Query 003136
Match_columns 845
No_of_seqs 162 out of 206
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 14:34:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a6p_A Exportin-5; exportin-5, 100.0 3E-107 9E-112 1035.0 65.0 779 1-844 352-1201(1204)
2 2x19_B Importin-13; nuclear tr 99.8 1.9E-16 6.3E-21 197.2 44.2 601 1-801 336-954 (963)
3 3ibv_A Exportin-T; karyopherin 99.8 5.1E-16 1.7E-20 193.4 42.8 601 1-802 333-979 (980)
4 2x1g_F Cadmus; transport prote 99.8 1E-15 3.6E-20 190.9 45.4 600 1-802 349-967 (971)
5 3m1i_C Exportin-1; heat repeat 99.7 4.6E-12 1.6E-16 159.5 53.0 285 2-345 346-644 (1049)
6 4hat_C Exportin-1; heat repeat 99.4 9.3E-09 3.2E-13 128.5 48.2 280 2-345 346-644 (1023)
7 3gjx_A Exportin-1; transport, 99.0 2.3E-05 7.7E-10 98.1 50.1 304 2-345 353-670 (1073)
8 4fdd_A Transportin-1; heat rep 98.1 0.0073 2.5E-07 73.8 37.1 268 3-343 259-536 (852)
9 2bpt_A Importin beta-1 subunit 97.5 0.08 2.7E-06 64.0 33.4 199 112-344 346-552 (861)
10 1qgr_A Protein (importin beta 97.4 0.31 1.1E-05 58.9 36.5 200 112-344 343-560 (876)
11 1wa5_C Importin alpha RE-expor 96.5 0.032 1.1E-06 69.3 17.1 252 71-343 333-604 (960)
12 3o2t_A Symplekin; heat repeat, 79.7 65 0.0022 35.4 18.0 99 190-296 217-318 (386)
13 4fdd_A Transportin-1; heat rep 79.6 72 0.0024 38.3 20.4 103 207-320 680-784 (852)
14 2vgl_A Adaptor protein complex 66.6 21 0.00073 41.7 10.8 112 194-319 145-269 (621)
15 1qgr_A Protein (importin beta 66.5 1.7E+02 0.0058 34.6 19.1 119 211-340 622-741 (876)
16 2bpt_A Importin beta-1 subunit 62.8 2.4E+02 0.0081 33.2 25.3 163 108-299 567-733 (861)
17 1u6g_C TIP120 protein, CAND1; 54.3 3.1E+02 0.011 34.2 19.1 172 112-300 348-530 (1230)
18 2qk1_A Protein STU2; STU2P, XM 50.8 1.3E+02 0.0046 30.3 12.4 142 210-364 74-224 (249)
19 1ibr_B P95, importin beta-1 su 43.8 2.3E+02 0.0078 30.3 13.8 115 112-246 343-460 (462)
20 2qk1_A Protein STU2; STU2P, XM 43.1 1.3E+02 0.0046 30.3 11.0 99 209-320 116-220 (249)
21 1u6g_C TIP120 protein, CAND1; 42.6 1.5E+02 0.0052 37.1 13.5 119 207-340 185-303 (1230)
22 1wa5_C Importin alpha RE-expor 41.7 5.5E+02 0.019 31.0 22.2 40 260-299 258-297 (960)
23 3gs3_A Symplekin, LD45768P; he 41.5 1.6E+02 0.0053 30.4 11.0 51 190-241 204-255 (257)
24 2izx_A CAMP-dependent protein 38.7 32 0.0011 24.9 3.8 34 112-145 6-39 (41)
25 2qk2_A LP04448P; mini spindles 36.3 3.2E+02 0.011 26.7 14.0 115 209-342 69-185 (242)
26 2qk2_A LP04448P; mini spindles 32.6 3.6E+02 0.012 26.3 15.4 60 262-323 71-130 (242)
27 1w63_A Adapter-related protein 28.1 7.1E+02 0.024 28.3 15.5 65 198-278 316-380 (618)
28 3u0r_A Apoptosis inhibitor 5; 26.9 1.3E+02 0.0044 34.0 7.8 78 222-318 49-127 (507)
29 3ibv_A Exportin-T; karyopherin 26.8 5.1E+02 0.018 31.7 14.2 109 216-340 668-787 (980)
30 3tj1_A RNA polymerase I-specif 26.3 2.3E+02 0.008 33.1 10.3 190 108-340 67-261 (649)
31 1uw4_B UPF2, regulator of nons 26.1 67 0.0023 33.0 5.0 52 196-247 21-87 (248)
32 1ibr_B P95, importin beta-1 su 25.8 3.6E+02 0.012 28.7 11.5 87 198-295 175-265 (462)
33 2kyg_A CAMP-dependent protein 24.3 73 0.0025 24.2 3.8 35 111-145 13-47 (50)
34 2vgl_B AP-2 complex subunit be 23.1 8.4E+02 0.029 27.5 14.5 132 112-283 368-499 (591)
No 1
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=2.8e-107 Score=1034.99 Aligned_cols=779 Identities=21% Similarity=0.304 Sum_probs=611.0
Q ss_pred CHHHHHhhhccchHHHHHhHHHHHHHHHHh-hhccccccccCCCCCcccCCCCCCCCccchhhhhhcccchhhHHHHHHH
Q 003136 1 MSFQMLGYFQHFKIALHFQSLLFWLALMRD-LMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDI 79 (845)
Q Consensus 1 yL~~~L~~t~HpSl~ls~~~l~~W~~llr~-~~~k~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~LL~~ 79 (845)
|+++||.+|+||+..|+..++.||.+++|+ .+++.. .+ .++++.|+++
T Consensus 352 ~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~--------------------------~~-----~~~l~~Ll~v 400 (1204)
T 3a6p_A 352 YLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDP--------------------------LL-----LAIIPKYLRA 400 (1204)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCH--------------------------HH-----HHHHHHHHHH
T ss_pred HHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccH--------------------------HH-----HHHHHHHHHH
Confidence 588999999999999999999999999999 322211 12 2789999999
Q ss_pred HHHHHhhhcCCCCCCC--CccccccccCCchh----HHHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcc-----
Q 003136 80 SFQRLVKREKAPGTQG--PLELWSDDFEGKGD----FSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLL----- 148 (845)
Q Consensus 80 ~~~rl~k~~~~~~~~~--~~~~~~~DFds~~e----f~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~----- 148 (845)
+++|+.|. ..|++.. +.+|..+|||+++| |.+||+++.+++|.++++.|..++.++.+|+...+.+..
T Consensus 401 l~~~l~k~-~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~ 479 (1204)
T 3a6p_A 401 SMTNLVKM-GFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSV 479 (1204)
T ss_dssp HHHHHSCC-CCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHHh-cCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhccccc
Confidence 99988776 3343322 24577799999866 489999999999999999999999999999988876531
Q ss_pred ------------cCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCCchHHHH
Q 003136 149 ------------ISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVA 216 (845)
Q Consensus 149 ------------~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~llq~lL~~~~~dPll~~~ 216 (845)
.|+..++.+..|||+.+++||+++++++|.. .+. .+. ..++++++.|++++++||.++.+
T Consensus 480 ~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e-~~~--l~~-----~~~~~Ll~~ll~~~~~~p~l~~~ 551 (1204)
T 3a6p_A 480 NSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLN-REE--IPV-----NDGIELLQMVLNFDTKDPLILSC 551 (1204)
T ss_dssp -----------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSC-TTC--CCH-----HHHHHHHHHHHHCCCSCHHHHHH
T ss_pred ccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccc-ccc--ccH-----HHHHHHHHHHHhCCCCChHHHHH
Confidence 3466789999999999999999999999763 121 111 23788999999999999999999
Q ss_pred HHHHHHhhhhhhhcCCCchHHHHHHHHHHhcCC-CCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Q 003136 217 LGHYLDALGPFLKYYPDAVGGVISKLFELLTSL-PFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMA 295 (845)
Q Consensus 217 ~l~~L~~l~~~l~~~p~~l~~VL~klf~~l~~~-p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~ 295 (845)
++++++.++.++.++|+++++||++||+.+++. |+..++++++++|++|++||++|.++|+.+++.+.||+++|.+.+.
T Consensus 552 ~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~ 631 (1204)
T 3a6p_A 552 VLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVK 631 (1204)
T ss_dssp HHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988864 5456778899999999999999999999999999999999999999
Q ss_pred HHHHcCc-cchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHhHHHHHhhchHhHhhhhcCCHHHHHHHhcCC--------
Q 003136 296 YLQREGR-LLRGEHNLLGEAFLVMAS-AAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDT-------- 365 (845)
Q Consensus 296 ~L~~~~~-Ls~~E~~~L~EaLl~is~-~~~~~~q~~~L~~ll~P~~~~W~~~e~~~~~lss~~~f~~~~g~~-------- 365 (845)
+++++++ ++.+|++.|+||++++++ ..+.++|.++|+++++|+.+.|.+++|++ ++++|.+|++++|..
T Consensus 632 ~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~~~~~-~~s~~~~f~~~~G~~~~~~~~~~ 710 (1204)
T 3a6p_A 632 QLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQDMHR-VLSDVDAFIAYVGTDQKSCDPGL 710 (1204)
T ss_dssp HHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCHHHHH-HHHCHHHHHHHHTSSCC--CTTC
T ss_pred HHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccHHHHH-hhcCHHHHHHHhCCCCCcccccc
Confidence 9999998 999999999999999987 68899999999999999999999999997 999999999999921
Q ss_pred -----cccchhHhhHHHHHHHHHhccccccc---------cccccCCCCCcccccchhhhhhhhhhHHHHHHHHHHhccC
Q 003136 366 -----SFMWSLFHTVTFFERALKRSGIRKAN---------LNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWS 431 (845)
Q Consensus 366 -----~~~~~~~~~v~~~~~~Lkr~~~~~~~---------~~s~~~~~~~~~~~~P~~~~i~~iLP~lL~Llr~~h~l~~ 431 (845)
..|+.++++++.+++++||++++..+ +++ ...++|.++||+++++++|||+|++|+|++|++|+
T Consensus 711 ~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~--~~~~~p~~~~p~~~~i~~ilP~ll~Ll~~~~~l~~ 788 (1204)
T 3a6p_A 711 EDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGY--TSSGNPIFRNPCTEQILKLLDNLLALIRTHNTLYA 788 (1204)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEE--CSSCCEEECCTTHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceecc--CCCCCccccCchHHHHHHHhHHHHHHHHHHHHhcC
Confidence 13789999999999999998665432 221 13677899999999999999999999999999999
Q ss_pred ccccCcCcHHHHHHccCCHHHHhhhcCCCCCCCccccccccCCCccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhh
Q 003136 432 PSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA 511 (845)
Q Consensus 432 P~~~~~Lp~~~~~~~~~~~~Er~~~lG~~~~~~sk~~~~~~d~~~~~~~~~~~~~~~~~~~r~~l~~~Re~~Y~ilg~~~ 511 (845)
|++|+++|++|+++++|+++||+|++|.+. .++ +|++.. ......+++|+|++.+||+||++||+++
T Consensus 789 p~~~~~l~~~~~~~~~~~~~er~~~~g~~~--~~~---~~~~~~--------~~~~~~~~l~~~~~~~re~~y~~lg~~~ 855 (1204)
T 3a6p_A 789 PEMLAKMAEPFTKALDMLDAEKSAILGLPQ--PLL---ELNDSP--------VFKTVLERMQRFFSTLYENCFHILGKAG 855 (1204)
T ss_dssp HHHHTTSCGGGTTTTSCCHHHHHHHTCCCC--CCC---CTTCCC--------SCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhhhcCHHHHHHHhccHHHHHHhcCCCc--ccc---cccccC--------CCcCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999876 333 444431 2246789999999999999999999995
Q ss_pred -cCCcccccCCCchh-HHHHHhccCCCCchhhHHHHHHHHHHhhhccCChhhHHHHHHHHhHHHHHHHHHHHHhhHHHhh
Q 003136 512 -TIGDPFFKSLDSGS-VVVALMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLM 589 (845)
Q Consensus 512 -~l~~~FY~~~~l~~-l~~alf~~l~~l~~~~lr~ll~~~vrplv~~CP~~~~~~~l~plL~~lf~~~~~rL~~~W~~i~ 589 (845)
++|++||++++++. +..|+|+++++||+||||.+||++++|+|++||+++|++|+.|+|+++|++|++||+++|+.+.
T Consensus 856 ~~l~~~fy~~~~l~~~l~~~~f~~l~~~~~~~l~~li~~~~~p~i~~CP~~~~~~~l~plL~~lf~~~~~~L~~~W~~i~ 935 (1204)
T 3a6p_A 856 PSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVFVKPLVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVIN 935 (1204)
T ss_dssp HHHCTTTTTSTTHHHHHHHHTTSSTTTSCHHHHHHHHHHTHHHHHHTCCGGGTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccCCcchHHHHHHHHHhcchhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999976 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh---------cCCchhHHHHhhHHHHHHhHHHHHHHHHHhcCCCCCCCCCCCCCCCccccc--cccc--ccchhhhhh
Q 003136 590 HEV---------AGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFYRVD--VLSL--KDLDAFASN 656 (845)
Q Consensus 590 ~~~---------~~~~~~eE~leE~lLR~LTre~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~--~~~~~~~~~ 656 (845)
+++ +++++++||+||+|||+|||++++++.+++.++.+ +.+ ..+|+.+.+| +.+. .+......+
T Consensus 936 ~~~~~~~~~~~~~~~~~~~E~~~e~llr~lTr~~~~ll~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1204)
T 3a6p_A 936 QRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKKG-ADH--SSAPPADGDDEEMMATEVTPSAMAELT 1012 (1204)
T ss_dssp TC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHBC---------------------------------CBC
T ss_pred HHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCc--cccccccccccccccccccccchhhcc
Confidence 851 24679999999999999999999999999877532 211 1223333332 2222 222345558
Q ss_pred hhhHhHhcCcCchhHHHHHHHhhhcccchh-hhhHHHHhHHHHHHHhhhccchhhhHHHHHHHHHHHHHhhcccch-Hhh
Q 003136 657 SMVGFLLKHKDLALPALQISLEAFTWTDGE-AVTKVSSFCSAVVLLAIQSNNIELRQFVSKDLFSAIIRGLALESN-AVI 734 (845)
Q Consensus 657 ~l~~~ll~~~~i~~~~L~~~~~~l~w~Dt~-~~~ka~~f~~~Lv~~~~~~~~~~l~~~i~~~v~~a~L~~L~~~~~-~~~ 734 (845)
+|++|+|.|+++++|+|.+|+++|+|+||+ |+.+|+.||+.+++.... +..+.+. +.++|+++|+||+.+++ +++
T Consensus 1013 ~l~~~~l~~~~~~~~~l~~~~~~l~~~D~~~~~~~~~~~~~~~v~~~~~--~~~~~~~-~~~l~~~vl~~l~~~~~~~~~ 1089 (1204)
T 3a6p_A 1013 DLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLS--GTLLADA-VTWLFTSVLKGLQMHGQHDGC 1089 (1204)
T ss_dssp HHHHHHHSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHHTHHHHHTTSCS--SCCCHHH-HHHHHHHHHHHHHHSCSCHHH
T ss_pred hHHHHHhcCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHhc--ccCchHH-HHHHHHHHHHHHHhcCCCchh
Confidence 999999999999999999999999999999 899999999999987643 3345555 99999999999998887 899
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHhCCCCCHHHHHHHHHHHhcCC----ChHHHHHHHHHHHhhhcCCchHHhhhhh
Q 003136 735 SADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTA----SPREQKQHMRSLLVLGTGNNLKALAAQK 810 (845)
Q Consensus 735 ~~~L~~L~~~iy~~l~~~~~~~r~vL~~lP~i~~~~l~~f~~~L~~~~----s~K~qr~~~k~LL~~~~g~~l~~l~~~~ 810 (845)
++|+++|++.||+.|++++++||+||++||||+++++++|+++|.++. ++|+||++||||+++++|++++++ +
T Consensus 1090 ~~~l~~l~~~i~~~~~~~~~~~~~vl~~lP~i~~~~~~~f~~~l~~~~~~~~~~k~qr~~~~~ll~~~~g~~~~~~---~ 1166 (1204)
T 3a6p_A 1090 MASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIGKPLGEQ---F 1166 (1204)
T ss_dssp HHHHHHHHHHHHHHSTTTCSTHHHHHTTSSSCCHHHHHHHHHHSSCC---------------------------------
T ss_pred HHHHHHHHHHHHHHhCCCCccHHHHHHhCCCCCHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcCCcHHHh---h
Confidence 999999999999999999999999999999999999999999997643 599999999999999999997775 9
Q ss_pred cccc-cccCCCCCCCCCCCCCCccccCcccccccC
Q 003136 811 SVNV-ITNVSTRPRSSDNAPESRTEEGESIGLAAI 844 (845)
Q Consensus 811 ~~~v-i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 844 (845)
+++| |+|+||.+|.+|++.+...-|.+.-||+.|
T Consensus 1167 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 1201 (1204)
T 3a6p_A 1167 RKEVHIKNLPSLFKKTKPMLETEVLDNDGGGLATI 1201 (1204)
T ss_dssp -----------------------------------
T ss_pred cccccccCCCCCCCCCCCCCcCCCCCCccccHHHh
Confidence 9999 999999988777777666556655599876
No 2
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.80 E-value=1.9e-16 Score=197.24 Aligned_cols=601 Identities=12% Similarity=0.122 Sum_probs=353.4
Q ss_pred CHHHHHhhhccc-----hHHHHHhHHHHHHHHHHhhhccccccccCCCCCcccCCCCCCCCccchhhhhhcccchhhHHH
Q 003136 1 MSFQMLGYFQHF-----KIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGA 75 (845)
Q Consensus 1 yL~~~L~~t~Hp-----Sl~ls~~~l~~W~~llr~~~~k~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (845)
|++.++.+++|| .-.++..++.||.++.++....++ + .++.....+ .+++..
T Consensus 336 ~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~---------------------~-~~~~~~~~~-~~~l~~ 392 (963)
T 2x19_B 336 LVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEA---------------------E-KQAVYQQVY-RPVYFQ 392 (963)
T ss_dssp HHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCH---------------------H-HHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhh---------------------h-hhHHHHHHH-HHHHHH
Confidence 467889999995 456799999999999996321100 0 000011111 267778
Q ss_pred HHHHHHHHHhhhcCCCCCCCCccccccccCCchhHHHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCch
Q 003136 76 ILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQ 155 (845)
Q Consensus 76 LL~~~~~rl~k~~~~~~~~~~~~~~~~DFds~~ef~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~ 155 (845)
|+++...++.+.++ .++...|-|..++|.+||+.+.++++.++.+.+...++.+.+.+...+++. ..++
T Consensus 393 l~~~ll~~~~~p~~-------~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~----~~~~ 461 (963)
T 2x19_B 393 LVDVLLHKAQFPSD-------EEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSS----EEPY 461 (963)
T ss_dssp HHHHHHHHHSCCCH-------HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTC----CCSC
T ss_pred HHHHHHHHHcCCCc-------ccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc----CCCC
Confidence 88888888843222 111111222335789999999999999999999999999999999888553 1224
Q ss_pred hhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcCCCch
Q 003136 156 DLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAV 235 (845)
Q Consensus 156 ~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p~~l 235 (845)
.....||....+-++..++... ..+ .+..+++.++.+...+|.++...+.++..+..++..+|+++
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~-----~~~---------~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l 527 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVN-----YSD---------VVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI 527 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSS-----CCS---------HHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCch-----hhH---------HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 6677888877777765543321 111 13445555555555689999999999999999999889999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHHHH
Q 003136 236 GGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAF 315 (845)
Q Consensus 236 ~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~EaL 315 (845)
+.|+++||+.|. + ..+|.+||.+|.++|...++.+.||++.+.+.+..++.++.+...++..++|++
T Consensus 528 ~~vl~~l~~~l~-------~------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai 594 (963)
T 2x19_B 528 NSVLPLVLHALG-------N------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQAL 594 (963)
T ss_dssp TTTHHHHHHHTT-------C------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-------C------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 999999988763 1 368899999999999999999999999999999989988788899999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHhHHHHHhhchHhHhhhhcCCHHHHHHHhcCCcccchhHhhHHHHHHHHHhccccccccccc
Q 003136 316 LVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLNLQ 395 (845)
Q Consensus 316 l~is~~~~~~~q~~~L~~ll~P~~~~W~~~e~~~~~lss~~~f~~~~g~~~~~~~~~~~v~~~~~~Lkr~~~~~~~~~s~ 395 (845)
..+++..+.+.+..++..++.|+...|.+-. ++ . .++ ..+-.+.+.+..+..+.+..+........+
T Consensus 595 ~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~-~-~~~----------~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~ 661 (963)
T 2x19_B 595 GFLLSALQVEEILKNLHSLISPYIQQLEKLA-EE-I-PNP----------SNKLAIVHILGLLSNLFTTLDISHHEDDHE 661 (963)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH-SS-C-SCH----------HHHHHHHHHHHHHHHHHHHCCSSCCC----
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH-hC-C-CCH----------HHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 9998865678899999999999999996421 11 1 111 112223333444444444443221110000
Q ss_pred cC---CCCCcccccchhhhhhhhhhHHHHHHHHHHhccCccccCcCcHHHHHHccCCHHHHhhhcCCCCCCCcccccccc
Q 003136 396 SS---SAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFA 472 (845)
Q Consensus 396 ~~---~~~~~~~~~P~~~~i~~iLP~lL~Llr~~h~l~~P~~~~~Lp~~~~~~~~~~~~Er~~~lG~~~~~~sk~~~~~~ 472 (845)
.. ....+...+|+...+..++|.+++++.... .++
T Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~---------------------------------------- 699 (963)
T 2x19_B 662 GPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL--NDA---------------------------------------- 699 (963)
T ss_dssp -----------CCCHHHHHHHHHHHHHHHHHHHHT--TCH----------------------------------------
T ss_pred ccccccCCCCCCCCchHHHHHHHHHHHHHHHHhcc--Cch----------------------------------------
Confidence 00 001123456777777888888887776522 121
Q ss_pred CCCccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhh-cCCcccccCCCchhHHHHHhccCCCCchhhHHHHHHHHHH
Q 003136 473 DGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLI 551 (845)
Q Consensus 473 d~~~~~~~~~~~~~~~~~~~r~~l~~~Re~~Y~ilg~~~-~l~~~FY~~~~l~~l~~alf~~l~~l~~~~lr~ll~~~vr 551 (845)
.++|.++.+++.+. .+|+.|-.+ +.++...+..+...-+...+=.++..+++
T Consensus 700 -------------------------~v~e~~~~~l~~~~~~~~~~~~~~--l~~~~~~l~~~~~~~~~~~~l~l~~~li~ 752 (963)
T 2x19_B 700 -------------------------QVVEAVCAIFEKSVKTLLDDFAPM--VPQLCEMLGRMYSTIPQASALDLTRQLVH 752 (963)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHSSSTTGGG--HHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHhhccccccc--HHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 11111222222222 222222100 11111111110000000001111222222
Q ss_pred hhhccCChhhHHHHHHHHhHHHHHHHHHHHHhhHHHhhhhhcCCchhHHHHhhHHHHHHhHHHHHHHHHHhcCCCCCCCC
Q 003136 552 HMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIP 631 (845)
Q Consensus 552 plv~~CP~~~~~~~l~plL~~lf~~~~~rL~~~W~~i~~~~~~~~~~eE~leE~lLR~LTre~~~ll~~~~~~~~~~~~~ 631 (845)
-+- .... ....+.+++..++..+...+. .+ . .+ -.++..++..++..++.-.
T Consensus 753 ~f~--~~~~-~~~~~~~~l~~~~~~~l~~~~---------~~---~----~~---~pd~~~~~f~ll~~~~~~~------ 804 (963)
T 2x19_B 753 IFA--HEPA-HFPPIEALFLLVTSVTLTLFQ---------QG---P----RD---HPDIVDSFMQLLAQALKRK------ 804 (963)
T ss_dssp HHT--TCTT-TCHHHHHHHHHHHHHHHHHHH---------HC---T----TT---CHHHHHHHHHHHHHHHHHC------
T ss_pred HhC--CCcc-hHHHHHHHHHHHHHHHHHHHh---------hC---c----cc---CchHHHHHHHHHHHHHHhC------
Confidence 110 1111 112233344444443333222 00 0 00 1456667777777776421
Q ss_pred CCCCCCCcccccccccccchhhhhhhhhHhHhcCcCchhHHHHHHHhhhcccchhhhhHHHHhHHHHHHHhhhccchhhh
Q 003136 632 PIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELR 711 (845)
Q Consensus 632 ~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~ll~~~~i~~~~L~~~~~~l~w~Dt~~~~ka~~f~~~Lv~~~~~~~~~~l~ 711 (845)
...++..+.....++.++..++.-.|...+..++.|...++.... ..+.+.
T Consensus 805 ---------------------------~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~--~~~~~~ 855 (963)
T 2x19_B 805 ---------------------------PDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG--EVESVG 855 (963)
T ss_dssp ---------------------------GGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT--SSCHHH
T ss_pred ---------------------------cHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC--ChHHHH
Confidence 011122222256778888888886776677777777777664321 112232
Q ss_pred HH---HHHHHHHHHHHhhcccchHhhHHHHHHHHHHHHHHhcCCCc-hHHHHHH--hCC--CCCHHHHHHHHHHHhcCC-
Q 003136 712 QF---VSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDP-APRQVLL--SLP--CITPQDLLAFEDALTKTA- 782 (845)
Q Consensus 712 ~~---i~~~v~~a~L~~L~~~~~~~~~~~L~~L~~~iy~~l~~~~~-~~r~vL~--~lP--~i~~~~l~~f~~~L~~~~- 782 (845)
+| .+..++.+++.++..........++..++..++........ -..++|. .+| +++++..++|-++|.+.+
T Consensus 856 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~~ 935 (963)
T 2x19_B 856 KVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRERV 935 (963)
T ss_dssp HHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHHc
Confidence 22 26677777777776533333444555555555543221111 1334442 688 899999999999997665
Q ss_pred ChHHHHHHHHHHHhhhcCC
Q 003136 783 SPREQKQHMRSLLVLGTGN 801 (845)
Q Consensus 783 s~K~qr~~~k~LL~~~~g~ 801 (845)
..|.=|+.+++++..++|.
T Consensus 936 ~~~~f~~~l~~F~~~~r~~ 954 (963)
T 2x19_B 936 NKRRVKEMVKEFTLLCRGL 954 (963)
T ss_dssp CHHHHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHHHcCc
Confidence 7777899999999988774
No 3
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.78 E-value=5.1e-16 Score=193.43 Aligned_cols=601 Identities=13% Similarity=0.113 Sum_probs=344.8
Q ss_pred CHHHHHhhhccchHHHHHhHHHHHHHHHHh-h-hccccccccCCCCCcccCCCCCCCCccchhhhhhcccchhhHHHHHH
Q 003136 1 MSFQMLGYFQHFKIALHFQSLLFWLALMRD-L-MSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILD 78 (845)
Q Consensus 1 yL~~~L~~t~HpSl~ls~~~l~~W~~llr~-~-~~k~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~LL~ 78 (845)
|+++||.++.||+.-|+..+++||..++.. . .++.. . ..... .++++.|++
T Consensus 333 ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~-------------------~---~~~~~-----~~~l~~Ll~ 385 (980)
T 3ibv_A 333 LFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSK-------------------E---LSASL-----KEFLKSLLE 385 (980)
T ss_dssp THHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSC-------------------C---CCHHH-----HHHHHHHHH
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccc-------------------c---ccHHH-----HHHHHHHHH
Confidence 688999999999999999999999999987 2 11100 0 00112 278899999
Q ss_pred HHHHHHhhhcCCCCCCCCccccccccCCchhHHHHHhhHHHHHHHHhhcCchHHHH----HHHHHHHHHHhhcccCCCCc
Q 003136 79 ISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGV----KVSERVMAIINSLLISTMPA 154 (845)
Q Consensus 79 ~~~~rl~k~~~~~~~~~~~~~~~~DFds~~ef~~yR~~~~~iir~~~~~~P~~a~~----~~~~~l~~~l~~~~~~~~~s 154 (845)
++..|+.++++.+.+ ..+|+|++++|..||+++..+++.++.+.|...+. ++..++++.+.+. .+
T Consensus 386 ~li~k~~yp~d~~~~------~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~-----~~ 454 (980)
T 3ibv_A 386 AIIKKMKYDESQEWD------DDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLS-----PE 454 (980)
T ss_dssp HHHHTTSCCTTCCCC------CCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSC-----HH
T ss_pred HHHHHccCCCccccc------cccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhccc-----CC
Confidence 999998887664211 13477888899999999999999999999999999 5555555444210 12
Q ss_pred hhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHHHHhc---cCCCCchHHHHHHHHHHhhhhhhhcC
Q 003136 155 QDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLS---LKWTEPPLVVALGHYLDALGPFLKYY 231 (845)
Q Consensus 155 ~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~llq~lL~---~~~~dPll~~~~l~~L~~l~~~l~~~ 231 (845)
...-..||.-+.+-++--++........+. .+.... +..++..+++ .+...|.++..-.-+++.+..++..+
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~-~~~lp~----l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~ 529 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEV-DKSPTV----LSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE 529 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSS-SCCBCH----HHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcc-cchhHH----HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 333333443333333211111100000000 011112 3355555554 23456777777777777777788889
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCcc--ch----
Q 003136 232 PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRL--LR---- 305 (845)
Q Consensus 232 p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~L--s~---- 305 (845)
|++++++|+-++.. .....+. +.+|.+||++|.|+|+.....+.||++.|.+.++.++..+.. ..
T Consensus 530 ~~~l~~~L~~ll~~-----~gl~~~~----~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~ 600 (980)
T 3ibv_A 530 SAAIPALIEYFVGP-----RGIHNTN----ERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAP 600 (980)
T ss_dssp CTTHHHHHHHHTST-----TTTTCCC----TTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CS
T ss_pred chhHHHHHHHHhcc-----ccccCCC----hhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCccccc
Confidence 99999998877331 1111212 368999999999999999999999999999999877764321 11
Q ss_pred -------------hhHHHHHHHHHHHhc--CCCHHHHHHHHHHHhHHHHHhhchHhHhhhhcCCHHHHHHHhcCCcccch
Q 003136 306 -------------GEHNLLGEAFLVMAS--AAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWS 370 (845)
Q Consensus 306 -------------~E~~~L~EaLl~is~--~~~~~~q~~~L~~ll~P~~~~W~~~e~~~~~lss~~~f~~~~g~~~~~~~ 370 (845)
..+..|+|+.-.+.+ ..+.++|.+.++.++.|+.+.|...- +. .-++. ++.. .
T Consensus 601 ~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l-~~-~~~~~--------~~~~--~ 668 (980)
T 3ibv_A 601 VPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAAL-SS-DLSAL--------ENII--S 668 (980)
T ss_dssp SCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH-TT-SCC----------CHHH--H
T ss_pred ccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hh-cccCc--------cHHH--H
Confidence 147889999998875 34688999999999999999885321 11 11110 1111 4
Q ss_pred hHhhHHHHHHHHHhccccccccccccCCCCCcccccchhhhhhhhhhHHHHHHHHHHhccCccccCcCcHHHHHHccCCH
Q 003136 371 LFHTVTFFERALKRSGIRKANLNLQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSD 450 (845)
Q Consensus 371 ~~~~v~~~~~~Lkr~~~~~~~~~s~~~~~~~~~~~~P~~~~i~~iLP~lL~Llr~~h~l~~P~~~~~Lp~~~~~~~~~~~ 450 (845)
++|.+..++...| |++... ...+|+...+..+++-+++.+..++. +
T Consensus 669 i~~~i~al~~lak--gf~~~~-----------~~~~p~~~~f~~~~~~il~~l~~~~~--~------------------- 714 (980)
T 3ibv_A 669 VYCSLMAIGNFAK--GFPARG-----------SEEVAWLASFNKASDEIFLILDRMGF--N------------------- 714 (980)
T ss_dssp HHHHHHHHHHHHH--TSCSCC------------CCCSHHHHHHHHHHHHHHHHHHSCC--S-------------------
T ss_pred HHHHHHHHHHHhc--cCCccc-----------CCCCcHHHHHHHHHHHHHHHHHhcCC--c-------------------
Confidence 5565666666555 343221 01245556666666666654443210 0
Q ss_pred HHHhhhcCCCCCCCccccccccCCCccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhh-cCCcccccCCCchhHHHH
Q 003136 451 AEQFSLLGEGNPKFSRGAVAFADGSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLDSGSVVVA 529 (845)
Q Consensus 451 ~Er~~~lG~~~~~~sk~~~~~~d~~~~~~~~~~~~~~~~~~~r~~l~~~Re~~Y~ilg~~~-~l~~~FY~~~~l~~l~~a 529 (845)
..|||.|...+.-+- .+|.++ .|-++.+...
T Consensus 715 ----------------------------------------------~~irea~~~~~~r~i~~lg~~~--~p~lp~~i~~ 746 (980)
T 3ibv_A 715 ----------------------------------------------EDIRGAVRFTSGRIINVVGPDM--LPKVPQLISI 746 (980)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHTTTTHHHH--TTTHHHHHHH
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHHccHhH--HHHHHHHHHH
Confidence 033444444443333 444432 2333444444
Q ss_pred HhccCCCCchhhHHHHHHHHHHhhhccCChhhHHHHHHHHhHHHHHHHHHHHHhhHHHhhhhhcCCchhHHHHhhHHHHH
Q 003136 530 LMENIQSMEFRHIRQLVHSVLIHMVKFCPLDMWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRD 609 (845)
Q Consensus 530 lf~~l~~l~~~~lr~ll~~~vrplv~~CP~~~~~~~l~plL~~lf~~~~~rL~~~W~~i~~~~~~~~~~eE~leE~lLR~ 609 (845)
+..+.+.-+..-.=.+++.++.-|=+ +++ ..+..+|+|++.++...|.+ + ++.++|+ +--++
T Consensus 747 ll~~~~~~e~~~fL~l~~qli~~f~~----~~~-~~l~~ll~~l~~~if~~l~~--------~--~~~td~~---r~~~~ 808 (980)
T 3ibv_A 747 LLNSIDMNELVDVLSFISQLIHIYKD----NMM-EITNRMLPTLLMRIFSSLSA--------A--PQGTDDA---VKQND 808 (980)
T ss_dssp HHHHCCTTTHHHHHHHHHHHHHHTTT----TSH-HHHHHHHHHHHHHHHHHTTC--------------CCHH---HHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHhcC--------C--CCCcHHH---HHHHH
Confidence 44332222222222244444443333 332 33555666666666655542 1 1123443 24577
Q ss_pred HhHHHHHHHHHHhcCCCCCCCCCCCCCCCcccccccccccchhhhhhhhhHhHh--cCcCchhHHHHHHHhh-hcccchh
Q 003136 610 LTREICSLLSTMASSGLNNGIPPIEQSGHFYRVDVLSLKDLDAFASNSMVGFLL--KHKDLALPALQISLEA-FTWTDGE 686 (845)
Q Consensus 610 LTre~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~ll--~~~~i~~~~L~~~~~~-l~w~Dt~ 686 (845)
|-|.+..|+..++..+. ...++ +|....+.++..+++. ...+|+.
T Consensus 809 l~r~~~~fl~~i~~~~~--------------------------------~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~ 856 (980)
T 3ibv_A 809 LRKSYISFILQLLNKGF--------------------------------GSILFTEENQVYFDPLINSILHFANLVGEPA 856 (980)
T ss_dssp HHHHHHHHHHHHHHTTC--------------------------------TGGGGSHHHHTTHHHHHHHHHHHC-----CH
T ss_pred HHHHHHHHHHHHHhCCc--------------------------------hhhhcCCcchHHHHHHHHHHHHHhccCCChH
Confidence 99999999998887432 01111 1334455566655543 3358888
Q ss_pred hhhHHHHhHHHHHHHhhhcc-chhhhHHHHHHHHHHHHHhhcccch--HhhH-----HHHHHHHHHHHHHhcCCCchHHH
Q 003136 687 AVTKVSSFCSAVVLLAIQSN-NIELRQFVSKDLFSAIIRGLALESN--AVIS-----ADLVGLCREIFIYMCDRDPAPRQ 758 (845)
Q Consensus 687 ~~~ka~~f~~~Lv~~~~~~~-~~~l~~~i~~~v~~a~L~~L~~~~~--~~~~-----~~L~~L~~~iy~~l~~~~~~~r~ 758 (845)
+.+.|+.+...++..-..+. -+-+.+|+-+ +.+.|......+.| .|.| .|++.+...||...++ ..-+
T Consensus 857 ~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~---~~~~ 932 (980)
T 3ibv_A 857 TQKSSIALVSKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGD---IYKS 932 (980)
T ss_dssp HHHHHHHHHHHHHHC-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCH---HHHH
Confidence 88887787777776542211 2348999999 99999999988887 4654 7999999999998874 3455
Q ss_pred HHHh--CC--CCCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhhcCCc
Q 003136 759 VLLS--LP--CITPQDLLAFEDALTKTASPREQKQHMRSLLVLGTGNN 802 (845)
Q Consensus 759 vL~~--lP--~i~~~~l~~f~~~L~~~~s~K~qr~~~k~LL~~~~g~~ 802 (845)
.|.+ +| |+.++..+.|-++|. ....|.=|.-|+.++...+|.+
T Consensus 933 ~l~~~~lp~~~~~~~~~~~~~~~l~-~~~~k~f~~~~~~~~~~~~~~~ 979 (980)
T 3ibv_A 933 YLVTVYFPTVNFPDVMASEYLQALS-NLDSRSFKQFFQKFIQALKSGN 979 (980)
T ss_dssp HHHHTTTTC----CCHHHHHHHC-----------------CHHHHC--
T ss_pred HHHHhcCCcCCCCHHHHHHHHHHHh-ccchhhHHHHHHHHHHHhhcCC
Confidence 5644 56 678888899999994 3346666777888887776654
No 4
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.78 E-value=1e-15 Score=190.94 Aligned_cols=600 Identities=11% Similarity=0.111 Sum_probs=350.4
Q ss_pred CHHHHHhhhcc----c-hHHHHHhHHHHHHHHHHhhhccccccccCCCCCcccCCCCCCCCccchhhhhhcccchhhHHH
Q 003136 1 MSFQMLGYFQH----F-KIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGA 75 (845)
Q Consensus 1 yL~~~L~~t~H----p-Sl~ls~~~l~~W~~llr~~~~k~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (845)
|++.+|.++.| + +-.|+..++.||.++.+....... +........... +++..
T Consensus 349 ~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~-----------------~~~~~~~~~~~~-----~~~~~ 406 (971)
T 2x1g_F 349 IVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSN-----------------DEQKHKCWEYIK-----PLYAH 406 (971)
T ss_dssp HHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC------------------------CHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhccc-----------------ccchHHHHHHHH-----HHHHH
Confidence 46788999988 3 677899999999999875321110 000000011122 67778
Q ss_pred HHHHHHHHHhhhcCCCCCCCCccccccccCCchhHHHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCch
Q 003136 76 ILDISFQRLVKREKAPGTQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQ 155 (845)
Q Consensus 76 LL~~~~~rl~k~~~~~~~~~~~~~~~~DFds~~ef~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~ 155 (845)
|+++...++.+.++. ++...|-+..++|.+||+.+.++++.++.+.+...++.+.+++...+.+.... ++
T Consensus 407 ll~~l~~~~~~p~~~-------~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~---~~ 476 (971)
T 2x1g_F 407 LTRILVRKSEQPDEK-------SLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRH---PT 476 (971)
T ss_dssp HHHHHHHHTSCCCTT-------TTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHC---TT
T ss_pred HHHHHHHHhcCCCcc-------cccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCC---CC
Confidence 888888887432221 11111222245789999999999999999999888999999988887664211 24
Q ss_pred hhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccCCC--CchHHHHHHHHHHhhhhhhhcCCC
Q 003136 156 DLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLKWT--EPPLVVALGHYLDALGPFLKYYPD 233 (845)
Q Consensus 156 ~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~llq~lL~~~~~--dPll~~~~l~~L~~l~~~l~~~p~ 233 (845)
.....||....+-++..++.... . ..++.+++.+..+... +|.++...+.++..++.++..+|+
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~----------~----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~ 542 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE----------K----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA 542 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC--------------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----
T ss_pred cHHHHHHHHHHHHHHHhhcChhh----------h----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH
Confidence 56677777777777644433211 0 1234444444444433 799999999999999999998999
Q ss_pred chHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHH
Q 003136 234 AVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGE 313 (845)
Q Consensus 234 ~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~E 313 (845)
++++||+.|++.|. ..++.+||..|.++|+.....+.||++.|.+.+.+++.++.+...++..++|
T Consensus 543 ~l~~vl~~l~~~l~--------------~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ 608 (971)
T 2x1g_F 543 YIPPAINLLVRGLN--------------SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMF 608 (971)
T ss_dssp CHHHHHHHHHHHHH--------------SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--------------hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 99999999988762 1368999999999999999999999999999999999988899999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHhHHHHHhhchHhHhhhhcCCHHHHHHHhcCCcccchhHhhHHHHHHHHHhccccccccc
Q 003136 314 AFLVMASAAGIQQQQEVLAWLLEPLSQQWMQLEWQNNYLSEPLGLVRLCSDTSFMWSLFHTVTFFERALKRSGIRKANLN 393 (845)
Q Consensus 314 aLl~is~~~~~~~q~~~L~~ll~P~~~~W~~~e~~~~~lss~~~f~~~~g~~~~~~~~~~~v~~~~~~Lkr~~~~~~~~~ 393 (845)
++..+++..+.+.+...+..++.|+.+.|.+- +..+.. +++.+..+.+.++.+.++++-.+..... .
T Consensus 609 ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~------~~~~~~------~~~~~~~~~~~l~~L~~~~~~l~~~~~~-~ 675 (971)
T 2x1g_F 609 SIGKLMSLLRPEEIPKYLDIIVSPCFEELQAI------CQADSK------TPAARIRTIFRLNMISTLFSSLNTDVDE-Q 675 (971)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH------HTC---------CHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH------HhcCCC------ChhhHHHHHHHHHHHHHHHhhcCCCcCc-c
Confidence 99999875557888999999999999999633 111100 1111233444455555555543211100 0
Q ss_pred cccCCCCCcccccchhhhhhhhhhHHHHHHHHHHhccCccccCcCcHHHHHHccCCHHHHhhhcCCCCCCCccccccccC
Q 003136 394 LQSSSAENSAVMHPMASHLSWMLPPLLKLLRAIHSIWSPSISQLLPGEIKAAMTMSDAEQFSLLGEGNPKFSRGAVAFAD 473 (845)
Q Consensus 394 s~~~~~~~~~~~~P~~~~i~~iLP~lL~Llr~~h~l~~P~~~~~Lp~~~~~~~~~~~~Er~~~lG~~~~~~sk~~~~~~d 473 (845)
. .+. ...+|+.+.+..++|-+++++.. |. . .
T Consensus 676 -~---~~~-~~~~~~~~~~~~i~~~l~~~l~~----~~-----~-~---------------------------------- 706 (971)
T 2x1g_F 676 -A---TDQ-PIVQPVLLVMQRTMPIFKRIAEM----WV-----E-E---------------------------------- 706 (971)
T ss_dssp -------------CCHHHHHTTHHHHHHHHHH----TT-----T-C----------------------------------
T ss_pred -c---ccc-cCCCchHHHHHHHHHHHHHHHHh----cc-----c-c----------------------------------
Confidence 0 000 01345666666777766666542 11 0 0
Q ss_pred CCccCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhh-cCCcccccCCCchhHHHHHhccCCCCchhhHHHHHHHHHHh
Q 003136 474 GSQLDTSKEGYGEPNESDIRNWLKGVRDSGYNVLGLSA-TIGDPFFKSLDSGSVVVALMENIQSMEFRHIRQLVHSVLIH 552 (845)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~r~~l~~~Re~~Y~ilg~~~-~l~~~FY~~~~l~~l~~alf~~l~~l~~~~lr~ll~~~vrp 552 (845)
..++|.++.++|.+. .+|.+|= |-+..+...+...+..- ++ -..+.. +.-
T Consensus 707 -----------------------~~v~e~~~~~~~~~~~~~~~~~~--p~l~~~~~~l~~~~~~~--~~-~~~l~l-~~~ 757 (971)
T 2x1g_F 707 -----------------------IDVLEAACSAMKHAITNLRSSFQ--PMLQDLCLFIVASFQTR--CC-APTLEI-SKT 757 (971)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHC--C--THHHHHHHHHHHHCC----CC-HHHHHH-HHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhhhhhcc--ccHHHHHHHHHHHHhcC--Cc-hHHHHH-HHH
Confidence 034444555555544 4444441 11233333333332221 11 112221 222
Q ss_pred hhccCChh-hHHHHHHHHhHHHHHHHHHHHHhhHHHhhhhhcCCchhHHHHhhHHHHHHhHHHHHHHHHHhcCCCCCCCC
Q 003136 553 MVKFCPLD-MWEFWLEKLLNPLFIHCQQVLSSSWSSLMHEVAGSDLKVEVMEEKLLRDLTREICSLLSTMASSGLNNGIP 631 (845)
Q Consensus 553 lv~~CP~~-~~~~~l~plL~~lf~~~~~rL~~~W~~i~~~~~~~~~~eE~leE~lLR~LTre~~~ll~~~~~~~~~~~~~ 631 (845)
++...-.+ -....+.+++.+++.++...|.... + +..++ .-++.+++..|+..++.-..
T Consensus 758 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~------------~-~~~~~--~pd~~~~~f~ll~~~l~~~p----- 817 (971)
T 2x1g_F 758 AIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTP------------E-QNFSN--ISDTMETFFGCLTQIIKKIP----- 817 (971)
T ss_dssp HHTTCCC-----HHHHHHHHHHHHHHHHHHTSCT------------T-THHHH--THHHHHHHHHHHHHHHHSSG-----
T ss_pred HHHHhCCCcchHHHHHHHHHHHHHHHHHHHhccc------------c-cCCcc--CchHHHHHHHHHHHHHHhCc-----
Confidence 22222211 1223344555555555444442110 0 11111 23577778888887765320
Q ss_pred CCCCCCCcccccccccccchhhhhhhhhHhHhcCcCc-hhHHHHHHHhhhcccchhhhhHHHHhHHHHHHHhhhccchhh
Q 003136 632 PIEQSGHFYRVDVLSLKDLDAFASNSMVGFLLKHKDL-ALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIEL 710 (845)
Q Consensus 632 ~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~ll~~~~i-~~~~L~~~~~~l~w~Dt~~~~ka~~f~~~Lv~~~~~~~~~~l 710 (845)
..++.+ .. ...++.++..++.-+|...+..|+.|...++.... ....+
T Consensus 818 ----------------------------~~~~~s-~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~--~~~~~ 866 (971)
T 2x1g_F 818 ----------------------------QVLEDK-TLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSR--NHAHV 866 (971)
T ss_dssp ----------------------------GGGGCT-TSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred ----------------------------HHHcCC-cccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC--chHHH
Confidence 011122 33 56788888888887776677777777777665421 22334
Q ss_pred hHHH---HHHHHHHHHHhhcccchHhhHHHHHHHHHHHHHHhcCCC-chHHHHHH--hCC--CCCHHHHHHHHHHHhcCC
Q 003136 711 RQFV---SKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRD-PAPRQVLL--SLP--CITPQDLLAFEDALTKTA 782 (845)
Q Consensus 711 ~~~i---~~~v~~a~L~~L~~~~~~~~~~~L~~L~~~iy~~l~~~~-~~~r~vL~--~lP--~i~~~~l~~f~~~L~~~~ 782 (845)
.+++ +..+..+++.++..........+++.++..++..+.... +-..++|. .+| ++++++.++|-++|.+.+
T Consensus 867 ~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~ 946 (971)
T 2x1g_F 867 TEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKEK 946 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCSSSCHHHHHHHHHHHHHCS
T ss_pred HHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCcHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHH
Confidence 4444 455666666665433223333444555555544332111 12344554 577 489999999999996654
Q ss_pred -ChHHHHHHHHHHHhhhcCCc
Q 003136 783 -SPREQKQHMRSLLVLGTGNN 802 (845)
Q Consensus 783 -s~K~qr~~~k~LL~~~~g~~ 802 (845)
+.|.=|+.+|++...+.|..
T Consensus 947 ~~~r~~~~~~~~f~~~~r~~~ 967 (971)
T 2x1g_F 947 VNKRLLQQHLSEMAMKTRGLT 967 (971)
T ss_dssp SCHHHHHHHHHHHHHHHHC--
T ss_pred hChHhHHHHHHHHHHHHcCcc
Confidence 78888999999999987753
No 5
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.66 E-value=4.6e-12 Score=159.51 Aligned_cols=285 Identities=15% Similarity=0.184 Sum_probs=195.6
Q ss_pred HHHHHhhhccchHHHHHhHHHHHHHHHHhhhccccccccCCCCCcccCCCCCCCCccchhhhhhcccchhhHHHHHHHHH
Q 003136 2 SFQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISF 81 (845)
Q Consensus 2 L~~~L~~t~HpSl~ls~~~l~~W~~llr~~~~k~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~LL~~~~ 81 (845)
++.++..++|+...++..++.||.++.++....+. ..... .+++..|+.++.
T Consensus 346 l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~-----------------------~~~~~-----~~~l~~Lv~~ll 397 (1049)
T 3m1i_C 346 HQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPL-----------------------KKHIY-----EEICSQLRLVII 397 (1049)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTT-----------------------CGGGG-----HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchh-----------------------HHHHH-----HHHHHHHHHHHH
Confidence 57788899999999999999999999996211000 00011 278888999999
Q ss_pred HHHhhhcCCCCCC--CCccccccccCCchhHHHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHH
Q 003136 82 QRLVKREKAPGTQ--GPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAV 159 (845)
Q Consensus 82 ~rl~k~~~~~~~~--~~~~~~~~DFds~~ef~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~ 159 (845)
.+|.+.++.. .. ...++.+ +|+.++|-.++|+.+.++++.++.+.|...++++.+.+...+++. +. .
T Consensus 398 ~~m~~~ed~~-~~~dd~~e~~r-~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~------~~---~ 466 (1049)
T 3m1i_C 398 ENMVRPEEVL-VVENDEGEIVR-EFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGS------EW---S 466 (1049)
T ss_dssp HTCCCCTTCC-EEECTTSCEEE-CSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSS------SC---C
T ss_pred HhcCCCccee-eeeCCCCcchH-hhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCC------CC---C
Confidence 9986543211 00 0122222 244344434788899999999999999999999999999887531 11 2
Q ss_pred HhhHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHHHHhccC---CCCchHHHHHHHHHHhhhhhhhcCCCchH
Q 003136 160 MESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLLSLK---WTEPPLVVALGHYLDALGPFLKYYPDAVG 236 (845)
Q Consensus 160 wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~llq~lL~~~---~~dPll~~~~l~~L~~l~~~l~~~p~~l~ 236 (845)
|.. .|+.+.++-...... ..+....+...+...+..+.... ...|++......++..++.+++.+|++++
T Consensus 467 W~~----~eaal~algsia~~~---~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~ 539 (1049)
T 3m1i_C 467 WHN----INTLSWAIGSISGTM---SEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR 539 (1049)
T ss_dssp HHH----HHHHHHHHHHTTTSS---CHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH
T ss_pred HHH----HHHHHHHHHHHhccc---CchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 432 344444433322111 11111222222222222333221 13456555677788888899988999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhcccccc--------chHHHHHHHHHHHHHcCccchhhH
Q 003136 237 GVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSIL--------PHMKDIADTMAYLQREGRLLRGEH 308 (845)
Q Consensus 237 ~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~--------p~le~i~~~v~~L~~~~~Ls~~E~ 308 (845)
+||+++|+.+. ++ ...+|.+||.+|.++|...++.+. ||++.|.+.+..+... +...+.
T Consensus 540 ~vl~~ll~~l~-------~~----~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~--~~~~~~ 606 (1049)
T 3m1i_C 540 TVILKLFEFMH-------ET----HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD--LQPQQV 606 (1049)
T ss_dssp HHHHHHHHHTT-------SS----CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT--SCHHHH
T ss_pred HHHHHHHHHhc-------CC----CHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh--CCHHHH
Confidence 99999988763 11 268999999999999999888876 9999999888877664 778889
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHhHHHHHhhchH
Q 003136 309 NLLGEAFLVMASAA-GIQQQQEVLAWLLEPLSQQWMQL 345 (845)
Q Consensus 309 ~~L~EaLl~is~~~-~~~~q~~~L~~ll~P~~~~W~~~ 345 (845)
..++|++..+++.. +.+.+..+++.++.|+.+.|.+-
T Consensus 607 ~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~ 644 (1049)
T 3m1i_C 607 HTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI 644 (1049)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998744 46889999999999999999744
No 6
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.38 E-value=9.3e-09 Score=128.52 Aligned_cols=280 Identities=14% Similarity=0.222 Sum_probs=192.2
Q ss_pred HHHHHhhhccchHHHHHhHHHHHHHHHHhhhccccccccCCCCCcccCCCCCCCCccchhhhhhcccchhhHHHHHHHHH
Q 003136 2 SFQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISF 81 (845)
Q Consensus 2 L~~~L~~t~HpSl~ls~~~l~~W~~llr~~~~k~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~LL~~~~ 81 (845)
++.++..+.|+..-+...++.||..+..+....+. .+... .+++..|..+..
T Consensus 346 l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~-----------------------~~~~~-----~~~~~~L~~vli 397 (1023)
T 4hat_C 346 HQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPL-----------------------KKHIY-----EEICSQLRLVII 397 (1023)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTT-----------------------TGGGG-----HHHHHHHHHHHH
T ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchH-----------------------HHHHH-----HHHHHHHHHHHH
Confidence 46789999999999999999999999988432100 00011 277888888888
Q ss_pred HHHhhhcCCC---CCCCCcccccccc----CCchhHHHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCc
Q 003136 82 QRLVKREKAP---GTQGPLELWSDDF----EGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPA 154 (845)
Q Consensus 82 ~rl~k~~~~~---~~~~~~~~~~~DF----ds~~ef~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s 154 (845)
.|+.+.+.+. ++.| .|..+| |+.+.|..|| |++-.++++.+.+.++.+.+.+...+.+. .
T Consensus 398 ~km~~P~e~~ive~d~~---~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~~~~~~~~~~l~~~l~~~------~ 464 (1023)
T 4hat_C 398 ENMVRPEEVLVVENDEG---EIVREFVKESDTIQLYKSER----EVLVYLTHLNVIDTEEIMISKLARQIDGS------E 464 (1023)
T ss_dssp HSCCCCTTCCEEECTTS---CEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHHHHHHHHHHHHHHHHSST------T
T ss_pred HhcCCCcccccCCCCCc---cHHHHhccchHHHHHHHHHH----HHHHHHhccCHHHHHHHHHHHHHHHhcCC------C
Confidence 8887776431 1111 232334 2223466777 88888889999999998888888776542 1
Q ss_pred hhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChH-HHHHHHHHHHHHHHHHhccCCCCchHH--HHHHHHHHhhhhhhhcC
Q 003136 155 QDLAVMESMQSALENVVSAVFDGSNQFGGANSE-VQLSLSRIFEGLLRQLLSLKWTEPPLV--VALGHYLDALGPFLKYY 231 (845)
Q Consensus 155 ~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~-~~~~l~~~~~~llq~lL~~~~~dPll~--~~~l~~L~~l~~~l~~~ 231 (845)
+.-..-||..+.+-++..++ +.+ ...-+.+.+..|++.+=....+||-++ +...-++.....+++.+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~----------~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~ 534 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTM----------SEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 534 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSS----------CHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHcCC----------CchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555555554442211 111 123344445555543323334455433 34456777788899999
Q ss_pred CCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccc--------cchHHHHHHHHHHHHHcCcc
Q 003136 232 PDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSI--------LPHMKDIADTMAYLQREGRL 303 (845)
Q Consensus 232 p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l--------~p~le~i~~~v~~L~~~~~L 303 (845)
|+++++||++||+.+. ++ . ..+...||..|.++|.+....+ -||++.|.+...+... ++
T Consensus 535 ~~~L~~vl~~L~~~l~-------~~-~---~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~--~l 601 (1023)
T 4hat_C 535 WNFLRTVILKLFEFMH-------ET-H---EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA--DL 601 (1023)
T ss_dssp HHHHHHHHHHHHHHTT-------CS-C---HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT--TS
T ss_pred HHHHHHHHHHHHHHhh-------cC-C---HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHH--hC
Confidence 9999999999999773 11 1 3577889999999999977666 4899999877765544 68
Q ss_pred chhhHHHHHHHHHHHhcCC-CHHHHHHHHHHHhHHHHHhhchH
Q 003136 304 LRGEHNLLGEAFLVMASAA-GIQQQQEVLAWLLEPLSQQWMQL 345 (845)
Q Consensus 304 s~~E~~~L~EaLl~is~~~-~~~~q~~~L~~ll~P~~~~W~~~ 345 (845)
.......++||+-.+.+.. +.+.+.+.++.++.|....|.+-
T Consensus 602 ~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l 644 (1023)
T 4hat_C 602 QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTI 644 (1023)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHH
Confidence 8899999999999998854 56679999999999999999643
No 7
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.97 E-value=2.3e-05 Score=98.06 Aligned_cols=304 Identities=14% Similarity=0.165 Sum_probs=185.6
Q ss_pred HHHHHhhhccchHHHHHhHHHHHHHHHHhhh-ccccccccCCCCCcccCCCCCCCCccchhhhhhcccchhhHHHHHHHH
Q 003136 2 SFQMLGYFQHFKIALHFQSLLFWLALMRDLM-SKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDIS 80 (845)
Q Consensus 2 L~~~L~~t~HpSl~ls~~~l~~W~~llr~~~-~k~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~LL~~~ 80 (845)
++.++.++.||-.-|...++.||-.+..++. ..+... +.+..+ +++........+... .+++..|..+.
T Consensus 353 l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~----~~~~~~-~~~~~~~~~~~~~~y-----~~i~~~L~~vl 422 (1073)
T 3gjx_A 353 LHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFST----SASPLL-SGSQHFDIPPRRQLY-----LTVLSKVRLLM 422 (1073)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCC----CCSSCT-TSSCCSCSCHHHHTT-----HHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccc----cccccc-cccccccchhHHHHH-----HHHHHHHHHHH
Confidence 4567899999999999999999999999833 221100 000000 000000000011112 26777788777
Q ss_pred HHHHhhhcCCCC-CCCCccccccccCCchhHHHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHH
Q 003136 81 FQRLVKREKAPG-TQGPLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAV 159 (845)
Q Consensus 81 ~~rl~k~~~~~~-~~~~~~~~~~DFds~~ef~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~ 159 (845)
..||-|++.+-. .-...+..+ ||--+.+-.+.++-+.|++-.++++.+..+++.+.+.+...++.. ....-.
T Consensus 423 I~~m~~P~ev~i~e~e~ge~~r-e~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~------~~sW~~ 495 (1073)
T 3gjx_A 423 VSRMAKPEEVLVVENDQGEVVR-EFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGT------EWSWKN 495 (1073)
T ss_dssp HHTCCCSCCEEEEECSSSCEEE-EECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSC------CCCHHH
T ss_pred HHhcCCCccccccCcccchHHH-HHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC------CCCHHH
Confidence 777777665210 000011111 221111113566678888888889999999998888888775431 112222
Q ss_pred HhhHHHHHHHHHHHHhcCCCCCCCCChHHH-HHHHHHHHHHHHHHhccCCCCc--hHHHHHHHHHHhhhhhhhcCCCchH
Q 003136 160 MESMQSALENVVSAVFDGSNQFGGANSEVQ-LSLSRIFEGLLRQLLSLKWTEP--PLVVALGHYLDALGPFLKYYPDAVG 236 (845)
Q Consensus 160 wea~~~~lE~vl~~~~~~~~~~~~~~~~~~-~~l~~~~~~llq~lL~~~~~dP--ll~~~~l~~L~~l~~~l~~~p~~l~ 236 (845)
.||.-..+-++ .. . . ..+.. .-+.+.+..|++.+=....+|. ++.+...=++..+..+++.+|+++.
T Consensus 496 lea~~~aigaI----ag-~--~---~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~ 565 (1073)
T 3gjx_A 496 LNTLCWAIGSI----SG-A--M---HEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK 565 (1073)
T ss_dssp HHHHHHHHHHT----TT-S--S---CHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH
T ss_pred HhHHHHHHHHH----HC-c--C---CcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH
Confidence 33333333333 21 1 1 11111 2233334444433322233343 3444443467778889999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccc--------cchHHHHHHHHHHHHHcCccchhhH
Q 003136 237 GVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSI--------LPHMKDIADTMAYLQREGRLLRGEH 308 (845)
Q Consensus 237 ~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l--------~p~le~i~~~v~~L~~~~~Ls~~E~ 308 (845)
.|++|||+.+. + + . +.+...||..|.++|.+..+.+ .|+++.|.+..... .+++.....
T Consensus 566 ~vl~~L~~~m~---~----~-~---~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~--~~~l~~~~~ 632 (1073)
T 3gjx_A 566 TVVNKLFEFMH---E----T-H---DGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTI--ICDLQPQQV 632 (1073)
T ss_dssp HHHHHHHHHTT---C----C-S---TTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHH--HTTCCHHHH
T ss_pred HHHHHHHHHHh---c----C-C---HHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHH--HHhcCHHHH
Confidence 99999998653 1 1 1 3677889999999999987776 46888887666532 357899999
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHhHHHHHhhchH
Q 003136 309 NLLGEAFLVMASAA-GIQQQQEVLAWLLEPLSQQWMQL 345 (845)
Q Consensus 309 ~~L~EaLl~is~~~-~~~~q~~~L~~ll~P~~~~W~~~ 345 (845)
..|+||+-.+.+.. +...+.+.++.++.|..+.|.+-
T Consensus 633 ~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l 670 (1073)
T 3gjx_A 633 HTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSI 670 (1073)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999998855 44568999999999999999643
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.07 E-value=0.0073 Score=73.84 Aligned_cols=268 Identities=14% Similarity=0.175 Sum_probs=159.7
Q ss_pred HHHHhhhccchHHHHHhHHHHHHHHHHhhhccccccccCCCCCcccCCCCCCCCccchhhhhhcccchhhHHHHHHHHHH
Q 003136 3 FQMLGYFQHFKIALHFQSLLFWLALMRDLMSKTKVAHSTGDGSTVNNADSGSGKVDSRKMRILSFLNDDISGAILDISFQ 82 (845)
Q Consensus 3 ~~~L~~t~HpSl~ls~~~l~~W~~llr~~~~k~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~LL~~~~~ 82 (845)
+.++...+|+.-.|+..++.+|.++-++...+.. +. ..+..++.+...
T Consensus 259 ~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~---------------------------~~-----~~~~~l~p~ll~ 306 (852)
T 4fdd_A 259 EYMLQRTQDQDENVALEACEFWLTLAEQPICKDV---------------------------LV-----RHLPKLIPVLVN 306 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHH---------------------------HT-----TTHHHHHHHHHH
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHH---------------------------HH-----HHHHHHHHHHHH
Confidence 4567788899889999999999997665111100 11 344455555555
Q ss_pred HHhhhcCCCCCCCCccccccc----cCCchhH--HHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchh
Q 003136 83 RLVKREKAPGTQGPLELWSDD----FEGKGDF--SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQD 156 (845)
Q Consensus 83 rl~k~~~~~~~~~~~~~~~~D----Fds~~ef--~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~ 156 (845)
.+...+.. -++++.| -++++++ .+.|+-..+.+..++...|...+..+...+...+.++
T Consensus 307 ~l~~~e~d------~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~--------- 371 (852)
T 4fdd_A 307 GMKYSDID------IILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH--------- 371 (852)
T ss_dssp HTSCCHHH------HHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCS---------
T ss_pred HcCCcHhH------HHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC---------
Confidence 55332210 0011111 1111112 3567777777777777777777777777777776542
Q ss_pred hHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHHHHHHHh-ccCCCCchHHHHHHHHHHhhhhhhhc--CCC
Q 003136 157 LAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEGLLRQLL-SLKWTEPPLVVALGHYLDALGPFLKY--YPD 233 (845)
Q Consensus 157 ~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~llq~lL-~~~~~dPll~~~~l~~L~~l~~~l~~--~p~ 233 (845)
.|..-...+.++ ..+..+.. .... ..+..++..++ .++-.+|.++.....++..++..+.. ...
T Consensus 372 --~~~~R~aa~~al-g~i~~~~~------~~~~----~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 438 (852)
T 4fdd_A 372 --EWVVKESGILVL-GAIAEGCM------QGMI----PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT 438 (852)
T ss_dssp --SHHHHHHHHHHH-HHTTTTTH------HHHG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT
T ss_pred --CHHHHHHHHHHH-HHHHhcch------HHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHH
Confidence 133333333332 22222110 0111 11233333333 12445678888777777777776643 356
Q ss_pred chHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHH
Q 003136 234 AVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGE 313 (845)
Q Consensus 234 ~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~E 313 (845)
++..++..+++.+. ++ + ..+|.+|+..|-.+|......+.||++.+.+.+..++... .......+++
T Consensus 439 ~~~~ll~~L~~~L~-------d~-~---~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~--~~~~~~~~~~ 505 (852)
T 4fdd_A 439 YLKPLMTELLKRIL-------DS-N---KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY--QHKNLLILYD 505 (852)
T ss_dssp THHHHHHHHHHHHT-------CS-S---HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-------CC-C---HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHh--ChHHHHHHHH
Confidence 77888888877664 11 1 4899999999999999988889999999988887666543 3444456788
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHhHHHHHhhc
Q 003136 314 AFLVMASAA-GIQQQQEVLAWLLEPLSQQWM 343 (845)
Q Consensus 314 aLl~is~~~-~~~~q~~~L~~ll~P~~~~W~ 343 (845)
++-.++... +.-.+.+++..++.++.+.|.
T Consensus 506 ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~ 536 (852)
T 4fdd_A 506 AIGTLADSVGHHLNKPEYIQMLMPPLIQKWN 536 (852)
T ss_dssp HHHHHHHHHGGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHH
Confidence 887776422 222336688899999988884
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.51 E-value=0.08 Score=63.98 Aligned_cols=199 Identities=12% Similarity=0.017 Sum_probs=124.9
Q ss_pred HHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHH
Q 003136 112 QYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLS 191 (845)
Q Consensus 112 ~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~ 191 (845)
+.|....+.+..++...+...+..+...+...+++. .|..-...+.++ ..+.+.. .. ..
T Consensus 346 ~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~-----------~~~~r~~a~~~l-~~i~~~~------~~---~~ 404 (861)
T 2bpt_A 346 NVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITAD-----------NWRNREAAVMAF-GSIMDGP------DK---VQ 404 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS-----------SHHHHHHHHHHH-HHTSSSS------CH---HH
T ss_pred cHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCC-----------ChhHHHHHHHHH-HHHHcCC------CH---HH
Confidence 667777777777776666666666666666665431 154333333333 3333211 11 11
Q ss_pred HHHHHHHHHHHHhc-cCCCCchHHHHHHHHHHhhhhhhhc---CCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHH
Q 003136 192 LSRIFEGLLRQLLS-LKWTEPPLVVALGHYLDALGPFLKY---YPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQ 267 (845)
Q Consensus 192 l~~~~~~llq~lL~-~~~~dPll~~~~l~~L~~l~~~l~~---~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~ 267 (845)
+...++.++..++. ++-.+|.++...+.++..+..++.. .++++..++..+++.+. ++ ..+|..
T Consensus 405 ~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~-------~~-----~~v~~~ 472 (861)
T 2bpt_A 405 RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ-------DH-----PKVATN 472 (861)
T ss_dssp HHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT-------SC-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhc-------cC-----hHHHHH
Confidence 22234444444442 2334677787777777777776643 25678888888877763 11 378999
Q ss_pred HHHHHHHHHhhcc----ccccchHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHHhhc
Q 003136 268 ICTSFIRIAKTSD----KSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQQWM 343 (845)
Q Consensus 268 a~s~Lirla~~~~----~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~~~~~~~q~~~L~~ll~P~~~~W~ 343 (845)
||..|..++.... ..+.||++.+...+-+++.+......-|....+++-.++...+.+ ...++..++.++.+.|.
T Consensus 473 a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~~l~ 551 (861)
T 2bpt_A 473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMDKLG 551 (861)
T ss_dssp HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHHHHH
Confidence 9999999998853 778899999988777666654333445777788888887644433 45667778888887775
Q ss_pred h
Q 003136 344 Q 344 (845)
Q Consensus 344 ~ 344 (845)
+
T Consensus 552 ~ 552 (861)
T 2bpt_A 552 Q 552 (861)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.39 E-value=0.31 Score=58.90 Aligned_cols=200 Identities=9% Similarity=0.011 Sum_probs=120.1
Q ss_pred HHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHH
Q 003136 112 QYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLS 191 (845)
Q Consensus 112 ~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~ 191 (845)
+.|.-..+.+..++...+...+..+...+...+.++ .|..-...+.++ ..+..+. + .......
T Consensus 343 ~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~-----------~~~~r~~a~~~l-~~i~~~~---~--~~~~~~~ 405 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP-----------DWRYRDAAVMAF-GCILEGP---E--PSQLKPL 405 (876)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS-----------SHHHHHHHHHHH-HHTSSSS---C--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCC-----------ChHHHHHHHHHH-HHHHcCC---C--HHHHHHH
Confidence 778888888888877777666666666665554332 143333333322 2222211 1 0111122
Q ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhc---CCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHH
Q 003136 192 LSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKY---YPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQI 268 (845)
Q Consensus 192 l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~---~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a 268 (845)
+.+.+..+++.+ +-.+|.++..-+..+..+...... .++++..++..+++.+. + . ..+|.+|
T Consensus 406 ~~~~l~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~-------~--~---~~v~~~a 470 (876)
T 1qgr_A 406 VIQAMPTLIELM---KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS-------A--E---PRVASNV 470 (876)
T ss_dssp HHHHHHHHHHHH---TCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT-------S--C---HHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc-------C--C---HHHHHHH
Confidence 222233333222 334567776666666555554433 34678888888888763 1 1 3579999
Q ss_pred HHHHHHHHhhcc--------------ccccchHHHHHHHHHHHHHcCcc-chhhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003136 269 CTSFIRIAKTSD--------------KSILPHMKDIADTMAYLQREGRL-LRGEHNLLGEAFLVMASAAGIQQQQEVLAW 333 (845)
Q Consensus 269 ~s~Lirla~~~~--------------~~l~p~le~i~~~v~~L~~~~~L-s~~E~~~L~EaLl~is~~~~~~~q~~~L~~ 333 (845)
+..|.+++.... ..+.||++.+...+.+++..... ...-+...+|++-.++...+. ....++..
T Consensus 471 ~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~~~ 549 (876)
T 1qgr_A 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK-DCYPAVQK 549 (876)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS-TTHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch-hhHHHHHH
Confidence 999999998754 45889999988877766554321 123345688888888765443 34568889
Q ss_pred HhHHHHHhhch
Q 003136 334 LLEPLSQQWMQ 344 (845)
Q Consensus 334 ll~P~~~~W~~ 344 (845)
++.++.+.|.+
T Consensus 550 l~~~l~~~l~~ 560 (876)
T 1qgr_A 550 TTLVIMERLQQ 560 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888863
No 11
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.52 E-value=0.032 Score=69.32 Aligned_cols=252 Identities=13% Similarity=0.120 Sum_probs=143.4
Q ss_pred hhHHHHH-HHHHHHHhhhcCCCCCCC--CccccccccCCchhHHHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhc
Q 003136 71 DISGAIL-DISFQRLVKREKAPGTQG--PLELWSDDFEGKGDFSQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSL 147 (845)
Q Consensus 71 ~~~~~LL-~~~~~rl~k~~~~~~~~~--~~~~~~~DFds~~ef~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~ 147 (845)
+++..|+ .+....|.-.+...+..+ ..+|.+.|.|+ +|+.+.|+-..++++.++...+...+..+.+.+...++..
T Consensus 333 ~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~-~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~ 411 (960)
T 1wa5_C 333 SAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG-SDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQY 411 (960)
T ss_dssp HHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC-----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCc-ccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHh
Confidence 5677777 455665532222111100 13354555553 4556899999999999999999888877777777777643
Q ss_pred ccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHH-HHHHHhccCCCCchHHHHHHHHHHhhhh
Q 003136 148 LISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLSLSRIFEG-LLRQLLSLKWTEPPLVVALGHYLDALGP 226 (845)
Q Consensus 148 ~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~l~~~~~~-llq~lL~~~~~dPll~~~~l~~L~~l~~ 226 (845)
... .++....=||....+-++..+............. ...+...+.. ++..+-.-+...|.++..-+.++..+..
T Consensus 412 ~~~--~~~~w~~reaal~algaia~~~~~~~~~~~~~~~--~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~ 487 (960)
T 1wa5_C 412 MSD--PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNN--LLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRN 487 (960)
T ss_dssp HC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCT--TCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGG
T ss_pred ccC--cchhHHHHHHHHHHHHHHHHHhccccCCcccccc--cccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHh
Confidence 211 1234455577777776664321100000110000 0011111222 2222322222478999887777777777
Q ss_pred hhhcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhh-----------ccccccchHHHHHHHHH
Q 003136 227 FLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKT-----------SDKSILPHMKDIADTMA 295 (845)
Q Consensus 227 ~l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~-----------~~~~l~p~le~i~~~v~ 295 (845)
.+ .|+.+..++..++..|. ++ ...+|.+||..|.+++.. ....+.||++.+.+.+-
T Consensus 488 ~~--~~~~l~~~l~~l~~~L~-------d~----~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~ 554 (960)
T 1wa5_C 488 QL--TKAQLIELMPILATFLQ-------TD----EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLI 554 (960)
T ss_dssp GS--CHHHHHHHHHHHHHHTT-------CS----CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHH
T ss_pred hC--CHHHHHHHHHHHHHHhC-------CC----ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHH
Confidence 55 35667777777766553 11 257899999999999973 24569999999988887
Q ss_pred HHHHcCc---cchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHhHHHHHhhc
Q 003136 296 YLQREGR---LLRGEHNLLGEAFLVMAS--AAGIQQQQEVLAWLLEPLSQQWM 343 (845)
Q Consensus 296 ~L~~~~~---Ls~~E~~~L~EaLl~is~--~~~~~~q~~~L~~ll~P~~~~W~ 343 (845)
.++.+.. ....|...+++++-.++. ...+. .++..++.++...|.
T Consensus 555 ~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~---p~~~~l~~~L~~~l~ 604 (960)
T 1wa5_C 555 ALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQ---PLFPQLLAQFIEIVT 604 (960)
T ss_dssp HHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTG---GGHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHH
Confidence 7777641 122255678888877654 22222 245566677766664
No 12
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=79.70 E-value=65 Score=35.35 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhccCC---CCchHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHH
Q 003136 190 LSLSRIFEGLLRQLLSLKW---TEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARL 266 (845)
Q Consensus 190 ~~l~~~~~~llq~lL~~~~---~dPll~~~~l~~L~~l~~~l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr 266 (845)
..+.....++++.||.+=. .++.++ ..++.+|+...|.||.++..|++-+...-...|.. +....++.+|+
T Consensus 217 ~~Le~EA~~lLd~LL~~l~~~~iss~~l---~a~lnsLa~Iak~RP~~~~rIl~aL~~l~~n~p~t---~sk~qvkSv~K 290 (386)
T 3o2t_A 217 NVLWEEGKAALEQLLKFMVHPAISSINL---TTALGSLANIARQRPMFMSEVIQAYETLHANLPPT---LAKSQVSSVRK 290 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--CCHHHH---HHHHHHHHHHHHHSGGGHHHHHHHHHHHHHCC-------CGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccccHHH---HHHHHHHHHHHHhcHHHHHHHHHHHHhhcCCCCcc---HHHHHHHHHHH
Confidence 3455556666666664322 334333 44889999999999999999988775432223331 24457899999
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHHHHH
Q 003136 267 QICTSFIRIAKTSDKSILPHMKDIADTMAY 296 (845)
Q Consensus 267 ~a~s~Lirla~~~~~~l~p~le~i~~~v~~ 296 (845)
..=..|+.+-+ +|.. .|+-..|.+.+.+
T Consensus 291 tLR~~Ll~lLK-~p~s-~~~~~~I~~~L~~ 318 (386)
T 3o2t_A 291 NLKLHLLSVLK-HPAS-LEFQAQITTLLVD 318 (386)
T ss_dssp HHHHHHHHHHT-SGGG-GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCc-hhhHHHHHHHHHH
Confidence 99999999777 4444 3776777666664
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=79.55 E-value=72 Score=38.26 Aligned_cols=103 Identities=10% Similarity=0.063 Sum_probs=68.3
Q ss_pred CCCCchHHHHHHHHHHhhhhhhh-cCCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccc
Q 003136 207 KWTEPPLVVALGHYLDALGPFLK-YYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILP 285 (845)
Q Consensus 207 ~~~dPll~~~~l~~L~~l~~~l~-~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p 285 (845)
+..+|-.+..-+..+..+...+. ...+++..++..++..+.. |. .-+.+|..|+..+-||+..+|..+.|
T Consensus 680 ~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~-~~--------~~~~~~~~a~~~igrl~~~~~~~~~~ 750 (852)
T 4fdd_A 680 NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINR-PN--------TPKTLLENTAITIGRLGYVCPQEVAP 750 (852)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTC-SS--------CCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred CccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCC-CC--------CCchHHHHHHHHHHHHHHhCHHHhCc
Confidence 55566666554444444443332 2356778888888887752 11 12579999999999999999999999
Q ss_pred hHHHHHHHH-HHHHHcCccchhhHHHHHHHHHHHhc
Q 003136 286 HMKDIADTM-AYLQREGRLLRGEHNLLGEAFLVMAS 320 (845)
Q Consensus 286 ~le~i~~~v-~~L~~~~~Ls~~E~~~L~EaLl~is~ 320 (845)
|++.+.... ..|-. .-+..|+..-+..|..+..
T Consensus 751 ~l~~~~~~~~~~l~~--~~d~~e~~~a~~~l~~li~ 784 (852)
T 4fdd_A 751 MLQQFIRPWCTSLRN--IRDNEEKDSAFRGICTMIS 784 (852)
T ss_dssp GHHHHHHHHHHHHHT--SCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHH
Confidence 999985543 43322 2335578877777777654
No 14
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=66.59 E-value=21 Score=41.66 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcCCCchH--HHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHH
Q 003136 194 RIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVG--GVISKLFELLTSLPFVFKDPSTNSARHARLQICTS 271 (845)
Q Consensus 194 ~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p~~l~--~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~ 271 (845)
+.+..-+.++|.-+-.+|-++++ ...++..+.+.+|+.++ ..++++.+.|. +. + -.++.+|.+.
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~---A~~al~kl~~~~p~~~~~~~~~~~l~~lL~-------d~-d---~~V~~~a~~~ 210 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQS---AALCLLRLYRTSPDLVPMGDWTSRVVHLLN-------DQ-H---LGVVTAATSL 210 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHH---HHHHHHHHHHHCGGGCCCCSCHHHHHHHTT-------CS-C---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHH---HHHHHHHHHHhChhhcCchhHHHHHHHHhC-------CC-C---ccHHHHHHHH
Confidence 33444455555335678998887 55566667778888888 78888888763 11 1 2688999999
Q ss_pred HHHHHhhccccccchHHHHHHHHHHHHHcCcc-----------chhhHHHHHHHHHHHh
Q 003136 272 FIRIAKTSDKSILPHMKDIADTMAYLQREGRL-----------LRGEHNLLGEAFLVMA 319 (845)
Q Consensus 272 Lirla~~~~~~l~p~le~i~~~v~~L~~~~~L-----------s~~E~~~L~EaLl~is 319 (845)
|..+|...|+.+.+.+..+.+.+.+++..+.. ++-=++.+.+.|-.++
T Consensus 211 l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~ 269 (621)
T 2vgl_A 211 ITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP 269 (621)
T ss_dssp HHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC
Confidence 99999999998889988888888888776544 3445555555555443
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=66.46 E-value=1.7e+02 Score=34.56 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=68.8
Q ss_pred chHHHHHHHHHHhhhhhhhc-CCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHH
Q 003136 211 PPLVVALGHYLDALGPFLKY-YPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKD 289 (845)
Q Consensus 211 Pll~~~~l~~L~~l~~~l~~-~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~ 289 (845)
+.++...+..+..+..-.+. ..+++..++..++..+.. . ...++|..++..+-.|++.....+.|+++.
T Consensus 622 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~-------~---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 691 (876)
T 1qgr_A 622 GGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN-------Y---AEYQVCLAAVGLVGDLCRALQSNIIPFCDE 691 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH-------C---TTHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-------c---chHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34555545555444443222 234455555555554431 1 124688899999999999988889999999
Q ss_pred HHHHHHHHHHcCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHH
Q 003136 290 IADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQ 340 (845)
Q Consensus 290 i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~~~~~~~q~~~L~~ll~P~~~ 340 (845)
+...+-..+.++......+.....++--++...+.+ -..++..++.++.+
T Consensus 692 i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~-~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE-FKKYLEVVLNTLQQ 741 (876)
T ss_dssp HHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG-GGGGHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchh-HHHHHHHHHHHHHH
Confidence 988887777764444445555555554443311111 12255666655544
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=62.84 E-value=2.4e+02 Score=33.19 Aligned_cols=163 Identities=13% Similarity=0.199 Sum_probs=86.7
Q ss_pred hhHHHHHhhHHHHHHHHhhcCchHHHHH---HHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCC
Q 003136 108 GDFSQYRSRLLELVKFVASNKPLVAGVK---VSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGA 184 (845)
Q Consensus 108 ~ef~~yR~~~~~iir~~~~~~P~~a~~~---~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~ 184 (845)
+++...|....+.+..++...+.....+ +...+...+++. .+. .+. +.....+..+...+-.
T Consensus 567 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-----~~~-~v~-~~~~~~l~~l~~~~~~-------- 631 (861)
T 2bpt_A 567 QSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK-----DSA-FIE-DDVFYAISALAASLGK-------- 631 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHST-----TGG-GTH-HHHHHHHHHHHHHHGG--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccC-----CCC-cHH-HHHHHHHHHHHHHHhh--------
Confidence 4456788888888887776655433233 333333333332 111 222 3333344444433221
Q ss_pred ChHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcC-CCchHHHHHHHHHHhcCCCCCCCCCCchHHHH
Q 003136 185 NSEVQLSLSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYY-PDAVGGVISKLFELLTSLPFVFKDPSTNSARH 263 (845)
Q Consensus 185 ~~~~~~~l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~-p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~ 263 (845)
+. ...+...+..+++ .+ +..++.++...+.++..+...+... .+++..++..+++.+.. +. .. .+
T Consensus 632 ~~--~~~l~~i~~~l~~-~l--~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~-~~-----~~---~~ 697 (861)
T 2bpt_A 632 GF--EKYLETFSPYLLK-AL--NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISN-PN-----AR---RE 697 (861)
T ss_dssp GG--HHHHHHHHHHHHH-HH--HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHC-TT-----CC---TT
T ss_pred hH--HHHHHHHHHHHHH-Hh--ccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCC-cc-----cc---Hh
Confidence 11 1111122333333 33 4567777777666555554433211 12344555555554431 10 11 26
Q ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHH
Q 003136 264 ARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQR 299 (845)
Q Consensus 264 ~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~ 299 (845)
+|..++..|-.++...+..+.||++.+...+.+...
T Consensus 698 vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~ 733 (861)
T 2bpt_A 698 LKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQN 733 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999777765444
No 17
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=54.28 E-value=3.1e+02 Score=34.16 Aligned_cols=172 Identities=9% Similarity=0.080 Sum_probs=84.4
Q ss_pred HHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCC-Ch----
Q 003136 112 QYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGA-NS---- 186 (845)
Q Consensus 112 ~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~-~~---- 186 (845)
..|.-..+.+..++...|.....++..-+..++... ......+...+...+.+. ++.+.....+-... ..
T Consensus 348 ~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l----~d~~~~Vr~~a~~~l~~l-~~~~~~~~~~~~~~~~~~~~~ 422 (1230)
T 1u6g_C 348 KVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRF----KEREENVKADVFHAYLSL-LKQTRPVQSWLCDPDAMEQGE 422 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTT----SCSSSHHHHHHHHHHHHH-HHHHCCC------------CC
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHc----CCCchHHHHHHHHHHHHH-HHHhccccccccCcccccccc
Confidence 568888888888877777533333333232222211 122344445554443332 33322100000000 00
Q ss_pred HHHHHHHHHHHHHHHHHhc-cCCCCchHHHHHHHHHHhhhhhhhcCCC----chHHHHHHHHHHhcCCCCCCCCCCchHH
Q 003136 187 EVQLSLSRIFEGLLRQLLS-LKWTEPPLVVALGHYLDALGPFLKYYPD----AVGGVISKLFELLTSLPFVFKDPSTNSA 261 (845)
Q Consensus 187 ~~~~~l~~~~~~llq~lL~-~~~~dPll~~~~l~~L~~l~~~l~~~p~----~l~~VL~klf~~l~~~p~~~~~~~~~~v 261 (845)
.....+...+..++..++. ++-.++..+.. ++.+++.+++..++ ++..++..|++.|. . +.. +
T Consensus 423 ~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~---~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~---d----~~~--~ 490 (1230)
T 1u6g_C 423 TPLTMLQSQVPNIVKALHKQMKEKSVKTRQC---CFNMLTELVNVLPGALTQHIPVLVPGIIFSLN---D----KSS--S 490 (1230)
T ss_dssp CHHHHHHHHTTHHHHHHHHHTTCSCHHHHHH---HHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTT---C----SSS--C
T ss_pred chHHHHHHHhhHHHHHHHHHhccCCHHHHHH---HHHHHHHHHHHchhhhHHHHHHHHHHHHHHHc---C----CCC--c
Confidence 0011222233334433332 34445544433 55566666655554 44555555555543 1 111 4
Q ss_pred HHHHHHHHHHHHHHHhhc-cccccchHHHHHHHHHHHHHc
Q 003136 262 RHARLQICTSFIRIAKTS-DKSILPHMKDIADTMAYLQRE 300 (845)
Q Consensus 262 ~~~Rr~a~s~Lirla~~~-~~~l~p~le~i~~~v~~L~~~ 300 (845)
+++|..++..+..++..+ +..+.|+++.+...+-..+.+
T Consensus 491 ~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d 530 (1230)
T 1u6g_C 491 SNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD 530 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcc
Confidence 678999999999998764 555888888876666544443
No 18
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=50.83 E-value=1.3e+02 Score=30.25 Aligned_cols=142 Identities=12% Similarity=0.005 Sum_probs=77.3
Q ss_pred CchHHHHHHHHHHhhhhhhh--cCC-CchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhc-cccccc
Q 003136 210 EPPLVVALGHYLDALGPFLK--YYP-DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTS-DKSILP 285 (845)
Q Consensus 210 dPll~~~~l~~L~~l~~~l~--~~p-~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~-~~~l~p 285 (845)
++.++..-+.++..+..-+. ... .+...+|-.|++.+. + .. ..+|.++...+..++... |....+
T Consensus 74 n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~-------d-kk---~~V~~aa~~al~~i~~~~~~~~~~~ 142 (249)
T 2qk1_A 74 NIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTK-------E-KK---PSVIEAIRKALLTICKYYDPLASSG 142 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGG-------C-CC---HHHHHHHHHHHHHHHHHSCTTCTTC
T ss_pred CHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHc-------C-CC---HHHHHHHHHHHHHHHHHccccccCC
Confidence 45566676777777776554 444 566777777777653 1 11 468889999999999875 433334
Q ss_pred hHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhcCCCH--HHHHHHH-HHHhHHHHHhhc--hHhHhhhhcCCHHHHHH
Q 003136 286 HMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGI--QQQQEVL-AWLLEPLSQQWM--QLEWQNNYLSEPLGLVR 360 (845)
Q Consensus 286 ~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~~~~~--~~q~~~L-~~ll~P~~~~W~--~~e~~~~~lss~~~f~~ 360 (845)
+++.+.+.+-..+.++ ....|.....++.-+....+. ++=...+ ..++..+.+... +++.+..+......++.
T Consensus 143 ~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 143 RNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp TTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4888877666555554 334444444444444432211 2212244 445544444443 23344333333344444
Q ss_pred HhcC
Q 003136 361 LCSD 364 (845)
Q Consensus 361 ~~g~ 364 (845)
.+|+
T Consensus 221 ~vG~ 224 (249)
T 2qk1_A 221 IFGM 224 (249)
T ss_dssp HHCS
T ss_pred HhCH
Confidence 5554
No 19
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=43.82 E-value=2.3e+02 Score=30.28 Aligned_cols=115 Identities=11% Similarity=0.008 Sum_probs=65.0
Q ss_pred HHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHH
Q 003136 112 QYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLS 191 (845)
Q Consensus 112 ~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~ 191 (845)
+.|.-..+.+..++...+...+..+...+...+.++ . |..-...+.++ ..+..+... . .. ...
T Consensus 343 ~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~--------~---~~~r~aal~~l-~~l~~~~~~--~-~~--~~~ 405 (462)
T 1ibr_B 343 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--------D---WRYRDAAVMAF-GCILEGPEP--S-QL--KPL 405 (462)
T ss_dssp SHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--------S---HHHHHHHHHHH-HHTSSSSCT--T-TT--CTT
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--------C---hHHHHHHHHHH-HHHhcCCcH--H-HH--HHH
Confidence 678888889998888888777777777777766442 2 33333333332 333332110 0 00 000
Q ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhc---CCCchHHHHHHHHHHh
Q 003136 192 LSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKY---YPDAVGGVISKLFELL 246 (845)
Q Consensus 192 l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~---~p~~l~~VL~klf~~l 246 (845)
+...+..+ -.+| +-.+|.++..-..+|..++..+.. .++++.+++..|++.|
T Consensus 406 l~~~~~~l-~~~l--~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 406 VIQAMPTL-IELM--KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp TTTHHHHH-HHGG--GCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHHHHHH-HHHh--cCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHh
Confidence 11112222 2223 445688888888888877776644 3568888888886544
No 20
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=43.11 E-value=1.3e+02 Score=30.26 Aligned_cols=99 Identities=10% Similarity=0.191 Sum_probs=64.4
Q ss_pred CCchHHHHHHHHHHhhhhhhhcCC--CchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhcc---ccc
Q 003136 209 TEPPLVVALGHYLDALGPFLKYYP--DAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSD---KSI 283 (845)
Q Consensus 209 ~dPll~~~~l~~L~~l~~~l~~~p--~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~---~~l 283 (845)
+.+.+.......+.++.....-.. ..+..+++.|++.|.. . + ..+|..++..|.+.+...+ ..+
T Consensus 116 kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~-------k-~---~~vk~~al~~l~~~~~~~~~~~~~l 184 (249)
T 2qk1_A 116 KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKH-------K-T---PQIRMECTQLFNASMKEEKDGYSTL 184 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTC-------S-S---HHHHHHHHHHHHHHHHHCCSCSHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcC-------C-C---hHHHHHHHHHHHHHHHHcCCcchhH
Confidence 335666665566666655432111 2367889999887741 1 1 3789999999999998876 568
Q ss_pred cchH-HHHHHHHHHHHHcCccchhhHHHHHHHHHHHhc
Q 003136 284 LPHM-KDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS 320 (845)
Q Consensus 284 ~p~l-e~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~ 320 (845)
.|++ +.+...+.+++... ...=|..=.|+|..+..
T Consensus 185 ~~~l~~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 185 QRYLKDEVVPIVIQIVNDT--QPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 8898 88888887766554 33334455555665544
No 21
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=42.59 E-value=1.5e+02 Score=37.10 Aligned_cols=119 Identities=9% Similarity=-0.068 Sum_probs=69.3
Q ss_pred CCCCchHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccch
Q 003136 207 KWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPH 286 (845)
Q Consensus 207 ~~~dPll~~~~l~~L~~l~~~l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~ 286 (845)
+-.+|.++...++++..+...... ++...++..+.+.|... . . ..+|+.++..+..++...++.+.||
T Consensus 185 ~~~~~~vR~~a~~al~~l~~~~~~--~~~~~~l~~l~~~L~~~-~-----~----~~~r~~a~~~l~~l~~~~~~~~~~~ 252 (1230)
T 1u6g_C 185 TSPRLAVRKRTIIALGHLVMSCGN--IVFVDLIEHLLSELSKN-D-----S----MSTTRTYIQCIAAISRQAGHRIGEY 252 (1230)
T ss_dssp GCSSHHHHHHHHHHHHHHTTTC------CTTHHHHHHHHHHHT-C-----S----SCSCTTHHHHHHHHHHHSSGGGTTS
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHhccC-C-----c----hhHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345677777766666666554432 23334444444444311 1 0 2467788999999999999999999
Q ss_pred HHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHH
Q 003136 287 MKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQ 340 (845)
Q Consensus 287 le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~~~~~~~q~~~L~~ll~P~~~ 340 (845)
++.+...+-+.+... .+.-|....+++-.++...+.+- ..++..++.++.+
T Consensus 253 l~~l~~~ll~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~-~~~l~~li~~ll~ 303 (1230)
T 1u6g_C 253 LEKIIPLVVKFCNVD--DDELREYCIQAFESFVRRCPKEV-YPHVSTIINICLK 303 (1230)
T ss_dssp CTTHHHHHHHHHSSC--CTTTHHHHHHHHHHHHHCTTCCC-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHChHHH-HHhHHHHHHHHHH
Confidence 999988877666543 23334455566665554332211 2356666665544
No 22
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=41.68 E-value=5.5e+02 Score=31.05 Aligned_cols=40 Identities=8% Similarity=-0.011 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHH
Q 003136 260 SARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQR 299 (845)
Q Consensus 260 ~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~ 299 (845)
..-.+|+++|..|++++..|++.+.||++.+.+.+-+++.
T Consensus 258 ~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~ 297 (960)
T 1wa5_C 258 VLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLT 297 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999777765554
No 23
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=41.50 E-value=1.6e+02 Score=30.37 Aligned_cols=51 Identities=20% Similarity=0.170 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCchHHH-HHHHHHHhhhhhhhcCCCchHHHHHH
Q 003136 190 LSLSRIFEGLLRQLLSLKWTEPPLVV-ALGHYLDALGPFLKYYPDAVGGVISK 241 (845)
Q Consensus 190 ~~l~~~~~~llq~lL~~~~~dPll~~-~~l~~L~~l~~~l~~~p~~l~~VL~k 241 (845)
..+.....++++.||.+ ..+|.+-+ .+..++..|+...|.||.++.+|++-
T Consensus 204 ~~Le~Ea~~lL~~LL~~-~~~~~iss~~l~a~lnsL~~Iak~RP~~~~rIl~a 255 (257)
T 3gs3_A 204 EKLQEEGNNILDILLQF-HGTTHISSVNLIACTSSLCTIAKMRPIFMGAVVEA 255 (257)
T ss_dssp HHHHHHHHHHHHHHHHH-HTCTTCCHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HcCCccchHHHHHHHHHHHHHHHhCcHHHHHHHHh
Confidence 45666677777777765 33453322 35568899999999999999988764
No 24
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=38.68 E-value=32 Score=24.90 Aligned_cols=34 Identities=12% Similarity=-0.087 Sum_probs=30.1
Q ss_pred HHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHh
Q 003136 112 QYRSRLLELVKFVASNKPLVAGVKVSERVMAIIN 145 (845)
Q Consensus 112 ~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~ 145 (845)
+++.-+.+.+|.+.+.+|.+.++|+.++++....
T Consensus 6 ~l~~lL~~~~~~vl~~qP~di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 6 GLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLRE 39 (41)
T ss_dssp THHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh
Confidence 5677889999999999999999999999998754
No 25
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=36.25 E-value=3.2e+02 Score=26.72 Aligned_cols=115 Identities=10% Similarity=0.094 Sum_probs=58.8
Q ss_pred CCchHHHHHHHHHHhhhhhhhc-CCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchH
Q 003136 209 TEPPLVVALGHYLDALGPFLKY-YPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHM 287 (845)
Q Consensus 209 ~dPll~~~~l~~L~~l~~~l~~-~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~l 287 (845)
.++..+..-+.++..|+.-+.. ...++..++..|++.+. ++. ..+|.+|+..|..++...+ +
T Consensus 69 ~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~-------d~~----~~vr~~a~~aL~~~~~~~~------~ 131 (242)
T 2qk2_A 69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFK-------EKK----PNVVTALREAIDAIYASTS------L 131 (242)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG-------CCC----HHHHHHHHHHHHHHHTTSC------H
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHc-------CCC----HHHHHHHHHHHHHHHHcCC------H
Confidence 4566666666666666654432 12344555556655543 222 4789999999999987642 3
Q ss_pred HHHHHHHHHHHHcCccchhhHHHHHHHHHHHhcCCCHH-HHHHHHHHHhHHHHHhh
Q 003136 288 KDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQ-QQQEVLAWLLEPLSQQW 342 (845)
Q Consensus 288 e~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~~~~~~-~q~~~L~~ll~P~~~~W 342 (845)
+.+...+...+..+ +..-|....+++-.+....+.+ .-...+..++..+....
T Consensus 132 ~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l 185 (242)
T 2qk2_A 132 EAQQESIVESLSNK--NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL 185 (242)
T ss_dssp HHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHh
Confidence 34444443333332 3344445555555543322222 12344555555555444
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=32.62 E-value=3.6e+02 Score=26.29 Aligned_cols=60 Identities=12% Similarity=-0.045 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhcCCC
Q 003136 262 RHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAG 323 (845)
Q Consensus 262 ~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~~~~ 323 (845)
.++|..|+..+-.+|+.....+.||.+.+...+-..+.++ ...-|....++|-.+....+
T Consensus 71 ~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~--~~~vr~~a~~aL~~~~~~~~ 130 (242)
T 2qk2_A 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEK--KPNVVTALREAIDAIYASTS 130 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCC
Confidence 3689999999999999887788888888876665544443 34566777888887766444
No 27
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=28.14 E-value=7.1e+02 Score=28.35 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=45.4
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 003136 198 GLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAK 277 (845)
Q Consensus 198 ~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~ 277 (845)
+.|..+| +.+||.++-.. |.++..+...+|+++...+..+|.++. ++ + ..+|+++...|.+|+.
T Consensus 316 ~~L~~~L--~~~d~~vr~~a---L~~L~~i~~~~p~~~~~~~~~i~~~l~-------d~-d---~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 316 NILGRFL--LNNDKNIRYVA---LTSLLKTVQTDHNAVQRHRSTIVDCLK-------DL-D---VSIKRRAMELSFALVN 379 (618)
T ss_dssp HHHHHHH--TCSSTTTHHHH---HHHHHHHHHHHHHHHGGGHHHHHHGGG-------SS-C---HHHHHHHHHHHHHHCC
T ss_pred HHHHHHH--hCCCCchHHHH---HHHHHHHHhhCHHHHHHHHHHHHHHcc-------CC-C---hhHHHHHHHHHHHHcc
Confidence 3444444 45789888774 455566666777777777778888774 11 1 4799999999999988
Q ss_pred h
Q 003136 278 T 278 (845)
Q Consensus 278 ~ 278 (845)
.
T Consensus 380 ~ 380 (618)
T 1w63_A 380 G 380 (618)
T ss_dssp S
T ss_pred c
Confidence 5
No 28
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=26.85 E-value=1.3e+02 Score=34.00 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=59.2
Q ss_pred Hhhhh-hhhcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHc
Q 003136 222 DALGP-FLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQRE 300 (845)
Q Consensus 222 ~~l~~-~l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~ 300 (845)
+.|-+ |++++|++--..++.++.+.. ++. ..+|.+|.-.|-.+|+. -+...++++..||++.
T Consensus 49 aQ~I~kffk~FP~l~~~Ai~a~lDLcE--------Ded---~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqt 111 (507)
T 3u0r_A 49 AQFIPKFFKHFPELADSAINAQLDLCE--------DED---VSIRRQAIKELPQFATG------ENLPRVADILTQLLQT 111 (507)
T ss_dssp HHHHHHHGGGCGGGHHHHHHHHHHHHT--------CSS---HHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHh--------ccc---HHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhc
Confidence 44444 999999999999999988653 122 25899999999999987 4577889999998886
Q ss_pred CccchhhHHHHHHHHHHH
Q 003136 301 GRLLRGEHNLLGEAFLVM 318 (845)
Q Consensus 301 ~~Ls~~E~~~L~EaLl~i 318 (845)
+ ...|..+...+|+-+
T Consensus 112 d--d~~E~~~V~~sL~sl 127 (507)
T 3u0r_A 112 D--DSAEFNLVNNALLSI 127 (507)
T ss_dssp C--CHHHHHHHHHHHHHH
T ss_pred c--chHHHHHHHHHHHHH
Confidence 5 355666666666644
No 29
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=26.83 E-value=5.1e+02 Score=31.72 Aligned_cols=109 Identities=15% Similarity=0.098 Sum_probs=68.1
Q ss_pred HHHHHHHhhhhhhhcCCCc------hHHHHHHHHHHh----cCCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccc
Q 003136 216 ALGHYLDALGPFLKYYPDA------VGGVISKLFELL----TSLPFVFKDPSTNSARHARLQICTSFIRIAKTSDKSILP 285 (845)
Q Consensus 216 ~~l~~L~~l~~~l~~~p~~------l~~VL~klf~~l----~~~p~~~~~~~~~~v~~~Rr~a~s~Lirla~~~~~~l~p 285 (845)
...+.+.+++.+.|-.++. +..++.++.+.+ ..++ .. ..+|-++|..|-|+-......++|
T Consensus 668 ~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~------~~---~~irea~~~~~~r~i~~lg~~~~p 738 (980)
T 3ibv_A 668 SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMG------FN---EDIRGAVRFTSGRIINVVGPDMLP 738 (980)
T ss_dssp HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSC------CS---HHHHHHHHHHHHHHTTTTHHHHTT
T ss_pred HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcC------Cc---HHHHHHHHHHHHHHHHHccHhHHH
Confidence 3346777788877766443 334444444432 2122 12 478889999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHhHHHHH
Q 003136 286 HMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMAS-AAGIQQQQEVLAWLLEPLSQ 340 (845)
Q Consensus 286 ~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~-~~~~~~q~~~L~~ll~P~~~ 340 (845)
++..+.+.+- + .....|..-+..++=-+.. +.+- =.++|..++.|+..
T Consensus 739 ~lp~~i~~ll---~--~~~~~e~~~fL~l~~qli~~f~~~--~~~~l~~ll~~l~~ 787 (980)
T 3ibv_A 739 KVPQLISILL---N--SIDMNELVDVLSFISQLIHIYKDN--MMEITNRMLPTLLM 787 (980)
T ss_dssp THHHHHHHHH---H--HCCTTTHHHHHHHHHHHHHHTTTT--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---h--cCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 9999877664 1 3455665555555544444 4432 34556666666543
No 30
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=26.33 E-value=2.3e+02 Score=33.08 Aligned_cols=190 Identities=9% Similarity=0.021 Sum_probs=109.5
Q ss_pred hhH--HHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCC
Q 003136 108 GDF--SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGAN 185 (845)
Q Consensus 108 ~ef--~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~ 185 (845)
++| .-||+.....+.--..= ..-+ -+.|..+|+.+.. ++....-.-+...+++..+.+.+-..
T Consensus 67 ~~~s~~~~~~~V~~AL~~~~~G---d~~~--Yd~L~~~~~~~~~----~~d~~~~~~L~~~L~aLs~~Vs~Ld~------ 131 (649)
T 3tj1_A 67 EVFSAAMYSRFVKSALDDLDKN---DSTQ--IGIIANQVALPSK----NPERINDKNLNILLDILSSNINRIES------ 131 (649)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTT---CCHH--HHHHHHHHHSCTT----CTTSCCHHHHHHHHHHHHHTGGGGCS------
T ss_pred HHhhHHHHHHHHHHHHHHHhcC---CHHH--HHHHHHHhcCCCc----CcCcCCHHHHHHHHHHHHhhhhhcCc------
Confidence 455 46777666665433221 1122 2566666665532 11212233344456665444444210
Q ss_pred hHHHHHHHHHHHHHHHHHhcc-CC--CCchHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHH
Q 003136 186 SEVQLSLSRIFEGLLRQLLSL-KW--TEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSAR 262 (845)
Q Consensus 186 ~~~~~~l~~~~~~llq~lL~~-~~--~dPll~~~~l~~L~~l~~~l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~ 262 (845)
+.-++|++.+|++ +| .|+..+...++.|.. ++.-.|.++..||.+|...++ |.. . +
T Consensus 132 --------~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~---LvSa~~~yl~~vl~mLV~~F~--~~~-----~---~ 190 (649)
T 3tj1_A 132 --------SRGTFLIQSIINFEKWWELPPHTLSKYIYFIKI---LCSSIPKWWQDVSMILVSCFI--LPI-----K---Q 190 (649)
T ss_dssp --------GGGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHH---HHHHCGGGHHHHHHHHHHGGG--SCH-----H---H
T ss_pred --------hhHHHHHHHHhCCchhccCCHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHhcc--CCC-----c---c
Confidence 0145889999999 87 566666664444443 456778999999999966554 221 0 1
Q ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHhHHHHH
Q 003136 263 HARLQICTSFIRIAKTSDKSILPHMKDIADTMAYLQREGRLLRGEHNLLGEAFLVMASAAGIQQQQEVLAWLLEPLSQ 340 (845)
Q Consensus 263 ~~Rr~a~s~Lirla~~~~~~l~p~le~i~~~v~~L~~~~~Ls~~E~~~L~EaLl~is~~~~~~~q~~~L~~ll~P~~~ 340 (845)
.. ++...|.+|.+..|...--..+.+.+..+ -..-+...++.+..-|+-++..+ ++-+.+.|+-+++-+++
T Consensus 191 ~~--~~H~~L~~Il~lvP~s~~~L~~iL~~~FP----~~~~s~~~~~~Yv~NLLrl~~Y~-PeL~~~Il~LIierlik 261 (649)
T 3tj1_A 191 TV--CHHDMLKYFLRMIPSSMGFIDTYLAKFFP----NKNDTRRKLVNYTSNLLKLRGYC-SELGFQIWSLLIEKIIS 261 (649)
T ss_dssp HH--HHHHHHHHHHHHCGGGHHHHHHHHHHTCC----CTTSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHHHHHHcCCCHHHHHHHHHHhCC----CCCCchhHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHH
Confidence 22 36677888888877654433333343333 23456777788888888887732 26678888888877665
No 31
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=26.10 E-value=67 Score=33.04 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=39.5
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHH---------------hhhhhhhcCCCchHHHHHHHHHHhc
Q 003136 196 FEGLLRQLLSLKWTEPPLVVALGHYLD---------------ALGPFLKYYPDAVGGVISKLFELLT 247 (845)
Q Consensus 196 ~~~llq~lL~~~~~dPll~~~~l~~L~---------------~l~~~l~~~p~~l~~VL~klf~~l~ 247 (845)
.+..+.++..++|+||.+...++.++. .++-+.+++|+++-.|++.++|-+.
T Consensus 21 ~~~vlk~lrKl~W~D~e~~~~l~k~l~~~~~~ky~nI~~lA~ll~~L~~~~~~~~i~vVD~vlE~Ir 87 (248)
T 1uw4_B 21 TEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIR 87 (248)
T ss_dssp HHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhcchhhcccchHHHHHHHHHHHHhhChHHhhhhHHHHHHHHH
Confidence 567788888999999987766666654 2333557789999999999988665
No 32
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=25.83 E-value=3.6e+02 Score=28.65 Aligned_cols=87 Identities=11% Similarity=0.004 Sum_probs=52.4
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcCC-Cch--HHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 003136 198 GLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYP-DAV--GGVISKLFELLTSLPFVFKDPSTNSARHARLQICTSFIR 274 (845)
Q Consensus 198 ~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p-~~l--~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~Lir 274 (845)
..+.++++-+..++.++...+.++..+..++.... ... ..++..+.+.+. ++. .++|+.++..|..
T Consensus 175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~----~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-------CPD----TRVRVAALQNLVK 243 (462)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT-------CSS----HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-------CCC----HHHHHHHHHHHHH
Confidence 33444454322267777777777777666654321 111 112333333221 111 3789999999999
Q ss_pred HHhhccccccchHH-HHHHHHH
Q 003136 275 IAKTSDKSILPHMK-DIADTMA 295 (845)
Q Consensus 275 la~~~~~~l~p~le-~i~~~v~ 295 (845)
++..+++.+.|+++ .+.+.+-
T Consensus 244 l~~~~~~~~~~~~~~~l~~~~~ 265 (462)
T 1ibr_B 244 IMSLYYQYMETYMGPALFAITI 265 (462)
T ss_dssp HHHHCGGGCTTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 7766543
No 33
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=24.32 E-value=73 Score=24.15 Aligned_cols=35 Identities=11% Similarity=-0.081 Sum_probs=31.1
Q ss_pred HHHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHh
Q 003136 111 SQYRSRLLELVKFVASNKPLVAGVKVSERVMAIIN 145 (845)
Q Consensus 111 ~~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~ 145 (845)
.+++.-+.+.+|.+.+.+|.+.++|+.++++....
T Consensus 13 ~~l~~lL~~~~~evlr~qP~Di~~Faa~yF~~l~~ 47 (50)
T 2kyg_A 13 PGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLRE 47 (50)
T ss_dssp TTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999997654
No 34
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=23.12 E-value=8.4e+02 Score=27.46 Aligned_cols=132 Identities=11% Similarity=0.200 Sum_probs=70.5
Q ss_pred HHHhhHHHHHHHHhhcCchHHHHHHHHHHHHHHhhcccCCCCchhhHHHhhHHHHHHHHHHHHhcCCCCCCCCChHHHHH
Q 003136 112 QYRSRLLELVKFVASNKPLVAGVKVSERVMAIINSLLISTMPAQDLAVMESMQSALENVVSAVFDGSNQFGGANSEVQLS 191 (845)
Q Consensus 112 ~yR~~~~~iir~~~~~~P~~a~~~~~~~l~~~l~~~~~~~~~s~~~~~wea~~~~lE~vl~~~~~~~~~~~~~~~~~~~~ 191 (845)
.||+....-|..++...|.. ..|+...+..++... ..++.-|+... +..++...... +. .
T Consensus 368 ~~r~~~v~aI~~la~~~~~~-~~~~v~~Ll~ll~~~-------~~~v~~e~i~~-l~~ii~~~p~~---~~---~----- 427 (591)
T 2vgl_B 368 DFVRKAVRAIGRCAIKVEQS-AERCVSTLLDLIQTK-------VNYVVQEAIVV-IRDIFRKYPNK---YE---S----- 427 (591)
T ss_dssp HHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHTC-------CHHHHHHHHHH-HHHHHHHSCSS---CC---T-----
T ss_pred HHHHHHHHHHHHHHHhChhH-HHHHHHHHHHHHccc-------chHHHHHHHHH-HHHHHHHCcch---HH---H-----
Confidence 57777777777777776643 456666666666553 34445555432 22233322211 10 0
Q ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhhhhhhcCCCchHHHHHHHHHHhcCCCCCCCCCCchHHHHHHHHHHHH
Q 003136 192 LSRIFEGLLRQLLSLKWTEPPLVVALGHYLDALGPFLKYYPDAVGGVISKLFELLTSLPFVFKDPSTNSARHARLQICTS 271 (845)
Q Consensus 192 l~~~~~~llq~lL~~~~~dPll~~~~l~~L~~l~~~l~~~p~~l~~VL~klf~~l~~~p~~~~~~~~~~v~~~Rr~a~s~ 271 (845)
.+..|++.+ . +..+|..+...+-.+.-++.... + .+.+++.+ +..... .+ ..+|..+++.
T Consensus 428 ---~v~~L~~~l-~-~~~~~~~~~~~~wilGey~~~~~---~-~~~~l~~l---~~~~~~-----~~---~~vr~~~l~a 487 (591)
T 2vgl_B 428 ---IIATLCENL-D-SLDEPDARAAMIWIVGEYAERID---N-ADELLESF---LEGFHD-----ES---TQVQLTLLTA 487 (591)
T ss_dssp ---THHHHHHTT-T-TCCSHHHHHHHHHHHHTTCTTCT---T-HHHHHHHH---STTCSS-----SC---HHHHHHHHHH
T ss_pred ---HHHHHHHHH-H-hccCHHHHHHHHHHHHccccccc---C-HHHHHHHH---HHhhcc-----CC---HHHHHHHHHH
Confidence 122333322 1 35678776665544444443332 2 34555555 221111 12 4789999999
Q ss_pred HHHHHhhccccc
Q 003136 272 FIRIAKTSDKSI 283 (845)
Q Consensus 272 Lirla~~~~~~l 283 (845)
+.++....|...
T Consensus 488 ~~Kl~~~~p~~~ 499 (591)
T 2vgl_B 488 IVKLFLKKPSET 499 (591)
T ss_dssp HHHHHTTCCSTT
T ss_pred HHHHHhcCchHH
Confidence 999999988654
Done!