Query 003136
Match_columns 845
No_of_seqs 162 out of 206
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 17:42:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2020 Nuclear transport rece 99.7 1.8E-15 3.9E-20 184.0 24.1 647 1-822 336-1032(1041)
2 KOG2021 Nuclear mRNA export fa 98.8 0.0004 8.6E-09 81.3 44.6 280 4-340 339-639 (980)
3 KOG2022 Nuclear transport rece 98.6 0.0037 8E-08 74.8 50.8 281 2-342 353-641 (982)
4 KOG2023 Nuclear transport rece 96.8 0.076 1.6E-06 62.2 19.3 207 103-343 359-570 (885)
5 KOG2081 Nuclear transport regu 96.7 0.4 8.7E-06 55.7 23.8 259 2-340 293-556 (559)
6 KOG2171 Karyopherin (importin) 94.7 17 0.00037 46.0 33.5 193 98-301 310-528 (1075)
7 COG5101 CRM1 Importin beta-rel 92.2 5.6 0.00012 47.0 16.8 298 16-345 358-674 (1053)
8 KOG2171 Karyopherin (importin) 91.0 5.5 0.00012 50.2 16.3 200 111-342 94-302 (1075)
9 PF08767 CRM1_C: CRM1 C termin 88.1 35 0.00077 38.0 18.7 129 670-799 164-315 (319)
10 KOG1241 Karyopherin (importin) 87.1 67 0.0014 39.4 20.6 184 111-319 515-710 (859)
11 PF12717 Cnd1: non-SMC mitotic 84.2 20 0.00044 36.2 13.2 119 207-342 35-159 (178)
12 PF11935 DUF3453: Domain of un 81.2 9.4 0.0002 40.7 9.8 104 190-295 106-210 (239)
13 PF12755 Vac14_Fab1_bd: Vacuol 79.2 9.4 0.0002 34.8 7.7 40 262-301 41-80 (97)
14 PF05327 RRN3: RNA polymerase 75.8 16 0.00035 44.0 10.7 138 196-341 71-213 (563)
15 KOG2023 Nuclear transport rece 72.4 27 0.00059 41.9 10.8 122 196-335 172-301 (885)
16 KOG2020 Nuclear transport rece 70.6 20 0.00044 45.7 10.1 132 209-340 57-189 (1041)
17 KOG1059 Vesicle coat complex A 65.5 1.6E+02 0.0035 36.1 15.2 191 160-363 268-503 (877)
18 KOG1991 Nuclear transport rece 64.1 4E+02 0.0087 34.0 19.7 273 97-388 372-697 (1010)
19 PF03378 CAS_CSE1: CAS/CSE pro 62.1 2.2E+02 0.0047 33.3 15.7 232 233-584 22-254 (435)
20 PF08167 RIX1: rRNA processing 61.2 1.8E+02 0.0039 29.0 14.3 137 130-296 20-162 (165)
21 KOG2274 Predicted importin 9 [ 60.3 4.5E+02 0.0097 33.3 18.2 106 200-320 454-559 (1005)
22 PF08623 TIP120: TATA-binding 59.4 51 0.0011 33.3 8.7 104 498-621 42-145 (169)
23 KOG1059 Vesicle coat complex A 53.7 50 0.0011 40.1 8.5 133 232-429 139-271 (877)
24 PF14911 MMS22L_C: S-phase gen 46.8 4.9E+02 0.011 29.7 17.2 100 697-796 260-370 (373)
25 cd05167 PI4Kc_III_alpha Phosph 46.8 92 0.002 34.6 8.9 69 733-801 221-294 (311)
26 PF08506 Cse1: Cse1; InterPro 45.1 57 0.0012 37.1 7.3 139 97-246 212-355 (370)
27 PF05918 API5: Apoptosis inhib 44.3 69 0.0015 38.3 7.9 80 222-318 43-123 (556)
28 KOG0915 Uncharacterized conser 41.3 2.7E+02 0.0058 37.1 12.6 32 259-290 1142-1173(1702)
29 PF08167 RIX1: rRNA processing 34.0 3.7E+02 0.0081 26.7 10.4 117 116-247 44-161 (165)
30 PF08506 Cse1: Cse1; InterPro 33.7 7.6E+02 0.017 28.1 15.7 43 258-300 106-148 (370)
31 PF12755 Vac14_Fab1_bd: Vacuol 32.7 1.7E+02 0.0037 26.6 6.9 23 327-349 21-43 (97)
32 PF01602 Adaptin_N: Adaptin N 32.4 5.4E+02 0.012 30.1 13.2 163 112-319 57-220 (526)
33 cd00893 PI4Kc_III Phosphoinosi 31.8 2.2E+02 0.0048 31.3 8.9 69 734-802 200-273 (289)
34 PF01602 Adaptin_N: Adaptin N 31.6 1.9E+02 0.0041 34.0 9.1 87 656-750 399-486 (526)
35 PF08064 UME: UME (NUC010) dom 31.2 3.2E+02 0.007 25.2 8.7 85 203-298 20-105 (107)
36 cd05166 PI3Kc_II Phosphoinosit 29.3 2E+02 0.0044 32.6 8.3 69 733-801 265-339 (353)
37 KOG2956 CLIP-associating prote 28.9 9.7E+02 0.021 28.3 13.4 36 260-295 460-496 (516)
38 PF02197 RIIa: Regulatory subu 27.5 1E+02 0.0023 23.0 3.8 32 112-143 2-33 (38)
39 COG5215 KAP95 Karyopherin (imp 27.2 1.2E+03 0.026 28.3 17.0 236 192-446 492-750 (858)
40 smart00802 UME Domain in UVSB 27.1 4E+02 0.0086 24.8 8.4 90 198-298 15-105 (107)
41 KOG4413 26S proteasome regulat 26.8 9.5E+02 0.021 27.0 17.7 154 191-366 297-461 (524)
42 PF00220 Hormone_4: Neurohypop 24.4 27 0.00057 18.0 0.1 7 553-559 2-8 (9)
43 PF10508 Proteasom_PSMB: Prote 24.0 1.3E+03 0.027 27.5 15.0 148 193-366 285-442 (503)
44 KOG2753 Uncharacterized conser 23.7 1.1E+03 0.023 26.6 14.7 52 232-295 102-155 (378)
45 cd05168 PI4Kc_III_beta Phospho 23.4 2.9E+02 0.0062 30.5 7.9 70 733-802 200-277 (293)
46 smart00394 RIIa RIIalpha, Regu 23.0 1.3E+02 0.0028 22.3 3.6 32 112-143 2-33 (38)
47 PF13495 Phage_int_SAM_4: Phag 21.2 2E+02 0.0044 24.5 5.1 64 732-804 16-84 (85)
48 PF06407 BDV_P40: Borna diseas 20.9 1.1E+02 0.0025 32.9 3.9 54 260-313 132-186 (370)
49 cd05174 PI3Kc_IA_delta Phospho 20.9 2.4E+02 0.0052 32.0 6.8 70 733-802 272-347 (361)
50 PF12717 Cnd1: non-SMC mitotic 20.5 8.6E+02 0.019 24.3 11.0 132 656-801 10-158 (178)
51 PF05004 IFRD: Interferon-rela 20.4 8.9E+02 0.019 26.8 11.2 100 687-797 201-307 (309)
52 COG5656 SXM1 Importin, protein 20.0 1.4E+03 0.029 28.8 12.8 76 97-172 358-445 (970)
No 1
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.8e-15 Score=183.95 Aligned_cols=647 Identities=12% Similarity=0.038 Sum_probs=384.8
Q ss_pred CHHHHHhhhccchHHHHHhHHHHHHHHHHhhhc-ccc-ccccCCCCCcccCCCCCCCCccchhhhhhcccchhhHHHHHH
Q 003136 1 MSFQMLGYFQHFKIALHFQSLLFWLALMRDLMS-KTK-VAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILD 78 (845)
Q Consensus 1 yL~~~L~~t~HpSl~ls~~~l~~W~~llr~~~~-k~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~LL~ 78 (845)
|+..++.++.|||...++ ++..|+.+++|... +++ ++.+++
T Consensus 336 ~~~li~i~~~~~se~~~~-~ld~W~~lv~~l~~~~~~ll~~s~~------------------------------------ 378 (1041)
T KOG2020|consen 336 LLELILISTIEPSEIFKI-CLDYWNKLVADLYYNKPPLLQLSTT------------------------------------ 378 (1041)
T ss_pred HHHHHHHhccCchhHHHH-HHHHHHHHHHhhhcccccccccccc------------------------------------
Confidence 567889999999999999 99999999999332 333 222211
Q ss_pred HHHHHHhhhcCCCCCCCCccccccccCCchhH----HHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHH---HhhcccCC
Q 003136 79 ISFQRLVKREKAPGTQGPLELWSDDFEGKGDF----SQYRSRLLELVKFVASNKPLVAGVKVSERVMAI---INSLLIST 151 (845)
Q Consensus 79 ~~~~rl~k~~~~~~~~~~~~~~~~DFds~~ef----~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~---l~~~~~~~ 151 (845)
.++. ..|.++||+ +++| ++|| ++|...+.+|+..+-.-.++.+.+ ..+ ..+.
T Consensus 379 -----------~~~~---~~~~ri~~r-k~~y~~~~~~~r-----~l~l~~m~~Pe~vlive~~~~~~vre~~~~-~~~~ 437 (1041)
T KOG2020|consen 379 -----------LPSI---SDYSRIDFR-KSIYQEFLSKLR-----LLRLERMAKPEEVLIVENEQGEIVREFMKD-HDFI 437 (1041)
T ss_pred -----------cccc---cchhccchH-HHHHHHHHHHHH-----HHHHHHhcCchheeEEechHHHHHHHhccC-cchh
Confidence 1111 228899999 8887 6777 899999999999992222222222 221 1234
Q ss_pred CCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcC
Q 003136 152 MPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYY 231 (845)
Q Consensus 152 ~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~ 231 (845)
.-.+.+.+|++..++++.++...+... +....+.+.+.+++..+|++-+.. +.-+
T Consensus 438 ~ly~~~~e~l~~~~~L~~~~t~~~~~~---------------kl~~~l~~~~~~~~~ln~l~~ai~----sisg------ 492 (1041)
T KOG2020|consen 438 TLYPVLRETLVYLLHLDVVDTEKIMTE---------------KLAIQLDGDEWSLHNLNRLCWAIG----SISG------ 492 (1041)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhH---------------hHHHHhhHHHHhhhhhhhHHHHHH----HHHh------
Confidence 445889999999999999987655522 124567777788888888877664 1111
Q ss_pred CCchHHHHHHHHHHhcC-CCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHH--cCccchhhH
Q 003136 232 PDAVGGVISKLFELLTS-LPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQR--EGRLLRGEH 308 (845)
Q Consensus 232 p~~l~~VL~klf~~l~~-~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~--~~~Ls~~E~ 308 (845)
.+++.+.+|+|..++. ........+..+ .. |..+..|++.+| .+|.|...+ .+++. ..+|-..++
T Consensus 493 -~~~e~~e~k~~~~v~~d~l~l~E~~~~kd-----n~-avi~~Ni~~vv~--q~p~Fl~~h---~~~Lkt~~~~L~efmh 560 (1041)
T KOG2020|consen 493 -RMLEDMEKKFFVAVIRDLLNLCERKRGKD-----NK-AVIASNIMYVVG--QYPRFLKAH---WKFLKTVVHKLFEFMH 560 (1041)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHhhcCC-----ch-hHHHHHHHHHhc--ccchHHHHH---HHHHHHHHHHHHHHHh
Confidence 4667778888886652 111111111111 11 666667999999 999999987 33333 234555555
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHHhh-chHhHhhhhcCCH------HHHHHHhcCCc--ccchhHhhHHHHH
Q 003136 309 NLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQW-MQLEWQNNYLSEP------LGLVRLCSDTS--FMWSLFHTVTFFE 379 (845)
Q Consensus 309 ~~L~EaLl~is~~~~~~~q~~~L~~ll~P~~~~W-~~~e~~~~~lss~------~~f~~~~g~~~--~~~~~~~~v~~~~ 379 (845)
....+ +.+ .+++.+-+++.+....| ..+. +-..| .++....|+-. .+-..+..+.
T Consensus 561 e~h~g----vqd-----macd~F~~ii~~~~~~fv~~~~----~e~~~fv~~~~~~l~~i~~~l~~~q~~~~~~al~--- 624 (1041)
T KOG2020|consen 561 ETHEG----VQD-----MACDTFIKIIQKCKRHFVITQL----GETKPFVGELLLNLTAITEDLQPQQRHTFYEALG--- 624 (1041)
T ss_pred hhhHH----HHh-----hhHHHHHHHHHhhhhhheeecc----cccccchHHHhhcccchhcCchHHHHHHHHHHHH---
Confidence 55554 222 22335555555555554 2221 22222 11222222211 1222332222
Q ss_pred HHHHhcccccccc--cc-----ccCCCCCcccccchhhhhhhhhhHHHHHHHHHHhccCccccCcCcHHHHHHccCCHHH
Q 003136 380 RALKRSGIRKANL--NL-----QSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAE 452 (845)
Q Consensus 380 ~~Lkr~~~~~~~~--~s-----~~~~~~~~~~~~P~~~~i~~iLP~lL~Llr~~h~l~~P~~~~~Lp~~~~~~~~~~~~E 452 (845)
-+++|+..+.... -+ .+-.-+++..+++++..+...+-++..+++ ...++|++.+.+.+.+.+..++...|
T Consensus 625 ~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~--i~~~~~~~~~sl~~~f~~~~~~~~~d 702 (1041)
T KOG2020|consen 625 LMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLN--ILKTNSRALTSLGSTFVPQLGKIYLD 702 (1041)
T ss_pred HHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHH--HHHhHHHHHHhcCcccccccccccHH
Confidence 2555553322110 00 112245567777888887778888887777 67777888888888888888888888
Q ss_pred HhhhcCCCCCCCccccccccCCCccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhh-cCCcccccCCCchh-HHHHH
Q 003136 453 QFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLDSGS-VVVAL 530 (845)
Q Consensus 453 r~~~lG~~~~~~sk~~~~~~d~~~~~~~~~~~~~~~~~~~r~~l~~~Re~~Y~ilg~~~-~l~~~FY~~~~l~~-l~~al 530 (845)
...+.|......+. ...+. +..++..+++++|..-.||.|+++-|..+ ..+.+||.....++ +-..+
T Consensus 703 ~~~l~~~~s~~v~~--------~~~~~---~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1041)
T KOG2020|consen 703 MLQLYIKQSELVSI--------NVTAG---GSEKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLLDAVL 771 (1041)
T ss_pred HHHHHHHhcccccH--------HHhcc---cccccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHHHHHH
Confidence 88877753311111 11111 12355668999999999999999999999 88889999988888 66788
Q ss_pred hccCCCCchhhHHHHHH--HHHHhhhccCChhhHHHHHHHHhHHHHHHHHHHHHhhHHHhhhhhcCCchhHHHHhhHHHH
Q 003136 531 MENIQSMEFRHIRQLVH--SVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLR 608 (845)
Q Consensus 531 f~~l~~l~~~~lr~ll~--~~vrplv~~CP~~~~~~~l~plL~~lf~~~~~rL~~~W~~i~~~~~~~~~~eE~leE~lLR 608 (845)
|.....+||.+.+.+++ .+++| ...++++.-++..+.+... +. + +......+|+.|++.-+
T Consensus 772 fd~~~nvPd~r~~~vl~l~~~iv~--------~Lg~~i~~~~~~i~~~v~~--c~----l---~m~~~d~qe~~e~~~~f 834 (1041)
T KOG2020|consen 772 FDYLDNVPDYRENEVLSLNATIVP--------KLGEFIPAELPLINIAVLE--CT----L---EMINKDFQEYPEHRLNF 834 (1041)
T ss_pred HHHHccCcchhcchHHHhhhhhhh--------hhhhHhhhhccHHHHHHHh--hh----h---hccccccccchHHHHHH
Confidence 99999999999999885 22222 2233333333311111111 10 0 23456778999999999
Q ss_pred HHhHHHHHHHHHHhcCCCCCCCCCCCCCCCccc-------ccccccccchhhhhhhhhHhHhcCc-----CchhHHHHHH
Q 003136 609 DLTREICSLLSTMASSGLNNGIPPIEQSGHFYR-------VDVLSLKDLDAFASNSMVGFLLKHK-----DLALPALQIS 676 (845)
Q Consensus 609 ~LTre~~~ll~~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~~~~~l~~~ll~~~-----~i~~~~L~~~ 676 (845)
.+++++..+.-..+..+... ++.+.+.. +.|......+-.....+.+.+-..+ -....+..+|
T Consensus 835 ~~lle~l~~~~~~~~~~l~~-----~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~~~~~~~~~~~~~~~~~~l 909 (1041)
T KOG2020|consen 835 LLLLEALLLFCFPAFSELPA-----DQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLAEMEKFANAFYQTYFLSLL 909 (1041)
T ss_pred HHHHHHHHHhhhHHHHcCCc-----hhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999884444333210 11111100 1111111111112233333333222 2345566777
Q ss_pred HhhhcccchhhhhHHHHhHHHHHHHhhhccchhhhHHHHHHHHHHHHHhhcccchHhhHHHHHHHHHHHHHHhcCCCchH
Q 003136 677 LEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAP 756 (845)
Q Consensus 677 ~~~l~w~Dt~~~~ka~~f~~~Lv~~~~~~~~~~l~~~i~~~v~~a~L~~L~~~~~~~~~~~L~~L~~~iy~~l~~~~~~~ 756 (845)
.+++.|-+-.+ +...||.....+..... +-+... ++.++.+++..|+ ++ +.|.-.||..++|.++.
T Consensus 910 ~~~~~~~~~~~--~~~~f~~~~L~~~~l~~---l~~~~~--~~~~l~~~~~v~~---n~---~~L~e~i~~~l~~~f~~- 975 (1041)
T KOG2020|consen 910 QKIIAVLTDTD--HKAGFTKQVLKLQFLFR---LVESAK--LHTPLLQGNVVHG---NQ---AFLREYIYGLLRPAFPN- 975 (1041)
T ss_pred HHHHHHHhccc--hhhcchHHHHHHHHHHH---HHHhhh--HHHhhccccccch---HH---HHHHHHHHHhhhhhchh-
Confidence 77776553332 44678888876653321 111112 7778889999888 33 88889999999987544
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHhc-C----CChHHHHHHHHHHHhhhcCCchHHhhhhhcccc-cccCCCCC
Q 003136 757 RQVLLSLPCITPQDLLAFEDALTK-T----ASPREQKQHMRSLLVLGTGNNLKALAAQKSVNV-ITNVSTRP 822 (845)
Q Consensus 757 r~vL~~lP~i~~~~l~~f~~~L~~-~----~s~K~qr~~~k~LL~~~~g~~l~~l~~~~~~~v-i~~~~~~~ 822 (845)
++.+.+.+|+..+.. . ...+.-|+ .......|.+.+++ ++..+ +++.++..
T Consensus 976 ---------~~~~~v~~~~~~~~~~~~~~~~~k~~~~d---~~~~e~~~~~~~~l---~~~e~~~~~~r~~~ 1032 (1041)
T KOG2020|consen 976 ---------LTDEQVRAFDIGLFDECKDVSPFKDHVRD---VQIKEFGGQDTSDL---FREEAEIRLLRANQ 1032 (1041)
T ss_pred ---------hchHHHHHHhHHHHHHhcccchhhcchhh---HHHHHhcccchHHH---HHHHhhHHhhhhhc
Confidence 444667777666654 2 22333344 33445677777776 66665 77777665
No 2
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=0.0004 Score=81.26 Aligned_cols=280 Identities=16% Similarity=0.155 Sum_probs=172.5
Q ss_pred HHHhhhccchHHHHHhHHHHHHHHHHhhhccccccccCCCCCcccCCCCCCCCccchhhhhhcccchhhHHHHHHHHHHH
Q 003136 4 QMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQR 83 (845)
Q Consensus 4 ~~L~~t~HpSl~ls~~~l~~W~~llr~~~~k~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~LL~~~~~r 83 (845)
.||++..|----+++...+||...|.. +.|.+ +-++ ++ . .-+..+|+..+++
T Consensus 339 yllq~l~~e~ddit~~ifpFlsdyl~~-LKkl~--------------~ls~------~q--k-----~~l~~illai~kq 390 (980)
T KOG2021|consen 339 YLLQFLNNEFDDITAKIFPFLSDYLAF-LKKLK--------------ALSS------PQ--K-----VPLHKILLAIFKQ 390 (980)
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHH-Hhhcc--------------cccc------hh--h-----ccHHHHHHHHHHH
Confidence 578899999999999999999988776 22211 1000 11 1 3456677777777
Q ss_pred HhhhcCCCCCCCCccccccccCC-ch--hHHHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHH
Q 003136 84 LVKREKAPGTQGPLELWSDDFEG-KG--DFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVM 160 (845)
Q Consensus 84 l~k~~~~~~~~~~~~~~~~DFds-~~--ef~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~w 160 (845)
+-+.+.. +|.++-.+ ++ +|..||+++.-..+.++++.|...++.+.+-+.+.+.+. ..+.+-..
T Consensus 391 icydemy--------~nddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns-----~e~swqev 457 (980)
T KOG2021|consen 391 ICYDEMY--------FNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNS-----KEESWQEV 457 (980)
T ss_pred HhccHHh--------hcccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC-----CcchHHHH
Confidence 7666553 45566322 33 258999999999999999999999999888888776553 11232233
Q ss_pred hhH----HHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHH--HHHhccCCCCchHHHHHHHHHHhhhhhhhcCCCc
Q 003136 161 ESM----QSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLL--RQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDA 234 (845)
Q Consensus 161 ea~----~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~ll--q~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p~~ 234 (845)
|.. +.+-||.-...+. .++++......+ ...+.++ .++.+++ .|++.-.....++-...|....|+.
T Consensus 458 E~Aiylly~lgE~l~~~~~~----~nsgd~s~~~vl-~~~~~ll~tsqv~~h~--h~lVqLlfmE~ivRY~kff~~esq~ 530 (980)
T KOG2021|consen 458 ELAIYLLYNLGECLKNNYFG----LNSGDISTSQVL-FLNELLLMTSQVLAHD--HELVQLLFMELIVRYNKFFSTESQK 530 (980)
T ss_pred HHHHHHHHHHhhcccccccc----ccCccccHHHHH-HHHHHHHHHcccccCC--chHHHHHHHHHHHHHHHHHhcchhh
Confidence 332 2333333111111 122222111111 1112221 2223322 3443333333344444466777888
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHH---------HcCccch
Q 003136 235 VGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQ---------REGRLLR 305 (845)
Q Consensus 235 l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~---------~~~~Ls~ 305 (845)
.|-||+-- +. |.+.+. .-.++|+|+..++-|.-+.--+.+.|+.|.|.+.++.|+ ++..++.
T Consensus 531 ip~vL~aF---ld--~rglhn----~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~ 601 (980)
T KOG2021|consen 531 IPLVLNAF---LD--SRGLHN----KNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTI 601 (980)
T ss_pred hHHHHHHH---cc--chhccc----cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCcccccccc
Confidence 88887655 32 121111 114799999999999999999999999999999999999 3333443
Q ss_pred h-hHHHHHHHHHHH-hc-CCCHHHHHHHHHHHhHHHHH
Q 003136 306 G-EHNLLGEAFLVM-AS-AAGIQQQQEVLAWLLEPLSQ 340 (845)
Q Consensus 306 ~-E~~~L~EaLl~i-s~-~~~~~~q~~~L~~ll~P~~~ 340 (845)
. -+-.++|+.=++ ++ ..+.|+|+.....++.|...
T Consensus 602 fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~ 639 (980)
T KOG2021|consen 602 FDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLIL 639 (980)
T ss_pred ccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHH
Confidence 3 344567766444 33 78899999999999998754
No 3
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.0037 Score=74.81 Aligned_cols=281 Identities=16% Similarity=0.163 Sum_probs=194.5
Q ss_pred HHHHHhhhccchH-----HHHHhHHHHHHHHHHhhh-ccccccccCCCCCcccCCCCCCCCccchhhhhhcccchhhHHH
Q 003136 2 SFQMLGYFQHFKI-----ALHFQSLLFWLALMRDLM-SKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGA 75 (845)
Q Consensus 2 L~~~L~~t~HpSl-----~ls~~~l~~W~~llr~~~-~k~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (845)
.+-++.+|.-|=. ++|..++.||.+|--+.. .+.. +...++.+. ...+.-.
T Consensus 353 v~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e--------------------~~~~~~~i~---~~qIy~q 409 (982)
T KOG2022|consen 353 VQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINE--------------------TQQIKKQIL---SQQIYAQ 409 (982)
T ss_pred HHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhc--------------------cCCcchhHH---HHHHHHH
Confidence 4556666666654 578999999999887722 1211 011111111 1134444
Q ss_pred HHHHHHHHHhhhcCCCCCCCCccccccccCCchhHHHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCch
Q 003136 76 ILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQ 155 (845)
Q Consensus 76 LL~~~~~rl~k~~~~~~~~~~~~~~~~DFds~~ef~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~ 155 (845)
|.+ .++++-..|+. ..+..=.=|+.++|..||+...|..-.+=.+--...+..+...+...+++..+ +..
T Consensus 410 lve----i~l~K~~~Ps~---e~~~~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~---~p~ 479 (982)
T KOG2022|consen 410 LVE----ILLKKLALPSK---EIWLSWSSDSREQFESYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDE---DPD 479 (982)
T ss_pred HHH----HHHHHhcCCCH---HHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCC---Cch
Confidence 444 44555555532 23444445778899999999999988775555555566666666666655422 223
Q ss_pred hhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCC--CchHHHHHHHHHHhhhhhhhcCCC
Q 003136 156 DLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWT--EPPLVVALGHYLDALGPFLKYYPD 233 (845)
Q Consensus 156 ~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~llq~lL~~~~~--dPll~~~~l~~L~~l~~~l~~~p~ 233 (845)
....-|++-+-+++|...+-. .+.. .+.++.+.+-+.+.+ .|-+.+-..+.+.+++-+++.+|-
T Consensus 480 s~~~tEaci~~~~sva~~~~~-------t~~~-------~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~ 545 (982)
T KOG2022|consen 480 SLNRTEACIFQFQSVAEYLGE-------TEST-------WIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPM 545 (982)
T ss_pred HHHHHHHHHHHHHHHHhhcCc-------chhH-------HHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCc
Confidence 455677877777777542211 1111 155666666666666 788888889999999999999999
Q ss_pred chHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHH
Q 003136 234 AVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGE 313 (845)
Q Consensus 234 ~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~E 313 (845)
.+...|+-+|..|. .+ ..--++.+.+-++|+.-+..+.|+.+++.+.+..+++.+.....-+.-|+.
T Consensus 546 ~ln~sl~~L~~~Lh-------~s------k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~ 612 (982)
T KOG2022|consen 546 YLNPSLPLLFQGLH-------NS------KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMK 612 (982)
T ss_pred ccCchHHHHHHHhc-------Cc------hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHH
Confidence 99999999999874 01 112345666999999999999999999999999999999888888888888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhHHHHHhh
Q 003136 314 AFLVMASAAGIQQQQEVLAWLLEPLSQQW 342 (845)
Q Consensus 314 aLl~is~~~~~~~q~~~L~~ll~P~~~~W 342 (845)
++=-+.++--+|.+-..|-.++.|+.++-
T Consensus 613 sIGyvls~~~pEe~~kyl~~lin~il~ql 641 (982)
T KOG2022|consen 613 SIGYVLSRLKPEEIPKYLMKLINPILSQL 641 (982)
T ss_pred HHHHHHHhccHHhHHHHHHHHHHHHHHHH
Confidence 77767776669999999999999998765
No 4
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.076 Score=62.23 Aligned_cols=207 Identities=15% Similarity=0.196 Sum_probs=144.6
Q ss_pred ccCCchhHH--HHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCC
Q 003136 103 DFEGKGDFS--QYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQ 180 (845)
Q Consensus 103 DFds~~ef~--~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~ 180 (845)
|+|+++.|+ |.|+=--.-+-..+.+.+.+-+..+.--+..-+ +++....=||....+-++-.|+-++-..
T Consensus 359 e~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L--------~~~~W~vrEagvLAlGAIAEGcM~g~~p 430 (885)
T KOG2023|consen 359 EDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHL--------SSEEWKVREAGVLALGAIAEGCMQGFVP 430 (885)
T ss_pred ccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHc--------CcchhhhhhhhHHHHHHHHHHHhhhccc
Confidence 344444464 888877777777777788877777766666554 4467777788888888777777775432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcC--CCchHHHHHHHHHHhcCCCCCCCCCCc
Q 003136 181 FGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYY--PDAVGGVISKLFELLTSLPFVFKDPST 258 (845)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~--p~~l~~VL~klf~~l~~~p~~~~~~~~ 258 (845)
+ ... +---+-++| +-+-|+.++.-.=+|+-+++++-.. .++..+||+-++..+. +.+
T Consensus 431 ~-------Lpe----Lip~l~~~L--~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll--------D~N 489 (885)
T KOG2023|consen 431 H-------LPE----LIPFLLSLL--DDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL--------DSN 489 (885)
T ss_pred c-------hHH----HHHHHHHHh--ccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh--------ccc
Confidence 2 111 222233334 5556999888777888888877444 3688888888877553 122
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhcCCCHH-HHHHHHHHHhHH
Q 003136 259 NSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQ-QQQEVLAWLLEP 337 (845)
Q Consensus 259 ~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~~~~~~-~q~~~L~~ll~P 337 (845)
|.+.-+||+++-.+-...-..+.||++.|.++.-.-++ +--..--..||.|.=.++...+.. .+.+.++-++-|
T Consensus 490 ---K~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~--kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPP 564 (885)
T KOG2023|consen 490 ---KKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG--KYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPP 564 (885)
T ss_pred ---HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH--HHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccH
Confidence 68889999999999999999999999999776653333 222333457888888887755443 577889999999
Q ss_pred HHHhhc
Q 003136 338 LSQQWM 343 (845)
Q Consensus 338 ~~~~W~ 343 (845)
+.+.|.
T Consensus 565 Li~KW~ 570 (885)
T KOG2023|consen 565 LIEKWE 570 (885)
T ss_pred HHHHHH
Confidence 999994
No 5
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.4 Score=55.66 Aligned_cols=259 Identities=19% Similarity=0.153 Sum_probs=172.5
Q ss_pred HHHHHhhhccchHHHHHhHHHHHHHHHHhhhccccccccCCCCCcccCCCCCCCCccchhhhhhcccchhhHHHHHHHHH
Q 003136 2 SFQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISF 81 (845)
Q Consensus 2 L~~~L~~t~HpSl~ls~~~l~~W~~llr~~~~k~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~LL~~~~ 81 (845)
++++|.-+.|+-.-|-..|.+||-.+=++.- ++. ++-...+..-.+
T Consensus 293 vellLl~~~h~~~evie~SF~fW~~lse~l~-~~~---------------------------------~~~~~~~frpy~ 338 (559)
T KOG2081|consen 293 VELLLLVAGHNDTEVIEASFNFWYSLSEELT-LTD---------------------------------DDEALGIFRPYF 338 (559)
T ss_pred HHHHHHhccCCchhhhhhhHHhhhhhHHHHh-ccc---------------------------------cHHHHHHhHHHH
Confidence 3578889999999999999999999877721 111 022222333444
Q ss_pred HHHhhhcC----CCCCCCCccccccccCCchhHHHHHhhHHHHHHHHhhc-CchHHHHHHHHHHHHHHhhcccCCCCchh
Q 003136 82 QRLVKREK----APGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASN-KPLVAGVKVSERVMAIINSLLISTMPAQD 156 (845)
Q Consensus 82 ~rl~k~~~----~~~~~~~~~~~~~DFds~~ef~~yR~~~~~iir~~~~~-~P~~a~~~~~~~l~~~l~~~~~~~~~s~~ 156 (845)
.|++..-. .|+ |-.+=.|+..||..||-..+|+++=++.+ --...++.+..++.+ + -.+
T Consensus 339 ~rLvs~l~~h~qlp~------~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e----~------~~~ 402 (559)
T KOG2081|consen 339 LRLVSLLKRHVQLPP------DQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE----N------NAS 402 (559)
T ss_pred HHHHHHHHHHccCCC------ccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc----C------CCc
Confidence 55544322 221 11123455667999999999999976654 344455666655554 1 134
Q ss_pred hHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcCCCchH
Q 003136 157 LAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVG 236 (845)
Q Consensus 157 ~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p~~l~ 236 (845)
.-..||.-++++++++.+.-..+ ++ +...++.+.++...-|+ +.-.+-.+..+.-.+..+|+++-
T Consensus 403 We~~EAaLF~l~~~~~~~~~~e~-------~i-------~pevl~~i~nlp~Q~~~-~~ts~ll~g~~~ew~~~~p~~le 467 (559)
T KOG2081|consen 403 WEEVEAALFILRAVAKNVSPEEN-------TI-------MPEVLKLICNLPEQAPL-RYTSILLLGEYSEWVEQHPELLE 467 (559)
T ss_pred hHHHHHHHHHHHHHhccCCcccc-------ch-------HHHHHHHHhCCccchhH-HHHHHHHHHHHHHHHHhCcHHHH
Confidence 45578899999999876555221 12 55667777777777884 44445567777778899999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHHHHH
Q 003136 237 GVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFL 316 (845)
Q Consensus 237 ~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl 316 (845)
.|++-++..++. +.+-.++...+-++|..--..+.++++++...+..+.+ .++..|-..|..+.-
T Consensus 468 ~v~~~~~~~~~~-------------~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~--~~~~~e~a~l~~~~s 532 (559)
T KOG2081|consen 468 PVLRYIRQGLQL-------------KRLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDS--TQINEEAACLLQGIS 532 (559)
T ss_pred HHHHHHHHHhhh-------------cchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HhccHHHHHHHHHHH
Confidence 999888776541 11556677788888888777888888888777764443 233355555777777
Q ss_pred HHhcCCCHHHHHHHHHHHhHHHHH
Q 003136 317 VMASAAGIQQQQEVLAWLLEPLSQ 340 (845)
Q Consensus 317 ~is~~~~~~~q~~~L~~ll~P~~~ 340 (845)
.+.+..+..+-+.-++++.+|...
T Consensus 533 ~i~~~lp~~k~~~~~~el~~~~l~ 556 (559)
T KOG2081|consen 533 LIISNLPAHKAKIALEELCEPQLR 556 (559)
T ss_pred HHHhcCCHhhhhHHHHHHhhHHHh
Confidence 777777777778888888888754
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=17 Score=45.99 Aligned_cols=193 Identities=16% Similarity=0.142 Sum_probs=115.1
Q ss_pred cccccccCCchhH-HHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccC----CCCchhhHHHhhH--------H
Q 003136 98 ELWSDDFEGKGDF-SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLIS----TMPAQDLAVMESM--------Q 164 (845)
Q Consensus 98 ~~~~~DFds~~ef-~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~----~~~s~~~~~wea~--------~ 164 (845)
++.+.|=.+++|+ .+||.-..-+=|+++++-|...+.-+-+++...+.++.-. .+. ..-...|+. -
T Consensus 310 ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~-Als~i~EGc~~~m~~~l~ 388 (1075)
T KOG2171|consen 310 EWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALL-ALSVIAEGCSDVMIGNLP 388 (1075)
T ss_pred hhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHcccHHHHHHHHH
Confidence 3555455455556 7999999999999999999999999999999998886310 000 000111221 2
Q ss_pred HHHHHHHHHHhcCCC--------CCCCCChHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcC-----
Q 003136 165 SALENVVSAVFDGSN--------QFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYY----- 231 (845)
Q Consensus 165 ~~lE~vl~~~~~~~~--------~~~~~~~~~~~~l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~----- 231 (845)
.++..|++++.+.+. .-+.-+.+-+..+.+...+.+--.|.....|+--.+++.+.-+++..|.-..
T Consensus 389 ~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l 468 (1075)
T KOG2171|consen 389 KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL 468 (1075)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 233333333333110 0000000111122222223333233334456666667777777777776444
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcC
Q 003136 232 PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREG 301 (845)
Q Consensus 232 p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~ 301 (845)
.++++.+++|.|..|. ..++ +.+|-.+.|.+=.+|.+.-..+.||++.+...+...+...
T Consensus 469 ~pYLd~lm~~~l~~L~-------~~~~---~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~ 528 (1075)
T KOG2171|consen 469 EPYLDGLMEKKLLLLL-------QSSK---PYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNA 528 (1075)
T ss_pred HHHHHHHHHHHHHHHh-------cCCc---hhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCC
Confidence 3566677776655443 1223 5788999999999999999999999999988887666654
No 7
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=92.18 E-value=5.6 Score=47.03 Aligned_cols=298 Identities=14% Similarity=0.178 Sum_probs=169.5
Q ss_pred HHHhHHHHHHHHHHhhhcccc-c-cccCCCCCcccCCCC----CCCCccchhhhhhcccchhhHHHHHHHHHHHHhhhcC
Q 003136 16 LHFQSLLFWLALMRDLMSKTK-V-AHSTGDGSTVNNADS----GSGKVDSRKMRILSFLNDDISGAILDISFQRLVKREK 89 (845)
Q Consensus 16 ls~~~l~~W~~llr~~~~k~~-~-~~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~LL~~~~~rl~k~~~ 89 (845)
+-..++..|..+..++-+.-. + ..-|.+....+.|++ +++ .++-++ ..-.+=.+++.+|.-+..++|+|+|.
T Consensus 358 iFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnpn-~~~~~p-LrkhiY~~ilsqLrlvlienMvrPEE 435 (1053)
T COG5101 358 IFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNPN-QDSTKP-LRKHIYIGILSQLRLVLIENMVRPEE 435 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCcc-hhcccc-hHHHHHHHHHHHHHHHHHHcCCCcce
Confidence 456789999999888332211 0 111333322222221 111 111111 11111248889998888999999888
Q ss_pred CC--CCCCCccccccccCCchhHHHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHH
Q 003136 90 AP--GTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSAL 167 (845)
Q Consensus 90 ~~--~~~~~~~~~~~DFds~~ef~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~l 167 (845)
+- +... .+..+ +|-.+.|=-++=+.+.+++=..+.+.-.++=.+..+.+.-++... -..|--.-+..
T Consensus 436 VliVende-gEivR-efvketDtI~lYksmRevLvyLthL~v~Dte~~mi~Klarq~dg~---------EWsw~nlNtLc 504 (1053)
T COG5101 436 VLIVENDE-GEIVR-EFVKETDTIELYKSMREVLVYLTHLIVDDTEKYMIGKLARQLDGK---------EWSWNNLNTLC 504 (1053)
T ss_pred EEEEECCC-cHHHH-HHhccccHhHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHhcCC---------ccchhhHhHHH
Confidence 42 1100 11111 232222223455556777777777777777777666666664331 01122222221
Q ss_pred HHH--HHHHhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCCc--hHHHHHHHHHHhhhhhhhcCCCchHHHHHHHH
Q 003136 168 ENV--VSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEP--PLVVALGHYLDALGPFLKYYPDAVGGVISKLF 243 (845)
Q Consensus 168 E~v--l~~~~~~~~~~~~~~~~~~~~l~~~~~~llq~lL~~~~~dP--ll~~~~l~~L~~l~~~l~~~p~~l~~VL~klf 243 (845)
=++ +||.+. + +.+ ..-+...+..||..|-....+|- .+.+-..-.+...-.|++++=.++..|+.|+|
T Consensus 505 WAIGSISGams------E-~~E-krF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLF 576 (1053)
T COG5101 505 WAIGSISGAMS------E-VNE-KRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLF 576 (1053)
T ss_pred HHHhcccchhh------h-HHH-HHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHH
Confidence 111 111111 1 111 22345556677777766666664 33333222334455689999899999999999
Q ss_pred HHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchH----HHH-HHHHHHHHHc-CccchhhHHHHHHHHHH
Q 003136 244 ELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHM----KDI-ADTMAYLQRE-GRLLRGEHNLLGEAFLV 317 (845)
Q Consensus 244 ~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~l----e~i-~~~v~~L~~~-~~Ls~~E~~~L~EaLl~ 317 (845)
+-+-. .-+ .++--||-.+++|+.+.|-.++-.= |.+ ..++..|... |.|..-++-.+|||...
T Consensus 577 EFMhE--------~HE---GvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~ 645 (1053)
T COG5101 577 EFMHE--------DHE---GVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGM 645 (1053)
T ss_pred HHHhh--------hhh---hHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhH
Confidence 96531 122 3344599999999999877665321 223 4455555544 67999999999999998
Q ss_pred Hhc-CCCHHHHHHHHHHHhHHHHHhhchH
Q 003136 318 MAS-AAGIQQQQEVLAWLLEPLSQQWMQL 345 (845)
Q Consensus 318 is~-~~~~~~q~~~L~~ll~P~~~~W~~~ 345 (845)
+.+ ...-..++.++-.+++-..++|..-
T Consensus 646 vIse~p~~~~~~rlv~dlm~Lpn~aw~ni 674 (1053)
T COG5101 646 VISEVPKTRDYKRLVLDLMDLPNSAWLNI 674 (1053)
T ss_pred HHhccchhhHHHHHHHHHHHhhHHHHHHH
Confidence 877 5566677888888998888899643
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.05 E-value=5.5 Score=50.17 Aligned_cols=200 Identities=17% Similarity=0.172 Sum_probs=126.5
Q ss_pred HHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHH
Q 003136 111 SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQL 190 (845)
Q Consensus 111 ~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~ 190 (845)
.+.|..+.++|-.+++..-.. +| -+.++.++.+. +|+.--.=|+.+.++-.+.. ++... ..
T Consensus 94 ~~vr~k~~dviAeia~~~l~e--~W-Pell~~L~q~~-----~S~~~~~rE~al~il~s~~~-~~~~~----------~~ 154 (1075)
T KOG2171|consen 94 PSVRHKLADVIAEIARNDLPE--KW-PELLQFLFQST-----KSPNPSLRESALLILSSLPE-TFGNT----------LQ 154 (1075)
T ss_pred hHHHHHHHHHHHHHHHhcccc--ch-HHHHHHHHHHh-----cCCCcchhHHHHHHHHhhhh-hhccc----------cc
Confidence 478888888888777765444 44 33333333332 33233334666666655532 22211 11
Q ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcCC-------CchHHHHHHHHHHhcCCCCCCCCCCchHHHH
Q 003136 191 SLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYP-------DAVGGVISKLFELLTSLPFVFKDPSTNSARH 263 (845)
Q Consensus 191 ~l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p-------~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~ 263 (845)
.....+..+++++++ +.++| ++.--++.+.+|..++.+++ +++|++++-+ +...++.++ +
T Consensus 155 ~~~~~l~~lf~q~~~-d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl-------~~~i~~~d~----~ 221 (1075)
T KOG2171|consen 155 PHLDDLLRLFSQTMT-DPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVL-------QEVIQDGDD----D 221 (1075)
T ss_pred hhHHHHHHHHHHhcc-CCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHh-------Hhhhhccch----H
Confidence 223457788888887 67788 88887888888888885443 3444443333 222222222 2
Q ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhcCCC-H-HHHHHHHHHHhHHHHHh
Q 003136 264 ARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAG-I-QQQQEVLAWLLEPLSQQ 341 (845)
Q Consensus 264 ~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~~~~-~-~~q~~~L~~ll~P~~~~ 341 (845)
.=..+--+|+.++...|+.+.|+++.|.+..-+...+..+..+=|+.-.|+++..+-..+ . -.+..+...++-.+.+.
T Consensus 222 ~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~ 301 (1075)
T KOG2171|consen 222 AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAM 301 (1075)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHh
Confidence 224577889999999999999999999999988888999999999999999998875421 1 22333455555555543
Q ss_pred h
Q 003136 342 W 342 (845)
Q Consensus 342 W 342 (845)
-
T Consensus 302 m 302 (1075)
T KOG2171|consen 302 M 302 (1075)
T ss_pred c
Confidence 3
No 9
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=88.07 E-value=35 Score=37.96 Aligned_cols=129 Identities=15% Similarity=0.145 Sum_probs=68.7
Q ss_pred hHHHHHHHhhhcccchhhhhHHHHhHHHHHHHhhhccchhhhHHH-------HHHHHHHHHHhhcccchHhhHHHHHHHH
Q 003136 670 LPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFV-------SKDLFSAIIRGLALESNAVISADLVGLC 742 (845)
Q Consensus 670 ~~~L~~~~~~l~w~Dt~~~~ka~~f~~~Lv~~~~~~~~~~l~~~i-------~~~v~~a~L~~L~~~~~~~~~~~L~~L~ 742 (845)
..++..+..++.=.+...+..++..+..++......+.+...+|. -.++|..+..+.|..|+. .|..++.-.
T Consensus 164 ~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~-~q~~iL~~L 242 (319)
T PF08767_consen 164 KLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFK-LQSQILSNL 242 (319)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHH-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHH-HHHHHHHHH
Confidence 344444444444334444555555555665544332233344444 344444444444554543 344444444
Q ss_pred HHHHHH-h--cCCCc-----------hHHHHHHhC-CCCCHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhhhc
Q 003136 743 REIFIY-M--CDRDP-----------APRQVLLSL-PCITPQDLLAFEDALTKTAS-PREQKQHMRSLLVLGT 799 (845)
Q Consensus 743 ~~iy~~-l--~~~~~-----------~~r~vL~~l-P~i~~~~l~~f~~~L~~~~s-~K~qr~~~k~LL~~~~ 799 (845)
..+-+. . .|..+ ...+.|.+. |+++++.++.|-..|.+... ..+=|.+++|+|-.++
T Consensus 243 f~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFlI~~k 315 (319)
T PF08767_consen 243 FRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENFVQGLFELNNDPEKFKTHLRDFLIQLK 315 (319)
T ss_dssp HHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHT
T ss_pred HHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 433222 1 22211 234555544 99999999999999988655 5666899999987664
No 10
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.06 E-value=67 Score=39.36 Aligned_cols=184 Identities=19% Similarity=0.180 Sum_probs=105.2
Q ss_pred HHHHhhHHHHHHHHhhcCchHHHHHH-------HHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCC
Q 003136 111 SQYRSRLLELVKFVASNKPLVAGVKV-------SERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGG 183 (845)
Q Consensus 111 ~~yR~~~~~iir~~~~~~P~~a~~~~-------~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~ 183 (845)
+|.|.-..+-+--+....|...+..+ ..+|++.+++ ...+-..-.+..-++..+=+++..+.+... .
T Consensus 515 sNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~---~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~---~ 588 (859)
T KOG1241|consen 515 SNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISS---QILSLADRAQLNELQSLLCNTLQSIIRKVG---S 588 (859)
T ss_pred hhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH---HhccHhhHHHHHHHHHHHHHHHHHHHHHcc---c
Confidence 58888777777666677777776554 4445554441 122223334444555556666666666432 1
Q ss_pred CChHHHHHHHHHHHHHHHHHhccCCCCchHHH----HHHHHHHhhhh-hhhcCCCchHHHHHHHHHHhcCCCCCCCCCCc
Q 003136 184 ANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVV----ALGHYLDALGP-FLKYYPDAVGGVISKLFELLTSLPFVFKDPST 258 (845)
Q Consensus 184 ~~~~~~~~l~~~~~~llq~lL~~~~~dPll~~----~~l~~L~~l~~-~l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~ 258 (845)
+-.++.+. +++++-+++.- .+.-..-. .+.+..+.++. |.||-|.+.|-++.-+ . +
T Consensus 589 ~~~~~~d~----iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL----~----------n 649 (859)
T KOG1241|consen 589 DIREVSDQ----IMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGL----S----------N 649 (859)
T ss_pred cchhHHHH----HHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh----h----------c
Confidence 11233343 45555555533 22222111 23345555666 7777766655443222 1 1
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHh
Q 003136 259 NSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMA 319 (845)
Q Consensus 259 ~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is 319 (845)
-.-..+=-.+.-..=++|++--..|+|+.+.+.+..-+-++++.+.+.=|-...+.|==|+
T Consensus 650 ~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIA 710 (859)
T KOG1241|consen 650 FQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIA 710 (859)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHH
Confidence 1112233334445557888899999999999999998888898888888877776665444
No 11
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=84.24 E-value=20 Score=36.17 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=80.6
Q ss_pred CCCCchHHHHHHHHHHhhhh--hhhcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhh-ccccc
Q 003136 207 KWTEPPLVVALGHYLDALGP--FLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKT-SDKSI 283 (845)
Q Consensus 207 ~~~dPll~~~~l~~L~~l~~--~l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~-~~~~l 283 (845)
+-.||.++..-+.+|+-|.. ++|.++.++..++ .++. |+. .++|..|...|..+..+ .|+.+
T Consensus 35 ~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l----~~l~-------D~~----~~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 35 RDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRIL----KLLV-------DEN----PEIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHH----HHHc-------CCC----HHHHHHHHHHHHHHHHhccchHH
Confidence 55678888876666666554 5566655545543 3332 222 36888999999999999 99999
Q ss_pred cchHHHHHHHHHHHHHcC---ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHHhh
Q 003136 284 LPHMKDIADTMAYLQREG---RLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQW 342 (845)
Q Consensus 284 ~p~le~i~~~v~~L~~~~---~Ls~~E~~~L~EaLl~is~~~~~~~q~~~L~~ll~P~~~~W 342 (845)
..+|..+..........+ ..+..++...+.+|+-..+. -.++.+.++.+..-+...+
T Consensus 100 ~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~--d~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 100 YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK--DKQKESLVEKLCQRFLNAV 159 (178)
T ss_pred HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHHc
Confidence 888777766555322222 57788888999888855432 4556667788887777777
No 12
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=81.22 E-value=9.4 Score=40.68 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHHhcCC-CCCCCCCCchHHHHHHHHH
Q 003136 190 LSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSL-PFVFKDPSTNSARHARLQI 268 (845)
Q Consensus 190 ~~l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p~~l~~VL~klf~~l~~~-p~~~~~~~~~~v~~~Rr~a 268 (845)
..+......+++.||.+=..+++.-..+..++.+|+..+|.+|.++..|+.-+.+.=... |........-.++.+||..
T Consensus 106 ~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~l 185 (239)
T PF11935_consen 106 QQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTL 185 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHH
Confidence 356677778888888665555555556667889999999999999999988774421111 1112233556899999999
Q ss_pred HHHHHHHHhhccccccchHHHHHHHHH
Q 003136 269 CTSFIRIAKTSDKSILPHMKDIADTMA 295 (845)
Q Consensus 269 ~s~Lirla~~~~~~l~p~le~i~~~v~ 295 (845)
=..|+.+-+..+.. |+-+.|.+...
T Consensus 186 k~~l~~llk~~~~~--~~~~~i~~~L~ 210 (239)
T PF11935_consen 186 KIFLLHLLKHPASS--PFQGRITQALT 210 (239)
T ss_dssp HHHHHHHHTSGGGG--GGHHHHHHHHH
T ss_pred HHHHHHHHCCCCch--hhHHHHHHHHH
Confidence 88888887764443 77776666555
No 13
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=79.17 E-value=9.4 Score=34.82 Aligned_cols=40 Identities=25% Similarity=0.471 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcC
Q 003136 262 RHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREG 301 (845)
Q Consensus 262 ~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~ 301 (845)
..+|..||.+|..+++.....++|+|..|.+.+-++....
T Consensus 41 ~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 41 SRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3789999999999999999999999999988887655543
No 14
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=75.84 E-value=16 Score=43.98 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=84.6
Q ss_pred HHHHHHHHhccCC--CCchHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHHhcCCCC---CCCCCCchHHHHHHHHHHH
Q 003136 196 FEGLLRQLLSLKW--TEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPF---VFKDPSTNSARHARLQICT 270 (845)
Q Consensus 196 ~~~llq~lL~~~~--~dPll~~~~l~~L~~l~~~l~~~p~~l~~VL~klf~~l~~~p~---~~~~~~~~~v~~~Rr~a~s 270 (845)
.+.|++.+|+++| .++..+...++ -+..++..++.++..||+++.+.+...+. ...+......+....++..
T Consensus 71 ~~~LV~ail~~~W~~~~~~~v~~y~~---Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~ 147 (563)
T PF05327_consen 71 CKQLVEAILSLNWLGRDEDFVEAYIQ---FLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHD 147 (563)
T ss_dssp CHHHHHHHHT-TGGGS-HHHHHHHHH---HHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH---------------HHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHH
Confidence 3478888888888 78877766444 34445666788999999999776552211 1111223345667778889
Q ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHHh
Q 003136 271 SFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQ 341 (845)
Q Consensus 271 ~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~~~~~~~q~~~L~~ll~P~~~~ 341 (845)
.|.+|.+..|...--..+.+.+..+ -.+-+..+++.+...++-++..+ ++-+...|+-+++-+.+.
T Consensus 148 ~L~~Il~lvP~s~~~L~~~l~~~FP----~~~~~~~~~~~Yv~NlL~l~~Y~-P~L~~~Il~lIi~rLi~i 213 (563)
T PF05327_consen 148 ALQKILRLVPTSPSFLIPILVQNFP----HKRKSKDEHVNYVRNLLRLTEYC-PELRSDILSLIIERLIKI 213 (563)
T ss_dssp HHHHHHHH-GGGHHHHHHHHHHTS------TTS-HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCc----CCCCChHHHHHHHHHHHHHHcch-HHHHHHHHHHHHHHHHHH
Confidence 9999999988876665555666555 34577888888999999998855 667788888888877653
No 15
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.41 E-value=27 Score=41.91 Aligned_cols=122 Identities=18% Similarity=0.291 Sum_probs=75.9
Q ss_pred HHHHHHHHhc-cCCCCchHHHHHHHHHHhhhhhhhcCCCchH----HHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHH
Q 003136 196 FEGLLRQLLS-LKWTEPPLVVALGHYLDALGPFLKYYPDAVG----GVISKLFELLTSLPFVFKDPSTNSARHARLQICT 270 (845)
Q Consensus 196 ~~~llq~lL~-~~~~dPll~~~~l~~L~~l~~~l~~~p~~l~----~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s 270 (845)
++-++-.+|. ++-..|.|++.-+-|++.|-. .+++.+- +.|+.+|..-+ + ..-++|+..|.
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~---~~~qal~~~iD~Fle~lFalan-------D----~~~eVRk~vC~ 237 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII---IQTQALYVHIDKFLEILFALAN-------D----EDPEVRKNVCR 237 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheee---cCcHHHHHHHHHHHHHHHHHcc-------C----CCHHHHHHHHH
Confidence 4455555552 344589999987777776543 3444433 34555555321 1 22489999999
Q ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHH--HHHHHHHhc-CCCHHHHHHHHHHHh
Q 003136 271 SFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLL--GEAFLVMAS-AAGIQQQQEVLAWLL 335 (845)
Q Consensus 271 ~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L--~EaLl~is~-~~~~~~q~~~L~~ll 335 (845)
+|+-+-.-.|+.+.||+.+|.+-|- ...+-. -|.++| .||.++++- .-.-+.-+.+|..++
T Consensus 238 alv~Llevr~dkl~phl~~IveyML---~~tqd~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kli 301 (885)
T KOG2023|consen 238 ALVFLLEVRPDKLVPHLDNIVEYML---QRTQDV-DENVALEACEFWLALAEQPICKEVLQPYLDKLI 301 (885)
T ss_pred HHHHHHHhcHHhcccchHHHHHHHH---HHccCc-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Confidence 9999999999999999988766554 333322 333665 688888875 323333344444443
No 16
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.58 E-value=20 Score=45.75 Aligned_cols=132 Identities=20% Similarity=0.101 Sum_probs=79.8
Q ss_pred CCchHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccch-H
Q 003136 209 TEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPH-M 287 (845)
Q Consensus 209 ~dPll~~~~l~~L~~l~~~l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~-l 287 (845)
+.|..+-.-++.|+....+--...+...++=-|-|..-...+....++-.++.+.+|.+-++.+|.|++.-=....|. +
T Consensus 57 ~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i 136 (1041)
T KOG2020|consen 57 TNPILKYFALQLLENVIKFRWNSLPVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFI 136 (1041)
T ss_pred CCchhheeeHHHHHHHHHHhcccCCccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhh
Confidence 466666666888887777554443344444333333111122222333466899999999999999999943333343 5
Q ss_pred HHHHHHHHHHHHcCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHH
Q 003136 288 KDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQ 340 (845)
Q Consensus 288 e~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~~~~~~~q~~~L~~ll~P~~~ 340 (845)
..+.+....-.....++......|.|-+...++..-.+++...|...+...-+
T Consensus 137 ~dl~~~s~~s~~~~el~m~Il~lLsEdvf~~ss~~~~q~~~~il~~~~~~~f~ 189 (1041)
T KOG2020|consen 137 PDLAQSSKTSETVCELSMIILLLLSEEVFDFSSSELTQQKIIILKNLLENEFQ 189 (1041)
T ss_pred hhHHHHhhcCcccchHHHHHHHHHHHHHhcccchHHHhhhHHHHHHHhhHHHH
Confidence 55555554222223466666677777777776666667777778877765433
No 17
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.54 E-value=1.6e+02 Score=36.08 Aligned_cols=191 Identities=17% Similarity=0.116 Sum_probs=101.3
Q ss_pred HhhHHHHHHHHHHHHhcCCCCCCCC-ChHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcCCCchHHH
Q 003136 160 MESMQSALENVVSAVFDGSNQFGGA-NSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGV 238 (845)
Q Consensus 160 wea~~~~lE~vl~~~~~~~~~~~~~-~~~~~~~l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p~~l~~V 238 (845)
--||+.+.||| +.+...+...+.. .....+.+.+.+-.++ +-.||.|.=. -|-+++-.++.+|.++..-
T Consensus 268 T~AmSLlYECv-NTVVa~s~s~g~~d~~asiqLCvqKLr~fi------edsDqNLKYl---gLlam~KI~ktHp~~Vqa~ 337 (877)
T KOG1059|consen 268 TVAMSLLYECV-NTVVAVSMSSGMSDHSASIQLCVQKLRIFI------EDSDQNLKYL---GLLAMSKILKTHPKAVQAH 337 (877)
T ss_pred hHHHHHHHHHH-HHheeehhccCCCCcHHHHHHHHHHHhhhh------hcCCccHHHH---HHHHHHHHhhhCHHHHHHh
Confidence 45888999998 7777765433321 2222233333343333 6789987733 3455667889998888877
Q ss_pred HHHHHHHhcCCCCC-------------CCCCCc------------hHHHHHHHHHHHHHHHHHhhccccccchHHHHHHH
Q 003136 239 ISKLFELLTSLPFV-------------FKDPST------------NSARHARLQICTSFIRIAKTSDKSILPHMKDIADT 293 (845)
Q Consensus 239 L~klf~~l~~~p~~-------------~~~~~~------------~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~ 293 (845)
.+-|+.+|.---.. .++.-. .+..+-|-...+.+|.||...--.....||=....
T Consensus 338 kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsV 417 (877)
T KOG1059|consen 338 KDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSV 417 (877)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Confidence 77777776521000 011100 12236677788889999998555545555433332
Q ss_pred HHHHHHcCc-----------------cchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHhHHHHHhhchHhHhhhhcCC
Q 003136 294 MAYLQREGR-----------------LLRGEHNLLGEAFLVMAS--AAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSE 354 (845)
Q Consensus 294 v~~L~~~~~-----------------Ls~~E~~~L~EaLl~is~--~~~~~~q~~~L~~ll~P~~~~W~~~e~~~~~lss 354 (845)
+-+|-+=.. +-.+..-+..+.-.++.+ ..+-.++...+-++|-- .+|+-.|+.. .+.+
T Consensus 418 lveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~A--aaWi~GEyse-~ven 494 (877)
T KOG1059|consen 418 LVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYA--AAWILGEYSE-FVEN 494 (877)
T ss_pred HHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHH--HHHHHHHHHH-HhhC
Confidence 222222111 111111111111111221 22334455555555533 5898888876 6777
Q ss_pred HHHHHHHhc
Q 003136 355 PLGLVRLCS 363 (845)
Q Consensus 355 ~~~f~~~~g 363 (845)
|.+.+..+-
T Consensus 495 ~~~~leaml 503 (877)
T KOG1059|consen 495 PNDTLEAML 503 (877)
T ss_pred HHHHHHHHh
Confidence 777766654
No 18
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.07 E-value=4e+02 Score=33.96 Aligned_cols=273 Identities=13% Similarity=0.190 Sum_probs=145.3
Q ss_pred ccccccccCCchhHHHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhc
Q 003136 97 LELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFD 176 (845)
Q Consensus 97 ~~~~~~DFds~~ef~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~ 176 (845)
.||.+.=||=-+||.+=+.-..+.+-.+++++=.+.++.+.+-+..+|....+.+.+-..+.+-|+....+-++.+-+.+
T Consensus 372 ~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K 451 (1010)
T KOG1991|consen 372 YEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLK 451 (1010)
T ss_pred HHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHcc
Confidence 55666666666666677777888888999999788888888888888887665555556778889988888888765555
Q ss_pred CCCCCCCC-----------ChHHHHHHHH-HHHHHHHHHhccCCCCchHHHHHHHHHH-----------------hhhhh
Q 003136 177 GSNQFGGA-----------NSEVQLSLSR-IFEGLLRQLLSLKWTEPPLVVALGHYLD-----------------ALGPF 227 (845)
Q Consensus 177 ~~~~~~~~-----------~~~~~~~l~~-~~~~llq~lL~~~~~dPll~~~~l~~L~-----------------~l~~~ 227 (845)
.+ .|.+. .+....+..+ .-=..+.+.=+.+++||.+.+..+++.- |+-+|
T Consensus 452 ~s-~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~f 530 (1010)
T KOG1991|consen 452 KS-PYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSF 530 (1010)
T ss_pred CC-chHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHH
Confidence 33 12110 0000011111 1112334444578888877665544321 22233
Q ss_pred hhcC-------CCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH----H
Q 003136 228 LKYY-------PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMA----Y 296 (845)
Q Consensus 228 l~~~-------p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~----~ 296 (845)
+.+. .+.++++++++|.+.. ..+.++. ...+-++-..++.-+.|+--.+++.+. +
T Consensus 531 I~~~~~~~e~~~~hvp~~mq~lL~L~n-------e~End~L-------t~vme~iV~~fseElsPfA~eL~q~La~~F~k 596 (1010)
T KOG1991|consen 531 ISNQEQADEKVSAHVPPIMQELLKLSN-------EVENDDL-------TNVMEKIVCKFSEELSPFAVELCQNLAETFLK 596 (1010)
T ss_pred HhcchhhhhhHhhhhhHHHHHHHHHHH-------hcchhHH-------HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Confidence 3322 2345566666666432 1122222 223455666778888887766655443 2
Q ss_pred HHHc----CccchhhHHHHHHHHHHHhc-CCCHHHHHHHH---HHHhHHHHHhhchHhHhhhhcCCHHHHHHHhc-----
Q 003136 297 LQRE----GRLLRGEHNLLGEAFLVMAS-AAGIQQQQEVL---AWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCS----- 363 (845)
Q Consensus 297 L~~~----~~Ls~~E~~~L~EaLl~is~-~~~~~~q~~~L---~~ll~P~~~~W~~~e~~~~~lss~~~f~~~~g----- 363 (845)
+.+. ....+.-.++=+..|=.|++ -...+...+++ +-++-|+..--.+.+.+. +......|+..+-
T Consensus 597 ~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~d-fyeE~~ei~~~~t~~~~~ 675 (1010)
T KOG1991|consen 597 VLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITD-FYEELLEIVSSLTFLSKE 675 (1010)
T ss_pred HHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhhhhhhhcc
Confidence 2221 11333333333334444443 33444444444 335555554444443333 2222222222221
Q ss_pred CCcccchhHhhHHHHHHHHHhcccc
Q 003136 364 DTSFMWSLFHTVTFFERALKRSGIR 388 (845)
Q Consensus 364 ~~~~~~~~~~~v~~~~~~Lkr~~~~ 388 (845)
-.+.+|.+++ .+..+++..|+.
T Consensus 676 Isp~mW~ll~---li~e~~~~~~~d 697 (1010)
T KOG1991|consen 676 ISPIMWGLLE---LILEVFQDDGID 697 (1010)
T ss_pred cCHHHHHHHH---HHHHHHhhhhHH
Confidence 2346899888 566667766543
No 19
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=62.14 E-value=2.2e+02 Score=33.31 Aligned_cols=232 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHH
Q 003136 233 DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLG 312 (845)
Q Consensus 233 ~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~ 312 (845)
+.+..+|+.+|..+. +....+.. ...-.+.|+.....+.+.|+...+.+++.
T Consensus 22 p~~~~ll~~Lf~~i~------~~~s~ENe-----ylMk~iMRvl~~~~e~~~p~~~~il~~L~----------------- 73 (435)
T PF03378_consen 22 PFAQQLLQNLFALIE------KPGSAENE-----YLMKCIMRVLSVLQEDILPIAVEILQHLT----------------- 73 (435)
T ss_dssp CCHHHHHHHHHHHHH------TT-STC-H-----HHHHHHHHHHHHSTTTTGGGHHHHHHHHH-----------------
T ss_pred hhHHHHHHHHHHHHh------cCCCccch-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----------------
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhHHHHHhhchHhHhhhhcCCHHHHHHHhcCCcccchhHhhHHHHHHHHHhcccccccc
Q 003136 313 EAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANL 392 (845)
Q Consensus 313 EaLl~is~~~~~~~q~~~L~~ll~P~~~~W~~~e~~~~~lss~~~f~~~~g~~~~~~~~~~~v~~~~~~Lkr~~~~~~~~ 392 (845)
+-+-.++...+--+=.+++=+-++-+...=++..-.. +..++..|=
T Consensus 74 ~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~-------------------------v~~~E~~L~--------- 119 (435)
T PF03378_consen 74 AILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEA-------------------------VSQFEEALF--------- 119 (435)
T ss_dssp HHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH----------------------------HHHHHHH---------
T ss_pred HHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhH-------------------------HHHHHHHHH---------
Q ss_pred ccccCCCCCcccccchhhhhhhhhhHHHHHHHHHHhccCccccCcCcHHHHHHccCCHHHHhhhcCCCCCCCcccccccc
Q 003136 393 NLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFA 472 (845)
Q Consensus 393 ~s~~~~~~~~~~~~P~~~~i~~iLP~lL~Llr~~h~l~~P~~~~~Lp~~~~~~~~~~~~Er~~~lG~~~~~~sk~~~~~~ 472 (845)
|.+.+-+...+....|++++++..+..++. .+.+|+.|..++....+...|.
T Consensus 120 ---------P~f~~ILq~dV~EF~PYvfQIla~Lle~~~---~~~~p~~y~~L~~~Ll~p~lWe---------------- 171 (435)
T PF03378_consen 120 ---------PPFQEILQQDVQEFIPYVFQILAQLLELRP---SSPLPDAYKQLFPPLLSPALWE---------------- 171 (435)
T ss_dssp ---------HHHHHHHHTT-TTTHHHHHHHHHHHHHHSS-----S--TTTGGGHHHHTSGGGGG----------------
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCCcHHHHHHHHHHcCcchhc----------------
Q ss_pred CCCccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCcccccCCCchh-HHHHHhccCCCCchhhHHHHHHHHHH
Q 003136 473 DGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSATIGDPFFKSLDSGS-VVVALMENIQSMEFRHIRQLVHSVLI 551 (845)
Q Consensus 473 d~~~~~~~~~~~~~~~~~~~r~~l~~~Re~~Y~ilg~~~~l~~~FY~~~~l~~-l~~alf~~l~~l~~~~lr~ll~~~vr 551 (845)
.+++.-.+=..|...=+-+-..+..-..+..-+ . ...-+-+......-..+ +.
T Consensus 172 ------------~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iL-------gvFQkLi~sk~~D~~gF~L-------L~ 225 (435)
T PF03378_consen 172 ------------RRGNIPALVRLLQAYIKKDPSFIVANNQLEPIL-------GVFQKLIASKANDHYGFDL-------LE 225 (435)
T ss_dssp ------------STTTHHHHHHHHHHHHHHHGGG----S-CHHHH-------HHHHHHHT-TTCHHHHHHH-------HH
T ss_pred ------------cCCCcCcHHHHHHHHHHhCchhhcchhhHHHHH-------HHHHHHHCCCCcchHHHHH-------HH
Q ss_pred hhhccCChhhHHHHHHHHhHHHHHHHHHHHHhh
Q 003136 552 HMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSS 584 (845)
Q Consensus 552 plv~~CP~~~~~~~l~plL~~lf~~~~~rL~~~ 584 (845)
-+|.+||.+.++.|+.+++.-+|. ||..+
T Consensus 226 ~iv~~~p~~~l~~yl~~I~~lll~----RLq~s 254 (435)
T PF03378_consen 226 SIVENLPPEALEPYLKQIFTLLLT----RLQSS 254 (435)
T ss_dssp HHHHHS-HHHHGGGHHHHHHHHHH----HHHHC
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHH----HHhhC
No 20
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=61.18 E-value=1.8e+02 Score=28.99 Aligned_cols=137 Identities=17% Similarity=0.093 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHHHHhc-c-C
Q 003136 130 LVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLS-L-K 207 (845)
Q Consensus 130 ~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~llq~lL~-~-~ 207 (845)
....+....|+.+.+++. .++..|.|....--.| ..+. | +.+.+....|++.+++ + +
T Consensus 20 ~~~l~~l~~ri~~LL~s~-------~~~~rw~G~~Ll~~~~-~~~~-~------------e~l~~~~~~W~~~Ll~~L~~ 78 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSK-------SAYSRWAGLCLLKVTV-EQCS-W------------EILLSHGSQWLRALLSILEK 78 (165)
T ss_pred HHHHHHHHHHHHHHhCCC-------ChhhHHHHHHHHHHHH-HHhh-H------------HHHHHHHHHHHHHHHHHHcC
Confidence 556677788888887664 5777898776544333 3211 1 2222334455554441 1 2
Q ss_pred CCCchHHHHHHHHHHhhhhhhhcCCCchHHH----HHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccc
Q 003136 208 WTEPPLVVALGHYLDALGPFLKYYPDAVGGV----ISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSI 283 (845)
Q Consensus 208 ~~dPll~~~~l~~L~~l~~~l~~~p~~l~~V----L~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l 283 (845)
..+|..+...+.++..++.....+|++.-.+ |-++...+..+..+ -...-.|...|-.+=..||..+
T Consensus 79 ~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~---------~~~~~~~l~~L~~ll~~~ptt~ 149 (165)
T PF08167_consen 79 PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD---------SSCPETALDALATLLPHHPTTF 149 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc---------cccHHHHHHHHHHHHHHCCccc
Confidence 4455778888888999999888888766544 44444433321110 2444568888888888999999
Q ss_pred cchHHHHHHHHHH
Q 003136 284 LPHMKDIADTMAY 296 (845)
Q Consensus 284 ~p~le~i~~~v~~ 296 (845)
-||..++...+-.
T Consensus 150 rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 150 RPFANKIESALLS 162 (165)
T ss_pred cchHHHHHHHHHH
Confidence 9998888666543
No 21
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=60.33 E-value=4.5e+02 Score=33.28 Aligned_cols=106 Identities=16% Similarity=0.052 Sum_probs=68.1
Q ss_pred HHHHhccCCCCchHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhc
Q 003136 200 LRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTS 279 (845)
Q Consensus 200 lq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~ 279 (845)
+...+.++- .|-++-+.+-.+.-|+.-...+|++....|++...+++ +. .+..-.++.+|+.|+.. .
T Consensus 454 ~~~~l~~~e-~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~--~~---~~~~~ki~a~~~~~~~~-------~ 520 (1005)
T KOG2274|consen 454 IDNGLVYQE-SPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALT--MD---VPPPVKISAVRAFCGYC-------K 520 (1005)
T ss_pred HHhhccccc-CHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhc--cC---CCCchhHHHHHHHHhcc-------C
Confidence 334444443 45555466666665555556677777777777766554 12 22333456667666655 7
Q ss_pred cccccchHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhc
Q 003136 280 DKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS 320 (845)
Q Consensus 280 ~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~ 320 (845)
++.+.|..++|.+.+.+|.+ +-+..=.++|+|+|-.+..
T Consensus 521 ~~vl~~~~p~ild~L~qlas--~~s~evl~llmE~Ls~vv~ 559 (1005)
T KOG2274|consen 521 VKVLLSLQPMILDGLLQLAS--KSSDEVLVLLMEALSSVVK 559 (1005)
T ss_pred ceeccccchHHHHHHHHHcc--cccHHHHHHHHHHHHHHhc
Confidence 88899999999888876654 4566667888888877654
No 22
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=59.44 E-value=51 Score=33.25 Aligned_cols=104 Identities=17% Similarity=0.298 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhhcCCcccccCCCchhHHHHHhccCCCCchhhHHHHHHHHHHhhhccCChhhHHHHHHHHhHHHHHHH
Q 003136 498 GVRDSGYNVLGLSATIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHC 577 (845)
Q Consensus 498 ~~Re~~Y~ilg~~~~l~~~FY~~~~l~~l~~alf~~l~~l~~~~lr~ll~~~vrplv~~CP~~~~~~~l~plL~~lf~~~ 577 (845)
.+|-+||..++.+- +..+|.+ ++..+.+.+..++.- ++..|.+-+..+.-++..||...... +..+..++=..+
T Consensus 42 elRK~ayE~lytlL--d~~~~~~-~~~~~~~~v~~GL~D--~~DIk~L~~~~l~kl~~~~p~~v~~~-Ld~l~~~l~~~L 115 (169)
T PF08623_consen 42 ELRKAAYECLYTLL--DTCLSRI-DISEFLDRVEAGLKD--EHDIKMLCHLMLSKLAQLAPEEVLQR-LDSLVEPLRKTL 115 (169)
T ss_dssp HHHHHHHHHHHHHH--HSTCSSS--HHHHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-HHHHHHC-CTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHhC-CHHHHHHHHHhhcCC--cHHHHHHHHHHHHHHHHhCHHHHHHH-HHHHHHHHHHHh
Confidence 45556666665552 2235555 355566777666654 67788888888999999999888666 566777776666
Q ss_pred HHHHHhhHHHhhhhhcCCchhHHHHhhHHHHHHhHHHHHHHHHH
Q 003136 578 QQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTM 621 (845)
Q Consensus 578 ~~rL~~~W~~i~~~~~~~~~~eE~leE~lLR~LTre~~~ll~~~ 621 (845)
..++. ++..++|+=. ..++-|.+++.+..+
T Consensus 116 ~~k~k-----------~~AvkQE~Ek---~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 116 SKKLK-----------ENAVKQEIEK---QQELIRSVLRAVKAL 145 (169)
T ss_dssp H---------------TTS-HHHHHH---HHHHHHHHHHHHHHH
T ss_pred hccCC-----------CCcccccHHH---HHHHHHHHHHHHHHH
Confidence 66664 3445555311 135667777777766
No 23
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.73 E-value=50 Score=40.14 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=84.5
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHH
Q 003136 232 PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLL 311 (845)
Q Consensus 232 p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L 311 (845)
|++..-+-+-+|..|.+ ..--+|++|...+-|++-+||+.+-|.|+.+.+..+ .
T Consensus 139 pdLARDLa~Dv~tLL~s-----------skpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLe----D----------- 192 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNS-----------SKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLE----D----------- 192 (877)
T ss_pred chhhHHHHHHHHHHHhc-----------CchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhcc----C-----------
Confidence 44555555666666541 112579999999999999999999999999988775 1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHhHHHHHhhchHhHhhhhcCCHHHHHHHhcCCcccchhHhhHHHHHHHHHhccccccc
Q 003136 312 GEAFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKAN 391 (845)
Q Consensus 312 ~EaLl~is~~~~~~~q~~~L~~ll~P~~~~W~~~e~~~~~lss~~~f~~~~g~~~~~~~~~~~v~~~~~~Lkr~~~~~~~ 391 (845)
+|+..|..-..-|=+= ....-+ +++.=...|-.++.+..++|.+...+..|+.. ++-
T Consensus 193 ----------pDp~V~SAAV~VICEL-----ArKnPk-nyL~LAP~ffkllttSsNNWmLIKiiKLF~aL-----tpl-- 249 (877)
T KOG1059|consen 193 ----------PDPSVVSAAVSVICEL-----ARKNPQ-NYLQLAPLFYKLLVTSSNNWVLIKLLKLFAAL-----TPL-- 249 (877)
T ss_pred ----------CCchHHHHHHHHHHHH-----HhhCCc-ccccccHHHHHHHhccCCCeehHHHHHHHhhc-----ccc--
Confidence 2333222222222111 111112 36665577888888888999999988888763 010
Q ss_pred cccccCCCCCcccccchhhhhhhhhhHHHHHHHHHHhc
Q 003136 392 LNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSI 429 (845)
Q Consensus 392 ~~s~~~~~~~~~~~~P~~~~i~~iLP~lL~Llr~~h~l 429 (845)
.|- .-..++|+|.-|++.-||.
T Consensus 250 --------------EPR--LgKKLieplt~li~sT~Am 271 (877)
T KOG1059|consen 250 --------------EPR--LGKKLIEPITELMESTVAM 271 (877)
T ss_pred --------------Cch--hhhhhhhHHHHHHHhhHHH
Confidence 111 2356788888877766653
No 24
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=46.84 E-value=4.9e+02 Score=29.73 Aligned_cols=100 Identities=12% Similarity=0.162 Sum_probs=60.9
Q ss_pred HHHHHhhhccchhhhHHHHHHHHHHHHHhhcccchHhhHHHHHHHHHHHHH-HhcCCCchHHHHHHhCCCCCHHHHHHHH
Q 003136 697 AVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFI-YMCDRDPAPRQVLLSLPCITPQDLLAFE 775 (845)
Q Consensus 697 ~Lv~~~~~~~~~~l~~~i~~~v~~a~L~~L~~~~~~~~~~~L~~L~~~iy~-~l~~~~~~~r~vL~~lP~i~~~~l~~f~ 775 (845)
++.+..+.-++..-..-.+.++++-++++-+...-.+....+-+.++..-. ++.--+...-++|..+-.++++-|....
T Consensus 260 ~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~lV~~Li 339 (373)
T PF14911_consen 260 SLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQLVISLI 339 (373)
T ss_pred HHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHHHHHHH
Confidence 444444444545566678889999888887744433344444444444433 2332334457788888888888777666
Q ss_pred HHHhc----------CCChHHHHHHHHHHHh
Q 003136 776 DALTK----------TASPREQKQHMRSLLV 796 (845)
Q Consensus 776 ~~L~~----------~~s~K~qr~~~k~LL~ 796 (845)
..+.. ...+..+|....+|+.
T Consensus 340 p~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~ 370 (373)
T PF14911_consen 340 PTIRQSLKDSERKRGLGRDVALRKALSRLLS 370 (373)
T ss_pred HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 66644 2345777887777765
No 25
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=46.79 E-value=92 Score=34.64 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCchHHHHH---H--hCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhcCC
Q 003136 733 VISADLVGLCREIFIYMCDRDPAPRQVL---L--SLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGN 801 (845)
Q Consensus 733 ~~~~~L~~L~~~iy~~l~~~~~~~r~vL---~--~lP~i~~~~l~~f~~~L~~~~s~K~qr~~~k~LL~~~~g~ 801 (845)
+.......++...|..+|......-.++ . .+|+.+.+++..+.+++.-..++++..+.|.+++..+.+.
T Consensus 221 ~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~~~~i~~l~~rf~l~~se~~a~~~~~~lI~~s~~~ 294 (311)
T cd05167 221 TPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFRGDTIKNLRQRFAPEKSEREAAEFMLSLIAESYEK 294 (311)
T ss_pred hhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3445667778888888887666554433 2 6899999999999999988889999999999999988775
No 26
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=45.14 E-value=57 Score=37.14 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=74.3
Q ss_pred ccccccccCCchhHHHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhc
Q 003136 97 LELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFD 176 (845)
Q Consensus 97 ~~~~~~DFds~~ef~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~ 176 (845)
.||.+.|||+ +|+.+=|+-..+.+|..+..++......+.+.++..+...... .+.....=|+...++-++- .+
T Consensus 212 ~EYIrrd~e~-sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~--~~~~w~~KD~Al~Li~ala---~k 285 (370)
T PF08506_consen 212 EEYIRRDLEG-SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASN--PSNNWRSKDGALYLIGALA---SK 285 (370)
T ss_dssp HHHHHHHSCS-S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTT-HHHHHHHHHHHHHHH---BS
T ss_pred HHHHHhhccc-cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhC--CcccHHHHHHHHHHHHHHH---hh
Confidence 7899999998 7899999999999999999999988888888888887743211 1122234455555554442 23
Q ss_pred CCCCCC---CC-Ch-HHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHHh
Q 003136 177 GSNQFG---GA-NS-EVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELL 246 (845)
Q Consensus 177 ~~~~~~---~~-~~-~~~~~l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p~~l~~VL~klf~~l 246 (845)
...... .. +. ++.+-+.+-+ +..|-.-..+.|.|+..-+.++..|-..+. ++.+..++.-+...|
T Consensus 286 ~~t~~~Gvt~~~~~v~v~~Ff~~~v---~peL~~~~~~~piLka~aik~~~~Fr~~l~--~~~l~~~~~~l~~~L 355 (370)
T PF08506_consen 286 GSTTKSGVTQTNELVDVVDFFSQHV---LPELQPDVNSHPILKADAIKFLYTFRNQLP--KEQLLQIFPLLVNHL 355 (370)
T ss_dssp S--BTTB-S-B-TTS-HHHHHHHHT---CHHHH-SS-S-HHHHHHHHHHHHHHGGGS---HHHHHHHHHHHHHHT
T ss_pred hccccCCcccccccccHHHHHHHHh---HHHhcccCCCCcchHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHHh
Confidence 221111 10 11 2222111111 111222335678998887777777766543 234444444443333
No 27
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=44.30 E-value=69 Score=38.34 Aligned_cols=80 Identities=20% Similarity=0.355 Sum_probs=53.8
Q ss_pred Hhhhh-hhhcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHc
Q 003136 222 DALGP-FLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQRE 300 (845)
Q Consensus 222 ~~l~~-~l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~ 300 (845)
+.|-+ |++++|++--..++.++.+.. + +. ..+|.+|.-.|-.+|+..|+ |...+++++.||+++
T Consensus 43 aq~I~kffk~FP~l~~~Ai~a~~DLcE-------D-ed---~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL~t 107 (556)
T PF05918_consen 43 AQFIPKFFKHFPDLQEEAINAQLDLCE-------D-ED---VQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLLQT 107 (556)
T ss_dssp HHHHHHHHCC-GGGHHHHHHHHHHHHT---------SS---HHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHTT-
T ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHh-------c-cc---HHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHHhc
Confidence 44444 999999999999999988653 1 11 36999999999999999887 667788888888886
Q ss_pred CccchhhHHHHHHHHHHH
Q 003136 301 GRLLRGEHNLLGEAFLVM 318 (845)
Q Consensus 301 ~~Ls~~E~~~L~EaLl~i 318 (845)
+. ..|..+...+|+-+
T Consensus 108 dd--~~E~~~v~~sL~~l 123 (556)
T PF05918_consen 108 DD--PVELDAVKNSLMSL 123 (556)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred cc--HHHHHHHHHHHHHH
Confidence 53 45666666666544
No 28
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.26 E-value=2.7e+02 Score=37.12 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccccchHHHH
Q 003136 259 NSARHARLQICTSFIRIAKTSDKSILPHMKDI 290 (845)
Q Consensus 259 ~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i 290 (845)
..|.++||-+.+.++.|++.+++.|.||+..+
T Consensus 1142 s~v~evr~~si~tl~dl~Kssg~~lkP~~~~L 1173 (1702)
T KOG0915|consen 1142 SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKL 1173 (1702)
T ss_pred cchHHHHHHHHHHHHHHHHhchhhhcchhhHH
Confidence 47899999999999999999999999998777
No 29
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=33.98 E-value=3.7e+02 Score=26.71 Aligned_cols=117 Identities=17% Similarity=0.089 Sum_probs=72.8
Q ss_pred hHHHHHHHHhhcCchHHH-HHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHH
Q 003136 116 RLLELVKFVASNKPLVAG-VKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSR 194 (845)
Q Consensus 116 ~~~~iir~~~~~~P~~a~-~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~ 194 (845)
.=..+++.++...+-+.+ +...+|+..+++-... +++....++....+.-++..+- .++. . +.+....
T Consensus 44 ~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~----~~~~~~~~~ai~~L~~l~~~~~----~~p~--l-~Rei~tp 112 (165)
T PF08167_consen 44 AGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK----PDPPSVLEAAIITLTRLFDLIR----GKPT--L-TREIATP 112 (165)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhc----CCCc--h-HHHHhhc
Confidence 345678888888744555 8899999998776522 2333345555554444443222 2222 1 2333455
Q ss_pred HHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHHhc
Q 003136 195 IFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLT 247 (845)
Q Consensus 195 ~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p~~l~~VL~klf~~l~ 247 (845)
.+..+++.|+..--. -.....+++++...++++|....+.-+||-..+.
T Consensus 113 ~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 113 NLPKFIQSLLQLLQD----SSCPETALDALATLLPHHPTTFRPFANKIESALL 161 (165)
T ss_pred cHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHCCccccchHHHHHHHHH
Confidence 566777777754322 2445568889999999999998888888866543
No 30
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=33.71 E-value=7.6e+02 Score=28.13 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHc
Q 003136 258 TNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQRE 300 (845)
Q Consensus 258 ~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~ 300 (845)
......++..+|..+.+.+.+|.+.+-|+++.+.+.+-+++.+
T Consensus 106 ~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~ 148 (370)
T PF08506_consen 106 PGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTK 148 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357899999999999999999999999999998888888876
No 31
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=32.71 E-value=1.7e+02 Score=26.65 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.8
Q ss_pred HHHHHHHHhHHHHHhhchHhHhh
Q 003136 327 QQEVLAWLLEPLSQQWMQLEWQN 349 (845)
Q Consensus 327 q~~~L~~ll~P~~~~W~~~e~~~ 349 (845)
=.+.+..|+.|+..-..+++++.
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rV 43 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRV 43 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHH
Confidence 57889999999999888888775
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=32.40 E-value=5.4e+02 Score=30.11 Aligned_cols=163 Identities=15% Similarity=0.034 Sum_probs=95.3
Q ss_pred HHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHH
Q 003136 112 QYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLS 191 (845)
Q Consensus 112 ~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~ 191 (845)
..|+-..-.+.......|+.+.-. .+-+..=+.++ .++...-|+.++.--.. ..
T Consensus 57 ~~Krl~yl~l~~~~~~~~~~~~l~-~n~l~kdl~~~-------n~~~~~lAL~~l~~i~~------------------~~ 110 (526)
T PF01602_consen 57 ELKRLGYLYLSLYLHEDPELLILI-INSLQKDLNSP-------NPYIRGLALRTLSNIRT------------------PE 110 (526)
T ss_dssp HHHHHHHHHHHHHTTTSHHHHHHH-HHHHHHHHCSS-------SHHHHHHHHHHHHHH-S------------------HH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHH-HHHHHHhhcCC-------CHHHHHHHHhhhhhhcc------------------cc
Confidence 455555555667777777744432 33333333332 45666666655433221 12
Q ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcCCCchHH-HHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHH
Q 003136 192 LSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGG-VISKLFELLTSLPFVFKDPSTNSARHARLQICT 270 (845)
Q Consensus 192 l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p~~l~~-VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s 270 (845)
+.+.+..-+..+++ -++|.++++ .+.++..+.+..|+.+.. +++++.++|. ++. -.++..|+.
T Consensus 111 ~~~~l~~~v~~ll~--~~~~~VRk~---A~~~l~~i~~~~p~~~~~~~~~~l~~lL~-------d~~----~~V~~~a~~ 174 (526)
T PF01602_consen 111 MAEPLIPDVIKLLS--DPSPYVRKK---AALALLKIYRKDPDLVEDELIPKLKQLLS-------DKD----PSVVSAALS 174 (526)
T ss_dssp HHHHHHHHHHHHHH--SSSHHHHHH---HHHHHHHHHHHCHCCHHGGHHHHHHHHTT-------HSS----HHHHHHHHH
T ss_pred hhhHHHHHHHHHhc--CCchHHHHH---HHHHHHHHhccCHHHHHHHHHHHHhhhcc-------CCc----chhHHHHHH
Confidence 23335555566664 557887777 556677777889999877 7888877663 111 378888998
Q ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHh
Q 003136 271 SFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMA 319 (845)
Q Consensus 271 ~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is 319 (845)
.+..+ +..++...+.+..+...+.++. +..++.-++.+...|--++
T Consensus 175 ~l~~i-~~~~~~~~~~~~~~~~~L~~~l--~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 175 LLSEI-KCNDDSYKSLIPKLIRILCQLL--SDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp HHHHH-HCTHHHHTTHHHHHHHHHHHHH--TCCSHHHHHHHHHHHTTST
T ss_pred HHHHH-ccCcchhhhhHHHHHHHhhhcc--cccchHHHHHHHHHHHhcc
Confidence 88888 4444443355555555555443 4566666666666655443
No 33
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=31.82 E-value=2.2e+02 Score=31.32 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCchHHHHHH-----hCCCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhcCCc
Q 003136 734 ISADLVGLCREIFIYMCDRDPAPRQVLL-----SLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNN 802 (845)
Q Consensus 734 ~~~~L~~L~~~iy~~l~~~~~~~r~vL~-----~lP~i~~~~l~~f~~~L~~~~s~K~qr~~~k~LL~~~~g~~ 802 (845)
.......+|...|..+|........++. .+|+.+.+++..+.+++.=..++.+-+..|.++++...+..
T Consensus 200 ~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~~~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~~ 273 (289)
T cd00893 200 DFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFRGSTIKKLKERLCLNMSEKEAINTVMKKIDSSYNSI 273 (289)
T ss_pred hHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhh
Confidence 3445667777777777766665555432 67899999999999999877899999999999999888753
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=31.62 E-value=1.9e+02 Score=34.01 Aligned_cols=87 Identities=14% Similarity=0.134 Sum_probs=55.9
Q ss_pred hhhhHhHhcCcCchhHHHHHHHhhhc-ccchhhhhHHHHhHHHHHHHhhhccchhhhHHHHHHHHHHHHHhhcccchHhh
Q 003136 656 NSMVGFLLKHKDLALPALQISLEAFT-WTDGEAVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVI 734 (845)
Q Consensus 656 ~~l~~~ll~~~~i~~~~L~~~~~~l~-w~Dt~~~~ka~~f~~~Lv~~~~~~~~~~l~~~i~~~v~~a~L~~L~~~~~~~~ 734 (845)
..+...+-++++.-...+..++..+. -.+.+ ..+ ..+|++=+..-...+ .+ ...+++..+++...... ...
T Consensus 399 ~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~-~~~--~~~wilGEy~~~~~~---~~-~~~~~~~~l~~~~~~~~-~~v 470 (526)
T PF01602_consen 399 NVIRDLLSNNPELREKILKKLIELLEDISSPE-ALA--AAIWILGEYGELIEN---TE-SAPDILRSLIENFIEES-PEV 470 (526)
T ss_dssp HHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHH-HHH--HHHHHHHHHCHHHTT---TT-HHHHHHHHHHHHHTTSH-HHH
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHhhHHH-HHH--HHHhhhcccCCcccc---cc-cHHHHHHHHHHhhcccc-HHH
Confidence 45677777788887777777777765 33333 233 345555443311111 22 67788888887776653 578
Q ss_pred HHHHHHHHHHHHHHhc
Q 003136 735 SADLVGLCREIFIYMC 750 (845)
Q Consensus 735 ~~~L~~L~~~iy~~l~ 750 (845)
+..+++....+|....
T Consensus 471 k~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 471 KLQILTALAKLFKRNP 486 (526)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhCC
Confidence 9999999999996644
No 35
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=31.24 E-value=3.2e+02 Score=25.17 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=57.7
Q ss_pred HhccCCCCchHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhh-ccc
Q 003136 203 LLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKT-SDK 281 (845)
Q Consensus 203 lL~~~~~dPll~~~~l~~L~~l~~~l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~-~~~ 281 (845)
+...+.+.|..- ..+++.++..+.+..++.+-.++-||...|.+. -...++|..|+....-+.+. .++
T Consensus 20 l~d~~~~~~~~e--k~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sa---------l~~~~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 20 LNDLRGKKPIPE--KKRALRSIEELIKLGGSHISSARPQIMACLQSA---------LEIPELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HhccccCCCHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------hCChhhHHHHHHHHHHHHHHCCHH
Confidence 333344445433 345778888888877777777778887766521 01137889999998888887 677
Q ss_pred cccchHHHHHHHHHHHH
Q 003136 282 SILPHMKDIADTMAYLQ 298 (845)
Q Consensus 282 ~l~p~le~i~~~v~~L~ 298 (845)
.+.|.++++.-.+-++|
T Consensus 89 ~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 89 DLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 78888888866665544
No 36
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=29.30 E-value=2e+02 Score=32.56 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCCchHHHHHH-----hCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhhhcCC
Q 003136 733 VISADLVGLCREIFIYMCDRDPAPRQVLL-----SLPCIT-PQDLLAFEDALTKTASPREQKQHMRSLLVLGTGN 801 (845)
Q Consensus 733 ~~~~~L~~L~~~iy~~l~~~~~~~r~vL~-----~lP~i~-~~~l~~f~~~L~~~~s~K~qr~~~k~LL~~~~g~ 801 (845)
+.......+|...|..+|......-.++. .+|+++ .+++..+.+++.-..++.+....|++++....+.
T Consensus 265 ~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~~~~i~~l~~r~~l~~s~~ea~~~~~~~I~~s~~s 339 (353)
T cd05166 265 QRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSKIQDLKYVRDALRPQLTDAEATIQFTKMIQSSLGS 339 (353)
T ss_pred chHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 44556677777777777766665555432 678888 7799999999988889999999999999988754
No 37
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=28.87 E-value=9.7e+02 Score=28.25 Aligned_cols=36 Identities=8% Similarity=0.289 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-ccccchHHHHHHHHH
Q 003136 260 SARHARLQICTSFIRIAKTSD-KSILPHMKDIADTMA 295 (845)
Q Consensus 260 ~v~~~Rr~a~s~Lirla~~~~-~~l~p~le~i~~~v~ 295 (845)
.-..+|+.|...||-|-..-- +.|.|||+++....-
T Consensus 460 ~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~ 496 (516)
T KOG2956|consen 460 TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKL 496 (516)
T ss_pred chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHH
Confidence 346899999999999999977 999999999955443
No 38
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=27.46 E-value=1e+02 Score=22.99 Aligned_cols=32 Identities=13% Similarity=0.028 Sum_probs=25.0
Q ss_pred HHHhhHHHHHHHHhhcCchHHHHHHHHHHHHH
Q 003136 112 QYRSRLLELVKFVASNKPLVAGVKVSERVMAI 143 (845)
Q Consensus 112 ~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~ 143 (845)
+++.-+.+++|.+.+.+|.+.++++.++++.+
T Consensus 2 ~l~~lL~~~~~~vl~~qP~Di~~F~a~yF~~L 33 (38)
T PF02197_consen 2 GLQELLKEFTREVLREQPDDILQFAADYFEKL 33 (38)
T ss_dssp THHHHHHHHHHHHHHH--S-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 46777889999999999999999999999554
No 39
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=27.17 E-value=1.2e+03 Score=28.31 Aligned_cols=236 Identities=14% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh---ccCCCCchHHHHHHHHHHhhhhhhhcCCCchHHH--------HHHHHHHhcCCCCCCCCCCchH
Q 003136 192 LSRIFEGLLRQLL---SLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGV--------ISKLFELLTSLPFVFKDPSTNS 260 (845)
Q Consensus 192 l~~~~~~llq~lL---~~~~~dPll~~~~l~~L~~l~~~l~~~p~~l~~V--------L~klf~~l~~~p~~~~~~~~~~ 260 (845)
+.+-.+.++..|+ ....+|-.++.- .+++|+.++..-|+.+... +.||=+++.-.-.-....+.-.
T Consensus 492 l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s---~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~ 568 (858)
T COG5215 492 LAKFYLAILNALVKGTELALNESNLRVS---LFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLL 568 (858)
T ss_pred hHHHHHHHHHHHHHHHHhhccchhHHHH---HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHhHHH
Q 003136 261 ARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS--AAGIQQQQEVLAWLLEPL 338 (845)
Q Consensus 261 v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~--~~~~~~q~~~L~~ll~P~ 338 (845)
+.++..-.|..|-.+-++.+..+-|.-|++.+..-+++.+. ...+..-+.+.+|++ .+=-++=.+.+..|+-=+
T Consensus 569 ~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~----~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl 644 (858)
T COG5215 569 VEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILEST----KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYL 644 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhcc----CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q ss_pred HHhhchHhHhhhhcCCHHHHHHHhc---CCcccchhHhhHHHHHHHHHhccccccccccccCCCCCcccccchhhh----
Q 003136 339 SQQWMQLEWQNNYLSEPLGLVRLCS---DTSFMWSLFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASH---- 411 (845)
Q Consensus 339 ~~~W~~~e~~~~~lss~~~f~~~~g---~~~~~~~~~~~v~~~~~~Lkr~~~~~~~~~s~~~~~~~~~~~~P~~~~---- 411 (845)
.+.....+-+ ++++..||+.=+. ...++-.--..++.+-.+|....+....++ +...-....
T Consensus 645 ~~aln~~d~~--v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKP---------aiLSvFgDIAlai 713 (858)
T COG5215 645 TRALNCTDRF--VLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKP---------AILSVFGDIALAI 713 (858)
T ss_pred HHHhcchhHH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccch---------HHHHHHHHHHHHH
Q ss_pred ---hhhhhhHHHHHHHHHHhccCccccCcCcHHHHHHc
Q 003136 412 ---LSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAM 446 (845)
Q Consensus 412 ---i~~iLP~lL~Llr~~h~l~~P~~~~~Lp~~~~~~~ 446 (845)
+.+.|..|+.|+.++.++- |++-..---+|+..+
T Consensus 714 ga~F~~YL~~im~L~qqas~~~-p~~~~~~~~dy~~~~ 750 (858)
T COG5215 714 GANFESYLDMIMMLFQQASELD-PHSDEVYVDDYRKNA 750 (858)
T ss_pred hhhHHHHHHHHHHHHHHHhccC-CCCCceeHHHHHHHH
No 40
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=27.09 E-value=4e+02 Score=24.79 Aligned_cols=90 Identities=14% Similarity=0.132 Sum_probs=55.8
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 003136 198 GLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAK 277 (845)
Q Consensus 198 ~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~ 277 (845)
..-+.+.+.+.+-|..- ..+++.++..+.+-..+.+...+-||..+|.+. -+..++|..|++.+.-+-+
T Consensus 15 ~f~~~l~d~~g~~~~~e--k~~~i~ai~~lI~~~g~~i~~a~pQI~acL~sa---------L~~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 15 VFSNILHDSSGKKPYNE--KKRALRSIGFLIKLMGKHISSALPQIMACLQSA---------LEIPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHcCcccCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hCchhHHHHHHHHHHHHHH
Confidence 33334444444334332 235777777777766566677777777776531 1124699999999888877
Q ss_pred h-ccccccchHHHHHHHHHHHH
Q 003136 278 T-SDKSILPHMKDIADTMAYLQ 298 (845)
Q Consensus 278 ~-~~~~l~p~le~i~~~v~~L~ 298 (845)
. .+..+.|.++++.-.+-+.|
T Consensus 84 ~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 84 TLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred hCCHHHHHHHHHHHHHHHHHhc
Confidence 7 56667777777755554433
No 41
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=26.84 E-value=9.5e+02 Score=27.04 Aligned_cols=154 Identities=14% Similarity=0.152 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHh-ccCCCCchHHHHHHHHHHhhhhh-------hhcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHH
Q 003136 191 SLSRIFEGLLRQLL-SLKWTEPPLVVALGHYLDALGPF-------LKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSAR 262 (845)
Q Consensus 191 ~l~~~~~~llq~lL-~~~~~dPll~~~~l~~L~~l~~~-------l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~ 262 (845)
++.+.+..-+...+ .++.+||--...-+..+-.++.- ++..|+....++-++|.. ...+-.
T Consensus 297 aicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdq-----------nahakq 365 (524)
T KOG4413|consen 297 AICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQ-----------NAHAKQ 365 (524)
T ss_pred HHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcc-----------cccchH
Confidence 33333333333333 45778898888877776666653 344455555555555331 111223
Q ss_pred HHHHHHHHHHHHHHhhccccccc--hHHHH-HHHHHHHHHcCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHH
Q 003136 263 HARLQICTSFIRIAKTSDKSILP--HMKDI-ADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLS 339 (845)
Q Consensus 263 ~~Rr~a~s~Lirla~~~~~~l~p--~le~i-~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~~~~~~~q~~~L~~ll~P~~ 339 (845)
.+.-||...+-..-+.-|..+.. ..+.+ +-+-..+-++.+|+.. |.|+-|.+-..++-+..-+..+-.=+.
T Consensus 366 eaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPl------eLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 366 EAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPL------ELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred HHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChH------HHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 45556666555555556666666 44444 3333444455666664 456667776667777888888888888
Q ss_pred HhhchHhHhhhhcCCHHHHHHHhcCCc
Q 003136 340 QQWMQLEWQNNYLSEPLGLVRLCSDTS 366 (845)
Q Consensus 340 ~~W~~~e~~~~~lss~~~f~~~~g~~~ 366 (845)
+.|+..++-++ .+|+.++.|..
T Consensus 440 qPWalkeifak-----eefieiVtDas 461 (524)
T KOG4413|consen 440 QPWALKEIFAK-----EEFIEIVTDAS 461 (524)
T ss_pred CcHHHHHHhcC-----ccceeeecccc
Confidence 99998886542 68999887643
No 42
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=24.40 E-value=27 Score=18.05 Aligned_cols=7 Identities=29% Similarity=1.160 Sum_probs=5.6
Q ss_pred hhccCCh
Q 003136 553 MVKFCPL 559 (845)
Q Consensus 553 lv~~CP~ 559 (845)
+|.|||.
T Consensus 2 ~i~nCP~ 8 (9)
T PF00220_consen 2 YIRNCPI 8 (9)
T ss_pred ccccCCC
Confidence 6789995
No 43
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=24.02 E-value=1.3e+03 Score=27.48 Aligned_cols=148 Identities=18% Similarity=0.194 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhc-cCCCCchHHHHHHHHHHhhhhh------h-hcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHH
Q 003136 193 SRIFEGLLRQLLS-LKWTEPPLVVALGHYLDALGPF------L-KYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHA 264 (845)
Q Consensus 193 ~~~~~~llq~lL~-~~~~dPll~~~~l~~L~~l~~~------l-~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~ 264 (845)
.......+..+.. .+..|+.++..-+..+..++.. + ...++.+..+|.+++......| .++
T Consensus 285 ~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~-----------~~l 353 (503)
T PF10508_consen 285 LELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS-----------TEL 353 (503)
T ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCc-----------hHH
Confidence 3344455555553 3788999998877777777652 3 4456788888888888765221 255
Q ss_pred HHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhc-CCC-HHHHHHHHHHHhHHHHHhh
Q 003136 265 RLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS-AAG-IQQQQEVLAWLLEPLSQQW 342 (845)
Q Consensus 265 Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~-~~~-~~~q~~~L~~ll~P~~~~W 342 (845)
|-+|..+|-.+-..... +.=+.+.+..+.... .++..+... ++++. ..+ +|-|..-+.-+-.=+...|
T Consensus 354 k~r~l~al~~il~~~~~---~~~~~i~~~~~~w~~--~~~~~~~~~-----~l~~~~~qPF~elr~a~~~~l~~l~~~~W 423 (503)
T PF10508_consen 354 KLRALHALASILTSGTD---RQDNDILSITESWYE--SLSGSPLSN-----LLMSLLKQPFPELRCAAYRLLQALAAQPW 423 (503)
T ss_pred HHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHH--HhcCCchHH-----HHHHHhcCCchHHHHHHHHHHHHHhcCHH
Confidence 66666665555333221 112222222221111 122222221 22333 445 4667888877777777888
Q ss_pred chHhHhhhhcCCHHHHHHHhcCCc
Q 003136 343 MQLEWQNNYLSEPLGLVRLCSDTS 366 (845)
Q Consensus 343 ~~~e~~~~~lss~~~f~~~~g~~~ 366 (845)
...++ .+..||++|+-|.+
T Consensus 424 g~~~i-----~~~~gfie~lldr~ 442 (503)
T PF10508_consen 424 GQREI-----CSSPGFIEYLLDRS 442 (503)
T ss_pred HHHHH-----HhCccHHhhhcCCC
Confidence 76654 44479999997644
No 44
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=23.71 E-value=1.1e+03 Score=26.63 Aligned_cols=52 Identities=27% Similarity=0.424 Sum_probs=40.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhc--cccccchHHHHHHHHH
Q 003136 232 PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTS--DKSILPHMKDIADTMA 295 (845)
Q Consensus 232 p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~--~~~l~p~le~i~~~v~ 295 (845)
|.+..+||..+|..+. .+ .-+|.+.-..++.+|..+ -..|.|-++++-+..+
T Consensus 102 ~~l~L~vLsnLfn~~d-------~~-----~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lk 155 (378)
T KOG2753|consen 102 ASLRLQVLSNLFNGVD-------KP-----TPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLK 155 (378)
T ss_pred cccHHHHHHHHHhccC-------CC-----chHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHH
Confidence 6677888888888543 11 138999999999999995 4568899999988776
No 45
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=23.42 E-value=2.9e+02 Score=30.52 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCCchHHHH---HH---hCCCCC--HHHHHHHHHHHhcCCChHHHHHHHHHHHhhhcCCc
Q 003136 733 VISADLVGLCREIFIYMCDRDPAPRQV---LL---SLPCIT--PQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNN 802 (845)
Q Consensus 733 ~~~~~L~~L~~~iy~~l~~~~~~~r~v---L~---~lP~i~--~~~l~~f~~~L~~~~s~K~qr~~~k~LL~~~~g~~ 802 (845)
+.......+|...|..+|........+ |. .+|..+ .+++..+.+++.-..++++-...|.+++..+.+..
T Consensus 200 ~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~~~~~i~~l~~r~~l~~se~~a~~~~~~lI~~s~~~~ 277 (293)
T cd05168 200 DLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPCFKAGEFTIQQLRDRFMLNLTEEQLEVFVDELINQSLDNW 277 (293)
T ss_pred chhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCccccCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhch
Confidence 345667778888888888776655443 33 467777 78999999999888899999999999999998763
No 46
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=23.01 E-value=1.3e+02 Score=22.30 Aligned_cols=32 Identities=13% Similarity=0.011 Sum_probs=27.8
Q ss_pred HHHhhHHHHHHHHhhcCchHHHHHHHHHHHHH
Q 003136 112 QYRSRLLELVKFVASNKPLVAGVKVSERVMAI 143 (845)
Q Consensus 112 ~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~ 143 (845)
+++..+.+.++.+...+|.+-++|+.++++..
T Consensus 2 ~~~~~L~~~~~~vl~~qP~d~~~f~~~yF~kL 33 (38)
T smart00394 2 GLQALLEDLTVEVLRAQPSDLVQFAADYFEKL 33 (38)
T ss_pred cHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 46788899999999999999999999998543
No 47
>PF13495 Phage_int_SAM_4: Phage integrase, N-terminal SAM-like domain; PDB: 2A3V_A.
Probab=21.17 E-value=2e+02 Score=24.51 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=37.4
Q ss_pred HhhHHHHHHHHHHHHHHhcCCCchHHHHHHhCCCCCHHHHHHHHHHHhc-----CCChHHHHHHHHHHHhhhcCCchH
Q 003136 732 AVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTK-----TASPREQKQHMRSLLVLGTGNNLK 804 (845)
Q Consensus 732 ~~~~~~L~~L~~~iy~~l~~~~~~~r~vL~~lP~i~~~~l~~f~~~L~~-----~~s~K~qr~~~k~LL~~~~g~~l~ 804 (845)
......-..-+......+..+ .+..+++++|.+|-..|.. ..+-+.....++.+.+.+.+....
T Consensus 16 ~~Ti~~Y~~~l~~f~~~~~~~---------~~~~it~~~i~~y~~~l~~~~~~s~~T~~~~~~~l~~ff~~~~~~~~~ 84 (85)
T PF13495_consen 16 EKTIKNYRYHLKRFLRFLGNK---------PPDEITPEDIEQYLNYLQNERGLSPSTINQYLSALRSFFRWLLERGYE 84 (85)
T ss_dssp HHHHHHHHHHHHHHHTTSSS-----------GGG--HHHHHHHHHHHHTTT---HHHHHHHHHHHHHHHHCTSS----
T ss_pred HHHHHHHHHHHHHHHHHcccC---------ccchhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 334444444455444444423 5668999999999999983 224566677788888888776543
No 48
>PF06407 BDV_P40: Borna disease virus P40 protein; InterPro: IPR009441 This entry represents P40 nucleoproteins from several Borna disease virus (BDV) strains. BDV is an RNA virus that is a member of the Mononegavirales family, which includes such members as Measles virus and Ebola virus sp.. BDV causes an infection of the central nervous system in a wide range of vertebrates, which can progress to an often fatal immune-mediated disease. Viral nucleoproteins are central to transcription, replication, and packaging of the RNA genome. P40 nucleoprotein from BDV is multi-helical in structure and can be divided into two subdomains, each of which has an alpha-bundle topology []. The nucleoprotein assembles into a planar homotetramer, with the RNA genome either wrapping around the outside of the tetramer or possibly fitting within the charged central channel of the tetramer [].; PDB: 1N93_X 1PP1_X.
Probab=20.87 E-value=1.1e+02 Score=32.86 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHc-CccchhhHHHHHH
Q 003136 260 SARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQRE-GRLLRGEHNLLGE 313 (845)
Q Consensus 260 ~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~-~~Ls~~E~~~L~E 313 (845)
.+..+=||||++||.++..+.+.|..--++|..+-+.|..+ ++.+-.|-..|.+
T Consensus 132 e~SSi~~HCC~lLIGv~~gSS~kI~a~s~qI~RRfkAMmAsinrPshgesa~lL~ 186 (370)
T PF06407_consen 132 EKSSILRHCCDLLIGVAAGSSDKICAGSLQIQRRFKAMMASINRPSHGESADLLE 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SHHHHS--HHHHHHHHHHHHHTT-TTHHHH--TTT
T ss_pred HHHHHHHHHHHHHHhhhhcCcccccccHHHHHHHHHHHHHhcCCCCcchHHHHHH
Confidence 46788899999999999999999999999998888877777 6688888776654
No 49
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=20.86 E-value=2.4e+02 Score=32.05 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCchHHHH---HH--hCCCCC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhhhcCCc
Q 003136 733 VISADLVGLCREIFIYMCDRDPAPRQV---LL--SLPCIT-PQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNN 802 (845)
Q Consensus 733 ~~~~~L~~L~~~iy~~l~~~~~~~r~v---L~--~lP~i~-~~~l~~f~~~L~~~~s~K~qr~~~k~LL~~~~g~~ 802 (845)
+.....-.+|...|..+|......-.+ |. .+|+++ .++++.+.+++.-..++.+....|++++..+.+.+
T Consensus 272 ~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~~~~i~~l~~~~~l~~se~ea~~~f~~~i~~s~~~~ 347 (361)
T cd05174 272 EKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRES 347 (361)
T ss_pred chhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCchhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhC
Confidence 344566777888888888766655444 33 789886 47899999999888899999999999999887654
No 50
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=20.53 E-value=8.6e+02 Score=24.26 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=73.9
Q ss_pred hhhhHhHhcCcCchhHHHHHHHhhhcccchhhhhHHH-HhHHHHHHHhhhccchhhhHHHHHHHHHHHHHhhcccchHhh
Q 003136 656 NSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVS-SFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVI 734 (845)
Q Consensus 656 ~~l~~~ll~~~~i~~~~L~~~~~~l~w~Dt~~~~ka~-~f~~~Lv~~~~~~~~~~l~~~i~~~v~~a~L~~L~~~~~~~~ 734 (845)
..|+..+.+.++++++.+...+.+|.=+|. .+++.+ ....-|+..... .+ -..+|...+..|.++-
T Consensus 10 ~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~-~VR~~al~~Ls~Li~~d~i----k~----k~~l~~~~l~~l~D~~---- 76 (178)
T PF12717_consen 10 IALGDLCIRYPNLVEPYLPNLYKCLRDEDP-LVRKTALLVLSHLILEDMI----KV----KGQLFSRILKLLVDEN---- 76 (178)
T ss_pred HHHHHHHHhCcHHHHhHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHcCce----ee----hhhhhHHHHHHHcCCC----
Confidence 567888899999999999999999863332 455544 333333321111 12 2344555666664443
Q ss_pred HHHHHHHHHHHHHHhcCC-Cch-----HHHHHHhCCC---------CCHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhhh
Q 003136 735 SADLVGLCREIFIYMCDR-DPA-----PRQVLLSLPC---------ITPQDLLAFEDALTKTAS-PREQKQHMRSLLVLG 798 (845)
Q Consensus 735 ~~~L~~L~~~iy~~l~~~-~~~-----~r~vL~~lP~---------i~~~~l~~f~~~L~~~~s-~K~qr~~~k~LL~~~ 798 (845)
.++...+...+..+..+ ++. .-+++..+.+ .+.++-....+.|.+.-+ +|++-.++.||...+
T Consensus 77 -~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~ 155 (178)
T PF12717_consen 77 -PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRF 155 (178)
T ss_pred -HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 22333333333322222 222 2333433332 455666666777766545 888888888888776
Q ss_pred cCC
Q 003136 799 TGN 801 (845)
Q Consensus 799 ~g~ 801 (845)
.+.
T Consensus 156 ~~~ 158 (178)
T PF12717_consen 156 LNA 158 (178)
T ss_pred HHH
Confidence 543
No 51
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=20.39 E-value=8.9e+02 Score=26.79 Aligned_cols=100 Identities=13% Similarity=0.123 Sum_probs=53.5
Q ss_pred hhhHHHHhHHHHHHHhhhccchhhhHHHHHHHHHHHHHhhcccchHhhHHHHHHHHHHHHHHhcCCCchHHHHHHhCCCC
Q 003136 687 AVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCI 766 (845)
Q Consensus 687 ~~~ka~~f~~~Lv~~~~~~~~~~l~~~i~~~v~~a~L~~L~~~~~~~~~~~L~~L~~~iy~~l~~~~~~~r~vL~~lP~i 766 (845)
.+..|.--+|.++.-.+. +..+. -.....++.+..-| +....+++--....++-||+..+...... +.=
T Consensus 201 ~l~~aAL~aW~lLlt~~~--~~~~~-~~~~~~~~~l~~lL-~s~d~~VRiAAGEaiAll~E~~~~~~~~~-------~~~ 269 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLP--DSKLE-DLLEEALPALSELL-DSDDVDVRIAAGEAIALLYELARDHEEDF-------LYE 269 (309)
T ss_pred HHHHHHHHHHHHHHhcCC--HHHHH-HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhcccccc-------ccc
Confidence 344444456666542221 22244 23344444443433 34467788778888888888877533220 111
Q ss_pred CHHHHHHHHHHHhc-------CCChHHHHHHHHHHHhh
Q 003136 767 TPQDLLAFEDALTK-------TASPREQKQHMRSLLVL 797 (845)
Q Consensus 767 ~~~~l~~f~~~L~~-------~~s~K~qr~~~k~LL~~ 797 (845)
+.++|-+--+.|.. ++.-|+||..|++++..
T Consensus 270 ~~~~l~~~l~~La~dS~K~~sKkdrk~qRs~Frdil~~ 307 (309)
T PF05004_consen 270 DMEELLEQLRELATDSSKSRSKKDRKQQRSSFRDILTT 307 (309)
T ss_pred CHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHh
Confidence 33344333344432 34578899999998874
No 52
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=20.00 E-value=1.4e+03 Score=28.77 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=47.4
Q ss_pred ccccccccCCchh-H---------HHHHhhH--HHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHH
Q 003136 97 LELWSDDFEGKGD-F---------SQYRSRL--LELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQ 164 (845)
Q Consensus 97 ~~~~~~DFds~~e-f---------~~yR~~~--~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~ 164 (845)
.+-..++||.|++ | ..+|..+ ...+-.++.++|..+++=+..-+.+++......+-+-.--.+-|+..
T Consensus 358 see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egal 437 (970)
T COG5656 358 SEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGAL 437 (970)
T ss_pred ChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHH
Confidence 3445677877773 3 2344433 34555778899999998888888888855433222223345666766
Q ss_pred HHHHHHHH
Q 003136 165 SALENVVS 172 (845)
Q Consensus 165 ~~lE~vl~ 172 (845)
..+-++.+
T Consensus 438 r~lasi~s 445 (970)
T COG5656 438 RLLASIKS 445 (970)
T ss_pred HHHHHHHH
Confidence 66666655
Done!