BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003136
(845 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WP44|HASTY_ARATH Protein HASTY 1 OS=Arabidopsis thaliana GN=HST1 PE=1 SV=1
Length = 1202
Score = 1146 bits (2965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/843 (67%), Positives = 677/843 (80%), Gaps = 19/843 (2%)
Query: 4 QMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMR 63
QMLG+FQHFK+ LHF++LLFWL+LMRDL+ K K A G + D S +VDS K +
Sbjct: 351 QMLGFFQHFKLGLHFEALLFWLSLMRDLLPKPKAATYPSGGGSSTGGDDSSSQVDSEKKK 410
Query: 64 ILSFLNDDISGAILDISFQRLVKREKAPG----TQGPLELWSDDFEGKGDFSQYRSRLLE 119
LS +NDDIS AILD+SFQR++K+EK P + GPLELWSD+FEGKGDF YRS+LLE
Sbjct: 411 TLSLINDDISSAILDVSFQRMLKKEKVPTGIALSLGPLELWSDEFEGKGDFGPYRSKLLE 470
Query: 120 LVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSN 179
L+K AS+KPL++ K+SERV+ +I LL S P Q +AVM+S Q AL+ +V+ +FDGSN
Sbjct: 471 LIKLTASHKPLISSTKISERVITLIKHLLASPAPLQHVAVMDSQQLALDCIVATLFDGSN 530
Query: 180 QFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVI 239
+F G +SEV +L IFEGLL+QLLSLKW EP L+ HYLDA+GPFLKY+PDAVG +I
Sbjct: 531 EFAGGSSEVHYALRGIFEGLLQQLLSLKWNEPELMKVHVHYLDAMGPFLKYFPDAVGSLI 590
Query: 240 SKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQR 299
+KLFELLTSLP V KDP+T+++R ARLQICTSFIRIAK ++KS+LPHMK IADTM YL +
Sbjct: 591 NKLFELLTSLPHVVKDPATSTSRAARLQICTSFIRIAKAAEKSVLPHMKGIADTMGYLAK 650
Query: 300 EGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLV 359
EG LLRGEHN+LGEAFLVMAS+AG QQQQEVLAWLLEPLSQQW+Q EWQNNYLS+P+GLV
Sbjct: 651 EGTLLRGEHNILGEAFLVMASSAGAQQQQEVLAWLLEPLSQQWIQPEWQNNYLSDPMGLV 710
Query: 360 RLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPL 419
RLCS+TSFMWS++HTVTFFE+ALKRSG RK+NLN S++ S HPMA HLSWMLPPL
Sbjct: 711 RLCSNTSFMWSIYHTVTFFEKALKRSGYRKSNLNTTSATTPAS---HPMAHHLSWMLPPL 767
Query: 420 LKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDT 479
LKLLR +HS+WSPS+ Q LP E++AAMTM+DAE++SLLGE NPK S+G +ADGS +
Sbjct: 768 LKLLRVLHSLWSPSVFQTLPPEMRAAMTMTDAERYSLLGEANPKLSKGVSVYADGS-FEG 826
Query: 480 SKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEF 539
+KEG E +ESDIRNWLKG+RD GYNVLGLS TIG+ FFK LD+ V +ALMEN+QSMEF
Sbjct: 827 TKEGQAEASESDIRNWLKGIRDCGYNVLGLSTTIGETFFKCLDANYVAMALMENLQSMEF 886
Query: 540 RHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE-------- 591
RHIR +H+ + ++VK CP DMWE WL LL+PLFIHCQQ LSS+W L+ E
Sbjct: 887 RHIRLFIHTFITYIVKSCPADMWESWLGVLLHPLFIHCQQALSSAWPGLLQEGRAKVPDL 946
Query: 592 ---VAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLK 648
+GSD+K+EVMEEKLLRDLTREI +L STMAS GLN G+P +E SGH RVD+ +L
Sbjct: 947 FGIQSGSDMKLEVMEEKLLRDLTREIATLFSTMASPGLNTGVPVLEHSGHVGRVDMSTLT 1006
Query: 649 DLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNI 708
DL AF SNSMVGFLL HK +ALPALQI LE FTWTDGEA TKV FC VVLLA +NN+
Sbjct: 1007 DLHAFRSNSMVGFLLNHKSVALPALQICLETFTWTDGEATTKVCYFCGVVVLLAKLTNNV 1066
Query: 709 ELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITP 768
ELR+FVSKD+FSA+IRGL +ESNA+ S DLV +CREIFIY+ DRDPAPRQVLLSLPC+TP
Sbjct: 1067 ELREFVSKDMFSAVIRGLGMESNAINSPDLVNICREIFIYLSDRDPAPRQVLLSLPCLTP 1126
Query: 769 QDLLAFEDALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNA 828
DL AFE+A KT+SP+EQKQ MRSLL+LGTGNNLKALAAQKS NVITNV+ R R +A
Sbjct: 1127 NDLHAFEEATAKTSSPKEQKQLMRSLLLLGTGNNLKALAAQKSQNVITNVTARTRLPASA 1186
Query: 829 PES 831
PE+
Sbjct: 1187 PET 1189
>sp|Q54PQ8|XPO5_DICDI Exportin-5 OS=Dictyostelium discoideum GN=xpo5 PE=3 SV=1
Length = 1135
Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 177/802 (22%), Positives = 338/802 (42%), Gaps = 124/802 (15%)
Query: 56 KVDSRKMRILSFLNDDISGAILDISFQRLVKREKAPGTQ--------GPLELWSDDFEGK 107
KV+S ++ L + I +L + F R+ EK+ Q G + WS+ F G
Sbjct: 373 KVESLELSYLEEVIKQIMETML-VKFVRIGDPEKSDSEQSKYSEIDFGTSKEWSNFFGG- 430
Query: 108 GDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLL----ISTMPAQDLAVMESM 163
R+R L+++K + + +A + ++ +V ++++L ++++ + V+ES
Sbjct: 431 -----VRTRYLDIIKLITIQRREMAYIFIATKVADVLDALKANLNVASLSHEQTLVLESH 485
Query: 164 QSALENVVSAVFD---GSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHY 220
L++++ + D S+ F + Q ++ ++ + +L L + TEP +
Sbjct: 486 SHILDSILLNIKDFTPESSLFFNKEQQQQPNIIQLTDRVLNLLFEINSTEPNIT---SFQ 542
Query: 221 LDALGPFLKYY---PDAVGGVISKLFELLTSLPFV-FKDPS---TNSARHARLQICTSFI 273
+D L ++ YY P+++ +++K+ L+ PF +P+ NS H R + +S I
Sbjct: 543 IDCLQAYILYYQTNPESIKFLLNKIVPLI---PFPGLDNPNRSFQNSVLHTRRRAISSLI 599
Query: 274 RIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASA-AGIQQQQEVLA 332
I+ + P+ + ++ L ++ + E +L +V ++ QQ +
Sbjct: 600 GISTNISHLMKPYFDILYKSVVELFQKNVVTETEKVMLFHLLIVFSNNLPSYQQTLDFYK 659
Query: 333 WLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANL 392
+L P+ +QW+ LE + LS P ++ S S T R R I+
Sbjct: 660 GILTPIIEQWVSLE-MSTALSSPDAFIQYLG-LSIADSQNLDATLVSR---RKNIQYVAS 714
Query: 393 NLQ----------SSSAE------NSAVMH----PMASHLSWMLPPLLKLLRAIHSIWSP 432
LQ +SS E ++ + + P++S + +LP +L L R +H +W P
Sbjct: 715 TLQIFWKKSQIPTNSSDELFAPFISNGISYNGKWPISSFVKQVLPGVLSLTRTLHQLWMP 774
Query: 433 SISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGE-PNESD 491
+ + + D+ LLG + KE E N +
Sbjct: 775 EHRAKIHPSLSTIFNLDDSITAPLLG------------------FEYHKEQKSESSNVTF 816
Query: 492 IRNWLKGVRDSGYNVLGLSATIGDPFFK-SLDSGSVVVALMENIQSMEFRHIRQLVHSVL 550
+RN L +RD+ Y ++G D F ++ ++ ++S+E RH++ LV +L
Sbjct: 817 LRNILDCLRDACYEIVGYGFNHSDELFSLPDLPLVLLDSVFSYLESIENRHLKLLVKHIL 876
Query: 551 IHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLM---HEVAGSDLKVEVMEEKLL 607
+++K CP + E +L LF + + W + + + K E++E+K+L
Sbjct: 877 NYLIKNCPTKLEHTIFEPILPLLFSVLFNRIKAGWELIKLRSQKGEKENEKNEIVEDKIL 936
Query: 608 RDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKD 667
RD++ E S + + N F +DV++ + S+ ++
Sbjct: 937 RDVSMEFLMCCSNIITQSPNYI---------FSSIDVMT--PMVYGISSCLMA------- 978
Query: 668 LALPALQISLEAFT--WTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRG 725
+ P L+ SL T D E V N+ + + + ++F I+
Sbjct: 979 MDTPILKKSLIVSTQLLVDHEKV-----------------NDPKFFKLIGSEMFGCCIKI 1021
Query: 726 LALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPR 785
L + A S D+ + R I++ P+++LLSLP ITP L AF L T S +
Sbjct: 1022 LIVNKFAEFSNDIQSIIRLIYMKYYQICNYPQEILLSLPNITPPILQAFNKDLISTRSEK 1081
Query: 786 EQKQHMRSLL--VLGTG-NNLK 804
QK + LL V+G N LK
Sbjct: 1082 SQKVLFKKLLQDVIGIPLNKLK 1103
>sp|Q9HAV4|XPO5_HUMAN Exportin-5 OS=Homo sapiens GN=XPO5 PE=1 SV=1
Length = 1204
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 157/736 (21%), Positives = 318/736 (43%), Gaps = 90/736 (12%)
Query: 161 ESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEG--LLRQLLSLKWTEPPLVVALG 218
E+M LE+V++ +F N+ E+ ++ +G LL+ +L+ +P ++ +
Sbjct: 504 EAMTLFLESVITQMFRTLNR-----EEIPVN-----DGIELLQMVLNFDTKDPLILSCVL 553
Query: 219 HYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVF----KDPSTNSARHARLQICTSFIR 274
+ AL PF+ Y P+ + V SKLF +S+ F K P T + R+ R C+S I+
Sbjct: 554 TNVSALFPFVTYRPEFLPQVFSKLF---SSVTFETVEESKAPRTRAVRNVRRHACSSIIK 610
Query: 275 IAKTSDKSILPHMKDIADTMA-YLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEV-LA 332
+ + + +LP+ + + + L E L + E L EA +++++ ++Q+V L
Sbjct: 611 MCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLE 670
Query: 333 WLLEPLSQQWMQLEWQ--------------------NNYLSEPLGLVRLCSDTSFMWSLF 372
L+ P++ W+ + + L +P GL R + ++
Sbjct: 671 ELMAPVASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNR----ARMSFCVY 726
Query: 373 HTVTFFERALKRSGIRKANLN---LQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSI 429
+ +R + + +A + +S+ N +P + +L LL L+R +++
Sbjct: 727 SILGVVKRTCWPTDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALIRTHNTL 786
Query: 430 WSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNE 489
++P + + A+ M DAE+ ++LG P + D T E
Sbjct: 787 YAPEMLAKMAEPFTKALDMLDAEKSAILGLPQP-----LLELNDSPVFKTVLE------- 834
Query: 490 SDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLD-SGSVVVALMENIQSMEFRHIRQLVH 547
++ + + ++ +++LG + ++ F+ D + ++ + N+ ++ +R ++
Sbjct: 835 -RMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLR 893
Query: 548 SVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE--VAGSDLKV------ 599
+ +V FCP + +E + +L PLF + LS W + + G D
Sbjct: 894 VFVKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPES 953
Query: 600 -EVMEEKLLRDLTREICSLLSTMASS---GLNNGIPPIEQSGHFYRVDVLSLKDLDAFAS 655
E++EE+L+R LTRE+ L++ S ++ PP + ++ A A
Sbjct: 954 QEMLEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVTPS---AMAE 1010
Query: 656 NSMVG-FLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV 714
+ +G L+KH+D+ L + + W D + + +S +L + S + L V
Sbjct: 1011 LTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSGTL-LADAV 1069
Query: 715 SKDLFSAIIRGLALE-SNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLA 773
+ LF+++++GL + + A LV L +I+ + R R V+ +P I L
Sbjct: 1070 TW-LFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQ 1128
Query: 774 FE-----DALTKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNVITNVSTRPRSSDNA 828
F+ +L K A R + Q R L+ G +K V+ I N+ + + +
Sbjct: 1129 FDCKLLNPSLQKVADKRRKDQFKR--LIAGCIGKPLGEQFRKEVH-IKNLPSLFKKTKPM 1185
Query: 829 PESRTEEGESIGLAAI 844
E+ + + GLA I
Sbjct: 1186 LETEVLDNDGGGLATI 1201
>sp|Q924C1|XPO5_MOUSE Exportin-5 OS=Mus musculus GN=Xpo5 PE=2 SV=1
Length = 1204
Score = 83.2 bits (204), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 153/728 (21%), Positives = 306/728 (42%), Gaps = 74/728 (10%)
Query: 161 ESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHY 220
E+M LE+V++ +F ++ +L +S E LL+ +L+ + +P ++ +
Sbjct: 504 EAMTFFLESVINQMFRTLDK-------EELPVSDGIE-LLQLVLNFEIKDPLVLSCVLTN 555
Query: 221 LDALGPFLKYYPDAVGGVISKLFELLTSLPF-VFKDPSTNSARHARLQICTSFIRIAKTS 279
+ AL PF+ Y P + V SKLF +T K P T + R+ R C+S ++ +
Sbjct: 556 VSALFPFVTYKPAFLPQVFSKLFSFVTFESVGESKAPRTRAVRNVRRHACSSINKMCRDY 615
Query: 280 DKSILPHMKDI-ADTMAYLQREGRLLRGEHNLLGEAFLVMASA-AGIQQQQEVLAWLLEP 337
+LP+ + + L E L + E L EA +++++ ++Q+ L L+ P
Sbjct: 616 PDLVLPNFDMLYSHVKQLLSNELLLTQMEKCALMEALVLVSNQFKDYERQKLFLEELMAP 675
Query: 338 LSQQWM--------------------QLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTF 377
+ W+ L+ + + +P GL R + SF ++ +
Sbjct: 676 VVNIWLSEEMCRALSDIDSFIAYVGADLKSCDPAVEDPCGLNR--ARMSF--CVYSILGV 731
Query: 378 FERALKRSGIRKANLN---LQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSI 434
R S + +A + + + N +P + +L LL L+R +++++P +
Sbjct: 732 MRRTSWPSDLEEAKAGGFVVGYTPSGNPIFRNPCTEQILRLLDNLLALVRTHNTLYTPEM 791
Query: 435 SQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRN 494
+ A+ + ++E+ ++LG P + F D T+ E ++
Sbjct: 792 LTKMAEPFTKALDIVESEKTAILGLPQP-----LLEFNDHPVYRTTLER--------MQR 838
Query: 495 WLKGVRDSGYNVLGLSA-TIGDPFFKSLDSGSVVV-ALMENIQSMEFRHIRQLVHSVLIH 552
+ + ++ Y++LG + ++ F+ D S ++ + N+ ++ +R ++ +
Sbjct: 839 FFGILYENCYHILGKAGPSMQQDFYTVEDLASQLLGSAFVNLNNIPDFRLRSMLRVFVKP 898
Query: 553 MVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHE--VAGSD-------LKVEVME 603
+V FCP + +E + +L PLF + LS W + + G D E++E
Sbjct: 899 LVLFCPSEHYETLISPILGPLFTYLHMRLSQKWHVINQRSILCGEDEIAEDNPESQEMLE 958
Query: 604 EKLLRDLTREICSL-LSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFL 662
E+L+R LTRE L ++ S + G + + + L
Sbjct: 959 EQLVRMLTREAMDLIMACCVSKKTADHTAAPTADGDDEEMMATEVAPSSVVELTDLGKCL 1018
Query: 663 LKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAI 722
+KH+D+ L + + TW D + + ++ +L + S + L V+ LF+++
Sbjct: 1019 MKHEDVCTALLITAFNSLTWKDTLSCQRATTQLCWPLLKQVMSGTL-LADAVTW-LFTSV 1076
Query: 723 IRGLALE-SNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDAL--- 778
++GL + + A LV L +I+ + R R V+ +P I + L F+ L
Sbjct: 1077 LKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEINKESLDQFDCKLLNP 1136
Query: 779 -TKTASPREQKQHMRSLLVLGTGNNLKALAAQKSVNV-ITNVSTRPRSSDNAPESRTEEG 836
+ A+ + +K H + L+ G K L Q V I N+ + E+ +
Sbjct: 1137 SLQKAADKRRKDHFKRLIAGCIG---KPLGEQFRKEVHIKNLPWLFKKPKPMLETEVLDS 1193
Query: 837 ESIGLAAI 844
E GLA I
Sbjct: 1194 EEGGLATI 1201
>sp|Q0VNJ1|MUTS_ALCBS DNA mismatch repair protein MutS OS=Alcanivorax borkumensis (strain
SK2 / ATCC 700651 / DSM 11573) GN=mutS PE=3 SV=1
Length = 859
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 104/247 (42%), Gaps = 53/247 (21%)
Query: 113 YRSRLLELVKFVASNK----PLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALE 168
Y +RL++L + VA + P +A V +V+ I+ +S D A++E + +
Sbjct: 77 YLARLVKLGESVAIAEQIGDPALAKGPVERKVVRIVTPGTVS-----DEALLEERR---D 128
Query: 169 NVVSAVFDGSNQFGGANSEVQLSLSRIF----EGLLR-QLLSLKWTEPPLVVALGHYL-- 221
N++ AVFD +NQ+G A+ + L+ R EG + Q L +W+ L+++ H L
Sbjct: 129 NLLCAVFDHNNQYGCAS--LDLAAGRFLVTQVEGAEQLQALLERWSPAELLISEEHGLPG 186
Query: 222 ---DALG----PFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIR 274
D G P ++ DA + + F++ F P SA + +
Sbjct: 187 RWSDRPGTRKRPSWEFDEDAARRQLCQQFQVQDLAGFGEPSPVAVSA-------AGALLG 239
Query: 275 IAKTSDKSILPHMKDIA-----DTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQE 329
AK + + LPH+ + D +A R L L G Q+Q
Sbjct: 240 YAKETQRGELPHITGLTVESFDDAVAMDAATRRNLELTETLDG-------------QEQH 286
Query: 330 VLAWLLE 336
LAW+L+
Sbjct: 287 TLAWVLD 293
>sp|O14116|YKX1_SCHPO Uncharacterized protein C328.01c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC328.01c PE=4 SV=2
Length = 1234
Score = 33.9 bits (76), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 86/415 (20%), Positives = 157/415 (37%), Gaps = 62/415 (14%)
Query: 415 MLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADG 474
++P LLKL+ +H + PS L + + S E+F L G + S+ +
Sbjct: 796 VVPNLLKLVEQLHCCYEPSFISGLGMHNSSILQKSIVERFWL--HGVSQISKNQF-LEES 852
Query: 475 SQLDTSK----EGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLD-SGSVVVA 529
++D S +G ++L+ +R+ Y + +G FF S + A
Sbjct: 853 YKMDVSANKLIHSFG--------HFLRRLREYCYYAIASFMRLGQAFFCVPGLSKQFLTA 904
Query: 530 LMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSS-- 587
+ + +V+ V+ CP ++ + L LL L L S W
Sbjct: 905 FFSHAAGLSLHQWTSMVNVVIKPYCVNCPAELRDECLLPLLPALLSELDHKLVSEWRRIN 964
Query: 588 ----LMHEVA-----GSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGH 638
L+ E A DL E++EE LLR LT L++ I P + +
Sbjct: 965 DRGLLVEEDAEETGEDDDLSEEMIEESLLRHLTYATAKLITETFLQ-----ITPTQSRSN 1019
Query: 639 FYRVDVLSLKDLDAFASNSMVG------------FLLKHKDLALPALQISLEAFTWTDGE 686
S+S++G ++L + + P L D
Sbjct: 1020 ---------------VSSSLIGKETVEGPVKLSEYVLDNAIICEPLLCTLCHLLVIHDSR 1064
Query: 687 AV-TKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREI 745
V V++F + LL + + +R+F+ + +F ++I + + +D + L I
Sbjct: 1065 TVGLVVNAFLAITPLLVSEQAHSLVREFICQQVFQSVILAIHDPYFESMQSDFIRLACII 1124
Query: 746 FIYMCDRDPAPRQVLLSLPCITPQDLL--AFEDALTKTASPREQKQHMRSLLVLG 798
Y + Q+L S+P + Q+ L AF + + ++ + QK + LL G
Sbjct: 1125 LSYSQGITDSAFQLLASIPALANQENLVPAFFNKFREASTLKIQKALLTRLLNSG 1179
>sp|A0LJ24|COBQ_SYNFM Cobyric acid synthase OS=Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB) GN=cobQ PE=3 SV=1
Length = 514
Score = 33.5 bits (75), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 268 ICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQ 327
+ +F RI K S+ P +Y+ EG GE +G A +V A AAGI+
Sbjct: 22 LAAAFCRILKQDGYSVAPFKAQNMALNSYITPEG----GE---MGRAQVVQAEAAGIEPH 74
Query: 328 QEVLAWLLEPLSQQWMQL 345
++ LL+P SQ Q+
Sbjct: 75 VDMNPVLLKPTSQMGSQV 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 295,081,295
Number of Sequences: 539616
Number of extensions: 11890384
Number of successful extensions: 30628
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 30603
Number of HSP's gapped (non-prelim): 17
length of query: 845
length of database: 191,569,459
effective HSP length: 126
effective length of query: 719
effective length of database: 123,577,843
effective search space: 88852469117
effective search space used: 88852469117
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)