Query 003135
Match_columns 845
No_of_seqs 247 out of 601
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 14:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 100.0 7.2E-58 2.5E-62 570.8 5.1 562 13-719 252-872 (960)
2 4fdd_A Transportin-1; heat rep 99.7 4.3E-17 1.5E-21 200.4 12.1 325 19-414 227-560 (852)
3 2x1g_F Cadmus; transport prote 99.7 5.4E-18 1.8E-22 211.3 -0.3 301 25-390 310-643 (971)
4 3m1i_C Exportin-1; heat repeat 99.6 4.7E-17 1.6E-21 204.8 0.9 264 70-387 357-644 (1049)
5 2x19_B Importin-13; nuclear tr 99.6 7.1E-17 2.4E-21 200.7 1.8 323 24-414 301-652 (963)
6 2bpt_A Importin beta-1 subunit 99.2 7.9E-12 2.7E-16 152.4 7.5 290 18-387 235-553 (861)
7 1qgr_A Protein (importin beta 99.1 1.2E-11 4.2E-16 151.0 4.6 312 20-413 230-595 (876)
8 3ibv_A Exportin-T; karyopherin 98.7 9.9E-09 3.4E-13 128.0 8.5 288 70-413 345-683 (980)
9 1ibr_B P95, importin beta-1 su 98.6 1.8E-09 6.3E-14 121.3 -2.1 207 19-300 229-461 (462)
10 4hat_C Exportin-1; heat repeat 98.1 1E-06 3.5E-11 110.2 4.5 264 72-388 359-645 (1023)
11 4fdd_A Transportin-1; heat rep 97.9 4.8E-05 1.6E-09 93.2 14.5 175 220-413 333-514 (852)
12 1qgr_A Protein (importin beta 97.3 0.00054 1.9E-08 83.2 10.0 178 220-413 340-539 (876)
13 1u6g_C TIP120 protein, CAND1; 97.1 0.00069 2.4E-08 86.3 8.7 334 21-413 228-600 (1230)
14 2qk2_A LP04448P; mini spindles 97.1 0.0012 4.1E-08 68.1 8.6 177 220-415 27-209 (242)
15 2qk1_A Protein STU2; STU2P, XM 96.9 0.00095 3.3E-08 69.9 6.3 180 220-415 28-224 (249)
16 1u6g_C TIP120 protein, CAND1; 96.1 0.0079 2.7E-07 76.6 8.8 153 221-381 147-302 (1230)
17 2qk2_A LP04448P; mini spindles 96.0 0.005 1.7E-07 63.4 4.8 144 221-376 70-219 (242)
18 3gjx_A Exportin-1; transport, 95.9 0.0021 7.2E-08 80.4 2.0 162 221-388 492-671 (1073)
19 2qk1_A Protein STU2; STU2P, XM 95.2 0.0083 2.8E-07 62.6 3.1 147 221-376 74-234 (249)
20 1b3u_A Protein (protein phosph 95.1 0.0076 2.6E-07 69.3 2.7 170 221-413 255-433 (588)
21 3a6p_A Exportin-5; exportin-5, 95.0 0.028 9.7E-07 71.6 7.7 254 70-361 364-655 (1204)
22 2bpt_A Importin beta-1 subunit 94.9 0.056 1.9E-06 65.3 9.8 176 220-412 343-530 (861)
23 1ibr_B P95, importin beta-1 su 94.8 0.016 5.4E-07 64.4 4.1 113 220-344 340-460 (462)
24 1b3u_A Protein (protein phosph 92.1 0.066 2.2E-06 61.4 3.2 136 221-367 415-552 (588)
25 2vgl_B AP-2 complex subunit be 91.1 0.43 1.5E-05 55.8 8.8 109 221-345 99-212 (591)
26 2vgl_A Adaptor protein complex 90.7 0.17 5.9E-06 59.7 4.9 119 250-384 111-237 (621)
27 1xqr_A HSPBP1 protein; armadil 90.5 0.15 5E-06 54.6 3.8 94 223-326 140-239 (296)
28 2x19_B Importin-13; nuclear tr 90.5 0.71 2.4E-05 56.8 10.4 139 264-413 461-601 (963)
29 2vgl_B AP-2 complex subunit be 90.0 0.71 2.4E-05 53.9 9.4 143 221-384 62-211 (591)
30 1wa5_B Importin alpha subunit; 89.5 0.23 7.7E-06 56.9 4.5 177 221-415 312-511 (530)
31 3ibv_A Exportin-T; karyopherin 89.5 2.5 8.4E-05 52.6 14.0 119 266-385 456-588 (980)
32 2jdq_A Importin alpha-1 subuni 89.2 0.046 1.6E-06 60.6 -1.6 133 221-365 247-392 (450)
33 1w63_A Adapter-related protein 89.1 0.59 2E-05 55.0 7.8 66 250-326 107-172 (618)
34 1wa5_C Importin alpha RE-expor 87.5 0.75 2.6E-05 56.9 7.6 179 221-413 471-672 (960)
35 4db6_A Armadillo repeat protei 86.9 0.31 1E-05 48.0 2.9 94 221-326 25-126 (210)
36 4db8_A Armadillo-repeat protei 86.8 0.58 2E-05 47.3 5.1 94 222-327 68-169 (252)
37 4b8j_A Importin subunit alpha- 82.5 0.3 1E-05 55.7 0.5 134 222-365 300-445 (528)
38 4hat_C Exportin-1; heat repeat 82.0 2.1 7E-05 53.5 7.9 141 265-413 466-620 (1023)
39 2jdq_A Importin alpha-1 subuni 80.8 0.22 7.5E-06 55.0 -1.4 96 221-326 289-391 (450)
40 4db8_A Armadillo-repeat protei 80.3 1.8 6.2E-05 43.5 5.5 136 263-410 65-208 (252)
41 4db6_A Armadillo repeat protei 80.2 0.43 1.5E-05 46.9 0.7 94 221-326 67-168 (210)
42 4hxt_A De novo protein OR329; 79.0 1.1 3.8E-05 44.8 3.4 93 222-326 58-158 (252)
43 3tpo_A Importin subunit alpha- 78.9 4.4 0.00015 46.3 8.8 94 227-326 92-192 (529)
44 4b8j_A Importin subunit alpha- 78.4 2.5 8.4E-05 48.0 6.4 150 247-410 110-272 (528)
45 1w63_A Adapter-related protein 77.7 2.3 7.7E-05 49.9 6.0 126 223-366 328-454 (618)
46 3ul1_B Importin subunit alpha- 76.8 5.4 0.00018 45.4 8.7 93 228-326 74-173 (510)
47 4hxt_A De novo protein OR329; 76.6 0.94 3.2E-05 45.3 2.0 94 221-326 99-200 (252)
48 2ca6_A RAN GTPase-activating p 75.9 1 3.5E-05 49.0 2.3 12 707-718 322-333 (386)
49 1oyz_A Hypothetical protein YI 75.4 4.2 0.00014 41.8 6.7 100 221-346 104-203 (280)
50 1te4_A Conserved protein MTH18 75.2 1.1 3.8E-05 41.0 1.9 49 263-324 53-101 (131)
51 1te4_A Conserved protein MTH18 74.2 0.92 3.2E-05 41.5 1.1 77 221-323 55-131 (131)
52 3u0r_A Apoptosis inhibitor 5; 74.1 3.5 0.00012 46.6 5.8 92 263-365 39-131 (507)
53 1wa5_B Importin alpha subunit; 74.0 3.3 0.00011 47.0 6.0 96 221-326 186-287 (530)
54 2x1g_F Cadmus; transport prote 73.7 3.7 0.00013 50.5 6.7 134 267-412 479-616 (971)
55 3ul1_B Importin subunit alpha- 73.4 1.3 4.5E-05 50.5 2.4 95 222-326 288-388 (510)
56 1xqr_A HSPBP1 protein; armadil 72.7 1.4 4.7E-05 46.9 2.2 94 222-326 96-197 (296)
57 3tpo_A Importin subunit alpha- 72.7 0.97 3.3E-05 51.8 1.0 95 222-326 307-407 (529)
58 3gjx_A Exportin-1; transport, 71.0 15 0.00052 45.9 11.3 139 265-413 492-646 (1073)
59 3ltj_A Alpharep-4; protein eng 63.9 7.1 0.00024 37.8 5.1 78 221-324 58-135 (201)
60 3tjz_B Coatomer subunit gamma; 63.6 2.6 8.7E-05 46.2 1.9 66 250-326 104-169 (355)
61 2iw3_A Elongation factor 3A; a 61.4 2.9 0.0001 51.6 2.1 148 226-381 70-223 (986)
62 3ltm_A Alpha-REP4; protein eng 60.2 6 0.0002 38.7 3.8 78 221-324 63-140 (211)
63 3ltm_A Alpha-REP4; protein eng 56.0 7.5 0.00025 37.9 3.7 79 221-325 32-110 (211)
64 3ltj_A Alpharep-4; protein eng 55.0 9.1 0.00031 37.0 4.1 48 263-323 25-72 (201)
65 2vgl_A Adaptor protein complex 54.8 2.1 7.2E-05 50.4 -0.8 105 222-340 125-233 (621)
66 1oyz_A Hypothetical protein YI 46.0 12 0.00042 38.2 3.5 50 263-325 34-83 (280)
67 4fp9_B Mterf domain-containing 43.7 11 0.00036 40.9 2.7 11 704-714 264-274 (335)
68 2fv2_A RCD1 required for cell 40.7 7.8 0.00027 40.3 0.9 166 200-391 49-226 (268)
69 2z6h_A Catenin beta-1, beta-ca 38.9 35 0.0012 39.6 6.4 58 263-326 235-293 (644)
70 3tj1_A RNA polymerase I-specif 37.8 44 0.0015 39.2 6.8 21 620-640 170-190 (649)
71 1w9c_A CRM1 protein, exportin 36.1 83 0.0029 33.6 8.1 61 352-412 92-152 (321)
72 4gmo_A Putative uncharacterize 33.6 3.8 0.00013 48.7 -3.2 58 263-326 45-106 (684)
73 3now_A UNC-45 protein, SD10334 33.5 21 0.00072 43.2 3.3 137 263-412 634-783 (810)
74 2iw3_A Elongation factor 3A; a 33.2 22 0.00075 43.9 3.4 132 270-416 70-209 (986)
75 3m1i_C Exportin-1; heat repeat 32.8 41 0.0014 41.7 5.9 82 330-411 750-833 (1049)
76 2ayu_A Nucleosome assembly pro 29.1 11 0.00038 41.9 -0.2 7 651-658 311-317 (417)
77 1jdh_A Beta-catenin; beta-cate 26.1 22 0.00075 39.6 1.6 58 263-326 238-296 (529)
78 2ayu_A Nucleosome assembly pro 22.2 17 0.00058 40.4 -0.3 7 365-371 124-130 (417)
79 2z6g_A B-catenin; FULL-length, 21.5 37 0.0013 40.7 2.5 58 263-326 371-429 (780)
80 3oc3_A Helicase MOT1, MOT1; re 21.4 48 0.0016 38.4 3.1 95 288-392 297-403 (800)
81 4ady_A RPN2, 26S proteasome re 20.3 89 0.003 38.4 5.3 99 263-370 623-725 (963)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=7.2e-58 Score=570.77 Aligned_cols=562 Identities=14% Similarity=0.129 Sum_probs=438.7
Q ss_pred ccccceeeeccCcceeehhhHHHhhhcccccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhhcCCCce
Q 003135 13 TVKDNLLRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWR 92 (845)
Q Consensus 13 ~~~~~~~~~K~kKwa~~il~rl~~Ry~~~~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~~~~~~~ 92 (845)
++++..+|||+|||+++++++++.||.+.+.+|++.|++.+|+++.. +. ..+.+++++.++++|++.+++.+.+|+
T Consensus 252 d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~--~~--~~~~~~~~~~~al~fl~~~~~~~~~~~ 327 (960)
T 1wa5_C 252 ETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTS--IS--NQPKYDILVSKSLSFLTAVTRIPKYFE 327 (960)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--CC--SCTTSHHHHHHHHHHHHHHHTSHHHHG
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC--CCcCcHHHHHHHHHHHHHHhCcHhHHH
Confidence 45677899999999999999999999999999999999999999986 32 346789999999999999999999999
Q ss_pred eec--chhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchheeeeecCCCCCCC
Q 003135 93 LVS--PHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGT 170 (845)
Q Consensus 93 ll~--p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~L~~~~~~~~~~ 170 (845)
+++ |++..|++.+|+|+|+++++|+|+|++||+||||++.| .+|.+|+|+||.++|..|
T Consensus 328 ~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e---------~~d~~s~R~aa~~~L~~l---------- 388 (960)
T 1wa5_C 328 IFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLE---------GSDTDTRRRACTDFLKEL---------- 388 (960)
T ss_dssp GGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHH---------C----CHHHHHHHHHHHH----------
T ss_pred HHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccC---------cccccCcHHHHHHHHHHH----------
Confidence 998 99999999999999999999999999999999999876 356789999999999996
Q ss_pred CCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhhc---hh--
Q 003135 171 PSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQK---SE-- 245 (845)
Q Consensus 171 ~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~~---~~-- 245 (845)
+.++++.+ .+ .+++ ++.+++++|..++ ..+|+.||||++++|+++..+.... ..
T Consensus 389 -------~~~~~~~v-----~~-~~l~--~i~~~l~~~~~~~------~~~w~~reaal~algaia~~~~~~~~~~~~~~ 447 (960)
T 1wa5_C 389 -------KEKNEVLV-----TN-IFLA--HMKGFVDQYMSDP------SKNWKFKDLYIYLFTALAINGNITNAGVSSTN 447 (960)
T ss_dssp -------HHHCHHHH-----HH-HHHH--HHHHHHHHHHC----------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBC
T ss_pred -------HHHcchhH-----HH-HHHH--HHHHHHHHhccCc------chhHHHHHHHHHHHHHHHHHhccccCCccccc
Confidence 66666442 22 2444 5777788776532 3479999999999999986542111 11
Q ss_pred ---hHHHHHhhccccceeeeeh---hhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchh
Q 003135 246 ---FTANLVRSRVLPLYSVSVC---LPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGA 319 (845)
Q Consensus 246 ---~~e~fl~~~VlP~l~~~s~---~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~A 319 (845)
.+++|+.++|+|.++ ++ +|++|+||||++|+|++.++++.+..+++.++++|.+++ +|||++||.|
T Consensus 448 ~~~~l~~~l~~~v~p~l~--~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~------~~V~~~A~~A 519 (960)
T 1wa5_C 448 NLLNVVDFFTKEIAPDLT--SNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE------YVVYTYAAIT 519 (960)
T ss_dssp TTCCHHHHHHHHTHHHHH--CSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC------HHHHHHHHHH
T ss_pred ccccHHHHHHHHhHHHhc--CCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC------hhHHHHHHHH
Confidence 468999999999998 45 999999999999999999877889999999999999876 9999999999
Q ss_pred hhhhhcc-------------CCCCCCchhhHHHHhhccCcc----c--cchhHHHHHHHHHHhccccccccchhHHHHHH
Q 003135 320 IVGLLEN-------------DYMPPEWYPLLQVIVGRIGYE----D--EENSILFELLSSVVGAANENVADHIPYIVSSL 380 (845)
Q Consensus 320 l~~~l~~-------------~~l~p~i~~llq~Ll~~l~~e----~--~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L 380 (845)
|.+|+++ +.+.|+++++|+.|+..+... . .+++.++.+|+++++.+++++.||+..+++.|
T Consensus 520 l~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L 599 (960)
T 1wa5_C 520 IEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQF 599 (960)
T ss_dssp HHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHH
T ss_pred HHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999873 258999999999999976653 1 36899999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhhhhhHhhhhhhccccccchhhhHHHHHHHHHHHHHhhhccccccccc
Q 003135 381 VAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEV 460 (845)
Q Consensus 381 ~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~d~~~d~~~~~~~~~~~~ail~ti~tll~~~~~~~~~~~~~s~ 460 (845)
...+.+.+.++.+ +.+.++ ++++|++++ ..
T Consensus 600 ~~~l~~~~~~~~~--~~~~~~-----------------------------------~~e~l~~l~------------~~- 629 (960)
T 1wa5_C 600 IEIVTIMAKNPSN--PRFTHY-----------------------------------TFESIGAIL------------NY- 629 (960)
T ss_dssp HHHHHHHTTSCCC--HHHHHH-----------------------------------HHHHHHHHH------------HT-
T ss_pred HHHHHHHHhCCCC--cHHHHH-----------------------------------HHHHHHHHH------------hc-
Confidence 9998877665444 244444 366666666 22
Q ss_pred CCCCCcccchhHHHHHHhhhccchhhHHHhhhhhHHHHHHHhh------------hhcccccccC--CCc-hHHHHHHHH
Q 003135 461 SAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI------------GDWHAWEETE--DLS-VFDCIKEIV 525 (845)
Q Consensus 461 ~~~p~~~~~le~~l~p~~~~i~~~~~~l~~~v~ef~~~~~~ll------------~~W~~~~~~~--~~~-~~dy~~el~ 525 (845)
..|+.+..+++.++|++..+ +++++.+|++++++++ .+|.+|+.+. +.+ ...|+..++
T Consensus 630 -~~~~~~~~~~~~~~p~~~~i------L~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 702 (960)
T 1wa5_C 630 -TQRQNLPLLVDSMMPTFLTV------FSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVT 702 (960)
T ss_dssp -SCGGGHHHHHHHHHHHHHHH------HHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHH
T ss_pred -CCcchHHHHHHHHHHHHHHH------HHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCCCchhHH
Confidence 34566777888899999999 9998899999999997 3577776554 210 013889999
Q ss_pred hccccccccccccccCCCCCCCCCCchhHhhhhhHHHHHHHhcCCcccccccch----hhhh-hc-CCCCCcccccccch
Q 003135 526 NLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPSATWRACSC----VHTL-LH-VPKYSFETEGVKQS 599 (845)
Q Consensus 526 ~~~~~~~L~nfi~~g~~~~~~~~~~~~~i~~i~~~~~s~~~~~y~~~~~~~~~~----~~~l-~~-v~~~~~~~~~~~~~ 599 (845)
+ +|++|+.+|++.+.+ ++.++++++.+++++..+ ..++.+ +..+ ++ +.+|
T Consensus 703 ~-----~L~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~-----~~a~~ll~~i~~~~~~~~~~~y---------- 758 (960)
T 1wa5_C 703 R-----LLKSFIKTDSSIFPD----LVPVLGIFQRLIASKAYE-----VHGFDLLEHIMLLIDMNRLRPY---------- 758 (960)
T ss_dssp H-----HHHHHHHHHGGGCSC----SHHHHHHHHHHHTCTTTH-----HHHHHHHHHHHHHSCHHHHGGG----------
T ss_pred H-----HHHHHHHhChHHHHH----HHHHHHHHHHHhCCCccc-----chHHHHHHHHHHHCCHHHHHHH----------
Confidence 8 999999999887765 677888877655433211 112222 2222 23 5555
Q ss_pred hhhhhhhhHhhhhHhhccCCCCch-hHHHHhhhccccchhhhHhhhhhcccCC-Cee----hhhhHHHhhhcCCCCCCcc
Q 003135 600 LTISFSCAAFSRFRAIQSKPSSLW-KPVVLAISSCYLCYPAVVEGILKKDEDG-GFA----LWGSALAFLCSSSLEPRLS 673 (845)
Q Consensus 600 ~~~~~~~~al~rl~~~~~~~~~~~-~~~i~vi~~~~~~~p~~~l~~L~~~~~~-~f~----~W~~~l~~~~~~~~~~~~~ 673 (845)
++.++..++++++. .++..++ ..++.+...|++|+|+.++++|++.|++ |+. .|+..+ .++.
T Consensus 759 -l~~i~~~l~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~---------~~~~ 826 (960)
T 1wa5_C 759 -IKQIAVLLLQRLQN--SKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTL---------PTIG 826 (960)
T ss_dssp -HHHHHHHHHHGGGS--SCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHG---------GGCC
T ss_pred -HHHHHHHHHHHHhh--CCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccch---------hhcc
Confidence 99999999999974 3455555 5677788888999999999999999974 444 899988 8999
Q ss_pred cchhHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhhhh
Q 003135 674 LESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKE 719 (845)
Q Consensus 674 r~~D~Kl~iLgL~sLl~~~~~l~~~~~~il~~~~~~L~~a~~~~~e 719 (845)
+.+|||++++||++|++..+.........+..++.++...+...++
T Consensus 827 ~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 872 (960)
T 1wa5_C 827 NLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSI 872 (960)
T ss_dssp SHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHSCST
T ss_pred CHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhCCcc
Confidence 9999999999999999865100012334566666666666554443
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.69 E-value=4.3e-17 Score=200.41 Aligned_cols=325 Identities=14% Similarity=0.141 Sum_probs=233.0
Q ss_pred eeeccCcceeehhhHHHhhhcccccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhhcCCCceeecchh
Q 003135 19 LRFKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHF 98 (845)
Q Consensus 19 ~~~K~kKwa~~il~rl~~Ry~~~~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~~~~~~~ll~p~l 98 (845)
+-..++++++..+.+++..|.+++.++++.+++.+++.+... .+.+...+++|+..+++.+..|+.++|++
T Consensus 227 ~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~---------~~~vr~~a~e~l~~l~~~~~~~~~~~~~~ 297 (852)
T 4fdd_A 227 EEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQ---------DENVALEACEFWLTLAEQPICKDVLVRHL 297 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCS---------SHHHHHHHHHHHHHHTTSTTHHHHHTTTH
T ss_pred CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCC---------cHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 345678999999999999999999999999999999887641 46788899999999998888888899999
Q ss_pred hhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchheeeeecCCCCCCCCCCCCccc
Q 003135 99 SVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVS 178 (845)
Q Consensus 99 ~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~L~~~~~~~~~~~~~~~~~~ 178 (845)
..++..+ ++.|+++++|.+.|+.||+|.- .+ |+ ..+.++.|.+|...|..| +
T Consensus 298 ~~l~p~l-l~~l~~~e~d~~~~~~d~~ed~---~~---dd----~~~~~~vr~~a~~~L~~l-----------------a 349 (852)
T 4fdd_A 298 PKLIPVL-VNGMKYSDIDIILLKGDVEGGS---GG---DD----TISDWNLRKCSAAALDVL-----------------A 349 (852)
T ss_dssp HHHHHHH-HHHTSCCHHHHHHHHC----------------------CCCCHHHHHHHHHHHH-----------------H
T ss_pred HHHHHHH-HHHcCCcHhHHHHhcCCccccc---cc---cc----ccccchHHHHHHHHHHHH-----------------H
Confidence 9998644 8999999999888888875521 11 00 013467899999999986 4
Q ss_pred hhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccc
Q 003135 179 SKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPL 258 (845)
Q Consensus 179 ~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~ 258 (845)
...++. ++. .+.+++.++... .+|+.+++|+.++|.++....+...+++..++ ..+++.
T Consensus 350 ~~~~~~----------~~~--~l~~~l~~~l~~--------~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l-~~l~~~ 408 (852)
T 4fdd_A 350 NVYRDE----------LLP--HILPLLKELLFH--------HEWVVKESGILVLGAIAEGCMQGMIPYLPELI-PHLIQC 408 (852)
T ss_dssp HHHGGG----------GHH--HHHHHHHHHHTC--------SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHH-HHHHHH
T ss_pred HhccHH----------HHH--HHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHHHH
Confidence 333322 222 122333322111 26999999999999998654332223444443 455666
Q ss_pred eeeeehhhhHhhhhhhHhhhhhcccc----cchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc--CCCCCC
Q 003135 259 YSVSVCLPYLVASANWILGELASCLP----EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPE 332 (845)
Q Consensus 259 l~~~s~~p~LrarA~~~l~~f~~~l~----~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~--~~l~p~ 332 (845)
++ ++++.+|..|||.+|+|+..++ ...+..+++.++++|.+++ ..||..|+.||..+++. +.+.|+
T Consensus 409 l~--d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~------~~vr~~a~~aL~~l~~~~~~~l~~~ 480 (852)
T 4fdd_A 409 LS--DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN------KRVQEAACSAFATLEEEACTELVPY 480 (852)
T ss_dssp TT--CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS------HHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred cC--CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHHhhHhhHhH
Confidence 76 6899999999999999998642 3457788999999998876 89999999999999974 468899
Q ss_pred chhhHHHHhhccCccc-cchhHHHHHHHHHHhccccccc--cchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHH
Q 003135 333 WYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVA--DHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALM 409 (845)
Q Consensus 333 i~~llq~Ll~~l~~e~-~e~d~l~~~L~~iV~~~~e~l~--p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~ 409 (845)
++++++.|+..+.... .....+..++..++...++.+. +|...++..|.+.+.. +.+... .. ..++++++.+
T Consensus 481 l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~-l~d~~~---~~-~~~~~~l~~i 555 (852)
T 4fdd_A 481 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM-LKDEDK---DL-FPLLECLSSV 555 (852)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHH-SCTTCT---TH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHh-cccccH---HH-HHHHHHHHHH
Confidence 9999999999775443 2344577888888877766654 3777777777776533 333322 22 3578888888
Q ss_pred HHhhh
Q 003135 410 AQSWE 414 (845)
Q Consensus 410 ~~~~~ 414 (845)
++..+
T Consensus 556 ~~~~g 560 (852)
T 4fdd_A 556 ATALQ 560 (852)
T ss_dssp HHHHG
T ss_pred HHHHh
Confidence 87653
No 3
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.66 E-value=5.4e-18 Score=211.29 Aligned_cols=301 Identities=13% Similarity=0.123 Sum_probs=206.1
Q ss_pred cceeehhhHHHhhhccc----cc-----------chhhHHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhh---
Q 003135 25 KRGLLIFSALVTRHRKF----SD-----------KLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLE--- 86 (845)
Q Consensus 25 Kwa~~il~rl~~Ry~~~----~~-----------~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~--- 86 (845)
+|..+.++|++.+|++. +. +.++.+++.+++.....++ ....+++...++.|++.+++
T Consensus 310 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~----~~~~~~v~~~~l~fw~~l~~~~~ 385 (971)
T 2x1g_F 310 EDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGI----YPVEESCSTMALAFWYMLQDEVF 385 (971)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSC----TTTTCTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCC----CCcchhhhHHHHHHHHHHHHHHH
Confidence 48999999999998842 21 2233334444433322111 11256778888888877654
Q ss_pred -------cCCCceeecchhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchhee
Q 003135 87 -------TGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGV 159 (845)
Q Consensus 87 -------~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~ 159 (845)
.+..|..++|++..|+..++.+..+.+++|.+.| ||+| | +|+.++|+++.++|..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~--d~~e--~--------------~~f~~~R~~~~~~l~~ 447 (971)
T 2x1g_F 386 AMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKW--SSDD--L--------------ECFRCYRQDISDTFMY 447 (971)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCS--CHHH--H--------------HHHHHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc--CHhH--H--------------HHHHHHHHHHHHHHHH
Confidence 1345667799999999888766644444443444 5554 1 3467899999999998
Q ss_pred eeecCCCCCCCCCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHH
Q 003135 160 ISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFL 239 (845)
Q Consensus 160 L~~~~~~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l 239 (845)
+ +..+++.+ ++ .+++ ++.+.++.|... ..+|+.+||+++++|++++.+
T Consensus 448 ~-----------------~~~~~~~~-----l~-~~~~--~l~~~l~~~~~~-------~~~w~~~eaal~~l~~iae~~ 495 (971)
T 2x1g_F 448 C-----------------YDVLNDYI-----LE-ILAA--MLDEAIADLQRH-------PTHWTKLEACIYSFQSVAEHF 495 (971)
T ss_dssp H-----------------HTTCTTHH-----HH-HHHH--HHHHHHHHHHHC-------TTCCHHHHHHHHHHHHTTTC-
T ss_pred H-----------------HHHHhHHH-----HH-HHHH--HHHHHHHhccCC-------CCcHHHHHHHHHHHHHHHhhc
Confidence 5 54444331 21 1233 355555554321 147999999999999999876
Q ss_pred hhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhccc--ccchhhHHHHHHHHHHhhcCCCCCcccceeeccc
Q 003135 240 REQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL--PEDISADVYSSLLKALQMLDKGDTSCYPVRASAA 317 (845)
Q Consensus 240 ~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l--~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA 317 (845)
.+...+.+..++. ++|.+....++|.+|.+|||++|+|++.+ +++.+..+++.++++| + .+|+..||
T Consensus 496 ~~~~~~~l~~l~~--~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--------~~v~~~A~ 564 (971)
T 2x1g_F 496 GGEEKRQIPRLMR--VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--------SSMSAQAT 564 (971)
T ss_dssp -----CHHHHHHH--HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--------SSCHHHHH
T ss_pred ChhhhHHHHHHHH--HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--------hHHHHHHH
Confidence 6533456667666 77888721248999999999999999975 3567999999999999 3 36999999
Q ss_pred hhhhhhhccC--CCCCCchhhHHHHhhccCccc---cchhHHHHHHHHHHhccc-cccccchhHHHHHHHHHHHhhcCC
Q 003135 318 GAIVGLLEND--YMPPEWYPLLQVIVGRIGYED---EENSILFELLSSVVGAAN-ENVADHIPYIVSSLVAAISKHMHP 390 (845)
Q Consensus 318 ~Al~~~l~~~--~l~p~i~~llq~Ll~~l~~e~---~e~d~l~~~L~~iV~~~~-e~l~p~a~~l~~~L~~~f~k~~~~ 390 (845)
.|+.+|++.. .+.|+++++++.|+..+.+.. .+...+++++..++.... ++..|+...+++.+.+.+.+++..
T Consensus 565 ~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 565 LGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999753 688999999999999776532 357778999999888664 778888889988888887666543
No 4
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.61 E-value=4.7e-17 Score=204.77 Aligned_cols=264 Identities=11% Similarity=0.086 Sum_probs=194.4
Q ss_pred HHHHHHhhhHHHHhhhh----cCCCceeecchhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhh
Q 003135 70 QERIISLAFDVISHVLE----TGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWRED 145 (845)
Q Consensus 70 sd~~v~~~l~fL~~~v~----~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d 145 (845)
.+.+...+++|...+++ .+..|+.++|++..|+. ++++.|++.+ |.+.+++||.||+|+..+. +|
T Consensus 357 d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~-~ll~~m~~~e-d~~~~~dd~~e~~r~~~~d---------~d 425 (1049)
T 3m1i_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRL-VIIENMVRPE-EVLVVENDEGEIVREFVKE---------SD 425 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHH-HHHHTCCCCT-TCCEEECTTSCEEECSSCC---------HH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH-HHHHhcCCCc-ceeeeeCCCCcchHhhhcc---------ch
Confidence 45778889999999988 67888999999999995 5689998854 5444466888999987762 45
Q ss_pred hhhhhhhhcchheeeeecCCCCCCCCCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhh
Q 003135 146 LFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDY 225 (845)
Q Consensus 146 ~~s~R~AA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~k 225 (845)
..+.|+++.++|..| +..++.. ++. ++.+.++++...+ ..+|+.+
T Consensus 426 ~~~~~~~~~~~L~~l-----------------~~~~~~~----------~l~--~v~~~l~~~l~~~------~~~W~~~ 470 (1049)
T 3m1i_C 426 TIQLYKSEREVLVYL-----------------THLNVID----------TEE--IMISKLARQIDGS------EWSWHNI 470 (1049)
T ss_dssp HHHHHHHHHHHHHHH-----------------HHHCHHH----------HHH--HHHHHHHHHHTSS------SCCHHHH
T ss_pred HHHHHHHHHHHHHHH-----------------HccCHHH----------HHH--HHHHHHHHHhCCC------CCCHHHH
Confidence 668899999999985 5444422 333 3445555443221 2379999
Q ss_pred HHHHHHhhchHHHHhhh-c---hhhHHHHHhhccccceeee-ehhhhHhhhhhhHhhhhhccc--ccchhhHHHHHHHHH
Q 003135 226 FGVLMAYGGLQEFLREQ-K---SEFTANLVRSRVLPLYSVS-VCLPYLVASANWILGELASCL--PEDISADVYSSLLKA 298 (845)
Q Consensus 226 dgaL~~ig~la~~l~~~-~---~~~~e~fl~~~VlP~l~~~-s~~p~LrarA~~~l~~f~~~l--~~~~l~~i~~~ll~~ 298 (845)
||+++++|+++..+.+. . .+.+.++|.+ +|++... .++|.+|.++||++|+|+..+ +++.+..+++.++.+
T Consensus 471 eaal~algsia~~~~~~~e~~~l~~v~~~l~~--l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~ 548 (1049)
T 3m1i_C 471 NTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD--LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEF 548 (1049)
T ss_dssp HHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH--HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCchhhHHHHHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999998654321 1 1223445444 4666421 368888889999999999874 466799999999999
Q ss_pred HhhcCCCCCcccceeeccchhhhhhhccC----------CCCCCchhhHHHHhhccCccc-cchhHHHHHHHHHHhccc-
Q 003135 299 LQMLDKGDTSCYPVRASAAGAIVGLLEND----------YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAAN- 366 (845)
Q Consensus 299 L~~~~~~~~~~lpVrv~AA~Al~~~l~~~----------~l~p~i~~llq~Ll~~l~~e~-~e~d~l~~~L~~iV~~~~- 366 (845)
|.+++ .+||..||.|+.+|++.. .+.|++.++++.+...+.... .+...+++++..++...+
T Consensus 549 l~~~~------~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~ 622 (1049)
T 3m1i_C 549 MHETH------EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1049)
T ss_dssp TTSSC------HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCS
T ss_pred hcCCC------HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCC
Confidence 98876 899999999999999742 235999999999988665433 357778899999988776
Q ss_pred -cccccchhHHHHHHHHHHHhh
Q 003135 367 -ENVADHIPYIVSSLVAAISKH 387 (845)
Q Consensus 367 -e~l~p~a~~l~~~L~~~f~k~ 387 (845)
+...|+...+++.+.+.+.++
T Consensus 623 ~~~~~~~~~~l~~~~~~~~~~~ 644 (1049)
T 3m1i_C 623 VAERNRLLSDLMQLPNMAWDTI 644 (1049)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 346677778777777766544
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.61 E-value=7.1e-17 Score=200.74 Aligned_cols=323 Identities=13% Similarity=0.129 Sum_probs=220.9
Q ss_pred CcceeehhhHHHhhhccc-ccch-----hhHHHHHHHHHHhhcccccchhh-HHHHHHHhhhHHHHhhhhc---------
Q 003135 24 GKRGLLIFSALVTRHRKF-SDKL-----MPDIMNSVLQIVKYSANISKLDF-LQERIISLAFDVISHVLET--------- 87 (845)
Q Consensus 24 kKwa~~il~rl~~Ry~~~-~~~~-----~p~~l~~~l~ll~~~~~~~~~~~-lsd~~v~~~l~fL~~~v~~--------- 87 (845)
.+|.++.+++++.+|++. ...+ .+..+..+|+.+-..+ ...+.| ..+.+...+++|...+++.
T Consensus 301 d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~-~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~ 379 (963)
T 2x19_B 301 DMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCT-GIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQ 379 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-TCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHH-cCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence 358888899999988752 1111 1233345555443211 001112 2456788899998888772
Q ss_pred CCCceeecchhhhhhhhhccchhcccccccc--hhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchheeeeecCC
Q 003135 88 GPGWRLVSPHFSVLLDKAIFPALVLNEKDIS--EWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVSKG 165 (845)
Q Consensus 88 ~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~E--lwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~L~~~~~ 165 (845)
+..++.++|++..|+. ++++.|+.. +|.+ .|++|+ .+++.+.|+++.++|..+
T Consensus 380 ~~~~~~~~~~l~~l~~-~ll~~~~~p-~~~~~~~~~~de------------------~~~~~~~r~~~~~~L~~~----- 434 (963)
T 2x19_B 380 AVYQQVYRPVYFQLVD-VLLHKAQFP-SDEEYGFWSSDE------------------KEQFRIYRVDISDTLMYV----- 434 (963)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHSCC-CHHHHHTSCHHH------------------HHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHcCC-CcccccCCChhH------------------HHHHHHHHHHHHHHHHHH-----
Confidence 3566788999999995 556777643 3333 333321 244567899999999885
Q ss_pred CCCCCCCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhhchh
Q 003135 166 PPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSE 245 (845)
Q Consensus 166 ~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~~~~ 245 (845)
+...++. .++ .+++ ++.+.+++|.. ..+|+.+||+++++|+++..+.+...+
T Consensus 435 ------------~~~~~~~-----~l~-~~~~--~l~~~l~~~~~--------~~~w~~~eaal~al~~i~~~~~~~~~~ 486 (963)
T 2x19_B 435 ------------YEMLGAE-----LLS-NLYD--KLGRLLTSSEE--------PYSWQHTEALLYGFQSIAETIDVNYSD 486 (963)
T ss_dssp ------------HHHHTHH-----HHH-HHHH--HHHHHHHTCCC--------SCCHHHHHHHHHHHHHHTTSCCSSCCS
T ss_pred ------------HHHccHH-----HHH-HHHH--HHHHHHHhcCC--------CCchHHHHHHHHHHHHHHhhcCchhhH
Confidence 5444432 121 1233 35555666522 137999999999999999776543345
Q ss_pred hHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhccc--ccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhh
Q 003135 246 FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL--PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 323 (845)
Q Consensus 246 ~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l--~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~ 323 (845)
++..++. +++.+. .++|.+|.+|||++|+|+..+ +++.+..+++.++++|.+ .+|+..||.|+.++
T Consensus 487 ~l~~l~~--~l~~l~--~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--------~~V~~~A~~al~~l 554 (963)
T 2x19_B 487 VVPGLIG--LIPRIS--ISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--------PELSVSSVSTLKKI 554 (963)
T ss_dssp HHHHHHH--HGGGSC--CCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--------GGGHHHHHHHHHHH
T ss_pred HHHHHHH--HHHhCC--CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--------chHHHHHHHHHHHH
Confidence 5555554 566666 468999999999999999975 356788999999999953 57999999999999
Q ss_pred hcc--CCCCCCchhhHHHHhhccCccc---cchhHHHHHHHHHHhccc-cccccchhHHHHHHHHHHHhhcCCCCCChHH
Q 003135 324 LEN--DYMPPEWYPLLQVIVGRIGYED---EENSILFELLSSVVGAAN-ENVADHIPYIVSSLVAAISKHMHPSSEPWPQ 397 (845)
Q Consensus 324 l~~--~~l~p~i~~llq~Ll~~l~~e~---~e~d~l~~~L~~iV~~~~-e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~ 397 (845)
++. ..+.|++.++++.|+..+.+.. .....+++++..++...+ ++..||...+++.+.+.+.+++..+.+ +.
T Consensus 555 ~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~ 632 (963)
T 2x19_B 555 CRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPN--PS 632 (963)
T ss_dssp HHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSC--HH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC--HH
Confidence 974 3789999999999998665422 357778999999998775 788899999999999988777655433 23
Q ss_pred HHH---HHHHHHHHHHHhhh
Q 003135 398 VVE---RGFAALALMAQSWE 414 (845)
Q Consensus 398 ~~~---~~f~~l~~~~~~~~ 414 (845)
..+ +.+++|+.+.+...
T Consensus 633 ~~~~~~~~l~~l~~i~~~~~ 652 (963)
T 2x19_B 633 NKLAIVHILGLLSNLFTTLD 652 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 333 45666766666654
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.22 E-value=7.9e-12 Score=152.38 Aligned_cols=290 Identities=16% Similarity=0.208 Sum_probs=197.7
Q ss_pred eeeeccCcceeehhhHHHhhhcccccchhh-HHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhhcCC-------
Q 003135 18 LLRFKTGKRGLLIFSALVTRHRKFSDKLMP-DIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGP------- 89 (845)
Q Consensus 18 ~~~~K~kKwa~~il~rl~~Ry~~~~~~~~p-~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~~~~------- 89 (845)
.+.|+.+++++.++.++..+|++.+.++++ .+++.++..+... .+.+...+++|+..+++...
T Consensus 235 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~---------~~~vr~~a~~~l~~l~~~~~~~~~~~~ 305 (861)
T 2bpt_A 235 AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP---------NDKVASMTVEFWSTICEEEIDIAYELA 305 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS---------SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 346889999999999999999988888887 7777766665431 36788889999998887531
Q ss_pred ---Cceeecch-hhhhhhhhccchh--cccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchheeeeec
Q 003135 90 ---GWRLVSPH-FSVLLDKAIFPAL--VLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGVISVS 163 (845)
Q Consensus 90 ---~~~ll~p~-l~~Ll~~vIfP~l--~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~L~~~ 163 (845)
.|....++ +...+ ..|+|.+ ++++.|++.| +|.+++|.+|.+.|..|
T Consensus 306 ~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~-----------------------d~~~~~r~~a~~~L~~l--- 358 (861)
T 2bpt_A 306 QFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPE-----------------------DDDWNVSMSAGACLQLF--- 358 (861)
T ss_dssp HCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-C-----------------------CCCCHHHHHHHHHHHHH---
T ss_pred hccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccc-----------------------cccCcHHHHHHHHHHHH---
Confidence 11111221 22222 2234555 4555443211 22357899999999986
Q ss_pred CCCCCCCCCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHh-hh
Q 003135 164 KGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLR-EQ 242 (845)
Q Consensus 164 ~~~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~-~~ 242 (845)
+...++. ++. .+.+++.+.... .+|+.+++++.++|.++.... +.
T Consensus 359 --------------~~~~~~~----------~~~--~l~~~l~~~l~~--------~~~~~r~~a~~~l~~i~~~~~~~~ 404 (861)
T 2bpt_A 359 --------------AQNCGNH----------ILE--PVLEFVEQNITA--------DNWRNREAAVMAFGSIMDGPDKVQ 404 (861)
T ss_dssp --------------HHHHGGG----------GHH--HHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred --------------HHHccHh----------HHH--HHHHHHHHHcCC--------CChhHHHHHHHHHHHHHcCCCHHH
Confidence 4444422 222 122233322111 269999999999999884321 11
Q ss_pred chhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhccc-----ccchhhHHHHHHHHHHhhcCCCCCcccceeeccc
Q 003135 243 KSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-----PEDISADVYSSLLKALQMLDKGDTSCYPVRASAA 317 (845)
Q Consensus 243 ~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-----~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA 317 (845)
..+++..+ ...+++.+. .++|.+|..|+|.+|+++..+ +...+..+++.++++|.++ ..||..|+
T Consensus 405 ~~~~l~~i-l~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-------~~v~~~a~ 474 (861)
T 2bpt_A 405 RTYYVHQA-LPSILNLMN--DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-------PKVATNCS 474 (861)
T ss_dssp HHHHHHHH-HHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-------HHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHcC--CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-------hHHHHHHH
Confidence 12233332 234445555 678999999999999999864 2456889999999999653 68999999
Q ss_pred hhhhhhhcc------CCCCCCchhhHHHHhhccCcccc-c--hhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhh
Q 003135 318 GAIVGLLEN------DYMPPEWYPLLQVIVGRIGYEDE-E--NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKH 387 (845)
Q Consensus 318 ~Al~~~l~~------~~l~p~i~~llq~Ll~~l~~e~~-e--~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~ 387 (845)
.||..++.. ..+.|++++++..|++.+...+. + -.....++..++...++++.||...++..+.+.+.+.
T Consensus 475 ~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 553 (861)
T 2bpt_A 475 WTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQT 553 (861)
T ss_dssp HHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHH
Confidence 999999873 46789999999999997764331 1 2357889999999999999999888888888776554
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.15 E-value=1.2e-11 Score=150.97 Aligned_cols=312 Identities=13% Similarity=0.162 Sum_probs=209.8
Q ss_pred eeccCcceeehhhHHHhhhcccccchhh-HHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhhc-----------
Q 003135 20 RFKTGKRGLLIFSALVTRHRKFSDKLMP-DIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLET----------- 87 (845)
Q Consensus 20 ~~K~kKwa~~il~rl~~Ry~~~~~~~~p-~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~~----------- 87 (845)
.++.++.++.++.+++.+|.+.+.++++ .+++.+++.+... .+.+...+++|+..+++.
T Consensus 230 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~v~~~al~~l~~l~~~~~~~~~~~~~~ 300 (876)
T 1qgr_A 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD---------IDEVALQGIEFWSNVCDEEMDLAIEASEA 300 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS---------SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC---------chHHHHHHHHHHHHHHHHHHhHhhhhccc
Confidence 3577889999999999999998888888 8888888766431 356677788888877754
Q ss_pred --------CCCceeecchhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchhee
Q 003135 88 --------GPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLGV 159 (845)
Q Consensus 88 --------~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~~ 159 (845)
+..+..+++++..++.. ++..|+-.++| + + ++..+.|.+|...|..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~ll~~-ll~~l~~~~~d-------~--------~----------~~~~~~r~~a~~~l~~ 354 (876)
T 1qgr_A 301 AEQGRPPEHTSKFYAKGALQYLVPI-LTQTLTKQDEN-------D--------D----------DDDWNPCKAAGVCLML 354 (876)
T ss_dssp HHHSSCCSSCCCCHHHHHHHHHHHH-HHHHTTCCCSS-------C--------C----------TTCCCHHHHHHHHHHH
T ss_pred cccCCCccchhHHHHHHHHHHHhHH-HHHHhhccccc-------c--------c----------ccccHHHHHHHHHHHH
Confidence 24455666777766643 34555422221 0 1 1234799999999998
Q ss_pred eeecCCCCCCCCCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHH
Q 003135 160 ISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFL 239 (845)
Q Consensus 160 L~~~~~~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l 239 (845)
| +...++. ++. .+.+.+.+.... .+|+.+++++.++|.++...
T Consensus 355 l-----------------~~~~~~~----------~~~--~~l~~l~~~l~~--------~~~~~r~~a~~~l~~i~~~~ 397 (876)
T 1qgr_A 355 L-----------------ATCCEDD----------IVP--HVLPFIKEHIKN--------PDWRYRDAAVMAFGCILEGP 397 (876)
T ss_dssp H-----------------HHHHGGG----------GHH--HHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSSSS
T ss_pred H-----------------HHHCcHh----------hHH--HHHHHHHHHccC--------CChHHHHHHHHHHHHHHcCC
Confidence 6 5444422 222 122233222111 26999999999999987533
Q ss_pred h-hhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccc-----cchhhHHHHHHHHHHhhcCCCCCccccee
Q 003135 240 R-EQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP-----EDISADVYSSLLKALQMLDKGDTSCYPVR 313 (845)
Q Consensus 240 ~-~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~-----~~~l~~i~~~ll~~L~~~~~~~~~~lpVr 313 (845)
. +...+++.. +...+++.++ .+++.+|.+|||.+++|+..++ ...+..+++.++++|.++ ..||
T Consensus 398 ~~~~~~~~~~~-~l~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-------~~v~ 467 (876)
T 1qgr_A 398 EPSQLKPLVIQ-AMPTLIELMK--DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-------PRVA 467 (876)
T ss_dssp CHHHHHHHHHH-HHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-------HHHH
T ss_pred CHHHHHHHHHH-HHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-------HHHH
Confidence 2 101122222 2234445555 6889999999999999998753 356889999999999763 5789
Q ss_pred eccchhhhhhhcc----------------CCCCCCchhhHHHHhhccCccccc----hhHHHHHHHHHHhccccccccch
Q 003135 314 ASAAGAIVGLLEN----------------DYMPPEWYPLLQVIVGRIGYEDEE----NSILFELLSSVVGAANENVADHI 373 (845)
Q Consensus 314 v~AA~Al~~~l~~----------------~~l~p~i~~llq~Ll~~l~~e~~e----~d~l~~~L~~iV~~~~e~l~p~a 373 (845)
..|+.||..++.. +.+.|++.+++..|+..+.....+ ...++.++..++...+.+..|+.
T Consensus 468 ~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~ 547 (876)
T 1qgr_A 468 SNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAV 547 (876)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHH
Confidence 9999999999864 248899999999999976543211 13478899999999998888888
Q ss_pred hHHHHHHHHHHHhhcC------CCCC--ChHHHHHHHHHHHHHHHHhh
Q 003135 374 PYIVSSLVAAISKHMH------PSSE--PWPQVVERGFAALALMAQSW 413 (845)
Q Consensus 374 ~~l~~~L~~~f~k~~~------~~~~--~~~~~~~~~f~~l~~~~~~~ 413 (845)
..++..+...+...+. ...+ .|+.+-..++.+|+.+.+..
T Consensus 548 ~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~ 595 (876)
T 1qgr_A 548 QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKV 595 (876)
T ss_dssp HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888887765421 1111 12334455666676666543
No 8
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.74 E-value=9.9e-09 Score=127.97 Aligned_cols=288 Identities=13% Similarity=0.078 Sum_probs=180.4
Q ss_pred HHHHHHhhhHHHHhhhhc----C--C-CceeecchhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhch
Q 003135 70 QERIISLAFDVISHVLET----G--P-GWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGW 142 (845)
Q Consensus 70 sd~~v~~~l~fL~~~v~~----~--~-~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~ 142 (845)
++.+...++.|++..++. + . .+..++|++..|+..+ +-.|.+.+++ .|.+|. +.|.
T Consensus 345 ~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~l-i~k~~yp~d~--~~~~~~------d~ed-------- 407 (980)
T 3ibv_A 345 YDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAI-IKKMKYDESQ--EWDDDP------DSEE-------- 407 (980)
T ss_dssp SHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHH-HHTTSCCTTC--CCCCCS------SSST--------
T ss_pred chhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHH-HHHccCCCcc--cccccc------chhH--------
Confidence 457777888888877743 1 2 2346689999999654 6778887664 365311 0111
Q ss_pred hhhhhhhhhhhcchheeeeecCCCCCCCCCCCCccchhhcccccccccccccccCCe--eeeccccccCCCCCCchhhhh
Q 003135 143 REDLFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGEL--LVLPFLSRFPIPCDANASHSR 220 (845)
Q Consensus 143 ~~d~~s~R~AA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i--~v~~~L~~y~~~~~~~~~~~~ 220 (845)
.+++..-|.....++..+ ..-++.. ++..+ .+.+.+++...+. ...
T Consensus 408 ~~~F~e~Rk~l~~l~d~~-----------------~~l~~~~----------~l~~~~~~i~~~l~~~l~~~-----~~~ 455 (980)
T 3ibv_A 408 EAEFQEMRKKLKIFQDTI-----------------NSIDSSL----------FSSYMYSAITSSLSTAATLS-----PEN 455 (980)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------------HHHCHHH----------HHHHHHHHHHHHHHHHTTSC-----HHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------------HhcChHH----------HHHHHHHHHHHHHHHHhccc-----CCC
Confidence 233444555555555542 1111111 12100 1233333322111 235
Q ss_pred hhhhhHHHHHHhhchHHHHhhh---------chhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhccc--ccchhh
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQ---------KSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL--PEDISA 289 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~---------~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l--~~~~l~ 289 (845)
+|+..|++|+++|++++.+... ..+.+.+++.+.+-..+.. .+||.+|..+||++|+|++.+ .++.+.
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~-~~hp~V~~~~~~~l~rys~~~~~~~~~l~ 534 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCR-HPHPLVQLLYMEILVRYASFFDYESAAIP 534 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTT-CCCHHHHHHHHHHHHHTGGGGGTCCTTHH
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 7999999999999999875431 1122334443332211221 579999999999999999985 467788
Q ss_pred HHHHHHHH--HHhhcCCCCCcccceeeccchhhhhhhcc--CCCCCCchhhHHHHhhccCcc---c--cc----------
Q 003135 290 DVYSSLLK--ALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYE---D--EE---------- 350 (845)
Q Consensus 290 ~i~~~ll~--~L~~~~~~~~~~lpVrv~AA~Al~~~l~~--~~l~p~i~~llq~Ll~~l~~e---~--~e---------- 350 (845)
.+++.++. ++.+++ ..||..||.|+.+|++. ..+.|++.++++.+-.++... . .|
T Consensus 535 ~~L~~ll~~~gl~~~~------~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~ 608 (980)
T 3ibv_A 535 ALIEYFVGPRGIHNTN------ERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSI 608 (980)
T ss_dssp HHHHHHTSTTTTTCCC------TTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHH
T ss_pred HHHHHHhccccccCCC------hhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhc
Confidence 88888888 777776 78999999999999985 478999999999887755421 1 01
Q ss_pred -------hhHHHHHHHHHHhccc---cccccchhHHHHHHHHHHHhhcCCCCCC--hHHHHHHHHHHHHHHHHhh
Q 003135 351 -------NSILFELLSSVVGAAN---ENVADHIPYIVSSLVAAISKHMHPSSEP--WPQVVERGFAALALMAQSW 413 (845)
Q Consensus 351 -------~d~l~~~L~~iV~~~~---e~l~p~a~~l~~~L~~~f~k~~~~~~~~--~~~~~~~~f~~l~~~~~~~ 413 (845)
--+|++++..++...+ ++..-+...|++-|.+.+.+.+...... -..-.|++.-+++.+++..
T Consensus 609 ~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf 683 (980)
T 3ibv_A 609 RNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGF 683 (980)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTS
T ss_pred ccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccC
Confidence 2348999999997754 2444477778888888777776544321 0013566777788877754
No 9
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.64 E-value=1.8e-09 Score=121.33 Aligned_cols=207 Identities=15% Similarity=0.175 Sum_probs=136.2
Q ss_pred eeeccCcceeehhhHHHhhhcccccchhh-HHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhhcC---------
Q 003135 19 LRFKTGKRGLLIFSALVTRHRKFSDKLMP-DIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETG--------- 88 (845)
Q Consensus 19 ~~~K~kKwa~~il~rl~~Ry~~~~~~~~p-~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~~~--------- 88 (845)
+-.+.+++++.++..+..+|.+++.++++ .+++.++..+... .+.+...+++|+..+++..
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~v~~~a~~~l~~~~~~~~~~~~~~~~ 299 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD---------IDEVALQGIEFWSNVCDEEMDLAIEASE 299 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS---------SHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------chHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34578899999999999999999999999 8988877766531 4677788999999888752
Q ss_pred ----------CCceeecchhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhhhhhhhhcchhe
Q 003135 89 ----------PGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLFTARKSAINLLG 158 (845)
Q Consensus 89 ----------~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~s~R~AA~~lL~ 158 (845)
..++.+++++..++.. ++. ++++.|++.+ +|..++|.+|.++|.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~l~p~-l~~--~l~~~d~d~~-----------------------~~~~~~r~~a~~~L~ 353 (462)
T 1ibr_B 300 AAEQGRPPEHTSKFYAKGALQYLVPI-LTQ--TLTKQDENDD-----------------------DDDWNPCKAAGVCLM 353 (462)
T ss_dssp TTCSSSCSSCCCCCHHHHHHHHHHHH-HHH--HTTCCCSSCC-----------------------TTCCSHHHHHHHHHH
T ss_pred ccccCCCccchhHHHHHHHhhhccHH-HHH--HHHhcccccc-----------------------cccchHHHHHHHHHH
Confidence 4455556666555432 233 3444443211 223579999999999
Q ss_pred eeeecCCCCCCCCCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHH
Q 003135 159 VISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEF 238 (845)
Q Consensus 159 ~L~~~~~~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~ 238 (845)
.| +...++. ++. .+.+.+.++... .+|+.+++|++++|.++..
T Consensus 354 ~l-----------------~~~~~~~----------~~~--~~~~~l~~~l~~--------~~~~~r~aal~~l~~l~~~ 396 (462)
T 1ibr_B 354 LL-----------------ATCCEDD----------IVP--HVLPFIKEHIKN--------PDWRYRDAAVMAFGCILEG 396 (462)
T ss_dssp HH-----------------HHHTTTT----------HHH--HHHHHHHHHTTC--------SSHHHHHHHHHHHHHTSSS
T ss_pred HH-----------------HHhccHH----------HHH--HHHHHHHHHhcC--------CChHHHHHHHHHHHHHhcC
Confidence 96 5544432 222 122333332221 2699999999999999853
Q ss_pred Hh-hhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhccccc-----chhhHHHHHHHHHHh
Q 003135 239 LR-EQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE-----DISADVYSSLLKALQ 300 (845)
Q Consensus 239 l~-~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~-----~~l~~i~~~ll~~L~ 300 (845)
.. +.-.+++.. +...+++.++ +++|.+|.+|||.+++|+..+.+ ..+..+++.++++|+
T Consensus 397 ~~~~~~~~~l~~-~~~~l~~~l~--d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 397 PEPSQLKPLVIQ-AMPTLIELMK--DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp SCTTTTCTTTTT-HHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred CcHHHHHHHHHH-HHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 22 101122222 2345566666 68899999999999999987533 457777777776664
No 10
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.13 E-value=1e-06 Score=110.22 Aligned_cols=264 Identities=11% Similarity=0.104 Sum_probs=159.2
Q ss_pred HHHHhhhHHHHhhhh----cCCCceeecchhhhhhhhhccchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhhhh
Q 003135 72 RIISLAFDVISHVLE----TGPGWRLVSPHFSVLLDKAIFPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWREDLF 147 (845)
Q Consensus 72 ~~v~~~l~fL~~~v~----~~~~~~ll~p~l~~Ll~~vIfP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d~~ 147 (845)
.+...+++|=....+ .+..+..++|++..|+..+ +-.|.+.+++. .+++|-.|++|..... -|+ .+.+.
T Consensus 359 ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vl-i~km~~P~e~~-ive~d~~~~~~e~~~d-~d~----~~~f~ 431 (1023)
T 4hat_C 359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVI-IENMVRPEEVL-VVENDEGEIVREFVKE-SDT----IQLYK 431 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHH-HHSCCCCTTCC-EEECTTSCEEECSSCC-GGG----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH-HHhcCCCcccc-cCCCCCccHHHHhccc-hHH----HHHHH
Confidence 455666776444433 2224457789988888655 66777776543 3555544444432211 012 23444
Q ss_pred hhhhhhcchheeeeecCCCCCCCCCCCCccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHH
Q 003135 148 TARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFG 227 (845)
Q Consensus 148 s~R~AA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdg 227 (845)
+-| +.|..+ +.--+.. ++. .+.+.|.+....+ ..+|+..||
T Consensus 432 ~~R----d~L~~l-----------------~~l~~~~----------~~~--~~~~~l~~~l~~~------~~~W~~~EA 472 (1023)
T 4hat_C 432 SER----EVLVYL-----------------THLNVID----------TEE--IMISKLARQIDGS------EWSWHNINT 472 (1023)
T ss_dssp HHH----HHHHHH-----------------HHHCHHH----------HHH--HHHHHHHHHHSST------TCCHHHHHH
T ss_pred HHH----HHHHHH-----------------hccCHHH----------HHH--HHHHHHHHHhcCC------CCCHHHHHH
Confidence 566 555543 2111101 222 2223333211111 136999999
Q ss_pred HHHHhhchHHHHhhh-chhhHHHHHhhcccccee--ee-ehhhhHhhhhhhHhhhhhccc--ccchhhHHHHHHHHHHhh
Q 003135 228 VLMAYGGLQEFLREQ-KSEFTANLVRSRVLPLYS--VS-VCLPYLVASANWILGELASCL--PEDISADVYSSLLKALQM 301 (845)
Q Consensus 228 aL~~ig~la~~l~~~-~~~~~e~fl~~~VlP~l~--~~-s~~p~LrarA~~~l~~f~~~l--~~~~l~~i~~~ll~~L~~ 301 (845)
+++++|++++..... .++++.+.+. .++.... .. .+.+.+|..+||++|+|+..+ +++.+..+++.++..|.+
T Consensus 473 ~~~a~gaIa~~~~~~~e~~~l~~vi~-~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~ 551 (1023)
T 4hat_C 473 LSWAIGSISGTMSEDTEKRFVVTVIK-DLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHE 551 (1023)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHH-HHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHH-HHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhc
Confidence 999999998654331 2233322222 1111111 00 245567778999999999974 677899999999999977
Q ss_pred cCCCCCcccceeeccchhhhhhhccC----------CCCCCchhhHHHHhhccCccc-cchhHHHHHHHHHHhcccccc-
Q 003135 302 LDKGDTSCYPVRASAAGAIVGLLEND----------YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENV- 369 (845)
Q Consensus 302 ~~~~~~~~lpVrv~AA~Al~~~l~~~----------~l~p~i~~llq~Ll~~l~~e~-~e~d~l~~~L~~iV~~~~e~l- 369 (845)
++ ..|...||.|+..+++.. ...|++.++++.+...+..-. .....+.+++..+|.......
T Consensus 552 ~~------~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~ 625 (1023)
T 4hat_C 552 TH------EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAE 625 (1023)
T ss_dssp SC------HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHH
T ss_pred CC------HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhh
Confidence 65 559999999999998742 347899999988888554322 345678889999998876442
Q ss_pred cc-chhHHHHHHHHHHHhhc
Q 003135 370 AD-HIPYIVSSLVAAISKHM 388 (845)
Q Consensus 370 ~p-~a~~l~~~L~~~f~k~~ 388 (845)
.+ +...|++.+.+.+.+++
T Consensus 626 ~~~~l~~L~~~~~~~~~~l~ 645 (1023)
T 4hat_C 626 RNRLLSDLMQLPNMAWDTIV 645 (1023)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33 66667777777766655
No 11
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.95 E-value=4.8e-05 Score=93.19 Aligned_cols=175 Identities=15% Similarity=0.080 Sum_probs=129.1
Q ss_pred hhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccc---cchhhHHHHHHH
Q 003135 220 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP---EDISADVYSSLL 296 (845)
Q Consensus 220 ~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~---~~~l~~i~~~ll 296 (845)
..|..+.++..+++.++..+.+. .+ +-+...+...++ ++.+..|..|++.+|.++...+ ...+..+++.++
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~--~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~ 406 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLF--HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI 406 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHT--CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 46888999999999999776431 11 222223333345 5789999999999999988632 235788999999
Q ss_pred HHHhhcCCCCCcccceeeccchhhhhhhcc---CCCCCCchhhHHHHhhccCccc-cchhHHHHHHHHHHhccccccccc
Q 003135 297 KALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADH 372 (845)
Q Consensus 297 ~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~---~~l~p~i~~llq~Ll~~l~~e~-~e~d~l~~~L~~iV~~~~e~l~p~ 372 (845)
++|.|++ ..||..|+.||.++... ....+++.+++..|++.+.+.. .--.....++..+++..+..+.||
T Consensus 407 ~~l~d~~------~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~ 480 (852)
T 4fdd_A 407 QCLSDKK------ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY 480 (852)
T ss_dssp HHTTCSS------HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred HHcCCCC------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH
Confidence 9998887 89999999999998863 3577889999999998775433 124456778888999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhh
Q 003135 373 IPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (845)
Q Consensus 373 a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~ 413 (845)
.+.|++.|...+.+. . .....-.+++++.++.+.
T Consensus 481 l~~ll~~L~~~l~~~-----~--~~~~~~~~~ai~~l~~~~ 514 (852)
T 4fdd_A 481 LAYILDTLVFAFSKY-----Q--HKNLLILYDAIGTLADSV 514 (852)
T ss_dssp HHHHHHHHHHHHHHC-----C--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----C--hHHHHHHHHHHHHHHHHh
Confidence 999999999887543 1 123334577777776544
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.27 E-value=0.00054 Score=83.25 Aligned_cols=178 Identities=13% Similarity=0.038 Sum_probs=127.4
Q ss_pred hhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhccccc----chhhHHHHHH
Q 003135 220 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE----DISADVYSSL 295 (845)
Q Consensus 220 ~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~----~~l~~i~~~l 295 (845)
.+|..+.++..+++.++..+.+ ..+.. +..++...++ ++++..|..|++.+|.++....+ ..+.++++.+
T Consensus 340 ~~~~~r~~a~~~l~~l~~~~~~---~~~~~-~l~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l 413 (876)
T 1qgr_A 340 DDWNPCKAAGVCLMLLATCCED---DIVPH-VLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL 413 (876)
T ss_dssp TCCCHHHHHHHHHHHHHHHHGG---GGHHH-HHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCcH---hhHHH-HHHHHHHHcc--CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4799999999999999987653 22222 2234444455 57889999999999999886532 2467788899
Q ss_pred HHHHhhcCCCCCcccceeeccchhhhhhhccC--C--CCCCchhhHHHHhhccCccccchhHHHHHHHHHHhccc-----
Q 003135 296 LKALQMLDKGDTSCYPVRASAAGAIVGLLEND--Y--MPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAAN----- 366 (845)
Q Consensus 296 l~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~--~--l~p~i~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~~~----- 366 (845)
+++|.+++ ..||..|+.+|.++...- . ..|++.+++..++..+.+...=......++..+++.++
T Consensus 414 ~~~l~d~~------~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~ 487 (876)
T 1qgr_A 414 IELMKDPS------VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADV 487 (876)
T ss_dssp HHHHTCSS------HHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhCCCC------HHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99998876 899999999999998742 2 57899999999999776532013345677888887765
Q ss_pred ---------cccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhh
Q 003135 367 ---------ENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (845)
Q Consensus 367 ---------e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~ 413 (845)
+.+.||...++..|...+.+.-.+. ..+-...+++|+.+++..
T Consensus 488 ~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~----~~~r~~~~~~l~~l~~~~ 539 (876)
T 1qgr_A 488 ADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQ----NNLRSSAYESLMEIVKNS 539 (876)
T ss_dssp TTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCS----TTHHHHHHHHHHHHHHTC
T ss_pred ccccccccchhhhHhHHHHHHHHHHHHhCcCcch----hhHHHHHHHHHHHHHHHC
Confidence 3588999999888887764321111 133455677787777654
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.09 E-value=0.00069 Score=86.30 Aligned_cols=334 Identities=15% Similarity=0.128 Sum_probs=179.1
Q ss_pred eccCcceeehhhHHHhhhcccccchhhHHHHHHHHHHhhcccccchhhHHHHHHHhhhHHHHhhhhcCCCceeecchhhh
Q 003135 21 FKTGKRGLLIFSALVTRHRKFSDKLMPDIMNSVLQIVKYSANISKLDFLQERIISLAFDVISHVLETGPGWRLVSPHFSV 100 (845)
Q Consensus 21 ~K~kKwa~~il~rl~~Ry~~~~~~~~p~~l~~~l~ll~~~~~~~~~~~lsd~~v~~~l~fL~~~v~~~~~~~ll~p~l~~ 100 (845)
+..++-++..+..+....++.+.+|++.+++.+++.+.... . -+ ......++.++...+. +-+.|+++.
T Consensus 228 ~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~----~-~v-R~~a~~~l~~l~~~~~-----~~~~~~l~~ 296 (1230)
T 1u6g_C 228 MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDD----D-EL-REYCIQAFESFVRRCP-----KEVYPHVST 296 (1230)
T ss_dssp SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCC----T-TT-HHHHHHHHHHHHHCTT-----CCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC----H-HH-HHHHHHHHHHHHHHCh-----HHHHHhHHH
Confidence 45666677888888877777778889999999988886421 1 11 1233334444443322 356788887
Q ss_pred hhhhhccchhcccccc----cchhhhcHHHH-HHhcCCchhhhhhchhhh-hhhhhhhhcchheeeeecCCCCCCCCCCC
Q 003135 101 LLDKAIFPALVLNEKD----ISEWEEDADEY-IRKNFPSELEEISGWRED-LFTARKSAINLLGVISVSKGPPMGTPSNC 174 (845)
Q Consensus 101 Ll~~vIfP~l~~~e~D----~Elwe~DP~EY-Ir~~~d~~~~~~~~~~~d-~~s~R~AA~~lL~~L~~~~~~~~~~~~~~ 174 (845)
++..+ +..|...+.. .+.|.++.++. ...+.+..-++.+. .+| ....|.+|.+.|..+
T Consensus 297 li~~l-l~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~vR~~A~~~l~~l-------------- 360 (1230)
T 1u6g_C 297 IINIC-LKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD-DDDMSWKVRRAAAKCLDAV-------------- 360 (1230)
T ss_dssp HHHHH-TTCCCCC-------------------------------------CTTHHHHHHHHHHHHH--------------
T ss_pred HHHHH-HHHhCCCCCCCCcccccccccccccccccchhhccccccc-ccccCHHHHHHHHHHHHHH--------------
Confidence 77644 4444432211 11121111000 00000000000000 011 234699999999986
Q ss_pred CccchhhcccccccccccccccCCeeeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhh------------
Q 003135 175 SSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQ------------ 242 (845)
Q Consensus 175 ~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~------------ 242 (845)
+...++. +. .+++. +.+.+.++...+ +...+.+++.+++.+...+...
T Consensus 361 ---~~~~~~~------~~-~~~~~--l~~~l~~~l~d~--------~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 420 (1230)
T 1u6g_C 361 ---VSTRHEM------LP-EFYKT--VSPALISRFKER--------EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ 420 (1230)
T ss_dssp ---HTTCCTT------HH-HHHTT--THHHHHSTTSCS--------SSHHHHHHHHHHHHHHHHHCCC------------
T ss_pred ---HHhchhH------HH-HHHHH--HHHHHHHHcCCC--------chHHHHHHHHHHHHHHHHhccccccccCcccccc
Confidence 2211110 00 12221 112222221111 2334556666666554432110
Q ss_pred ---chhhHHHHHhhccccc----eeeeehhhhHhhhhhhHhhhhhcccc---cchhhHHHHHHHHHHhhcCCCCCcccce
Q 003135 243 ---KSEFTANLVRSRVLPL----YSVSVCLPYLVASANWILGELASCLP---EDISADVYSSLLKALQMLDKGDTSCYPV 312 (845)
Q Consensus 243 ---~~~~~e~fl~~~VlP~----l~~~s~~p~LrarA~~~l~~f~~~l~---~~~l~~i~~~ll~~L~~~~~~~~~~lpV 312 (845)
....+..++ ..++|. ++ ++.+..|..+|..++.+....+ ...+..+++.++..|.++.. ..-|
T Consensus 421 ~~~~~~~~~~~l-~~ll~~l~~~l~--~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~----~~~v 493 (1230)
T 1u6g_C 421 GETPLTMLQSQV-PNIVKALHKQMK--EKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS----SSNL 493 (1230)
T ss_dssp CCCHHHHHHHHT-THHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSS----CHHH
T ss_pred ccchHHHHHHHh-hHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCC----cchH
Confidence 001111222 223333 55 5677888899999999887643 23578899999999988752 1468
Q ss_pred eeccchhhhhhhcc---CCCCCCchhhHHHHhhccCccccc-hhHHHHHHHHHHhcccc-------ccccchhHHHHHHH
Q 003135 313 RASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANE-------NVADHIPYIVSSLV 381 (845)
Q Consensus 313 rv~AA~Al~~~l~~---~~l~p~i~~llq~Ll~~l~~e~~e-~d~l~~~L~~iV~~~~e-------~l~p~a~~l~~~L~ 381 (845)
|..|+.++..++.. +.+.|++.+++..|+..+.+.... ......++..+++.+++ .+.||...++..+.
T Consensus 494 ~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll 573 (1230)
T 1u6g_C 494 KIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTI 573 (1230)
T ss_dssp HHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHH
Confidence 99999999999763 246677778888887755543200 12245677778877766 78888888888887
Q ss_pred HHHHhhcCCCCCChHHHHHHHHHHHHHHHHhh
Q 003135 382 AAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (845)
Q Consensus 382 ~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~ 413 (845)
..+.+ ...+ +.+-+....+|+.++...
T Consensus 574 ~~l~~---~d~~--~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 574 KRLKA---ADID--QEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHSC---SSSC--HHHHHHHHHHHHHHHHHT
T ss_pred HHHhc---cCCC--HHHHHHHHHHHHHHHHHh
Confidence 77532 1122 355555677888887654
No 14
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.05 E-value=0.0012 Score=68.07 Aligned_cols=177 Identities=16% Similarity=0.082 Sum_probs=119.7
Q ss_pred hhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhccccc---chhhHHHHHHH
Q 003135 220 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE---DISADVYSSLL 296 (845)
Q Consensus 220 ~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~---~~l~~i~~~ll 296 (845)
++|+.+.+++..++.+...-.+...+....+ ...+...+.. .+++-+|..||.+++.++..+.+ .....+++.++
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i-~~~L~~~l~k-d~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll 104 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGAL-VSALKKVITK-DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLL 104 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHH-HHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHH-HHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4799999999999987754111011111222 2223333421 46788999999999999986533 35778899999
Q ss_pred HHHhhcCCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhhccCccc-cchhHHHHHHHHHHhccccc--cccch
Q 003135 297 KALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANEN--VADHI 373 (845)
Q Consensus 297 ~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~~l~~e~-~e~d~l~~~L~~iV~~~~e~--l~p~a 373 (845)
.+|.+++ ..||-.|+.||..++... .+..++..++..+.+.. .-.......|.+++..++.+ ..++.
T Consensus 105 ~~l~d~~------~~vr~~a~~aL~~~~~~~----~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 105 EKFKEKK------PNVVTALREAIDAIYAST----SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HGGGCCC------HHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHcCCC------HHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 9999887 899999999999998753 25677888888676543 12455777888888877532 44566
Q ss_pred hHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 003135 374 PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWEN 415 (845)
Q Consensus 374 ~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~~~ 415 (845)
..++..|...+ .+. .+.+-...+++|+.+....++
T Consensus 175 ~~l~p~l~~~l----~D~---~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 175 KLLTTSLVKTL----NEP---DPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHH----TSS---CHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHh----cCC---ChHHHHHHHHHHHHHHHHcCH
Confidence 66766666654 332 145666678888888876643
No 15
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.00095 Score=69.86 Aligned_cols=180 Identities=13% Similarity=0.135 Sum_probs=125.1
Q ss_pred hhhhhhHHHHHHhhc-hHHH---HhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccc-c----chhhH
Q 003135 220 RIQKDYFGVLMAYGG-LQEF---LREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP-E----DISAD 290 (845)
Q Consensus 220 ~~~k~kdgaL~~ig~-la~~---l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~-~----~~l~~ 290 (845)
.+|+.+-+++..++. +... +.....+| ..+ ...+.+.++. .+++.+|..||.+++++++.+. + .....
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~-~~~L~~~l~~-D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ 104 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNL-LGIYGHIIQK-DANIQAVALAAQSVELICDKLKTPGFSKDYVSL 104 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHH-HHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHH-HHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 579998888888877 6521 11001122 222 2334445622 5788999999999999998664 2 34567
Q ss_pred HHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccC-CCC--CCchhhHHHHhhccCccc-cchhHHHHHHHHHHhccc
Q 003135 291 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-YMP--PEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAAN 366 (845)
Q Consensus 291 i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~-~l~--p~i~~llq~Ll~~l~~e~-~e~d~l~~~L~~iV~~~~ 366 (845)
+++.++..+.+.. ..||-.|..|+..++.+- ... +++..+|..|+..|.+.. .-....+.+|.+++...+
T Consensus 105 llp~ll~~l~dkk------~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 105 VFTPLLDRTKEKK------PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHGGGCCC------HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 8888888888776 789999999999999842 233 348899999999886644 346667889999998887
Q ss_pred ---cccccch-hHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 003135 367 ---ENVADHI-PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWEN 415 (845)
Q Consensus 367 ---e~l~p~a-~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~~~ 415 (845)
+.+.|+. +.++..|...+ .+. + +.+-.-.+++|+.+.+..++
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l----~D~-~--~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIV----NDT-Q--PAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHH----TCS-S--HHHHHHHHHHHHHHHHHHCS
T ss_pred CcchhHHHHHHHHHHHHHHHHh----cCC-C--HHHHHHHHHHHHHHHHHhCH
Confidence 4577777 78888777665 332 2 35666678888888877644
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.14 E-value=0.0079 Score=76.55 Aligned_cols=153 Identities=14% Similarity=0.129 Sum_probs=114.0
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHh
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~ 300 (845)
+++.+++|+.+++.+.....+.-.++...++ ..+++.+. ++.+.+|.+|+..++.+....++..+..+++.+++.|.
T Consensus 147 ~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll-~~l~~~L~--~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~ 223 (1230)
T 1u6g_C 147 DVSVQLEALDIMADMLSRQGGLLVNFHPSIL-TCLLPQLT--SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELS 223 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSSCTTTHHHHH-HHHGGGGG--CSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhHhHHHHHHHHHH-HHHHHHHc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 5788999999999887654322223443333 44566677 57789999999999999988776667888999999998
Q ss_pred hcCCCCCcccceeeccchhhhhhhcc--CCCCCCchhhHHHHhhccCccccc-hhHHHHHHHHHHhccccccccchhHHH
Q 003135 301 MLDKGDTSCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIV 377 (845)
Q Consensus 301 ~~~~~~~~~lpVrv~AA~Al~~~l~~--~~l~p~i~~llq~Ll~~l~~e~~e-~d~l~~~L~~iV~~~~e~l~p~a~~l~ 377 (845)
+.+ +..+|..|+.++..+... ..+.|++..++..++..+..+..+ -+....++..++..+++.+.||.+.++
T Consensus 224 ~~~-----~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li 298 (1230)
T 1u6g_C 224 KND-----SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTII 298 (1230)
T ss_dssp HTC-----SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHH
T ss_pred cCC-----chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHH
Confidence 764 257899999999998874 377899999999999976654312 357788999999999999999877766
Q ss_pred HHHH
Q 003135 378 SSLV 381 (845)
Q Consensus 378 ~~L~ 381 (845)
..+.
T Consensus 299 ~~ll 302 (1230)
T 1u6g_C 299 NICL 302 (1230)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6544
No 17
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.98 E-value=0.005 Score=63.36 Aligned_cols=144 Identities=13% Similarity=0.063 Sum_probs=102.6
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHh
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~ 300 (845)
+.+...+++.++|.++..+.+...++++.++ ..++..+. .+.+.+|..|+..+..+....+ +..+++.++..|.
T Consensus 70 ~~~V~~~a~~~l~~la~~l~~~~~~~~~~il-p~ll~~l~--d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~ 143 (242)
T 2qk2_A 70 NVVLVAMAGKCLALLAKGLAKRFSNYASACV-PSLLEKFK--EKKPNVVTALREAIDAIYASTS---LEAQQESIVESLS 143 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGGHHHHHHHH-HHHHHGGG--CCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHc--CCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHc
Confidence 5677899999999999877642233433332 33344455 5778999999999999877653 5678899999998
Q ss_pred hcCCCCCcccceeeccchhhhhhhcc-C---CCCCCchhhHHHHhhccCccc-cchhHHHHHHHHHHhccccc-cccchh
Q 003135 301 MLDKGDTSCYPVRASAAGAIVGLLEN-D---YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANEN-VADHIP 374 (845)
Q Consensus 301 ~~~~~~~~~lpVrv~AA~Al~~~l~~-~---~l~p~i~~llq~Ll~~l~~e~-~e~d~l~~~L~~iV~~~~e~-l~p~a~ 374 (845)
+.+ ..||..++..|..++.. . ...++++.++..|+..+.+.. .--+.-..+|..+....+++ +.||..
T Consensus 144 ~~~------~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 144 NKN------PSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CSC------HHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred CCC------hHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 776 78999999999998764 1 456788889999998775443 11344566777766666655 666655
Q ss_pred HH
Q 003135 375 YI 376 (845)
Q Consensus 375 ~l 376 (845)
.|
T Consensus 218 ~L 219 (242)
T 2qk2_A 218 DV 219 (242)
T ss_dssp TS
T ss_pred hc
Confidence 44
No 18
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.93 E-value=0.0021 Score=80.45 Aligned_cols=162 Identities=13% Similarity=0.138 Sum_probs=108.8
Q ss_pred hhhhhHHHHHHhhchHHHHhhh-chhhHHHHHhhcc-ccceeee-ehhhhHhhhhhhHhhhhhccc--ccchhhHHHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQ-KSEFTANLVRSRV-LPLYSVS-VCLPYLVASANWILGELASCL--PEDISADVYSSL 295 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~-~~~~~e~fl~~~V-lP~l~~~-s~~p~LrarA~~~l~~f~~~l--~~~~l~~i~~~l 295 (845)
+|...+++++++|++|..+... .+.++.+.+.--+ +|+-..+ ..-+.+++..||++|+|...+ +++.+..++..+
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L 571 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKL 571 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHH
Confidence 5999999999999998554321 1222222221110 1221100 123467778899999999974 677899999999
Q ss_pred HHHHhhcCCCCCcccceeeccchhhhhhhccC----------CCCCCchhhHHHHhhccCccc-cchhHHHHHHHHHHhc
Q 003135 296 LKALQMLDKGDTSCYPVRASAAGAIVGLLEND----------YMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGA 364 (845)
Q Consensus 296 l~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~----------~l~p~i~~llq~Ll~~l~~e~-~e~d~l~~~L~~iV~~ 364 (845)
+..+.+++ ..|+-.||.|+..+++.. ...|++.++++.+-.....-. ...-.+.+++..++..
T Consensus 572 ~~~m~~~~------~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~ 645 (1073)
T 3gjx_A 572 FEFMHETH------DGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGA 645 (1073)
T ss_dssp HHHTTCCS------TTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCC------HHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 99998876 679999999999998743 235788888877766433322 2355688889999988
Q ss_pred ccccc-cc-chhHHHHHHHHHHHhhc
Q 003135 365 ANENV-AD-HIPYIVSSLVAAISKHM 388 (845)
Q Consensus 365 ~~e~l-~p-~a~~l~~~L~~~f~k~~ 388 (845)
.+.+. .| +...+++.+.+.+.+++
T Consensus 646 ~p~~~~~~~~i~~Lm~~~~~~w~~l~ 671 (1073)
T 3gjx_A 646 QTDQTVQEHLIEKYMLLPNQVWDSII 671 (1073)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 88765 23 55566666666655544
No 19
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.0083 Score=62.63 Aligned_cols=147 Identities=8% Similarity=0.079 Sum_probs=102.8
Q ss_pred hhhhhHHHHHHhhchHHHHh-hhch-hhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccc----hhhHHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLR-EQKS-EFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED----ISADVYSS 294 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~-~~~~-~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~----~l~~i~~~ 294 (845)
|.....+|+.++|.++..+. .... +|...++ ..|+.-+. ...+-+|..|...+..+....++. .+..+++.
T Consensus 74 n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ll-p~ll~~l~--dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~ 150 (249)
T 2qk1_A 74 NIQAVALAAQSVELICDKLKTPGFSKDYVSLVF-TPLLDRTK--EKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKD 150 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHH-HHHHHGGG--CCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccccccHHHHHHHH-HHHHHHHc--CCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHH
Confidence 45667999999999998886 4333 4543322 23344445 456788888888888887765322 25689999
Q ss_pred HHHHHhhcCCCCCcccceeeccchhhhhhhccCC-----CCCCc-hhhHHHHhhccCccccc-hhHHHHHHHHHHhcccc
Q 003135 295 LLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-----MPPEW-YPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANE 367 (845)
Q Consensus 295 ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~-----l~p~i-~~llq~Ll~~l~~e~~e-~d~l~~~L~~iV~~~~e 367 (845)
++.+|++++ ..||..|..+|.+++.... +.+++ ++++..|.+.+.+...+ -+.-+.+|..+...+++
T Consensus 151 l~~~l~~k~------~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 151 ILEHMKHKT------PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHTTCSS------HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCC------hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 999998876 7999999999999997532 44667 77777777765443311 33346677777777777
Q ss_pred c-cccchhHH
Q 003135 368 N-VADHIPYI 376 (845)
Q Consensus 368 ~-l~p~a~~l 376 (845)
. +.||+..|
T Consensus 225 ~~~~p~l~~L 234 (249)
T 2qk1_A 225 NTFVKTLEHL 234 (249)
T ss_dssp GGGHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 5 88887765
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.12 E-value=0.0076 Score=69.35 Aligned_cols=170 Identities=19% Similarity=0.188 Sum_probs=99.2
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccc-----hhhHHHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED-----ISADVYSSL 295 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~-----~l~~i~~~l 295 (845)
+|+.+.++..++|.++...... ....-+...++..++ .+.+-+|..|++.++.+...++++ .+..+++.+
T Consensus 255 ~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l 329 (588)
T 1b3u_A 255 SWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMK--DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCI 329 (588)
T ss_dssp SHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCcc---cchhHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHH
Confidence 6999999999999998765321 110111111112233 577899999999999999876433 467788888
Q ss_pred HHHHhhcCCCCCcccceeeccchhhhhhhcc---CCCCCCchhhHHHHhhccCccccc-hhHHHHHHHHHHhcccccccc
Q 003135 296 LKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVAD 371 (845)
Q Consensus 296 l~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~---~~l~p~i~~llq~Ll~~l~~e~~e-~d~l~~~L~~iV~~~~e~l~p 371 (845)
...+.+++ ..||..|+.+|..+... +...+++.|++..+++ .+..+ -.....++..++..++.+
T Consensus 330 ~~~l~d~~------~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~---d~~~~Vr~~a~~~l~~l~~~~~~~--- 397 (588)
T 1b3u_A 330 KELVSDAN------QHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK---DECPEVRLNIISNLDCVNEVIGIR--- 397 (588)
T ss_dssp HHHHTCSC------HHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHT---CSCHHHHHHHHTTCHHHHHHSCHH---
T ss_pred HHHhcCCC------HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHHHHhcCHH---
Confidence 88888876 78999999999988752 1222344455555543 22200 112334444455443321
Q ss_pred chhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhh
Q 003135 372 HIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (845)
Q Consensus 372 ~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~ 413 (845)
.+.+.+...+.+.+.+. .| ++-....++|+.+.+..
T Consensus 398 ---~~~~~~lp~l~~~~~d~--~~-~vr~~~~~~l~~l~~~~ 433 (588)
T 1b3u_A 398 ---QLSQSLLPAIVELAEDA--KW-RVRLAIIEYMPLLAGQL 433 (588)
T ss_dssp ---HHHHHHHHHHHHHHTCS--SH-HHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhcCC--Cc-hHHHHHHHHHHHHHHHc
Confidence 12233344444444432 23 55555566666666543
No 21
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.99 E-value=0.028 Score=71.56 Aligned_cols=254 Identities=14% Similarity=0.122 Sum_probs=142.7
Q ss_pred HHHHHHhhhHHHHhhhhcCC--Cceeecchhhhhhhhhc--cchhcccccccchhhhcHHHHHHhcCCchhhhhhchhhh
Q 003135 70 QERIISLAFDVISHVLETGP--GWRLVSPHFSVLLDKAI--FPALVLNEKDISEWEEDADEYIRKNFPSELEEISGWRED 145 (845)
Q Consensus 70 sd~~v~~~l~fL~~~v~~~~--~~~ll~p~l~~Ll~~vI--fP~l~~~e~D~Elwe~DP~EYIr~~~d~~~~~~~~~~~d 145 (845)
+..+...++.|-...++... ....+.+++..|+..+. +..|.+.+.+... -.+|...++|.. ++. .+.
T Consensus 364 ~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~----~~~~~~~D~d~~-~E~---~~~ 435 (1204)
T 3a6p_A 364 SQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSP----SCEYSRFDFDSD-EDF---NAF 435 (1204)
T ss_dssp CHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSST----HHHHHHHHCSSH-HHH---HHH
T ss_pred cHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCc----chhhhhcccCCc-HHH---HHH
Confidence 44556666777776665421 12346678888876541 3556676554320 134554455531 110 133
Q ss_pred hhhhhhhhcchheeeeecCCCCCCCCCCCCccchhhcccccccccccccccCCeeeeccccccCCCC-----------CC
Q 003135 146 LFTARKSAINLLGVISVSKGPPMGTPSNCSSVSSKRKKGEKSKRNSMRSTMGELLVLPFLSRFPIPC-----------DA 214 (845)
Q Consensus 146 ~~s~R~AA~~lL~~L~~~~~~~~~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~i~v~~~L~~y~~~~-----------~~ 214 (845)
+..-|+...++++.+ +...+.. .++ .+.. ++.+.+.+..... ++
T Consensus 436 f~~~Rk~~~d~l~~i-----------------~~v~p~~-----~l~-~v~~--~l~~~l~~~l~~~~~~~~~~~~~~~~ 490 (1204)
T 3a6p_A 436 FNSSRAQQGEVMRLA-----------------CRLDPKT-----SFQ-MAGE--WLKYQLSTFLDAGSVNSCSAVGTGEG 490 (1204)
T ss_dssp HHHHHHHHHHHHHHH-----------------HHHCHHH-----HHH-HHHH--HHHHHHTCC-----------------
T ss_pred HHHHHHHHHHHHHHH-----------------HhcCHHH-----HHH-HHHH--HHHHHHhhhhcccccccccccccccc
Confidence 567888889999985 4333321 010 0011 1111111110000 00
Q ss_pred ---chhhhhhhhhhHHHHHHhhchHHHHhhhc-hhh-----HHHHHhhccccceeeeehhhhHhhhhhhHhhhhhccc--
Q 003135 215 ---NASHSRIQKDYFGVLMAYGGLQEFLREQK-SEF-----TANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-- 283 (845)
Q Consensus 215 ---~~~~~~~~k~kdgaL~~ig~la~~l~~~~-~~~-----~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l-- 283 (845)
+. ....|...|+...+++++.....+.. ++. ...++. . ++.++ ..+|.+|.|++.++|.|...+
T Consensus 491 ~~~~~-~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~-~-ll~~~--~~~p~l~~~~i~~l~~l~~~~~~ 565 (1204)
T 3a6p_A 491 SLCSV-FSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQ-M-VLNFD--TKDPLILSCVLTNVSALFPFVTY 565 (1204)
T ss_dssp CCSCS-SSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHH-H-HHHCC--CSCHHHHHHHHHHHHHHGGGGGT
T ss_pred cccCc-CCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH-H-HHhCC--CCChHHHHHHHHHHHHHHHHHhc
Confidence 00 13468999999999999887663311 111 122322 1 12222 357889999999999888874
Q ss_pred ccchhhHHHHHHHHHHhhcCCCCC------cccceeeccchhhhhhhcc--CCCCCCchhhHHHHhhccCcc---c-cch
Q 003135 284 PEDISADVYSSLLKALQMLDKGDT------SCYPVRASAAGAIVGLLEN--DYMPPEWYPLLQVIVGRIGYE---D-EEN 351 (845)
Q Consensus 284 ~~~~l~~i~~~ll~~L~~~~~~~~------~~lpVrv~AA~Al~~~l~~--~~l~p~i~~llq~Ll~~l~~e---~-~e~ 351 (845)
.++.+..+++.++..+.+...+.. +.--||..|+.|+.++... +.+.|++.++.+.+-..++.. . .+.
T Consensus 566 ~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~ 645 (1204)
T 3a6p_A 566 RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEK 645 (1204)
T ss_dssp CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHH
T ss_pred CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHH
Confidence 567899999999999876311000 1235889999999999875 478899998887666544311 1 244
Q ss_pred hHHHHHHHHH
Q 003135 352 SILFELLSSV 361 (845)
Q Consensus 352 d~l~~~L~~i 361 (845)
-.+..++-.+
T Consensus 646 ~~L~eal~~i 655 (1204)
T 3a6p_A 646 CALMEALVLI 655 (1204)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566666554
No 22
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=94.93 E-value=0.056 Score=65.26 Aligned_cols=176 Identities=11% Similarity=0.024 Sum_probs=116.8
Q ss_pred hhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccc-c---chhhHHHHHH
Q 003135 220 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP-E---DISADVYSSL 295 (845)
Q Consensus 220 ~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~-~---~~l~~i~~~l 295 (845)
..|..+.++..+++.++..+... .+ ..+..++...++ ++.+-.|..|++.+|..+.... . ..+..+++.+
T Consensus 343 ~~~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l 416 (861)
T 2bpt_A 343 DDWNVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNIT--ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416 (861)
T ss_dssp CCCHHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcC--CCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 35788889999999988776431 11 222233333344 4567899999999999987543 2 2356677888
Q ss_pred HHHHhhcCCCCCcccceeeccchhhhhhhcc--CCC--CCCchhhHHHHhhccCccccchhHHHHHHHHHHhccc----c
Q 003135 296 LKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYM--PPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAAN----E 367 (845)
Q Consensus 296 l~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~--~~l--~p~i~~llq~Ll~~l~~e~~e~d~l~~~L~~iV~~~~----e 367 (845)
++.+.+++ ..||..|+.+|.++... ..+ .+++.+++..+++.+.+...--.....++..+++.++ +
T Consensus 417 ~~~l~d~~------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~ 490 (861)
T 2bpt_A 417 LNLMNDQS------LQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPS 490 (861)
T ss_dssp HHGGGCSC------HHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred HHHcCCCc------HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccch
Confidence 88888776 88999999999988863 222 5678888888888665421012234566777777765 6
Q ss_pred ccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHh
Q 003135 368 NVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 412 (845)
Q Consensus 368 ~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~ 412 (845)
.+.||.+.++..|...+.+ ...+ +.+-...+++|+.++..
T Consensus 491 ~l~~~~~~il~~L~~~l~~---~d~~--~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 491 PIYNFYPALVDGLIGAANR---IDNE--FNARASAFSALTTMVEY 530 (861)
T ss_dssp GGGGGHHHHHHHHHHHHTC---SCCG--GGHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhC---cCcc--hHHHHHHHHHHHHHHHH
Confidence 6889998888888776532 1111 13444567777777654
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.80 E-value=0.016 Score=64.44 Aligned_cols=113 Identities=12% Similarity=-0.024 Sum_probs=86.2
Q ss_pred hhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccc----cchhhHHHHHH
Q 003135 220 RIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLP----EDISADVYSSL 295 (845)
Q Consensus 220 ~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~----~~~l~~i~~~l 295 (845)
.+|..+.+|..+++.++..+.+ .+...+..++...++ ++.+..|..|+..+|.++...+ ...+..+++.+
T Consensus 340 ~~~~~r~~a~~~L~~l~~~~~~----~~~~~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l 413 (462)
T 1ibr_B 340 DDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL 413 (462)
T ss_dssp TCCSHHHHHHHHHHHHHHHTTT----THHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 4688999999999999877542 122223334444455 5788999999999999987532 23468899999
Q ss_pred HHHHhhcCCCCCcccceeeccchhhhhhhcc--CC--CCCCchhhHHHHhhcc
Q 003135 296 LKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DY--MPPEWYPLLQVIVGRI 344 (845)
Q Consensus 296 l~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~--~~--l~p~i~~llq~Ll~~l 344 (845)
+++|.+++ ..||..|+.||.++... +. ..+++.+++..|++.|
T Consensus 414 ~~~l~d~~------~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 414 IELMKDPS------VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHGGGCSC------HHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHhcCCC------HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 99999887 89999999999999873 23 3689999999999865
No 24
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=92.07 E-value=0.066 Score=61.40 Aligned_cols=136 Identities=13% Similarity=-0.002 Sum_probs=69.2
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccc-hhhHHHHHHHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED-ISADVYSSLLKAL 299 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~-~l~~i~~~ll~~L 299 (845)
+|+.+.+++.+++.++..+... +..+-+...++..++ .+.+-+|..|+..++.+...+.++ ....+++.+...+
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~ 489 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLV--DHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMS 489 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 5666666666666666544321 111111122222234 455677777777777777665332 2345556665555
Q ss_pred hhcCCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhhccCccccc-hhHHHHHHHHHHhcccc
Q 003135 300 QMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANE 367 (845)
Q Consensus 300 ~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~~l~~e~~e-~d~l~~~L~~iV~~~~e 367 (845)
.+++ ..||..|+.++..+...-.-..+...++..|++.+.+...+ -.....++..++..++.
T Consensus 490 ~~~~------~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 490 GDPN------YLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp TCSC------HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred hCCC------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 5544 67777777777777652100112334444555544333201 22345666666655543
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=91.11 E-value=0.43 Score=55.76 Aligned_cols=109 Identities=11% Similarity=0.008 Sum_probs=75.4
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhh--HHHHHHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISA--DVYSSLLKA 298 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~--~i~~~ll~~ 298 (845)
|...+-.||+.+|.+. . . -+.+.+...|...+. +++|++|..|++.++++...- ++.+. .+++.+..+
T Consensus 99 n~~ir~~AL~~L~~i~---~---~-~~~~~l~~~l~~~L~--d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~l 168 (591)
T 2vgl_B 99 NPLIRALAVRTMGCIR---V---D-KITEYLCEPLRKCLK--DEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDL 168 (591)
T ss_dssp SHHHHHHHHHHHHTCC---S---G-GGHHHHHHHHHHHSS--CSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCC---h---H-HHHHHHHHHHHHHcC--CCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHH
Confidence 4556677888887764 1 1 122333333444455 689999999999999998743 33343 578899999
Q ss_pred HhhcCCCCCcccceeeccchhhhhhhccCC---CCCCchhhHHHHhhccC
Q 003135 299 LQMLDKGDTSCYPVRASAAGAIVGLLENDY---MPPEWYPLLQVIVGRIG 345 (845)
Q Consensus 299 L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~---l~p~i~~llq~Ll~~l~ 345 (845)
|.|++ .-|+..|+.||..+..+.. ..+..++.+..|++.+.
T Consensus 169 L~d~d------~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~ 212 (591)
T 2vgl_B 169 IADSN------PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALN 212 (591)
T ss_dssp TSCSC------HHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHH
T ss_pred hCCCC------hhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCC
Confidence 98877 8899999999999887542 34455566777777553
No 26
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=90.68 E-value=0.17 Score=59.68 Aligned_cols=119 Identities=15% Similarity=0.224 Sum_probs=79.6
Q ss_pred HHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHH--hhcCCCCCcccceeeccchhhhhhhccC
Q 003135 250 LVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKAL--QMLDKGDTSCYPVRASAAGAIVGLLEND 327 (845)
Q Consensus 250 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L--~~~~~~~~~~lpVrv~AA~Al~~~l~~~ 327 (845)
+..+.+.-+++ +++|+.|+-|..+++.++. +++...+.+.+.++| .+++ .-||=.||.|+.++.+..
T Consensus 111 L~iN~l~kDl~--~~n~~ir~lALr~L~~i~~---~e~~~~l~~~v~~~l~~~d~~------~~VRK~A~~al~kl~~~~ 179 (621)
T 2vgl_A 111 LINNAIKNDLA--SRNPTFMGLALHCIANVGS---REMAEAFAGEIPKILVAGDTM------DSVKQSAALCLLRLYRTS 179 (621)
T ss_dssp HHHHHHHHHHH--SCCHHHHHHHHHHHHHHCC---HHHHHHHTTHHHHHHHCSSSC------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHHHHhC
Confidence 44455566777 7899999999999999865 667888999999999 6666 899999999999999843
Q ss_pred -CCCC--CchhhHHHHhhccCccccchhHHHH---HHHHHHhccccccccchhHHHHHHHHHH
Q 003135 328 -YMPP--EWYPLLQVIVGRIGYEDEENSILFE---LLSSVVGAANENVADHIPYIVSSLVAAI 384 (845)
Q Consensus 328 -~l~p--~i~~llq~Ll~~l~~e~~e~d~l~~---~L~~iV~~~~e~l~p~a~~l~~~L~~~f 384 (845)
.+.+ .+.+.+..++. +. +...+.. ++..+...-.+...++.+.+++.|.+.+
T Consensus 180 p~~~~~~~~~~~l~~lL~---d~--d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll 237 (621)
T 2vgl_A 180 PDLVPMGDWTSRVVHLLN---DQ--HLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIV 237 (621)
T ss_dssp GGGCCCCSCHHHHHHHTT---CS--CHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHH
T ss_pred hhhcCchhHHHHHHHHhC---CC--CccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 3333 56555555543 22 2333333 3344444333334455555665555443
No 27
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=90.53 E-value=0.15 Score=54.60 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=62.7
Q ss_pred hhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceee--eehhhhHhhhhhhHhhhhhcccccc--h--hhHHHHHHH
Q 003135 223 KDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPED--I--SADVYSSLL 296 (845)
Q Consensus 223 k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~--~--l~~i~~~ll 296 (845)
..+..|++++++++.. +.+....|.....+|.+.. .++.+-+|.+|||.++.++..-++. . -..+++.++
T Consensus 140 ~v~~~A~~ALsnl~~~----~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 140 TVRVKALFAISCLVRE----QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp HHHHHHHHHHHHHHTT----CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcC----CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 4567788888877621 1222233333333333321 1577899999999999987652211 1 234778889
Q ss_pred HHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 297 KALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 297 ~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
..|..++ ..||..|+.||.+++..
T Consensus 216 ~LL~~~d------~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTEH------SPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSCC------STHHHHHHHHHHHHHTT
T ss_pred HHHcCCC------hhHHHHHHHHHHHHHhC
Confidence 9998876 78999999999999875
No 28
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.52 E-value=0.71 Score=56.78 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=91.1
Q ss_pred hhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhh-cCCCCCcccceeeccchhhhhhhcc-CCCCCCchhhHHHHh
Q 003135 264 CLPYLVASANWILGELASCLPEDISADVYSSLLKALQM-LDKGDTSCYPVRASAAGAIVGLLEN-DYMPPEWYPLLQVIV 341 (845)
Q Consensus 264 ~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~-~~~~~~~~lpVrv~AA~Al~~~l~~-~~l~p~i~~llq~Ll 341 (845)
+...-|-.||+.+|..+...++. ....++.++..|.. .+ ++..||..|+.++.++.+. ..-.+++++++..++
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~-~~~~l~~l~~~l~~l~~----~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~ 535 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVN-YSDVVPGLIGLIPRISI----SNVQLADTVMFTIGALSEWLADHPVMINSVLPLVL 535 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSS-CCSHHHHHHHHGGGSCC----CSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCch-hhHHHHHHHHHHHhCCC----CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 34455666899999998875322 12233334433321 11 1367999999999988752 111245677777777
Q ss_pred hccCccccchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhh
Q 003135 342 GRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (845)
Q Consensus 342 ~~l~~e~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~ 413 (845)
..|.+.. =...-..++.++++..++.+.||..+|++.|...+.+- ... +...+.++++++.++.+.
T Consensus 536 ~~l~~~~-V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~---~~~--~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 536 HALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ---IHK--TSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHTTCGG-GHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT---CSC--HHHHHHHHHHHHHHHTTS
T ss_pred HHhCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC---CCC--hHHHHHHHHHHHHHHhcC
Confidence 7665422 13456778888999899999999999999998877531 112 366777899998887543
No 29
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=90.04 E-value=0.71 Score=53.89 Aligned_cols=143 Identities=16% Similarity=0.119 Sum_probs=88.3
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHh
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~ 300 (845)
+...|-.++.+++.+++. ..+. ..+..+.+..+++ ++.|++|+.|...++.++ .++....+.+.+.++|.
T Consensus 62 ~~~~Krl~yl~l~~~~~~----~~e~-~~l~~n~l~kdL~--~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~ 131 (591)
T 2vgl_B 62 NLELKKLVYLYLMNYAKS----QPDM-AIMAVNSFVKDCE--DPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLK 131 (591)
T ss_dssp CHHHHHHHHHHHHHHHHH----SHHH-HHTTHHHHGGGSS--SSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHccc----CchH-HHHHHHHHHHHcC--CCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcC
Confidence 345555555555554432 1222 2334455566777 789999999998888775 46677788899999999
Q ss_pred hcCCCCCcccceeeccchhhhhhhccCCCCCCc-h--hhHHHHhhccCccccchhHHHHHH---HHHHhccccc-cccch
Q 003135 301 MLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW-Y--PLLQVIVGRIGYEDEENSILFELL---SSVVGAANEN-VADHI 373 (845)
Q Consensus 301 ~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i-~--~llq~Ll~~l~~e~~e~d~l~~~L---~~iV~~~~e~-l~p~a 373 (845)
+++ .-||-.||.|+.++.... |.. + .++..+...|.+. +......++ ..+...-.+. ..+..
T Consensus 132 d~~------~~VRk~A~~al~~i~~~~---p~~~~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 132 DED------PYVRKTAAVCVAKLHDIN---AQMVEDQGFLDSLRDLIADS--NPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp CSC------HHHHHHHHHHHHHHHHSS---CCCHHHHHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred CCC------hHHHHHHHHHHHHHHhhC---hhhcccccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 887 899999999999998742 222 2 3666677755432 233434444 4443332222 23344
Q ss_pred hHHHHHHHHHH
Q 003135 374 PYIVSSLVAAI 384 (845)
Q Consensus 374 ~~l~~~L~~~f 384 (845)
+..+..|+..+
T Consensus 201 ~~~~~~Ll~~l 211 (591)
T 2vgl_B 201 PQNINKLLTAL 211 (591)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 45555555543
No 30
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=89.55 E-value=0.23 Score=56.90 Aligned_cols=177 Identities=14% Similarity=0.181 Sum_probs=97.2
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhcc----ccceeeeehhhhHhhhhhhHhhhhhcccccc---h-hhHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRV----LPLYSVSVCLPYLVASANWILGELASCLPED---I-SADVY 292 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~V----lP~l~~~s~~p~LrarA~~~l~~f~~~l~~~---~-l~~i~ 292 (845)
++..+..|+.++|.++.. .......++...+ +..++ ++.+-+|..|||.++.++..-+.. . -..++
T Consensus 312 ~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~L~~lL~--~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l 385 (530)
T 1wa5_B 312 STLVQTPALRAVGNIVTG----NDLQTQVVINAGVLPALRLLLS--SPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385 (530)
T ss_dssp CHHHHHHHHHHHHHHTTS----CHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred ChhhHHHHHHHHHHHHcC----CHHHHHHHHHcchHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 456677788888776521 0111122222223 33344 567899999999999998642211 1 13567
Q ss_pred HHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCC----CCCc--hhhHHHHhhccCcccc-chhHHHHHHHHHHhcc
Q 003135 293 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYM----PPEW--YPLLQVIVGRIGYEDE-ENSILFELLSSVVGAA 365 (845)
Q Consensus 293 ~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l----~p~i--~~llq~Ll~~l~~e~~-e~d~l~~~L~~iV~~~ 365 (845)
+.++..|.+++ ..||..|+.||.++.....- ..++ ..++..|+..+..... --.....+|..++...
T Consensus 386 ~~L~~lL~~~~------~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 386 PPLVKLLEVAE------YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHSC------HHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 88899998776 88999999999999874210 0011 1245555554443320 1223455566665544
Q ss_pred cc-------ccccchhHHHHH-HHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 003135 366 NE-------NVADHIPYIVSS-LVAAISKHMHPSSEPWPQVVERGFAALALMAQSWEN 415 (845)
Q Consensus 366 ~e-------~l~p~a~~l~~~-L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~~~ 415 (845)
.. .+.|++..+... ....+..+...+ + +.+.+. +...+.+++..
T Consensus 460 ~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~-~--~~v~~~---a~~il~~~~~~ 511 (530)
T 1wa5_B 460 EADKEARGLNINENADFIEKAGGMEKIFNCQQNE-N--DKIYEK---AYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCS-C--HHHHHH---HHHHHHHHSSS
T ss_pred hhhhhcccccccHHHHHHHHcCcHHHHHHHHcCC-C--HHHHHH---HHHHHHHHCCc
Confidence 32 245566555443 344444544432 2 244443 44555556543
No 31
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=89.48 E-value=2.5 Score=52.61 Aligned_cols=119 Identities=12% Similarity=0.040 Sum_probs=80.8
Q ss_pred hhHhhhhh-hHhhhhhccccc---------chhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc-CCCCCCch
Q 003135 266 PYLVASAN-WILGELASCLPE---------DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-DYMPPEWY 334 (845)
Q Consensus 266 p~LrarA~-~~l~~f~~~l~~---------~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~-~~l~p~i~ 334 (845)
++-..-|+ -.++.++..+.. ..+.++++.+.+.+.+. -...++..||..+..++.++-+- ..=+.+++
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~-i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~ 534 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQ-VCRHPHPLVQLLYMEILVRYASFFDYESAAIP 534 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSS-TTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHH
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCC-CCCCCCHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 34444333 555666665321 23556777777766522 11123588999999999887652 11246788
Q ss_pred hhHHHHhh--ccCccc-cchhHHHHHHHHHHhccccccccchhHHHHHHHHHHH
Q 003135 335 PLLQVIVG--RIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAIS 385 (845)
Q Consensus 335 ~llq~Ll~--~l~~e~-~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~ 385 (845)
++|+.++. .+.+.. .=......++.++++..+..+.||+..|++++...+.
T Consensus 535 ~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 535 ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 99999998 776543 1245577889999999999999999999988877654
No 32
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=89.22 E-value=0.046 Score=60.58 Aligned_cols=133 Identities=16% Similarity=0.147 Sum_probs=76.9
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhcc----ccceeeeehhhhHhhhhhhHhhhhhccccc---chh-hHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRV----LPLYSVSVCLPYLVASANWILGELASCLPE---DIS-ADVY 292 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~V----lP~l~~~s~~p~LrarA~~~l~~f~~~l~~---~~l-~~i~ 292 (845)
++..+..|+.+++.++..- ......++...+ +..++ ++.+-+|..|+|.++.++..-+. ..+ ..++
T Consensus 247 ~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~l~~L~~ll~--~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l 320 (450)
T 2jdq_A 247 DYKVVSPALRAVGNIVTGD----DIQTQVILNCSALQSLLHLLS--SPKESIKKEACWTISNITAGNRAQIQTVIDANIF 320 (450)
T ss_dssp CHHHHHHHHHHHHHHTTSC----HHHHHHHHTTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred chhHHHHHHHHHHHHhhCC----hHHHHHHHHCccHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 4566777777777765321 111112222223 33344 56789999999999999863221 111 3678
Q ss_pred HHHHHHHhhcCCCCCcccceeeccchhhhhhhcc-C--CCCCCc-hhhHHHHhhccCccccc-hhHHHHHHHHHHhcc
Q 003135 293 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-D--YMPPEW-YPLLQVIVGRIGYEDEE-NSILFELLSSVVGAA 365 (845)
Q Consensus 293 ~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~-~--~l~p~i-~~llq~Ll~~l~~e~~e-~d~l~~~L~~iV~~~ 365 (845)
+.+++.|.+++ ..||..|+.||.++... . .+...+ ..++..|+..+.....+ -.....+|..++...
T Consensus 321 ~~L~~~l~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 321 PALISILQTAE------FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHSC------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC------HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 88999998876 78999999999999864 1 111111 12455555544433201 223445555555533
No 33
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=89.14 E-value=0.59 Score=54.96 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=55.5
Q ss_pred HHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 250 LVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 250 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
+..+.+.-+++ +++|+.|+-|.+++|..+. +++...+++.+.++|.+++ .-||-.|+.|+.++...
T Consensus 107 l~in~l~kDL~--~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~~~------~~VRk~A~~al~~l~~~ 172 (618)
T 1w63_A 107 LMTNCIKNDLN--HSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSN------SYLRKKAALCAVHVIRK 172 (618)
T ss_dssp HHHHHHHHHHS--CSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHSCC------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHH
Confidence 34445555677 7999999999999999874 5667788999999999987 89999999999999874
No 34
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=87.50 E-value=0.75 Score=56.86 Aligned_cols=179 Identities=8% Similarity=0.085 Sum_probs=108.5
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhccc----------cc----c
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL----------PE----D 286 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l----------~~----~ 286 (845)
....+..|+.++|.+++.+. +.+....+. .++..+. ++.+.+|..||+.+..|.... .. .
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~-~l~~~L~--d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p 544 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLT---KAQLIELMP-ILATFLQ--TDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSC---HHHHHHHHH-HHHHHTT--CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred CceehHHHHHHHHHHHhhCC---HHHHHHHHH-HHHHHhC--CCChhHHHHHHHHHHHHHhcccccccccccccHHHhhh
Confidence 46789999999999887652 223333221 2223344 457899999999999987631 11 2
Q ss_pred hhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc--cCCCCCCchhhHHHHhhccCcc----c--cchhHHHHHH
Q 003135 287 ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE--NDYMPPEWYPLLQVIVGRIGYE----D--EENSILFELL 358 (845)
Q Consensus 287 ~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~--~~~l~p~i~~llq~Ll~~l~~e----~--~e~d~l~~~L 358 (845)
.+..+++.++.++.....- .......-.+..||..++. .+.+.|++.++++.|+..+... . .-...++.+|
T Consensus 545 ~l~~ll~~L~~ll~~~~~~-~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l 623 (960)
T 1wa5_C 545 STEILLKNLIALILKHGSS-PEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESI 623 (960)
T ss_dssp THHHHHHHHHHHHHTTCCC-HHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCC-CCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 3566777777777653100 0001144567788888876 3578899999998888755432 1 0123467788
Q ss_pred HHHHhccc-cccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhh
Q 003135 359 SSVVGAAN-ENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 413 (845)
Q Consensus 359 ~~iV~~~~-e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~ 413 (845)
..++...+ +.+.++...++..+... +.+... .+.+|+|..++.+....
T Consensus 624 ~~l~~~~~~~~~~~~~~~~~p~~~~i----L~~~~~---~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 624 GAILNYTQRQNLPLLVDSMMPTFLTV----FSEDIQ---EFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHTSCGGGHHHHHHHHHHHHHHH----HHTTCT---TTHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHH----HHhhhH---hhHHHHHHHHHHHHHhc
Confidence 77777622 33444444455444444 333222 46778888888877653
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=86.88 E-value=0.31 Score=48.00 Aligned_cols=94 Identities=18% Similarity=0.169 Sum_probs=63.2
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccc----cceeeeehhhhHhhhhhhHhhhhhccccc--ch--hhHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVL----PLYSVSVCLPYLVASANWILGELASCLPE--DI--SADVY 292 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~Vl----P~l~~~s~~p~LrarA~~~l~~f~~~l~~--~~--l~~i~ 292 (845)
++..+..|+.+++.++.. .......++...++ ..+. ++.+-+|..|+|.++.++..-+. .. -..++
T Consensus 25 ~~~v~~~a~~~L~~l~~~----~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i 98 (210)
T 4db6_A 25 DQQELQSALRKLSQIASG----GNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98 (210)
T ss_dssp CHHHHHHHHHHHHHHHTS----CHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHHcC----CHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCH
Confidence 466778888888887732 11111223322333 3344 56789999999999999753211 11 12367
Q ss_pred HHHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 293 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 293 ~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
+.++..|.+++ ..||..|+.||.++...
T Consensus 99 ~~L~~lL~~~~------~~v~~~a~~~L~~l~~~ 126 (210)
T 4db6_A 99 PALVQLLSSPN------EQILQEALWALSNIASG 126 (210)
T ss_dssp HHHHHHTTCSC------HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCc------HHHHHHHHHHHHHHHcC
Confidence 88999998876 88999999999999864
No 36
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=86.80 E-value=0.58 Score=47.32 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=63.2
Q ss_pred hhhhHHHHHHhhchHHHHhhhchhhHHHHHhh----ccccceeeeehhhhHhhhhhhHhhhhhccccc---c-hhhHHHH
Q 003135 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRS----RVLPLYSVSVCLPYLVASANWILGELASCLPE---D-ISADVYS 293 (845)
Q Consensus 222 ~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~----~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~---~-~l~~i~~ 293 (845)
...+..|+.+++.++..-. .....++.. .++..++ ++.+-+|..|+|.++.++..-+. . .-..+++
T Consensus 68 ~~v~~~a~~~L~~l~~~~~----~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 141 (252)
T 4db8_A 68 EQILQEALWALSNIASGGN----EQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCH----HHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhcCCH----HHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHH
Confidence 4567788888887763211 111222222 2233344 56789999999999999875321 1 1234788
Q ss_pred HHHHHHhhcCCCCCcccceeeccchhhhhhhccC
Q 003135 294 SLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 327 (845)
Q Consensus 294 ~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~ 327 (845)
.+++.|.+++ ..||..|+.+|.++....
T Consensus 142 ~L~~lL~~~~------~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 142 ALVQLLSSPN------EQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHGGGCSC------HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhCCC------HHHHHHHHHHHHHHHcCC
Confidence 9999998776 789999999999998743
No 37
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=82.45 E-value=0.3 Score=55.74 Aligned_cols=134 Identities=14% Similarity=0.159 Sum_probs=76.0
Q ss_pred hhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceee--eeh-hhhHhhhhhhHhhhhhcccccc----hhhHHHHH
Q 003135 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVC-LPYLVASANWILGELASCLPED----ISADVYSS 294 (845)
Q Consensus 222 ~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~--~s~-~p~LrarA~~~l~~f~~~l~~~----~l~~i~~~ 294 (845)
+..+..|+.++|.++.. .......++...++|.+.. .++ .+-+|..|||+++.++..-+.. .-..+++.
T Consensus 300 ~~v~~~a~~~L~nl~~~----~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~ 375 (528)
T 4b8j_A 300 PSVLIPALRTVGNIVTG----DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGP 375 (528)
T ss_dssp HHHHHHHHHHHHHHTTS----CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHcC----CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHH
Confidence 45667777777776631 1111222333333333321 145 7899999999999998642211 11256788
Q ss_pred HHHHHhhcCCCCCcccceeeccchhhhhhhccC--CCCCCc--hhhHHHHhhccCcccc-chhHHHHHHHHHHhcc
Q 003135 295 LLKALQMLDKGDTSCYPVRASAAGAIVGLLEND--YMPPEW--YPLLQVIVGRIGYEDE-ENSILFELLSSVVGAA 365 (845)
Q Consensus 295 ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~--~l~p~i--~~llq~Ll~~l~~e~~-e~d~l~~~L~~iV~~~ 365 (845)
++..|.+.+ ..||..|+.||.++.... ....++ ..++..|+.+|..... --.....+|..++...
T Consensus 376 L~~lL~~~~------~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 376 LVNLLQTAE------FDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHSC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC------HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 899998876 889999999999998752 111111 1234455554443330 1223445555555544
No 38
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=82.04 E-value=2.1 Score=53.55 Aligned_cols=141 Identities=11% Similarity=0.100 Sum_probs=94.4
Q ss_pred hhhHhhhhhhHhhhhhccccc----chhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc-CCCCCCchhhHHH
Q 003135 265 LPYLVASANWILGELASCLPE----DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-DYMPPEWYPLLQV 339 (845)
Q Consensus 265 ~p~LrarA~~~l~~f~~~l~~----~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~-~~l~p~i~~llq~ 339 (845)
.---|-.|||.+|..+..+.+ ..+.++++.+++.+.... +..+...||-.++..|.++.+- ..=+.+++++|+.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~-~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~ 544 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKR-GKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILK 544 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccc-cCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 345566789999999887532 357788888888776311 0001266777777888776541 0012357889999
Q ss_pred HhhccCcccc-chhHHHHHHHHHHhcccccc--------ccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHH
Q 003135 340 IVGRIGYEDE-ENSILFELLSSVVGAANENV--------ADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMA 410 (845)
Q Consensus 340 Ll~~l~~e~~-e~d~l~~~L~~iV~~~~e~l--------~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~ 410 (845)
|+..+..... =.+.-..++..+.+.++..+ .||..+|++.+.+++.++ + ++-.+.++++++.+.
T Consensus 545 L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l-----~--~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 545 LFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADL-----Q--PQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS-----C--HHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhC-----C--HHHHHHHHHHHHHHH
Confidence 9997743320 13445667777777777655 689999999998887542 2 355678899999999
Q ss_pred Hhh
Q 003135 411 QSW 413 (845)
Q Consensus 411 ~~~ 413 (845)
++.
T Consensus 618 ~~~ 620 (1023)
T 4hat_C 618 SEE 620 (1023)
T ss_dssp TTC
T ss_pred HhC
Confidence 865
No 39
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=80.75 E-value=0.22 Score=55.01 Aligned_cols=96 Identities=9% Similarity=0.065 Sum_probs=63.5
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceee--eehhhhHhhhhhhHhhhhhcccccchh-----hHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPEDIS-----ADVYS 293 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~~l-----~~i~~ 293 (845)
++..+..|+.++|.++.. .......++...++|.+-. .++.+-+|..|||.++.++...+++.. ..+++
T Consensus 289 ~~~vr~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~ 364 (450)
T 2jdq_A 289 KESIKKEACWTISNITAG----NRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364 (450)
T ss_dssp SHHHHHHHHHHHHHHTTS----CHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHHHcC----CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 456778888888887631 1112223333334443321 156788999999999999765332222 24778
Q ss_pred HHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 294 SLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 294 ~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
.++..|.+++ ..||..|+.||.+++..
T Consensus 365 ~L~~ll~~~~------~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 365 PLCDLLTVMD------SKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHGGGSSC------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC------HHHHHHHHHHHHHHHHh
Confidence 8888888765 78999999999999874
No 40
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=80.31 E-value=1.8 Score=43.53 Aligned_cols=136 Identities=17% Similarity=0.162 Sum_probs=76.0
Q ss_pred ehhhhHhhhhhhHhhhhhccccc--chh--hHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCC-CC--chh
Q 003135 263 VCLPYLVASANWILGELASCLPE--DIS--ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP-PE--WYP 335 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~--~~l--~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~-p~--i~~ 335 (845)
++.+-+|..|+|.++.++..-+. ..+ ..+++.++..|.+++ ..||..|+.+|.++...+... .. -..
T Consensus 65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 138 (252)
T 4db8_A 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN------EQILQEALWALSNIASGGNEQIQAVIDAG 138 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC------HHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC------HHHHHHHHHHHHHhhcCCchHHHHHHHCC
Confidence 56688999999999999874221 111 237888999998876 789999999999998754211 00 012
Q ss_pred hHHHHhhccCccc-cchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHH
Q 003135 336 LLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMA 410 (845)
Q Consensus 336 llq~Ll~~l~~e~-~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~ 410 (845)
.+..|+..|.... .--.....+|..+.....+..... +-...+..+.+++..+ + +.+.+....+|+.+.
T Consensus 139 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~---~~~~~i~~L~~ll~~~-~--~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 139 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV---IDAGALPALVQLLSSP-N--EQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH---HHTTCHHHHHHGGGCS-S--HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH---HHCCCHHHHHHHHCCC-C--HHHHHHHHHHHHHHh
Confidence 4556666554433 012223444444444322221110 1123344444544443 2 355555555555554
No 41
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=80.16 E-value=0.43 Score=46.87 Aligned_cols=94 Identities=20% Similarity=0.192 Sum_probs=63.8
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhcccc----ceeeeehhhhHhhhhhhHhhhhhcccccc----hhhHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLP----LYSVSVCLPYLVASANWILGELASCLPED----ISADVY 292 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP----~l~~~s~~p~LrarA~~~l~~f~~~l~~~----~l~~i~ 292 (845)
+...+..|+.+++.++..- ......++..-++| .++ ++.+-+|..|+|.++.++..-+.. .-..++
T Consensus 67 ~~~v~~~a~~~L~~l~~~~----~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 140 (210)
T 4db6_A 67 NEQILQEALWALSNIASGG----NEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 140 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSC----HHHHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHhcCC----cHHHHHHHHCCCHHHHHHHHc--CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcH
Confidence 3566888899998876211 11112222222333 334 567899999999999998642211 123578
Q ss_pred HHHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 293 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 293 ~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
+.+++.|.+++ .-||..|+.||.++...
T Consensus 141 ~~L~~ll~~~~------~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 141 PALVQLLSSPN------EQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCSC------HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCC------HHHHHHHHHHHHHHHcC
Confidence 89999998776 78999999999999875
No 42
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=79.04 E-value=1.1 Score=44.81 Aligned_cols=93 Identities=19% Similarity=0.111 Sum_probs=62.0
Q ss_pred hhhhHHHHHHhhchHHHHhhhchhhHHHHHhhcccc----ceeeeehhhhHhhhhhhHhhhhhccccc---c-hhhHHHH
Q 003135 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLP----LYSVSVCLPYLVASANWILGELASCLPE---D-ISADVYS 293 (845)
Q Consensus 222 ~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP----~l~~~s~~p~LrarA~~~l~~f~~~l~~---~-~l~~i~~ 293 (845)
...+..++.+++.++..- .+....++...++| .+. ++.+-+|..|+|.++.++..-+. . .-..+++
T Consensus 58 ~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 131 (252)
T 4hxt_A 58 SEVQKEAARALANIASGP----DEAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 131 (252)
T ss_dssp HHHHHHHHHHHHHHTTSC----HHHHHHHHHTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHcCC----hHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 456778888888776320 11112222222223 334 56789999999999999853211 1 1225788
Q ss_pred HHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 294 SLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 294 ~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
.+++.|.+++ ..||..|+.+|.++...
T Consensus 132 ~L~~~l~~~~------~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 132 VLVKLLTSTD------SEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHHTTCSC------HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCC------HHHHHHHHHHHHHHHcC
Confidence 8999998776 78999999999999874
No 43
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=78.87 E-value=4.4 Score=46.30 Aligned_cols=94 Identities=16% Similarity=0.238 Sum_probs=65.0
Q ss_pred HHHHHhhchHHHHhhhchhhHHHHHhhccccceee---eehhhhHhhhhhhHhhhhhcccccc----hhhHHHHHHHHHH
Q 003135 227 GVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV---SVCLPYLVASANWILGELASCLPED----ISADVYSSLLKAL 299 (845)
Q Consensus 227 gaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~---~s~~p~LrarA~~~l~~f~~~l~~~----~l~~i~~~ll~~L 299 (845)
.-+.++..+...+...+.+.++.++..-++|-|-. .+.+|-++..|+|+++.++..-+.. .-..+++.++.+|
T Consensus 92 ~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL 171 (529)
T 3tpo_A 92 SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 171 (529)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 34455555554444333444566777777775521 1567889999999999998753322 1224678899999
Q ss_pred hhcCCCCCcccceeeccchhhhhhhcc
Q 003135 300 QMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 300 ~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
.+++ .-||-.|+.||.++..+
T Consensus 172 ~s~~------~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 172 ASPH------AHISEQAVWALGNIAGA 192 (529)
T ss_dssp TCSC------HHHHHHHHHHHHHHHTT
T ss_pred cCCC------HHHHHHHHHHHHHHhcc
Confidence 8887 88999999999999864
No 44
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=78.37 E-value=2.5 Score=48.00 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=83.9
Q ss_pred HHHHHhhccccceee--eehh-hhHhhhhhhHhhhhhcccccc--h--hhHHHHHHHHHHhhcCCCCCcccceeeccchh
Q 003135 247 TANLVRSRVLPLYSV--SVCL-PYLVASANWILGELASCLPED--I--SADVYSSLLKALQMLDKGDTSCYPVRASAAGA 319 (845)
Q Consensus 247 ~e~fl~~~VlP~l~~--~s~~-p~LrarA~~~l~~f~~~l~~~--~--l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~A 319 (845)
...+...-++|.|-. .++. +-+|..|+|.++.++..-++. . -..+++.++..|.+++ ..||..|+.|
T Consensus 110 ~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~------~~v~~~a~~a 183 (528)
T 4b8j_A 110 IEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSS------DDVREQAVWA 183 (528)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC------HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCC------HHHHHHHHHH
Confidence 344555555554421 1344 899999999999998742211 1 1247888999998876 7899999999
Q ss_pred hhhhhccC-CCCCCch--hhHHHHhhccCccccchh---HHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCC
Q 003135 320 IVGLLEND-YMPPEWY--PLLQVIVGRIGYEDEENS---ILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSE 393 (845)
Q Consensus 320 l~~~l~~~-~l~p~i~--~llq~Ll~~l~~e~~e~d---~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~ 393 (845)
|.++.... .....+. ..+..|+..|.... +.. ....+|..+....... ...++..++..+.+++... +
T Consensus 184 L~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~-~~~v~~~a~~~L~~L~~~~~~~----~~~~~~~~l~~L~~lL~~~-~ 257 (528)
T 4b8j_A 184 LGNVAGDSPKCRDLVLANGALLPLLAQLNEHT-KLSMLRNATWTLSNFCRGKPQP----SFEQTRPALPALARLIHSN-D 257 (528)
T ss_dssp HHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTC-CHHHHHHHHHHHHHHHCSSSCC----CHHHHTTHHHHHHHHTTCC-C
T ss_pred HHHHhCCChhhHHHHHHCCcHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHHHHCCC-C
Confidence 99998643 1111111 24556666553322 222 2344444444432111 1233445555555555543 2
Q ss_pred ChHHHHHHHHHHHHHHH
Q 003135 394 PWPQVVERGFAALALMA 410 (845)
Q Consensus 394 ~~~~~~~~~f~~l~~~~ 410 (845)
+.+......+|+.+.
T Consensus 258 --~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 258 --EEVLTDACWALSYLS 272 (528)
T ss_dssp --HHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHH
Confidence 355555555555443
No 45
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=77.69 E-value=2.3 Score=49.94 Aligned_cols=126 Identities=12% Similarity=-0.020 Sum_probs=80.6
Q ss_pred hhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhc
Q 003135 223 KDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQML 302 (845)
Q Consensus 223 k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~ 302 (845)
..++.||.+++.++..-. ..+.. ....|++.+. .+.+.+|.+|..++..+++ +.++..++..++..+.+.
T Consensus 328 ~vr~~aL~~L~~i~~~~p----~~~~~-~~~~i~~~l~--d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~ 397 (618)
T 1w63_A 328 NIRYVALTSLLKTVQTDH----NAVQR-HRSTIVDCLK--DLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSC 397 (618)
T ss_dssp TTHHHHHHHHHHHHHHHH----HHHGG-GHHHHHHGGG--SSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHhhCH----HHHHH-HHHHHHHHcc--CCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhC
Confidence 457777777777664311 11111 1124556666 5678999999999988866 555778889999999876
Q ss_pred CCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhhccCcccc-chhHHHHHHHHHHhccc
Q 003135 303 DKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDE-ENSILFELLSSVVGAAN 366 (845)
Q Consensus 303 ~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~~l~~e~~-e~d~l~~~L~~iV~~~~ 366 (845)
+ .-+|..++.+|..+... ..|.....+..++..|..... -...+..++..++.++.
T Consensus 398 d------~e~r~~~v~~I~~la~k--~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p 454 (618)
T 1w63_A 398 E------PEFKADCASGIFLAAEK--YAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSV 454 (618)
T ss_dssp C------HHHHHHHHHHHHHHHHS--SCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC
T ss_pred C------HHHHHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCh
Confidence 6 67999999999998763 335555555555554433220 12235556666666554
No 46
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=76.83 E-value=5.4 Score=45.38 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=61.7
Q ss_pred HHHHhhchHHHHhhhchhhHHHHHhhccccceee---eehhhhHhhhhhhHhhhhhcccccch--h--hHHHHHHHHHHh
Q 003135 228 VLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV---SVCLPYLVASANWILGELASCLPEDI--S--ADVYSSLLKALQ 300 (845)
Q Consensus 228 aL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~---~s~~p~LrarA~~~l~~f~~~l~~~~--l--~~i~~~ll~~L~ 300 (845)
-+.+...+...+.+..++-++..+..-++|-|-. .+..|-+|..|+|.++.++..-++.. + ..+++.++.+|.
T Consensus 74 q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~ 153 (510)
T 3ul1_B 74 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153 (510)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 3444444444443323333455666666664421 15678899999999999987533221 1 236788999998
Q ss_pred hcCCCCCcccceeeccchhhhhhhcc
Q 003135 301 MLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 301 ~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
+++ .-||-.|+.||.++..+
T Consensus 154 s~~------~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 154 SPH------AHISEQAVWALGNIAGD 173 (510)
T ss_dssp CSC------HHHHHHHHHHHHHHHTT
T ss_pred CCC------HHHHHHHHHHHHHHHhC
Confidence 877 88999999999999864
No 47
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=76.57 E-value=0.94 Score=45.32 Aligned_cols=94 Identities=19% Similarity=0.108 Sum_probs=62.5
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhh----ccccceeeeehhhhHhhhhhhHhhhhhcccccc----hhhHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRS----RVLPLYSVSVCLPYLVASANWILGELASCLPED----ISADVY 292 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~----~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~----~l~~i~ 292 (845)
+...+..|+.+++.++..-. .....++.. .++..+. ++.+-+|..|+++++.++..-+.. .-..++
T Consensus 99 ~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 172 (252)
T 4hxt_A 99 DSEVQKEAARALANIASGPD----EAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPDEAIKAIVDAGGV 172 (252)
T ss_dssp SHHHHHHHHHHHHHHTTSCH----HHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHcCCH----HHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCH
Confidence 35667888888888773211 111122222 2223344 566889999999999997742211 123478
Q ss_pred HHHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 293 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 293 ~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
+.++..|.+++ ..||..|+.+|.++...
T Consensus 173 ~~L~~ll~~~~------~~v~~~a~~~L~~l~~~ 200 (252)
T 4hxt_A 173 EVLVKLLTSTD------SEVQKEAARALANIASG 200 (252)
T ss_dssp HHHHHHTTCSC------HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHCCCC------HHHHHHHHHHHHHHHcC
Confidence 88999998766 78999999999999863
No 48
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=75.94 E-value=1 Score=49.01 Aligned_cols=12 Identities=8% Similarity=-0.080 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhh
Q 003135 707 YASLMEAAVQLK 718 (845)
Q Consensus 707 ~~~L~~a~~~~~ 718 (845)
+..+..++..++
T Consensus 322 ~~~l~~~l~~~~ 333 (386)
T 2ca6_A 322 VDEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHhhhcC
Confidence 455555555554
No 49
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=75.37 E-value=4.2 Score=41.76 Aligned_cols=100 Identities=10% Similarity=-0.155 Sum_probs=64.0
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHh
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~ 300 (845)
++..+..+..++|.+...... ..+.+.+.| ...++ ++.+.+|..|++.++.+.. + ..++.++.+|.
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~-~~~~~~~~L----~~~l~--d~~~~vR~~a~~aL~~~~~---~----~~~~~L~~~l~ 169 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPI-YSPKIVEQS----QITAF--DKSTNVRRATAFAISVIND---K----ATIPLLINLLK 169 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGG-GHHHHHHHH----HHHTT--CSCHHHHHHHHHHHHTC----------CCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhccCCc-ccHHHHHHH----HHHhh--CCCHHHHHHHHHHHHhcCC---H----HHHHHHHHHHc
Confidence 466788888888887643211 111111222 22245 6789999999999998765 2 25677888888
Q ss_pred hcCCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhhccCc
Q 003135 301 MLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGY 346 (845)
Q Consensus 301 ~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~~l~~ 346 (845)
+++ ..||..|+.||..+- +.-+.++..|+..+.+
T Consensus 170 d~~------~~vr~~a~~aL~~~~------~~~~~~~~~L~~~l~d 203 (280)
T 1oyz_A 170 DPN------GDVRNWAAFAININK------YDNSDIRDCFVEMLQD 203 (280)
T ss_dssp CSS------HHHHHHHHHHHHHHT------CCCHHHHHHHHHHTTC
T ss_pred CCC------HHHHHHHHHHHHhhc------cCcHHHHHHHHHHhcC
Confidence 877 789999999998762 1224556666665544
No 50
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=75.20 E-value=1.1 Score=40.97 Aligned_cols=49 Identities=22% Similarity=0.217 Sum_probs=41.6
Q ss_pred ehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhh
Q 003135 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 324 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l 324 (845)
++.+.+|..|+|.++++.. ...++.++.+|.+++ .-||..|+.||..+-
T Consensus 53 d~~~~vR~~A~~aL~~~~~-------~~a~~~L~~~L~d~~------~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQD-------ERAVEPLIKLLEDDS------GFVRSGAARSLEQIG 101 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCS-------HHHHHHHHHHHHHCC------THHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCC------HHHHHHHHHHHHHhC
Confidence 5789999999999999864 246788888898887 889999999999874
No 51
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=74.23 E-value=0.92 Score=41.52 Aligned_cols=77 Identities=12% Similarity=-0.045 Sum_probs=55.0
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHh
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~ 300 (845)
++..+..|+.++|.+.+.- .+ ..|. ..+. ++.+.+|..|+|.++++.. ...++.++..|.
T Consensus 55 ~~~vR~~A~~aL~~~~~~~------a~-~~L~----~~L~--d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~ 114 (131)
T 1te4_A 55 DWRIRGAAAWIIGNFQDER------AV-EPLI----KLLE--DDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAE 114 (131)
T ss_dssp CHHHHHHHHHHHGGGCSHH------HH-HHHH----HHHH--HCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcCCHH------HH-HHHH----HHHc--CCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHh
Confidence 5778888999998875311 11 1111 1123 5788999999999999863 346778888887
Q ss_pred hcCCCCCcccceeeccchhhhhh
Q 003135 301 MLDKGDTSCYPVRASAAGAIVGL 323 (845)
Q Consensus 301 ~~~~~~~~~lpVrv~AA~Al~~~ 323 (845)
+++ .-||..|+.||..+
T Consensus 115 d~~------~~vr~~A~~aL~~i 131 (131)
T 1te4_A 115 TGT------GFARKVAVNYLETH 131 (131)
T ss_dssp SCC------THHHHHHHHHGGGC
T ss_pred CCC------HHHHHHHHHHHHhC
Confidence 766 78999999998753
No 52
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=74.14 E-value=3.5 Score=46.62 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=71.8
Q ss_pred ehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhh
Q 003135 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 342 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~ 342 (845)
...+=.+.-|+-+|.+|-..||. +-.+.+.+.+....|.+ .-||+.|.++|-.++.+ .++..+...|..
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~-l~~~Ai~a~lDLcEDed------~~IR~qaik~Lp~~ck~----~~i~kiaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPE-LADSAINAQLDLCEDED------VSIRRQAIKELPQFATG----ENLPRVADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGG-GHHHHHHHHHHHHTCSS------HHHHHHHHHHGGGGCCT----TCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhccc------HHHHHHHHHhhHHHhhh----hhhhhHHHHHHH
Confidence 35677888899999999888865 36788999999998887 88999999999999987 335556666666
Q ss_pred ccCccc-cchhHHHHHHHHHHhcc
Q 003135 343 RIGYED-EENSILFELLSSVVGAA 365 (845)
Q Consensus 343 ~l~~e~-~e~d~l~~~L~~iV~~~ 365 (845)
+|..++ .|.+.+.++|..++..-
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~D 131 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMD 131 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHhccchHHHHHHHHHHHHHHhcC
Confidence 565555 57888888888777654
No 53
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=74.03 E-value=3.3 Score=47.04 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=63.9
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceee--eehhhhHhhhhhhHhhhhhccc----ccchhhHHHHH
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCL----PEDISADVYSS 294 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l----~~~~l~~i~~~ 294 (845)
+...++.|+.+++.++..-. .....++...++|.+.. .++.+-+|..|+|+++.++..- .......+++.
T Consensus 186 ~~~vr~~A~~aL~~l~~~~~----~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 261 (530)
T 1wa5_B 186 SVEVKEQAIWALGNVAGDST----DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 261 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCH----HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHH
T ss_pred CHHHHHHHHHHHHHHhCCCc----cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHH
Confidence 45678889999998873211 11112222233332211 1356788899999999998642 22335678889
Q ss_pred HHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 295 LLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 295 ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
++..|.+++ ..||..|+.+|..+...
T Consensus 262 L~~lL~~~d------~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 262 LAKLIYSMD------TETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHTTCCC------HHHHHHHHHHHHHHHSS
T ss_pred HHHHHcCCC------HHHHHHHHHHHHHHhCC
Confidence 999998776 78999999999999864
No 54
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=73.72 E-value=3.7 Score=50.47 Aligned_cols=134 Identities=7% Similarity=0.003 Sum_probs=90.3
Q ss_pred hHhhhhhhHhhhhhcccc---cchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc-CCCCCCchhhHHHHhh
Q 003135 267 YLVASANWILGELASCLP---EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN-DYMPPEWYPLLQVIVG 342 (845)
Q Consensus 267 ~LrarA~~~l~~f~~~l~---~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~-~~l~p~i~~llq~Ll~ 342 (845)
.-|-.|+..+|.++...+ ...+.++++ ++..|..++ .+..||..|+.+|.++.+. ..-..+++++|..++.
T Consensus 479 ~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d----~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~ 553 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEK----LNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVR 553 (971)
T ss_dssp HHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTT----SCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccc----cCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445567788888877643 234556666 444554221 1378999999999998762 1123678888888888
Q ss_pred ccCccccchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHh
Q 003135 343 RIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 412 (845)
Q Consensus 343 ~l~~e~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~ 412 (845)
.| +.. =...-..++.++++..++.+.||.+.|++.|...+.+- ..+ ......++++++.++.+
T Consensus 554 ~l-~~~-v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~---~~~--~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 554 GL-NSS-MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG---RMK--NSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HH-HSS-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST---TSC--HHHHHHHHHHHHHHHHT
T ss_pred Hh-ChH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCC---CCC--hHHHHHHHHHHHHHHHh
Confidence 66 322 25566788889999999999999999999998887541 112 25667788888888764
No 55
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=73.43 E-value=1.3 Score=50.54 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=62.5
Q ss_pred hhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceee--eehhhhHhhhhhhHhhhhhcccccc----hhhHHHHHH
Q 003135 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPED----ISADVYSSL 295 (845)
Q Consensus 222 ~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~----~l~~i~~~l 295 (845)
...+..+++++|.++.. .......++...++|.|.. .++.+-+|..|||.++.++..-+.. .-..+++.+
T Consensus 288 ~~v~~~al~aL~nl~~~----~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~L 363 (510)
T 3ul1_B 288 LPIVTPALRAIGNIVTG----TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 363 (510)
T ss_dssp HHHHHHHHHHHHHHTTS----CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred hhhhhHHHHHHHHhhcC----CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHH
Confidence 45567777777766421 1112233344444444322 2677889999999999987642111 123477889
Q ss_pred HHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 296 LKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 296 l~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
+..|.+.+ .-||..||.||.++...
T Consensus 364 v~lL~~~~------~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 364 VGVLSKAD------FKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHSSC------HHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCC------HHHHHHHHHHHHHHHcc
Confidence 99998876 88999999999999864
No 56
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=72.73 E-value=1.4 Score=46.95 Aligned_cols=94 Identities=13% Similarity=0.038 Sum_probs=62.4
Q ss_pred hhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccc----eeeeehhhhHhhhhhhHhhhhhccccc--chh--hHHHH
Q 003135 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPL----YSVSVCLPYLVASANWILGELASCLPE--DIS--ADVYS 293 (845)
Q Consensus 222 ~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~----l~~~s~~p~LrarA~~~l~~f~~~l~~--~~l--~~i~~ 293 (845)
...+..|..++|.++.-- ...-..++..-++|- +++ ++.+-+|..|+|.++.+....++ +.+ ...++
T Consensus 96 ~~vr~~Aa~~Lg~ia~~n----~~~~~~vv~~g~l~~Ll~LL~~-~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~ 170 (296)
T 1xqr_A 96 AGLRWRAAQLIGTCSQNV----AAIQEQVLGLGALRKLLRLLDR-DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFS 170 (296)
T ss_dssp HHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHhCC----HHHHHHHHHCCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH
Confidence 467889999999887310 001112222222222 331 34578899999999999765322 112 35788
Q ss_pred HHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 294 SLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 294 ~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
.++.+|.+++ .-||..||.||..+...
T Consensus 171 ~L~~lL~~~d------~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 171 VLMRAMQQQV------QKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHHHHHSSC------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC------HHHHHHHHHHHHHHHhC
Confidence 9999998876 89999999999999874
No 57
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=72.67 E-value=0.97 Score=51.83 Aligned_cols=95 Identities=16% Similarity=0.215 Sum_probs=60.4
Q ss_pred hhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceee--eehhhhHhhhhhhHhhhhhcccccc----hhhHHHHHH
Q 003135 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPED----ISADVYSSL 295 (845)
Q Consensus 222 ~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~----~l~~i~~~l 295 (845)
...+..+++++|.++.. .......++...++|.|.. .++.+-+|..|||.++..+..-+.. .-..+++.+
T Consensus 307 ~~v~~~a~~aL~nl~~~----~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~L 382 (529)
T 3tpo_A 307 LPIVTPALRAIGNIVTG----TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFL 382 (529)
T ss_dssp HHHHHHHHHHHHHHTTS----CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHH
T ss_pred hhHHHHHHHHHHHHHcc----chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHH
Confidence 34556666666665421 1111122333333443321 1678899999999999987642211 123478888
Q ss_pred HHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 296 LKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 296 l~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
+..|.+++ ..||-.||.||.++...
T Consensus 383 v~lL~~~~------~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 383 VGVLSKAD------FKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHSSC------HHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCC------HHHHHHHHHHHHHHHcC
Confidence 99998876 88999999999999864
No 58
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=71.05 E-value=15 Score=45.90 Aligned_cols=139 Identities=12% Similarity=0.132 Sum_probs=87.8
Q ss_pred hhhHhhhhhhHhhhhhccccc----chhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhh---hccCCCCCCchhhH
Q 003135 265 LPYLVASANWILGELASCLPE----DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL---LENDYMPPEWYPLL 337 (845)
Q Consensus 265 ~p~LrarA~~~l~~f~~~l~~----~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~---l~~~~l~p~i~~ll 337 (845)
+.--+-.+||.+|..+.++.+ ..+.++++.+++....+. |..+-..|+....-.+.++ +... ..++.+++
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~-~kd~k~~vas~i~~vlgrY~~wl~~h--~~~L~~vl 568 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKR-GKDNKAIIASNIMYIVGQYPRFLRAH--WKFLKTVV 568 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhccccccc-ccchhHHHHHHHHHHHhhhHHHHHhC--HHHHHHHH
Confidence 345566889999999888653 357777777776664431 0001133433222344443 3321 34678888
Q ss_pred HHHhhccCccccc-hhHHHHHHHHHHhcccccc--------ccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHH
Q 003135 338 QVIVGRIGYEDEE-NSILFELLSSVVGAANENV--------ADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALAL 408 (845)
Q Consensus 338 q~Ll~~l~~e~~e-~d~l~~~L~~iV~~~~e~l--------~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~ 408 (845)
+.|+..+.....+ -+.-..++..+.+..+.++ .||..+|.+.+.+++.++ . ++-.+.+++++|.
T Consensus 569 ~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l-----~--~~~~~~lyeav~~ 641 (1073)
T 3gjx_A 569 NKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL-----Q--PQQVHTFYEAVGY 641 (1073)
T ss_dssp HHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC-----C--HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc-----C--HHHHHHHHHHHHH
Confidence 9998855432211 3445567777777777654 679999999999887665 1 3667778999998
Q ss_pred HHHhh
Q 003135 409 MAQSW 413 (845)
Q Consensus 409 ~~~~~ 413 (845)
+....
T Consensus 642 vi~~~ 646 (1073)
T 3gjx_A 642 MIGAQ 646 (1073)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 88654
No 59
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=63.89 E-value=7.1 Score=37.78 Aligned_cols=78 Identities=22% Similarity=0.111 Sum_probs=52.7
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHh
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~ 300 (845)
++..+..++.++|.+.+ ...+ +.|.. .+. ++.|.+|..|++.++++.. + ..++.++.+|.
T Consensus 58 ~~~vr~~a~~~L~~~~~------~~~~-~~L~~----~l~--d~~~~vr~~a~~aL~~~~~---~----~~~~~L~~~l~ 117 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGD------ERAV-EPLIK----ALK--DEDGWVRQSAAVALGQIGD---E----RAVEPLIKALK 117 (201)
T ss_dssp SHHHHHHHHHHHHHHCC------GGGH-HHHHH----HTT--CSSHHHHHHHHHHHHHHCC---G----GGHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhCC------HHHH-HHHHH----HHc--CCCHHHHHHHHHHHHHhCc---H----HHHHHHHHHHc
Confidence 35566777777765431 1111 22222 234 5788999999999998764 2 35677788887
Q ss_pred hcCCCCCcccceeeccchhhhhhh
Q 003135 301 MLDKGDTSCYPVRASAAGAIVGLL 324 (845)
Q Consensus 301 ~~~~~~~~~lpVrv~AA~Al~~~l 324 (845)
+++ ..||..|+.+|..+-
T Consensus 118 d~~------~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 118 DED------WFVRIAAAFALGEIG 135 (201)
T ss_dssp CSS------HHHHHHHHHHHHHHT
T ss_pred CCC------HHHHHHHHHHHHHhC
Confidence 776 789999999999874
No 60
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=63.61 E-value=2.6 Score=46.17 Aligned_cols=66 Identities=15% Similarity=0.018 Sum_probs=54.8
Q ss_pred HHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 250 LVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 250 fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
+..+.+.-+++ ++.|++|+-|..+++..+. ++++..+.+.+-++|.|.+ .-||-.|+.|...++..
T Consensus 104 Lv~Nsl~kDl~--~~N~~iR~lALRtL~~I~~---~~m~~~l~~~lk~~L~d~~------pyVRk~A~l~~~kL~~~ 169 (355)
T 3tjz_B 104 IVTSSLTKDMT--GKEDSYRGPAVRALCQITD---STMLQAIERYMKQAIVDKV------PSVSSSALVSSLHLLKC 169 (355)
T ss_dssp GGHHHHHHHHH--SSCHHHHHHHHHHHHHHCC---TTTHHHHHHHHHHHHTCSS------HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhcC--CCcHhHHHHHHHHHhcCCC---HHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHhcc
Confidence 44455556677 7899999999999987754 7788899999999999998 88999999999988764
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=61.36 E-value=2.9 Score=51.65 Aligned_cols=148 Identities=9% Similarity=0.112 Sum_probs=94.2
Q ss_pred HHHHHHhhchHHHHhhhchhhHHHHHhhccccceee--eehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcC
Q 003135 226 FGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLD 303 (845)
Q Consensus 226 dgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~--~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~ 303 (845)
|+|+.+++.|+..... ..+ +|.++... +|.+-. .....-+|..|-..+..+...+++..+..+++.++.+|....
T Consensus 70 ~~a~~~~~~~~~~~~~-~~~-~e~~~~~~-~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 146 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNL-SPS-VEPYIVQL-VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETN 146 (986)
T ss_dssp HHHHHHHHHHTCTTTC-CTT-THHHHHTT-HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCC-CCC-cccchHHH-HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc
Confidence 9999999998855432 222 37777643 343321 134457888888888888888888778999999999997765
Q ss_pred CCCCcccceeeccchhhhhhhccC--CCCCCchhhHHHHhhccCccccc-hhHHHHHHHHHHhcc-ccccccchhHHHHH
Q 003135 304 KGDTSCYPVRASAAGAIVGLLEND--YMPPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAA-NENVADHIPYIVSS 379 (845)
Q Consensus 304 ~~~~~~lpVrv~AA~Al~~~l~~~--~l~p~i~~llq~Ll~~l~~e~~e-~d~l~~~L~~iV~~~-~e~l~p~a~~l~~~ 379 (845)
+ -..++-|...|..+.... .+.-.++.++-.+-.++-....| ...-.++|..++... ..+|.||.+.|+..
T Consensus 147 k-----w~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~ 221 (986)
T 2iw3_A 147 K-----WQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQC 221 (986)
T ss_dssp C-----HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHH
T ss_pred c-----hHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHH
Confidence 3 789999999999998632 22222233322222222222212 444556666666533 34588887777776
Q ss_pred HH
Q 003135 380 LV 381 (845)
Q Consensus 380 L~ 381 (845)
+.
T Consensus 222 ~~ 223 (986)
T 2iw3_A 222 IA 223 (986)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.19 E-value=6 Score=38.65 Aligned_cols=78 Identities=22% Similarity=0.111 Sum_probs=52.9
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHh
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~ 300 (845)
++..+..++.++|.+.+ ...+ ..|.. .+. ++.+.+|..|++.++++.. + ..++.++.+|.
T Consensus 63 ~~~vr~~a~~aL~~~~~------~~~~-~~L~~----~l~--~~~~~vr~~a~~aL~~~~~---~----~~~~~L~~~l~ 122 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGD------ERAV-EPLIK----ALK--DEDGWVRQSAAVALGQIGD---E----RAVEPLIKALK 122 (211)
T ss_dssp CHHHHHHHHHHHHHHCC------GGGH-HHHHH----HTT--CSSHHHHHHHHHHHHHHCC---G----GGHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhCC------HHHH-HHHHH----HHc--CCCHHHHHHHHHHHHHhCc---H----HHHHHHHHHHh
Confidence 35566777777775531 1111 22222 234 5778999999999998864 2 35677888887
Q ss_pred hcCCCCCcccceeeccchhhhhhh
Q 003135 301 MLDKGDTSCYPVRASAAGAIVGLL 324 (845)
Q Consensus 301 ~~~~~~~~~lpVrv~AA~Al~~~l 324 (845)
+++ .-||..|+.||..+-
T Consensus 123 d~~------~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 123 DED------WFVRIAAAFALGEIG 140 (211)
T ss_dssp CSS------HHHHHHHHHHHHHHC
T ss_pred CCC------HHHHHHHHHHHHHcC
Confidence 776 789999999999873
No 63
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=55.96 E-value=7.5 Score=37.95 Aligned_cols=79 Identities=22% Similarity=0.103 Sum_probs=55.2
Q ss_pred hhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHh
Q 003135 221 IQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQ 300 (845)
Q Consensus 221 ~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~ 300 (845)
++..+..++.++|.+.. ...+ ..|. ..+. ++.+.+|..|++.++++.. + ..++.++.+|.
T Consensus 32 ~~~vR~~A~~~L~~~~~------~~~~-~~L~----~~l~--~~~~~vr~~a~~aL~~~~~---~----~~~~~L~~~l~ 91 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD------ERAV-EPLI----KALK--DEDAWVRRAAADALGQIGD---E----RAVEPLIKALK 91 (211)
T ss_dssp SHHHHHHHHHHHHHHCC------GGGH-HHHH----HHTT--CSCHHHHHHHHHHHHHHCC---G----GGHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCC------ccHH-HHHH----HHHc--CCCHHHHHHHHHHHHhhCC---H----HHHHHHHHHHc
Confidence 46677777777775432 1111 2222 2234 5688999999999999864 2 35678888888
Q ss_pred hcCCCCCcccceeeccchhhhhhhc
Q 003135 301 MLDKGDTSCYPVRASAAGAIVGLLE 325 (845)
Q Consensus 301 ~~~~~~~~~lpVrv~AA~Al~~~l~ 325 (845)
+++ .-||..|+.+|..+-.
T Consensus 92 ~~~------~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 92 DED------GWVRQSAAVALGQIGD 110 (211)
T ss_dssp CSS------HHHHHHHHHHHHHHCC
T ss_pred CCC------HHHHHHHHHHHHHhCc
Confidence 877 7899999999998743
No 64
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.99 E-value=9.1 Score=36.99 Aligned_cols=48 Identities=29% Similarity=0.306 Sum_probs=26.1
Q ss_pred ehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhh
Q 003135 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 323 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~ 323 (845)
++.+.+|..|++.++++.. ...++.++.+|.+++ ..||..|+.+|..+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~~------~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDED------AWVRRAAADALGQI 72 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSS------HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCCC------HHHHHHHHHHHHhh
Confidence 4556666666666665543 123455555555444 55666666666554
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=54.81 E-value=2.1 Score=50.37 Aligned_cols=105 Identities=14% Similarity=0.066 Sum_probs=65.2
Q ss_pred hhhhHHHHHHhhchHHHHhhhchhhHHHHHhhccccceeeeehhhhHhhhhhhHhhhhhcccccchhh--HHHHHHHHHH
Q 003135 222 QKDYFGVLMAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISA--DVYSSLLKAL 299 (845)
Q Consensus 222 ~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~VlP~l~~~s~~p~LrarA~~~l~~f~~~l~~~~l~--~i~~~ll~~L 299 (845)
...+-.||+.+|++.. .++ .+-+...|...+.+.+++||+|.+|+-.+.++... .++.+. ..++.+.++|
T Consensus 125 ~~ir~lALr~L~~i~~------~e~-~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p~~~~~~~~~~~l~~lL 196 (621)
T 2vgl_A 125 PTFMGLALHCIANVGS------REM-AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-SPDLVPMGDWTSRVVHLL 196 (621)
T ss_dssp HHHHHHHHHHHHHHCC------HHH-HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CGGGCCCCSCHHHHHHHT
T ss_pred HHHHHHHHHHhhccCC------HHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-ChhhcCchhHHHHHHHHh
Confidence 4445566666665532 111 12222333333410168999999999999998773 344455 6888888899
Q ss_pred hhcCCCCCcccceeeccchhhhhhhccC--CCCCCchhhHHHH
Q 003135 300 QMLDKGDTSCYPVRASAAGAIVGLLEND--YMPPEWYPLLQVI 340 (845)
Q Consensus 300 ~~~~~~~~~~lpVrv~AA~Al~~~l~~~--~l~p~i~~llq~L 340 (845)
.|++ .-|+..|..++..+..+. .+.+.++.+++.|
T Consensus 197 ~d~d------~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L 233 (621)
T 2vgl_A 197 NDQH------LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRL 233 (621)
T ss_dssp TCSC------HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHH
T ss_pred CCCC------ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 8776 778888888888887643 3344444444433
No 66
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=45.97 E-value=12 Score=38.19 Aligned_cols=50 Identities=12% Similarity=-0.075 Sum_probs=40.6
Q ss_pred ehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc
Q 003135 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 325 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~ 325 (845)
++.+..|..|++.+++... ..+++.++.+|.+++ ..||..|+.+|..+-.
T Consensus 34 ~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~d~~------~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKN------YIRRDIGAFILGQIKI 83 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSS------HHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHccCC-------chHHHHHHHHHcCCC------HHHHHHHHHHHHHhcc
Confidence 5678899999999998863 346788888898876 7899999999987643
No 67
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=43.74 E-value=11 Score=40.88 Aligned_cols=11 Identities=0% Similarity=0.048 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 003135 704 QDCYASLMEAA 714 (845)
Q Consensus 704 ~~~~~~L~~a~ 714 (845)
...|....+.+
T Consensus 264 ~eey~~F~k~~ 274 (335)
T 4fp9_B 264 VEEFQVFKKLL 274 (335)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33455544444
No 68
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=40.69 E-value=7.8 Score=40.27 Aligned_cols=166 Identities=11% Similarity=0.136 Sum_probs=96.9
Q ss_pred eeeccccccCCCCCCchhhhhhhhhhHHHHHHhhchHHHHhhhchhhHHHHHhhc----cccceee---eehhhhHhhhh
Q 003135 200 LVLPFLSRFPIPCDANASHSRIQKDYFGVLMAYGGLQEFLREQKSEFTANLVRSR----VLPLYSV---SVCLPYLVASA 272 (845)
Q Consensus 200 ~v~~~L~~y~~~~~~~~~~~~~~k~kdgaL~~ig~la~~l~~~~~~~~e~fl~~~----VlP~l~~---~s~~p~LrarA 272 (845)
+++++++-|+.-+.++- +.....+.-.||.++-++|.- ++--..|+..| +.|.+.. +.++-+||-.+
T Consensus 49 LLQEIisiYp~lspp~L-t~~~SnRVcnaLaLlQcvAsh-----petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLts 122 (268)
T 2fv2_A 49 LLQEIVNIYPSINPPTL-TAHQSNRVCNALALLQCVASH-----PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTS 122 (268)
T ss_dssp HHHHHHHTGGGBTTBCC-CHHHHHHHHHHHHHHHHHHHC-----TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCccc-CHHHHhHHHHHHHHHHHHHcC-----cchhhHHHHccchHHhhhhhccccCCCcchhhhhhH
Confidence 46677777765432221 122344556667777666632 21223455544 4566653 24667999988
Q ss_pred hhHhhhhhcccccc-----hhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhhccCcc
Q 003135 273 NWILGELASCLPED-----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYE 347 (845)
Q Consensus 273 ~~~l~~f~~~l~~~-----~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~~l~~e 347 (845)
.-++|...+.=+++ +-.++++..++.|...+ =.-|+-|+--++.++.++. -|+-+. .+.
T Consensus 123 LGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gs------elSKtvAtfIlqKIL~dd~-------GL~YiC---~t~ 186 (268)
T 2fv2_A 123 LGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGS------ELSKTVATFILQKILLDDT-------GLAYIC---QTY 186 (268)
T ss_dssp HHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHSHH-------HHHHHT---SSH
T ss_pred HHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhcc------HHHHHHHHHHHHHHhccch-------hHHHHH---ccH
Confidence 88888887642222 22456788888887665 4556666666666654431 011111 111
Q ss_pred ccchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCC
Q 003135 348 DEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPS 391 (845)
Q Consensus 348 ~~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~ 391 (845)
+ -.-.+..+|..+|....++ ..+.|..+++.+++|+..++
T Consensus 187 e-RF~av~~vL~~mV~~l~~~---ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 187 E-RFSHVAMILGKMVLQLSKE---PSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp H-HHHHHHHHHHHHHHHTTTS---CCHHHHHHHHHHHHHHTTSH
T ss_pred H-HHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHhcCH
Confidence 1 2445777888888765544 35699999999999986653
No 69
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=38.87 E-value=35 Score=39.64 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=47.4
Q ss_pred ehhhhHhhhhhhHhhhhhccc-ccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 263 VCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l-~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
++.+-+|..|+|+++.++... +......+++.+++.|.+++ .-||..|+.+|.++..+
T Consensus 235 ~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d------~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 235 DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD------INVVTCAAGILSNLTCN 293 (644)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCC------HHHHHHHHHHHHHHHcC
Confidence 456778889999999998763 34456788999999998766 77999999999999775
No 70
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=37.84 E-value=44 Score=39.18 Aligned_cols=21 Identities=19% Similarity=0.532 Sum_probs=13.5
Q ss_pred CCchhHHHHhhhccccchhhh
Q 003135 620 SSLWKPVVLAISSCYLCYPAV 640 (845)
Q Consensus 620 ~~~~~~~i~vi~~~~~~~p~~ 640 (845)
..+...++..++..+...|..
T Consensus 170 ~~yl~~vl~mLV~~F~~~~~~ 190 (649)
T 3tj1_A 170 PKWWQDVSMILVSCFILPIKQ 190 (649)
T ss_dssp GGGHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHHHHHHHHhccCCCcc
Confidence 356666777777777665443
No 71
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=36.13 E-value=83 Score=33.63 Aligned_cols=61 Identities=13% Similarity=0.242 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHh
Q 003135 352 SILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 412 (845)
Q Consensus 352 d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~ 412 (845)
..+..++.++|.+.++.+.|..+.|...+-..-+..+.++-+.+|.+-..-|+-|.+++..
T Consensus 92 peVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~ 152 (321)
T 1w9c_A 92 PEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSH 152 (321)
T ss_dssp THHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 4488899999999999999999999999999999999998888898887788888888763
No 72
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=33.56 E-value=3.8 Score=48.71 Aligned_cols=58 Identities=10% Similarity=-0.028 Sum_probs=41.9
Q ss_pred ehhhhHhhhhhhHhhhhhcccc-c--chhhHHHHHH-HHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 263 VCLPYLVASANWILGELASCLP-E--DISADVYSSL-LKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~-~--~~l~~i~~~l-l~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
|+.+=.|.-||+.++.+..--. . -.-..++..+ ..+|.|++ .-||..|+.||+++...
T Consensus 45 S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~------~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 45 SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNN------IDSRAAGWEILKVLAQE 106 (684)
T ss_dssp SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSC------HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCC------HHHHHHHHHHHHHHHhh
Confidence 6888999999999999976311 1 1122344444 45677777 88999999999999764
No 73
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=33.47 E-value=21 Score=43.23 Aligned_cols=137 Identities=14% Similarity=0.140 Sum_probs=76.4
Q ss_pred ehhhhHhhhhhhHhhhhhcccc--cchh--hHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc-cC-----CCC-C
Q 003135 263 VCLPYLVASANWILGELASCLP--EDIS--ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE-ND-----YMP-P 331 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~--~~~l--~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~-~~-----~l~-p 331 (845)
++++.+|..|+|+++.++..-+ .... ...++.++..+..++ ..||..||.||.++.. ++ .+. .
T Consensus 634 s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d------~~vq~~Aa~ALanLt~~s~~~~~~ii~~~ 707 (810)
T 3now_A 634 EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDED------EETATACAGALAIITSVSVKCCEKILAIA 707 (810)
T ss_dssp SCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSS------HHHHHHHHHHHHHHHHHCHHHHHHHHTST
T ss_pred CCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCC------HHHHHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 5678899999999999876421 1111 246788888887765 8899999999999987 22 233 3
Q ss_pred CchhhHHHHhhccCccccc-hhHHHHHHHHHHhccccccccchhHHHH-HHHHHHHhhcCCCCCChHHHHHHHHHHHHHH
Q 003135 332 EWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIVS-SLVAAISKHMHPSSEPWPQVVERGFAALALM 409 (845)
Q Consensus 332 ~i~~llq~Ll~~l~~e~~e-~d~l~~~L~~iV~~~~e~l~p~a~~l~~-~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~ 409 (845)
.+.+.|-.|+. +...+ -..-..++..++.. +.+. +..+++ ..+..+.+++......-+++.+-..++|..+
T Consensus 708 g~I~~Lv~LL~---s~d~~vq~~A~~aL~NL~~~-s~e~---~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 708 SWLDILHTLIA---NPSPAVQHRGIVIILNMINA-GEEI---AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp THHHHHHHHHT---CSSHHHHHHHHHHHHHHHTT-CHHH---HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC---CCCHHHHHHHHHHHHHHHhC-CHHH---HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence 44444444544 32201 22233444444442 2211 112211 2234455555433111247777767777666
Q ss_pred HHh
Q 003135 410 AQS 412 (845)
Q Consensus 410 ~~~ 412 (845)
.+.
T Consensus 781 l~~ 783 (810)
T 3now_A 781 ERY 783 (810)
T ss_dssp HHH
T ss_pred HhC
Confidence 553
No 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=33.20 E-value=22 Score=43.94 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=88.3
Q ss_pred hhhhhHhhhhhcccc-----cchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCCCC-chhhHHHHhhc
Q 003135 270 ASANWILGELASCLP-----EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPE-WYPLLQVIVGR 343 (845)
Q Consensus 270 arA~~~l~~f~~~l~-----~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~-i~~llq~Ll~~ 343 (845)
..||..++..+..+. +..+..+++.++.++.|.. -+||-.|..|+..++.. +.|+ +..++-.|+..
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~------~~v~~aa~~~~~~~~~~--~~~~a~~~~~~~~~~~ 141 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD------KEIQSVASETLISIVNA--VNPVAIKALLPHLTNA 141 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS------HHHHHHHHHHHHHHHHH--SCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc------hHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHH
Confidence 677877777775531 2335566788888888776 78999999999988873 3332 23344444444
Q ss_pred cCcc-c-cchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhhhh
Q 003135 344 IGYE-D-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENF 416 (845)
Q Consensus 344 l~~e-~-~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 416 (845)
|.+. . .....-.++|.++++...+++.-..++|+..+.+..+-. - |.+-...-++|..+..+.+|.
T Consensus 142 ~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~----k---~~v~~~~~~~~~~~~~~~~n~ 209 (986)
T 2iw3_A 142 IVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDT----K---KEVKAAATAAMTKATETVDNK 209 (986)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCS----S---HHHHHHHHHHHHHHGGGCCCT
T ss_pred hccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccC----c---HHHHHHHHHHHHHHHhcCCCc
Confidence 4333 2 456778899999999888888877788888877775332 1 355555666666666666543
No 75
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=32.82 E-value=41 Score=41.67 Aligned_cols=82 Identities=11% Similarity=0.175 Sum_probs=58.0
Q ss_pred CCCchhhHHHHhhccCccc--cchhHHHHHHHHHHhccccccccchhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHH
Q 003135 330 PPEWYPLLQVIVGRIGYED--EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALA 407 (845)
Q Consensus 330 ~p~i~~llq~Ll~~l~~e~--~e~d~l~~~L~~iV~~~~e~l~p~a~~l~~~L~~~f~k~~~~~~~~~~~~~~~~f~~l~ 407 (845)
.|+++++++.+++...+.. .....+..++..+|..+++.+.|+.+.+.+.+.+..+..+.+..+..|.+.+..|+-|+
T Consensus 750 ~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~ 829 (1049)
T 3m1i_C 750 KVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLK 829 (1049)
T ss_dssp HHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHH
Confidence 3556666666666332211 01245888899999999999999999999999988888776655555777777777777
Q ss_pred HHHH
Q 003135 408 LMAQ 411 (845)
Q Consensus 408 ~~~~ 411 (845)
.+.+
T Consensus 830 ~i~~ 833 (1049)
T 3m1i_C 830 VINE 833 (1049)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 76
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=29.13 E-value=11 Score=41.94 Aligned_cols=7 Identities=14% Similarity=0.040 Sum_probs=3.9
Q ss_pred CCeehhhh
Q 003135 651 GGFALWGS 658 (845)
Q Consensus 651 ~~f~~W~~ 658 (845)
.||+ ||+
T Consensus 311 SFFn-fFs 317 (417)
T 2ayu_A 311 SFFN-FFD 317 (417)
T ss_dssp CGGG-GGS
T ss_pred Ccee-ecC
Confidence 4554 565
No 77
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=26.12 E-value=22 Score=39.64 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=47.3
Q ss_pred ehhhhHhhhhhhHhhhhhccc-ccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 263 VCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l-~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
++.+-++..|+|+++.++... +......+++.+++.|.+++ ..||..|+.+|.++..+
T Consensus 238 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~------~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 238 DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD------INVVTCAAGILSNLTCN 296 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHTTT
T ss_pred CCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCC------HHHHHHHHHHHHHHhcC
Confidence 456788999999999998863 33446788999999998766 78999999999999764
No 78
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=22.24 E-value=17 Score=40.42 Aligned_cols=7 Identities=0% Similarity=-0.235 Sum_probs=2.5
Q ss_pred ccccccc
Q 003135 365 ANENVAD 371 (845)
Q Consensus 365 ~~e~l~p 371 (845)
|.....|
T Consensus 124 y~~~~~P 130 (417)
T 2ayu_A 124 FLQKYKP 130 (417)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 79
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=21.52 E-value=37 Score=40.72 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=46.9
Q ss_pred ehhhhHhhhhhhHhhhhhccc-ccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhcc
Q 003135 263 VCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 326 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l-~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~ 326 (845)
++.+-++..|+|+++.++... +......+++.+++.|.+++ .-||..|+.||.++...
T Consensus 371 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d------~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 371 DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD------INVVTCAAGILSNLTCN 429 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHTSS
T ss_pred CCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCC------HHHHHHHHHHHHHHHhC
Confidence 456678889999999998763 33346788999999998766 78999999999999765
No 80
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=21.42 E-value=48 Score=38.42 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhccCCCCCCchhhHHHHhhccCccc---cchhHHHHHHHHHHhc
Q 003135 288 SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED---EENSILFELLSSVVGA 364 (845)
Q Consensus 288 l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~~~~l~p~i~~llq~Ll~~l~~e~---~e~d~l~~~L~~iV~~ 364 (845)
+..+++.++.+|.|+++ =||..||.+|..+. .+..+..++..+-.+|.+.+ +..-.+|.+|..++..
T Consensus 297 Ld~Vv~aVL~GL~D~DD------DVRAVAAetLiPIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~ 366 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPDE------DIKLLSAELLCHFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRE 366 (800)
T ss_dssp HHHHHHHHHHHTTCSSH------HHHHHHHHHHTTSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCccc------HHHHHHHHHhhhhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcC
Confidence 78899999999998873 49999999999887 34456777777777666544 2345577777776654
Q ss_pred ccc---------ccccchhHHHHHHHHHHHhhcCCCC
Q 003135 365 ANE---------NVADHIPYIVSSLVAAISKHMHPSS 392 (845)
Q Consensus 365 ~~e---------~l~p~a~~l~~~L~~~f~k~~~~~~ 392 (845)
-.. .+-||.-.-++.+-.+.++.+..-.
T Consensus 367 p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 367 NPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp CTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred CcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 332 1556666655566666666555544
No 81
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=20.34 E-value=89 Score=38.43 Aligned_cols=99 Identities=14% Similarity=0.051 Sum_probs=68.8
Q ss_pred ehhhhHhhhhhhHhhhhhcccccchhhHHHHHHHHHHhhcCCCCCcccceeeccchhhhhhhc--cCCCCCCchhhHHHH
Q 003135 263 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE--NDYMPPEWYPLLQVI 340 (845)
Q Consensus 263 s~~p~LrarA~~~l~~f~~~l~~~~l~~i~~~ll~~L~~~~~~~~~~lpVrv~AA~Al~~~l~--~~~l~p~i~~llq~L 340 (845)
+..|.+|..|++.+|..+.--+ ...++..+...+.|++ .-||-.|+.||..+.. ++...|.+..++..|
T Consensus 623 ~~d~~VR~gAalALGli~aGn~---~~~aid~L~~L~~D~d------~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L 693 (963)
T 4ady_A 623 SHNAHVRCGTAFALGIACAGKG---LQSAIDVLDPLTKDPV------DFVRQAAMIALSMILIQQTEKLNPQVADINKNF 693 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTSSSC---CHHHHHHHHHHHTCSS------HHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCC---cHHHHHHHHHHccCCC------HHHHHHHHHHHHHHhcCCccccchHHHHHHHHH
Confidence 5678999999999998764333 2457776777777776 7799999999998875 457789999999999
Q ss_pred hhccCccccchhHH--HHHHHHHHhccccccc
Q 003135 341 VGRIGYEDEENSIL--FELLSSVVGAANENVA 370 (845)
Q Consensus 341 l~~l~~e~~e~d~l--~~~L~~iV~~~~e~l~ 370 (845)
.+.+.+...+.... ...=+-++..++..++
T Consensus 694 ~~~~~dk~~d~~~~fga~iAqGll~aG~~n~t 725 (963)
T 4ady_A 694 LSVITNKHQEGLAKFGACVAQGIMNAGGRNVT 725 (963)
T ss_dssp HHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEE
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhcCCCceE
Confidence 88665422122222 2233346666655543
Done!