BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003136
(845 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|F Chain F, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
Length = 1204
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 153/736 (20%), Positives = 313/736 (42%), Gaps = 90/736 (12%)
Query: 161 ESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEG--LLRQLLSLKWTEPPLVVALG 218
E+M LE+V++ +F N+ E+ ++ +G LL+ +L+ +P ++ +
Sbjct: 504 EAMTLFLESVITQMFRTLNR-----EEIPVN-----DGIELLQMVLNFDTKDPLILSCVL 553
Query: 219 HYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVF----KDPSTNSARHARLQICTSFIR 274
+ AL PF+ Y P+ + V SKLF +S+ F K P T + R+ R C+S I+
Sbjct: 554 TNVSALFPFVTYRPEFLPQVFSKLF---SSVTFETVEESKAPRTRAVRNVRRHACSSIIK 610
Query: 275 IAKTSDKSILPHMKDIADTMA-YLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEV-LA 332
+ + + +LP+ + + + L E L + E L EA +++++ ++Q+V L
Sbjct: 611 MCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLE 670
Query: 333 WLLEPLSQQWMQLEWQ--------------------NNYLSEPLGLVRLCSDTSFMWSLF 372
L+ P++ W+ + + L +P GL R + ++
Sbjct: 671 ELMAPVASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNR----ARMSFCVY 726
Query: 373 HTVTFFERALKRSGIRKANLN---LQSSSAENSAVMHPMASHLSWMXXXXXXXXRAIHSI 429
+ +R + + +A + +S+ N +P + + R +++
Sbjct: 727 SILGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALIRTHNTL 786
Query: 430 WSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNE 489
++P + + A+ M DAE+ ++LG P + D T E
Sbjct: 787 YAPEMLAKMAEPFTKALDMLDAEKSAILGLPQP-----LLELNDSPVFKTVLE------- 834
Query: 490 SDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLD-SGSVVVALMENIQSMEFRHIRQLVH 547
++ + + ++ +++LG + ++ F+ D + ++ + N+ ++ +R ++
Sbjct: 835 -RMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLR 893
Query: 548 SVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE--VAGSDLKV------ 599
+ +V FCP + +E + +L PLF + LS W + + G D
Sbjct: 894 VFVKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPES 953
Query: 600 -EVMEEKLLRDLTREICSLLSTMASS---GLNNGIPPIEQSGHFYRVDVLSLKDLDAFAS 655
E++EE+L+R LTRE+ L++ S ++ PP + ++ A A
Sbjct: 954 QEMLEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVT---PSAMAE 1010
Query: 656 NSMVG-FLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 714
+ +G L+KH+D+ L + + W D + + +S +L + S + L V
Sbjct: 1011 LTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSGTL-LADAV 1069
Query: 715 SKDLFSAIIRGLALE-SNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLA 773
+ LF+++++GL + + A LV L +I+ + R R V+ +P I L
Sbjct: 1070 TW-LFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQ 1128
Query: 774 FE-----DALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNA 828
F+ +L K A R + Q R L+ G +K V+ I N+ + + +
Sbjct: 1129 FDCKLLNPSLQKVADKRRKDQFKR--LIAGCIGKPLGEQFRKEVH-IKNLPSLFKKTKPM 1185
Query: 829 PESRTEEGESIGLAAI 844
E+ + + GLA I
Sbjct: 1186 LETEVLDNDGGGLATI 1201
>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|B Chain B, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
pdb|3LOY|C Chain C, Crystal Structure Of A Copper-Containing Benzylamine
Oxidase From Hansenula Polymorpha
Length = 633
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 87/212 (41%), Gaps = 36/212 (16%)
Query: 59 SRKMRILSFLNDDISGAILDISFQRLVKREKAP-GTQGPLELWSDDFEGKGDFSQYRSRL 117
SR + ++ D A++++S+ ++ +K P G GPL ++D
Sbjct: 61 SRMTYVYYYIGLDFYKALVNVSYGHIITNQKQPKGVIGPL--IAED-------------- 104
Query: 118 LELVKFVASNKPLVAG----VKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSA 173
++ ++ +A+ P+V +K+ V + + + T +D +++ + SA
Sbjct: 105 IQEIEELATTHPIVKAEIEKLKLPPHVRVVCDPWMNGTDSKEDRMLIQCYMY----LASA 160
Query: 174 VFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTE--PPLVVALGHYLDALGPFLKYY 231
SN + + L S +FE L ++ + + + V D PF++Y+
Sbjct: 161 AHPESNHYS-----LPLKFSPVFECLTKKFVRMDYLPGGADETVTETQAWDEF-PFVEYH 214
Query: 232 PDAVGGVISKLFELLTSLPFVFKDPSTNSARH 263
PD G I L L+ P + PS N H
Sbjct: 215 PDLNGETIVPLKPLIVQQP---EGPSFNVDGH 243
>pdb|2IUC|A Chain A, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 34/123 (27%)
Query: 602 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQS-------GHFYRVDVLSLKDLDAFA 654
+EE++ D+T S L A GLN ++ G+ + ++ L D + A
Sbjct: 150 LEEEIAMDMTE---SDLDFFAGGGLNYFTSRKDKKDVLAILKGNQFTINTTGLTDFSSIA 206
Query: 655 SNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 714
SN +GFLL D A+P ++ + +F SA LAI QF+
Sbjct: 207 SNRKMGFLL--ADEAMPTME--------------SGRGNFLSAATDLAI--------QFL 242
Query: 715 SKD 717
SKD
Sbjct: 243 SKD 245
>pdb|2W5X|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Glu
With Mg Bound In The M3 Site.
pdb|2W5X|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Glu
With Mg Bound In The M3 Site
Length = 375
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 34/123 (27%)
Query: 602 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQS-------GHFYRVDVLSLKDLDAFA 654
+EE++ D+T S L A GLN ++ G+ + ++ +L D + A
Sbjct: 150 LEEEIAMDMTE---SDLDFFAGGGLNYFTKRKDKKDVLAILKGNQFTINTTALTDFSSIA 206
Query: 655 SNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 714
SN +GFLL D A+P ++ +F SA LAI QF+
Sbjct: 207 SNRKMGFLL--ADEAMPTMEKGR--------------GNFLSAATDLAI--------QFL 242
Query: 715 SKD 717
SKD
Sbjct: 243 SKD 245
>pdb|2W5V|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Mg Bound In The M3 Site.
pdb|2W5V|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Mg Bound In The M3 Site.
pdb|2W5W|A Chain A, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Zn Bound In The M3 Site.
pdb|2W5W|B Chain B, Structure Of Tab5 Alkaline Phosphatase Mutant His 135 Asp
With Zn Bound In The M3 Site
Length = 375
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 34/123 (27%)
Query: 602 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQS-------GHFYRVDVLSLKDLDAFA 654
+EE++ D+T S L A GLN ++ G+ + ++ +L D + A
Sbjct: 150 LEEEIAMDMTE---SDLDFFAGGGLNYFTKRKDKKDVLAILKGNQFTINTTALTDFSSIA 206
Query: 655 SNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 714
SN +GFLL D A+P ++ +F SA LAI QF+
Sbjct: 207 SNRKMGFLL--ADEAMPTMEKGR--------------GNFLSAATDLAI--------QFL 242
Query: 715 SKD 717
SKD
Sbjct: 243 SKD 245
>pdb|2IUC|B Chain B, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 34/123 (27%)
Query: 602 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQS-------GHFYRVDVLSLKDLDAFA 654
+EE++ D+T S L A GLN + G+ + ++ L D + A
Sbjct: 150 LEEEIAMDMTE---SDLDFFAGGGLNYFTSRSDSKDVLAILKGNQFTINTTGLTDFSSIA 206
Query: 655 SNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 714
SN +GFLL D A+P ++ +F SA LAI QF+
Sbjct: 207 SNRKMGFLL--ADEAMPTME--------------KGRGNFLSAATDLAI--------QFL 242
Query: 715 SKD 717
SKD
Sbjct: 243 SKD 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,080,758
Number of Sequences: 62578
Number of extensions: 900179
Number of successful extensions: 2148
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2141
Number of HSP's gapped (non-prelim): 10
length of query: 845
length of database: 14,973,337
effective HSP length: 107
effective length of query: 738
effective length of database: 8,277,491
effective search space: 6108788358
effective search space used: 6108788358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)