..|..
T Consensus 77 ~~~~C~vC~k~l~-----~~~f~~~--p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLG-----NSVFVVF--PCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCC-----CceEEEe--CCCeEEeccccc
Confidence 4567999976532 2334444 445889999974
No 212
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=22.53 E-value=18 Score=40.93 Aligned_cols=51 Identities=27% Similarity=0.576 Sum_probs=35.7
Q ss_pred CCCCCCCCCCccccCCCCccccccCCCCccccccccCCCCCCCC-----CCcccCCcCCCC
Q 003132 124 DGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTC-----EDTWLCPRCVAE 179 (845)
Q Consensus 124 ~~C~ICgGs~~~~dddned~mLlCDsCDraYH~~CLgPpl~~vP-----egdW~CP~Cr~~ 179 (845)
..|..||... .+..++++|+.|..|||.+|+.+...... ...++|+.|...
T Consensus 240 ~~~~~cg~~~-----~~~~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~~~~~~c~~~~~~ 295 (345)
T KOG1632|consen 240 LICDPCGLSD-----ANKKFEICCDLCESWFHGDCVQIFEARKRLNEIRNEVYKCPHCTVL 295 (345)
T ss_pred ccccccCcch-----HHHHHHHHHHHHHHHhcccccccccchhhhhhhhccceecCceeec
Confidence 4577775331 12257899999999999999998732111 234899999874
No 213
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=21.50 E-value=50 Score=37.46 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=34.1
Q ss_pred ccccccccccc--cceeecCCCCcccHhHHHhhhcc---CCCCCCccCc
Q 003132 25 GRCGICMDVVI--DRGVLDCCQHWFCFACIDNWSTI---TNLCPLCQGE 68 (845)
Q Consensus 25 ~~CpICLE~f~--d~~iL~~CgHtFC~sCI~~Wlk~---snsCPlCR~~ 68 (845)
+.||+-.+.-. ++++...|||+.-..-+....++ ...||.|...
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 57998777543 56777779999999999887654 5679999754
No 214
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=21.39 E-value=46 Score=27.62 Aligned_cols=37 Identities=19% Similarity=0.462 Sum_probs=22.7
Q ss_pred cccccccccccccceeecCCCCcccHhHHHhhhc--cCCCCCCccCc
Q 003132 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWST--ITNLCPLCQGE 68 (845)
Q Consensus 24 d~~CpICLE~f~d~~iL~~CgHtFC~sCI~~Wlk--~snsCPlCR~~ 68 (845)
.+.||.|...+... .+..-|...-.. ....||+|...
T Consensus 2 ~f~CP~C~~~~~~~--------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSES--------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHH--------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 47899999954331 233445554332 35679999764
No 215
>COG1773 Rubredoxin [Energy production and conversion]
Probab=21.36 E-value=63 Score=28.08 Aligned_cols=11 Identities=45% Similarity=1.443 Sum_probs=9.4
Q ss_pred CcccCCcCCCC
Q 003132 169 DTWLCPRCVAE 179 (845)
Q Consensus 169 gdW~CP~Cr~~ 179 (845)
.+|.||.|-..
T Consensus 35 d~w~CP~Cg~~ 45 (55)
T COG1773 35 DDWVCPECGVG 45 (55)
T ss_pred CccCCCCCCCC
Confidence 68999999865
No 216
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=21.23 E-value=73 Score=36.25 Aligned_cols=52 Identities=21% Similarity=0.434 Sum_probs=34.5
Q ss_pred ccCccccccccccccccc--------c----------eeecCCCCcccHhHHHhhhcc---------CCCCCCccCccc
Q 003132 19 LLNFECGRCGICMDVVID--------R----------GVLDCCQHWFCFACIDNWSTI---------TNLCPLCQGEFQ 70 (845)
Q Consensus 19 ssssEd~~CpICLE~f~d--------~----------~iL~~CgHtFC~sCI~~Wlk~---------snsCPlCR~~f~ 70 (845)
.....+..||||+..-.- + -...+|+|..-..=..-|+.. ...||.|-..+.
T Consensus 336 ~~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 336 NTGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 344557899999986310 0 123469998777778888754 456999976543
No 217
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=20.78 E-value=31 Score=41.76 Aligned_cols=41 Identities=20% Similarity=0.494 Sum_probs=27.0
Q ss_pred ccccccccccc--ccc-----ceeecCCCCcccHhHHHhhhccCCCCCCcc
Q 003132 23 ECGRCGICMDV--VID-----RGVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (845)
Q Consensus 23 Ed~~CpICLE~--f~d-----~~iL~~CgHtFC~sCI~~Wlk~snsCPlCR 66 (845)
....|.||... +.. -..+..|++.||..|... ....||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 45678888432 111 145667999999999753 344499993
No 218
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=20.47 E-value=71 Score=27.99 Aligned_cols=43 Identities=23% Similarity=0.590 Sum_probs=26.8
Q ss_pred cccccccccccc---eeecCCCCcccHhHHHhhhccCCCCCCccCccc
Q 003132 26 RCGICMDVVIDR---GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (845)
Q Consensus 26 ~CpICLE~f~d~---~iL~~CgHtFC~sCI~~Wlk~snsCPlCR~~f~ 70 (845)
.|-.|-..+... +.+-+=..+||..|...-+ ...||.|...|.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 455566655321 2221123479999998754 567999988764
No 219
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=20.18 E-value=52 Score=30.46 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=23.5
Q ss_pred CCCCCCCCCCccccCCCCccccccCC--CCccccccccCCC
Q 003132 124 DGCKIRSGSMVAEESSNLDTSIACDS--CDLWYHAFCVGFD 162 (845)
Q Consensus 124 ~~C~ICgGs~~~~dddned~mLlCDs--CDraYH~~CLgPp 162 (845)
..|.+|+.. .+..+-|.. |...||..|....
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHC
Confidence 468999533 245788987 9999999997543
No 220
>PRK14873 primosome assembly protein PriA; Provisional
Probab=20.05 E-value=75 Score=39.08 Aligned_cols=10 Identities=50% Similarity=1.590 Sum_probs=8.4
Q ss_pred cccCCcCCCC
Q 003132 170 TWLCPRCVAE 179 (845)
Q Consensus 170 dW~CP~Cr~~ 179 (845)
.|.||.|-..
T Consensus 422 p~~Cp~Cgs~ 431 (665)
T PRK14873 422 DWRCPRCGSD 431 (665)
T ss_pred CccCCCCcCC
Confidence 6889999776
Done!