Query 003135
Match_columns 845
No_of_seqs 247 out of 601
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 17:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1991 Nuclear transport rece 100.0 8E-120 2E-124 1043.7 16.1 677 12-823 248-982 (1010)
2 COG5656 SXM1 Importin, protein 100.0 1.4E-95 3E-100 815.9 19.4 652 12-823 247-952 (970)
3 KOG1992 Nuclear export recepto 100.0 3.4E-61 7.4E-66 546.0 13.8 576 13-715 253-871 (960)
4 PF08506 Cse1: Cse1; InterPro 100.0 3.2E-46 6.9E-51 415.1 -4.4 259 12-320 101-370 (370)
5 PF03378 CAS_CSE1: CAS/CSE pro 100.0 8.1E-34 1.7E-38 321.8 5.3 310 324-717 15-351 (435)
6 KOG2274 Predicted importin 9 [ 99.9 1.2E-24 2.6E-29 251.3 21.6 558 19-692 242-836 (1005)
7 COG5657 CSE1 CAS/CSE protein i 99.9 1.5E-22 3.2E-27 235.1 17.9 536 18-690 252-834 (947)
8 KOG1993 Nuclear transport rece 99.8 2.2E-21 4.8E-26 221.4 11.7 465 97-690 370-864 (978)
9 KOG2023 Nuclear transport rece 99.4 2.1E-13 4.6E-18 154.3 5.3 310 42-414 250-594 (885)
10 KOG2171 Karyopherin (importin) 99.2 3.8E-11 8.2E-16 144.5 12.2 293 25-385 224-526 (1075)
11 KOG1241 Karyopherin (importin) 97.8 5.5E-05 1.2E-09 88.6 9.4 283 12-373 212-540 (859)
12 KOG1991 Nuclear transport rece 97.2 0.021 4.6E-07 69.6 19.8 114 264-384 430-556 (1010)
13 COG5215 KAP95 Karyopherin (imp 97.1 0.0034 7.5E-08 71.9 11.0 282 12-372 216-538 (858)
14 KOG2022 Nuclear transport rece 96.3 0.053 1.1E-06 65.4 14.4 292 41-393 328-650 (982)
15 KOG1832 HIV-1 Vpr-binding prot 95.8 0.0044 9.5E-08 73.8 2.0 22 148-171 677-698 (1516)
16 PF10446 DUF2457: Protein of u 95.3 0.0094 2E-07 66.9 2.4 8 790-797 120-128 (458)
17 KOG2171 Karyopherin (importin) 95.3 0.027 5.8E-07 69.7 6.4 180 221-413 402-596 (1075)
18 KOG1824 TATA-binding protein-i 94.6 0.12 2.6E-06 62.8 9.2 130 248-384 172-307 (1233)
19 PF13513 HEAT_EZ: HEAT-like re 94.2 0.02 4.4E-07 46.1 1.1 52 266-323 1-55 (55)
20 KOG2023 Nuclear transport rece 94.1 0.2 4.4E-06 58.9 9.2 173 221-413 368-548 (885)
21 KOG2274 Predicted importin 9 [ 92.6 13 0.00028 46.0 21.1 88 247-342 488-581 (1005)
22 PF04931 DNA_pol_phi: DNA poly 92.5 0.1 2.3E-06 65.0 4.0 24 626-649 537-560 (784)
23 PF08167 RIX1: rRNA processing 92.4 0.18 4E-06 50.6 4.9 126 250-383 25-163 (165)
24 PF12717 Cnd1: non-SMC mitotic 91.6 0.24 5.3E-06 50.2 4.8 90 265-365 1-90 (178)
25 PF12348 CLASP_N: CLASP N term 91.5 0.96 2.1E-05 47.3 9.4 180 220-414 19-209 (228)
26 PF01602 Adaptin_N: Adaptin N 91.0 0.5 1.1E-05 55.8 7.5 131 249-398 78-210 (526)
27 PF10508 Proteasom_PSMB: Prote 91.0 0.91 2E-05 53.8 9.5 105 248-363 36-148 (503)
28 PF12719 Cnd3: Nuclear condens 90.9 3.8 8.3E-05 45.0 13.8 71 246-325 23-93 (298)
29 PF04931 DNA_pol_phi: DNA poly 89.3 0.28 6.1E-06 61.2 3.6 31 334-364 325-355 (784)
30 KOG1241 Karyopherin (importin) 88.9 13 0.00029 45.1 16.5 159 225-386 423-607 (859)
31 KOG1832 HIV-1 Vpr-binding prot 88.3 0.16 3.4E-06 61.3 0.3 19 774-792 1475-1493(1516)
32 PTZ00429 beta-adaptin; Provisi 87.5 2.8 6.1E-05 51.9 10.4 138 250-408 105-245 (746)
33 PF12717 Cnd1: non-SMC mitotic 87.4 2.1 4.6E-05 43.3 7.9 145 227-388 7-159 (178)
34 KOG1058 Vesicle coat complex C 87.1 4.2 9.1E-05 49.1 10.9 82 250-342 99-181 (948)
35 PF10363 DUF2435: Protein of u 86.8 0.75 1.6E-05 41.7 3.7 75 290-371 3-80 (92)
36 cd00020 ARM Armadillo/beta-cat 85.0 0.32 6.9E-06 44.6 0.4 94 221-324 20-119 (120)
37 PF12755 Vac14_Fab1_bd: Vacuol 84.9 0.46 1E-05 43.4 1.4 58 285-348 22-81 (97)
38 PF10508 Proteasom_PSMB: Prote 84.3 10 0.00023 44.9 12.8 133 263-411 88-231 (503)
39 KOG0166 Karyopherin (importin) 82.7 0.69 1.5E-05 54.0 2.0 92 225-326 296-394 (514)
40 PF02985 HEAT: HEAT repeat; I 82.5 0.6 1.3E-05 33.1 0.9 30 291-326 1-30 (31)
41 COG5096 Vesicle coat complex, 81.9 2 4.3E-05 52.6 5.5 114 250-379 92-208 (757)
42 KOG1242 Protein containing ada 80.4 4.1 8.9E-05 48.2 7.1 148 221-384 267-424 (569)
43 PF13646 HEAT_2: HEAT repeats; 80.2 0.81 1.8E-05 39.9 1.1 48 263-323 11-58 (88)
44 PF01602 Adaptin_N: Adaptin N 80.0 1.8 4E-05 51.0 4.4 84 251-343 115-200 (526)
45 PF12755 Vac14_Fab1_bd: Vacuol 78.4 1.8 3.9E-05 39.6 2.8 90 225-324 3-95 (97)
46 COG5215 KAP95 Karyopherin (imp 78.0 4.8 0.0001 47.2 6.5 178 223-413 423-629 (858)
47 KOG1824 TATA-binding protein-i 76.7 4.9 0.00011 49.7 6.4 158 221-386 492-662 (1233)
48 KOG2021 Nuclear mRNA export fa 76.6 13 0.00028 45.2 9.7 118 219-342 451-583 (980)
49 KOG1248 Uncharacterized conser 76.5 5.9 0.00013 50.1 7.3 157 221-387 754-923 (1176)
50 KOG0213 Splicing factor 3b, su 76.1 18 0.00038 44.0 10.5 87 289-381 715-805 (1172)
51 PF13513 HEAT_EZ: HEAT-like re 74.6 1.4 3.1E-05 35.2 1.0 54 222-278 1-54 (55)
52 PF05918 API5: Apoptosis inhib 74.1 4 8.6E-05 48.5 4.8 91 265-364 35-126 (556)
53 PF14500 MMS19_N: Dos2-interac 71.3 19 0.0004 39.1 8.8 142 257-414 6-156 (262)
54 cd00020 ARM Armadillo/beta-cat 70.7 2.7 5.9E-05 38.2 2.0 59 263-327 18-80 (120)
55 KOG0943 Predicted ubiquitin-pr 70.0 1.7 3.7E-05 54.1 0.6 18 792-809 1792-1809(3015)
56 COG5181 HSH155 U2 snRNP splice 69.8 42 0.00091 40.1 11.4 90 251-348 522-617 (975)
57 KOG0213 Splicing factor 3b, su 69.7 76 0.0016 38.9 13.7 233 221-513 896-1141(1172)
58 KOG2025 Chromosome condensatio 68.5 1.7E+02 0.0037 35.9 16.2 106 245-363 81-189 (892)
59 PF13646 HEAT_2: HEAT repeats; 67.0 4.8 0.0001 34.9 2.7 76 221-321 13-88 (88)
60 KOG1999 RNA polymerase II tran 64.8 3.3 7.1E-05 51.2 1.5 15 823-837 124-138 (1024)
61 KOG1059 Vesicle coat complex A 62.3 5.9 0.00013 47.7 3.0 151 231-410 129-282 (877)
62 KOG0943 Predicted ubiquitin-pr 60.3 3.8 8.2E-05 51.3 1.0 19 13-31 790-808 (3015)
63 KOG1060 Vesicle coat complex A 60.1 13 0.00028 45.4 5.2 127 263-411 119-246 (968)
64 KOG2081 Nuclear transport regu 59.9 11 0.00024 44.3 4.6 134 221-368 402-541 (559)
65 KOG1242 Protein containing ada 56.9 62 0.0013 38.7 10.0 171 221-413 69-247 (569)
66 KOG1999 RNA polymerase II tran 55.4 3.9 8.5E-05 50.6 0.0 14 822-836 120-133 (1024)
67 KOG1240 Protein kinase contain 54.7 17 0.00037 46.3 5.2 72 265-342 436-517 (1431)
68 KOG0262 RNA polymerase I, larg 53.5 30 0.00065 44.3 7.0 15 289-303 697-711 (1640)
69 PF08064 UME: UME (NUC010) dom 51.9 34 0.00073 31.8 5.6 78 329-415 5-87 (107)
70 PRK09687 putative lyase; Provi 51.8 18 0.0004 39.5 4.5 79 221-323 141-219 (280)
71 KOG1248 Uncharacterized conser 51.2 1.2E+02 0.0027 38.9 11.8 65 254-325 657-726 (1176)
72 PF04078 Rcd1: Cell differenti 50.5 8.2 0.00018 41.5 1.5 166 200-391 43-220 (262)
73 PTZ00415 transmission-blocking 50.5 8 0.00017 50.5 1.6 9 795-803 201-209 (2849)
74 PF04147 Nop14: Nop14-like fam 49.6 11 0.00024 47.6 2.6 8 827-834 446-453 (840)
75 KOG2038 CAATT-binding transcri 47.2 12 0.00025 45.5 2.2 71 263-340 315-386 (988)
76 KOG1992 Nuclear export recepto 46.8 2E+02 0.0043 35.9 12.1 52 264-325 17-68 (960)
77 KOG2076 RNA polymerase III tra 46.1 20 0.00044 44.3 4.0 47 788-834 93-146 (895)
78 KOG3064 RNA-binding nuclear pr 45.4 18 0.0004 38.4 3.0 20 698-717 174-193 (303)
79 KOG0166 Karyopherin (importin) 42.3 31 0.00067 40.7 4.6 78 244-327 99-183 (514)
80 KOG0127 Nucleolar protein fibr 42.2 17 0.00038 42.4 2.5 9 677-685 167-175 (678)
81 PF12348 CLASP_N: CLASP N term 40.2 45 0.00097 34.7 5.1 91 225-326 70-161 (228)
82 KOG0211 Protein phosphatase 2A 40.1 13 0.00027 46.2 1.0 92 221-325 570-664 (759)
83 smart00802 UME Domain in UVSB 39.8 74 0.0016 29.7 5.9 79 328-415 4-87 (107)
84 KOG0212 Uncharacterized conser 38.1 1.3E+02 0.0028 35.9 8.5 71 287-363 81-157 (675)
85 KOG1061 Vesicle coat complex A 37.8 39 0.00085 41.3 4.6 119 250-384 86-211 (734)
86 PRK09687 putative lyase; Provi 36.3 67 0.0015 35.1 5.9 99 221-345 104-202 (280)
87 COG5064 SRP1 Karyopherin (impo 36.2 11 0.00025 41.7 -0.2 67 257-331 334-404 (526)
88 PF10274 ParcG: Parkin co-regu 36.2 21 0.00046 36.5 1.8 88 288-381 36-130 (183)
89 PF02724 CDC45: CDC45-like pro 35.3 22 0.00048 43.3 2.1 7 573-579 10-16 (622)
90 PF13324 GCIP: Grap2 and cycli 35.1 45 0.00097 36.3 4.2 18 707-724 132-149 (275)
91 KOG1993 Nuclear transport rece 34.8 1.3E+02 0.0029 37.3 8.2 115 226-345 587-709 (978)
92 PF04889 Cwf_Cwc_15: Cwf15/Cwc 34.7 33 0.00071 36.8 3.0 12 824-835 231-242 (244)
93 cd08050 TAF6 TATA Binding Prot 34.0 89 0.0019 35.2 6.5 93 310-408 231-337 (343)
94 KOG2141 Protein involved in hi 33.3 33 0.00071 41.6 3.0 9 675-683 150-158 (822)
95 PTZ00429 beta-adaptin; Provisi 32.7 94 0.002 38.9 6.9 57 263-326 151-209 (746)
96 PF04826 Arm_2: Armadillo-like 31.4 32 0.0007 37.1 2.4 74 263-342 24-104 (254)
97 KOG0915 Uncharacterized conser 29.7 1E+02 0.0022 40.8 6.4 154 220-386 969-1183(1702)
98 PF04826 Arm_2: Armadillo-like 29.3 1.7E+02 0.0037 31.6 7.4 110 220-337 25-140 (254)
99 PF03378 CAS_CSE1: CAS/CSE pro 28.8 1.1E+02 0.0023 35.8 6.2 117 288-414 24-149 (435)
100 KOG1943 Beta-tubulin folding c 28.2 4.3E+02 0.0094 34.1 11.3 80 32-122 53-141 (1133)
101 PF04147 Nop14: Nop14-like fam 27.8 26 0.00056 44.4 1.0 6 805-810 446-451 (840)
102 PF12054 DUF3535: Domain of un 26.7 8.8E+02 0.019 28.4 13.2 71 269-345 104-178 (441)
103 PF10521 DUF2454: Protein of u 26.6 99 0.0021 33.8 5.1 98 220-325 87-203 (282)
104 PF13251 DUF4042: Domain of un 26.3 91 0.002 32.0 4.4 17 310-326 54-70 (182)
105 PF03344 Daxx: Daxx Family; I 26.2 22 0.00048 43.8 0.0 16 488-503 239-254 (713)
106 PF08767 CRM1_C: CRM1 C termin 26.0 2E+02 0.0043 32.1 7.5 63 351-413 89-151 (319)
107 KOG1189 Global transcriptional 26.0 41 0.00089 41.1 2.1 18 42-59 102-119 (960)
108 COG5240 SEC21 Vesicle coat com 25.8 3.2E+02 0.007 32.9 9.1 104 273-384 285-406 (898)
109 PF05285 SDA1: SDA1; InterPro 25.3 77 0.0017 35.5 4.0 19 671-690 11-29 (324)
110 KOG4364 Chromatin assembly fac 25.2 36 0.00079 40.8 1.5 18 802-819 610-627 (811)
111 KOG1062 Vesicle coat complex A 25.1 1.2E+02 0.0026 37.6 5.7 67 249-326 106-172 (866)
112 KOG2213 Apoptosis inhibitor 5/ 25.1 55 0.0012 37.2 2.7 63 272-342 44-106 (460)
113 PHA02608 67 prohead core prote 24.4 53 0.0012 28.6 1.9 8 706-713 19-26 (80)
114 KOG0212 Uncharacterized conser 24.4 1.3E+02 0.0029 35.8 5.7 48 254-303 254-304 (675)
115 KOG1949 Uncharacterized conser 24.4 2.3E+02 0.005 34.8 7.7 162 274-503 152-326 (1005)
116 COG5209 RCD1 Uncharacterized p 24.3 41 0.00089 35.5 1.5 170 201-392 94-271 (315)
117 PF10363 DUF2435: Protein of u 24.0 41 0.00089 30.4 1.3 63 255-325 8-72 (92)
118 KOG3064 RNA-binding nuclear pr 23.1 43 0.00093 35.7 1.4 9 705-713 184-192 (303)
119 KOG1060 Vesicle coat complex A 22.5 47 0.001 40.8 1.8 82 254-344 392-475 (968)
120 PF05327 RRN3: RNA polymerase 22.2 1.2E+02 0.0027 36.5 5.2 14 798-811 304-317 (563)
121 PF00514 Arm: Armadillo/beta-c 21.5 41 0.00089 25.0 0.7 29 290-324 12-40 (41)
122 KOG3241 Uncharacterized conser 21.2 55 0.0012 32.9 1.7 6 676-681 131-136 (227)
123 KOG3036 Protein involved in ce 20.9 1.3E+02 0.0028 32.4 4.4 165 201-391 73-249 (293)
124 KOG1967 DNA repair/transcripti 20.8 1.4E+02 0.003 37.6 5.2 88 288-383 907-1003(1030)
125 KOG2160 Armadillo/beta-catenin 20.8 74 0.0016 35.7 2.7 99 220-327 95-198 (342)
126 PF12460 MMS19_C: RNAPII trans 20.7 1.6E+02 0.0035 34.0 5.7 150 224-381 246-412 (415)
127 KOG3130 Uncharacterized conser 20.6 48 0.001 37.5 1.2 10 801-810 366-375 (514)
128 PF03115 Astro_capsid: Astrovi 20.2 34 0.00074 42.5 0.0 25 350-374 319-344 (787)
No 1
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-120 Score=1043.70 Aligned_cols=677 Identities=21% Similarity=0.325 Sum_probs=562.8
Q ss_pred CccccceeeeccCcceeehhhHHHhhhcc--------------cccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhh
Q 003135 12 NTVKDNLLRFKTGKRGLLIFSALVTRHRK--------------FSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLA 77 (845)
Q Consensus 12 ~~~~~~~~~~K~kKwa~~il~rl~~Ry~~--------------~~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~ 77 (845)
++.|..+|||||||||++|++|+|+||++ |..+|+|.|++.+++++.+ |.. +.|++||+++++
T Consensus 248 ~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~--~~~-~~yls~rvl~~~ 324 (1010)
T KOG1991|consen 248 PEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQ--WRQ-QLYLSDRVLYYL 324 (1010)
T ss_pred hhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHh-cccCCHHHHHHH
Confidence 78899999999999999999999999997 4678899999999999999 666 899999999999
Q ss_pred hHHHHhhhhcCCCceeecchhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchh
Q 003135 78 FDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLL 157 (845)
Q Consensus 78 l~fL~~~v~~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL 157 (845)
++|+++|++++.+|++++||+..|++++|||.||+|++|+|+||+||+||||+++|. ++|.+|||.||.+||
T Consensus 325 l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di--------~ed~~sp~~Aa~~~l 396 (1010)
T KOG1991|consen 325 LNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDI--------FEDGYSPDTAALDFL 396 (1010)
T ss_pred HHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCch--------hcccCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999997 899999999999999
Q ss_pred eeeeecCCCCCCCCCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHH
Q 003135 158 GVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQE 237 (845)
Q Consensus 158 ~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~ 237 (845)
.++ ++||+|+ +++ +++. |+.++|++|...+.+ .+++|+|||||+++|+|++
T Consensus 397 ~~~-----------------~~KR~ke-----~l~-k~l~--F~~~Il~~~~~~~~~----~~~~rqkdGAL~~vgsl~~ 447 (1010)
T KOG1991|consen 397 TTL-----------------VSKRGKE-----TLP-KILS--FIVDILTRYKEASPP----NKNPRQKDGALRMVGSLAS 447 (1010)
T ss_pred HHH-----------------HHhcchh-----hhh-hHHH--HHHHHHHhhcccCCC----ccChhhhhhHHHHHHHHHH
Confidence 995 9999888 577 5888 899999999877543 4689999999999999999
Q ss_pred HHhhhc--hhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcc-c-ccchhhHHHHHHHHHHhhcCCCCCccccee
Q 003135 238 FLREQK--SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-L-PEDISADVYSSLLKALQMLDKGDTSCYPVR 313 (845)
Q Consensus 238 ~l~~~~--~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l-~~~~l~~i~~~ll~~L~~~~~~~~~~lpVr 313 (845)
.|.++. ++.+|.|+.+||+|+|+ |+.|||||||||++++|++. | ++.++.++++++.+||.+++ ++|||
T Consensus 448 ~L~K~s~~~~~mE~flv~hVfP~f~--s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~-----~lPV~ 520 (1010)
T KOG1991|consen 448 ILLKKSPYKSQMEYFLVNHVFPEFQ--SPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDN-----ELPVR 520 (1010)
T ss_pred HHccCCchHHHHHHHHHHHhhHhhc--CchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCC-----cCchh
Confidence 998742 35679999999999999 89999999999999999987 7 67889999999999999432 39999
Q ss_pred eccchhhhhhhccC-----CCCCCchhhHHHHhhccCccccchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhc
Q 003135 314 ASAAGAIVGLLEND-----YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHM 388 (845)
Q Consensus 314 v~AA~Al~~~l~~~-----~l~p~i~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~ 388 (845)
|+||.||+.|+.++ +++|+++++||+||+ |+++. |||.|..+|+.+|+.|+|+++|||++||++|+++|+|++
T Consensus 521 VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~-L~ne~-End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l 598 (1010)
T KOG1991|consen 521 VEAALALQSFISNQEQADEKVSAHVPPIMQELLK-LSNEV-ENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVL 598 (1010)
T ss_pred hHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHH-HHHhc-chhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHH
Confidence 99999999999864 699999999999999 89999 999999999999999999999999999999999999997
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhhhhhHhhhhhhccccccchhhhHHHHHHHHHHHHHhhhcccccccccCCCCCccc
Q 003135 389 HPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCID 468 (845)
Q Consensus 389 ~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~d~~~d~~~~~~~~~~~~ail~ti~tll~~~~~~~~~~~~~s~~~~p~~~~ 468 (845)
....+ +++. +++..++++| +|+||+|+| .|+++.|+++.
T Consensus 599 ~~~~~-------------------------~~~~-~ddk~iaA~G---iL~Ti~Til------------~s~e~~p~vl~ 637 (1010)
T KOG1991|consen 599 QTSED-------------------------EDES-DDDKAIAASG---ILRTISTIL------------LSLENHPEVLK 637 (1010)
T ss_pred hccCC-------------------------CCcc-chHHHHHHHH---HHHHHHHHH------------HHHhccHHHHH
Confidence 75211 0010 1111233444 699999999 99999999999
Q ss_pred chhHHHHHHhhhccchhhHHHhhhhhHHHHHHHhh------------hhcccccccC---CCchHHHHHHHHhccccccc
Q 003135 469 DSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------GDWHAWEETE---DLSVFDCIKEIVNLHSKYEL 533 (845)
Q Consensus 469 ~le~~l~p~~~~i~~~~~~l~~~v~ef~~~~~~ll------------~~W~~~~~~~---~~~~~dy~~el~~~~~~~~L 533 (845)
++|.+++|++.++ |++++.|||.++++++ .||.+|+.+. ..+++|||++|++ +|
T Consensus 638 ~le~~~l~vi~~i------L~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~-----~l 706 (1010)
T KOG1991|consen 638 QLEPIVLPVIGFI------LKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMP-----AL 706 (1010)
T ss_pred HHHHHHHHHHHHH------HHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHH-----HH
Confidence 9999999999999 9999999999999999 7999999997 6789999999999 99
Q ss_pred cccccccCCCCCCCCCCchhHhhhhhHHHHHHHhcCCccccc--ccchhhhh-----hcCCCCCcccccccchhhhhhhh
Q 003135 534 KNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWR--ACSCVHTL-----LHVPKYSFETEGVKQSLTISFSC 606 (845)
Q Consensus 534 ~nfi~~g~~~~~~~~~~~~~i~~i~~~~~s~~~~~y~~~~~~--~~~~~~~l-----~~v~~~~~~~~~~~~~~~~~~~~ 606 (845)
+||++||++.+..+|.|++.+++||++.+++... ...+. +|..++.+ |.+++| +|.|++
T Consensus 707 ~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~---~D~d~~~a~kLle~iiL~~kg~~dq~-----------iplf~~ 772 (1010)
T KOG1991|consen 707 HNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENG---EDSDCESACKLLEVIILNCKGLLDQY-----------IPLFLE 772 (1010)
T ss_pred hhheeeCchhhhccchHHHHHHHHHHHHHcCCCC---chHHHHHHHHHHHHHHHHhcCcHhhH-----------hHHHHH
Confidence 9999999999999999999999999955543321 22233 33335544 567777 999999
Q ss_pred hHhhhhHhhccCCCCchhHHHHhhhccccchhhhHhhhhhcccC--CCeehhhhHHHhhhcCCCCCCcccchhHHHHHHH
Q 003135 607 AAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDED--GGFALWGSALAFLCSSSLEPRLSLESEIKLAVLT 684 (845)
Q Consensus 607 ~al~rl~~~~~~~~~~~~~~i~vi~~~~~~~p~~~l~~L~~~~~--~~f~~W~~~l~~~~~~~~~~~~~r~~D~Kl~iLg 684 (845)
+++.|++.. .++..+++++++|+++|+||||..|+++|++.|. .||+.||+.+ +.++++||||+||||
T Consensus 773 ~a~~~l~~~-~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~---------~~~~~~HDkKlcvL~ 842 (1010)
T KOG1991|consen 773 LALSRLTRE-VETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFI---------NQFKKVHDKKLCVLG 842 (1010)
T ss_pred HHHHHHhcc-ccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHH---------HHHHhhhhHHHHHHH
Confidence 999999863 5678999999999999999999999999999996 8999999999 788889999999999
Q ss_pred HHHHHHHHh--cCCC-CCCccc---HHHHHHHHHHHHhhhhhhcccccCCCCchhhccccCCCCCCCCCCCCCCccchhh
Q 003135 685 LAKVVERLL--GLGN-PGSSLL---QDCYASLMEAAVQLKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEE 758 (845)
Q Consensus 685 L~sLl~~~~--~l~~-~~~~il---~~~~~~L~~a~~~~~e~~ke~~~~~~~d~~~~ded~d~~d~d~d~~~~d~de~~e 758 (845)
|++|+.+++ .+.. ...++. ..++.+||+|++.|.+.++|+++++++++.+++| +.. +|+||+++
T Consensus 843 l~tli~l~~~~~~~~e~l~~l~~~lv~L~~~Lp~ala~ra~~~ee~~~e~~~~~~~~~e---~~~-------~d~dD~d~ 912 (1010)
T KOG1991|consen 843 LLTLISLGQDPQLPSEVLGQLGPALVELLLSLPEALAERAQVEEEDSEEGEEEDDDEEE---DFI-------DDEDDIDE 912 (1010)
T ss_pred HHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchh---hcc-------Cccccccc
Confidence 999999853 2211 122343 4449999999999999888865532211111111 111 12233334
Q ss_pred hHHHHHHHHHHHHhhcccCcccccCCccc--ccccccc--ccccccchhhHHHHHHHhh-hhhhhccCCC
Q 003135 759 TEEEFLERYAKAAVNLENNTLVEEGDVED--QEHDIEL--GSLDEVDQLKVVASSIERY-HNVIMQGQTL 823 (845)
Q Consensus 759 ~~~~yLe~l~~~a~~~~~~~~~~~~~~~d--~~~e~~l--~~lD~v~~~~~~~~~~~~~-~~~~~~~~~~ 823 (845)
++++|++.+++.+..-.....+|||+|+| +++|||+ ||||.||+|++|+++|... |+..-|.|.|
T Consensus 913 ~d~d~~~~~~~~~~~~~~~~~~ddd~d~~~~~~~ed~~f~t~LD~VD~f~~f~~~i~~lq~~d~~~yq~l 982 (1010)
T KOG1991|consen 913 DDQDYLDEYGELALEKEDSLDDDDDFDEDELDLEEDELFETPLDQVDPFQLFKEAITNLQSSDAVRYQKL 982 (1010)
T ss_pred cchhHHHhhccccccccccccccccccchhccccccccccCcccccchHHHHHHHHHhhhccChHHHHHH
Confidence 44467777776443322211223333333 4556665 9999999999999999754 4444454444
No 2
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-95 Score=815.86 Aligned_cols=652 Identities=17% Similarity=0.178 Sum_probs=539.7
Q ss_pred CccccceeeeccCcceeehhhHHHhhhccc------------ccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhhhH
Q 003135 12 NTVKDNLLRFKTGKRGLLIFSALVTRHRKF------------SDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFD 79 (845)
Q Consensus 12 ~~~~~~~~~~K~kKwa~~il~rl~~Ry~~~------------~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~ 79 (845)
+..|+.++|.||||||+.++||+|+||++. +.+++|.|++.++++++. |.+++.|++|+++|++..
T Consensus 247 pevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~--wgqgqLWlsd~~LYfi~~ 324 (970)
T COG5656 247 PEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEE--WGQGQLWLSDIELYFIDF 324 (970)
T ss_pred hhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcCCeecchHHHHHHHH
Confidence 678999999999999999999999999972 233889999999999999 899999999999999999
Q ss_pred HHHhhhhcCCCceeecchhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchhee
Q 003135 80 VISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGV 159 (845)
Q Consensus 80 fL~~~v~~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~ 159 (845)
|+..|+..+.+|++++||++-|++++|||.+|++++++|+||+||+|||||.+|. +++.+||..||..|+..
T Consensus 325 Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df--------~d~g~spdlaal~fl~~ 396 (970)
T COG5656 325 FVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDF--------FDNGLSPDLAALFFLII 396 (970)
T ss_pred HHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcch--------hcCCCChhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 78899999999999998
Q ss_pred eeecCCCCCCCCCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHH
Q 003135 160 ISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFL 239 (845)
Q Consensus 160 L~~~~~~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l 239 (845)
+ ..||||. |++ .++. |+..+|++|.+.|. ..+|++++||||+++.++.+.+
T Consensus 397 ~-----------------~sKrke~-----Tfq-giLs--f~~sil~qsaa~ps----n~dnarq~egalr~lasi~s~i 447 (970)
T COG5656 397 S-----------------KSKRKEE-----TFQ-GILS--FLLSILGQSAATPS----NIDNARQAEGALRLLASIKSFI 447 (970)
T ss_pred H-----------------hcccchh-----hhh-hHHH--HHHHHHhcccCCCC----ccccHHHHhhHHHHHHHHHHHh
Confidence 4 7788876 344 3444 78889999876653 3579999999999999999977
Q ss_pred hhhch---hhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhccc-ccchhhHHHHHHHHHHhhcCCCCCcccceeec
Q 003135 240 REQKS---EFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRAS 315 (845)
Q Consensus 240 ~~~~~---~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~ 315 (845)
++ .+ ..++.|+.+||+|.|+ ++++|||+|||.++++|..-+ +...+.++|+++++||++.. +||+++
T Consensus 448 tk-~sp~an~me~fiv~hv~P~f~--s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~------lpv~ie 518 (970)
T COG5656 448 TK-MSPAANVMEYFIVNHVIPAFR--SNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNH------LPVMIE 518 (970)
T ss_pred cc-CchHHHHHHHHHHHHhhHhhc--CcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCC------cchhhh
Confidence 65 33 3458999999999999 899999999999999995556 56779999999999999854 999999
Q ss_pred cchhhhhhhccC----CCCCCchhhHHHHhhccCccccchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCC
Q 003135 316 AAGAIVGLLEND----YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPS 391 (845)
Q Consensus 316 AA~Al~~~l~~~----~l~p~i~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~ 391 (845)
||.||+.|+.++ .+..|++++||+|++ |+|+. |.|.|..+|+.+|+.|+++++|||++|+.+|+++|+|++.+.
T Consensus 519 AalAlq~fi~~~q~h~k~sahVp~tmekLLs-LSn~f-eiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l 596 (970)
T COG5656 519 AALALQFFIFNEQSHEKFSAHVPETMEKLLS-LSNTF-EIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSL 596 (970)
T ss_pred HHHHHHHHHhchhhhHHHHhhhhHHHHHHHH-hcccc-cchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999864 678899999999999 99999 999999999999999999999999999999999999997765
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhHhhhhhhccccccchhhhH---HHHHHHHHHHHHhhhcccccccccCCCCCccc
Q 003135 392 SEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAA---IAKAFSALLQQAWLTHIQPLECEVSAPPSCID 468 (845)
Q Consensus 392 ~~~~~~~~~~~f~~l~~~~~~~~~~~~d~~~d~~~~~~~~~~~~a---il~ti~tll~~~~~~~~~~~~~s~~~~p~~~~ 468 (845)
.++ + +| ..+...+|+|| +|+|++|++ .|+++.|.+++
T Consensus 597 ~en---------------------s-~d------~~s~vDDKqmaasGiL~T~~smi------------LSlen~p~vLk 636 (970)
T COG5656 597 LEN---------------------S-SD------TSSVVDDKQMAASGILRTIESMI------------LSLENRPLVLK 636 (970)
T ss_pred HcC---------------------C-cc------ccccccHHHHHHHHHHHHHHHHH------------HhcccchHHHH
Confidence 543 1 11 11123466666 899999999 99999999999
Q ss_pred chhHHHHHHhhhccchhhHHHhhhhhHHHHHHHhh------------hhcccccccC---CCch-HHHHHHHHhcccccc
Q 003135 469 DSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------GDWHAWEETE---DLSV-FDCIKEIVNLHSKYE 532 (845)
Q Consensus 469 ~le~~l~p~~~~i~~~~~~l~~~v~ef~~~~~~ll------------~~W~~~~~~~---~~~~-~dy~~el~~~~~~~~ 532 (845)
.+++.++|++.+| +.+++.|||.|+++++ .||.+||.++ +..+ .+|+++..+ .
T Consensus 637 ~le~slypvi~Fi------lkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~-----a 705 (970)
T COG5656 637 YLEVSLYPVISFI------LKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVAD-----A 705 (970)
T ss_pred HHHHHHHHHHHHH------HhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHH-----H
Confidence 9999999999999 9999999999999999 7999999987 2222 499999999 9
Q ss_pred ccccccccCCCCCCCCCCchhHhhhhh-HHHHHHHhcCCcccccccch--hhhh-hcCCCCCcccccccchhhhhhhhhH
Q 003135 533 LKNFIVRQMPPPPAPPVPPQSIIEGIG-AFLSEAILQYPSATWRACSC--VHTL-LHVPKYSFETEGVKQSLTISFSCAA 608 (845)
Q Consensus 533 L~nfi~~g~~~~~~~~~~~~~i~~i~~-~~~s~~~~~y~~~~~~~~~~--~~~l-~~v~~~~~~~~~~~~~~~~~~~~~a 608 (845)
|+|||.||+.+|.+++.|.+.+++|++ .+.++.. ...|+..+| ++.+ +++.+ +.+..++|-|+..+
T Consensus 706 l~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n----~l~D~~~vc~i~e~l~Ln~rd------~Ll~qy~plfi~va 775 (970)
T COG5656 706 LDNFITYGKTEFMDAGIYGSICSEISKLCLCSEEN----FLEDFIGVCRIIESLILNIRD------ELLSQYLPLFISVA 775 (970)
T ss_pred HHHHHHhCccccccccchhHHHHHHHHHHHcchhh----hHHHHHHHHHHHHHHHHHccc------hhHHhhhHHHHHHH
Confidence 999999999999999999999999998 6666655 445666666 5554 33332 12233499899888
Q ss_pred hhhhHhhccCCCCchhHHHHhhhccccchhhhHhhhhhcccC--CCeehhhhHHHhhhcCCCCCCcccchhHHHHHHHHH
Q 003135 609 FSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILKKDED--GGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLA 686 (845)
Q Consensus 609 l~rl~~~~~~~~~~~~~~i~vi~~~~~~~p~~~l~~L~~~~~--~~f~~W~~~l~~~~~~~~~~~~~r~~D~Kl~iLgL~ 686 (845)
-+.+...... ..+.+..+++|++|++++|..|+|+|++.|. .||+.||+.+ |+|+|+|||||+++++.
T Consensus 776 gs~l~~~dEl-g~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~i---------pkfkrvhdkKLsvlaIl 845 (970)
T COG5656 776 GSGLKMIDEL-GPASVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFSQI---------PKFKRVHDKKLSVLAIL 845 (970)
T ss_pred hhhhhccccc-cchhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhcC---------cchhhhhhhHhHHHHHH
Confidence 7666543222 3788999999999999999999999999997 8999999998 99999999999999999
Q ss_pred HHHHHHh---cCCCCCC---cccHHHHHHHHHHHHhhhhhhcccccCCCCchhhccccCCCCCCCCCCCCCCccchhhhH
Q 003135 687 KVVERLL---GLGNPGS---SLLQDCYASLMEAAVQLKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEETE 760 (845)
Q Consensus 687 sLl~~~~---~l~~~~~---~il~~~~~~L~~a~~~~~e~~ke~~~~~~~d~~~~ded~d~~d~d~d~~~~d~de~~e~~ 760 (845)
+++..+. ..+..|+ +++..+..+||+|+++|. |+.++++... + +-.
T Consensus 846 tii~l~~v~~~~e~lv~nLg~vlv~l~~sLPeAir~ra---ke~d~e~f~e----~---------------------dlt 897 (970)
T COG5656 846 TIIRLQEVGALPELLVHNLGEVLVALVTSLPEAIRLRA---KEKDDEDFPE----P---------------------DLT 897 (970)
T ss_pred HHHHhcccccchhhhhhHHHHHHHHHHHhhHHHHHHHH---hhcccCCCCC----c---------------------ccc
Confidence 9998772 2222333 455666899999999998 4444321100 0 011
Q ss_pred HHHHHHHHHHHhhcccCcccccCCcccccccccc--ccccccchhhHHHHHHHhh-hhhhhccCCC
Q 003135 761 EEFLERYAKAAVNLENNTLVEEGDVEDQEHDIEL--GSLDEVDQLKVVASSIERY-HNVIMQGQTL 823 (845)
Q Consensus 761 ~~yLe~l~~~a~~~~~~~~~~~~~~~d~~~e~~l--~~lD~v~~~~~~~~~~~~~-~~~~~~~~~~ 823 (845)
.||.| +.+| . |..+.+ .++|||+ +.||.||||+.|++++-+. |....+.|.+
T Consensus 898 ~ey~e--------~vD~-~-D~~etf-ileEDplfeT~LDqvdpf~~f~ef~~nLq~~s~~~yekI 952 (970)
T COG5656 898 TEYDE--------CVDA-S-DISETF-ILEEDPLFETELDQVDPFGYFSEFLSNLQPASGTYYEKI 952 (970)
T ss_pred hhhhc--------cccc-c-chhhhh-hhcccchhhhhhhhcchHHHHHHHHHhCCCCCchhHHHH
Confidence 12222 2221 1 122222 2788888 9999999999999999654 3344444433
No 3
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-61 Score=545.99 Aligned_cols=576 Identities=16% Similarity=0.168 Sum_probs=472.4
Q ss_pred ccccceeeeccCcceeehhhHHHhhhcccccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhhcCCCce
Q 003135 13 TVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWR 92 (845)
Q Consensus 13 ~~~~~~~~~K~kKwa~~il~rl~~Ry~~~~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~~~~~~~ 92 (845)
++.+....-|.|--+-.|++.|.+||.+.+++|+|+|++++|+++...+ ....+|.+++.+++||+.+++.+.+-.
T Consensus 253 ~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s----~~~kyD~Lvs~Al~FLt~V~~r~~y~~ 328 (960)
T KOG1992|consen 253 DEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTS----PDTKYDYLVSKALQFLTSVSRRPHYAE 328 (960)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcC----CCccHHHHHHHHHHHHHHHHhhhhhHh
Confidence 4445566677777888999999999999999999999999999998753 667799999999999999998877766
Q ss_pred ee--cchhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchheeeeecCCCCCCC
Q 003135 93 LV--SPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGT 170 (845)
Q Consensus 93 ll--~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~L~~~~~~~~~~ 170 (845)
+| ...+.+|++.||+|+++++++|+|+|||||.|||||+++ ++|.+|||++|++|+++|
T Consensus 329 ~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlE---------GsDvdTRRR~a~dlvrgL---------- 389 (960)
T KOG1992|consen 329 LFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLE---------GSDVDTRRRAAIDLVRGL---------- 389 (960)
T ss_pred hhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcc---------cCCcchhHHHHHHHHHHH----------
Confidence 77 457999999999999999999999999999999999999 589999999999999996
Q ss_pred CCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhhc------h
Q 003135 171 PSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQK------S 244 (845)
Q Consensus 171 ~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~~------~ 244 (845)
|++++..++. +++. +++.+|++|..+| +.|||.||.+++++.+++.+..+++ +
T Consensus 390 -------~~~fe~~vt~-------v~~~-~v~~~l~~y~~nP------S~nWk~kd~aiyL~talaik~~t~~~Gvtstn 448 (960)
T KOG1992|consen 390 -------CKNFEGQVTG-------VFSS-EVQRLLDQYSKNP------SGNWKKKDRAIYLVTALAIKGQTAKHGVTSTN 448 (960)
T ss_pred -------HHHhcchhHH-------HHHH-HHHHHHHHhccCC------CccccccchhhhhhHHHHhhcchhhcceeecc
Confidence 7777533322 2221 5889999998776 4689999999999999998865532 2
Q ss_pred hh--HHHHHhhccccceee-e-ehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhh
Q 003135 245 EF--TANLVRSRVLPLYSV-S-VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAI 320 (845)
Q Consensus 245 ~~--~e~fl~~~VlP~l~~-~-s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al 320 (845)
+. +..||.++|+|+|.+ + .++|+|||.|++++..||++++++.+..+++.+++.|+.+. .+|+.|||.|+
T Consensus 449 ~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s------~vvhsYAA~ai 522 (960)
T KOG1992|consen 449 ELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAES------RVVHSYAAIAI 522 (960)
T ss_pred ccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcc------hHHHHHHHHHH
Confidence 22 378999999999985 2 68999999999999999999999999999999999999877 99999999999
Q ss_pred hhhhcc-----------CCCCCCchhhHHHHhhccCccc-cchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhc
Q 003135 321 VGLLEN-----------DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHM 388 (845)
Q Consensus 321 ~~~l~~-----------~~l~p~i~~llq~Ll~~l~~e~-~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~ 388 (845)
+.++.- ..++|++..+++.|++.++... .||+++|++++|++..-.+.+.||++.++.+|.+...+..
T Consensus 523 Ekil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~ 602 (960)
T KOG1992|consen 523 EKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVS 602 (960)
T ss_pred HhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHh
Confidence 999861 2689999999999998887766 7999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhhhhhhHhhhhhhccccccchhhhHHHHHHHHHHHHHhhhcccccccccCCCCCccc
Q 003135 389 HPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCID 468 (845)
Q Consensus 389 ~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~d~~~d~~~~~~~~~~~~ail~ti~tll~~~~~~~~~~~~~s~~~~p~~~~ 468 (845)
++|.+| +|+||+|+++|++.+ .+....|+.+.
T Consensus 603 KNPs~P--~fnHYLFEsi~~li~----------------------------------------------~t~~~~~~~vs 634 (960)
T KOG1992|consen 603 KNPSNP--QFNHYLFESIGLLIR----------------------------------------------KTCKANPSAVS 634 (960)
T ss_pred cCCCCc--hhHHHHHHHHHHHHH----------------------------------------------HHhccCchHHH
Confidence 988885 999998777776554 22345677778
Q ss_pred chhHHHHHHhhhccchhhHHHhhhhhHHHHHHHhhhhcccccccCCCchHHHHHHHHhc---------ccccc-----cc
Q 003135 469 DSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNL---------HSKYE-----LK 534 (845)
Q Consensus 469 ~le~~l~p~~~~i~~~~~~l~~~v~ef~~~~~~ll~~W~~~~~~~~~~~~dy~~el~~~---------~~~~~-----L~ 534 (845)
+++..|+|+++.| |.+|+.||++|++++++.-- +...+..++.+..++++ .||+| |.
T Consensus 635 ~~e~aL~p~fq~I------l~eDI~EfiPYvfQlla~lv---e~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 635 SLEEALFPVFQTI------LSEDIQEFIPYVFQLLAVLV---EHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH---HhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence 8899999999999 99999999999999996432 22333456666666665 67777 89
Q ss_pred ccccccCCCCCCCCCCchhHhhhhhHHHHHHHhcCCcccccccch-hhhhh--cCCCCCcccccccchhhhhhhhhHhhh
Q 003135 535 NFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSC-VHTLL--HVPKYSFETEGVKQSLTISFSCAAFSR 611 (845)
Q Consensus 535 nfi~~g~~~~~~~~~~~~~i~~i~~~~~s~~~~~y~~~~~~~~~~-~~~l~--~v~~~~~~~~~~~~~~~~~~~~~al~r 611 (845)
.|+.+|+..+.++ +.+..|+++++++++++..| +.++..... +..+. .+.+| +.++..+.++|
T Consensus 706 aflk~g~~~~~~~-~~l~~iLGifqkLiaSka~D--h~GF~LLn~i~~~~~~~~~~py-----------~k~i~~llf~R 771 (960)
T KOG1992|consen 706 AFLKTGSQIVEAA-DKLSGILGIFQKLIASKAND--HHGFYLLNTIIESIPPNELAPY-----------MKQIFGLLFQR 771 (960)
T ss_pred HHHhcCchhhccc-ccchhHHHHHHHHhcCcccc--hhHHHHHHHHHhcCCHhhhhHH-----------HHHHHHHHHHH
Confidence 9999999999855 46899999999999887755 444444443 33332 23455 99999999999
Q ss_pred hHhhccCC-CCchhHHHHhhhccccchhhhHhhhhhcccCCCeehhhhHHHhhhcCCCCCCcccchhHHHHHHHHHHHHH
Q 003135 612 FRAIQSKP-SSLWKPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVE 690 (845)
Q Consensus 612 l~~~~~~~-~~~~~~~i~vi~~~~~~~p~~~l~~L~~~~~~~f~~W~~~l~~~~~~~~~~~~~r~~D~Kl~iLgL~sLl~ 690 (845)
+++ +|| +..+..++++.+.++.++-....++.+.+|++.|+...+.+. .+..++.....|||++.+|.+++++
T Consensus 772 lqn--skT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ~~~fg~l~e~~i----i~~l~~i~~~~~rk~~avg~~~l~~ 845 (960)
T KOG1992|consen 772 LQN--SKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQPGMFGMLLENFI----IPELPKIILRVDRKIMAVGATGLLT 845 (960)
T ss_pred Hhc--cCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHHHHHHhc----cccchhhhhhhhHHHHHHHHhhhhh
Confidence 994 555 445556777777788888888999999999988876666542 2555888999999999999999999
Q ss_pred HHhcCC-CCCCcccHHHHHHHHHHHH
Q 003135 691 RLLGLG-NPGSSLLQDCYASLMEAAV 715 (845)
Q Consensus 691 ~~~~l~-~~~~~il~~~~~~L~~a~~ 715 (845)
..+.+. ..+.++|..++.++-....
T Consensus 846 e~~~~~d~~y~~l~~~ll~sii~lfe 871 (960)
T KOG1992|consen 846 ETPELLDQKYAKLWGPLLFSIIVLFE 871 (960)
T ss_pred hcHHhhhHHHHhhhhhHHHHHHHHHh
Confidence 877442 3455566655555444433
No 4
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=100.00 E-value=3.2e-46 Score=415.13 Aligned_cols=259 Identities=24% Similarity=0.291 Sum_probs=210.3
Q ss_pred CccccceeeeccCcceeehhhHHHhhhcccccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhhcCCCc
Q 003135 12 NTVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGW 91 (845)
Q Consensus 12 ~~~~~~~~~~K~kKwa~~il~rl~~Ry~~~~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~~~~~~ 91 (845)
.++.+..++||+|+|+..|++++.+||.+++++|+|+|++.+|++|.++ .. ....|.+++.+++||+.+++...++
T Consensus 101 ~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~--~~--~~~~D~lv~~al~FL~~v~~~~~~~ 176 (370)
T PF08506_consen 101 DDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKI--SQ--QPKYDILVSKALQFLSSVAESPHHK 176 (370)
T ss_dssp T-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC----S--SGGGHHHHHHHHHHHHHHHTSHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh--cccccHHHHHHHHHHHHHHcchhHH
Confidence 4455666899999999999999999999999999999999999999883 33 3446999999999999988765444
Q ss_pred eee--cchhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchheeeeecCCCCCC
Q 003135 92 RLV--SPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMG 169 (845)
Q Consensus 92 ~ll--~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~L~~~~~~~~~ 169 (845)
.++ +||+++||+++|||+||+|++|+|+||+||.|||||++| ++|.+|||+||++||++|
T Consensus 177 ~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e---------~sd~~TrR~AA~dfl~~L--------- 238 (370)
T PF08506_consen 177 NLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLE---------GSDSDTRRRAACDFLRSL--------- 238 (370)
T ss_dssp TTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSC---------SS---SHHHHHHHHHHHH---------
T ss_pred HHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhcc---------ccccCCcHHHHHHHHHHH---------
Confidence 466 689999999999999999999999999999999999999 478999999999999996
Q ss_pred CCCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhhc------
Q 003135 170 TPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQK------ 243 (845)
Q Consensus 170 ~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~~------ 243 (845)
+++|++.++. .+++ +|+++|++|.+++ ..+||.||||++++|+++.+..+.+
T Consensus 239 --------~~~~~~~v~~------i~~~--~i~~~l~~y~~~~------~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~ 296 (370)
T PF08506_consen 239 --------CKKFEKQVTS------ILMQ--YIQQLLQQYASNP------SNNWRSKDGALYLIGALASKGSTTKSGVTQT 296 (370)
T ss_dssp --------HHHHHHHHHH------HHHH--HHHHHHHHHHH-T------TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B
T ss_pred --------HHHHhHHHHH------HHHH--HHHHHHHHHhhCC------cccHHHHHHHHHHHHHHHhhhccccCCcccc
Confidence 8888876422 3445 7999999997754 3589999999999999998865422
Q ss_pred hhh--HHHHHhhccccceee-eehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhh
Q 003135 244 SEF--TANLVRSRVLPLYSV-SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAI 320 (845)
Q Consensus 244 ~~~--~e~fl~~~VlP~l~~-~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al 320 (845)
++. +++|+.+||+|+|+. .+.+|+|||||||++..|+++++++.+..+++.+++||++++ .+||+|||.||
T Consensus 297 ~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~------~vv~tyAA~~i 370 (370)
T PF08506_consen 297 NELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSS------YVVHTYAAIAI 370 (370)
T ss_dssp -TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-------HHHHHHHHHHH
T ss_pred cccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC------cchhhhhhhhC
Confidence 222 489999999999993 378999999999999999999999999999999999999987 99999999986
No 5
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=99.98 E-value=8.1e-34 Score=321.78 Aligned_cols=310 Identities=15% Similarity=0.145 Sum_probs=224.6
Q ss_pred hccCCCCCCchhhHHHHhhccCccc-cchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHH
Q 003135 324 LENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERG 402 (845)
Q Consensus 324 l~~~~l~p~i~~llq~Ll~~l~~e~-~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~ 402 (845)
+..+.+.|++.++|++|++.+.... .|||++|+|+||++...++.+.|++..++++|+.++..++++|.+ |+|+||+
T Consensus 15 ~~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsn--P~FnHyl 92 (435)
T PF03378_consen 15 FSKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSN--PRFNHYL 92 (435)
T ss_dssp S-GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-----HHHHHHH
T ss_pred ECHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCC--cchhhhH
Confidence 3445899999999999999886655 689999999999999999999999999999999999888888777 6999998
Q ss_pred HHHHHHHHHhhhhhhHhhhhhhccccccchhhhHHHHHHHHHHHHHhhhcccccccccCCCCCcccchhHHHHHHhhhcc
Q 003135 403 FAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVS 482 (845)
Q Consensus 403 f~~l~~~~~~~~~~~~d~~~d~~~~~~~~~~~~ail~ti~tll~~~~~~~~~~~~~s~~~~p~~~~~le~~l~p~~~~i~ 482 (845)
||++|++.+... ..+|+.+..+|+.++|+|..|
T Consensus 93 FEsi~~lir~~~----------------------------------------------~~~~~~v~~~E~~L~P~f~~I- 125 (435)
T PF03378_consen 93 FESIGALIRFVC----------------------------------------------EADPEAVSQFEEALFPPFQEI- 125 (435)
T ss_dssp HHHHHHHHHHS-----------------------------------------------GGGHH---HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcc----------------------------------------------CCChhHHHHHHHHHHHHHHHH-
Confidence 888888777432 124455678899999999999
Q ss_pred chhhHHHhhhhhHHHHHHHhhhh--------------cccccccCC--Cc-hHHHHHHHHhccccccccccccccCCCCC
Q 003135 483 ERNVIEELKLSELLLVWADLIGD--------------WHAWEETED--LS-VFDCIKEIVNLHSKYELKNFIVRQMPPPP 545 (845)
Q Consensus 483 ~~~~~l~~~v~ef~~~~~~ll~~--------------W~~~~~~~~--~~-~~dy~~el~~~~~~~~L~nfi~~g~~~~~ 545 (845)
|+++|.||++|+||+++. |.+|+.+.. .| -..+++.+++ .|.+||.+++..+.
T Consensus 126 -----Lq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvr-----LL~a~i~k~~~~i~ 195 (435)
T PF03378_consen 126 -----LQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVR-----LLQAYIKKDPSFIV 195 (435)
T ss_dssp -----HHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHH-----HHHHHHHHHGGG--
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHH-----HHHHHHHhCchhhc
Confidence 999999999999999932 222222210 00 0124555555 59999999999996
Q ss_pred CCCCCchhHhhhhhHHHHHHHhcCCcccccccch-hhhh--hcCCCCCcccccccchhhhhhhhhHhhhhHhhccCCCCc
Q 003135 546 APPVPPQSIIEGIGAFLSEAILQYPSATWRACSC-VHTL--LHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSL 622 (845)
Q Consensus 546 ~~~~~~~~i~~i~~~~~s~~~~~y~~~~~~~~~~-~~~l--~~v~~~~~~~~~~~~~~~~~~~~~al~rl~~~~~~~~~~ 622 (845)
++ ++++.++++|+++++++..| +.++.+... +..+ ..+.+| ++.|+.++++||++ +||..|
T Consensus 196 ~~-~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~y-----------l~~I~~lll~RLq~--skT~kf 259 (435)
T PF03378_consen 196 AN-NQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPY-----------LKQIFTLLLTRLQS--SKTEKF 259 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGG-----------HHHHHHHHHHHHHH--C--HHH
T ss_pred ch-hhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHH-----------HHHHHHHHHHHHhh--CCcHHH
Confidence 65 58999999999999888754 444444444 4444 245666 99999999999984 455444
Q ss_pred -hhHHHHhhhccccchhhhHhhhhhcccCCCee-----hhhhHHHhhhcCCCCCCcccchhHHHHHHHHHHHHHHHhcCC
Q 003135 623 -WKPVVLAISSCYLCYPAVVEGILKKDEDGGFA-----LWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLG 696 (845)
Q Consensus 623 -~~~~i~vi~~~~~~~p~~~l~~L~~~~~~~f~-----~W~~~l~~~~~~~~~~~~~r~~D~Kl~iLgL~sLl~~~~~l~ 696 (845)
+..++.+.+.+.+|+|+..++.+++.|+++|. .|+..+ +++.+.+|||+|++|++++|+..+.+.
T Consensus 260 ~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~---------~k~~~~~erKi~~vGltkLL~es~~~~ 330 (435)
T PF03378_consen 260 VKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDL---------QKVSGPIERKICAVGLTKLLCESPAFL 330 (435)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHG---------GG--SHHHHHHHHHHHHHHHHSSTTHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCch---------hhcCCcchhhHHHHHHHHHHhccHhhh
Confidence 45566666777889999999999999998774 455555 899999999999999999998655332
Q ss_pred CCCCcccHHHHHHHHHHHHhh
Q 003135 697 NPGSSLLQDCYASLMEAAVQL 717 (845)
Q Consensus 697 ~~~~~il~~~~~~L~~a~~~~ 717 (845)
..+.+.|..++.+|.+.+..-
T Consensus 331 ~~~~~~w~~ll~~Ll~ll~~p 351 (435)
T PF03378_consen 331 SEYSQLWPPLLEALLKLLERP 351 (435)
T ss_dssp HH-CHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHcCC
Confidence 236778888888888877743
No 6
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.93 E-value=1.2e-24 Score=251.32 Aligned_cols=558 Identities=16% Similarity=0.114 Sum_probs=366.7
Q ss_pred eeeccCcceeehhhHHHhhhcccccchhhHHHHHHHHHHhhc--------------c----cccchh-hHHHHHHHhhhH
Q 003135 19 LRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYS--------------A----NISKLD-FLQERIISLAFD 79 (845)
Q Consensus 19 ~~~K~kKwa~~il~rl~~Ry~~~~~~~~p~~l~~~l~ll~~~--------------~----~~~~~~-~lsd~~v~~~l~ 79 (845)
..|-.+--.++.++.++..+.+...+|+-.++..+|+++++. + +.+.+. ...+.++.++++
T Consensus 242 ~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~e 321 (1005)
T KOG2274|consen 242 SDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVE 321 (1005)
T ss_pred chHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHH
Confidence 445555566778888999999999999999999999988643 0 111122 234688999999
Q ss_pred HHHhhhhcCCCceeecchhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchhee
Q 003135 80 VISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGV 159 (845)
Q Consensus 80 fL~~~v~~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~ 159 (845)
|++.+++.....+-++..+..+++..| -+++++++++|.|..||++||.++.+. ++.|.++.+++..
T Consensus 322 F~s~i~t~~~~~~ti~~~l~~lI~~~v-~y~Qlseeqie~w~sD~~~fV~dEd~~------------~~~~~~~rd~~~~ 388 (1005)
T KOG2274|consen 322 FLSTIVTNRFLSKTIKKNLPELIYQLV-AYLQLSEEQIEVWTSDVNQFVADEDDG------------YTARISVRDLLLE 388 (1005)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHhhHHHHHHHhccHHHhhccCCCC------------chhhhhHHHHHHH
Confidence 999999987777777778888888875 478999999999999999999987762 5677777777776
Q ss_pred eeecCCCCCCCCCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHH
Q 003135 160 ISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFL 239 (845)
Q Consensus 160 L~~~~~~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l 239 (845)
++..+|-+...+-.. +..++-.. .=..|..+ ...|||..+++|.+.++...--
T Consensus 389 v~~~f~~~~i~~i~~--a~~~~~~e-------------------s~at~~~~------~~~~wk~qea~l~a~~~~~~~~ 441 (1005)
T KOG2274|consen 389 VITTFGNEGINPIQD--AAGRHFQE-------------------SQATYLFN------NESWWKIQEALLVAAESVRIDD 441 (1005)
T ss_pred HHHhccchhhhHHHH--HHHHHHHH-------------------HHHHHHhc------chHHHHHHHHHHHHHhhcccCc
Confidence 645455443322000 01011000 00111111 2469999999999999876110
Q ss_pred hhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcc--cccchhhHHHHHHHHHHhhcCCCCCcccceeeccc
Q 003135 240 REQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC--LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAA 317 (845)
Q Consensus 240 ~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~--l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA 317 (845)
. ..++ -..+...+.-.+.. +..|+|-+||.|++++|++. ..++.+..++...++.++... ..|||+.|.
T Consensus 442 ~--~dd~-l~~l~~~~~~~l~~-~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~-----~~~~ki~a~ 512 (1005)
T KOG2274|consen 442 A--NDDK-LIELTIMIDNGLVY-QESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDV-----PPPVKISAV 512 (1005)
T ss_pred c--hHHH-HHHHHHHHHhhccc-ccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC-----CCchhHHHH
Confidence 0 1111 12222222222332 57789999999999999998 478888899999999998776 389999999
Q ss_pred hhhhhhhccCCCCCCchhhHHHHhhccCccc-c-chhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCCh
Q 003135 318 GAIVGLLENDYMPPEWYPLLQVIVGRIGYED-E-ENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPW 395 (845)
Q Consensus 318 ~Al~~~l~~~~l~p~i~~llq~Ll~~l~~e~-~-e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~ 395 (845)
+|+..++....+.|..+.+|..|+. +.... + -+-.||.+|..+|..-.+.-..-...|+......|+++..+|--.
T Consensus 513 ~~~~~~~~~~vl~~~~p~ild~L~q-las~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~- 590 (1005)
T KOG2274|consen 513 RAFCGYCKVKVLLSLQPMILDGLLQ-LASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVA- 590 (1005)
T ss_pred HHHHhccCceeccccchHHHHHHHH-HcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHH-
Confidence 9999999888999999999999999 44433 1 144456666555554444444455778999999999998887432
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhhhhhccccccchhhhHHHHHHHHHHHHHhhhcccccccccCCCCCcccchhHHHH
Q 003135 396 PQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLR 475 (845)
Q Consensus 396 ~~~~~~~f~~l~~~~~~~~~~~~d~~~d~~~~~~~~~~~~ail~ti~tll~~~~~~~~~~~~~s~~~~p~~~~~le~~l~ 475 (845)
...+++|+.|.+...|. ..-|+.++.|+.+++++ ..-..++..+.-.-.++.
T Consensus 591 -~~~qd~f~el~q~~~~~-----------------g~m~e~~iPslisil~~----------~~~~~~~~l~~~aidvLt 642 (1005)
T KOG2274|consen 591 -SLAQDLFEELLQIAANY-----------------GPMQERLIPSLISVLQL----------NADKAPAGLCAIAIDVLT 642 (1005)
T ss_pred -HHHHHHHHHHHHHHHhh-----------------cchHHHHHHHHHHHHcC----------cccccCchhhHHHHHHHH
Confidence 55678899998866554 23455579999999942 111233444455556666
Q ss_pred HHhhhccchhhHHHhhhhhHHHHHHHhhhhcccccccC-CCchHHHHHHHHhccccccccccccccCCCCCCC---CCC-
Q 003135 476 SIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETE-DLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAP---PVP- 550 (845)
Q Consensus 476 p~~~~i~~~~~~l~~~v~ef~~~~~~ll~~W~~~~~~~-~~~~~dy~~el~~~~~~~~L~nfi~~g~~~~~~~---~~~- 550 (845)
-+++..+.+ |.+ .++.++|.-++.=. +| +.. +.|. .|.-+|..||+++++++.+- |.+
T Consensus 643 tvvr~tp~p---L~~---~l~~~~FpaVak~t----lHsdD~-----~tlQ--~~~EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 643 TVLRNTPSP---LPN---LLICYAFPAVAKIT----LHSDDH-----ETLQ--NATECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred HHHhcCCCC---ccH---HHHHHHhHHhHhhe----eecCCh-----HHHH--hHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence 677777666 544 35556655553211 12 110 1111 12236888888887777651 211
Q ss_pred chhHhhhhhHHHHHHHhcCCcccccccchhhhh-hcCCCCCcccccccchhhhhhhhhHhhhhHhhccCCCCchhHHHHh
Q 003135 551 PQSIIEGIGAFLSEAILQYPSATWRACSCVHTL-LHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLA 629 (845)
Q Consensus 551 ~~~i~~i~~~~~s~~~~~y~~~~~~~~~~~~~l-~~v~~~~~~~~~~~~~~~~~~~~~al~rl~~~~~~~~~~~~~~i~v 629 (845)
...|+.+...+++-...+ .....+...+.++ .|.+. ...+-+.+|+.+++.||+.. .+-++...++.|
T Consensus 706 ~~yImqV~sqLLdp~~sd--s~a~~VG~lV~tLit~a~~-------el~~n~d~IL~Avisrmq~a--e~lsviQsLi~V 774 (1005)
T KOG2274|consen 706 LWYIMQVLSQLLDPETSD--SAAAFVGPLVLTLITHASS-------ELGPNLDQILRAVISRLQQA--ETLSVIQSLIMV 774 (1005)
T ss_pred HHHHHHHHHHHcCCccch--hHHHHHhHHHHHHHHHHHH-------HhchhHHHHHHHHHHHHHHh--hhHHHHHHHHHH
Confidence 223444444444322211 1111122223333 23222 12223788999999999853 445666778888
Q ss_pred hhccccchhhhHhhhhhcc-cC------C-CeehhhhHHHhhhcCCCCCCcccchhHHHHHHHHHHHHHHH
Q 003135 630 ISSCYLCYPAVVEGILKKD-ED------G-GFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERL 692 (845)
Q Consensus 630 i~~~~~~~p~~~l~~L~~~-~~------~-~f~~W~~~l~~~~~~~~~~~~~r~~D~Kl~iLgL~sLl~~~ 692 (845)
++...+-+++.++++|.+. |. . ..+.|.+.- ..|-+.|++|+.+.++|++|.+.
T Consensus 775 fahL~~t~~~~~l~FL~Slp~~~g~~AlefVMteW~srq---------hl~~g~ye~kv~i~alc~al~~~ 836 (1005)
T KOG2274|consen 775 FAHLVHTDLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQ---------HLYFGEYEGKVSIKALCKALQHL 836 (1005)
T ss_pred HHHHhhCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhh---------hhhhhhhhchhhHHHHHHHHHhh
Confidence 8888899999999999993 33 1 248899876 78889999999999999999876
No 7
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.89 E-value=1.5e-22 Score=235.08 Aligned_cols=536 Identities=17% Similarity=0.152 Sum_probs=335.3
Q ss_pred eeeeccCcceeehhhHHHhhhcccccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhh--cCCCceeec
Q 003135 18 LLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLE--TGPGWRLVS 95 (845)
Q Consensus 18 ~~~~K~kKwa~~il~rl~~Ry~~~~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~--~~~~~~ll~ 95 (845)
.-..|.|.-...+++.|-+||..-+++++-.|++.+|++++..+ +..+.+.+++..+.++.++++ .+.+...+.
T Consensus 252 ~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit----~~~~~d~Lv~k~l~~l~~v~k~~irk~~e~l~ 327 (947)
T COG5657 252 CVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTIT----RPYIRDYLVSKSLTVLINVIKYPIRKTAEVLS 327 (947)
T ss_pred ceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhc----CccccchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 56789999999999999999999999999999999999999842 467889999999999999998 566666654
Q ss_pred c----hhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhh-hhhhhhhcchheeeeecCCCCCCC
Q 003135 96 P----HFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDL-FTARKSAINLLGVISVSKGPPMGT 170 (845)
Q Consensus 96 p----~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~-~s~R~AA~~lL~~L~~~~~~~~~~ 170 (845)
. -..++++.++.|+++++++|+|+|++||.||||..... |+ +..|..+.+.++.+
T Consensus 328 n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~----------dye~~vr~~~~~~l~~~---------- 387 (947)
T COG5657 328 NVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKT----------DYEVNVRPCIENELKDL---------- 387 (947)
T ss_pred HHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccc----------cchhhhhHHHHHHHHHH----------
Confidence 4 57889999999999999999999999999999965542 22 34577888877763
Q ss_pred CCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhhchhhHHHH
Q 003135 171 PSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANL 250 (845)
Q Consensus 171 ~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~~~~~~e~f 250 (845)
++.. + +.+.+ ++..++.++...| | .....+.+++++...|.-...+.. --+ +..|
T Consensus 388 ----------f~~~------~-~i~~~--~~~~~ie~~~t~P--~--~~d~~~~~~a~~a~~g~g~~av~~-~~~-~v~~ 442 (947)
T COG5657 388 ----------FDVF------G-RIAVG--HELTVIESEATTP--N--ILDEARQLFAAYASFGLGVEAVNR-MVD-FVKF 442 (947)
T ss_pred ----------HHHH------h-hHhHH--HHHHHHHHHhcCc--h--HHHHHHHHHHHHHHhhhHHHHHHH-HHH-HHHH
Confidence 2211 0 01222 3444555544333 1 244566666666666622222211 011 2679
Q ss_pred Hhhccccceee--eehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc---
Q 003135 251 VRSRVLPLYSV--SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE--- 325 (845)
Q Consensus 251 l~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~--- 325 (845)
+.+.+.|++.+ +-.++.+++|...++..++..++...+ ...+-|..+. .++.++||.....+++
T Consensus 443 ~~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~r~~l~~~~~-----~~~~fl~~~~------F~~yt~~~id~~~lLT~~~ 511 (947)
T COG5657 443 LGSIIYPDLLSPNEIIHLRILRSRIAYILTFRNQLDSSEL-----SESKFLASQF------FVNYTTACIDAVVLLTTRE 511 (947)
T ss_pred HHHhcCccccCcccCceeEEehhccchheechhhhhhhhh-----hhHHHHHHHH------HHHHHHHhhhhHHHHHHHH
Confidence 99999999984 235566667777777777777533221 1222222222 4444444444444433
Q ss_pred -------cCCCCC-CchhhHH----HHhhccCccc--cchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCC
Q 003135 326 -------NDYMPP-EWYPLLQ----VIVGRIGYED--EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPS 391 (845)
Q Consensus 326 -------~~~l~p-~i~~llq----~Ll~~l~~e~--~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~ 391 (845)
.-.+.+ +...+++ .+++.++... ++++++++++++++..-.+.++|.+.++++.|.+.+....++|
T Consensus 512 a~~t~~~~~n~~~~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knp 591 (947)
T COG5657 512 AYSTIFDDWNFSVCSKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNP 591 (947)
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCC
Confidence 112222 2233333 3334333322 5899999999999999999999999999999999988888887
Q ss_pred CCChHHHHHHHHHHHHHHHHhhhhhhHhhhhhhccccccchhhhHHHHHHHHHHHHHhhhcccccccccCCCCCcccchh
Q 003135 392 SEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSS 471 (845)
Q Consensus 392 ~~~~~~~~~~~f~~l~~~~~~~~~~~~d~~~d~~~~~~~~~~~~ail~ti~tll~~~~~~~~~~~~~s~~~~p~~~~~le 471 (845)
.+ |++.||.|+.+++++...+..- =.|+.+++ .
T Consensus 592 s~--p~~~h~~fe~I~al~~~~~~~~--------------------~~~ip~l~------------~------------- 624 (947)
T COG5657 592 SN--PQFAHYTFEDIGALVFLKSGMC--------------------EITIPTLV------------L------------- 624 (947)
T ss_pred cc--HHHHHHHHHHHHHHHHhhhccc--------------------ccchHHHH------------H-------------
Confidence 77 4999999999999886432111 12334444 1
Q ss_pred HHHHHHhhhccchhhHHHhhhhhHHHHHHHhhhhcc----c--ccccC-CCchHHHHHHHHhccccc-----cccccccc
Q 003135 472 MLLRSIILSVSERNVIEELKLSELLLVWADLIGDWH----A--WEETE-DLSVFDCIKEIVNLHSKY-----ELKNFIVR 539 (845)
Q Consensus 472 ~~l~p~~~~i~~~~~~l~~~v~ef~~~~~~ll~~W~----~--~~~~~-~~~~~dy~~el~~~~~~~-----~L~nfi~~ 539 (845)
.+.|.+.-+ +..++.||+++++++++--. . ++... ....+.--+++.+..+++ -++|++..
T Consensus 625 -~l~p~~~~l------~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v~~~l~q~~~~t~ll~~~~~I~~~~~Ll~~~~~~ 697 (947)
T COG5657 625 -ALVPEFPVL------LSEDATELWSYVLQLLSILPEHFSGDVLPSVVKILRQPSLATELLPTKLEILKSYRLLDNPILT 697 (947)
T ss_pred -hhCccchhh------hhhhHHHHHHHHHHHHhhcchhhcCCcCchHHHHHhcccCchHHHHHHHHHHHHHHHHHhhhhc
Confidence 222333333 55667777777777773210 0 01000 000000002233322222 38999999
Q ss_pred cCCCCCCCCCCchhHhhhhhHHHHHHHhcCCcccccccchhhhh---hcCCCCCcccccccchhhhhhhhhHhhhhHhhc
Q 003135 540 QMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTL---LHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQ 616 (845)
Q Consensus 540 g~~~~~~~~~~~~~i~~i~~~~~s~~~~~y~~~~~~~~~~~~~l---~~v~~~~~~~~~~~~~~~~~~~~~al~rl~~~~ 616 (845)
++..|.. ...+.++++++.+++....+ +.+...|.-++++ ....++ +..+.-.+++|+++
T Consensus 698 ~~~if~~--s~~~~vL~i~~~ll~~e~~~--~~~f~~~~~v~~l~~~~i~~~~-----------v~~i~~lll~rl~n-- 760 (947)
T COG5657 698 TGYIFKS--SGFQPVLGILQYLLGSEPHD--ALCFLNLTVVETLYLENIYEPY-----------VNLIFVLLLSRLKN-- 760 (947)
T ss_pred ccccccc--cchhhhHHHHHHHHhcchHH--HHHHhhHHHHHHhHHHHHHhhc-----------HHHHHHHHHHHhhc--
Confidence 9888877 34677899998777665533 4444444445544 235555 88888999999974
Q ss_pred cCCCCchhHHHHhhhcc-----ccchhhhHhhhhhcccCCCe-ehhhhHHHhhhcCCCCCCcccchhHHHHHHHHHHHHH
Q 003135 617 SKPSSLWKPVVLAISSC-----YLCYPAVVEGILKKDEDGGF-ALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVE 690 (845)
Q Consensus 617 ~~~~~~~~~~i~vi~~~-----~~~~p~~~l~~L~~~~~~~f-~~W~~~l~~~~~~~~~~~~~r~~D~Kl~iLgL~sLl~ 690 (845)
+++..+..-++.++.-- +-++++..+...++.+.+.| ..|..-+. ++++ .--..|||+.++|+.+++.
T Consensus 761 s~~~r~v~~~i~~fs~v~~k~~~t~~~dnlI~ki~q~k~i~i~~l~g~~Il-----~~~~-i~~~~drKi~~ig~snllr 834 (947)
T COG5657 761 SKTERFVIKIIHVFSLVSFKDSLTVGCDNLISKINQTKNILIVQLYGNWIL-----GFDE-IHDSKDRKIHLIGLSNLLR 834 (947)
T ss_pred ccchHHHHHhheeeEEechhhccccCChHHHHHHHHHHHHHHHHHHhceee-----ccch-hccHHHHHHHHHhHHhhhh
Confidence 34433333333222211 11345655555554443333 33333221 3334 6678999999999999984
No 8
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.2e-21 Score=221.44 Aligned_cols=465 Identities=14% Similarity=0.156 Sum_probs=301.0
Q ss_pred hhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchheeeeecCCCCCCCCCCCCc
Q 003135 97 HFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSS 176 (845)
Q Consensus 97 ~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~L~~~~~~~~~~~~~~~~ 176 (845)
-+..||..+|--++.++++|.|.|.+||++|+..+.-+ .| .|+.|.+|..+...+
T Consensus 370 rIt~lcd~Lvt~YflLt~~eLEeW~~dPE~~~~Eq~~~------dw---ey~lRPCaE~L~~~l---------------- 424 (978)
T KOG1993|consen 370 RITNLCDLLVTHYFLLTEEELEEWTQDPEGWVLEQSGG------DW---EYNLRPCAEKLYKDL---------------- 424 (978)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHhcChHHhhhhcccc------cc---eeccchhHHHHHHHH----------------
Confidence 36678888888899999999999999999999987653 13 689999999999985
Q ss_pred cchhhcccccccccccccccCCeeeeccccccCCCCCC-chhhhhhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhcc
Q 003135 177 VSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDA-NASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRV 255 (845)
Q Consensus 177 ~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~-~~~~~~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~V 255 (845)
..... + .+.|. +..++.+-++...+ +..+..+...|||++.++|..+..+.. .-++ ..+|.+..
T Consensus 425 -F~~ys-q----------llvP~-~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~-~~dF-~~Wl~~~l 489 (978)
T KOG1993|consen 425 -FDAYS-Q----------LLVPP-VLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSN-ILDF-DKWLQEAL 489 (978)
T ss_pred -HHHHH-H----------hhhHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHh-cCCH-HHHHHHhh
Confidence 33322 1 33332 33333221111111 112566889999999999988877654 3333 78999999
Q ss_pred ccceeee-ehhhhHhhhhhhHhhhhhcc-cccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc-----CC
Q 003135 256 LPLYSVS-VCLPYLVASANWILGELASC-LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-----DY 328 (845)
Q Consensus 256 lP~l~~~-s~~p~LrarA~~~l~~f~~~-l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~-----~~ 328 (845)
+|+++.+ ....++|.|..|++|+|.+. .+.+....+|.++++.|++.+ ++|||+.||.+++..+++ +.
T Consensus 490 lpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~-----D~vV~Ltt~~tlkl~vDD~nF~~ds 564 (978)
T KOG1993|consen 490 LPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQN-----DLVVRLTTARTLKLVVDDWNFSEDS 564 (978)
T ss_pred CHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccc-----cceeehHHHHHHHHhhhhccCChhh
Confidence 9999963 45669999999999999997 788888999999999999985 499999999999999984 46
Q ss_pred CCCCchhhHHHHhhccCccc--cchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Q 003135 329 MPPEWYPLLQVIVGRIGYED--EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAAL 406 (845)
Q Consensus 329 l~p~i~~llq~Ll~~l~~e~--~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l 406 (845)
+.|+++.+...+++++.... +..-.+..+|..++++.++.|+|++..+++-|-..+ +
T Consensus 565 Flp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LW-e-------------------- 623 (978)
T KOG1993|consen 565 FLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLW-E-------------------- 623 (978)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-h--------------------
Confidence 77888777766666543332 135558999999999999999999999988765553 1
Q ss_pred HHHHHhhhhhhHhhhhhhccccccchhhhHHHHHHHHHHHHHhhhcccccccccCCCCCcccchhHHHHHHhhhccchh-
Q 003135 407 ALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERN- 485 (845)
Q Consensus 407 ~~~~~~~~~~~~d~~~d~~~~~~~~~~~~ail~ti~tll~~~~~~~~~~~~~s~~~~p~~~~~le~~l~p~~~~i~~~~- 485 (845)
.+.. + .--..|++.|+..+++++.. . + ..+...++|+++...+++
T Consensus 624 --------~s~~--------e---~lLr~alL~~L~~lV~alg~-------q----S----~~~~~fL~pVIel~~D~~s 669 (978)
T KOG1993|consen 624 --------ESEE--------E---PLLRCALLATLRNLVNALGA-------Q----S----FEFYPFLYPVIELSTDPSS 669 (978)
T ss_pred --------hhcc--------C---cHHHHHHHHHHHHHHHHhcc-------C----C----ccchHHHHHHHHHhcCCCC
Confidence 1110 1 22334578888888854332 1 1 224568899999887664
Q ss_pred ---hHHHhhhhhHHHHHHHhhhhc--------ccccccC--CCchHHHHHHHHhccccccccccccccCCCCCCCCCCch
Q 003135 486 ---VIEELKLSELLLVWADLIGDW--------HAWEETE--DLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQ 552 (845)
Q Consensus 486 ---~~l~~~v~ef~~~~~~ll~~W--------~~~~~~~--~~~~~dy~~el~~~~~~~~L~nfi~~g~~~~~~~~~~~~ 552 (845)
++|..|- +.-|...+..- .+++.+. -+...+.+.-.+. .++.||.-+...|+++ |-.
T Consensus 670 P~hv~L~EDg---meLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~t~l~-----Ii~sYilLd~~~fl~~--y~~ 739 (978)
T KOG1993|consen 670 PEHVYLLEDG---MELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLPTVLM-----IISSYILLDNTVFLND--YAF 739 (978)
T ss_pred CceeehhhhH---HHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHHHHHH-----HHHHHHhhccHHHHHH--HHH
Confidence 3444333 33333333110 0111110 0112233333333 4677777766666654 555
Q ss_pred hHhhhhhHHHHHHHhcCCcccccccchhhhhhcCCCCCcccccccchhhhhhhhhHhhhhHhhccCCCCchhHHHHhhhc
Q 003135 553 SIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISS 632 (845)
Q Consensus 553 ~i~~i~~~~~s~~~~~y~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~al~rl~~~~~~~~~~~~~~i~vi~~ 632 (845)
.+++.+..++.+-.+ ...-.+|..++.+..+.+. .-..+.+.++..++..+-. +.+-..+.-..+.|+.-
T Consensus 740 ~i~k~~~~~l~dvr~---egl~avLkiveili~t~~i------l~~~~~~~~L~~lf~~I~~-~~~yP~~~~~yl~vvaR 809 (978)
T KOG1993|consen 740 GIFKKLNDLLDDVRN---EGLQAVLKIVEILIKTNPI------LGSLLFSPLLSRLFLSIAE-NDKYPYVMGEYLLVVAR 809 (978)
T ss_pred HHHHHHHHHHHHhhH---HHHHHHHHHHHHHHhhhHH------HHhhhcchhhHHHHHHHHh-CCCCchhHHHHHHHHHH
Confidence 555555533322211 1112233333333222211 0000122223333332211 12223344447777877
Q ss_pred cccchhhhHhhhhhcccC------CCeehhhhHHHhhhcCCCCCCcccchhHHHHHHHHHHHHH
Q 003135 633 CYLCYPAVVEGILKKDED------GGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVE 690 (845)
Q Consensus 633 ~~~~~p~~~l~~L~~~~~------~~f~~W~~~l~~~~~~~~~~~~~r~~D~Kl~iLgL~sLl~ 690 (845)
..+.||+....+++..+. ..+..|+... ++....-+||+.+||++||+.
T Consensus 810 i~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~---------~~I~~~k~rKl~~LalsSll~ 864 (978)
T KOG1993|consen 810 ISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLF---------DHINHPKDRKLNTLALSSLLR 864 (978)
T ss_pred HHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHc---------ccCCCHHHhhHHHHHHHHHhc
Confidence 889999999999988873 5679999988 888888999999999999985
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.1e-13 Score=154.26 Aligned_cols=310 Identities=17% Similarity=0.205 Sum_probs=212.3
Q ss_pred ccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhhcCCCceeecchhhhhhhhhccchhcccccccchhh
Q 003135 42 SDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWE 121 (845)
Q Consensus 42 ~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe 121 (845)
..+++++|++-+++..+.. ...+.--+.+|.....+++-....+.||+..|+-- .+-.|.+++.|+-+-+
T Consensus 250 l~phl~~IveyML~~tqd~---------dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPv-Ll~~M~Ysd~D~~LL~ 319 (885)
T KOG2023|consen 250 LVPHLDNIVEYMLQRTQDV---------DENVALEACEFWLALAEQPICKEVLQPYLDKLIPV-LLSGMVYSDDDIILLK 319 (885)
T ss_pred cccchHHHHHHHHHHccCc---------chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHH-HHccCccccccHHHhc
Confidence 4455566666666655431 34577788999999999998888999999999864 4789999999988887
Q ss_pred h-cHHHH-------HHh------------------cCCchhhhhhchhhhhhhhhhhhcchheeeeecCCCCCCCCCCCC
Q 003135 122 E-DADEY-------IRK------------------NFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCS 175 (845)
Q Consensus 122 ~-DP~EY-------Ir~------------------~~d~~~~~~~~~~~d~~s~R~AA~~lL~~L~~~~~~~~~~~~~~~ 175 (845)
+ +.++. ||- +.|-+.|+-++ +.| .+-|.++.-.|..|
T Consensus 320 ~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~-~~d-WNLRkCSAAaLDVL--------------- 382 (885)
T KOG2023|consen 320 NNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA-FSD-WNLRKCSAAALDVL--------------- 382 (885)
T ss_pred CccccccCCchhhhccchhhhchhccCccccccccccccccccccc-ccc-ccHhhccHHHHHHH---------------
Confidence 3 22222 220 00000000000 111 23666666666664
Q ss_pred ccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhcc
Q 003135 176 SVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRV 255 (845)
Q Consensus 176 ~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~V 255 (845)
..-+++. .+. .+.++|.+... .+.|+.||+...++|++|.--.+...+++ +-+.-|.
T Consensus 383 --anvf~~e----------lL~--~l~PlLk~~L~--------~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l 439 (885)
T KOG2023|consen 383 --ANVFGDE----------LLP--ILLPLLKEHLS--------SEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFL 439 (885)
T ss_pred --HHhhHHH----------HHH--HHHHHHHHHcC--------cchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHH
Confidence 2223333 222 23444544221 24799999999999999987654222222 1123333
Q ss_pred ccceeeeehhhhHhhhhhhHhhhhhcc-c---ccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc--CCC
Q 003135 256 LPLYSVSVCLPYLVASANWILGELASC-L---PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYM 329 (845)
Q Consensus 256 lP~l~~~s~~p~LrarA~~~l~~f~~~-l---~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~--~~l 329 (845)
++.+. ...|.+|.-+||.+|+|++. + +.+.+..+++++++++.|.+ --|+-.|+.|+..|.+. +.+
T Consensus 440 ~~~L~--DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N------K~VQEAAcsAfAtleE~A~~eL 511 (885)
T KOG2023|consen 440 LSLLD--DKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN------KKVQEAACSAFATLEEEAGEEL 511 (885)
T ss_pred HHHhc--cCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc------HHHHHHHHHHHHHHHHhccchh
Confidence 45566 68999999999999999997 3 34678999999999999998 67999999999999986 378
Q ss_pred CCCchhhHHHHhhccCccc-cchhHHHHHHHHHHhccccccc-c-chhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Q 003135 330 PPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVA-D-HIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAAL 406 (845)
Q Consensus 330 ~p~i~~llq~Ll~~l~~e~-~e~d~l~~~L~~iV~~~~e~l~-p-~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l 406 (845)
.|++.++|+.|+..++.-. ...-.|-.++.++.+..+..+- | |..-|+.-|++.+..+-.+..+-|| +++||
T Consensus 512 Vp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfP-----LLECl 586 (885)
T KOG2023|consen 512 VPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFP-----LLECL 586 (885)
T ss_pred HHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHH-----HHHHH
Confidence 9999999999999776543 2344577888888888877765 3 7788889999988776555555455 57889
Q ss_pred HHHHHhhh
Q 003135 407 ALMAQSWE 414 (845)
Q Consensus 407 ~~~~~~~~ 414 (845)
.+++.+.+
T Consensus 587 Ssia~AL~ 594 (885)
T KOG2023|consen 587 SSIASALG 594 (885)
T ss_pred HHHHHHHh
Confidence 88887663
No 10
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=3.8e-11 Score=144.51 Aligned_cols=293 Identities=17% Similarity=0.140 Sum_probs=195.3
Q ss_pred cceeehhhHHHhhhcccccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhhcCCCc-eeecchhhhhhh
Q 003135 25 KRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGW-RLVSPHFSVLLD 103 (845)
Q Consensus 25 Kwa~~il~rl~~Ry~~~~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~~~~~~-~ll~p~l~~Ll~ 103 (845)
|-++..+.-+..--++++.+++-.+++..+++..+.. +.+.+-+.+++||..+++..+.. |...+...+|+-
T Consensus 224 ~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~-------l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~ 296 (1075)
T KOG2171|consen 224 KSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKE-------LENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVP 296 (1075)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccc-------ccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHH
Confidence 3445555556666667788888888888888887632 46677788999999998873322 122222233322
Q ss_pred hhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchheeeeecCCCCCCCCCCCCccchhhcc
Q 003135 104 KAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKK 183 (845)
Q Consensus 104 ~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k 183 (845)
.+ +-++++.+.+ +||...+... -+|..||.++|...|-.| +++--+|
T Consensus 297 ~~---l~~mte~~~D------~ew~~~d~~d--------ed~~~~~~~~A~~~lDrl----------------A~~L~g~ 343 (1075)
T KOG2171|consen 297 VL---LAMMTEEEDD------DEWSNEDDLD--------EDDEETPYRAAEQALDRL----------------ALHLGGK 343 (1075)
T ss_pred HH---HHhcCCcccc------hhhccccccc--------cccccCcHHHHHHHHHHH----------------HhcCChh
Confidence 11 2244544332 4444422221 244578889999888886 3433334
Q ss_pred cccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeee
Q 003135 184 GEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSV 263 (845)
Q Consensus 184 ~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s 263 (845)
.+ .+ + +.+.+.++... .+|+.+.|+|++++.++.--.+.-.+.+.+ +..+|+|.++ .
T Consensus 344 ~v-----~p-~------~~~~l~~~l~S--------~~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~--D 400 (1075)
T KOG2171|consen 344 QV-----LP-P------LFEALEAMLQS--------TEWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLN--D 400 (1075)
T ss_pred he-----hH-H------HHHHHHHHhcC--------CCHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcC--C
Confidence 42 22 1 23333333322 379999999999999885433211112223 3468899999 7
Q ss_pred hhhhHhhhhhhHhhhhhcccccc----hhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc---CCCCCCchhh
Q 003135 264 CLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPL 336 (845)
Q Consensus 264 ~~p~LrarA~~~l~~f~~~l~~~----~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~---~~l~p~i~~l 336 (845)
|||.+|.-||..+|+++.-|.+. .-..+.++++..+.++. ...|+..||.|+-+|... +.+.||+..+
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~-----~~rV~ahAa~al~nf~E~~~~~~l~pYLd~l 475 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ-----NVRVQAHAAAALVNFSEECDKSILEPYLDGL 475 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC-----chHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 99999999999999999987554 23344456666666554 378999999999998874 4899999999
Q ss_pred HHHHhhccCc-cc-cchhHHHHHHHHHHhccccccccchhHHHHHHHHHHH
Q 003135 337 LQVIVGRIGY-ED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAIS 385 (845)
Q Consensus 337 lq~Ll~~l~~-e~-~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~ 385 (845)
|+++|..|.+ .. .--+.++.++..+.+..++...||...++..|...+.
T Consensus 476 m~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~ 526 (1075)
T KOG2171|consen 476 MEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQ 526 (1075)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHh
Confidence 9966664533 22 2356678899999999999999999999999887753
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=5.5e-05 Score=88.64 Aligned_cols=283 Identities=17% Similarity=0.225 Sum_probs=176.8
Q ss_pred CccccceeeeccCcc----------eeehhhHHHhhhcccccchhhH-HHHHHHHHHhhcccccchhhHHHHHHHhhhHH
Q 003135 12 NTVKDNLLRFKTGKR----------GLLIFSALVTRHRKFSDKLMPD-IMNSVLQIVKYSANISKLDFLQERIISLAFDV 80 (845)
Q Consensus 12 ~~~~~~~~~~K~kKw----------a~~il~rl~~Ry~~~~~~~~p~-~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~f 80 (845)
+.||++.-..-|--| |+++|+|+.+=|=+|..+||.+ +....++-..+. .|.+..++++|
T Consensus 212 E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~---------~deValQaiEF 282 (859)
T KOG1241|consen 212 EMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSD---------NDEVALQAIEF 282 (859)
T ss_pred HhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHH
Confidence 556665555544444 7899999999999998888865 556555555431 57888999999
Q ss_pred HHhhhhcCCC--------c-eeecc---h-hhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhh
Q 003135 81 ISHVLETGPG--------W-RLVSP---H-FSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLF 147 (845)
Q Consensus 81 L~~~v~~~~~--------~-~ll~p---~-l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~ 147 (845)
-++++..+-- - +-..| | ..+-+. .+.|.|- ++ +-+..|.+ .+|..
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~-~v~P~Ll------~~--------L~kqde~~-------d~DdW 340 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQ-DVVPVLL------EL--------LTKQDEDD-------DDDDW 340 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHh-HhhHHHH------HH--------HHhCCCCc-------ccccC
Confidence 9977763221 0 00111 1 112222 2345432 11 11111110 23446
Q ss_pred hhhhhhcchheeeeecCCCCCCCCCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHH
Q 003135 148 TARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFG 227 (845)
Q Consensus 148 s~R~AA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdg 227 (845)
+|-.||..-|.-+ .+--+ . .++. +|.+|+.+.-.+| +||.+|+
T Consensus 341 np~kAAg~CL~l~-----------------A~~~~-D---------~Iv~--~Vl~Fiee~i~~p--------dwr~rea 383 (859)
T KOG1241|consen 341 NPAKAAGVCLMLF-----------------AQCVG-D---------DIVP--HVLPFIEENIQNP--------DWRNREA 383 (859)
T ss_pred cHHHHHHHHHHHH-----------------HHHhc-c---------cchh--hhHHHHHHhcCCc--------chhhhhH
Confidence 8999999888764 21111 1 1444 5666776533332 7999999
Q ss_pred HHHHhhchHHHHhh-hchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhccc-----ccchhhHHHHHHHHHHhh
Q 003135 228 VLMAYGGLQEFLRE-QKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-----PEDISADVYSSLLKALQM 301 (845)
Q Consensus 228 aL~~ig~la~~l~~-~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-----~~~~l~~i~~~ll~~L~~ 301 (845)
+.+++|++=+.-.. +-.+++.+-+... +-... .+.-+.|-.|.|.+|+.++.+ +.+++..+++.++..|+|
T Consensus 384 avmAFGSIl~gp~~~~Lt~iV~qalp~i-i~lm~--D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D 460 (859)
T KOG1241|consen 384 AVMAFGSILEGPEPDKLTPIVIQALPSI-INLMS--DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND 460 (859)
T ss_pred HHHHHHhhhcCCchhhhhHHHhhhhHHH-HHHhc--CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh
Confidence 99999997533211 1123333333222 22233 467788888999999998863 566788888888898876
Q ss_pred cCCCCCcccceeeccchhhhhhhcc-----------CCCCCCchhhHHHHhhccCccc--cch---hHHHHHHHHHHhcc
Q 003135 302 LDKGDTSCYPVRASAAGAIVGLLEN-----------DYMPPEWYPLLQVIVGRIGYED--EEN---SILFELLSSVVGAA 365 (845)
Q Consensus 302 ~~~~~~~~lpVrv~AA~Al~~~l~~-----------~~l~p~i~~llq~Ll~~l~~e~--~e~---d~l~~~L~~iV~~~ 365 (845)
. +-|-.-++.|+..|.++ +...|+-..+++.|++ ..+.. +++ -....+|+++|..-
T Consensus 461 e-------Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~-~tdr~dgnqsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 461 E-------PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLK-VTDRADGNQSNLRSAAYEALMELIKNS 532 (859)
T ss_pred C-------chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHh-hccccccchhhHHHHHHHHHHHHHHcC
Confidence 5 67888889999998862 1345788899999999 54432 222 23678999999988
Q ss_pred ccccccch
Q 003135 366 NENVADHI 373 (845)
Q Consensus 366 ~e~l~p~a 373 (845)
.+.+.|..
T Consensus 533 t~~vy~~v 540 (859)
T KOG1241|consen 533 TDDVYPMV 540 (859)
T ss_pred cHHHHHHH
Confidence 88877643
No 12
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.021 Score=69.55 Aligned_cols=114 Identities=20% Similarity=0.180 Sum_probs=74.1
Q ss_pred hhhhHhhhhhhHhhhhhccc-ccchhhH-----HHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccC-CCCCCchhh
Q 003135 264 CLPYLVASANWILGELASCL-PEDISAD-----VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-YMPPEWYPL 336 (845)
Q Consensus 264 ~~p~LrarA~~~l~~f~~~l-~~~~l~~-----i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~-~l~p~i~~l 336 (845)
..|.-+--|..++|..++.+ .+..+.. +.++++..++++- --.|..||--+..|.+.+ .-...+..+
T Consensus 430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~------g~Lrarac~vl~~~~~~df~d~~~l~~a 503 (1010)
T KOG1991|consen 430 KNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY------GYLRARACWVLSQFSSIDFKDPNNLSEA 503 (1010)
T ss_pred cChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch------hHHHHHHHHHHHHHHhccCCChHHHHHH
Confidence 34566667778888888874 3332333 3455566666664 567888999899888655 345566777
Q ss_pred HHHHhhccCccccchhH---HHHHHHHHHhccc---cccccchhHHHHHHHHHH
Q 003135 337 LQVIVGRIGYEDEENSI---LFELLSSVVGAAN---ENVADHIPYIVSSLVAAI 384 (845)
Q Consensus 337 lq~Ll~~l~~e~~e~d~---l~~~L~~iV~~~~---e~l~p~a~~l~~~L~~~f 384 (845)
++...++|.|.- +... -.-+|+.++.+-. +.+.||.+.+++.|....
T Consensus 504 le~t~~~l~~d~-~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ 556 (1010)
T KOG1991|consen 504 LELTHNCLLNDN-ELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS 556 (1010)
T ss_pred HHHHHHHhccCC-cCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH
Confidence 777777776422 2222 2346667776655 559999999998876543
No 13
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.06 E-value=0.0034 Score=71.85 Aligned_cols=282 Identities=15% Similarity=0.160 Sum_probs=159.1
Q ss_pred CccccceeeeccCcc----------eeehhhHHHhhhcccccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhhhHHH
Q 003135 12 NTVKDNLLRFKTGKR----------GLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVI 81 (845)
Q Consensus 12 ~~~~~~~~~~K~kKw----------a~~il~rl~~Ry~~~~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL 81 (845)
+.+|++.-..-|--| ++.+++|++.=|-+|...||-+.+-++...-.. .-.|.+..++++|-
T Consensus 216 E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mk--------s~nd~va~qavEfW 287 (858)
T COG5215 216 EEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMK--------SQNDEVAIQAVEFW 287 (858)
T ss_pred hhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CcchHHHHHHHHHH
Confidence 556666655555555 677888888888776555554443333222222 12689999999999
Q ss_pred HhhhhcCCCceeecchhh--------hhhhhh--ccchhc-ccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhh
Q 003135 82 SHVLETGPGWRLVSPHFS--------VLLDKA--IFPALV-LNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTAR 150 (845)
Q Consensus 82 ~~~v~~~~~~~ll~p~l~--------~Ll~~v--IfP~l~-~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R 150 (845)
+++++.+.--.+-...++ .-...+ |+|.+- +=+.+ +-|. .+|..+|.
T Consensus 288 sticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q--------------~ed~--------~~DdWn~s 345 (858)
T COG5215 288 STICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQ--------------GEDY--------YGDDWNPS 345 (858)
T ss_pred HHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhc--------------CCCc--------cccccchh
Confidence 888875432222111111 111112 344321 11111 1122 24456789
Q ss_pred hhhcchheeeeecCCCCCCCCCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHH
Q 003135 151 KSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLM 230 (845)
Q Consensus 151 ~AA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~ 230 (845)
.||..-|.-. ....+ . .++++ |..|+.+-- ...+|+.+|++.+
T Consensus 346 maA~sCLqlf-----------------aq~~g-d---------~i~~p--Vl~FvEqni--------~~~~w~nreaavm 388 (858)
T COG5215 346 MAASSCLQLF-----------------AQLKG-D---------KIMRP--VLGFVEQNI--------RSESWANREAAVM 388 (858)
T ss_pred hhHHHHHHHH-----------------HHHhh-h---------HhHHH--HHHHHHHhc--------cCchhhhHHHHHH
Confidence 9998888753 22111 1 24443 223333311 2348999999999
Q ss_pred HhhchHHHHhhhchhhHHHHHhhccccceee--eehhhhHhhhhhhHhhhhhcc----c-ccchhhHHHHHHHHHHhhcC
Q 003135 231 AYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASC----L-PEDISADVYSSLLKALQMLD 303 (845)
Q Consensus 231 ~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~----l-~~~~l~~i~~~ll~~L~~~~ 303 (845)
++|++-+- ...+. -.-+....+|-+-. +.+.-+.+.++.|++|+.++. + |..++.-..++.+-.|+|-
T Consensus 389 AfGSvm~g---p~~~~-lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~- 463 (858)
T COG5215 389 AFGSVMHG---PCEDC-LTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC- 463 (858)
T ss_pred HhhhhhcC---ccHHH-HHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-
Confidence 99986421 10110 11111222232211 156779999999999999986 3 4556666666666666542
Q ss_pred CCCCcccceeeccchhhhhhhcc---------CCCCCCchhhHHHHhhccCccc-cc-h--hHHHHHHHHHHhccccccc
Q 003135 304 KGDTSCYPVRASAAGAIVGLLEN---------DYMPPEWYPLLQVIVGRIGYED-EE-N--SILFELLSSVVGAANENVA 370 (845)
Q Consensus 304 ~~~~~~lpVrv~AA~Al~~~l~~---------~~l~p~i~~llq~Ll~~l~~e~-~e-~--d~l~~~L~~iV~~~~e~l~ 370 (845)
+-+-+--+.++.+|.+| ..+.|+-+.++..|++ -.+.. +| | -.+..+|.++|....+.+.
T Consensus 464 ------p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~-~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~ 536 (858)
T COG5215 464 ------PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVK-GTELALNESNLRVSLFSALGTLILICPDAVS 536 (858)
T ss_pred ------chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHH-HHHhhccchhHHHHHHHHHHHHHhhcchhHH
Confidence 44445556677777764 2567777888999988 33333 22 2 2368899999988777776
Q ss_pred cc
Q 003135 371 DH 372 (845)
Q Consensus 371 p~ 372 (845)
|.
T Consensus 537 ~~ 538 (858)
T COG5215 537 DI 538 (858)
T ss_pred HH
Confidence 63
No 14
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.053 Score=65.45 Aligned_cols=292 Identities=14% Similarity=0.216 Sum_probs=179.6
Q ss_pred cccchhhHHHHHH-----H-------HHHhhc----ccccchhhHHHHHHHhhhH----HHHhhhhcCCCce--eecchh
Q 003135 41 FSDKLMPDIMNSV-----L-------QIVKYS----ANISKLDFLQERIISLAFD----VISHVLETGPGWR--LVSPHF 98 (845)
Q Consensus 41 ~~~~~~p~~l~~~-----l-------~ll~~~----~~~~~~~~lsd~~v~~~l~----fL~~~v~~~~~~~--ll~p~l 98 (845)
+.++.+|.++.++ + +++... .+.-..+..|++.+.+=.. |....-++-+.++ +.+|-+
T Consensus 328 ~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~~~~~~i~~~qIy 407 (982)
T KOG2022|consen 328 SVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQQIKKQILSQQIY 407 (982)
T ss_pred HHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHH
Confidence 4678888888777 1 112111 1111234445555543333 3333333333333 234777
Q ss_pred hhhhhhhccchhcc-cccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchheeeeecCCCCCCCCCCCCcc
Q 003135 99 SVLLDKAIFPALVL-NEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSV 177 (845)
Q Consensus 99 ~~Ll~~vIfP~l~~-~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~L~~~~~~~~~~~~~~~~~ 177 (845)
.+|++.. +|-+.+ +++..-.|+.|- .+.+.+-|++-.|++..
T Consensus 408 ~qlvei~-l~K~~~Ps~e~~~~W~S~s------------------~e~F~~YR~diSD~~~~------------------ 450 (982)
T KOG2022|consen 408 AQLVEIL-LKKLALPSKEIWLSWSSDS------------------REQFESYRKDISDLLMS------------------ 450 (982)
T ss_pred HHHHHHH-HHHhcCCCHHHhccCCcch------------------HHHHHHHHHHHHHHHHH------------------
Confidence 7777766 444444 344444555542 45566778877777765
Q ss_pred chhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhcccc
Q 003135 178 SSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLP 257 (845)
Q Consensus 178 ~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP 257 (845)
+...-.. ..+. +....|.++.+..++.| ..|-+-|++++-+-+++..+....++.+-..+.+- +
T Consensus 451 ~Y~ilgd---------~ll~--~L~~~l~q~~aa~d~~p---~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~--a 514 (982)
T KOG2022|consen 451 SYSILGD---------GLLD--FLIDTLEQALAAGDEDP---DSLNRTEACIFQFQSVAEYLGETESTWIPRLFETS--A 514 (982)
T ss_pred HHHHHhH---------HHHH--HHHHHHHHhhhccCCCc---hHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhc--c
Confidence 2221101 1222 34455566554444332 46999999999999999987764445544444332 3
Q ss_pred ceeeeehhhhHhhhhhhHhhhhhccc--ccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc--CCCCCCc
Q 003135 258 LYSVSVCLPYLVASANWILGELASCL--PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEW 333 (845)
Q Consensus 258 ~l~~~s~~p~LrarA~~~l~~f~~~l--~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~--~~l~p~i 333 (845)
..+-+.+.|=|-..+-..+|.++..+ .+..+.-.++.+++.|..++ --.+|...|+.+++. ..+.|++
T Consensus 515 sik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk--------~s~q~i~tl~tlC~~C~~~L~py~ 586 (982)
T KOG2022|consen 515 SIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK--------ESEQAISTLKTLCETCPESLDPYA 586 (982)
T ss_pred ccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCch--------HHHHHHHHHHHHHHhhhhhCchHH
Confidence 33322346667777889999998875 56678889999999996554 336778889999985 4899999
Q ss_pred hhhHHHHhhccCc--cc-cchhHHHHHHHHHHhcccccccc-chhHHHHHHHHHHHhhcCCCCC
Q 003135 334 YPLLQVIVGRIGY--ED-EENSILFELLSSVVGAANENVAD-HIPYIVSSLVAAISKHMHPSSE 393 (845)
Q Consensus 334 ~~llq~Ll~~l~~--e~-~e~d~l~~~L~~iV~~~~e~l~p-~a~~l~~~L~~~f~k~~~~~~~ 393 (845)
.+++..+=..++. .. ++...+|+.+.-++..-.-+-.| |...|++.+.++....+.+..+
T Consensus 587 d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~ 650 (982)
T KOG2022|consen 587 DQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGID 650 (982)
T ss_pred HHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9987655443332 22 45677888888888877755444 8889999998888777555544
No 15
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.79 E-value=0.0044 Score=73.76 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=16.3
Q ss_pred hhhhhhcchheeeeecCCCCCCCC
Q 003135 148 TARKSAINLLGVISVSKGPPMGTP 171 (845)
Q Consensus 148 s~R~AA~~lL~~L~~~~~~~~~~~ 171 (845)
+.|.+|.+.+... ..+||..+.
T Consensus 677 ei~~~AL~vIinc--Vc~pp~~r~ 698 (1516)
T KOG1832|consen 677 EIIQPALNVIINC--VCPPPTTRP 698 (1516)
T ss_pred HHHHHHHhhhhee--ecCCCCcch
Confidence 5788999988875 677775544
No 16
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=95.30 E-value=0.0094 Score=66.87 Aligned_cols=8 Identities=25% Similarity=0.181 Sum_probs=3.7
Q ss_pred ccccc-ccc
Q 003135 790 HDIEL-GSL 797 (845)
Q Consensus 790 ~e~~l-~~l 797 (845)
.|-.| +|-
T Consensus 120 sd~~~WtP~ 128 (458)
T PF10446_consen 120 SDYEFWTPG 128 (458)
T ss_pred ccceeeccc
Confidence 34445 543
No 17
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.29 E-value=0.027 Score=69.75 Aligned_cols=180 Identities=17% Similarity=0.125 Sum_probs=119.3
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceee---eehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV---SVCLPYLVASANWILGELASCLPEDISADVYSSLLK 297 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~---~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~ 297 (845)
.+|.++||++++|.++.-+.. .+......+|.|.+-. +..++-.++-|+-.+-.|..-.+...+..+++.++.
T Consensus 402 hprVr~AA~naigQ~stdl~p----~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQP----EIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcH----HHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 368999999999999866542 3456666777776642 256777888777666666554333446666666655
Q ss_pred ----HHhhcCCCCCcccceeeccchhhhhhhcc--CCCCCCchhhHHHHhhccCccc-cchhHH----HHHHHHHH-hcc
Q 003135 298 ----ALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYED-EENSIL----FELLSSVV-GAA 365 (845)
Q Consensus 298 ----~L~~~~~~~~~~lpVrv~AA~Al~~~l~~--~~l~p~i~~llq~Ll~~l~~e~-~e~d~l----~~~L~~iV-~~~ 365 (845)
.|..++ ..-||-.|+.||.+.-.. +.+.||...+|-.|.+.|.+.. .|...+ |.|+..+- ..+
T Consensus 478 ~~l~~L~~~~-----~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVG 552 (1075)
T KOG2171|consen 478 KKLLLLLQSS-----KPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVG 552 (1075)
T ss_pred HHHHHHhcCC-----chhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhh
Confidence 344443 378999999999998874 4889999999999988887766 333333 33333322 445
Q ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhh
Q 003135 366 NENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (845)
Q Consensus 366 ~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~ 413 (845)
++...|++.++++.+...= .-..+..+| ...|.+.+.+.|.++.
T Consensus 553 ke~F~~~a~eliqll~~~~-~~~~~~dd~---~~sy~~~~warmc~il 596 (1075)
T KOG2171|consen 553 KEKFLPLAEELIQLLLELQ-GSDQDDDDP---LRSYMIAFWARMCRIL 596 (1075)
T ss_pred hhhhhHhHHHHHHHHHhhc-ccchhhccc---cHHHHHHHHHHHHHHh
Confidence 6889999999999887652 112222232 3456777777777665
No 18
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.64 E-value=0.12 Score=62.82 Aligned_cols=130 Identities=19% Similarity=0.225 Sum_probs=96.1
Q ss_pred HHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc-
Q 003135 248 ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN- 326 (845)
Q Consensus 248 e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~- 326 (845)
..-+.+..+|-++ ++.--+|-|||-.+|..+...+...+..+.+.+++.|..+.+ .--+|++ ..+|..+++.
T Consensus 172 h~~il~~l~~ql~--s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q----~~~~rt~-Iq~l~~i~r~a 244 (1233)
T KOG1824|consen 172 HLSILKCLLPQLQ--SPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQ----MSATRTY-IQCLAAICRQA 244 (1233)
T ss_pred HHHHHHHHhhccc--ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCc----hHHHHHH-HHHHHHHHHHh
Confidence 3344456678888 688899999999999999988888889999999998876542 2334433 2344444442
Q ss_pred ----CCCCCCchhhHHHHhhccCccccc-hhHHHHHHHHHHhccccccccchhHHHHHHHHHH
Q 003135 327 ----DYMPPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIVSSLVAAI 384 (845)
Q Consensus 327 ----~~l~p~i~~llq~Ll~~l~~e~~e-~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f 384 (845)
+.=.+.+.|++-.+.+.+..+..| -++..++++.++.+...+|.||.+++.+.+.+-+
T Consensus 245 g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yi 307 (1233)
T KOG1824|consen 245 GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYI 307 (1233)
T ss_pred cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHh
Confidence 233567778888888755333323 6778999999999999999999999999887764
No 19
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.21 E-value=0.02 Score=46.13 Aligned_cols=52 Identities=35% Similarity=0.409 Sum_probs=42.4
Q ss_pred hhHhhhhhhHhhhhhccc---ccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhh
Q 003135 266 PYLVASANWILGELASCL---PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 323 (845)
Q Consensus 266 p~LrarA~~~l~~f~~~l---~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~ 323 (845)
|-+|..|+|.+|.++... -.....++++.++.+|.|++ -.||..|+.||.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~------~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDD------DSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSS------HHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHhcC
Confidence 468999999999987652 23468889999999998876 58999999999764
No 20
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.07 E-value=0.2 Score=58.94 Aligned_cols=173 Identities=16% Similarity=0.088 Sum_probs=113.6
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcc-cc--cchhhHHHHHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-LP--EDISADVYSSLLK 297 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l~--~~~l~~i~~~ll~ 297 (845)
.|..+-..=.+++.++....+.--+.+-++++.+ +. +..=..|-.+.-.+|..+.- ++ -..+..+++.++.
T Consensus 368 dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~----L~--~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~ 441 (885)
T KOG2023|consen 368 DWNLRKCSAAALDVLANVFGDELLPILLPLLKEH----LS--SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLS 441 (885)
T ss_pred cccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHH----cC--cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHH
Confidence 4765555555666666665432112223344433 22 34446777777888888773 42 2347889999999
Q ss_pred HHhhcCCCCCcccceeeccchhhhhhhcc---CCCCCCchhhHHHHhhccC--ccccchhHHHHHHHHHHhccccccccc
Q 003135 298 ALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIG--YEDEENSILFELLSSVVGAANENVADH 372 (845)
Q Consensus 298 ~L~~~~~~~~~~lpVrv~AA~Al~~~l~~---~~l~p~i~~llq~Ll~~l~--~e~~e~d~l~~~L~~iV~~~~e~l~p~ 372 (845)
+|.|.. .+||.-.+-+|.++-.. +.=..+..|+|+.|++.+. |-. =-|.--.+.-++-|...+++.||
T Consensus 442 ~L~DKk------plVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~-VQEAAcsAfAtleE~A~~eLVp~ 514 (885)
T KOG2023|consen 442 LLDDKK------PLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKK-VQEAACSAFATLEEEAGEELVPY 514 (885)
T ss_pred HhccCc------cceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHhccchhHHH
Confidence 999886 89999999999998652 2212345556666655443 222 13344556667788899999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhh
Q 003135 373 IPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (845)
Q Consensus 373 a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~ 413 (845)
...|.++|+-+|.|+-++|.-- ++.|++.++...
T Consensus 515 l~~IL~~l~~af~kYQ~KNLlI-------LYDAIgtlAdsv 548 (885)
T KOG2023|consen 515 LEYILDQLVFAFGKYQKKNLLI-------LYDAIGTLADSV 548 (885)
T ss_pred HHHHHHHHHHHHHHHhhcceeh-------HHHHHHHHHHHH
Confidence 9999999999999998877532 456666666543
No 21
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.59 E-value=13 Score=46.00 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=45.0
Q ss_pred HHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcc-cccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc
Q 003135 247 TANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (845)
Q Consensus 247 ~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~ 325 (845)
...|+...| ..++. ...|++|.+||..+-.|++. .=...+..++.++++.....+++ .-+-+. .||...+.
T Consensus 488 ~~~fl~~~v-~~l~~-~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~e----vl~llm--E~Ls~vv~ 559 (1005)
T KOG2274|consen 488 LQHFLNATV-NALTM-DVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDE----VLVLLM--EALSSVVK 559 (1005)
T ss_pred HHHHHHHHH-Hhhcc-CCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHH----HHHHHH--HHHHHHhc
Confidence 344554443 22332 56678899999877777764 21223455666666555443321 111111 22333333
Q ss_pred cC-----CCCCCchhhHHHHhh
Q 003135 326 ND-----YMPPEWYPLLQVIVG 342 (845)
Q Consensus 326 ~~-----~l~p~i~~llq~Ll~ 342 (845)
-+ .....+-|++-.++.
T Consensus 560 ~dpef~as~~skI~P~~i~lF~ 581 (1005)
T KOG2274|consen 560 LDPEFAASMESKICPLTINLFL 581 (1005)
T ss_pred cChhhhhhhhcchhHHHHHHHH
Confidence 21 456667777777776
No 22
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=92.49 E-value=0.1 Score=65.00 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=14.1
Q ss_pred HHHhhhccccchhhhHhhhhhccc
Q 003135 626 VVLAISSCYLCYPAVVEGILKKDE 649 (845)
Q Consensus 626 ~i~vi~~~~~~~p~~~l~~L~~~~ 649 (845)
++.+++.-+|.+|..+..+|+...
T Consensus 537 L~~~~~lq~~~~~~~~~~~l~dl~ 560 (784)
T PF04931_consen 537 LLSLVLLQLYNGPEEAVDVLDDLQ 560 (784)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Confidence 333444446677777777775443
No 23
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.39 E-value=0.18 Score=50.57 Aligned_cols=126 Identities=13% Similarity=0.092 Sum_probs=94.7
Q ss_pred HHhhccccceeeeehhhhHhhhhhhHhhhhhccccc----chhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc
Q 003135 250 LVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE----DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (845)
Q Consensus 250 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~----~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~ 325 (845)
-+.+++.-.++ ++.+.=|-.++.+++.....-+. +....-+..+++.|+.++ ..+++-.|..++..++.
T Consensus 25 ~l~~ri~~LL~--s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~-----~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 25 KLVTRINSLLQ--SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPD-----PPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHhC--CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHH
Confidence 34455666676 56666666667666665543212 234667788888888766 38888999999999987
Q ss_pred c---------CCCCCCchhhHHHHhhccCccccchhHHHHHHHHHHhccccccccchhHHHHHHHHH
Q 003135 326 N---------DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAA 383 (845)
Q Consensus 326 ~---------~~l~p~i~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~ 383 (845)
. +...|+++.+++.+++.+.... ..+..+.+|..++..|...+.||+.++-+.+...
T Consensus 98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~-~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 98 LIRGKPTLTREIATPNLPKFIQSLLQLLQDSS-CPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred HhcCCCchHHHHhhccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 2 2579999999999999665333 5788999999999999999999999988877654
No 24
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.60 E-value=0.24 Score=50.22 Aligned_cols=90 Identities=23% Similarity=0.210 Sum_probs=66.4
Q ss_pred hhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhhcc
Q 003135 265 LPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRI 344 (845)
Q Consensus 265 ~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~~l 344 (845)
+|-+|..|...+|-++...| ..+....+.+.++|.|++ ..||-.|..+|..++..+++++. +.++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~------~~VR~~al~~Ls~Li~~d~ik~k-~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDED------PLVRKTALLVLSHLILEDMIKVK-GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHcCceeeh-hhhhHHHHHHH
Confidence 57899999999998877665 447788999999999998 99999999999999999877664 34456666656
Q ss_pred CccccchhHHHHHHHHHHhcc
Q 003135 345 GYEDEENSILFELLSSVVGAA 365 (845)
Q Consensus 345 ~~e~~e~d~l~~~L~~iV~~~ 365 (845)
.+ +++.+...-..+....
T Consensus 73 ~D---~~~~Ir~~A~~~~~e~ 90 (178)
T PF12717_consen 73 VD---ENPEIRSLARSFFSEL 90 (178)
T ss_pred cC---CCHHHHHHHHHHHHHH
Confidence 43 3444544444443333
No 25
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.50 E-value=0.96 Score=47.32 Aligned_cols=180 Identities=16% Similarity=0.108 Sum_probs=101.9
Q ss_pred hhhhhhHHHHHHhhchHHHHhh-hchhhHHHHHh---hccccceeeeehhhhHhhhhhhHhhhhhccccc---chhhHHH
Q 003135 220 RIQKDYFGVLMAYGGLQEFLRE-QKSEFTANLVR---SRVLPLYSVSVCLPYLVASANWILGELASCLPE---DISADVY 292 (845)
Q Consensus 220 ~~~k~kdgaL~~ig~la~~l~~-~~~~~~e~fl~---~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~---~~l~~i~ 292 (845)
.+|..+..+|.-+-.+...-.. ...+.+-..+. .-+...+. +...-+...||.+++.++..+.. .....++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~--d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS--DLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S---HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5799888888777776654311 01111222333 23333444 45557888999999999887532 2367788
Q ss_pred HHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCCCCc-hhhHHHHhhccCccccchhHHHHHHHHHHhccc---cc
Q 003135 293 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW-YPLLQVIVGRIGYEDEENSILFELLSSVVGAAN---EN 368 (845)
Q Consensus 293 ~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i-~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~~~---e~ 368 (845)
+.+++.+.++. -+||-.|..||..++.+-...+.+ .+++...++ =.+.. --......+..++..++ ..
T Consensus 97 ~~Ll~~~~~~~------~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~-~Kn~~-vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 97 PPLLKKLGDSK------KFIREAANNALDAIIESCSYSPKILLEILSQGLK-SKNPQ-VREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHGGG---------HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT--S-HH-HHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHcccc------HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHh-CCCHH-HHHHHHHHHHHHHHHccchHhh
Confidence 88889888877 789999999999999864433433 444444333 11111 23446778888888888 33
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhh
Q 003135 369 VADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 414 (845)
Q Consensus 369 l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~~ 414 (845)
+.. ...+..+...+.+.+.+.. |.+=+.+.+++..+-+++.
T Consensus 169 l~~--~~~~~~l~~~l~~~l~D~~---~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 169 LQK--SAFLKQLVKALVKLLSDAD---PEVREAARECLWALYSHFP 209 (228)
T ss_dssp G----HHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHHH-
T ss_pred hcc--cchHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHCC
Confidence 333 2234666666677766654 4666667777777766653
No 26
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.04 E-value=0.5 Score=55.78 Aligned_cols=131 Identities=17% Similarity=0.268 Sum_probs=81.5
Q ss_pred HHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccC-
Q 003135 249 NLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND- 327 (845)
Q Consensus 249 ~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~- 327 (845)
-+..+.+.-+++ ++.|++|+.|..+++.++ ++++...+++.+.++|.+++ .-||=.|+.|+.++....
T Consensus 78 ~l~~n~l~kdl~--~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~------~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 78 ILIINSLQKDLN--SPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPS------PYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp HHHHHHHHHHHC--SSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSS------HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhc--CCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCc------hHHHHHHHHHHHHHhccCH
Confidence 455666667788 789999999999999987 47778889999999999987 799999999999998752
Q ss_pred CCCCCchhhHHHHhhccCccccchhHHHHHHHHHHhc-cccccccchhHHHHHHHHHHHhhcCCCCCChHHH
Q 003135 328 YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGA-ANENVADHIPYIVSSLVAAISKHMHPSSEPWPQV 398 (845)
Q Consensus 328 ~l~p~i~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~-~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~ 398 (845)
...+.. ++..+.+.+. +. +...+..++..+.+. ..++.. ..+...+...+.+.+ ..++||.+.
T Consensus 147 ~~~~~~--~~~~l~~lL~-d~-~~~V~~~a~~~l~~i~~~~~~~---~~~~~~~~~~L~~~l-~~~~~~~q~ 210 (526)
T PF01602_consen 147 DLVEDE--LIPKLKQLLS-DK-DPSVVSAALSLLSEIKCNDDSY---KSLIPKLIRILCQLL-SDPDPWLQI 210 (526)
T ss_dssp CCHHGG--HHHHHHHHTT-HS-SHHHHHHHHHHHHHHHCTHHHH---TTHHHHHHHHHHHHH-TCCSHHHHH
T ss_pred HHHHHH--HHHHHhhhcc-CC-cchhHHHHHHHHHHHccCcchh---hhhHHHHHHHhhhcc-cccchHHHH
Confidence 222221 3444444342 22 234444444433333 222221 133333344333333 445667554
No 27
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=90.97 E-value=0.91 Score=53.81 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=66.1
Q ss_pred HHHHhhccccceeeeehhhhHhhhhhhHhhhhhccc-ccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 248 ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 248 e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
+.+-.+.++..++. ..+=-..-+|.++.+.-... +.....++.+.+..+|..++ ..||..|+.+|++++++
T Consensus 36 ~~~~~~~lf~~L~~--~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~------~~Vr~l~l~~l~~~~~~ 107 (503)
T PF10508_consen 36 ERLPEPVLFDCLNT--SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPS------PKVRRLALKQLGRIARH 107 (503)
T ss_pred HhchHHHHHHHHhh--cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHhcC
Confidence 34433446666763 33333356788888876664 45557888899999999887 88999999999999986
Q ss_pred C------CCCCCchhhHHHHhhccCccc-cchhHHHHHHHHHHh
Q 003135 327 D------YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVG 363 (845)
Q Consensus 327 ~------~l~p~i~~llq~Ll~~l~~e~-~e~d~l~~~L~~iV~ 363 (845)
. ...+ .++..++.+|..++ +=.....++|..+..
T Consensus 108 ~~~~~~~~~~~---~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 108 SEGAAQLLVDN---ELLPLIIQCLRDPDLSVAKAAIKALKKLAS 148 (503)
T ss_pred CHHHHHHhcCc---cHHHHHHHHHcCCcHHHHHHHHHHHHHHhC
Confidence 5 1223 34555555555544 112334455555443
No 28
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.95 E-value=3.8 Score=45.04 Aligned_cols=71 Identities=27% Similarity=0.248 Sum_probs=59.3
Q ss_pred hHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc
Q 003135 246 FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (845)
Q Consensus 246 ~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~ 325 (845)
.++.++.+.|.|-++ ++.+-+|.+|..++|-|+- ++.+...+.+..+.++++..+ .+||+.|..||--++.
T Consensus 23 ~l~~ll~~lI~P~v~--~~~~~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~~~~~------~~v~~~al~~l~Dll~ 93 (298)
T PF12719_consen 23 SLESLLDSLILPAVQ--SSDPAVRELALKCLGLCCL-LDKELAKEHLPLFLQALQKDD------EEVKITALKALFDLLL 93 (298)
T ss_pred hHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHH
Confidence 347999999999999 7889999999999999965 666777788888888885443 8999999888877764
No 29
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=89.35 E-value=0.28 Score=61.23 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=13.7
Q ss_pred hhhHHHHhhccCccccchhHHHHHHHHHHhc
Q 003135 334 YPLLQVIVGRIGYEDEENSILFELLSSVVGA 364 (845)
Q Consensus 334 ~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~ 364 (845)
.+.+.+++..+.+.-.+.....++++.++..
T Consensus 325 ~~~~~~lm~~~g~q~fd~~t~~k~i~~il~~ 355 (784)
T PF04931_consen 325 VPFLWNLMRSLGNQNFDQITKTKTIEQILLS 355 (784)
T ss_pred hhHHHHHhccccchHHHHHHHHHHHHHHHhc
Confidence 3344444443333222344455555555543
No 30
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.91 E-value=13 Score=45.05 Aligned_cols=159 Identities=19% Similarity=0.262 Sum_probs=96.1
Q ss_pred hHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeee-ehhhhHhhhhhhHhhhhhccc----ccc----hhhHHHHHH
Q 003135 225 YFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVS-VCLPYLVASANWILGELASCL----PED----ISADVYSSL 295 (845)
Q Consensus 225 kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~-s~~p~LrarA~~~l~~f~~~l----~~~----~l~~i~~~l 295 (845)
||++=..+|.+++.+...-.+. ..+ +-+++-+... ..+|++-..+||-+.-|+... +.. -....|+.+
T Consensus 423 kdTaAwtlgrI~d~l~e~~~n~--~~l-~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~i 499 (859)
T KOG1241|consen 423 KDTAAWTLGRIADFLPEAIINQ--ELL-QSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAI 499 (859)
T ss_pred cchHHHHHHHHHhhchhhcccH--hhh-hHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHH
Confidence 3999999999998876521111 111 1111212111 478999999999999998752 111 233577777
Q ss_pred HHHHhh-cCCCCCcccceeeccchhhhhhhccC--CCCCCchhh----HHHHhhccC-----ccc----cc-hhHHHHHH
Q 003135 296 LKALQM-LDKGDTSCYPVRASAAGAIVGLLEND--YMPPEWYPL----LQVIVGRIG-----YED----EE-NSILFELL 358 (845)
Q Consensus 296 l~~L~~-~~~~~~~~lpVrv~AA~Al~~~l~~~--~l~p~i~~l----lq~Ll~~l~-----~e~----~e-~d~l~~~L 358 (845)
++.|.. .+..+.+.--.|+.|=.||-.++.+. +..|.+..+ +.+|=..|+ .++ .| -+.|..+|
T Consensus 500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~L 579 (859)
T KOG1241|consen 500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTL 579 (859)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH
Confidence 777642 22222234678999999999999864 333322222 222222222 222 12 22367788
Q ss_pred HHHHhccccccccchhHHHHHHHHHHHh
Q 003135 359 SSVVGAANENVADHIPYIVSSLVAAISK 386 (845)
Q Consensus 359 ~~iV~~~~e~l~p~a~~l~~~L~~~f~k 386 (845)
+.|+.+++..+.+++.+|+..+.++|-+
T Consensus 580 q~i~rk~~~~~~~~~d~iM~lflri~~s 607 (859)
T KOG1241|consen 580 QSIIRKVGSDIREVSDQIMGLFLRIFES 607 (859)
T ss_pred HHHHHHccccchhHHHHHHHHHHHHHcC
Confidence 8899998888888888888877777654
No 31
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.30 E-value=0.16 Score=61.28 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=7.4
Q ss_pred cccCcccccCCcccccccc
Q 003135 774 LENNTLVEEGDVEDQEHDI 792 (845)
Q Consensus 774 ~~~~~~~~~~~~~d~~~e~ 792 (845)
++.|+..|+||.+|.+||+
T Consensus 1475 leeGedgdD~ds~D~Dee~ 1493 (1516)
T KOG1832|consen 1475 LEEGEDGDDGDSEDEDEED 1493 (1516)
T ss_pred HhhcCCCCCCCccccchhh
Confidence 3445443333333333333
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=87.47 E-value=2.8 Score=51.86 Aligned_cols=138 Identities=16% Similarity=0.111 Sum_probs=83.7
Q ss_pred HHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccC-C
Q 003135 250 LVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-Y 328 (845)
Q Consensus 250 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~-~ 328 (845)
+..+.+.-+++ ++.|++|+-|..+++..+. ++++..+...+.+||.|++ .-||=.||.|+.++.+.+ .
T Consensus 105 LaINtl~KDl~--d~Np~IRaLALRtLs~Ir~---~~i~e~l~~~lkk~L~D~~------pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 105 LAVNTFLQDTT--NSSPVVRALAVRTMMCIRV---SSVLEYTLEPLRRAVADPD------PYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHhhCcc
Confidence 33444455677 7899999999998877655 6677888999999999887 899999999999998743 2
Q ss_pred C--CCCchhhHHHHhhccCccccchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Q 003135 329 M--PPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAAL 406 (845)
Q Consensus 329 l--~p~i~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l 406 (845)
+ ...+.+-|..+ |.+. +...+..++..+.+.-... |-...+....+..++..+++. ++|.|+ ++.+.|
T Consensus 174 lv~~~~~~~~L~~L---L~D~--dp~Vv~nAl~aL~eI~~~~--~~~l~l~~~~~~~Ll~~L~e~-~EW~Qi--~IL~lL 243 (746)
T PTZ00429 174 LFYQQDFKKDLVEL---LNDN--NPVVASNAAAIVCEVNDYG--SEKIESSNEWVNRLVYHLPEC-NEWGQL--YILELL 243 (746)
T ss_pred cccccchHHHHHHH---hcCC--CccHHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHHhhcC-ChHHHH--HHHHHH
Confidence 2 12334444444 3322 4555666655444432211 111223333333333333332 468886 455666
Q ss_pred HH
Q 003135 407 AL 408 (845)
Q Consensus 407 ~~ 408 (845)
+.
T Consensus 244 ~~ 245 (746)
T PTZ00429 244 AA 245 (746)
T ss_pred Hh
Confidence 33
No 33
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=87.45 E-value=2.1 Score=43.34 Aligned_cols=145 Identities=12% Similarity=0.127 Sum_probs=88.3
Q ss_pred HHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcc-c-ccchhhHHHHHHHHHHhhcCC
Q 003135 227 GVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-L-PEDISADVYSSLLKALQMLDK 304 (845)
Q Consensus 227 gaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~-l-~~~~l~~i~~~ll~~L~~~~~ 304 (845)
.++.++|-|+ .. .+..+++++ .++...|. ++.|.+|..|.-+++++-.. + .. -.+++..++.++.|++
T Consensus 7 n~i~~l~DL~---~r-~~~~ve~~~-~~l~~~L~--D~~~~VR~~al~~Ls~Li~~d~ik~--k~~l~~~~l~~l~D~~- 76 (178)
T PF12717_consen 7 NAIIALGDLC---IR-YPNLVEPYL-PNLYKCLR--DEDPLVRKTALLVLSHLILEDMIKV--KGQLFSRILKLLVDEN- 76 (178)
T ss_pred HHHHHHHHHH---Hh-CcHHHHhHH-HHHHHHHC--CCCHHHHHHHHHHHHHHHHcCceee--hhhhhHHHHHHHcCCC-
Confidence 3444444443 32 344555554 34456677 68999999999999998664 2 21 2456688889999988
Q ss_pred CCCcccceeeccchhhhhhhcc---CCCCCCchhhHHHHhhccCcc---ccchhHHHHHHHHHHhccccccccchhHHHH
Q 003135 305 GDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYE---DEENSILFELLSSVVGAANENVADHIPYIVS 378 (845)
Q Consensus 305 ~~~~~lpVrv~AA~Al~~~l~~---~~l~p~i~~llq~Ll~~l~~e---~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~ 378 (845)
.-||-.|..++..+... ..+...+++++..|-..-..+ ...-+.-...+.-+++.... -...-.|+.
T Consensus 77 -----~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--d~~~~~l~~ 149 (178)
T PF12717_consen 77 -----PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--DKQKESLVE 149 (178)
T ss_pred -----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--HHHHHHHHH
Confidence 77999999999999876 245556666666555421111 10122233333334444432 123457788
Q ss_pred HHHHHHHhhc
Q 003135 379 SLVAAISKHM 388 (845)
Q Consensus 379 ~L~~~f~k~~ 388 (845)
+|++.|....
T Consensus 150 kl~~~~~~~~ 159 (178)
T PF12717_consen 150 KLCQRFLNAV 159 (178)
T ss_pred HHHHHHHHHc
Confidence 8887776543
No 34
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.08 E-value=4.2 Score=49.07 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=70.3
Q ss_pred HHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc-CC
Q 003135 250 LVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-DY 328 (845)
Q Consensus 250 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~-~~ 328 (845)
++.+.+--+|| .|+-|+|+....|+.++.. ++.+...++.+..||..+. -=||=.|..||-.+..+ +.
T Consensus 99 Lvcna~RkDLQ--HPNEyiRG~TLRFLckLkE---~ELlepl~p~IracleHrh------sYVRrNAilaifsIyk~~~~ 167 (948)
T KOG1058|consen 99 LVCNAYRKDLQ--HPNEYIRGSTLRFLCKLKE---PELLEPLMPSIRACLEHRH------SYVRRNAILAIFSIYKNFEH 167 (948)
T ss_pred HHHHHHhhhcc--CchHhhcchhhhhhhhcCc---HHHhhhhHHHHHHHHhCcc------hhhhhhhheeehhHHhhhhh
Confidence 45566667788 6788999999999977655 7788999999999999887 77999999999999987 68
Q ss_pred CCCCchhhHHHHhh
Q 003135 329 MPPEWYPLLQVIVG 342 (845)
Q Consensus 329 l~p~i~~llq~Ll~ 342 (845)
+-|..++++...+.
T Consensus 168 L~pDapeLi~~fL~ 181 (948)
T KOG1058|consen 168 LIPDAPELIESFLL 181 (948)
T ss_pred hcCChHHHHHHHHH
Confidence 99999999988876
No 35
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.76 E-value=0.75 Score=41.66 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCC-CCCCchhhHHHHhhccCccccchhH--HHHHHHHHHhccc
Q 003135 290 DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-MPPEWYPLLQVIVGRIGYEDEENSI--LFELLSSVVGAAN 366 (845)
Q Consensus 290 ~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~-l~p~i~~llq~Ll~~l~~e~~e~d~--l~~~L~~iV~~~~ 366 (845)
+.|+.++..|+|+. +|||..|-.-|+.++.... ....++.+++-++..|.+++ .-=+ .++++..++..+.
T Consensus 3 ~~~~~al~~L~dp~------~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 3 ETLQEALSDLNDPL------PPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHHccCCC------cchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHCh
Confidence 46788888899887 9999999999999999776 66677888888888777765 3222 2566666666665
Q ss_pred ccccc
Q 003135 367 ENVAD 371 (845)
Q Consensus 367 e~l~p 371 (845)
+.+.|
T Consensus 76 ~~vl~ 80 (92)
T PF10363_consen 76 DEVLP 80 (92)
T ss_pred HHHHH
Confidence 55443
No 36
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=85.02 E-value=0.32 Score=44.58 Aligned_cols=94 Identities=19% Similarity=0.140 Sum_probs=63.4
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceee--eehhhhHhhhhhhHhhhhhccccc--c-h-hhHHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPE--D-I-SADVYSS 294 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~--~-~-l~~i~~~ 294 (845)
+|..+.+++.+++.++..-. +....++...++|.+.. .++.+-++..|+|+++.++...++ . . -..+++.
T Consensus 20 ~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~ 95 (120)
T cd00020 20 DENVQREAAWALSNLSAGNN----DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPK 95 (120)
T ss_pred CHHHHHHHHHHHHHHhcCCH----HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHH
Confidence 47889999999999885411 12233333344443321 156789999999999999876421 1 1 1236788
Q ss_pred HHHHHhhcCCCCCcccceeeccchhhhhhh
Q 003135 295 LLKALQMLDKGDTSCYPVRASAAGAIVGLL 324 (845)
Q Consensus 295 ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l 324 (845)
++++|.+.+ .-||-.|+.+|.++.
T Consensus 96 l~~~l~~~~------~~~~~~a~~~l~~l~ 119 (120)
T cd00020 96 LVNLLDSSN------EDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHhcCC------HHHHHHHHHHHHHhh
Confidence 888888775 778889988888764
No 37
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=84.90 E-value=0.46 Score=43.43 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=48.4
Q ss_pred cchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc--CCCCCCchhhHHHHhhccCccc
Q 003135 285 EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYED 348 (845)
Q Consensus 285 ~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~--~~l~p~i~~llq~Ll~~l~~e~ 348 (845)
.+.+..+++.+++|+.|++ .-||.+|+.||.++... +.+.|+..+++..|.+++...+
T Consensus 22 ~~~l~~Il~pVL~~~~D~d------~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQD------SRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred HHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4458889999999999998 88999999999999874 4667788999999999655444
No 38
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=84.30 E-value=10 Score=44.92 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=80.9
Q ss_pred ehhhhHhhhhhhHhhhhhcccc----cchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccC-----CCCCCc
Q 003135 263 VCLPYLVASANWILGELASCLP----EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-----YMPPEW 333 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~----~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~-----~l~p~i 333 (845)
.++|.+|.-||+.+++....-. .-.-..+++.++.||.+++ .-|.-.|+.+|..+..++ .+.+..
T Consensus 88 h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d------~~Va~~A~~~L~~l~~~~~~~~~l~~~~~ 161 (503)
T PF10508_consen 88 HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD------LSVAKAAIKALKKLASHPEGLEQLFDSNL 161 (503)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc------HHHHHHHHHHHHHHhCCchhHHHHhCcch
Confidence 6889999999999988765321 1123568999999999998 889999999999998764 234444
Q ss_pred hhhHHHHhhccCccccchhHHHHHHHHHHhccccccccchhHHHHH--HHHHHHhhcCCCCCChHHHHHHHHHHHHHHHH
Q 003135 334 YPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSS--LVAAISKHMHPSSEPWPQVVERGFAALALMAQ 411 (845)
Q Consensus 334 ~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~--L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~ 411 (845)
..-|..++. +.. ...-+++++-+|..++.. |.+.+.+.. +.+.+++.+.+ .+..-+. ...+.|..|+.
T Consensus 162 ~~~L~~l~~---~~~--~~vR~Rv~el~v~i~~~S--~~~~~~~~~sgll~~ll~eL~~-dDiLvql--nalell~~La~ 231 (503)
T PF10508_consen 162 LSKLKSLMS---QSS--DIVRCRVYELLVEIASHS--PEAAEAVVNSGLLDLLLKELDS-DDILVQL--NALELLSELAE 231 (503)
T ss_pred HHHHHHHHh---ccC--HHHHHHHHHHHHHHHhcC--HHHHHHHHhccHHHHHHHHhcC-ccHHHHH--HHHHHHHHHHc
Confidence 444444444 211 223466777766654332 222233332 55555555555 4432222 24455555554
No 39
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.73 E-value=0.69 Score=54.01 Aligned_cols=92 Identities=25% Similarity=0.288 Sum_probs=62.1
Q ss_pred hHHHHHHhhchHHHHhhhchhhHHHHHhhccccceee---eehhhhHhhhhhhHhhhhhcccc----cchhhHHHHHHHH
Q 003135 225 YFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV---SVCLPYLVASANWILGELASCLP----EDISADVYSSLLK 297 (845)
Q Consensus 225 kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~---~s~~p~LrarA~~~l~~f~~~l~----~~~l~~i~~~ll~ 297 (845)
.=.||+++|+++.- ...+....+..-.+|.|.. .++...+|.-|||++|....--. .-.-..+++.+++
T Consensus 296 ~~PaLRaiGNIvtG----~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 296 VTPALRAIGNIVTG----SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLIN 371 (514)
T ss_pred ccHHHhhccceeec----cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHH
Confidence 45688999986521 1112223333334444432 15556799999999999776422 2234467899999
Q ss_pred HHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 298 ALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 298 ~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
.|+..+ .-.|-+||-||.++...
T Consensus 372 ~l~~~e------f~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 372 LLQTAE------FDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHhccc------hHHHHHHHHHHHhhccc
Confidence 999887 99999999999999874
No 40
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=82.54 E-value=0.6 Score=33.13 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 291 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 291 i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
+++.++++++|++ .-||..|+.||..+.++
T Consensus 1 llp~l~~~l~D~~------~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPS------PEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SS------HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCC------HHHHHHHHHHHHHHHhh
Confidence 5788999999998 89999999999988753
No 41
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=81.90 E-value=2 Score=52.64 Aligned_cols=114 Identities=17% Similarity=0.098 Sum_probs=83.0
Q ss_pred HHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccC-C
Q 003135 250 LVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-Y 328 (845)
Q Consensus 250 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~-~ 328 (845)
...+.+.-+++ .++|++|+-|..+++..+. ++.+..+++.+.+|+.++. .=||=+||.|+..+.+.+ .
T Consensus 92 LavNti~kDl~--d~N~~iR~~AlR~ls~l~~---~el~~~~~~~ik~~l~d~~------ayVRk~Aalav~kly~ld~~ 160 (757)
T COG5096 92 LAVNTIQKDLQ--DPNEEIRGFALRTLSLLRV---KELLGNIIDPIKKLLTDPH------AYVRKTAALAVAKLYRLDKD 160 (757)
T ss_pred HHHHHHHhhcc--CCCHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHccCCc------HHHHHHHHHHHHHHHhcCHh
Confidence 55667777888 7999999999999987655 6678889999999999998 679999999999998743 3
Q ss_pred CCCCc--hhhHHHHhhccCccccchhHHHHHHHHHHhccccccccchhHHHHH
Q 003135 329 MPPEW--YPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSS 379 (845)
Q Consensus 329 l~p~i--~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~ 379 (845)
+-+.. -.+++.|+. +. +...+..++-.+.+...+...+|...++..
T Consensus 161 l~~~~g~~~~l~~l~~----D~-dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~ 208 (757)
T COG5096 161 LYHELGLIDILKELVA----DS-DPIVIANALASLAEIDPELAHGYSLEVILR 208 (757)
T ss_pred hhhcccHHHHHHHHhh----CC-CchHHHHHHHHHHHhchhhhhhHHHHHHHH
Confidence 33322 334444433 22 466677788887777777555665554444
No 42
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=80.36 E-value=4.1 Score=48.20 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=93.0
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceee--eehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPEDISADVYSSLLKA 298 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~ 298 (845)
.||.|-+++-++|++++...+ + -.+....|+|.++. ...+|-+|..+..++-+|++..+..-++.+++.++.|
T Consensus 267 kWrtK~aslellg~m~~~ap~----q-Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~ 341 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPK----Q-LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDA 341 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchH----H-HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 799999999999998866433 2 34455667788764 2679999999999999999987544499999999999
Q ss_pred HhhcCCCCCcccceeeccchhhhhhhccC---CCCCCchhhHHHHhhc-c--Cccccc--hhHHHHHHHHHHhccccccc
Q 003135 299 LQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPEWYPLLQVIVGR-I--GYEDEE--NSILFELLSSVVGAANENVA 370 (845)
Q Consensus 299 L~~~~~~~~~~lpVrv~AA~Al~~~l~~~---~l~p~i~~llq~Ll~~-l--~~e~~e--~d~l~~~L~~iV~~~~e~l~ 370 (845)
+.+|... --.|+..+..-. ++.+--..+|-.+++. + ++...+ .-.+..-|-..|+ -...+.
T Consensus 342 l~dp~~~----------~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lve-Dp~~la 410 (569)
T KOG1242|consen 342 LADPSCY----------TPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE-DPKDLA 410 (569)
T ss_pred hcCcccc----------hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc-CHHHHh
Confidence 9998721 123455555432 3333222233333221 1 111101 1112222333332 245688
Q ss_pred cchhHHHHHHHHHH
Q 003135 371 DHIPYIVSSLVAAI 384 (845)
Q Consensus 371 p~a~~l~~~L~~~f 384 (845)
||.+.|...|-..+
T Consensus 411 pfl~~Llp~lk~~~ 424 (569)
T KOG1242|consen 411 PFLPSLLPGLKENL 424 (569)
T ss_pred hhHHHHhhHHHHHh
Confidence 99999998877665
No 43
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=80.17 E-value=0.81 Score=39.92 Aligned_cols=48 Identities=31% Similarity=0.294 Sum_probs=40.6
Q ss_pred ehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhh
Q 003135 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 323 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~ 323 (845)
++.+.+|..|+++++++.+ + ++++.++..+.+++ ..||..|+.||..+
T Consensus 11 ~~~~~vr~~a~~~L~~~~~---~----~~~~~L~~~l~d~~------~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELGD---P----EAIPALIELLKDED------PMVRRAAARALGRI 58 (88)
T ss_dssp SSSHHHHHHHHHHHHCCTH---H----HHHHHHHHHHTSSS------HHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHcCC---H----hHHHHHHHHHcCCC------HHHHHHHHHHHHHh
Confidence 6889999999999996643 2 57888888888776 89999999999976
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=79.97 E-value=1.8 Score=50.97 Aligned_cols=84 Identities=19% Similarity=0.173 Sum_probs=59.3
Q ss_pred HhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhH-HHHHHHHHHhhcCCCCCcccceeeccchhhhhh-hccCC
Q 003135 251 VRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISAD-VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL-LENDY 328 (845)
Q Consensus 251 l~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~-i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~-l~~~~ 328 (845)
+...|...+. +++|++|..|+-.+.++.... ++.+.. +++.+.+.|.|++ ..|+..|+.++..+ ...+.
T Consensus 115 l~~~v~~ll~--~~~~~VRk~A~~~l~~i~~~~-p~~~~~~~~~~l~~lL~d~~------~~V~~~a~~~l~~i~~~~~~ 185 (526)
T PF01602_consen 115 LIPDVIKLLS--DPSPYVRKKAALALLKIYRKD-PDLVEDELIPKLKQLLSDKD------PSVVSAALSLLSEIKCNDDS 185 (526)
T ss_dssp HHHHHHHHHH--SSSHHHHHHHHHHHHHHHHHC-HCCHHGGHHHHHHHHTTHSS------HHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHhc--CCchHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhhccCCc------chhHHHHHHHHHHHccCcch
Confidence 4445555566 789999999999998887653 344444 7899999998887 88999999999888 22222
Q ss_pred CCCCchhhHHHHhhc
Q 003135 329 MPPEWYPLLQVIVGR 343 (845)
Q Consensus 329 l~p~i~~llq~Ll~~ 343 (845)
..+.++.+...|.+.
T Consensus 186 ~~~~~~~~~~~L~~~ 200 (526)
T PF01602_consen 186 YKSLIPKLIRILCQL 200 (526)
T ss_dssp HTTHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhhhc
Confidence 125556666666553
No 45
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=78.40 E-value=1.8 Score=39.58 Aligned_cols=90 Identities=18% Similarity=0.116 Sum_probs=62.1
Q ss_pred hHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccc---hhhHHHHHHHHHHhh
Q 003135 225 YFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED---ISADVYSSLLKALQM 301 (845)
Q Consensus 225 kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~---~l~~i~~~ll~~L~~ 301 (845)
+.|.|..+.+++-.+.+....+++ .+..-|+..|. .+.+-+|.-||..+.........+ .+.++|.++.+.+.|
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~--D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFD--DQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 678888888888766543223332 23344555566 678899999999999998875433 478899999999999
Q ss_pred cCCCCCcccceeeccchhhhhhh
Q 003135 302 LDKGDTSCYPVRASAAGAIVGLL 324 (845)
Q Consensus 302 ~~~~~~~~lpVrv~AA~Al~~~l 324 (845)
++ .-||-.| .-|.+++
T Consensus 80 ~d------~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PD------ENVRSAA-ELLDRLL 95 (97)
T ss_pred Cc------hhHHHHH-HHHHHHh
Confidence 87 5576555 3344433
No 46
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=77.98 E-value=4.8 Score=47.23 Aligned_cols=178 Identities=15% Similarity=0.174 Sum_probs=107.4
Q ss_pred hhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceee----eehhhhHhhhhhhHhhhhhcccc------cchhhHHH
Q 003135 223 KDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV----SVCLPYLVASANWILGELASCLP------EDISADVY 292 (845)
Q Consensus 223 k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~----~s~~p~LrarA~~~l~~f~~~l~------~~~l~~i~ 292 (845)
-.|+..-..+|.+++.+-..-++. .|+.|+.+. -..+|+.-+.+||..-.|..+++ +..+...|
T Consensus 423 ~vk~ttAwc~g~iad~va~~i~p~------~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY 496 (858)
T COG5215 423 WVKSTTAWCFGAIADHVAMIISPC------GHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFY 496 (858)
T ss_pred ehhhHHHHHHHHHHHHHHHhcCcc------ccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHH
Confidence 345555566999998865532221 233333321 03689999999999998888764 33477778
Q ss_pred HHHHHHHhhcCCCCCcccceeeccchhhhhhhcc--CCCCCCchhhH-----------HHHhhccCccc----cc-hhHH
Q 003135 293 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLL-----------QVIVGRIGYED----EE-NSIL 354 (845)
Q Consensus 293 ~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~--~~l~p~i~~ll-----------q~Ll~~l~~e~----~e-~d~l 354 (845)
..+++.|.....-..+.--.|+++=.||..++.. +.+.|.+..+. +.+-..+..++ +| -.-+
T Consensus 497 ~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~ 576 (858)
T COG5215 497 LAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNY 576 (858)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 8887777321100113367889999999998873 34444333332 22222222222 11 2225
Q ss_pred HHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHH-HHHHHHHHHHHHhh
Q 003135 355 FELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVV-ERGFAALALMAQSW 413 (845)
Q Consensus 355 ~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~-~~~f~~l~~~~~~~ 413 (845)
..+|..||.+++..|.|.+.+|+..+.+++-+- ++ .++ .+.|.++++|..+.
T Consensus 577 ~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~--~~-----t~~~~dV~~aIsal~~sl 629 (858)
T COG5215 577 IGVLEAIIRTRRRDIEDVEDQLMELFIRILEST--KP-----TTAFGDVYTAISALSTSL 629 (858)
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHhcc--CC-----chhhhHHHHHHHHHHHHH
Confidence 678889999999999998888888776665332 11 333 34577777776543
No 47
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=76.72 E-value=4.9 Score=49.69 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=102.9
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhccc-c---------cchhhH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-P---------EDISAD 290 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-~---------~~~l~~ 290 (845)
.-.++++.-++++.|...--+...++ .+-+.+-|.-..+ .+++=+-+-|..++++|...+ | +.-...
T Consensus 492 s~~ki~~L~fl~~~L~s~~p~~fhp~-~~~Ls~~v~~aV~--d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~ 568 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISHPPEVFHPH-LSALSPPVVAAVG--DPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKT 568 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcccc-hhhhhhHHHHHhc--CchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHH
Confidence 45677877777776653311111111 2223333322333 567777888889999988852 1 234788
Q ss_pred HHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc--CCCCCCchhhHHHHhhccCccccchhHHHHHHHHHHhcccc-
Q 003135 291 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANE- 367 (845)
Q Consensus 291 i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~--~~l~p~i~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~~~e- 367 (845)
+|..+++.|...+ .+.=||-.|..|+..++.+ +.++..++..|..++.+|+||. .--.-++++..|+...-.
T Consensus 569 m~~~tl~rL~a~d----~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi-TRl~AvkAlt~Ia~S~l~i 643 (1233)
T KOG1824|consen 569 MYDCTLQRLKATD----SDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI-TRLTAVKALTLIAMSPLDI 643 (1233)
T ss_pred HHHHHHHHHhccc----ccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh-HHHHHHHHHHHHHhcccee
Confidence 9999999998776 3488999999999999875 6788899999999999999887 444456666655543222
Q ss_pred ccccchhHHHHHHHHHHHh
Q 003135 368 NVADHIPYIVSSLVAAISK 386 (845)
Q Consensus 368 ~l~p~a~~l~~~L~~~f~k 386 (845)
.+.|...++...|++-.-|
T Consensus 644 ~l~~~l~~il~~l~~flrK 662 (1233)
T KOG1824|consen 644 DLSPVLTEILPELASFLRK 662 (1233)
T ss_pred ehhhhHHHHHHHHHHHHHH
Confidence 3455555666655554433
No 48
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=76.62 E-value=13 Score=45.16 Aligned_cols=118 Identities=11% Similarity=-0.011 Sum_probs=72.1
Q ss_pred hhhhhhhHHHHHHhhchHHHHhhhc----h-h----h----HHHHHhhccccceeeeehhhhHhhhhhhHhhhhhccccc
Q 003135 219 SRIQKDYFGVLMAYGGLQEFLREQK----S-E----F----TANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE 285 (845)
Q Consensus 219 ~~~~k~kdgaL~~ig~la~~l~~~~----~-~----~----~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~ 285 (845)
..+|...|.|++.+-.++..++..+ + + . .+.++.+-=+|- .+|+.++--=...+-+|.+.++.
T Consensus 451 e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~----h~h~lVqLlfmE~ivRY~kff~~ 526 (980)
T KOG2021|consen 451 EESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLA----HDHELVQLLFMELIVRYNKFFST 526 (980)
T ss_pred cchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHccccc----CCchHHHHHHHHHHHHHHHHHhc
Confidence 3589999999999999998876521 1 1 1 122232221221 45666666556777777776643
Q ss_pred chhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc--cCCCCCCchhhHHHHhh
Q 003135 286 DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE--NDYMPPEWYPLLQVIVG 342 (845)
Q Consensus 286 ~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~--~~~l~p~i~~llq~Ll~ 342 (845)
+ .+.++.++.++.++-.=+...--||.-|+--..+|+. ...+.|++..+++++=.
T Consensus 527 e--sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqd 583 (980)
T KOG2021|consen 527 E--SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQD 583 (980)
T ss_pred c--hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2366777766655421111226789888888888876 34566677776655444
No 49
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.50 E-value=5.9 Score=50.11 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=108.7
Q ss_pred hhhhhHHHHHHhhchHHHHhhhc---hhhHHHHHhhccccceeeeehhhhHhhhh----hhHhhhhhcccccchhhHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQK---SEFTANLVRSRVLPLYSVSVCLPYLVASA----NWILGELASCLPEDISADVYS 293 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~---~~~~e~fl~~~VlP~l~~~s~~p~LrarA----~~~l~~f~~~l~~~~l~~i~~ 293 (845)
.=+..+.+|+-+|.++.++..-. +..++.|+...... +. ...+.++++- -.++.+|.+.++.+.+.++++
T Consensus 754 aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isag-l~--gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~ 830 (1176)
T KOG1248|consen 754 ARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAG-LV--GDSTRVVASDIVAITHILQEFKNILDDETLEKLIS 830 (1176)
T ss_pred HHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhh-hc--ccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 34667889999997665544322 23456676544333 33 2445555552 245556777788888999999
Q ss_pred HHHHHHhhcCCCCCcccceeeccchhhhhhhcc---CCCCCCchhhHHHHhhccCccc--cchhHHHHHHHHHHhccccc
Q 003135 294 SLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYED--EENSILFELLSSVVGAANEN 368 (845)
Q Consensus 294 ~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~---~~l~p~i~~llq~Ll~~l~~e~--~e~d~l~~~L~~iV~~~~e~ 368 (845)
.+..+|.... .=|+-.|...|..++.. ..+.|+.+.||..++. +..+- ..--.+-..++++|.+|+-+
T Consensus 831 ~V~~~L~s~s------reI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~-ls~d~k~~~r~Kvr~LlekLirkfg~~ 903 (1176)
T KOG1248|consen 831 MVCLYLASNS------REIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLA-LSHDHKIKVRKKVRLLLEKLIRKFGAE 903 (1176)
T ss_pred HHHHHHhcCC------HHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHhCHH
Confidence 9999999877 67888899999988874 3789999999999999 55443 12333566788899999876
Q ss_pred -cccchhHHHHHHHHHHHhh
Q 003135 369 -VADHIPYIVSSLVAAISKH 387 (845)
Q Consensus 369 -l~p~a~~l~~~L~~~f~k~ 387 (845)
|.+|.++.--.+...+.|.
T Consensus 904 eLe~~~pee~~klL~nIRK~ 923 (1176)
T KOG1248|consen 904 ELESFLPEEDMKLLTNIRKR 923 (1176)
T ss_pred HHHhhCHHHHHHHHHHHHHH
Confidence 7788886666655555443
No 50
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=76.08 E-value=18 Score=43.96 Aligned_cols=87 Identities=17% Similarity=0.181 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccC---CCCCCc-hhhHHHHhhccCccccchhHHHHHHHHHHhc
Q 003135 289 ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPEW-YPLLQVIVGRIGYEDEENSILFELLSSVVGA 364 (845)
Q Consensus 289 ~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~---~l~p~i-~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~ 364 (845)
..++.-++.-|.|+. -|-|-.++.++.+++..- .+-..+ ..++..++..+..+..+-..+..+...++..
T Consensus 715 ~~~v~R~v~~lkde~------e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~ 788 (1172)
T KOG0213|consen 715 DPIVSRVVLDLKDEP------EQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNA 788 (1172)
T ss_pred hHHHHHHhhhhcccc------HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 345666777777765 788999999999888742 333333 3356777766665552334567889999999
Q ss_pred cccccccchhHHHHHHH
Q 003135 365 ANENVADHIPYIVSSLV 381 (845)
Q Consensus 365 ~~e~l~p~a~~l~~~L~ 381 (845)
+...+.||.++||+.+.
T Consensus 789 lg~r~kpylpqi~stiL 805 (1172)
T KOG0213|consen 789 LGGRVKPYLPQICSTIL 805 (1172)
T ss_pred HhhccccchHHHHHHHH
Confidence 99999999999988754
No 51
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=74.57 E-value=1.4 Score=35.19 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=32.7
Q ss_pred hhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhh
Q 003135 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGE 278 (845)
Q Consensus 222 ~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~ 278 (845)
|+.+.+|+.++|.++......-.+++... ...+.+.++ ++.+-+|..|||.+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~-~~~L~~~L~--d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPEL-LPALIPLLQ--DDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHH-HHHHHHHTT--SSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHH-HHHHHHHHc--CCCHHHHHHHHHHHhc
Confidence 67889999999986633222111222111 122234455 4556889999999986
No 52
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=74.13 E-value=4 Score=48.54 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=61.4
Q ss_pred hhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhhcc
Q 003135 265 LPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRI 344 (845)
Q Consensus 265 ~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~~l 344 (845)
.+=.+.-|.-+|.+|-..||. +-.+.+.+++....|.+ ..||+.|.++|-.++.+. +.++..+...|..+|
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed------~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL 105 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDED------VQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLL 105 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SS------HHHHHHHHHHGGGG--T----T-HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhccc------HHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHH
Confidence 456777888899999887764 46788999999998887 999999999999999863 223444444444445
Q ss_pred Cccc-cchhHHHHHHHHHHhc
Q 003135 345 GYED-EENSILFELLSSVVGA 364 (845)
Q Consensus 345 ~~e~-~e~d~l~~~L~~iV~~ 364 (845)
..++ .|.+.+-++|+.++..
T Consensus 106 ~tdd~~E~~~v~~sL~~ll~~ 126 (556)
T PF05918_consen 106 QTDDPVELDAVKNSLMSLLKQ 126 (556)
T ss_dssp T---HHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHhc
Confidence 5555 5788888888776654
No 53
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=71.34 E-value=19 Score=39.08 Aligned_cols=142 Identities=14% Similarity=0.185 Sum_probs=95.6
Q ss_pred cceeeeehhhhHhhhhhhHhhhhhcccc-----cchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCC-
Q 003135 257 PLYSVSVCLPYLVASANWILGELASCLP-----EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP- 330 (845)
Q Consensus 257 P~l~~~s~~p~LrarA~~~l~~f~~~l~-----~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~- 330 (845)
|.++ +..+..|+||..+++..-..+| .+...-++.-..+.|.|. +.-..|..++..++....+.
T Consensus 6 ~~Lt--sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~--------~~~~~~l~gl~~L~~~~~~~~ 75 (262)
T PF14500_consen 6 EYLT--SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH--------ACVQPALKGLLALVKMKNFSP 75 (262)
T ss_pred hhhC--CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH--------hhHHHHHHHHHHHHhCcCCCh
Confidence 4566 6889999999999887666554 344555566666777543 23344477888888766553
Q ss_pred CCchhhHHHHhhccCccc---cchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHH
Q 003135 331 PEWYPLLQVIVGRIGYED---EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALA 407 (845)
Q Consensus 331 p~i~~llq~Ll~~l~~e~---~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~ 407 (845)
.....+++.+++.+.... ++--.+.+.+..+++++.+.+...+...+.. |++.+..--+ |+..-..|+-+-
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~----~i~~~~gEkD--PRnLl~~F~l~~ 149 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYG----FIQLIDGEKD--PRNLLLSFKLLK 149 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHH----HHHHhccCCC--HHHHHHHHHHHH
Confidence 346677888877444332 2334478899999999998886555555554 4455566666 487778888888
Q ss_pred HHHHhhh
Q 003135 408 LMAQSWE 414 (845)
Q Consensus 408 ~~~~~~~ 414 (845)
.+.+.+.
T Consensus 150 ~i~~~~~ 156 (262)
T PF14500_consen 150 VILQEFD 156 (262)
T ss_pred HHHHhcc
Confidence 8887764
No 54
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=70.68 E-value=2.7 Score=38.25 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=47.1
Q ss_pred ehhhhHhhhhhhHhhhhhcccc---cchhh-HHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccC
Q 003135 263 VCLPYLVASANWILGELASCLP---EDISA-DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 327 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~---~~~l~-~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~ 327 (845)
++.+.+|..|++.++.++...+ ..... .+++.+++.|.+++ ..|+-.|+.||.++....
T Consensus 18 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~------~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 18 SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED------EEVVKAALWALRNLAAGP 80 (120)
T ss_pred cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC------HHHHHHHHHHHHHHccCc
Confidence 4568999999999999987532 22222 78899999998876 889999999999998754
No 55
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=69.98 E-value=1.7 Score=54.07 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=9.0
Q ss_pred cccccccccchhhHHHHH
Q 003135 792 IELGSLDEVDQLKVVASS 809 (845)
Q Consensus 792 ~~l~~lD~v~~~~~~~~~ 809 (845)
.+....|.+.+..+.-.+
T Consensus 1792 geia~~dRieVq~ataeS 1809 (3015)
T KOG0943|consen 1792 GEIASGDRIEVQAATAES 1809 (3015)
T ss_pred ccccccceeEEeeccccc
Confidence 334455555555554443
No 56
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=69.79 E-value=42 Score=40.14 Aligned_cols=90 Identities=20% Similarity=0.260 Sum_probs=54.1
Q ss_pred HhhccccceeeeehhhhHhhhhhhH---hhhhhcc-cccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc-
Q 003135 251 VRSRVLPLYSVSVCLPYLVASANWI---LGELASC-LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE- 325 (845)
Q Consensus 251 l~~~VlP~l~~~s~~p~LrarA~~~---l~~f~~~-l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~- 325 (845)
....|+-.|+. .+.||=+..|--+ ++.+... +++..-..+|.+++.+++.++.++ .++.. +....+-
T Consensus 522 v~~kil~~~~D-e~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~--~~il~-----~f~tv~vs 593 (975)
T COG5181 522 VSRKILEYYSD-EPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV--GLILP-----CFSTVLVS 593 (975)
T ss_pred HHHHHHhhccC-CcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc--cEEEe-----cccceeee
Confidence 33445555664 6677766655543 3333333 677777889999999999876220 11111 0011111
Q ss_pred cC-CCCCCchhhHHHHhhccCccc
Q 003135 326 ND-YMPPEWYPLLQVIVGRIGYED 348 (845)
Q Consensus 326 ~~-~l~p~i~~llq~Ll~~l~~e~ 348 (845)
.+ ..+|++++++..+++.|.+..
T Consensus 594 l~~r~kp~l~~ivStiL~~L~~k~ 617 (975)
T COG5181 594 LEFRGKPHLSMIVSTILKLLRSKP 617 (975)
T ss_pred hhhccCcchHHHHHHHHHHhcCCC
Confidence 11 468999999999999887654
No 57
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=69.73 E-value=76 Score=38.90 Aligned_cols=233 Identities=17% Similarity=0.126 Sum_probs=126.8
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhc-cccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSR-VLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKAL 299 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~-VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L 299 (845)
--|..+.++-++|.+++...+. -+.-|.+=--+ ++-.|. +-..=+|..|...+|..+...-++ .++..+++.|
T Consensus 896 heKVqen~IdLvg~IadrgpE~-v~aREWMRIcfeLlelLk--ahkK~iRRaa~nTfG~IakaIGPq---dVLatLlnnL 969 (1172)
T KOG0213|consen 896 HEKVQENCIDLVGTIADRGPEY-VSAREWMRICFELLELLK--AHKKEIRRAAVNTFGYIAKAIGPQ---DVLATLLNNL 969 (1172)
T ss_pred HHHHHHHHHHHHHHHHhcCccc-CCHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhHHHHhcCHH---HHHHHHHhcc
Confidence 3477899999999999875541 11113221111 111222 345578888999999999887433 3677788888
Q ss_pred hhcCCCCCcccceeeccchhhhhhhccCCCCC--CchhhHHHHhhccCccc-cchhHHHHHHHHHHhccccccccchhHH
Q 003135 300 QMLDKGDTSCYPVRASAAGAIVGLLENDYMPP--EWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYI 376 (845)
Q Consensus 300 ~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p--~i~~llq~Ll~~l~~e~-~e~d~l~~~L~~iV~~~~e~l~p~a~~l 376 (845)
..++ .--|+..+.||.-.-+. -.| .++.+|..+ .... +=---+.++|.-+.+..++.-.-|...+
T Consensus 970 kvqe------Rq~RvcTtvaIaIVaE~--c~pFtVLPalmneY----rtPe~nVQnGVLkalsf~FeyigemskdYiyav 1037 (1172)
T KOG0213|consen 970 KVQE------RQNRVCTTVAIAIVAET--CGPFTVLPALMNEY----RTPEANVQNGVLKALSFMFEYIGEMSKDYIYAV 1037 (1172)
T ss_pred hHHH------HHhchhhhhhhhhhhhh--cCchhhhHHHHhhc----cCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHh
Confidence 7766 44555555555433222 122 122222222 1111 0012256666666666555555577777
Q ss_pred HHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhhhhhHhhhhhhccccccchhhhHHHHHHHHHHHHHhhhccccc
Q 003135 377 VSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPL 456 (845)
Q Consensus 377 ~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~d~~~d~~~~~~~~~~~~ail~ti~tll~~~~~~~~~~~ 456 (845)
+..|-++++. + ..+|+ .+|+.+-..- .-...+.|| -++++.||.-+|-
T Consensus 1038 ~PlleDAlmD---r------D~vhR---qta~~~I~Hl-----------~Lg~~g~g~---eda~iHLLN~iWp------ 1085 (1172)
T KOG0213|consen 1038 TPLLEDALMD---R------DLVHR---QTAMNVIKHL-----------ALGVPGTGC---EDALIHLLNLIWP------ 1085 (1172)
T ss_pred hHHHHHhhcc---c------cHHHH---HHHHHHHHHH-----------hcCCCCcCc---HHHHHHHHHHhhh------
Confidence 7777777532 1 22443 1111110000 001234454 7788888887787
Q ss_pred ccccCCCCCcccchhHHHHHHhhhccchhhHHHhhhhhHHHHHHHhh---------hhcccccccC
Q 003135 457 ECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI---------GDWHAWEETE 513 (845)
Q Consensus 457 ~~s~~~~p~~~~~le~~l~p~~~~i~~~~~~l~~~v~ef~~~~~~ll---------~~W~~~~~~~ 513 (845)
.-++++|.++..+.+.+- -++.+ |. ..-++.|+.+=+ .-|.++..++
T Consensus 1086 -NIle~sPhviqa~~e~~e-g~r~~------Lg--~~~~~~Y~~QGLFHParkVR~~yw~vyn~my 1141 (1172)
T KOG0213|consen 1086 -NILETSPHVIQAFDEAME-GLRVA------LG--PQAMLKYCLQGLFHPARKVRKRYWTVYNSMY 1141 (1172)
T ss_pred -hhcCCChHHHHHHHHHHH-HHHHH------hc--hHHHHHHHHHhccCcHHHHHHHHHHHHHhHh
Confidence 778888887776655542 22333 22 223566777666 5688777765
No 58
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.55 E-value=1.7e+02 Score=35.87 Aligned_cols=106 Identities=17% Similarity=0.106 Sum_probs=71.2
Q ss_pred hhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcc---cccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhh
Q 003135 245 EFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC---LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIV 321 (845)
Q Consensus 245 ~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~---l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~ 321 (845)
+++.++| .|++--.- ++.-=+|-|.|-++....++ .|+..+..+...++..|.|.+ .-||++|..||.
T Consensus 81 DlV~~~f-~hlLRg~E--skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre------p~VRiqAv~aLs 151 (892)
T KOG2025|consen 81 DLVAGTF-YHLLRGTE--SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE------PNVRIQAVLALS 151 (892)
T ss_pred hHHHHHH-HHHHhccc--CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC------chHHHHHHHHHH
Confidence 3444444 45555444 67778999999999999884 588888888899999998887 889999999999
Q ss_pred hhhccCCCCCCchhhHHHHhhccCccccchhHHHHHHHHHHh
Q 003135 322 GLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVG 363 (845)
Q Consensus 322 ~~l~~~~l~p~i~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~ 363 (845)
++=..+. -+. -++...+..+|.|+- ++-+-++....+.
T Consensus 152 rlQ~d~~-dee-~~v~n~l~~liqnDp--S~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 152 RLQGDPK-DEE-CPVVNLLKDLIQNDP--SDEVRRAALSNIS 189 (892)
T ss_pred HHhcCCC-CCc-ccHHHHHHHHHhcCC--cHHHHHHHHHhhc
Confidence 9874321 111 134444444455543 5555554444443
No 59
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=67.02 E-value=4.8 Score=34.94 Aligned_cols=76 Identities=22% Similarity=0.112 Sum_probs=53.4
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHh
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~ 300 (845)
++..+..++.++|.+.+. .+.+.|... ++ +++|.+|..|++.+|++.+ .+.++.+.+.+.
T Consensus 13 ~~~vr~~a~~~L~~~~~~-------~~~~~L~~~----l~--d~~~~vr~~a~~aL~~i~~-------~~~~~~L~~~l~ 72 (88)
T PF13646_consen 13 DPQVRAEAARALGELGDP-------EAIPALIEL----LK--DEDPMVRRAAARALGRIGD-------PEAIPALIKLLQ 72 (88)
T ss_dssp SHHHHHHHHHHHHCCTHH-------HHHHHHHHH----HT--SSSHHHHHHHHHHHHCCHH-------HHTHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCH-------hHHHHHHHH----Hc--CCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHc
Confidence 577788888888855422 122333322 34 6889999999999999853 446788888887
Q ss_pred hcCCCCCcccceeeccchhhh
Q 003135 301 MLDKGDTSCYPVRASAAGAIV 321 (845)
Q Consensus 301 ~~~~~~~~~lpVrv~AA~Al~ 321 (845)
+++ +..||-.|+.||.
T Consensus 73 ~~~-----~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 73 DDD-----DEVVREAAAEALG 88 (88)
T ss_dssp C-S-----SHHHHHHHHHHHH
T ss_pred CCC-----cHHHHHHHHhhcC
Confidence 765 3788998888873
No 60
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=64.77 E-value=3.3 Score=51.23 Aligned_cols=15 Identities=20% Similarity=0.536 Sum_probs=9.7
Q ss_pred CcHHHHHHHHhhccC
Q 003135 823 LSSQLISKFLKAYPQ 837 (845)
Q Consensus 823 ~~~~~~~~~~~~~~~ 837 (845)
+-+.+..|.+++|-+
T Consensus 124 ~~e~~~~r~aee~~~ 138 (1024)
T KOG1999|consen 124 LEEELAKRYAEEYIE 138 (1024)
T ss_pred HHHHHHHHHHHhhcc
Confidence 456677777776644
No 61
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.32 E-value=5.9 Score=47.67 Aligned_cols=151 Identities=20% Similarity=0.286 Sum_probs=96.7
Q ss_pred HhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCccc
Q 003135 231 AYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCY 310 (845)
Q Consensus 231 ~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~l 310 (845)
|+++|+-+++. + +..=|..-|+-.++ +.-||+|-||.-++.+.--..|+. +..+|+-+...|.||+ +
T Consensus 129 AL~GLS~fvTp---d-LARDLa~Dv~tLL~--sskpYvRKkAIl~lykvFLkYPeA-lr~~FprL~EkLeDpD------p 195 (877)
T KOG1059|consen 129 ALSGLSCIVTP---D-LARDLADDVFTLLN--SSKPYVRKKAILLLYKVFLKYPEA-LRPCFPRLVEKLEDPD------P 195 (877)
T ss_pred eecccccccCc---h-hhHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhhHh-HhhhHHHHHHhccCCC------c
Confidence 55666655432 1 12223344455566 688999999998887654445655 8999999999999998 7
Q ss_pred ceeeccchhhhhhhccC---CCCCCchhhHHHHhhccCccccchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhh
Q 003135 311 PVRASAAGAIVGLLEND---YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKH 387 (845)
Q Consensus 311 pVrv~AA~Al~~~l~~~---~l~p~i~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~ 387 (845)
-|...|+.-|..+-+.+ |+ | +.|++-+||.-.+ .|=.|.+++.-+ ..++|+-|.|...|..-+..+
T Consensus 196 ~V~SAAV~VICELArKnPknyL-~-LAP~ffkllttSs----NNWmLIKiiKLF-----~aLtplEPRLgKKLieplt~l 264 (877)
T KOG1059|consen 196 SVVSAAVSVICELARKNPQNYL-Q-LAPLFYKLLVTSS----NNWVLIKLLKLF-----AALTPLEPRLGKKLIEPITEL 264 (877)
T ss_pred hHHHHHHHHHHHHHhhCCcccc-c-ccHHHHHHHhccC----CCeehHHHHHHH-----hhccccCchhhhhhhhHHHHH
Confidence 78888887777777632 43 2 3455555555222 244466655443 247888888888888888777
Q ss_pred cCCCCCChHHHHHHHHHHHHHHH
Q 003135 388 MHPSSEPWPQVVERGFAALALMA 410 (845)
Q Consensus 388 ~~~~~~~~~~~~~~~f~~l~~~~ 410 (845)
+..... ---+|+|+.-++
T Consensus 265 i~sT~A-----mSLlYECvNTVV 282 (877)
T KOG1059|consen 265 MESTVA-----MSLLYECVNTVV 282 (877)
T ss_pred HHhhHH-----HHHHHHHHHHhe
Confidence 766432 223456655443
No 62
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=60.34 E-value=3.8 Score=51.30 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=9.3
Q ss_pred ccccceeeeccCcceeehh
Q 003135 13 TVKDNLLRFKTGKRGLLIF 31 (845)
Q Consensus 13 ~~~~~~~~~K~kKwa~~il 31 (845)
+++.-+.+.|...|.++.+
T Consensus 790 de~~V~Ar~Kh~ergmh~~ 808 (3015)
T KOG0943|consen 790 DEKGVHARLKHGERGMHCI 808 (3015)
T ss_pred chhhhhhhhcccceeeEEE
Confidence 3444455555555555443
No 63
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.06 E-value=13 Score=45.42 Aligned_cols=127 Identities=17% Similarity=0.135 Sum_probs=77.6
Q ss_pred ehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccC-CCCCCchhhHHHHh
Q 003135 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-YMPPEWYPLLQVIV 341 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~-~l~p~i~~llq~Ll 341 (845)
.|++.+|+-|..+++-.+-. -...-++-++-+|..|+. .=||=.||+||..+..-+ .-.+.+..++..||
T Consensus 119 DpN~LiRasALRvlSsIRvp---~IaPI~llAIk~~~~D~s------~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LL 189 (968)
T KOG1060|consen 119 DPNQLIRASALRVLSSIRVP---MIAPIMLLAIKKAVTDPS------PYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLL 189 (968)
T ss_pred CCcHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHhcCCc------HHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHh
Confidence 68999999998888665542 223345667778888887 889999999999998753 44456777777776
Q ss_pred hccCccccchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHH
Q 003135 342 GRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQ 411 (845)
Q Consensus 342 ~~l~~e~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~ 411 (845)
+ +. ..-.+-.+++.+=+.+.+.+ +|+..=-..+.+++++. +.|.|++ +...|..-++
T Consensus 190 a----D~-splVvgsAv~AF~evCPerl-----dLIHknyrklC~ll~dv-deWgQvv--lI~mL~RYAR 246 (968)
T KOG1060|consen 190 A----DR-SPLVVGSAVMAFEEVCPERL-----DLIHKNYRKLCRLLPDV-DEWGQVV--LINMLTRYAR 246 (968)
T ss_pred c----CC-CCcchhHHHHHHHHhchhHH-----HHhhHHHHHHHhhccch-hhhhHHH--HHHHHHHHHH
Confidence 6 11 12234445555555554443 33333223333333333 3488875 4555555444
No 64
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.88 E-value=11 Score=44.26 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=84.7
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhcc-ccceeeeehhhhHhhhhhhHhhhhhccc--ccchhhHHHHHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRV-LPLYSVSVCLPYLVASANWILGELASCL--PEDISADVYSSLLK 297 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~V-lP~l~~~s~~p~LrarA~~~l~~f~~~l--~~~~l~~i~~~ll~ 297 (845)
.|..-||+|+.+.+++..+....++.+.+.++... +|+ +.| +|+.+|-++|.+...+ .++.+.-+.+-+.+
T Consensus 402 ~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp~-----Q~~-~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~ 475 (559)
T KOG2081|consen 402 SWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLPE-----QAP-LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQ 475 (559)
T ss_pred chHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCcc-----chh-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 59999999999999887654423333333333221 222 223 9999999999999985 56767777777777
Q ss_pred HHhhcCCCCCcccceeeccchhhhhhhcc--CCCCCCchhhHHHHhhccCccc-cchhHHHHHHHHHHhccccc
Q 003135 298 ALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANEN 368 (845)
Q Consensus 298 ~L~~~~~~~~~~lpVrv~AA~Al~~~l~~--~~l~p~i~~llq~Ll~~l~~e~-~e~d~l~~~L~~iV~~~~e~ 368 (845)
.++.. +....||+|+.+++.. ..+.+.++.+++.+........ +|...+.+.+..++.+-...
T Consensus 476 ~~~~~--------~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~e~a~l~~~~s~i~~~lp~~ 541 (559)
T KOG2081|consen 476 GLQLK--------RLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINEEAACLLQGISLIISNLPAH 541 (559)
T ss_pred Hhhhc--------chhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHh
Confidence 77654 3556677777777653 3455555555544444222222 24555777777777775554
No 65
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=56.93 E-value=62 Score=38.67 Aligned_cols=171 Identities=16% Similarity=0.074 Sum_probs=99.3
Q ss_pred hhhhhHHHHHHhhchHHHHhhh-ch--hhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQ-KS--EFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLK 297 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~-~~--~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~ 297 (845)
+...|++.+...|.++..+... ++ .+++-++. .+. .|++..|.....++..+........-..+...+.+
T Consensus 69 ~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~-----~~~--tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ 141 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLE-----ELD--TPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLE 141 (569)
T ss_pred hHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHH-----hcC--CCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHH
Confidence 5677899999999999777541 11 23344443 234 68888887666666666554433345667788888
Q ss_pred HHhhcCCCCCcccceeeccchhhhhhhccC---CCCCCchhhHHHHhhccCccc-cchh-HHHHHHHHHHhccccccccc
Q 003135 298 ALQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPEWYPLLQVIVGRIGYED-EENS-ILFELLSSVVGAANENVADH 372 (845)
Q Consensus 298 ~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~---~l~p~i~~llq~Ll~~l~~e~-~e~d-~l~~~L~~iV~~~~e~l~p~ 372 (845)
+|.... .-=|..||.++..+.... .+.+ ..++..|-+.+.+.. ..+. .-+.+......+-+....||
T Consensus 142 ll~~~~------~~~~~~aa~~~ag~v~g~~i~~~~~--~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPy 213 (569)
T KOG1242|consen 142 LLTSTK------IAERAGAAYGLAGLVNGLGIESLKE--FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPY 213 (569)
T ss_pred Hhcccc------HHHHhhhhHHHHHHHcCcHHhhhhh--hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCch
Confidence 887555 778899999999998854 3444 346666666555443 1222 22333333344444444455
Q ss_pred hhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhh
Q 003135 373 IPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (845)
Q Consensus 373 a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~ 413 (845)
...+...+...| -...+ .+-+-.+.+.-++-+|.
T Consensus 214 iv~~lp~il~~~---~d~~~----~Vr~Aa~~a~kai~~~~ 247 (569)
T KOG1242|consen 214 IVPILPSILTNF---GDKIN----KVREAAVEAAKAIMRCL 247 (569)
T ss_pred HHhhHHHHHHHh---hccch----hhhHHHHHHHHHHHHhc
Confidence 555555544444 33221 22333455555655554
No 66
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=55.37 E-value=3.9 Score=50.55 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=6.5
Q ss_pred CCcHHHHHHHHhhcc
Q 003135 822 TLSSQLISKFLKAYP 836 (845)
Q Consensus 822 ~~~~~~~~~~~~~~~ 836 (845)
.+++ +.+-|.++|.
T Consensus 120 ~~~~-~~e~~~~r~a 133 (1024)
T KOG1999|consen 120 QLNE-LEEELAKRYA 133 (1024)
T ss_pred hhhH-HHHHHHHHHH
Confidence 3444 4455555443
No 67
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=54.68 E-value=17 Score=46.34 Aligned_cols=72 Identities=22% Similarity=0.224 Sum_probs=59.1
Q ss_pred hhhHhhhhhhHhhhhhccc-ccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc---------CCCCCCch
Q 003135 265 LPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---------DYMPPEWY 334 (845)
Q Consensus 265 ~p~LrarA~~~l~~f~~~l-~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~---------~~l~p~i~ 334 (845)
.+-.|-.|+.++..++... ++..+..|++-++.++.|+. --||+.|..+|..++.. ..++.|+.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~------a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlf 509 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSE------ADVRATALETLTELLALVRDIPPSDANIFPEYLF 509 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCch------HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhh
Confidence 4566778999999999875 67779999999999999998 78999999999999862 15566777
Q ss_pred hhHHHHhh
Q 003135 335 PLLQVIVG 342 (845)
Q Consensus 335 ~llq~Ll~ 342 (845)
|-|+.|+.
T Consensus 510 P~L~~l~~ 517 (1431)
T KOG1240|consen 510 PHLNHLLN 517 (1431)
T ss_pred hhhHhhhc
Confidence 77777765
No 68
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=53.54 E-value=30 Score=44.29 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHhhcC
Q 003135 289 ADVYSSLLKALQMLD 303 (845)
Q Consensus 289 ~~i~~~ll~~L~~~~ 303 (845)
.||+..++..+..++
T Consensus 697 KQVIsTil~Ni~P~~ 711 (1640)
T KOG0262|consen 697 KQVISTILKNIIPEG 711 (1640)
T ss_pred chHHHHHHHhcCCCC
Confidence 567777777776554
No 69
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=51.88 E-value=34 Score=31.76 Aligned_cols=78 Identities=12% Similarity=0.277 Sum_probs=56.3
Q ss_pred CCCCchhhHHHHhhccCc---cc--cchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q 003135 329 MPPEWYPLLQVIVGRIGY---ED--EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGF 403 (845)
Q Consensus 329 l~p~i~~llq~Ll~~l~~---e~--~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f 403 (845)
+.+++..+++.+-..|.+ .. .+....++.|+.++...+..+.++.++|+..|...+ +. |.+-...+
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal-~~--------~~l~~~al 75 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSAL-EI--------PELREEAL 75 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-CC--------hhhHHHHH
Confidence 456667777766665544 11 356667889999999999999999999999988874 21 24555678
Q ss_pred HHHHHHHHhhhh
Q 003135 404 AALALMAQSWEN 415 (845)
Q Consensus 404 ~~l~~~~~~~~~ 415 (845)
++-..+.++.+.
T Consensus 76 ~~W~~fi~~L~~ 87 (107)
T PF08064_consen 76 SCWNCFIKTLDE 87 (107)
T ss_pred HHHHHHHHHCCH
Confidence 888888887643
No 70
>PRK09687 putative lyase; Provisional
Probab=51.76 E-value=18 Score=39.48 Aligned_cols=79 Identities=15% Similarity=0.055 Sum_probs=55.7
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHh
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~ 300 (845)
+|+.+.++.+++|.+.+. ..... +++.+. .+.+.+|..|...+|+.... -..+.+.++.+|.
T Consensus 141 ~~~VR~~a~~aLg~~~~~-------~ai~~----L~~~L~--d~~~~VR~~A~~aLg~~~~~-----~~~~~~~L~~~L~ 202 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-------AAIPL----LINLLK--DPNGDVRNWAAFALNSNKYD-----NPDIREAFVAMLQ 202 (280)
T ss_pred CHHHHHHHHHHHhccCCH-------HHHHH----HHHHhc--CCCHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHhc
Confidence 678888888888865422 11122 223345 56778999999999988321 2357788889998
Q ss_pred hcCCCCCcccceeeccchhhhhh
Q 003135 301 MLDKGDTSCYPVRASAAGAIVGL 323 (845)
Q Consensus 301 ~~~~~~~~~lpVrv~AA~Al~~~ 323 (845)
|++ ..||..|+.+|..+
T Consensus 203 D~~------~~VR~~A~~aLg~~ 219 (280)
T PRK09687 203 DKN------EEIRIEAIIGLALR 219 (280)
T ss_pred CCC------hHHHHHHHHHHHcc
Confidence 887 78999999999874
No 71
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.21 E-value=1.2e+02 Score=38.95 Aligned_cols=65 Identities=29% Similarity=0.344 Sum_probs=55.1
Q ss_pred ccccceeeeehhhhHhhhhhhHhhhhhcc-----cccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc
Q 003135 254 RVLPLYSVSVCLPYLVASANWILGELASC-----LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (845)
Q Consensus 254 ~VlP~l~~~s~~p~LrarA~~~l~~f~~~-----l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~ 325 (845)
.|.|++.+ +..+-+|.||-.++...... +..+.+..+++.+...+++.. -|+|..+..+|..+++
T Consensus 657 ~v~~~~e~-~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~------~~~~~~rl~~L~~L~~ 726 (1176)
T KOG1248|consen 657 TVDPEFEN-SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS------SPAQASRLKCLKRLLK 726 (1176)
T ss_pred HhhHHhhc-cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHHH
Confidence 67888875 45788999999999998775 456778899999999998876 8999999999999987
No 72
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=50.54 E-value=8.2 Score=41.51 Aligned_cols=166 Identities=12% Similarity=0.171 Sum_probs=97.6
Q ss_pred eeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhc----cccceee---eehhhhHhhhh
Q 003135 200 LVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSR----VLPLYSV---SVCLPYLVASA 272 (845)
Q Consensus 200 ~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~----VlP~l~~---~s~~p~LrarA 272 (845)
+++++.+-|+.-+.++- +....-..-.||.++-++|.-=. .-..|+..| +.|.++. +-++-+||-..
T Consensus 43 LLqEIisiYp~l~~~~L-t~~~snRVcnaLaLlQ~vAshpe-----tr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLts 116 (262)
T PF04078_consen 43 LLQEIISIYPALSPPNL-TARQSNRVCNALALLQCVASHPE-----TRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTS 116 (262)
T ss_dssp HHHHHHGGGGGTTTT----HHHHHHHHHHHHHHHHHHH-TT-----THHHHHHTTGGGGGHHHHH----SHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCccc-CHHHHHHHHHHHHHHHHHHcChH-----HHHHHHHcCchhhehhhhhccccccccchhhHhH
Confidence 46677777875443221 12233556677777777764311 123444444 4566653 14567999888
Q ss_pred hhHhhhhhcccccc-----hhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhhccCcc
Q 003135 273 NWILGELASCLPED-----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYE 347 (845)
Q Consensus 273 ~~~l~~f~~~l~~~-----~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~~l~~e 347 (845)
.-++|...+.=+++ .-.++++..++.|...+ -.-|+-|+--++.++.++.= |+-+. .+.
T Consensus 117 LGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gs------elSKtvAtfIlqKIL~dd~G-------L~yiC---~t~ 180 (262)
T PF04078_consen 117 LGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGS------ELSKTVATFILQKILLDDVG-------LNYIC---QTA 180 (262)
T ss_dssp HHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-------HHHHHHHHHHHHHHHHSHHH-------HHHHT---SSH
T ss_pred HHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhcc------HHHHHHHHHHHHHHHcchhH-------HHHHh---cCH
Confidence 88888887642222 23467888888887665 56777777777777765410 11111 111
Q ss_pred ccchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCC
Q 003135 348 DEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPS 391 (845)
Q Consensus 348 ~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~ 391 (845)
+ -.-.+..+|..+|....++ ..+.|..+++.++.|+..++
T Consensus 181 e-Rf~av~~vL~~mV~~l~~~---pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 181 E-RFFAVAMVLNKMVEQLVKQ---PSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp H-HHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHTTST
T ss_pred H-HHHHHHHHHHHHHHHHccC---CChhHHHHHHHHHHHHccCH
Confidence 1 2445777777777665443 35699999999999987765
No 73
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=50.51 E-value=8 Score=50.46 Aligned_cols=9 Identities=22% Similarity=0.468 Sum_probs=3.5
Q ss_pred ccccccchh
Q 003135 795 GSLDEVDQL 803 (845)
Q Consensus 795 ~~lD~v~~~ 803 (845)
|-.|.-|.|
T Consensus 201 ~~~~~~d~f 209 (2849)
T PTZ00415 201 SEVDKTDCF 209 (2849)
T ss_pred cccccccee
Confidence 333433433
No 74
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=49.60 E-value=11 Score=47.58 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=3.6
Q ss_pred HHHHHHhh
Q 003135 827 LISKFLKA 834 (845)
Q Consensus 827 ~~~~~~~~ 834 (845)
+|+|++..
T Consensus 446 iI~RIrk~ 453 (840)
T PF04147_consen 446 IIQRIRKC 453 (840)
T ss_pred HHHHHHHh
Confidence 44444443
No 75
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=47.20 E-value=12 Score=45.54 Aligned_cols=71 Identities=17% Similarity=0.103 Sum_probs=36.8
Q ss_pred ehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc-cCCCCCCchhhHHHH
Q 003135 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE-NDYMPPEWYPLLQVI 340 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~-~~~l~p~i~~llq~L 340 (845)
.+.++++.||..++...-..-|++ =..++..+++.|.+++ .-+-.-|..-|..++. |+.++..+..-+.++
T Consensus 315 D~L~~vk~raL~ti~~lL~~kPEq-E~~LL~~lVNKlGDpq------nKiaskAsylL~~L~~~HPnMK~Vvi~EIer~ 386 (988)
T KOG2038|consen 315 DPLEEVKKRALKTIYDLLTNKPEQ-ENNLLVLLVNKLGDPQ------NKIASKASYLLEGLLAKHPNMKIVVIDEIERL 386 (988)
T ss_pred ccHHHHHHHHHHHHHHHHhCCcHH-HHHHHHHHHHhcCCcc------hhhhhhHHHHHHHHHhhCCcceeehHHHHHHH
Confidence 455566666665554432222322 3456666677777766 5555555555555554 444444443333333
No 76
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.78 E-value=2e+02 Score=35.90 Aligned_cols=52 Identities=17% Similarity=0.070 Sum_probs=28.4
Q ss_pred hhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc
Q 003135 264 CLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (845)
Q Consensus 264 ~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~ 325 (845)
|-|=.|.+|-..+.....+ +. .--.+++.+..++. +.-.|+.||.++++++.
T Consensus 17 pdps~rk~aEr~L~~~e~q--~~----y~l~lL~Lv~~~~~----d~~~r~aaav~fKN~iK 68 (960)
T KOG1992|consen 17 PDPSVRKPAERALRSLEGQ--QN----YPLLLLNLVANGQQ----DPQIRVAAAVYFKNYIK 68 (960)
T ss_pred CCCccCchHHHHHHHhccC--CC----chHHHHHHHhccCc----ChhHHHHHHHHHHHHHH
Confidence 4456666777666665543 11 11222333333332 26677888888887776
No 77
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=46.06 E-value=20 Score=44.34 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=25.1
Q ss_pred ccccccc-ccccccchhhHHHHHHHhh--hh----hhhccCCCcHHHHHHHHhh
Q 003135 788 QEHDIEL-GSLDEVDQLKVVASSIERY--HN----VIMQGQTLSSQLISKFLKA 834 (845)
Q Consensus 788 ~~~e~~l-~~lD~v~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~ 834 (845)
+++|+|= ....+.+..+.|+..-.+. |+ +.-+.+.+++++.+.|.++
T Consensus 93 deee~~~n~~~e~p~~~~~~~~e~~~s~~~~k~~~~~r~~~~l~~~l~~ll~eA 146 (895)
T KOG2076|consen 93 DEEESEANETYEEPEGLKQFKGEGEKSTGTKKRGRRSRGKSKLAPELRQLLGEA 146 (895)
T ss_pred ccccchhhcccccCchhhhhhhhheecccCCccCCCCCcccccCHHHHHHHHHH
Confidence 3444443 3334478888888777532 22 2233344566676666553
No 78
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=45.37 E-value=18 Score=38.41 Aligned_cols=20 Identities=5% Similarity=-0.159 Sum_probs=8.0
Q ss_pred CCCcccHHHHHHHHHHHHhh
Q 003135 698 PGSSLLQDCYASLMEAAVQL 717 (845)
Q Consensus 698 ~~~~il~~~~~~L~~a~~~~ 717 (845)
.++.++..-+...-+++.++
T Consensus 174 ~Ygd~yn~~~~~fnK~l~~~ 193 (303)
T KOG3064|consen 174 TYGDIYNFRQHAFNKALEAR 193 (303)
T ss_pred CcCCcccchHHHHHHHHHhh
Confidence 35554433333333344433
No 79
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.31 E-value=31 Score=40.73 Aligned_cols=78 Identities=22% Similarity=0.243 Sum_probs=58.4
Q ss_pred hhhHHHHHhhccccceee---eehhhhHhhhhhhHhhhhhcccccc----hhhHHHHHHHHHHhhcCCCCCcccceeecc
Q 003135 244 SEFTANLVRSRVLPLYSV---SVCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASA 316 (845)
Q Consensus 244 ~~~~e~fl~~~VlP~l~~---~s~~p~LrarA~~~l~~f~~~l~~~----~l~~i~~~ll~~L~~~~~~~~~~lpVrv~A 316 (845)
+|-+...+..-++|.|-. ...+|-+|.-|.|.+...++...++ .-..+.+.++.+|.+++ ..|+=+|
T Consensus 99 ~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~------~~v~eQa 172 (514)
T KOG0166|consen 99 NPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPS------ADVREQA 172 (514)
T ss_pred CCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCc------HHHHHHH
Confidence 345566777777776632 1567899999999999998863221 12346777899999987 8899999
Q ss_pred chhhhhhhccC
Q 003135 317 AGAIVGLLEND 327 (845)
Q Consensus 317 A~Al~~~l~~~ 327 (845)
+-||.++.-+.
T Consensus 173 vWALgNIagds 183 (514)
T KOG0166|consen 173 VWALGNIAGDS 183 (514)
T ss_pred HHHHhccccCC
Confidence 99999998754
No 80
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=42.22 E-value=17 Score=42.42 Aligned_cols=9 Identities=44% Similarity=0.139 Sum_probs=3.8
Q ss_pred hHHHHHHHH
Q 003135 677 EIKLAVLTL 685 (845)
Q Consensus 677 D~Kl~iLgL 685 (845)
++|=|--||
T Consensus 167 ~~~dA~~Al 175 (678)
T KOG0127|consen 167 EKKDAEKAL 175 (678)
T ss_pred eHHHHHHHH
Confidence 344444443
No 81
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=40.22 E-value=45 Score=34.65 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=55.3
Q ss_pred hHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHH-HHHHHHHHhhcC
Q 003135 225 YFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADV-YSSLLKALQMLD 303 (845)
Q Consensus 225 kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i-~~~ll~~L~~~~ 303 (845)
-=.|+..++.++..+.....++++.++ ..++.-+. ++..++|..|..++..+....+ ....+ ...+..++.+.+
T Consensus 70 ~~~A~~~l~~l~~~l~~~~~~~~~~~l-~~Ll~~~~--~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn 144 (228)
T PF12348_consen 70 SKTACQLLSDLARQLGSHFEPYADILL-PPLLKKLG--DSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKN 144 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHH-HHHHHGGG-----HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHH-HHHHHHHc--cccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCC
Confidence 355667778888777653222322222 22222333 5667999999999988877654 12234 566666777776
Q ss_pred CCCCcccceeeccchhhhhhhcc
Q 003135 304 KGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 304 ~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
..||..++..+..++..
T Consensus 145 ------~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 145 ------PQVREECAEWLAIILEK 161 (228)
T ss_dssp ------HHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHHHHH
Confidence 89999999999998874
No 82
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=40.15 E-value=13 Score=46.17 Aligned_cols=92 Identities=16% Similarity=0.094 Sum_probs=64.4
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceee--eehhhhHhhhhhhHhhhhhcccccchh-hHHHHHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPEDIS-ADVYSSLLK 297 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~~l-~~i~~~ll~ 297 (845)
+|+.+=+.++.+..++..+.+ ++...+.+|.+.. ..+.|-+|-+|++.+..+...+..... ..+++.+..
T Consensus 570 ~y~~R~t~l~si~~la~v~g~-------ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~ 642 (759)
T KOG0211|consen 570 NYLVRMTTLFSIHELAEVLGQ-------EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLET 642 (759)
T ss_pred ccchhhHHHHHHHHHHHHhcc-------HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 588899999999988877653 3444444444321 267889999999999999998644333 345555555
Q ss_pred HHhhcCCCCCcccceeeccchhhhhhhc
Q 003135 298 ALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (845)
Q Consensus 298 ~L~~~~~~~~~~lpVrv~AA~Al~~~l~ 325 (845)
...|++ +=||+-|..|.+.+..
T Consensus 643 L~~d~~------~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 643 LSSDQE------LDVRYRAILAFGSIEL 664 (759)
T ss_pred hccCcc------cchhHHHHHHHHHHHH
Confidence 555665 8899999988886643
No 83
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=39.78 E-value=74 Score=29.67 Aligned_cols=79 Identities=10% Similarity=0.281 Sum_probs=57.6
Q ss_pred CCCCCchhhHHHHhhccCccc-----cchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHH
Q 003135 328 YMPPEWYPLLQVIVGRIGYED-----EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERG 402 (845)
Q Consensus 328 ~l~p~i~~llq~Ll~~l~~e~-----~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~ 402 (845)
.+.+++..+++.+-..+.+.. .|.-...+.|+.+|...+..+.++.++|+..|...+- . |.+-...
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~-----~----~eL~~~a 74 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE-----I----PELRSLA 74 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----c----hhHHHHH
Confidence 345666777777666443322 2455578889999999999999999999999988762 1 3566678
Q ss_pred HHHHHHHHHhhhh
Q 003135 403 FAALALMAQSWEN 415 (845)
Q Consensus 403 f~~l~~~~~~~~~ 415 (845)
|++...+.++.+.
T Consensus 75 l~~W~~~i~~L~~ 87 (107)
T smart00802 75 LRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHHHhCCH
Confidence 9999999987743
No 84
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.11 E-value=1.3e+02 Score=35.92 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc--cCCCCCCchhhHHHHhhccCccc----cchhHHHHHHHH
Q 003135 287 ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE--NDYMPPEWYPLLQVIVGRIGYED----EENSILFELLSS 360 (845)
Q Consensus 287 ~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~--~~~l~p~i~~llq~Ll~~l~~e~----~e~d~l~~~L~~ 360 (845)
.+.++++-++.|+.|++ .-||.||+.++-++.. ...+.++...+...+.++....+ +..+.+-+.+..
T Consensus 81 Y~~~iv~Pv~~cf~D~d------~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikd 154 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD------SQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKD 154 (675)
T ss_pred HHHHhhHHHHHhccCcc------ceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHH
Confidence 57889999999999998 8999999999999876 34777777777777777333222 234556666666
Q ss_pred HHh
Q 003135 361 VVG 363 (845)
Q Consensus 361 iV~ 363 (845)
+|-
T Consensus 155 IVt 157 (675)
T KOG0212|consen 155 IVT 157 (675)
T ss_pred hcc
Confidence 553
No 85
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.78 E-value=39 Score=41.31 Aligned_cols=119 Identities=22% Similarity=0.224 Sum_probs=73.2
Q ss_pred HHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccC--
Q 003135 250 LVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-- 327 (845)
Q Consensus 250 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~-- 327 (845)
...+.++-++. ++.|.+|+-|....+..+- +.....++.-+.+|+.+.+ ..||..||.++..+-+.+
T Consensus 86 ~avnt~~kD~~--d~np~iR~lAlrtm~~l~v---~~i~ey~~~Pl~~~l~d~~------~yvRktaa~~vakl~~~~~~ 154 (734)
T KOG1061|consen 86 LAVNTFLKDCE--DPNPLIRALALRTMGCLRV---DKITEYLCDPLLKCLKDDD------PYVRKTAAVCVAKLFDIDPD 154 (734)
T ss_pred hhhhhhhccCC--CCCHHHHHHHhhceeeEee---hHHHHHHHHHHHHhccCCC------hhHHHHHHHHHHHhhcCChh
Confidence 44455555666 6899999988876654432 4456678889999999887 899999999999998754
Q ss_pred -CCCCCchhhHHHHhhccCccccchhHHHHHH---HHHHhcccc-ccccchhHHHHHHHHHH
Q 003135 328 -YMPPEWYPLLQVIVGRIGYEDEENSILFELL---SSVVGAANE-NVADHIPYIVSSLVAAI 384 (845)
Q Consensus 328 -~l~p~i~~llq~Ll~~l~~e~~e~d~l~~~L---~~iV~~~~e-~l~p~a~~l~~~L~~~f 384 (845)
....-+.+.|..++. . . +...+..++ +.+.+.-.+ ...-....++..+....
T Consensus 155 ~~~~~gl~~~L~~ll~---D-~-~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al 211 (734)
T KOG1061|consen 155 LVEDSGLVDALKDLLS---D-S-NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL 211 (734)
T ss_pred hccccchhHHHHHHhc---C-C-CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH
Confidence 222233344444443 2 1 245555544 445554443 22223455555555443
No 86
>PRK09687 putative lyase; Provisional
Probab=36.34 E-value=67 Score=35.11 Aligned_cols=99 Identities=13% Similarity=-0.059 Sum_probs=62.7
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHh
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~ 300 (845)
++..+..|..++|.+...... .. ...+ ....+.+. .+++.+|..|.+-+|++.+ ...++.++.+|.
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~-~~---~~a~-~~l~~~~~--D~~~~VR~~a~~aLg~~~~-------~~ai~~L~~~L~ 169 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPL-YS---PKIV-EQSQITAF--DKSTNVRFAVAFALSVIND-------EAAIPLLINLLK 169 (280)
T ss_pred CHHHHHHHHHHHhcccccccc-cc---hHHH-HHHHHHhh--CCCHHHHHHHHHHHhccCC-------HHHHHHHHHHhc
Confidence 567788888888887532111 00 1111 11122234 4678899999999987653 347899999999
Q ss_pred hcCCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhhccC
Q 003135 301 MLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIG 345 (845)
Q Consensus 301 ~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~~l~ 345 (845)
+++ .-||..|+.||..+ ...-+.+...|+..+.
T Consensus 170 d~~------~~VR~~A~~aLg~~------~~~~~~~~~~L~~~L~ 202 (280)
T PRK09687 170 DPN------GDVRNWAAFALNSN------KYDNPDIREAFVAMLQ 202 (280)
T ss_pred CCC------HHHHHHHHHHHhcC------CCCCHHHHHHHHHHhc
Confidence 887 56999999999977 2222344455555443
No 87
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=36.22 E-value=11 Score=41.67 Aligned_cols=67 Identities=21% Similarity=0.316 Sum_probs=47.9
Q ss_pred cceeeeehhhhHhhhhhhHhhhhhcccccc----hhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCCC
Q 003135 257 PLYSVSVCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPP 331 (845)
Q Consensus 257 P~l~~~s~~p~LrarA~~~l~~f~~~l~~~----~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p 331 (845)
|.|+ ++---+|-.|||.++....--.++ .=..+.+.+++.|...+ +-+|=+|+-||.+.-.+..-.|
T Consensus 334 ~lLs--~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae------~k~kKEACWAisNatsgg~~~P 404 (526)
T COG5064 334 SLLS--SPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAE------YKIKKEACWAISNATSGGLNRP 404 (526)
T ss_pred HHhc--ChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHH------HHHHHHHHHHHHhhhccccCCc
Confidence 4455 566689999999998765532221 11234677888888776 9999999999999887665445
No 88
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=36.17 E-value=21 Score=36.49 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc---CCCCCCchhhHHHHhhccCccc-cchhHHHHHHHHH--
Q 003135 288 SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSV-- 361 (845)
Q Consensus 288 l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~---~~l~p~i~~llq~Ll~~l~~e~-~e~d~l~~~L~~i-- 361 (845)
+..+++-.+..|...+ -|-|+-|..++..++.+ +.+.|.+++++..+-+.|.+.. +=....+++|+.+
T Consensus 36 y~~~Lpif~dGL~Et~------~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETE------HPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hhhHHHHHHhhhhccC------ccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4456677777777776 79999999999999987 3677888888877777666544 1244456667666
Q ss_pred -HhccccccccchhHHHHHHH
Q 003135 362 -VGAANENVADHIPYIVSSLV 381 (845)
Q Consensus 362 -V~~~~e~l~p~a~~l~~~L~ 381 (845)
-+..++.+.||..+|...+.
T Consensus 110 ~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 110 SSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 45566778888777766654
No 89
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=35.29 E-value=22 Score=43.35 Aligned_cols=7 Identities=29% Similarity=0.814 Sum_probs=4.7
Q ss_pred cccccch
Q 003135 573 TWRACSC 579 (845)
Q Consensus 573 ~~~~~~~ 579 (845)
.|-+|+|
T Consensus 10 vDalcA~ 16 (622)
T PF02724_consen 10 VDALCAC 16 (622)
T ss_pred hHHHHHH
Confidence 4567777
No 90
>PF13324 GCIP: Grap2 and cyclin-D-interacting; PDB: 3AY5_A.
Probab=35.06 E-value=45 Score=36.31 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhhhhccc
Q 003135 707 YASLMEAAVQLKEVQEDE 724 (845)
Q Consensus 707 ~~~L~~a~~~~~e~~ke~ 724 (845)
...+.++++++++..++.
T Consensus 132 ~~lvkDa~~El~E~~~~~ 149 (275)
T PF13324_consen 132 RDLVKDALEELEEWDEEP 149 (275)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 556778888888876644
No 91
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.82 E-value=1.3e+02 Score=37.26 Aligned_cols=115 Identities=17% Similarity=0.064 Sum_probs=59.2
Q ss_pred HHHHHHhhchHHHHhhhchhhHHHHHhhc--cccceee-eehhhhHhhhhhhHhhhhhccc---ccchhhHHHHHHHHHH
Q 003135 226 FGVLMAYGGLQEFLREQKSEFTANLVRSR--VLPLYSV-SVCLPYLVASANWILGELASCL---PEDISADVYSSLLKAL 299 (845)
Q Consensus 226 dgaL~~ig~la~~l~~~~~~~~e~fl~~~--VlP~l~~-~s~~p~LrarA~~~l~~f~~~l---~~~~l~~i~~~ll~~L 299 (845)
|+-++.++.++..+.. .+++++++..+. .+|.+=. +..+|.||++-.-++.+|.+.+ +..+..-+|+.+ ..-
T Consensus 587 Dtk~~VL~~ls~lI~r-~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVI-el~ 664 (978)
T KOG1993|consen 587 DTKTSVLNLLSTLIER-VSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVI-ELS 664 (978)
T ss_pred hhHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHH-HHh
Confidence 4444455555444432 333333333332 2566532 3689999999999999998875 344333344444 433
Q ss_pred hhcCCCCCcccceeeccchhhh-hhhcc-CCCCCCchhhHHHHhhccC
Q 003135 300 QMLDKGDTSCYPVRASAAGAIV-GLLEN-DYMPPEWYPLLQVIVGRIG 345 (845)
Q Consensus 300 ~~~~~~~~~~lpVrv~AA~Al~-~~l~~-~~l~p~i~~llq~Ll~~l~ 345 (845)
.|++.. +.+.=.+-+..|- .++.+ +.+.|.+..+...++..|.
T Consensus 665 ~D~~sP---~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE 709 (978)
T KOG1993|consen 665 TDPSSP---EHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIE 709 (978)
T ss_pred cCCCCC---ceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence 455421 0222122222222 22333 4677777777777777554
No 92
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=34.70 E-value=33 Score=36.80 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=7.9
Q ss_pred cHHHHHHHHhhc
Q 003135 824 SSQLISKFLKAY 835 (845)
Q Consensus 824 ~~~~~~~~~~~~ 835 (845)
=++-=.+|+++|
T Consensus 231 rSdfH~kFl~Ky 242 (244)
T PF04889_consen 231 RSDFHKKFLNKY 242 (244)
T ss_pred ccHHHHHHHHHh
Confidence 356666777766
No 93
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=34.02 E-value=89 Score=35.23 Aligned_cols=93 Identities=12% Similarity=0.181 Sum_probs=59.3
Q ss_pred cceeeccchhhhhhhccC--CCCCCchhhHHHHhhccCccc--c----c-----hhHHHHHHHHHHhccccccccchhHH
Q 003135 310 YPVRASAAGAIVGLLEND--YMPPEWYPLLQVIVGRIGYED--E----E-----NSILFELLSSVVGAANENVADHIPYI 376 (845)
Q Consensus 310 lpVrv~AA~Al~~~l~~~--~l~p~i~~llq~Ll~~l~~e~--~----e-----~d~l~~~L~~iV~~~~e~l~p~a~~l 376 (845)
+.+-.+....++.++.|+ .+.||+-++|..++.++-... . + -++-.++|..++.+|+..- +.|
T Consensus 231 l~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y----~~l 306 (343)
T cd08050 231 LALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY----NTL 306 (343)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC----CcH
Confidence 566666677788888887 678999999888888663222 1 1 1234577888888887763 245
Q ss_pred HHHHHHHHHhhcCCCCCChHHHHHHH-HHHHHH
Q 003135 377 VSSLVAAISKHMHPSSEPWPQVVERG-FAALAL 408 (845)
Q Consensus 377 ~~~L~~~f~k~~~~~~~~~~~~~~~~-f~~l~~ 408 (845)
-.++..++.+.+.++..+ -..+|| ...|++
T Consensus 307 ~~ri~~tl~k~l~d~~~~--~~~~YGAi~GL~~ 337 (343)
T cd08050 307 QPRITRTLLKALLDPKKP--LTTHYGAIVGLSA 337 (343)
T ss_pred HHHHHHHHHHHHcCCCCC--cchhhHHHHHHHH
Confidence 566666666666666654 233665 344433
No 94
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=33.35 E-value=33 Score=41.63 Aligned_cols=9 Identities=33% Similarity=0.239 Sum_probs=4.4
Q ss_pred chhHHHHHH
Q 003135 675 ESEIKLAVL 683 (845)
Q Consensus 675 ~~D~Kl~iL 683 (845)
-+++|+.+-
T Consensus 150 ~lEKkl~~~ 158 (822)
T KOG2141|consen 150 GLEKKLKIK 158 (822)
T ss_pred hHHHHHhhh
Confidence 355555443
No 95
>PTZ00429 beta-adaptin; Provisional
Probab=32.68 E-value=94 Score=38.85 Aligned_cols=57 Identities=21% Similarity=0.165 Sum_probs=41.5
Q ss_pred ehhhhHhhhhhhHhhhhhcccccchh--hHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 263 VCLPYLVASANWILGELASCLPEDIS--ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l--~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
.++||+|..|+-.+.+.-.. +++.. ....+.+..+|.|++ .-|...|..+|..+...
T Consensus 151 D~~pYVRKtAalai~Kly~~-~pelv~~~~~~~~L~~LL~D~d------p~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 151 DPDPYVRKTAAMGLGKLFHD-DMQLFYQQDFKKDLVELLNDNN------PVVASNAAAIVCEVNDY 209 (746)
T ss_pred CCCHHHHHHHHHHHHHHHhh-CcccccccchHHHHHHHhcCCC------ccHHHHHHHHHHHHHHh
Confidence 68999999999999887553 22322 245666777777776 77888888888888654
No 96
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=31.42 E-value=32 Score=37.07 Aligned_cols=74 Identities=23% Similarity=0.148 Sum_probs=54.0
Q ss_pred ehhhhHhhhhhhHhhhhhcc-cccchhh--HHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccC----CCCCCchh
Q 003135 263 VCLPYLVASANWILGELASC-LPEDISA--DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND----YMPPEWYP 335 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~-l~~~~l~--~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~----~l~p~i~~ 335 (845)
+..|+++.+|...++..+.. ++++.+. ..++.+.+.|.+++ .-||..|..||.++-.+. .++.++..
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~------~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~ 97 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPN------PSVREKALNALNNLSVNDENQEQIKMYIPQ 97 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCC------hHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 57899999999999997664 3443222 35677788888887 789999999999886543 45556666
Q ss_pred hHHHHhh
Q 003135 336 LLQVIVG 342 (845)
Q Consensus 336 llq~Ll~ 342 (845)
+++.++.
T Consensus 98 Vc~~~~s 104 (254)
T PF04826_consen 98 VCEETVS 104 (254)
T ss_pred HHHHHhc
Confidence 6666655
No 97
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.74 E-value=1e+02 Score=40.85 Aligned_cols=154 Identities=14% Similarity=0.193 Sum_probs=94.6
Q ss_pred hhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeee-ehhhhHhhhhhhHhhhhhccc-c-----cchhhHHH
Q 003135 220 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVS-VCLPYLVASANWILGELASCL-P-----EDISADVY 292 (845)
Q Consensus 220 ~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~-s~~p~LrarA~~~l~~f~~~l-~-----~~~l~~i~ 292 (845)
.-|-.|=||=+-+|.++..-.. .+++++.+-|--.+.=. .|.+=+|.. +.+-|.... + ...+..|+
T Consensus 969 A~wnSk~GaAfGf~~i~~~a~~----kl~p~l~kLIPrLyRY~yDP~~~Vq~a---M~sIW~~Li~D~k~~vd~y~neIl 1041 (1702)
T KOG0915|consen 969 ATWNSKKGAAFGFGAIAKQAGE----KLEPYLKKLIPRLYRYQYDPDKKVQDA---MTSIWNALITDSKKVVDEYLNEIL 1041 (1702)
T ss_pred chhhcccchhhchHHHHHHHHH----hhhhHHHHhhHHHhhhccCCcHHHHHH---HHHHHHHhccChHHHHHHHHHHHH
Confidence 4588999999999988866543 34666665543333210 233333321 223333322 1 34577888
Q ss_pred HHHHHHHhhcCCCCCcccceeeccchhhhhhhccC---CCCCCch-----------------------------------
Q 003135 293 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND---YMPPEWY----------------------------------- 334 (845)
Q Consensus 293 ~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~---~l~p~i~----------------------------------- 334 (845)
..++..|.+.+ .-||-.++.||.-+|+-. .+...++
T Consensus 1042 ~eLL~~lt~ke------wRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~ 1115 (1702)
T KOG0915|consen 1042 DELLVNLTSKE------WRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRI 1115 (1702)
T ss_pred HHHHHhccchh------HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88889898877 999999999999999721 1111111
Q ss_pred ----------hhHHHHhhcc-----Cccccchh-HHHHHHHHHHhccccccccchhHHHHHHHHHHHh
Q 003135 335 ----------PLLQVIVGRI-----GYEDEENS-ILFELLSSVVGAANENVADHIPYIVSSLVAAISK 386 (845)
Q Consensus 335 ----------~llq~Ll~~l-----~~e~~e~d-~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k 386 (845)
+++..+|..| +....|.. .-..+++.++..++..+.||.+.|+..|.+.+-.
T Consensus 1116 ~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1116 CDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred cccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc
Confidence 2222222211 11111222 2356788899999999999999999999888733
No 98
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=29.35 E-value=1.7e+02 Score=31.57 Aligned_cols=110 Identities=14% Similarity=-0.046 Sum_probs=67.4
Q ss_pred hhhhhhHHHHHHhhchHHHHhhhchhhH-HHHHhhccccceeeeehhhhHhhhhhhHhhhhhccc-ccchhhHHHHHHHH
Q 003135 220 RIQKDYFGVLMAYGGLQEFLREQKSEFT-ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLK 297 (845)
Q Consensus 220 ~~~k~kdgaL~~ig~la~~l~~~~~~~~-e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-~~~~l~~i~~~ll~ 297 (845)
+++..++-++.++|..+.+-..+ +.+ +---..-|...+. +|+|-+|.+|++.+..++..- +...+...+..++.
T Consensus 25 ~dp~i~e~al~al~n~aaf~~nq--~~Ir~~Ggi~lI~~lL~--~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~ 100 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFNQ--DIIRDLGGISLIGSLLN--DPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCE 100 (254)
T ss_pred CChHHHHHHHHHHHhhccChhHH--HHHHHcCCHHHHHHHcC--CCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHH
Confidence 35677899999999877553221 111 1011112223344 688999999999999887763 44456666777777
Q ss_pred HHhhcCCCCCcccceeeccchhhhhhhccC----CCCCCchhhH
Q 003135 298 ALQMLDKGDTSCYPVRASAAGAIVGLLEND----YMPPEWYPLL 337 (845)
Q Consensus 298 ~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~----~l~p~i~~ll 337 (845)
...+..- +-+|+..+.++|.++--.+ .+..+++.++
T Consensus 101 ~~~s~~l----ns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll 140 (254)
T PF04826_consen 101 ETVSSPL----NSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLL 140 (254)
T ss_pred HHhcCCC----CCHHHHHHHHHHHccCCCcchhhhHHhhHHHHH
Confidence 6554321 2688888888888884332 3444444443
No 99
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=28.76 E-value=1.1e+02 Score=35.83 Aligned_cols=117 Identities=14% Similarity=0.208 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHhhcC-CCCCcccceeeccchhhhhhhc--cCCCCCCchhhHHHHhhcc----Ccccc--chhHHHHHH
Q 003135 288 SADVYSSLLKALQMLD-KGDTSCYPVRASAAGAIVGLLE--NDYMPPEWYPLLQVIVGRI----GYEDE--ENSILFELL 358 (845)
Q Consensus 288 l~~i~~~ll~~L~~~~-~~~~~~lpVrv~AA~Al~~~l~--~~~l~p~i~~llq~Ll~~l----~~e~~--e~d~l~~~L 358 (845)
...++..+...+..++ .| |.+ -.+|+-+.+. .+.+.|+...++++|...+ .|..+ =|-++++++
T Consensus 24 ~~~ll~~Lf~~i~~~~s~E--Ney-----lMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi 96 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGSAE--NEY-----LMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESI 96 (435)
T ss_dssp HHHHHHHHHHHHHTT-STC---HH-----HHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcc--chH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Confidence 5667777777775543 11 122 2345555554 3578899899998888855 23321 277789999
Q ss_pred HHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhh
Q 003135 359 SSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 414 (845)
Q Consensus 359 ~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~~ 414 (845)
..+|....+.=......+-+.|...|..++.+... .|..|.|.-|++|..+..
T Consensus 97 ~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~---EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 97 GALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQ---EFIPYVFQILAQLLELRP 149 (435)
T ss_dssp HHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-T---TTHHHHHHHHHHHHHHSS
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCC
Confidence 88887644321123346777777777777766654 589999999999987654
No 100
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=28.20 E-value=4.3e+02 Score=34.09 Aligned_cols=80 Identities=21% Similarity=0.334 Sum_probs=48.8
Q ss_pred hHHHhhhcc---cccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhhcCCCceee--cch----hhhhh
Q 003135 32 SALVTRHRK---FSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLV--SPH----FSVLL 102 (845)
Q Consensus 32 ~rl~~Ry~~---~~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~~~~~~~ll--~p~----l~~Ll 102 (845)
.++..+|.. ..++++|.++.....++...+ .....+..+++|+...++...++..+ -|| ++.++
T Consensus 53 ~~vl~kyQeqP~LLDp~L~~~v~~L~~~v~~~~-------~d~~~~~l~~e~ly~l~kvrgyK~v~k~fPh~V~~Le~il 125 (1133)
T KOG1943|consen 53 SRVLDKYQEQPHLLDPHLESIVPNLLDIVRKFT-------IDLGELHLAFEYLYILCKVRGYKAVLKLFPHQVSDLEPIL 125 (1133)
T ss_pred HHHHHHHhhchhhccchHHHHHHHHHHHHHhcc-------ccchhhHHHHHHHHHHHhhccchhhHHhCCcHHHHHHHHH
Confidence 345555554 489999999988888887632 12247788888998887764344433 476 44444
Q ss_pred hhhccchhcccccccchhhh
Q 003135 103 DKAIFPALVLNEKDISEWEE 122 (845)
Q Consensus 103 ~~vIfP~l~~~e~D~Elwe~ 122 (845)
..+= .=|+++-+.|+.
T Consensus 126 ~lL~----~~npss~~~~~~ 141 (1133)
T KOG1943|consen 126 DLLE----RQNPSSFSDWET 141 (1133)
T ss_pred HHHh----ccCcchHHHHHH
Confidence 4331 233555666653
No 101
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=27.82 E-value=26 Score=44.35 Aligned_cols=6 Identities=0% Similarity=0.091 Sum_probs=2.3
Q ss_pred HHHHHH
Q 003135 805 VVASSI 810 (845)
Q Consensus 805 ~~~~~~ 810 (845)
++...+
T Consensus 446 iI~RIr 451 (840)
T PF04147_consen 446 IIQRIR 451 (840)
T ss_pred HHHHHH
Confidence 333333
No 102
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=26.70 E-value=8.8e+02 Score=28.39 Aligned_cols=71 Identities=21% Similarity=0.119 Sum_probs=49.6
Q ss_pred hhhhhhHhhhhhcccccchhhHHHH-HHHHHHhhcCCCCCcccceeeccchhhhhhhccCC---CCCCchhhHHHHhhcc
Q 003135 269 VASANWILGELASCLPEDISADVYS-SLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY---MPPEWYPLLQVIVGRI 344 (845)
Q Consensus 269 rarA~~~l~~f~~~l~~~~l~~i~~-~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~---l~p~i~~llq~Ll~~l 344 (845)
|..|...+|.+...++...+..+++ .++.+|+++. -.=|.-||..|..+..... -.+....+-..|...|
T Consensus 104 Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~s------a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 104 RIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPS------ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchh------HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 3356689999999888888899998 5899998886 5678888998988887531 1111234445555545
Q ss_pred C
Q 003135 345 G 345 (845)
Q Consensus 345 ~ 345 (845)
.
T Consensus 178 ~ 178 (441)
T PF12054_consen 178 E 178 (441)
T ss_pred c
Confidence 4
No 103
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=26.58 E-value=99 Score=33.76 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=53.4
Q ss_pred hhhhhhHHHH-HHhhchHHHHhhhchhhHHHHHhhccccceee-eehhhhHhhhhhhHhhhhhcccccch---------h
Q 003135 220 RIQKDYFGVL-MAYGGLQEFLREQKSEFTANLVRSRVLPLYSV-SVCLPYLVASANWILGELASCLPEDI---------S 288 (845)
Q Consensus 220 ~~~k~kdgaL-~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~-~s~~p~LrarA~~~l~~f~~~l~~~~---------l 288 (845)
+.||...+.- ..+.-+.. .....+.++..+--.+-|-|.- +...+-.|.++|.++..|-...+... .
T Consensus 87 ~~WK~~~~~~~~~l~w~v~--~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~ 164 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVL--SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLF 164 (282)
T ss_pred CCcccCCcccHHHHHHHHH--hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChH
Confidence 4688887543 22222111 0112333444444333344432 35688999999999999988643222 4
Q ss_pred hHHHHHHHHHHh--------hcCCCCCcccceeeccchhhhhhhc
Q 003135 289 ADVYSSLLKALQ--------MLDKGDTSCYPVRASAAGAIVGLLE 325 (845)
Q Consensus 289 ~~i~~~ll~~L~--------~~~~~~~~~lpVrv~AA~Al~~~l~ 325 (845)
.-+.+++.+||. ++. +.+=-.|=-|+..++.
T Consensus 165 ~v~~~al~~~L~~LP~~tp~~~s------~~Ll~~ay~~L~~L~~ 203 (282)
T PF10521_consen 165 SVFEDALFPCLYYLPPITPEDES------LELLQAAYPALLSLLK 203 (282)
T ss_pred HHHHHHHHHHhhcCCCCCCchhh------HHHHHHHHHHHHHHHH
Confidence 445566677776 222 5554455556666644
No 104
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=26.27 E-value=91 Score=31.96 Aligned_cols=17 Identities=53% Similarity=0.606 Sum_probs=15.5
Q ss_pred cceeeccchhhhhhhcc
Q 003135 310 YPVRASAAGAIVGLLEN 326 (845)
Q Consensus 310 lpVrv~AA~Al~~~l~~ 326 (845)
.-||..|+.++..+++.
T Consensus 54 ~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 54 PKVRAAAASALAALLEG 70 (182)
T ss_pred hhHHHHHHHHHHHHHHc
Confidence 88999999999999984
No 105
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=26.25 E-value=22 Score=43.84 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHhh
Q 003135 488 EELKLSELLLVWADLI 503 (845)
Q Consensus 488 l~~~v~ef~~~~~~ll 503 (845)
++.++..+|.-+|+|-
T Consensus 239 ~k~r~~~i~~klC~l~ 254 (713)
T PF03344_consen 239 LKKRMVKIYEKLCELT 254 (713)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 4444455555555555
No 106
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=26.05 E-value=2e+02 Score=32.11 Aligned_cols=63 Identities=13% Similarity=0.277 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhh
Q 003135 351 NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (845)
Q Consensus 351 ~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~ 413 (845)
...+..++..+|.+.++.+.|..+.+...+-...+..+.+.-+.+|.+-...|+-|.++.+.+
T Consensus 89 ~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~ 151 (319)
T PF08767_consen 89 EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHC 151 (319)
T ss_dssp -HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHh
Confidence 344778999999999999999999999999999999999888888999998999999998843
No 107
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=25.96 E-value=41 Score=41.05 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=12.8
Q ss_pred ccchhhHHHHHHHHHHhh
Q 003135 42 SDKLMPDIMNSVLQIVKY 59 (845)
Q Consensus 42 ~~~~~p~~l~~~l~ll~~ 59 (845)
.+.|-..|++.+...++.
T Consensus 102 ke~~~G~F~~~W~~~l~~ 119 (960)
T KOG1189|consen 102 KEKFQGEFMESWNKRLEA 119 (960)
T ss_pred ccccchhHHHHHHHHhhh
Confidence 566777888887776654
No 108
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=25.81 E-value=3.2e+02 Score=32.85 Aligned_cols=104 Identities=17% Similarity=0.092 Sum_probs=62.1
Q ss_pred hhHhhhhhcc-cccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc-C----CCCCCchh-----------
Q 003135 273 NWILGELASC-LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-D----YMPPEWYP----------- 335 (845)
Q Consensus 273 ~~~l~~f~~~-l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~-~----~l~p~i~~----------- 335 (845)
...+-.|+.. ..++.+.+..+.+-..|..+. .+.|.+|.+.|.++-.. + .--|.+..
T Consensus 285 Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~r------v~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~Ist 358 (898)
T COG5240 285 ARAVCALSEENVGSQFVDQTVSSLRTFLKSTR------VVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTIST 358 (898)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHhcch------HHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchH
Confidence 3333344333 345556777777777777776 88999999998887541 1 11122222
Q ss_pred -hHHHHhhccCccccchhHHHHHHHHHHhccccccccchhHHHHHHHHHH
Q 003135 336 -LLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAI 384 (845)
Q Consensus 336 -llq~Ll~~l~~e~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f 384 (845)
.+..|++ =++++ ..+.|++.+-.+|.-.++...-.+.+-+..|+-.|
T Consensus 359 yAITtLLK-TGt~e-~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F 406 (898)
T COG5240 359 YAITTLLK-TGTEE-TIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF 406 (898)
T ss_pred HHHHHHHH-cCchh-hHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC
Confidence 2455555 34433 46667777777777777766666666666666555
No 109
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=25.26 E-value=77 Score=35.48 Aligned_cols=19 Identities=0% Similarity=0.141 Sum_probs=7.9
Q ss_pred CcccchhHHHHHHHHHHHHH
Q 003135 671 RLSLESEIKLAVLTLAKVVE 690 (845)
Q Consensus 671 ~~~r~~D~Kl~iLgL~sLl~ 690 (845)
.|+...||=|+ +|-=+||.
T Consensus 11 ~Yk~~k~K~V~-~Aarsli~ 29 (324)
T PF05285_consen 11 QYKKSKDKGVM-MAARSLIN 29 (324)
T ss_pred HHHhhhhhHHH-HHHHHHHH
Confidence 34444444433 33344443
No 110
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=25.24 E-value=36 Score=40.78 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=7.9
Q ss_pred hhhHHHHHHHhhhhhhhc
Q 003135 802 QLKVVASSIERYHNVIMQ 819 (845)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~ 819 (845)
.+.++-+.+..+...+++
T Consensus 610 ~~A~~ah~a~d~ak~~~~ 627 (811)
T KOG4364|consen 610 LQALTAHAAKDTAKLIIC 627 (811)
T ss_pred HHHHHHHHhhhhHHHhhh
Confidence 344454554444434443
No 111
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.14 E-value=1.2e+02 Score=37.56 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=56.7
Q ss_pred HHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 249 NLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 249 ~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
-++.|-+-.+|+ ++.-|..+-|.-.+|.. .++++...+++.+-+.|+.++ .-||=-|+.|.-++++.
T Consensus 106 lLltNslknDL~--s~nq~vVglAL~alg~i---~s~EmardlapeVe~Ll~~~~------~~irKKA~Lca~r~irK 172 (866)
T KOG1062|consen 106 LLLTNSLKNDLN--SSNQYVVGLALCALGNI---CSPEMARDLAPEVERLLQHRD------PYIRKKAALCAVRFIRK 172 (866)
T ss_pred HHHHHHHHhhcc--CCCeeehHHHHHHhhcc---CCHHHhHHhhHHHHHHHhCCC------HHHHHHHHHHHHHHHHc
Confidence 467777888898 67779988888777665 458899999999999999887 88999999999999984
No 112
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=25.12 E-value=55 Score=37.22 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=43.5
Q ss_pred hhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhh
Q 003135 272 ANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 342 (845)
Q Consensus 272 A~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~ 342 (845)
|..++.+|-..||. .....+.+-+.+..|.+ +-||++|..-|..|+.. ...+.+.++|..||.
T Consensus 44 asq~ip~~fk~fp~-la~~a~da~~d~~ed~d------~~ir~qaik~lp~fc~~-d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 44 ASQFIPRFFKHFPS-LADEAIDAQLDLCEDDD------VGIRRQAIKGLPLFCKG-DALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHHHhhCch-hhhHHHHhhhccccccc------hhhHHHHHhccchhccC-chhhhhHHHHHHHHH
Confidence 34455555444432 34556777777777766 99999999999999987 445666677766666
No 113
>PHA02608 67 prohead core protein; Provisional
Probab=24.43 E-value=53 Score=28.62 Aligned_cols=8 Identities=63% Similarity=0.825 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 003135 706 CYASLMEA 713 (845)
Q Consensus 706 ~~~~L~~a 713 (845)
.|.+.+.+
T Consensus 19 ~F~~~Me~ 26 (80)
T PHA02608 19 EFASIMEA 26 (80)
T ss_pred HHHHHHHH
Confidence 35554444
No 114
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.42 E-value=1.3e+02 Score=35.81 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=36.6
Q ss_pred ccccceeeeehhhhHhhhhhhHhhhhhcccccc---hhhHHHHHHHHHHhhcC
Q 003135 254 RVLPLYSVSVCLPYLVASANWILGELASCLPED---ISADVYSSLLKALQMLD 303 (845)
Q Consensus 254 ~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~---~l~~i~~~ll~~L~~~~ 303 (845)
...|.++ +++|+++..|..-+..|....+.+ ++..++.+++.|+.+.+
T Consensus 254 vlv~~l~--ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e 304 (675)
T KOG0212|consen 254 VLVPHLQ--SSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTE 304 (675)
T ss_pred hcccccc--CCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCc
Confidence 4456677 899999999998888988865443 36677788888887664
No 115
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.41 E-value=2.3e+02 Score=34.85 Aligned_cols=162 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred hHhhhhhcc--cc---cchhhHHHHHH-HHHHhhcCCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhhccCcc
Q 003135 274 WILGELASC--LP---EDISADVYSSL-LKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYE 347 (845)
Q Consensus 274 ~~l~~f~~~--l~---~~~l~~i~~~l-l~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~~l~~e 347 (845)
.+++.|.++ .+ ++++..++..+ -+.|+.++ .-||..|| .++-.++. |..+
T Consensus 152 ~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~N------s~VrsnAa-----------------~lf~~~fP-~~dp 207 (1005)
T KOG1949|consen 152 EVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARN------SEVRSNAA-----------------LLFVEAFP-IRDP 207 (1005)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCc------hhhhhhHH-----------------HHHHHhcc-CCCC
Q ss_pred c---cchhHHHH----HHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhhhhhHhh
Q 003135 348 D---EENSILFE----LLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREE 420 (845)
Q Consensus 348 ~---~e~d~l~~----~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~d~ 420 (845)
+ ++.|.+++ .|+.+.+.--..+..-|..=+.....-|+.+++++.-. ....++|..++-
T Consensus 208 d~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~--~ll~kI~d~~a~------------ 273 (1005)
T KOG1949|consen 208 DLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILI--DLLKKITDELAF------------ 273 (1005)
T ss_pred CccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHhhh------------
Q ss_pred hhhhccccccchhhhHHHHHHHHHHHHHhhhcccccccccCCCCCcccchhHHHHHHhhhccchhhHHHhhhhhHHHHHH
Q 003135 421 VELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWA 500 (845)
Q Consensus 421 ~~d~~~~~~~~~~~~ail~ti~tll~~~~~~~~~~~~~s~~~~p~~~~~le~~l~p~~~~i~~~~~~l~~~v~ef~~~~~ 500 (845)
|...+.-.++++.+.-++ .+|.+..-+|+.| |.+.+. +..+.+..=-..-
T Consensus 274 -------dt~s~VR~svf~gl~~~l----------------~np~sh~~le~~L-pal~~~------l~D~se~VRvA~v 323 (1005)
T KOG1949|consen 274 -------DTSSDVRCSVFKGLPMIL----------------DNPLSHPLLEQLL-PALRYS------LHDNSEKVRVAFV 323 (1005)
T ss_pred -------ccchheehhHhcCcHHHH----------------cCccchhHHHHHH-Hhcchh------hhccchhHHHHHH
Q ss_pred Hhh
Q 003135 501 DLI 503 (845)
Q Consensus 501 ~ll 503 (845)
+++
T Consensus 324 d~l 326 (1005)
T KOG1949|consen 324 DML 326 (1005)
T ss_pred HHH
No 116
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=24.31 E-value=41 Score=35.47 Aligned_cols=170 Identities=12% Similarity=0.122 Sum_probs=89.0
Q ss_pred eeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceee---eehhhhHhhhhhhHhh
Q 003135 201 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV---SVCLPYLVASANWILG 277 (845)
Q Consensus 201 v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~---~s~~p~LrarA~~~l~ 277 (845)
++++++-|...+.+.- +.........||.++.++++.=.. ++-++..-+--++.|.+.. .+++-+||-.+.=++|
T Consensus 94 LqEiisvYpiL~p~~l-~~~~snRvcnaL~lLQclaShPet-k~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIg 171 (315)
T COG5209 94 LQEIISVYPILSPSKL-DERESNRVCNALNLLQCLASHPET-KKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIG 171 (315)
T ss_pred HHHHHhhhhccCcccc-CchhhhHHHHHHHHHHHHhcCcch-heeeeecccceeeHhhhhccccCCccceeeehHHHHHH
Confidence 5556666654332111 112234567788888887754222 2222222223344566653 2678899999999998
Q ss_pred hhhcccccc-----hhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhhccCccccchh
Q 003135 278 ELASCLPED-----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENS 352 (845)
Q Consensus 278 ~f~~~l~~~-----~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~~l~~e~~e~d 352 (845)
.+...=++. .-.++++..++-+...+ =--++-|+--++.++.++.=-.++-+.+++.-.
T Consensus 172 aLvkNdsq~vi~fLltTeivPLcLrIme~gS------ElSktvaifI~qkil~dDvGLqYiCqT~eRFyA---------- 235 (315)
T COG5209 172 ALVKNDSQYVIKFLLTTEIVPLCLRIMELGS------ELSKTVAIFIFQKILGDDVGLQYICQTFERFYA---------- 235 (315)
T ss_pred HHHhCCCHHHHHHHHhhhHHHHHHHHHHhhh------HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH----------
Confidence 876531221 23356666666665433 122344444455555554433344444443333
Q ss_pred HHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCC
Q 003135 353 ILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSS 392 (845)
Q Consensus 353 ~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~ 392 (845)
+..++..+|++. +.-.+..+..+...+++|+..++.
T Consensus 236 -v~~vln~mv~ql---Vs~~~~RLlKh~iRcYlRLsd~p~ 271 (315)
T COG5209 236 -VNLVLNSMVSQL---VSLGSTRLLKHAIRCYLRLSDKPH 271 (315)
T ss_pred -HHHHHHHHHHHH---hhccchhHHHHHHHHheeecCCHh
Confidence 222222223222 233556788888889999877753
No 117
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=24.03 E-value=41 Score=30.45 Aligned_cols=63 Identities=21% Similarity=0.131 Sum_probs=49.9
Q ss_pred cccceeeeehhhhHhhhhhhHhhhhhcc-c-ccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc
Q 003135 255 VLPLYSVSVCLPYLVASANWILGELASC-L-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (845)
Q Consensus 255 VlP~l~~~s~~p~LrarA~~~l~~f~~~-l-~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~ 325 (845)
++-+++ +|.|-+||.|.-.++++-.. - +......++..++..|.+++ -=|...|..++..+.+
T Consensus 8 al~~L~--dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~D------syVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 8 ALSDLN--DPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDED------SYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHcc--CCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCC------chHHHHHHHHHHHHHH
Confidence 344566 67788999999999998775 3 55567889999999999987 6688888888887766
No 118
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=23.08 E-value=43 Score=35.74 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 003135 705 DCYASLMEA 713 (845)
Q Consensus 705 ~~~~~L~~a 713 (845)
.+|...+.+
T Consensus 184 ~~fnK~l~~ 192 (303)
T KOG3064|consen 184 HAFNKALEA 192 (303)
T ss_pred HHHHHHHHh
Confidence 333333333
No 119
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.52 E-value=47 Score=40.81 Aligned_cols=82 Identities=22% Similarity=0.193 Sum_probs=53.7
Q ss_pred ccccceee--eehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCCC
Q 003135 254 RVLPLYSV--SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPP 331 (845)
Q Consensus 254 ~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p 331 (845)
.|+++|+. .+++.-+-+.|...+|.++...- ..-..++.+++.+|.+.+ --|-.+|+..|+.+++.+. +
T Consensus 392 ~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-sv~~tCL~gLv~Llsshd------e~Vv~eaV~vIk~Llq~~p--~ 462 (968)
T KOG1060|consen 392 EILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-SVTDTCLNGLVQLLSSHD------ELVVAEAVVVIKRLLQKDP--A 462 (968)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-chhhHHHHHHHHHHhccc------chhHHHHHHHHHHHHhhCh--H
Confidence 35666653 13333466788888888888631 123458888888888776 3455888999999998652 2
Q ss_pred CchhhHHHHhhcc
Q 003135 332 EWYPLLQVIVGRI 344 (845)
Q Consensus 332 ~i~~llq~Ll~~l 344 (845)
....+++.|.+.+
T Consensus 463 ~h~~ii~~La~ll 475 (968)
T KOG1060|consen 463 EHLEILFQLARLL 475 (968)
T ss_pred HHHHHHHHHHHHh
Confidence 3355677777744
No 120
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=22.18 E-value=1.2e+02 Score=36.55 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=8.8
Q ss_pred cccchhhHHHHHHH
Q 003135 798 DEVDQLKVVASSIE 811 (845)
Q Consensus 798 D~v~~~~~~~~~~~ 811 (845)
....+|..+.+.++
T Consensus 304 ~~~~lf~~Ll~~F~ 317 (563)
T PF05327_consen 304 NADSLFNTLLSIFE 317 (563)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34566766666665
No 121
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=21.53 E-value=41 Score=25.03 Aligned_cols=29 Identities=28% Similarity=0.196 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhcCCCCCcccceeeccchhhhhhh
Q 003135 290 DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 324 (845)
Q Consensus 290 ~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l 324 (845)
.+++.++++|.+++ .-|+-.|+.||.++.
T Consensus 12 g~i~~Lv~ll~~~~------~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPD------PEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSS------HHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCC------HHHHHHHHHHHHHHh
Confidence 46888999999776 889999999999874
No 122
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.20 E-value=55 Score=32.95 Aligned_cols=6 Identities=0% Similarity=0.019 Sum_probs=2.6
Q ss_pred hhHHHH
Q 003135 676 SEIKLA 681 (845)
Q Consensus 676 ~D~Kl~ 681 (845)
-+|+.+
T Consensus 131 r~RRt~ 136 (227)
T KOG3241|consen 131 RDRRTL 136 (227)
T ss_pred HHHHHH
Confidence 444433
No 123
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=20.87 E-value=1.3e+02 Score=32.35 Aligned_cols=165 Identities=10% Similarity=0.097 Sum_probs=82.3
Q ss_pred eeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhc----cccceee---eehhhhHhhhhh
Q 003135 201 VLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSR----VLPLYSV---SVCLPYLVASAN 273 (845)
Q Consensus 201 v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~----VlP~l~~---~s~~p~LrarA~ 273 (845)
++++++-|.....++. +.....+..-||.++-+++.-=.+ --.|+..| +.|.+.. +.++-+||-.+.
T Consensus 73 LqEivaiYp~l~p~~l-~~~qsnRVcnaL~LlQcvASHpdT-----r~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsL 146 (293)
T KOG3036|consen 73 LQEIVAIYPSLSPPTL-TPAQSNRVCNALALLQCVASHPDT-----RRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSL 146 (293)
T ss_pred HHHHHhcccccCCCCC-CccccchHHHHHHHHHHHhcCcch-----HHHHHHccChhhhHHhhhccccCCchHHHhHHHH
Confidence 5666676764433322 223455667788888887743211 13455544 4566653 367889999999
Q ss_pred hHhhhhhcccccc-----hhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhhccCccc
Q 003135 274 WILGELASCLPED-----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED 348 (845)
Q Consensus 274 ~~l~~f~~~l~~~-----~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~~l~~e~ 348 (845)
=+||.+.+.=+++ .-.+|++..++-+.... =--++-|+--++.++-++.=-.|+=+..+
T Consensus 147 GVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GS------elSKtvA~fIlqKIlldD~GL~YiCqt~e---------- 210 (293)
T KOG3036|consen 147 GVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGS------ELSKTVATFILQKILLDDVGLYYICQTAE---------- 210 (293)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhccc------HHHHHHHHHHHHHHhhccccHHHHHHhHH----------
Confidence 9998876642222 12234444444443322 11122222222222222211111111111
Q ss_pred cchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCC
Q 003135 349 EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPS 391 (845)
Q Consensus 349 ~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~ 391 (845)
-...+..++..+|....+. -.+.+..+.+..++|+..++
T Consensus 211 -RF~av~~~L~kmv~~l~~~---ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 211 -RFSAVALVLGKMVFQLVSM---PSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred -HHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhcCCH
Confidence 1222344444444433221 34688899999999986654
No 124
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=20.85 E-value=1.4e+02 Score=37.59 Aligned_cols=88 Identities=19% Similarity=0.278 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc--CCCCCCchhhHHHHhhccCccccch------hHHHHHHH
Q 003135 288 SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEEN------SILFELLS 359 (845)
Q Consensus 288 l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~--~~l~p~i~~llq~Ll~~l~~e~~e~------d~l~~~L~ 359 (845)
+..+++.++.+|..++ +.||+++-.+|+.++.. ..+.-++..++-.++. |+..- +| +.-.++|.
T Consensus 907 ~~~LlPLLLq~Ls~~D------~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLs-ls~~~-~n~~~~VR~~ALqcL~ 978 (1030)
T KOG1967|consen 907 FPMLLPLLLQALSMPD------VIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLS-LSSDN-DNNMMVVREDALQCLN 978 (1030)
T ss_pred hhhHHHHHHHhcCCCc------cchhhhHhhhhhHHHHhccccchHHHhHHHHHHHh-cCCCC-CcchhHHHHHHHHHHH
Confidence 7789999999999998 99999999999999863 3667788888888888 66543 22 12245555
Q ss_pred HHHh-ccccccccchhHHHHHHHHH
Q 003135 360 SVVG-AANENVADHIPYIVSSLVAA 383 (845)
Q Consensus 360 ~iV~-~~~e~l~p~a~~l~~~L~~~ 383 (845)
.+.+ .=...+.||-+++++.|...
T Consensus 979 aL~~~~P~~~l~~fr~~Vl~al~k~ 1003 (1030)
T KOG1967|consen 979 ALTRRLPTKSLLSFRPLVLRALIKI 1003 (1030)
T ss_pred HHhccCCCcccccccHHHHHHhhhc
Confidence 5555 33334677777777665543
No 125
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.79 E-value=74 Score=35.73 Aligned_cols=99 Identities=22% Similarity=0.138 Sum_probs=66.3
Q ss_pred hhhhhhHHHHHHhhchHHHHhhhchhhH-HHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccc--cch--hhHHHHH
Q 003135 220 RIQKDYFGVLMAYGGLQEFLREQKSEFT-ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP--EDI--SADVYSS 294 (845)
Q Consensus 220 ~~~k~kdgaL~~ig~la~~l~~~~~~~~-e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~--~~~--l~~i~~~ 294 (845)
.....|++||--+--+...+.. ..++. -.++.-. +-.+. +..+=||++|.|++|+-..--| ++. =...++.
T Consensus 95 ~~le~ke~ald~Le~lve~iDn-Andl~~~ggl~~l-l~~l~--~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~ 170 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDN-ANDLISLGGLVPL-LGYLE--NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK 170 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhh-HHhHhhccCHHHH-HHHhc--CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence 3567899999888877766543 22222 1222222 22455 6788999999999999876532 111 1225677
Q ss_pred HHHHHhhcCCCCCcccceeeccchhhhhhhccC
Q 003135 295 LLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 327 (845)
Q Consensus 295 ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~ 327 (845)
++..|..++ +.-||+.|-.||..+|++.
T Consensus 171 Ll~~ls~~~-----~~~~r~kaL~AissLIRn~ 198 (342)
T KOG2160|consen 171 LLKILSSDD-----PNTVRTKALFAISSLIRNN 198 (342)
T ss_pred HHHHHccCC-----CchHHHHHHHHHHHHHhcC
Confidence 788887443 5889999999999999974
No 126
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=20.70 E-value=1.6e+02 Score=33.96 Aligned_cols=150 Identities=21% Similarity=0.215 Sum_probs=81.9
Q ss_pred hhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhc-cc------------ccchhhH
Q 003135 224 DYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS-CL------------PEDISAD 290 (845)
Q Consensus 224 ~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~-~l------------~~~~l~~ 290 (845)
.+..++.++.-+..-+.-+..+....++.+ ++-.+.+ +..+..-||++.++-.-.. .+ .+..+..
T Consensus 246 ~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~-L~~lL~~-~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~ 323 (415)
T PF12460_consen 246 LRPQALEILIWITKALVMRGHPLATELLDK-LLELLSS-PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ 323 (415)
T ss_pred hhHHHHHHHHHHHHHHHHcCCchHHHHHHH-HHHHhCC-hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH
Confidence 344555555555544333222222222221 2223332 3445666666666544411 11 3445666
Q ss_pred HHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc---CCCCCCchhhHHHHhhccCcccc-chhHHHHHHHHHHhccc
Q 003135 291 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYEDE-ENSILFELLSSVVGAAN 366 (845)
Q Consensus 291 i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~---~~l~p~i~~llq~Ll~~l~~e~~-e~d~l~~~L~~iV~~~~ 366 (845)
+++.++......+. .+|..--.||..++.+ +.+.|+++.++--|+..|..++. --....+++..+++...
T Consensus 324 ~~p~L~~~~~~~~~------~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 324 VLPKLLEGFKEADD------EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHhhcCh------hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 67777777766552 2555556677777775 36778888888778887765541 12234555566666666
Q ss_pred cccccchhHHHHHHH
Q 003135 367 ENVADHIPYIVSSLV 381 (845)
Q Consensus 367 e~l~p~a~~l~~~L~ 381 (845)
+-+.+|...|+..|.
T Consensus 398 ~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 398 ELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666654
No 127
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.60 E-value=48 Score=37.47 Aligned_cols=10 Identities=10% Similarity=0.282 Sum_probs=4.0
Q ss_pred chhhHHHHHH
Q 003135 801 DQLKVVASSI 810 (845)
Q Consensus 801 ~~~~~~~~~~ 810 (845)
|+|..|...+
T Consensus 366 d~y~~F~~~v 375 (514)
T KOG3130|consen 366 DIYRAFVDVV 375 (514)
T ss_pred hhhhhheecc
Confidence 3444443333
No 128
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=20.20 E-value=34 Score=42.54 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHhcccccc-ccchh
Q 003135 350 ENSILFELLSSVVGAANENV-ADHIP 374 (845)
Q Consensus 350 e~d~l~~~L~~iV~~~~e~l-~p~a~ 374 (845)
-.|.+.++....|+....-+ .||.-
T Consensus 319 ~~e~iw~v~~~~v~~~~~~~P~PfgW 344 (787)
T PF03115_consen 319 VSETIWQVVDTAVDAAASVLPPPFGW 344 (787)
T ss_dssp --------------------------
T ss_pred ccceEEEEccchhhhhhhcCCCCcch
Confidence 36777888888776555444 45653
Done!