Query 003137
Match_columns 845
No_of_seqs 361 out of 1775
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 17:43:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 4E-220 9E-225 1908.8 78.6 812 30-845 27-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 4E-152 9E-157 1287.6 42.9 629 30-741 17-648 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 6.8E-89 1.5E-93 746.3 19.5 297 39-344 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 2.5E-37 5.4E-42 360.9 13.5 289 33-330 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 2.5E-20 5.4E-25 209.6 14.8 262 54-347 2-373 (374)
6 PF02140 Gal_Lectin: Galactose 99.8 6.4E-20 1.4E-24 162.2 4.9 76 767-844 1-80 (80)
7 KOG4729 Galactoside-binding le 99.8 4.8E-19 1.1E-23 183.3 7.9 86 759-845 40-130 (265)
8 PF02836 Glyco_hydro_2_C: Glyc 99.2 7.9E-10 1.7E-14 120.9 17.6 192 33-265 1-212 (298)
9 PRK10150 beta-D-glucuronidase; 99.0 4.7E-08 1E-12 117.2 24.2 159 31-224 276-448 (604)
10 PF13364 BetaGal_dom4_5: Beta- 98.9 2E-09 4.4E-14 101.3 7.2 68 621-715 33-104 (111)
11 PF00150 Cellulase: Cellulase 98.8 4.8E-08 1E-12 104.4 15.0 159 43-223 4-170 (281)
12 PF13364 BetaGal_dom4_5: Beta- 98.7 4.9E-08 1.1E-12 91.9 9.1 84 463-553 24-110 (111)
13 PRK10340 ebgA cryptic beta-D-g 98.7 2.4E-07 5.2E-12 116.7 17.8 259 32-345 319-602 (1021)
14 PRK09525 lacZ beta-D-galactosi 98.7 3.5E-07 7.5E-12 115.2 18.0 148 32-224 335-488 (1027)
15 COG3250 LacZ Beta-galactosidas 98.5 1.1E-06 2.4E-11 107.2 14.9 135 31-212 284-424 (808)
16 PF02837 Glyco_hydro_2_N: Glyc 98.1 1.1E-05 2.3E-10 80.6 9.8 99 470-574 64-164 (167)
17 smart00633 Glyco_10 Glycosyl h 98.0 2.5E-05 5.4E-10 83.9 9.1 116 85-225 3-125 (254)
18 PLN02705 beta-amylase 98.0 2E-05 4.2E-10 91.3 8.6 81 60-146 266-358 (681)
19 PLN02905 beta-amylase 97.9 3.8E-05 8.2E-10 89.3 9.2 79 62-146 286-376 (702)
20 PLN02801 beta-amylase 97.9 3.9E-05 8.5E-10 87.8 8.9 81 60-146 35-127 (517)
21 PLN00197 beta-amylase; Provisi 97.9 4.1E-05 8.9E-10 88.2 8.9 81 60-146 125-217 (573)
22 PLN02803 beta-amylase 97.8 6.4E-05 1.4E-09 86.4 8.9 80 61-146 106-197 (548)
23 PF03198 Glyco_hydro_72: Gluca 97.8 0.00022 4.8E-09 77.9 12.6 151 31-221 9-179 (314)
24 PLN02161 beta-amylase 97.8 9E-05 2E-09 84.8 9.3 82 61-146 116-207 (531)
25 TIGR03356 BGL beta-galactosida 97.6 0.00015 3.2E-09 83.8 8.9 97 62-170 54-151 (427)
26 PF01373 Glyco_hydro_14: Glyco 97.6 9.2E-05 2E-09 83.4 5.8 114 63-186 17-152 (402)
27 PF13204 DUF4038: Protein of u 97.5 0.0005 1.1E-08 75.4 9.7 224 37-291 2-274 (289)
28 PF00331 Glyco_hydro_10: Glyco 96.7 0.0022 4.8E-08 71.4 5.8 158 49-226 11-179 (320)
29 PF00232 Glyco_hydro_1: Glycos 96.6 0.002 4.4E-08 75.1 5.3 97 62-170 58-156 (455)
30 PRK10150 beta-D-glucuronidase; 96.6 0.011 2.3E-07 71.5 11.4 100 471-576 62-179 (604)
31 COG3693 XynA Beta-1,4-xylanase 96.6 0.015 3.2E-07 63.9 10.8 133 71-226 55-194 (345)
32 PF14488 DUF4434: Domain of un 96.6 0.028 6E-07 56.9 12.1 135 57-222 15-158 (166)
33 COG2730 BglC Endoglucanase [Ca 96.5 0.008 1.7E-07 69.2 8.9 137 38-192 43-193 (407)
34 PF02837 Glyco_hydro_2_N: Glyc 96.4 0.0055 1.2E-07 61.1 5.9 67 621-715 66-136 (167)
35 PRK09852 cryptic 6-phospho-bet 96.3 0.01 2.2E-07 69.6 8.2 96 62-169 71-169 (474)
36 PRK15014 6-phospho-beta-glucos 96.3 0.012 2.5E-07 69.2 8.7 97 62-170 69-168 (477)
37 PRK10340 ebgA cryptic beta-D-g 96.3 0.016 3.4E-07 74.0 10.2 95 473-576 108-206 (1021)
38 PRK09525 lacZ beta-D-galactosi 96.1 0.03 6.5E-07 71.5 11.3 95 473-576 119-218 (1027)
39 PF07745 Glyco_hydro_53: Glyco 96.0 0.018 3.9E-07 64.4 7.9 103 65-191 27-136 (332)
40 PLN02998 beta-glucosidase 96.0 0.0072 1.6E-07 71.1 5.0 100 62-169 82-183 (497)
41 PLN02814 beta-glucosidase 95.8 0.0087 1.9E-07 70.6 4.9 96 62-169 77-174 (504)
42 PRK13511 6-phospho-beta-galact 95.8 0.026 5.7E-07 66.1 8.7 96 62-169 54-150 (469)
43 PRK09593 arb 6-phospho-beta-gl 95.8 0.013 2.8E-07 68.8 5.8 100 62-169 73-175 (478)
44 TIGR01233 lacG 6-phospho-beta- 95.7 0.034 7.3E-07 65.2 8.9 96 62-169 53-149 (467)
45 PRK09589 celA 6-phospho-beta-g 95.6 0.015 3.3E-07 68.2 5.4 100 62-169 67-169 (476)
46 PLN02849 beta-glucosidase 95.6 0.013 2.9E-07 69.0 4.9 96 62-169 79-176 (503)
47 PRK09936 hypothetical protein; 94.8 0.11 2.3E-06 56.7 8.6 58 57-120 33-91 (296)
48 COG3867 Arabinogalactan endo-1 94.4 0.2 4.3E-06 54.5 9.4 111 63-192 64-183 (403)
49 PF14871 GHL6: Hypothetical gl 94.2 0.25 5.4E-06 48.2 8.9 98 66-168 4-123 (132)
50 COG3934 Endo-beta-mannanase [C 94.0 0.036 7.9E-07 63.4 3.1 156 40-213 4-168 (587)
51 COG2723 BglB Beta-glucosidase/ 93.4 0.097 2.1E-06 60.6 5.1 96 62-169 59-157 (460)
52 TIGR01515 branching_enzym alph 92.6 2.1 4.5E-05 52.2 15.2 52 69-121 164-226 (613)
53 KOG2230 Predicted beta-mannosi 91.5 2 4.4E-05 50.5 12.4 150 37-226 327-494 (867)
54 smart00812 Alpha_L_fucos Alpha 90.9 31 0.00066 39.8 21.3 244 55-352 77-337 (384)
55 TIGR00542 hxl6Piso_put hexulos 90.8 3.7 8E-05 44.5 13.3 131 61-219 15-149 (279)
56 PF02638 DUF187: Glycosyl hydr 90.7 1.1 2.3E-05 50.0 9.2 116 60-188 17-162 (311)
57 COG1649 Uncharacterized protei 90.1 3.3 7.2E-05 47.8 12.5 122 60-191 62-210 (418)
58 smart00642 Aamy Alpha-amylase 89.9 0.83 1.8E-05 46.2 6.8 66 63-128 20-97 (166)
59 PRK14706 glycogen branching en 87.9 6.1 0.00013 48.4 13.5 54 68-121 174-237 (639)
60 PRK05402 glycogen branching en 87.7 6.5 0.00014 48.9 13.8 54 68-121 272-335 (726)
61 PF01229 Glyco_hydro_39: Glyco 86.1 2.1 4.5E-05 50.6 8.0 66 51-122 28-105 (486)
62 PRK13210 putative L-xylulose 5 85.7 5.4 0.00012 43.0 10.5 131 62-219 16-149 (284)
63 PRK12568 glycogen branching en 85.4 17 0.00038 45.1 15.5 55 67-123 275-341 (730)
64 PRK09441 cytoplasmic alpha-amy 84.7 1.5 3.3E-05 51.6 6.0 68 54-121 7-101 (479)
65 PF05913 DUF871: Bacterial pro 82.6 1.7 3.6E-05 49.5 4.9 72 50-127 2-73 (357)
66 PRK01060 endonuclease IV; Prov 81.8 23 0.0005 38.2 13.3 93 64-185 14-109 (281)
67 PF00128 Alpha-amylase: Alpha 81.5 1.7 3.6E-05 46.7 4.3 57 65-121 7-72 (316)
68 PLN02447 1,4-alpha-glucan-bran 80.2 3.1 6.6E-05 51.6 6.4 61 62-123 251-322 (758)
69 PRK14705 glycogen branching en 79.8 33 0.00073 45.0 15.6 55 67-121 771-835 (1224)
70 PRK13209 L-xylulose 5-phosphat 79.4 12 0.00025 40.5 10.0 125 63-219 22-154 (283)
71 TIGR01531 glyc_debranch glycog 78.4 7.8 0.00017 50.8 9.3 113 40-158 105-237 (1464)
72 TIGR02402 trehalose_TreZ malto 77.8 4 8.6E-05 49.0 6.3 53 66-121 115-180 (542)
73 cd00019 AP2Ec AP endonuclease 77.7 18 0.00039 39.1 10.8 54 62-119 10-64 (279)
74 PF01261 AP_endonuc_2: Xylose 77.6 9.2 0.0002 38.6 8.1 124 68-219 1-128 (213)
75 PRK09997 hydroxypyruvate isome 75.0 38 0.00083 36.2 12.3 49 54-119 10-58 (258)
76 TIGR02631 xylA_Arthro xylose i 74.1 42 0.00091 38.6 13.0 91 60-169 30-125 (382)
77 PF14683 CBM-like: Polysacchar 73.9 3.5 7.6E-05 41.9 3.8 63 646-719 91-153 (167)
78 PF13200 DUF4015: Putative gly 73.1 11 0.00023 42.3 7.7 112 60-172 11-137 (316)
79 PLN02960 alpha-amylase 72.9 7.2 0.00016 49.0 6.8 57 65-121 420-486 (897)
80 PRK09856 fructoselysine 3-epim 72.8 40 0.00086 36.2 11.9 131 62-219 13-145 (275)
81 COG3623 SgaU Putative L-xylulo 72.2 56 0.0012 35.1 12.1 24 61-84 17-40 (287)
82 PRK10785 maltodextrin glucosid 72.0 6.9 0.00015 47.6 6.3 57 65-121 182-246 (598)
83 COG0296 GlgB 1,4-alpha-glucan 71.5 7.4 0.00016 47.3 6.3 56 61-120 164-233 (628)
84 TIGR03234 OH-pyruv-isom hydrox 71.4 64 0.0014 34.2 13.0 43 63-119 15-57 (254)
85 PRK12313 glycogen branching en 71.4 7.7 0.00017 47.5 6.6 54 68-121 177-240 (633)
86 PRK09989 hypothetical protein; 71.4 38 0.00083 36.2 11.3 43 63-119 16-58 (258)
87 PRK10933 trehalose-6-phosphate 71.3 8.1 0.00018 46.5 6.7 55 64-121 35-101 (551)
88 PF02065 Melibiase: Melibiase; 71.2 33 0.00071 39.7 11.2 89 55-143 51-148 (394)
89 PF14307 Glyco_tran_WbsX: Glyc 71.0 39 0.00085 38.2 11.7 136 60-225 56-197 (345)
90 PF02679 ComA: (2R)-phospho-3- 70.3 7 0.00015 42.1 5.2 52 61-122 83-134 (244)
91 TIGR02104 pulA_typeI pullulana 69.5 8.2 0.00018 47.0 6.3 55 66-121 168-249 (605)
92 PRK09505 malS alpha-amylase; R 69.4 9.1 0.0002 47.2 6.6 58 64-121 232-312 (683)
93 PF06832 BiPBP_C: Penicillin-B 68.0 9.4 0.0002 34.2 4.8 50 497-554 34-84 (89)
94 cd06593 GH31_xylosidase_YicI Y 67.4 9.7 0.00021 42.1 5.8 68 59-126 21-91 (308)
95 TIGR02403 trehalose_treC alpha 67.0 8.9 0.00019 46.1 5.8 57 63-121 28-95 (543)
96 PLN00196 alpha-amylase; Provis 66.7 26 0.00056 41.0 9.3 57 65-121 47-112 (428)
97 TIGR02456 treS_nterm trehalose 65.7 13 0.00028 44.7 6.8 58 62-121 28-96 (539)
98 PRK14582 pgaB outer membrane N 65.0 26 0.00057 43.2 9.2 111 62-190 334-468 (671)
99 PF08531 Bac_rhamnosid_N: Alph 65.0 21 0.00046 36.2 7.3 56 497-553 6-68 (172)
100 PF03659 Glyco_hydro_71: Glyco 63.0 29 0.00063 40.0 8.7 54 59-121 14-67 (386)
101 PF13199 Glyco_hydro_66: Glyco 60.9 15 0.00033 44.3 6.1 79 62-140 118-211 (559)
102 KOG0626 Beta-glucosidase, lact 60.8 17 0.00036 43.2 6.2 113 63-185 92-208 (524)
103 PRK14510 putative bifunctional 60.6 13 0.00028 48.9 6.0 56 66-121 191-267 (1221)
104 PF08308 PEGA: PEGA domain; I 60.3 9.4 0.0002 32.5 3.2 22 498-519 3-24 (71)
105 cd06589 GH31 The enzymes of gl 59.4 1.1E+02 0.0023 33.2 12.0 65 60-125 22-90 (265)
106 cd06592 GH31_glucosidase_KIAA1 59.2 23 0.0005 39.2 6.9 68 57-127 25-96 (303)
107 TIGR03849 arch_ComA phosphosul 58.5 19 0.00042 38.7 5.8 54 60-123 69-122 (237)
108 PF11324 DUF3126: Protein of u 58.4 27 0.00058 30.0 5.4 32 503-534 25-58 (63)
109 PLN02361 alpha-amylase 57.6 23 0.00049 41.1 6.7 57 65-121 32-96 (401)
110 TIGR02100 glgX_debranch glycog 57.6 52 0.0011 40.9 10.1 55 67-121 189-265 (688)
111 cd04908 ACT_Bt0572_1 N-termina 57.5 34 0.00074 28.6 6.1 55 61-119 12-66 (66)
112 COG3589 Uncharacterized conser 57.1 18 0.0004 40.5 5.5 72 50-128 4-76 (360)
113 smart00518 AP2Ec AP endonuclea 56.9 83 0.0018 33.7 10.6 92 64-185 12-104 (273)
114 TIGR02401 trehalose_TreY malto 56.8 23 0.0005 44.6 6.8 64 60-123 14-87 (825)
115 PF01791 DeoC: DeoC/LacD famil 56.1 4.9 0.00011 42.7 0.9 53 65-120 79-131 (236)
116 PF11875 DUF3395: Domain of un 55.7 9.6 0.00021 38.1 2.8 16 829-844 116-133 (151)
117 KOG0496 Beta-galactosidase [Ca 55.4 3.3 7.1E-05 49.8 -0.6 60 768-827 331-390 (649)
118 KOG2024 Beta-Glucuronidase GUS 55.2 19 0.00041 39.1 5.0 59 462-521 73-134 (297)
119 PF10566 Glyco_hydro_97: Glyco 54.9 33 0.00071 37.7 7.0 114 60-181 30-159 (273)
120 TIGR02103 pullul_strch alpha-1 53.2 24 0.00051 45.0 6.3 21 101-121 404-424 (898)
121 PF02055 Glyco_hydro_30: O-Gly 53.0 71 0.0015 38.2 9.9 247 72-346 110-424 (496)
122 PRK14511 maltooligosyl trehalo 52.9 29 0.00063 43.9 6.9 63 60-126 18-94 (879)
123 PF01261 AP_endonuc_2: Xylose 52.2 62 0.0014 32.4 8.3 104 62-193 27-137 (213)
124 PF08531 Bac_rhamnosid_N: Alph 52.0 15 0.00032 37.4 3.5 53 641-715 7-62 (172)
125 PRK14507 putative bifunctional 51.5 29 0.00063 46.9 6.9 60 60-123 756-829 (1693)
126 cd06591 GH31_xylosidase_XylS X 50.8 25 0.00055 39.2 5.5 65 60-125 22-90 (319)
127 PRK03705 glycogen debranching 50.3 26 0.00056 43.2 5.9 55 67-121 184-262 (658)
128 TIGR00677 fadh2_euk methylenet 50.3 52 0.0011 36.3 7.7 108 48-170 130-251 (281)
129 TIGR02102 pullulan_Gpos pullul 49.5 30 0.00066 45.0 6.5 21 101-121 555-575 (1111)
130 PRK12677 xylose isomerase; Pro 48.0 1.7E+02 0.0036 33.8 11.6 90 62-169 31-124 (384)
131 smart00854 PGA_cap Bacterial c 45.9 1.7E+02 0.0036 31.1 10.6 45 65-118 63-107 (239)
132 PF14587 Glyco_hydr_30_2: O-Gl 45.7 1.1E+02 0.0024 35.3 9.5 121 90-225 93-226 (384)
133 PLN02877 alpha-amylase/limit d 45.7 39 0.00084 43.3 6.4 21 101-121 466-486 (970)
134 PRK13398 3-deoxy-7-phosphohept 45.7 73 0.0016 34.9 7.9 82 31-121 14-98 (266)
135 PF01120 Alpha_L_fucos: Alpha- 44.7 5.1E+02 0.011 29.3 18.0 229 67-350 96-342 (346)
136 cd06602 GH31_MGAM_SI_GAA This 44.6 36 0.00077 38.4 5.5 74 54-128 13-93 (339)
137 cd06598 GH31_transferase_CtsZ 44.0 39 0.00085 37.7 5.7 67 60-126 22-95 (317)
138 cd06416 GH25_Lys1-like Lys-1 i 43.9 41 0.00089 34.6 5.4 89 50-141 54-157 (196)
139 cd06603 GH31_GANC_GANAB_alpha 43.5 39 0.00084 38.1 5.5 74 54-128 13-91 (339)
140 PF07691 PA14: PA14 domain; I 43.3 1.1E+02 0.0023 29.2 7.9 70 475-552 47-122 (145)
141 cd06545 GH18_3CO4_chitinase Th 42.6 93 0.002 33.3 8.1 96 92-216 36-132 (253)
142 PF07009 DUF1312: Protein of u 41.9 1.2E+02 0.0027 28.6 7.9 80 648-779 27-107 (113)
143 cd06565 GH20_GcnA-like Glycosy 40.5 1.2E+02 0.0026 33.7 8.7 59 60-121 15-80 (301)
144 KOG3833 Uncharacterized conser 40.3 28 0.00061 38.7 3.6 53 63-121 444-499 (505)
145 PRK10076 pyruvate formate lyas 39.8 1.1E+02 0.0024 32.3 8.0 125 61-219 53-209 (213)
146 cd06599 GH31_glycosidase_Aec37 39.5 58 0.0013 36.3 6.1 66 61-126 28-98 (317)
147 cd06418 GH25_BacA-like BacA is 39.4 1.3E+02 0.0027 31.9 8.3 90 60-171 50-140 (212)
148 COG3915 Uncharacterized protei 39.4 93 0.002 30.7 6.5 47 67-119 39-87 (155)
149 cd06600 GH31_MGAM-like This fa 38.1 51 0.0011 36.8 5.4 72 54-126 13-89 (317)
150 PRK00042 tpiA triosephosphate 37.8 52 0.0011 35.7 5.2 50 67-122 78-127 (250)
151 cd06563 GH20_chitobiase-like T 37.1 1.3E+02 0.0029 34.1 8.7 60 59-121 15-106 (357)
152 cd00311 TIM Triosephosphate is 37.0 68 0.0015 34.6 5.9 50 67-122 76-125 (242)
153 cd06568 GH20_SpHex_like A subg 37.0 63 0.0014 36.4 5.9 62 60-121 16-95 (329)
154 COG1523 PulA Type II secretory 36.7 52 0.0011 40.8 5.5 55 67-121 205-285 (697)
155 cd06595 GH31_xylosidase_XylS-l 36.6 67 0.0015 35.4 6.0 65 60-124 23-97 (292)
156 cd06604 GH31_glucosidase_II_Ma 36.5 60 0.0013 36.5 5.7 73 54-127 13-90 (339)
157 COG1306 Uncharacterized conser 36.1 73 0.0016 35.4 5.8 59 60-121 75-144 (400)
158 PF12876 Cellulase-like: Sugar 36.0 68 0.0015 28.7 4.9 48 176-223 6-62 (88)
159 PLN03059 beta-galactosidase; P 35.9 1.3E+02 0.0028 38.1 8.7 43 621-663 468-517 (840)
160 PF14701 hDGE_amylase: glucano 35.2 1.4E+02 0.0029 35.1 8.2 99 55-159 13-130 (423)
161 PRK08673 3-deoxy-7-phosphohept 35.2 1E+02 0.0022 35.0 7.1 82 31-121 80-164 (335)
162 KOG4729 Galactoside-binding le 34.9 55 0.0012 35.6 4.6 80 764-845 144-231 (265)
163 COG0366 AmyA Glycosidases [Car 33.9 73 0.0016 37.0 6.1 55 66-120 33-96 (505)
164 cd06564 GH20_DspB_LnbB-like Gl 33.5 1.1E+02 0.0025 34.1 7.3 58 60-120 15-101 (326)
165 cd02742 GH20_hexosaminidase Be 33.3 75 0.0016 35.2 5.7 60 59-121 13-92 (303)
166 PF01055 Glyco_hydro_31: Glyco 32.9 83 0.0018 36.5 6.2 69 60-129 41-111 (441)
167 TIGR02455 TreS_stutzeri trehal 32.9 1E+02 0.0022 38.0 6.9 75 60-138 76-175 (688)
168 PRK14566 triosephosphate isome 32.5 1.2E+02 0.0026 33.2 6.8 75 42-122 62-136 (260)
169 cd06601 GH31_lyase_GLase GLase 32.3 86 0.0019 35.4 6.0 72 54-126 13-89 (332)
170 TIGR00433 bioB biotin syntheta 31.6 72 0.0016 34.8 5.2 52 65-119 123-176 (296)
171 PRK09267 flavodoxin FldA; Vali 31.5 2.5E+02 0.0054 27.9 8.7 74 42-118 44-117 (169)
172 PRK09875 putative hydrolase; P 31.3 2.2E+02 0.0047 31.7 8.8 89 32-140 7-95 (292)
173 TIGR00419 tim triosephosphate 30.9 97 0.0021 32.7 5.7 45 67-121 73-117 (205)
174 PRK09856 fructoselysine 3-epim 30.6 66 0.0014 34.5 4.6 56 62-121 90-149 (275)
175 cd06597 GH31_transferase_CtsY 30.3 92 0.002 35.2 5.9 73 54-126 13-110 (340)
176 PLN02784 alpha-amylase 30.3 1E+02 0.0022 39.2 6.5 57 65-121 524-588 (894)
177 KOG0259 Tyrosine aminotransfer 29.3 73 0.0016 36.6 4.6 67 50-120 170-238 (447)
178 TIGR00676 fadh2 5,10-methylene 29.2 1.9E+02 0.0041 31.5 7.9 108 47-169 125-246 (272)
179 cd07381 MPP_CapA CapA and rela 29.2 5.5E+02 0.012 27.0 11.3 45 65-118 67-111 (239)
180 cd06562 GH20_HexA_HexB-like Be 29.2 2.3E+02 0.005 32.1 8.8 62 59-120 15-89 (348)
181 KOG0622 Ornithine decarboxylas 29.1 79 0.0017 36.7 4.9 68 59-136 190-258 (448)
182 PRK13209 L-xylulose 5-phosphat 28.5 2.5E+02 0.0054 30.2 8.7 103 59-191 54-161 (283)
183 PRK12858 tagatose 1,6-diphosph 28.0 74 0.0016 36.1 4.6 65 54-121 99-163 (340)
184 smart00481 POLIIIAc DNA polyme 27.9 1.8E+02 0.0039 24.2 5.9 44 63-119 16-59 (67)
185 PF02228 Gag_p19: Major core p 27.8 27 0.00058 31.1 0.7 37 60-113 20-56 (92)
186 PRK10426 alpha-glucosidase; Pr 27.7 3.4E+02 0.0073 33.6 10.4 64 63-126 222-294 (635)
187 PF08924 DUF1906: Domain of un 27.6 1.6E+02 0.0035 28.9 6.3 89 60-170 36-127 (136)
188 PF00728 Glyco_hydro_20: Glyco 27.2 84 0.0018 35.0 4.9 58 60-120 16-92 (351)
189 COG2884 FtsE Predicted ATPase 26.9 53 0.0011 34.6 2.9 16 648-663 55-70 (223)
190 PRK13210 putative L-xylulose 5 26.8 92 0.002 33.4 4.9 59 62-121 94-153 (284)
191 PLN02561 triosephosphate isome 26.8 1.3E+02 0.0027 32.9 5.8 50 67-122 80-129 (253)
192 PRK15492 triosephosphate isome 26.5 1.3E+02 0.0028 32.9 5.9 50 67-122 86-135 (260)
193 COG1891 Uncharacterized protei 26.0 24 0.00053 36.1 0.2 67 48-120 117-186 (235)
194 cd01299 Met_dep_hydrolase_A Me 26.0 1.3E+02 0.0028 33.3 6.0 60 60-120 118-179 (342)
195 cd06570 GH20_chitobiase-like_1 25.9 1.3E+02 0.0028 33.7 5.9 60 59-121 15-88 (311)
196 PTZ00333 triosephosphate isome 25.8 1.4E+02 0.003 32.6 5.9 49 68-122 82-130 (255)
197 PLN02429 triosephosphate isome 25.4 1.1E+02 0.0024 34.4 5.2 46 67-122 139-188 (315)
198 PRK14565 triosephosphate isome 25.3 1.1E+02 0.0025 32.9 5.2 50 67-122 77-126 (237)
199 PRK12331 oxaloacetate decarbox 25.1 1.4E+02 0.0031 35.2 6.3 55 54-120 88-142 (448)
200 COG5309 Exo-beta-1,3-glucanase 24.8 4.4E+02 0.0096 29.2 9.3 119 60-226 61-179 (305)
201 PRK09997 hydroxypyruvate isome 24.3 1E+02 0.0022 32.9 4.7 60 62-121 85-144 (258)
202 PRK14567 triosephosphate isome 23.6 1.6E+02 0.0035 32.1 5.9 49 68-122 78-126 (253)
203 cd04882 ACT_Bt0572_2 C-termina 23.2 1.5E+02 0.0033 23.9 4.6 55 61-117 10-64 (65)
204 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.1 1.9E+02 0.004 31.7 6.4 49 59-119 88-136 (275)
205 KOG3625 Alpha amylase [Carbohy 22.8 73 0.0016 40.3 3.4 76 60-144 140-235 (1521)
206 PF04914 DltD_C: DltD C-termin 22.4 68 0.0015 31.4 2.6 53 101-171 36-88 (130)
207 PTZ00372 endonuclease 4-like p 22.1 4.4E+02 0.0096 30.9 9.4 84 38-122 149-240 (413)
208 smart00758 PA14 domain in bact 21.7 2.9E+02 0.0064 26.1 6.9 64 475-547 45-109 (136)
209 PLN02389 biotin synthase 21.5 1.2E+02 0.0026 34.9 4.7 52 64-118 177-230 (379)
210 TIGR01698 PUNP purine nucleoti 21.1 1.3E+02 0.0028 32.5 4.5 41 41-81 47-88 (237)
211 PRK08645 bifunctional homocyst 21.0 2.8E+02 0.006 34.1 8.0 110 44-169 460-578 (612)
212 PRK11372 lysozyme inhibitor; P 20.9 1.9E+02 0.0041 27.5 5.1 19 7-25 1-19 (109)
213 KOG0805 Carbon-nitrogen hydrol 20.9 2.6E+02 0.0056 30.5 6.5 52 102-161 38-89 (337)
214 cd06569 GH20_Sm-chitobiase-lik 20.9 1.8E+02 0.0039 34.3 6.1 71 37-120 7-116 (445)
215 COG0149 TpiA Triosephosphate i 20.8 2E+02 0.0042 31.4 5.8 72 44-122 58-129 (251)
216 PF14307 Glyco_tran_WbsX: Glyc 20.5 1.4E+02 0.003 33.8 5.0 43 36-81 150-194 (345)
217 COG1735 Php Predicted metal-de 20.5 4.3E+02 0.0093 29.7 8.4 153 30-225 15-172 (316)
218 PRK10658 putative alpha-glucos 20.2 2.1E+02 0.0045 35.6 6.7 65 61-126 282-350 (665)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=4.3e-220 Score=1908.81 Aligned_cols=812 Identities=75% Similarity=1.360 Sum_probs=756.5
Q ss_pred ceeEEEccCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHH
Q 003137 30 EGSVSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKL 109 (845)
Q Consensus 30 ~~~v~~d~~~~~idG~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~ 109 (845)
..+|++|+++|+|||+|++|+||+|||||+||++|+|+|+||||+|||||+||||||+|||+||+|||+|++||++||++
T Consensus 27 ~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~l 106 (840)
T PLN03059 27 SASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKV 106 (840)
T ss_pred eeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEecCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccc
Q 003137 110 AKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENE 189 (845)
Q Consensus 110 a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 189 (845)
|+|+||+|||||||||||||++||||.||+++|+|++|++||+|+++|++|+++|+++++++++++++||||||+|||||
T Consensus 107 a~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENE 186 (840)
T PLN03059 107 VQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENE 186 (840)
T ss_pred HHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred ccCcccccCCCCHHHHHHHHHHHHhcCCCcceeecCCCCCCCccccCCCCcccccCCCCCCCCCceeeecccccccccCC
Q 003137 190 YGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQDDAPDPLINTCNGFYCDYFSPNKAYKPKMWTEAWTGWYTEFGG 269 (845)
Q Consensus 190 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~~~~~~~~p~~P~~~~E~~~GWf~~WG~ 269 (845)
||++...|+.+|++||+||++|++++|++|||+||++.+++++++++|||.+|+.|.+.++.+|+|+||||+|||++||+
T Consensus 187 YGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~wG~ 266 (840)
T PLN03059 187 YGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGG 266 (840)
T ss_pred ccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhhcCC
Confidence 99987667778999999999999999999999999998888899999999889999888888999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhCCeeeeeeeeecCCCCCCCCCCCCccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHhhc
Q 003137 270 PVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCE 349 (845)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~~~~~~ 349 (845)
+++.|+++|++.++++||++|+|++|||||||||||||||||++++|||||||||+|+|++++|||.+||++|++++.++
T Consensus 267 ~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~~ 346 (840)
T PLN03059 267 AVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCE 346 (840)
T ss_pred CCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999889999999999999999999999999999999999996679999999999999998
Q ss_pred CCccCCCCccccCCCccceeeeecCcceeeeeccccccceeEEEeCCccccCCCcceeecCCCCccccccceeccccccc
Q 003137 350 PALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQSTQM 429 (845)
Q Consensus 350 ~~l~~~~p~~~~~g~~~~~~~y~~~~~~~~fl~n~~~~~~~~v~f~~~~~~~p~~~v~i~~~~~~~~~~t~~v~~~~~~~ 429 (845)
++|+..+|....+|+.+++.+|...+.|++|+.|++.+...+|+|+|++|.||+|||+|||||+.++|+|+++++|++.+
T Consensus 347 ~~l~~~~p~~~~lg~~~ea~~y~~~~~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~~~ 426 (840)
T PLN03059 347 PALVSVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQM 426 (840)
T ss_pred ccccCCCCceeccCCceeEEEccCccchhhheeccCCCCceeEEECCcccccCccceeecccccceeeecccccccccee
Confidence 88887778778899999999998555899999999988899999999999999999999999999999999999998776
Q ss_pred ccccCCCCCCCCcccccCC-CccCCCCCccccchhhhhcCCCCCCceEEEEEEecCCCCcccccCCCcceEEecCcCeEE
Q 003137 430 KMTPVPIHGGFSWQAFNEV-PSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHAL 508 (845)
Q Consensus 430 ~~~~~~~~~~~~w~~~~e~-~~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Yrt~~~~~~~~~~~~~~~~~~L~i~~~~D~a 508 (845)
++.+. ...+.|+++.|+ .+...+.++++..++||+++|+|.+||+||||+|....++...|++.+++|+|.+++|++
T Consensus 427 ~~~~~--~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~ 504 (840)
T PLN03059 427 KMNPV--GSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHAL 504 (840)
T ss_pred ecccc--cccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEcccCcEE
Confidence 55432 256699999999 444456789999999999999999999999999988766544567778999999999999
Q ss_pred EEEECCEEEEEEecccCCCeeEEEeeeeccCCCcEEEEEEeccCCccccCCCCcccccccccEEEccccCCcccCccCCc
Q 003137 509 HVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQKW 588 (845)
Q Consensus 509 ~VfvNg~~vGs~~~~~~~~~~~~~~~~~l~~g~n~L~ILven~GrvNyG~~~~~~~kGI~g~V~l~g~~~~~~~L~~~~W 588 (845)
||||||+++|+++++.....++++.+++++.|.|+|+||||||||+|||++|+++.|||+|+|+|+|.+.++.+|+++.|
T Consensus 505 ~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~~~W 584 (840)
T PLN03059 505 HVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKW 584 (840)
T ss_pred EEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceecccCcc
Confidence 99999999999998776667888878888889999999999999999999999999999999999998888889998899
Q ss_pred EEEcCCCccccccccCCCCCCCccccCCcccCCCCceEEEEEEECCCCCCCeEEEeCCCceEEEEECCeeccccccccc-
Q 003137 589 TYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAYK- 667 (845)
Q Consensus 589 ~~~~~L~gE~~~~~~~~~~~~~~W~~~~~~~~~~~~~fYr~tF~lp~~~dp~~Ld~~g~gKG~vwVNG~nlGRYW~~~~- 667 (845)
.|+++|.||.++++.+++...+.|...+..+...+++|||++|++|.+.|||||||++||||+|||||+||||||+.+.
T Consensus 585 ~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a~ 664 (840)
T PLN03059 585 SYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPAYTA 664 (840)
T ss_pred ccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCcccccccccccc
Confidence 9999999999999887656678897764434456799999999999999999999999999999999999999998632
Q ss_pred cCCCCCcccccCccccccccCCCCCCceeEEecCCCccccCCcEEEEEEecCCCCCceEEeeechhhhhhhhhccCCccc
Q 003137 668 ASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYEWQPTLI 747 (845)
Q Consensus 668 ~~G~~~~c~~iG~~~~~~~~t~cg~PQqtlY~VP~~~Lk~g~N~IvvfE~~g~~p~~i~l~~~~~~~ic~~~~e~~~~~~ 747 (845)
..|| +.|||+|+|+++||+||||+|||+|||||++|||+|+|+||||||+|++|..|+|+++.+++||++++|+| |+|
T Consensus 665 ~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~~~~c~~~~e~~-p~~ 742 (840)
T PLN03059 665 HGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTTDSVCADIFEGQ-PAL 742 (840)
T ss_pred cCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEeecCcccccccccC-Ccc
Confidence 3577 88999999999999999999999999999999999999999999999999999999999999999999999 569
Q ss_pred ccccccCCCccCCCCCceeEecCCCCeEEEEeeeccCCCCCCCCCccCCceecCChHHHHHhhcCCCCceEEEecCCCCC
Q 003137 748 NWQLHASGKVNKPLRPKAHLMCGPGQKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFG 827 (845)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~L~C~~g~~I~~I~~A~yGr~~~~C~~~~~~~C~~~~s~~~v~~~C~Gk~~C~v~as~~~Fg 827 (845)
++|.+.+....+...+.++|+||.|++|+.|.||+||||.++|+++++++|++++|+++|+++|+||++|+|.|++.+||
T Consensus 743 ~~w~~~~~~~~~~~~~~~~L~C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~vV~kaC~Gk~~CsV~asn~~Fg 822 (840)
T PLN03059 743 KNWQIIASGKVNSLQPKAHLWCPPGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDAFERNCIGKQSCSVTVAPEVFG 822 (840)
T ss_pred ccccccccccccccCCcEEEECCCCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHHHHHHHCCCCCceEEEeccceec
Confidence 99999444333467889999999999998899999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCceeEEEEEEeC
Q 003137 828 GDPCPSIMKQLAVEAICG 845 (845)
Q Consensus 828 ~DPC~gt~KyL~v~y~C~ 845 (845)
+|||+||+|||+|+|.|+
T Consensus 823 gDPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 823 GDPCPDSMKKLSVEAVCS 840 (840)
T ss_pred CCCCCCceeEEEEEEEeC
Confidence 799999999999999996
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-152 Score=1287.56 Aligned_cols=629 Identities=65% Similarity=1.154 Sum_probs=579.3
Q ss_pred ceeEEEccCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHH
Q 003137 30 EGSVSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKL 109 (845)
Q Consensus 30 ~~~v~~d~~~~~idG~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~ 109 (845)
++.|++|+++|++||+|++++||+|||||++|++|+|+|+|||++|+|+|+||||||.|||+||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCEEEEecCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccc
Q 003137 110 AKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENE 189 (845)
Q Consensus 110 a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 189 (845)
|++.||+|+||+||||||||++||+|.||..+|++.+||+|++|+++|++|+++|++++| +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccCcccccCCCCHHHHHHHHHHHHhcCCCcceeecCCCCCCCccccCCCCccc-ccCC-CCCCCCCceeeeccccccccc
Q 003137 190 YGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQDDAPDPLINTCNGFYC-DYFS-PNKAYKPKMWTEAWTGWYTEF 267 (845)
Q Consensus 190 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~ng~~~-~~~~-~~~p~~P~~~~E~~~GWf~~W 267 (845)
||.+...|++..++|++|-..|+...+.+|||+||.+.++|++++++|||.+| +.|. +++|++|+||||||+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99887778888999999999999999999999999999999999999999999 8888 999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeecCCCCCCCCCCCCccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHh
Q 003137 268 GGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKL 347 (845)
Q Consensus 268 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~~~~ 347 (845)
|++++.|++++++..+++|+++|+|++||||||||||||++|| ++.+|||||||||| |..++|||.|+|.+|..++.
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~ 331 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDY 331 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhh
Confidence 9999999999999999999999999999999999999999998 99999999999999 99999999999999999999
Q ss_pred hcCCccCCCCccccCCCccceeeeecCcceeeeeccccccceeEEEeCCccccCCCcceeecCCCCccccccceeccccc
Q 003137 348 CEPALVSGNPTVMPLGNYQEAHVFKSKSACAAFLANYNQRTFAKVAFGNQHYNLPPWSISILPDCKNTVYNTARVGHQST 427 (845)
Q Consensus 348 ~~~~l~~~~p~~~~~g~~~~~~~y~~~~~~~~fl~n~~~~~~~~v~f~~~~~~~p~~~v~i~~~~~~~~~~t~~v~~~~~ 427 (845)
+++.+..+++....+|+.+ +.|+.|+.|++..+...+.|++..+.+|+|+++|++||++++|+|+++..+
T Consensus 332 ~ep~lv~gd~~~~kyg~~~--------~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~-- 401 (649)
T KOG0496|consen 332 CEPALVAGDITTAKYGNLR--------EACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ-- 401 (649)
T ss_pred cCccccccCcccccccchh--------hHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc--
Confidence 9998877765543433322 269999999998888899999999999999999999999999999976533
Q ss_pred ccccccCCCCCCCCcccccCCCccCCCCCccccchhhhhcCCCCCCceEEEEEEecCCCCcccccCCCcceEEec-CcCe
Q 003137 428 QMKMTPVPIHGGFSWQAFNEVPSAYGDSSFTMSGLLEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVM-SAGH 506 (845)
Q Consensus 428 ~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Yrt~~~~~~~~~~~~~~~~~~L~i~-~~~D 506 (845)
|....|+++ +|..+| .+||++|++.++.+.+++ +.|+|. +++|
T Consensus 402 --------------~~~~~e~~~------------~~~~~~---~~~~ll~~~~~t~d~sd~-------t~~~i~ls~g~ 445 (649)
T KOG0496|consen 402 --------------WISFTEPIP------------SEAVGQ---SFGGLLEQTNLTKDKSDT-------TSLKIPLSLGH 445 (649)
T ss_pred --------------cccccCCCc------------cccccC---cceEEEEEEeeccccCCC-------ceEeecccccc
Confidence 545556643 477766 789999999998766552 568888 9999
Q ss_pred EEEEEECCEEEEEEecccCCCeeEEEeeeeccCCCcEEEEEEeccCCccccCCCCcccccccccEEEccccCCcccCccC
Q 003137 507 ALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVGLPNVGPHFETWNAGVLGPVTLNGLNEGRRDLSWQ 586 (845)
Q Consensus 507 ~a~VfvNg~~vGs~~~~~~~~~~~~~~~~~l~~g~n~L~ILven~GrvNyG~~~~~~~kGI~g~V~l~g~~~~~~~L~~~ 586 (845)
++||||||+++|+++++.....+.+..++.|..|.|+|+|||||+||+||| +++++.|||+|+|+|+|. ++++++
T Consensus 446 ~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~ 520 (649)
T KOG0496|consen 446 ALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWT 520 (649)
T ss_pred eEEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----ecccee
Confidence 999999999999999987666777888888999999999999999999999 889999999999999997 577777
Q ss_pred CcEEEcCCCccccccccCCCCCCCccccCCcccCCCCceEEEEEEECCCCCCCeEEEeCCCceEEEEECCeecccccccc
Q 003137 587 KWTYKIGLEGEKLNLHSLSGGSSVEWAEGSLVAQRQPLTWYRTTFSAPAGNAPLALDMGSMGKGQVWVNGQSIGRHWPAY 666 (845)
Q Consensus 587 ~W~~~~~L~gE~~~~~~~~~~~~~~W~~~~~~~~~~~~~fYr~tF~lp~~~dp~~Ld~~g~gKG~vwVNG~nlGRYW~~~ 666 (845)
.|.|+++|.||.+..+.+++...++|......+..++.+||+ +|++|.+.+||+|||.|||||+|||||+|||||||++
T Consensus 521 ~w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~~ 599 (649)
T KOG0496|consen 521 KWPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPSF 599 (649)
T ss_pred ecceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccCCC
Confidence 889999999999999999888889998876444446788998 9999999989999999999999999999999999874
Q ss_pred ccCCCCCcccccCccccccccCCCCCCceeEEecCCCccccCCcEEEEEEecCCCCCceEEeeechhhhhhhhhc
Q 003137 667 KASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISLVRREIDSVCAYMYE 741 (845)
Q Consensus 667 ~~~G~~~~c~~iG~~~~~~~~t~cg~PQqtlY~VP~~~Lk~g~N~IvvfE~~g~~p~~i~l~~~~~~~ic~~~~e 741 (845)
| ||+++ |||++|||++.|+||||||++++|..|+|+++++..+|+.+.|
T Consensus 600 ------------G-------------~Q~~y-hvPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~~~~~~v~~ 648 (649)
T KOG0496|consen 600 ------------G-------------PQRTY-HVPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVLSTCAYVRE 648 (649)
T ss_pred ------------C-------------CceEE-ECcHHHhCcCCceEEEEEeccCCCccceEEEeEeeeEeeeccc
Confidence 5 97665 5999999999999999999999999999999999999998866
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=6.8e-89 Score=746.28 Aligned_cols=297 Identities=43% Similarity=0.825 Sum_probs=230.4
Q ss_pred cEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 003137 39 AIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (845)
Q Consensus 39 ~~~idG~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi 118 (845)
+|+|||||++|+|||+||||+|+++|+|+|+||||+|+|||+||||||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccCcccccC
Q 003137 119 LRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIG 198 (845)
Q Consensus 119 lrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 198 (845)
|||||||||||++||+|.||++++++++|++|+.|++++++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999953
Q ss_pred CCCHHHHHHHHHHHHhcCCC-cceeecCCC--------CCCCccccCCCCccccc-----C---CCCCCCCCceeeeccc
Q 003137 199 APGRSYTRWAAKMAVGLGTG-VPWIMCKQD--------DAPDPLINTCNGFYCDY-----F---SPNKAYKPKMWTEAWT 261 (845)
Q Consensus 199 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~--------~~~~~~~~~~ng~~~~~-----~---~~~~p~~P~~~~E~~~ 261 (845)
.++++||+.|++++++.|++ +++++++.. +.++..+.+++++.+.+ | ...+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 38999999999999999998 667777642 12222233344444421 1 2456889999999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeecCCCCCCCCCCCCc----cccCCCCCCCCcCCCCCchhHHH
Q 003137 262 GWYTEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFI----ATSYDYDAPLDEYGLLRQPKWGH 337 (845)
Q Consensus 262 GWf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~----~TSYDYdApl~E~G~~~t~Ky~~ 337 (845)
|||++||++++.+++++++..+++++++|.+ +||||||||||||+++|++.. +|||||+|||+|+|++ +|||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999966 799999999999999987654 5999999999999999 599999
Q ss_pred HHHHHHH
Q 003137 338 LKDLHRA 344 (845)
Q Consensus 338 lr~l~~~ 344 (845)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999874
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-37 Score=360.86 Aligned_cols=289 Identities=24% Similarity=0.316 Sum_probs=215.2
Q ss_pred EEEccCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEE-ccccCccCCCCceeeeccchhHHHHHHHHH
Q 003137 33 VSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYYFEGNYDLVKFIKLAK 111 (845)
Q Consensus 33 v~~d~~~~~idG~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~-yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~ 111 (845)
|.++...+++||+|++++||++||+|+|++.|.|||+|||++|+|+|++ |+.||.|||++|+|||+ .+|+. ||++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567889999999999999999999999999999999999999999999 99999999999999999 78888 999999
Q ss_pred HcCCEEEEecCc-eeceecCCCCCCcccccCCCeeee---------cCChhhHHHHHHHHHHHHHHHHhcccccccCCce
Q 003137 112 QAGLYVNLRIGP-YVCAEWNFGGFPVWLKYIPGINFR---------TENGPFKAEMHKFTKKIVDMMKAERLFESQGGPI 181 (845)
Q Consensus 112 ~~GL~VilrpGP-yicaEw~~GG~P~WL~~~p~~~~R---------~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 181 (845)
+.||+||||||| ..|.+|..+++|.||..++.-..| .+++.|++++++ |+++|+ +.++++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~ir--er~~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDR----ILQQIR--ERLYGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHH----HHHHHH--HHHhccCCce
Confidence 999999999999 999999999999999886653333 345678887777 555555 3335889999
Q ss_pred EEecccccccCcccccCCCCHHHHHHHHHHHHhc-CCCcceeecCCC-CCC-CccccCCC-----Cccc--ccCCCCCCC
Q 003137 182 ILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGL-GTGVPWIMCKQD-DAP-DPLINTCN-----GFYC--DYFSPNKAY 251 (845)
Q Consensus 182 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~~~-~~~-~~~~~~~n-----g~~~--~~~~~~~p~ 251 (845)
|+||++||||++.+.++.|.+.+..||++.+-.. -++-+|=+.-.+ +.. -..|.+.+ .... -+|......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999964445568889999999877211 112222111100 000 00111111 0000 022222222
Q ss_pred C----Cceeeecccccc-cccCCCCCCCC-hHHHHHHHHHHHHhCCeeeeeeeeecCCCCC------CCCCCC---C---
Q 003137 252 K----PKMWTEAWTGWY-TEFGGPVPHRP-VEDLAFSVAKFIQKGGSFINYYMYHGGTNFG------RTAGGP---F--- 313 (845)
Q Consensus 252 ~----P~~~~E~~~GWf-~~WG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~Ga~---~--- 313 (845)
+ +....|.+-+|| +.|..++-... .+.-++.+.+.+..+.+ -||||||+|++|+ +.+|+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 566778888999 77776654444 33345667777777666 6999999999999 777654 2
Q ss_pred ----ccccCCCCCCCCcCCCC
Q 003137 314 ----IATSYDYDAPLDEYGLL 330 (845)
Q Consensus 314 ----~~TSYDYdApl~E~G~~ 330 (845)
..|+|++++.+.+.|.+
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred cCCcchhhhhhccCCCCCccc
Confidence 47999999999999985
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.83 E-value=2.5e-20 Score=209.61 Aligned_cols=262 Identities=21% Similarity=0.257 Sum_probs=159.9
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEE-ccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCC
Q 003137 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFG 132 (845)
Q Consensus 54 ~Hy~r~~~~~W~~~l~k~ka~GlN~V~~-yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~G 132 (845)
+++..++++.|+++|++||++|+|+|++ .+.|+.+||+||+|||+ .||++|++|+++||+|||+.. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4667889999999999999999999996 67899999999999999 799999999999999999974 57
Q ss_pred CCCccccc-CCCeee----------------ecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccCccc
Q 003137 133 GFPVWLKY-IPGINF----------------RTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEY 195 (845)
Q Consensus 133 G~P~WL~~-~p~~~~----------------R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~ 195 (845)
..|.||.+ .|++.. ..++|.|++++++++++|+++++++| .||+|||+||++...
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p-------~vi~~~i~NE~~~~~- 142 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHP-------AVIGWQIDNEPGYHR- 142 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTT-------TEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccc-------eEEEEEeccccCcCc-
Confidence 79999975 576532 13468899999999999999988554 799999999998742
Q ss_pred ccC-CCCHHHHHHHHHHHHhc-------CC-------------CcceeecCCC---------------------------
Q 003137 196 EIG-APGRSYTRWAAKMAVGL-------GT-------------GVPWIMCKQD--------------------------- 227 (845)
Q Consensus 196 ~~~-~~~~~y~~~l~~~~~~~-------g~-------------~vp~~~~~~~--------------------------- 227 (845)
+|. .+.++|.+||++.+... |. ..|..+....
T Consensus 143 ~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~i 222 (374)
T PF02449_consen 143 CYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADII 222 (374)
T ss_dssp --SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233 36788999999988421 11 1122211000
Q ss_pred --CCCCccccCCC--Cc--cc-c--------cC-------------C---------------CCCCCCCceeeecccccc
Q 003137 228 --DAPDPLINTCN--GF--YC-D--------YF-------------S---------------PNKAYKPKMWTEAWTGWY 264 (845)
Q Consensus 228 --~~~~~~~~~~n--g~--~~-~--------~~-------------~---------------~~~p~~P~~~~E~~~GWf 264 (845)
..|+ ...+.| +. .. + ++ . .....+|.+++|..+| -
T Consensus 223 r~~~p~-~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~ 300 (374)
T PF02449_consen 223 REYDPD-HPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-P 300 (374)
T ss_dssp HHHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S--
T ss_pred HHhCCC-ceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-C
Confidence 0011 000101 00 00 0 00 0 1136889999999999 5
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeecCCCCCCCCCCCCccccCCCCCCCCcCC-CCCchhHHHHHHHHH
Q 003137 265 TEFGGPVPHRPVEDLAFSVAKFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYG-LLRQPKWGHLKDLHR 343 (845)
Q Consensus 265 ~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E~G-~~~t~Ky~~lr~l~~ 343 (845)
..|+.......+..+....-.-++.|+..+.|+=+ ...-+|.-.. ..+.|+-+| .+ +++|.+++++.+
T Consensus 301 ~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~---------~~g~~~~dg~~~-~~~~~e~~~~~~ 369 (374)
T PF02449_consen 301 VNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF---------HGGLVDHDGREP-TRRYREVAQLGR 369 (374)
T ss_dssp -SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT---------S--SB-TTS--B--HHHHHHHHHHH
T ss_pred CCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh---------hcccCCccCCCC-CcHHHHHHHHHH
Confidence 66766555555566655555668899998777644 3333342211 136788999 65 799999999988
Q ss_pred HHHh
Q 003137 344 AIKL 347 (845)
Q Consensus 344 ~~~~ 347 (845)
.|+.
T Consensus 370 ~l~~ 373 (374)
T PF02449_consen 370 ELKK 373 (374)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 7764
No 6
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.79 E-value=6.4e-20 Score=162.15 Aligned_cols=76 Identities=36% Similarity=0.726 Sum_probs=60.8
Q ss_pred EecCCCCeEEEEeeeccCCCC-CCCCCc---cCCceecCChHHHHHhhcCCCCceEEEecCCCCCCCCCCCCceeEEEEE
Q 003137 767 LMCGPGQKIKSIKFASFGTPE-GVCGSY---RQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPSIMKQLAVEA 842 (845)
Q Consensus 767 L~C~~g~~I~~I~~A~yGr~~-~~C~~~---~~~~C~~~~s~~~v~~~C~Gk~~C~v~as~~~Fg~DPC~gt~KyL~v~y 842 (845)
|+||+|+.| .|.+|+|||+. .+|+.. ..++|+++.++++|+++|+||++|.|.+++.+|| ||||||+|||+|+|
T Consensus 1 L~C~~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~-dpC~~~~KyL~V~Y 78 (80)
T PF02140_consen 1 LSCPPGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFG-DPCPGTSKYLEVTY 78 (80)
T ss_dssp EE-STTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH---SSTTS--EEEEEE
T ss_pred CCCcCCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccC-CCCCCCCeEEEEEE
Confidence 799999665 69999999975 599742 3568999999999999999999999999999998 99999999999999
Q ss_pred Ee
Q 003137 843 IC 844 (845)
Q Consensus 843 ~C 844 (845)
+|
T Consensus 79 ~C 80 (80)
T PF02140_consen 79 TC 80 (80)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 7
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.77 E-value=4.8e-19 Score=183.32 Aligned_cols=86 Identities=28% Similarity=0.547 Sum_probs=78.8
Q ss_pred CCCCCceeEecCCCCeEEEEeeeccCCC-CCCCCC----ccCCceecCChHHHHHhhcCCCCceEEEecCCCCCCCCCCC
Q 003137 759 KPLRPKAHLMCGPGQKIKSIKFASFGTP-EGVCGS----YRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPCPS 833 (845)
Q Consensus 759 ~~~~~~~~L~C~~g~~I~~I~~A~yGr~-~~~C~~----~~~~~C~~~~s~~~v~~~C~Gk~~C~v~as~~~Fg~DPC~g 833 (845)
+.||..++|+||.|.+|+ |++|+|||. ...|.. ..+.+|..|.|++++.++|++|++|.|.|..++||.|||||
T Consensus 40 aCdG~~i~L~CP~~dvIs-v~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~DPCPg 118 (265)
T KOG4729|consen 40 ACDGERITLSCPRGDVIS-VQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGDDPCPG 118 (265)
T ss_pred eecCceEEEEcCCCCEEE-EEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCCCCCCC
Confidence 599999999999999985 999999994 468953 23579999999999999999999999999999999999999
Q ss_pred CceeEEEEEEeC
Q 003137 834 IMKQLAVEAICG 845 (845)
Q Consensus 834 t~KyL~v~y~C~ 845 (845)
|+|||+|+|.|.
T Consensus 119 T~KYLev~Y~Cv 130 (265)
T KOG4729|consen 119 TSKYLEVQYGCV 130 (265)
T ss_pred chhheEEEeccC
Confidence 999999999994
No 8
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.16 E-value=7.9e-10 Score=120.89 Aligned_cols=192 Identities=21% Similarity=0.311 Sum_probs=124.3
Q ss_pred EEEccCcEEECCeEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHH
Q 003137 33 VSYDSKAIAINGKRRILISGSIHYPR------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKF 106 (845)
Q Consensus 33 v~~d~~~~~idG~~~~~~sG~~Hy~r------~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~f 106 (845)
|.+.++.|+|||||++|-+...|... ++++.|+.+|++||++|+|+|++ .|-|. -.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 57889999999999999999999643 47899999999999999999999 55553 3789
Q ss_pred HHHHHHcCCEEEEecCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecc
Q 003137 107 IKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQI 186 (845)
Q Consensus 107 l~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 186 (845)
+++|.++||.|+.-+ |. .+.-.|-... .......|+.+.+.+.+-+++++++.++|| .||+|=+
T Consensus 65 ~~~cD~~GilV~~e~-~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEI-PL-------EGHGSWQDFG-NCNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE--S--------BSCTSSSSTS-CTSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEEE
T ss_pred HHHHhhcCCEEEEec-cc-------cccCccccCC-ccccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheeec
Confidence 999999999999764 21 1111222111 012456789999998888888888888776 8999999
Q ss_pred cccccCcccccCCCCHHHHHHHHHHHHhcCCCcceeecCCC--CCCCccc-cCCCCccc-----ccCC----C--CCCCC
Q 003137 187 ENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQD--DAPDPLI-NTCNGFYC-----DYFS----P--NKAYK 252 (845)
Q Consensus 187 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~--~~~~~~~-~~~ng~~~-----~~~~----~--~~p~~ 252 (845)
-||-. ...+++.|.+++++..-.-|+....+. ...+... +...+.+. +.+. . ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99982 357788899999987777665443331 0011111 11111110 1111 1 35789
Q ss_pred Cceeeeccccccc
Q 003137 253 PKMWTEAWTGWYT 265 (845)
Q Consensus 253 P~~~~E~~~GWf~ 265 (845)
|++.+||....+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999765554
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.99 E-value=4.7e-08 Score=117.15 Aligned_cols=159 Identities=18% Similarity=0.109 Sum_probs=111.7
Q ss_pred eeEEEccCcEEECCeEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHH
Q 003137 31 GSVSYDSKAIAINGKRRILISGSIHYPR------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLV 104 (845)
Q Consensus 31 ~~v~~d~~~~~idG~~~~~~sG~~Hy~r------~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~ 104 (845)
.+|++++..|+|||+|+++-+...|... ++++.|+.+|+.||++|+|+|++ .|-|. =.
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~-----------~~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY-----------SE 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC-----------CH
Confidence 4578889999999999999999998532 46788999999999999999999 35443 25
Q ss_pred HHHHHHHHcCCEEEEecCceeceecCCCCCCcccc-------c-CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccc
Q 003137 105 KFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK-------Y-IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFES 176 (845)
Q Consensus 105 ~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~-------~-~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~ 176 (845)
+|+++|.++||+|+-... .-|+..|.. + .+....-..+|.+.++..+-+++++++.++|
T Consensus 340 ~~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NH----- 406 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDKNH----- 406 (604)
T ss_pred HHHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhccCC-----
Confidence 899999999999997642 112222221 1 1111111335667666666666666666655
Q ss_pred cCCceEEecccccccCcccccCCCCHHHHHHHHHHHHhcCCCcceeec
Q 003137 177 QGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMC 224 (845)
Q Consensus 177 ~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 224 (845)
..||||-|-||.... ......|++.|.+.+++..-.-|...+
T Consensus 407 --PSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 407 --PSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred --ceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 489999999997542 113457788888888887766665543
No 10
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.92 E-value=2e-09 Score=101.27 Aligned_cols=68 Identities=37% Similarity=0.727 Sum_probs=50.2
Q ss_pred CCCceEEEEEEECCCCCC-CeE-EEe--CCCceEEEEECCeeccccccccccCCCCCcccccCccccccccCCCCCCcee
Q 003137 621 RQPLTWYRTTFSAPAGNA-PLA-LDM--GSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQR 696 (845)
Q Consensus 621 ~~~~~fYr~tF~lp~~~d-p~~-Ld~--~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~iG~~~~~~~~t~cg~PQqt 696 (845)
..+..|||++|.... .| .+. |+. +...+++|||||++|||||+. +| ||++
T Consensus 33 ~~g~~~Yrg~F~~~~-~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~------------~g-------------~q~t 86 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTG-QDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG------------IG-------------PQTT 86 (111)
T ss_dssp SSCEEEEEEEEETTT-EEEEEE-EEECSSTTEEEEEEETTEEEEEEETT------------TE-------------CCEE
T ss_pred CCCCEEEEEEEeCCC-cceeEEEEeccCCCceEEEEEECCEEeeeecCC------------CC-------------ccEE
Confidence 457899999996421 22 233 333 457899999999999999964 46 9999
Q ss_pred EEecCCCccccCCcEEEEE
Q 003137 697 WYHVPRSWLKPTGNLLVVF 715 (845)
Q Consensus 697 lY~VP~~~Lk~g~N~Ivvf 715 (845)
+. ||+++|+.++|.|+|+
T Consensus 87 f~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 87 FS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp EE-E-BTTBTTCEEEEEEE
T ss_pred EE-eCceeecCCCEEEEEE
Confidence 87 9999999876665554
No 11
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.84 E-value=4.8e-08 Score=104.43 Aligned_cols=159 Identities=20% Similarity=0.231 Sum_probs=107.5
Q ss_pred CCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccccCccC-CCCce-eeeccchhHHHHHHHHHHcCCEEEEe
Q 003137 43 NGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-PSPGK-YYFEGNYDLVKFIKLAKQAGLYVNLR 120 (845)
Q Consensus 43 dG~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hE-p~~G~-~df~g~~dl~~fl~~a~~~GL~Vilr 120 (845)
+|+++.+.+-+.|+.. +..-++.+++||++|+|+||+.|.|...+ +.|+. ++=+.-..|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 7999999999999322 12778999999999999999999995544 67764 77666779999999999999999987
Q ss_pred cCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccCcccc--cC
Q 003137 121 IGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYE--IG 198 (845)
Q Consensus 121 pGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~--~~ 198 (845)
+= ..|.|....... ...+...+....+.+.|++++++ ..+|++++|=||....... ..
T Consensus 82 ~h----------~~~~w~~~~~~~---~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----------NAPGWANGGDGY---GNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----------ESTTCSSSTSTT---TTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----------cCcccccccccc---ccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCccccc
Confidence 42 127774332111 12222334444556666666653 3479999999999874211 00
Q ss_pred ----CCCHHHHHHHHHHHHhcCCCcceee
Q 003137 199 ----APGRSYTRWAAKMAVGLGTGVPWIM 223 (845)
Q Consensus 199 ----~~~~~y~~~l~~~~~~~g~~vp~~~ 223 (845)
..-.++.+.+.+.+|+.+.+.+++.
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~ 170 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIV 170 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeec
Confidence 0113455666666777777766554
No 12
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.72 E-value=4.9e-08 Score=91.93 Aligned_cols=84 Identities=20% Similarity=0.319 Sum_probs=58.0
Q ss_pred hhhhcCCCCCCceEEEEEEecCCCCcccccCCCcce-EEec-CcCeEEEEEECCEEEEEEecccCCCeeEEEeeee-ccC
Q 003137 463 LEQINTTRDATDYLWYMTDVKIDPSEGFLRSGNYPV-LTVM-SAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVN-MRA 539 (845)
Q Consensus 463 ~Eql~~t~d~~Gyl~Yrt~~~~~~~~~~~~~~~~~~-L~i~-~~~D~a~VfvNg~~vGs~~~~~~~~~~~~~~~~~-l~~ 539 (845)
.+..+..+++.|++|||++|+..+.++ ... |.+. +.+.+++|||||+++|+.....+ ...+|++|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g-~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGIG-PQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTTE-CCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCCC-ccEEEEeCceeecC
Confidence 455666677999999999997544331 123 4443 67999999999999999883222 2244555543 555
Q ss_pred CCcEEEEEEeccCC
Q 003137 540 GINKIALLSIAVGL 553 (845)
Q Consensus 540 g~n~L~ILven~Gr 553 (845)
+.++|.+|+++||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67899999999996
No 13
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.71 E-value=2.4e-07 Score=116.72 Aligned_cols=259 Identities=17% Similarity=0.132 Sum_probs=149.0
Q ss_pred eEEEccCcEEECCeEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHH
Q 003137 32 SVSYDSKAIAINGKRRILISGSIHYPR------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVK 105 (845)
Q Consensus 32 ~v~~d~~~~~idG~~~~~~sG~~Hy~r------~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~ 105 (845)
+|.++++.|+|||+|+++-+...|-.. ++++.|+.+|+.||++|+|+|++ .|-|. =.+
T Consensus 319 ~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~-----------~~~ 382 (1021)
T PRK10340 319 DIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN-----------DPR 382 (1021)
T ss_pred EEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CHH
Confidence 467788899999999999999988432 47889999999999999999999 25443 358
Q ss_pred HHHHHHHcCCEEEEecCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEec
Q 003137 106 FIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ 185 (845)
Q Consensus 106 fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 185 (845)
|+++|.++||+|+-.. |..|..|.. .. +...-+++|.+.++..+=+++++++.++| ..||||=
T Consensus 383 fydlcDe~GllV~dE~-~~e~~g~~~-------~~--~~~~~~~~p~~~~~~~~~~~~mV~RdrNH-------PSIi~Ws 445 (1021)
T PRK10340 383 FYELCDIYGLFVMAET-DVESHGFAN-------VG--DISRITDDPQWEKVYVDRIVRHIHAQKNH-------PSIIIWS 445 (1021)
T ss_pred HHHHHHHCCCEEEECC-cccccCccc-------cc--ccccccCCHHHHHHHHHHHHHHHHhCCCC-------CEEEEEE
Confidence 9999999999999764 322222211 00 01112466777655444455565555544 5899999
Q ss_pred ccccccCcccccCCCCHHHHHHHHHHHHhcCCCcceeecCCCCC--CCccccCCCCcc--cccCCCCCCCCCceeeeccc
Q 003137 186 IENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCKQDDA--PDPLINTCNGFY--CDYFSPNKAYKPKMWTEAWT 261 (845)
Q Consensus 186 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~--~~~~~~~~ng~~--~~~~~~~~p~~P~~~~E~~~ 261 (845)
+-||-+. + . .++.+.+.+++..-.-|+ +..+... ..+++...-+.. .+.+....+++|++.+||--
T Consensus 446 lGNE~~~-----g---~-~~~~~~~~~k~~DptR~v-~~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~h 515 (1021)
T PRK10340 446 LGNESGY-----G---C-NIRAMYHAAKALDDTRLV-HYEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYAH 515 (1021)
T ss_pred CccCccc-----c---H-HHHHHHHHHHHhCCCceE-EeCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchHh
Confidence 9999753 2 1 246677777776666554 3332111 111221111111 01222334579999999842
Q ss_pred ccccccCCCCCCCChHHHHHHHHHH-HHhCCeee--------------eeeeeecCCCCCCCCCCCCccccCCCCCCCCc
Q 003137 262 GWYTEFGGPVPHRPVEDLAFSVAKF-IQKGGSFI--------------NYYMYHGGTNFGRTAGGPFIATSYDYDAPLDE 326 (845)
Q Consensus 262 GWf~~WG~~~~~~~~~~~~~~~~~~-l~~g~s~~--------------n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E 326 (845)
+. |. .....++.-..+.+- .-.|+-+- .-|+.+|| .||-+. -..++--+--++-
T Consensus 516 am----gn--~~g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygG-d~g~~p----~~~~f~~~Glv~~ 584 (1021)
T PRK10340 516 AM----GN--GPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGG-DYGDYP----NNYNFCIDGLIYP 584 (1021)
T ss_pred cc----CC--CCCCHHHHHHHHHhCCceeEEeeeecCcccccccCCCCCEEEEECC-CCCCCC----CCcCcccceeECC
Confidence 21 21 000123322222210 00011100 12344555 244221 1122333467888
Q ss_pred CCCCCchhHHHHHHHHHHH
Q 003137 327 YGLLRQPKWGHLKDLHRAI 345 (845)
Q Consensus 327 ~G~~~t~Ky~~lr~l~~~~ 345 (845)
++.+ .|.|.+.|.+.+-+
T Consensus 585 dr~p-~p~~~e~k~~~~pv 602 (1021)
T PRK10340 585 DQTP-GPGLKEYKQVIAPV 602 (1021)
T ss_pred CCCC-ChhHHHHHHhcceE
Confidence 9998 59999999886543
No 14
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.68 E-value=3.5e-07 Score=115.20 Aligned_cols=148 Identities=18% Similarity=0.220 Sum_probs=104.2
Q ss_pred eEEEccCcEEECCeEeEEEEEEeeCC------CCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHH
Q 003137 32 SVSYDSKAIAINGKRRILISGSIHYP------RSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVK 105 (845)
Q Consensus 32 ~v~~d~~~~~idG~~~~~~sG~~Hy~------r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~ 105 (845)
+|+++++.|+|||+|+++-+...|-. +++++.|+++|+.||++|+|+|++ .|-|. =.+
T Consensus 335 ~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p~ 398 (1027)
T PRK09525 335 KVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HPL 398 (1027)
T ss_pred EEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CHH
Confidence 46777889999999999999999842 358899999999999999999999 35443 268
Q ss_pred HHHHHHHcCCEEEEecCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEec
Q 003137 106 FIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ 185 (845)
Q Consensus 106 fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 185 (845)
|+++|.++||+|+-... . | ..|-.|.. . + .+||.|.+++..=+++++.+.++| ..||||=
T Consensus 399 fydlcDe~GilV~dE~~-~---e-~hg~~~~~---~----~-~~dp~~~~~~~~~~~~mV~RdrNH-------PSIi~WS 458 (1027)
T PRK09525 399 WYELCDRYGLYVVDEAN-I---E-THGMVPMN---R----L-SDDPRWLPAMSERVTRMVQRDRNH-------PSIIIWS 458 (1027)
T ss_pred HHHHHHHcCCEEEEecC-c---c-ccCCcccc---C----C-CCCHHHHHHHHHHHHHHHHhCCCC-------CEEEEEe
Confidence 89999999999997642 1 1 11111110 0 1 457778776655555666655544 5899999
Q ss_pred ccccccCcccccCCCCHHHHHHHHHHHHhcCCCcceeec
Q 003137 186 IENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMC 224 (845)
Q Consensus 186 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 224 (845)
+-||-+. + ...+.+.+.+++..-.-|....
T Consensus 459 lgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 459 LGNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred CccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 9999753 2 1245566667766656665443
No 15
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=1.1e-06 Score=107.18 Aligned_cols=135 Identities=21% Similarity=0.330 Sum_probs=103.6
Q ss_pred eeEEEccCcEEECCeEeEEEEEEeeCCC-----C-CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHH
Q 003137 31 GSVSYDSKAIAINGKRRILISGSIHYPR-----S-SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLV 104 (845)
Q Consensus 31 ~~v~~d~~~~~idG~~~~~~sG~~Hy~r-----~-~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~ 104 (845)
.+|.++...|.|||||+++-+..-|.+- . ..+.-+++|++||++|+|+|+| | |-|. =.
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt---s--HyP~-----------~~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT---S--HYPN-----------SE 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe---c--CCCC-----------CH
Confidence 4688888899999999999999999744 3 3444889999999999999999 4 6665 47
Q ss_pred HHHHHHHHcCCEEEEecCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEe
Q 003137 105 KFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILS 184 (845)
Q Consensus 105 ~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 184 (845)
+|++||.++||+||--+ ..||- |+| +|+.|++.+..=+++++++.++|| .||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~--~~~-------------~~~~~~k~~~~~i~~mver~knHP-------SIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETH--GMP-------------DDPEWRKEVSEEVRRMVERDRNHP-------SIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhc--CCC-------------CCcchhHHHHHHHHHHHHhccCCC-------cEEEE
Confidence 89999999999999874 22331 122 788898888887888888887665 89999
Q ss_pred cccccccCcccccCCCCHHHHHHHHHHH
Q 003137 185 QIENEYGPMEYEIGAPGRSYTRWAAKMA 212 (845)
Q Consensus 185 QiENEyg~~~~~~~~~~~~y~~~l~~~~ 212 (845)
=+-||-|. +.....-..|.++.-
T Consensus 402 s~gNE~~~-----g~~~~~~~~~~k~~d 424 (808)
T COG3250 402 SLGNESGH-----GSNHWALYRWFKASD 424 (808)
T ss_pred eccccccC-----ccccHHHHHHHhhcC
Confidence 99999774 223333345554443
No 16
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.14 E-value=1.1e-05 Score=80.57 Aligned_cols=99 Identities=25% Similarity=0.337 Sum_probs=70.1
Q ss_pred CCCCceEEEEEEecCCCCcccccCCCcceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCC-cEEEEEE
Q 003137 470 RDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGI-NKIALLS 548 (845)
Q Consensus 470 ~d~~Gyl~Yrt~~~~~~~~~~~~~~~~~~L~i~~~~D~a~VfvNg~~vGs~~~~~~~~~~~~~~~~~l~~g~-n~L~ILv 548 (845)
....|+.|||++|..+... .+....|.+.++++.+.|||||++||...+.. ..+.+.++-.|+.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEE
Confidence 4478999999999876432 23456799999999999999999999987643 345566665678886 9999999
Q ss_pred eccCCccccCCC-CcccccccccEEEc
Q 003137 549 IAVGLPNVGPHF-ETWNAGVLGPVTLN 574 (845)
Q Consensus 549 en~GrvNyG~~~-~~~~kGI~g~V~l~ 574 (845)
.+...-.+-+.. .....||.++|.|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 865543221111 13468999988873
No 17
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.96 E-value=2.5e-05 Score=83.87 Aligned_cols=116 Identities=23% Similarity=0.347 Sum_probs=86.3
Q ss_pred cCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHH
Q 003137 85 WNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKI 164 (845)
Q Consensus 85 Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l 164 (845)
|...||+||+|||+ .++++++.|+++||.| |..+.+ |.. ..|.|+...+ .+...+++.+|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 7999999999999998 433333 433 6899997533 245567888888888
Q ss_pred HHHHHhcccccccCCceEEecccccccCccc------cc-CCCCHHHHHHHHHHHHhcCCCcceeecC
Q 003137 165 VDMMKAERLFESQGGPIILSQIENEYGPMEY------EI-GAPGRSYTRWAAKMAVGLGTGVPWIMCK 225 (845)
Q Consensus 165 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~~------~~-~~~~~~y~~~l~~~~~~~g~~vp~~~~~ 225 (845)
+.+++ |.|..|+|=||.-.... .+ ...+.+|+...-+.+++...++.++.++
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd 125 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND 125 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec
Confidence 88776 46899999999543210 11 1134578888888888887778787765
No 18
>PLN02705 beta-amylase
Probab=97.96 E-value=2e-05 Score=91.34 Aligned_cols=81 Identities=20% Similarity=0.348 Sum_probs=64.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCC-CCceeeeccchhHHHHHHHHHHcCCEEE--EecCceeceecCCC----
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYVN--LRIGPYVCAEWNFG---- 132 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~GL~Vi--lrpGPyicaEw~~G---- 132 (845)
.++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++++++++.||++. |.+ .-|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 3455688999999999999999999999998 699999997 7888999999999954 553 33443 222
Q ss_pred -CCCccccc----CCCeee
Q 003137 133 -GFPVWLKY----IPGINF 146 (845)
Q Consensus 133 -G~P~WL~~----~p~~~~ 146 (845)
-||.|+.+ +|+|.+
T Consensus 340 IPLP~WV~e~g~~nPDiff 358 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFF 358 (681)
T ss_pred ccCCHHHHHhcccCCCcee
Confidence 38999985 467644
No 19
>PLN02905 beta-amylase
Probab=97.88 E-value=3.8e-05 Score=89.29 Aligned_cols=79 Identities=20% Similarity=0.467 Sum_probs=62.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCC-CCceeeeccchhHHHHHHHHHHcCCEEE--EecCceeceecCCC-----C
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYVN--LRIGPYVCAEWNFG-----G 133 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~GL~Vi--lrpGPyicaEw~~G-----G 133 (845)
+.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++++++++.||++. |.+ .-|+- +-| -
T Consensus 286 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~IP 359 (702)
T PLN02905 286 DGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCIP 359 (702)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccccc
Confidence 34577899999999999999999999998 799999997 7888999999999954 543 33433 112 3
Q ss_pred CCccccc----CCCeee
Q 003137 134 FPVWLKY----IPGINF 146 (845)
Q Consensus 134 ~P~WL~~----~p~~~~ 146 (845)
||.|+.+ +|+|.+
T Consensus 360 LP~WV~e~g~~nPDiff 376 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFF 376 (702)
T ss_pred CCHHHHHhhhcCCCceE
Confidence 8999975 577654
No 20
>PLN02801 beta-amylase
Probab=97.87 E-value=3.9e-05 Score=87.81 Aligned_cols=81 Identities=23% Similarity=0.523 Sum_probs=64.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCC-CCceeeeccchhHHHHHHHHHHcCCEEE--EecCceeceecCCC----
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYVN--LRIGPYVCAEWNFG---- 132 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~GL~Vi--lrpGPyicaEw~~G---- 132 (845)
.++.-+..|+++|++|++.|.+.|.|.+.|. .|++|||+| ..+++++++++||++. |.+ .-|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556788999999999999999999999998 599999997 7888999999999954 543 23333 111
Q ss_pred -CCCccccc----CCCeee
Q 003137 133 -GFPVWLKY----IPGINF 146 (845)
Q Consensus 133 -G~P~WL~~----~p~~~~ 146 (845)
-||.|+.+ +|++.+
T Consensus 109 IpLP~WV~~~g~~~pDi~f 127 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIFY 127 (517)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999985 567643
No 21
>PLN00197 beta-amylase; Provisional
Probab=97.86 E-value=4.1e-05 Score=88.24 Aligned_cols=81 Identities=28% Similarity=0.564 Sum_probs=64.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCC-CCceeeeccchhHHHHHHHHHHcCCEEE--EecCceeceecCCC----
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYVN--LRIGPYVCAEWNFG---- 132 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~GL~Vi--lrpGPyicaEw~~G---- 132 (845)
.++.-+..|+++|++|++-|.+-|.|.+.|. .|++|||+| ..++++++++.||++. |.+ .-|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556788999999999999999999999998 799999997 7888999999999955 543 23433 112
Q ss_pred -CCCccccc----CCCeee
Q 003137 133 -GFPVWLKY----IPGINF 146 (845)
Q Consensus 133 -G~P~WL~~----~p~~~~ 146 (845)
-||.|+.+ +|++.+
T Consensus 199 IpLP~WV~~~g~~dpDiff 217 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAY 217 (573)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999975 577654
No 22
>PLN02803 beta-amylase
Probab=97.78 E-value=6.4e-05 Score=86.44 Aligned_cols=80 Identities=21% Similarity=0.544 Sum_probs=63.0
Q ss_pred cccHHHHHHHHHHCCCCEEEEccccCccCC-CCceeeeccchhHHHHHHHHHHcCCEEE--EecCceeceecCCC-----
Q 003137 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYVN--LRIGPYVCAEWNFG----- 132 (845)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~GL~Vi--lrpGPyicaEw~~G----- 132 (845)
++.-+..|+++|++|++-|.+-|.|.+.|. .|++|||+| ..++++++++.||++. |.+ .-|+- +-|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~I 179 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCSI 179 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCcccc
Confidence 344577999999999999999999999998 599999997 7888999999999955 543 23433 112
Q ss_pred CCCccccc----CCCeee
Q 003137 133 GFPVWLKY----IPGINF 146 (845)
Q Consensus 133 G~P~WL~~----~p~~~~ 146 (845)
-||.|+.+ +|+|.+
T Consensus 180 pLP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 180 PLPPWVLEEMSKNPDLVY 197 (548)
T ss_pred cCCHHHHHhhhcCCCceE
Confidence 28999975 577654
No 23
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.78 E-value=0.00022 Score=77.90 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=83.3
Q ss_pred eeEEEccCcEE--ECCeEeEEEEEEeeCCC-----------CCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeee
Q 003137 31 GSVSYDSKAIA--INGKRRILISGSIHYPR-----------SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYF 97 (845)
Q Consensus 31 ~~v~~d~~~~~--idG~~~~~~sG~~Hy~r-----------~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df 97 (845)
..|++.++.|. .+|++|+|.+-.+.+.- ..++.|+.++..||++|+|||++|-.
T Consensus 9 ~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~v------------- 75 (314)
T PF03198_consen 9 PPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSV------------- 75 (314)
T ss_dssp --EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---------------
T ss_pred CCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEe-------------
Confidence 56888888888 78999998877665422 24678999999999999999999732
Q ss_pred ccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccccCCCeeeecCCh--hhHHHHHHHHHHHHHHHHhccccc
Q 003137 98 EGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENG--PFKAEMHKFTKKIVDMMKAERLFE 175 (845)
Q Consensus 98 ~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~--~y~~~~~~~~~~l~~~l~~~~~~~ 175 (845)
+-..|-++++++.++.||||||..+. |...+-..+| .|-...-.-+.++++.+++++
T Consensus 76 dp~~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~--- 134 (314)
T PF03198_consen 76 DPSKNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD--- 134 (314)
T ss_dssp -TTS--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-T---
T ss_pred CCCCCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccCC---
Confidence 22347899999999999999998642 2223334445 453333233344566677543
Q ss_pred ccCCceEEecccccccCcccccCCCCHHHH----HHHHHHHHhcCC-Ccce
Q 003137 176 SQGGPIILSQIENEYGPMEYEIGAPGRSYT----RWAAKMAVGLGT-GVPW 221 (845)
Q Consensus 176 ~~gGpII~~QiENEyg~~~~~~~~~~~~y~----~~l~~~~~~~g~-~vp~ 221 (845)
+++++=+-||--.-.. ......|+ +-+|+-+++.+. .+|+
T Consensus 135 ----N~LgFf~GNEVin~~~--~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 135 ----NTLGFFAGNEVINDAS--NTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp ----TEEEEEEEESSS-STT---GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred ----ceEEEEecceeecCCC--CcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 8999999999865321 11233444 445555555555 4453
No 24
>PLN02161 beta-amylase
Probab=97.75 E-value=9e-05 Score=84.85 Aligned_cols=82 Identities=21% Similarity=0.363 Sum_probs=62.8
Q ss_pred cccHHHHHHHHHHCCCCEEEEccccCccCC-CCceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCC-----CC
Q 003137 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFG-----GF 134 (845)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~G-----G~ 134 (845)
++.-+..|+++|++|++.|.+-|.|.+.|. .|++|||+| ..++++++++.||++..-..=.-|+- +-| -|
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpL 191 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISL 191 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccC
Confidence 344577899999999999999999999998 799999997 78889999999999553322233332 111 27
Q ss_pred Cccccc----CCCeee
Q 003137 135 PVWLKY----IPGINF 146 (845)
Q Consensus 135 P~WL~~----~p~~~~ 146 (845)
|.|+.+ +|+|.+
T Consensus 192 P~WV~~~g~~~pDi~f 207 (531)
T PLN02161 192 PLWIREIGDVNKDIYY 207 (531)
T ss_pred CHHHHhhhccCCCceE
Confidence 999985 577754
No 25
>TIGR03356 BGL beta-galactosidase.
Probab=97.63 E-value=0.00015 Score=83.82 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=80.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCccccc
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~ 140 (845)
..|+++|+.||++|+|++++-|.|...+|. +|++|.+|-...+++|+.+.++||.+|+--= .=.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 468999999999999999999999999999 7999998888999999999999999886531 2358999986
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003137 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (845)
Q Consensus 141 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 170 (845)
..+- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5442 3466667777777777777773
No 26
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.56 E-value=9.2e-05 Score=83.39 Aligned_cols=114 Identities=18% Similarity=0.306 Sum_probs=73.6
Q ss_pred cHHHHHHHHHHCCCCEEEEccccCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCceecee----cCCCCCCcc
Q 003137 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE----WNFGGFPVW 137 (845)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaE----w~~GG~P~W 137 (845)
.-+..|+++|++|+..|.+.|.|.+.|.. |++|||+| .+++.+++++.||++..-..=.-|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 45678999999999999999999999997 99999996 88899999999999654321122321 111137999
Q ss_pred ccc---CCCeeeec--------------CChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecc
Q 003137 138 LKY---IPGINFRT--------------ENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQI 186 (845)
Q Consensus 138 L~~---~p~~~~R~--------------~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 186 (845)
+.+ ..+|.+.. .... ++.-+.|++.....++ ++. +.|..|||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 974 22553311 1122 5555666666666666 432 67888886
No 27
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.45 E-value=0.0005 Score=75.42 Aligned_cols=224 Identities=22% Similarity=0.309 Sum_probs=112.1
Q ss_pred cCcEE-ECCeEeEEEEEEeeC---CCCCcccHHHHHHHHHHCCCCEEEEccc--cCcc--------CC----CCceeeec
Q 003137 37 SKAIA-INGKRRILISGSIHY---PRSSPEMWPDLIQKAKDGGLDVIQTYVF--WNGH--------EP----SPGKYYFE 98 (845)
Q Consensus 37 ~~~~~-idG~~~~~~sG~~Hy---~r~~~~~W~~~l~k~ka~GlN~V~~yv~--Wn~h--------Ep----~~G~~df~ 98 (845)
++.|. -||+||+.++ .-.+ .|...++|+.-|+..|+-|||+|++=|+ |..+ .| .++++||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 56677 7999999998 4444 3568899999999999999999998766 4322 12 22347776
Q ss_pred cc-----hhHHHHHHHHHHcCCEEEEec---CceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003137 99 GN-----YDLVKFIKLAKQAGLYVNLRI---GPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (845)
Q Consensus 99 g~-----~dl~~fl~~a~~~GL~Vilrp---GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 170 (845)
.. ..|++.|++|.+.||.+.|-| +||.-+-|-+| ...| =.+.+++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--------~~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--------PNIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------------TTSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--------ccCC--------CHHHHHHHHHHHHHHHhc
Confidence 53 589999999999999976532 23333334332 1111 136788999999999996
Q ss_pred cccccccCCceEEecccccccCcccccCCCCHHHHHHHHHHHHhcCCCcceeecC--CC-CCC-----Cccc--cC-CCC
Q 003137 171 ERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGVPWIMCK--QD-DAP-----DPLI--NT-CNG 239 (845)
Q Consensus 171 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~--~~-~~~-----~~~~--~~-~ng 239 (845)
.+ +|| |=|-||+ . ......++.+.+.+.+++..-.- +++.- +. ..+ .+-+ .. ..|
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~-L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsg 210 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQ-LITIHPCGRTSSPDWFHDEPWLDFNMYQSG 210 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS--EEEEE-BTEBTHHHHTT-TT--SEEEB--
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCcchhhcCCCcceEEEeecC
Confidence 53 455 5588999 1 23467788888888887754322 33321 11 010 0001 00 112
Q ss_pred ccc---c-------cCC-CCCCCCCceeeec-ccccccccCCCCCCCChHHHHHHHHHHHHhCC
Q 003137 240 FYC---D-------YFS-PNKAYKPKMWTEA-WTGWYTEFGGPVPHRPVEDLAFSVAKFIQKGG 291 (845)
Q Consensus 240 ~~~---~-------~~~-~~~p~~P~~~~E~-~~GWf~~WG~~~~~~~~~~~~~~~~~~l~~g~ 291 (845)
... + .+. ...|.+|.+..|- |.|.-..+.......+++++...+=+-+-+|+
T Consensus 211 h~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 211 HNRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp S--TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CCcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 111 0 011 4568999999996 44543333333334577777655444455666
No 28
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.70 E-value=0.0022 Score=71.37 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=106.5
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEc--cccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceec
Q 003137 49 LISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTY--VFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVC 126 (845)
Q Consensus 49 ~~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~y--v~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyic 126 (845)
.++..++..++..+. ..+.+-..-+|.|..- .-|...||++|+|||+ ..+++++.|+++||.|---+ .+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv- 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV- 81 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE-
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE-
Confidence 688899887765442 3344444568888874 6699999999999999 79999999999999875221 11
Q ss_pred eecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccCccc---------cc
Q 003137 127 AEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEY---------EI 197 (845)
Q Consensus 127 aEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~---------~~ 197 (845)
|.. ..|.|+...+... ....+...+.+++++..++.++++. |.|.+|-|=||--.... -+
T Consensus 82 --W~~-~~P~w~~~~~~~~-~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~~~ 150 (320)
T PF00331_consen 82 --WHS-QTPDWVFNLANGS-PDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSPWY 150 (320)
T ss_dssp --ESS-SS-HHHHTSTTSS-BHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSHHH
T ss_pred --Ecc-cccceeeeccCCC-cccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCChhh
Confidence 433 7899998751100 0001247888899999988888721 78999999999643211 01
Q ss_pred CCCCHHHHHHHHHHHHhcCCCcceeecCC
Q 003137 198 GAPGRSYTRWAAKMAVGLGTGVPWIMCKQ 226 (845)
Q Consensus 198 ~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 226 (845)
...+.+|+...-+++++...++.||.++-
T Consensus 151 ~~lG~~yi~~aF~~A~~~~P~a~L~~NDy 179 (320)
T PF00331_consen 151 DALGPDYIADAFRAAREADPNAKLFYNDY 179 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSEEEEEES
T ss_pred hcccHhHHHHHHHHHHHhCCCcEEEeccc
Confidence 11345788888888888777888888764
No 29
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.65 E-value=0.002 Score=75.06 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=73.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccc
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 139 (845)
..|+++|+.||++|+|+.++-|.|.-.+|. +|++|-+|....+++|+.+.++||..++-- -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 458999999999999999999999999999 699999999999999999999999966542 2457999998
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003137 140 YIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (845)
Q Consensus 140 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 170 (845)
+.-+- .++...+.-.+|.+.+++++.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 74332 2466667777777777777774
No 30
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.63 E-value=0.011 Score=71.54 Aligned_cols=100 Identities=24% Similarity=0.201 Sum_probs=69.2
Q ss_pred CCCceEEEEEEecCCCCcccccCCCcceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCC-cEEEEEEe
Q 003137 471 DATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGI-NKIALLSI 549 (845)
Q Consensus 471 d~~Gyl~Yrt~~~~~~~~~~~~~~~~~~L~i~~~~D~a~VfvNg~~vGs~~~~~~~~~~~~~~~~~l~~g~-n~L~ILve 549 (845)
+..|..|||++|.++... .+....|.++++.-.+.|||||++||...+.. ..+.++++-.|+.|. |+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 367899999999876431 23457899999999999999999999987543 345566554567774 59999998
Q ss_pred ccCCcc---ccCCC-------------C-cccccccccEEEccc
Q 003137 550 AVGLPN---VGPHF-------------E-TWNAGVLGPVTLNGL 576 (845)
Q Consensus 550 n~GrvN---yG~~~-------------~-~~~kGI~g~V~l~g~ 576 (845)
|.-+.. .|... + -...||..+|.|...
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 742210 11100 0 135799999998543
No 31
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.015 Score=63.86 Aligned_cols=133 Identities=18% Similarity=0.270 Sum_probs=100.5
Q ss_pred HHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccccCCCeeeecCC
Q 003137 71 AKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTEN 150 (845)
Q Consensus 71 ~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d 150 (845)
.|+.+.=|-+.-.=|+..||++|.|+|+ --|+..+.|+++||.+ |-=+.| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~l--hGHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPL--HGHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCee--ccceee---ecc-cCCchhhccc-----cCh
Confidence 5566655555667799999999999999 5899999999999954 332333 444 6899998643 234
Q ss_pred hhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccCccc----c---cCCCCHHHHHHHHHHHHhcCCCcceee
Q 003137 151 GPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEY----E---IGAPGRSYTRWAAKMAVGLGTGVPWIM 223 (845)
Q Consensus 151 ~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~----~---~~~~~~~y~~~l~~~~~~~g~~vp~~~ 223 (845)
++.++.+++++..++.+++ |-|+.|-|=||--.-.. . .+..+.+|+++.-+.+++.+-+--|+.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7788999999999999998 35999999999744211 1 123678899999999998877777777
Q ss_pred cCC
Q 003137 224 CKQ 226 (845)
Q Consensus 224 ~~~ 226 (845)
++-
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 664
No 32
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.56 E-value=0.028 Score=56.93 Aligned_cols=135 Identities=16% Similarity=0.222 Sum_probs=80.4
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEccccCccC-----CC---CceeeeccchhHHHHHHHHHHcCCEEEEecCceecee
Q 003137 57 PRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-----PS---PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (845)
Q Consensus 57 ~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hE-----p~---~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaE 128 (845)
-.++++.|+.+|+.||++|+++|=+= |...+ |. ++.|.-.....|+.+|++|++.||+|.+..+ .
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~--- 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--F--- 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--C---
Confidence 47899999999999999999998421 32211 11 2233334445899999999999999998643 1
Q ss_pred cCCCCCCcccccCCCeeeecCChhh-HHHHHHHHHHHHHHHHhcccccccCCceEEecccccccCcccccCCCCHHHHHH
Q 003137 129 WNFGGFPVWLKYIPGINFRTENGPF-KAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRW 207 (845)
Q Consensus 129 w~~GG~P~WL~~~p~~~~R~~d~~y-~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~ 207 (845)
-|.|..+ .|+.. .+.-++...+|.++.. +....-+|=|-.|..... ....++.+.
T Consensus 88 -----~~~~w~~--------~~~~~~~~~~~~v~~el~~~yg-------~h~sf~GWYip~E~~~~~----~~~~~~~~~ 143 (166)
T PF14488_consen 88 -----DPDYWDQ--------GDLDWEAERNKQVADELWQRYG-------HHPSFYGWYIPYEIDDYN----WNAPERFAL 143 (166)
T ss_pred -----Cchhhhc--------cCHHHHHHHHHHHHHHHHHHHc-------CCCCCceEEEecccCCcc----cchHHHHHH
Confidence 1333332 12222 1112233334434333 344667787888887642 235666677
Q ss_pred HHHHHHhcCCCccee
Q 003137 208 AAKMAVGLGTGVPWI 222 (845)
Q Consensus 208 l~~~~~~~g~~vp~~ 222 (845)
|.+.+++.--+.|+.
T Consensus 144 l~~~lk~~s~~~Pv~ 158 (166)
T PF14488_consen 144 LGKYLKQISPGKPVM 158 (166)
T ss_pred HHHHHHHhCCCCCeE
Confidence 776666543344443
No 33
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.008 Score=69.17 Aligned_cols=137 Identities=15% Similarity=0.088 Sum_probs=80.7
Q ss_pred CcEEECCeEeEEEEEEeeCCCC-CcccH-----HHHHHHHHHCCCCEEEEccccCccCCC----CceeeeccchhHHHHH
Q 003137 38 KAIAINGKRRILISGSIHYPRS-SPEMW-----PDLIQKAKDGGLDVIQTYVFWNGHEPS----PGKYYFEGNYDLVKFI 107 (845)
Q Consensus 38 ~~~~idG~~~~~~sG~~Hy~r~-~~~~W-----~~~l~k~ka~GlN~V~~yv~Wn~hEp~----~G~~df~g~~dl~~fl 107 (845)
..+.+.+...+.+--.-|-... ....| ++.+..||.+|||+||+++.|..+++. |...+-+-...|++.|
T Consensus 43 ~~~~~~~~~~~g~~lg~~~~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I 122 (407)
T COG2730 43 SPGQLVGVSWFGLNLGNHLAQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAI 122 (407)
T ss_pred CcceeecccccceecCchhhcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHH
Confidence 3334344333333333333332 45568 899999999999999999994444554 3333222223799999
Q ss_pred HHHHHcCCEEEEec----CceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEE
Q 003137 108 KLAKQAGLYVNLRI----GPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIIL 183 (845)
Q Consensus 108 ~~a~~~GL~Vilrp----GPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~ 183 (845)
+.|++.||+|+|-. |.-.|- =..|....-. .....+++..+-+..|+.+.+ +.-.||+
T Consensus 123 ~~a~~~gi~V~iD~H~~~~~~~~~------~~s~~~~~~~-----~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg 184 (407)
T COG2730 123 NWAKKLGIYVLIDLHGYPGGNNGH------EHSGYTSDYK-----EENENVEATIDIWKFIANRFK-------NYDTVIG 184 (407)
T ss_pred HHHHhcCeeEEEEecccCCCCCCc------Cccccccccc-----ccchhHHHHHHHHHHHHHhcc-------CCCceee
Confidence 99999999999973 221111 1123221100 012233444444455555555 3458999
Q ss_pred ecccccccC
Q 003137 184 SQIENEYGP 192 (845)
Q Consensus 184 ~QiENEyg~ 192 (845)
+|+=||.-.
T Consensus 185 ~~~~NEP~~ 193 (407)
T COG2730 185 FELINEPNG 193 (407)
T ss_pred eeeecCCcc
Confidence 999999874
No 34
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.40 E-value=0.0055 Score=61.05 Aligned_cols=67 Identities=31% Similarity=0.559 Sum_probs=50.2
Q ss_pred CCCceEEEEEEECCCCC--CCeEEEeCCC-ceEEEEECCeeccccccccccCCCCCcccccCccccccccCCCCCCceeE
Q 003137 621 RQPLTWYRTTFSAPAGN--APLALDMGSM-GKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRW 697 (845)
Q Consensus 621 ~~~~~fYr~tF~lp~~~--dp~~Ld~~g~-gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~iG~~~~~~~~t~cg~PQqtl 697 (845)
..+..|||++|++|... ..++|.+.+. ....|||||+.+|+.... | ...+
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~---------------~-----------~~~~- 118 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGG---------------Y-----------TPFE- 118 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEEST---------------T-----------S-EE-
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCC---------------c-----------CCeE-
Confidence 34789999999998743 3588998876 589999999999997511 1 2223
Q ss_pred EecCCCccccCC-cEEEEE
Q 003137 698 YHVPRSWLKPTG-NLLVVF 715 (845)
Q Consensus 698 Y~VP~~~Lk~g~-N~Ivvf 715 (845)
|-|+. .|++|+ |+|.|.
T Consensus 119 ~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 119 FDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp EECGG-GSSSEEEEEEEEE
T ss_pred EeChh-hccCCCCEEEEEE
Confidence 56865 789888 998873
No 35
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.30 E-value=0.01 Score=69.58 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=74.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccc
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 139 (845)
..|+++++.||++|+|+.++-+.|.-.+|. ++++|-+|....+++|+.+.++||..++-. -.=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 447999999999999999999999999997 566888888899999999999999976542 2336899997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003137 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (845)
Q Consensus 140 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 169 (845)
.. -+- .++...++..+|.+.+++++.
T Consensus 143 ~~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 143 TEYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred HhcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 63 332 345555555666666666665
No 36
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.30 E-value=0.012 Score=69.19 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=77.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccc
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 139 (845)
..|+++++.||++|+|+-++-|.|.-..|. +|++|-.|....+++|+.+.++||..++-. -.=.+|.||.
T Consensus 69 hry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~ 140 (477)
T PRK15014 69 GHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLV 140 (477)
T ss_pred cccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 458999999999999999999999999997 567898899999999999999999977652 1236899997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003137 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (845)
Q Consensus 140 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 170 (845)
.. -+- .++...++-.+|.+.+++++.+
T Consensus 141 ~~yGGW----~n~~~~~~F~~Ya~~~f~~fgd 168 (477)
T PRK15014 141 QQYGSW----TNRKVVDFFVRFAEVVFERYKH 168 (477)
T ss_pred HhcCCC----CChHHHHHHHHHHHHHHHHhcC
Confidence 64 332 3455666666677777776663
No 37
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.27 E-value=0.016 Score=74.04 Aligned_cols=95 Identities=21% Similarity=0.286 Sum_probs=67.6
Q ss_pred CceEEEEEEecCCCCcccccCCCcceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCCcEEEEEEeccC
Q 003137 473 TDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAVG 552 (845)
Q Consensus 473 ~Gyl~Yrt~~~~~~~~~~~~~~~~~~L~i~~~~D~a~VfvNg~~vGs~~~~~~~~~~~~~~~~~l~~g~n~L~ILven~G 552 (845)
.|-.|||++|.++..- .+....|.++++...+.|||||++||...+.. ..+.|.++--|+.|.|+|.|.|.+..
T Consensus 108 n~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~ 181 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWA 181 (1021)
T ss_pred CCeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecC
Confidence 3667999999876431 23457899999999999999999999876543 34556555457778899999997543
Q ss_pred CccccCCCCc----ccccccccEEEccc
Q 003137 553 LPNVGPHFET----WNAGVLGPVTLNGL 576 (845)
Q Consensus 553 rvNyG~~~~~----~~kGI~g~V~l~g~ 576 (845)
. |..++. ...||..+|.|--.
T Consensus 182 d---~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 182 D---STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred C---CCccccCCccccccccceEEEEEe
Confidence 2 222221 23799999988544
No 38
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.06 E-value=0.03 Score=71.46 Aligned_cols=95 Identities=21% Similarity=0.248 Sum_probs=65.8
Q ss_pred CceEEEEEEecCCCCcccccCCC-cceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCCCcEEEEEEecc
Q 003137 473 TDYLWYMTDVKIDPSEGFLRSGN-YPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAGINKIALLSIAV 551 (845)
Q Consensus 473 ~Gyl~Yrt~~~~~~~~~~~~~~~-~~~L~i~~~~D~a~VfvNg~~vGs~~~~~~~~~~~~~~~~~l~~g~n~L~ILven~ 551 (845)
.|-.|||++|.++.+- .+. ...|.++++.-.+.|||||++||...+.. ..+.|.++-.|+.|.|+|.|.|..-
T Consensus 119 n~~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec
Confidence 4678999999876431 122 46899999999999999999999876532 3455665545778889999988432
Q ss_pred CCccccCCCCc----ccccccccEEEccc
Q 003137 552 GLPNVGPHFET----WNAGVLGPVTLNGL 576 (845)
Q Consensus 552 GrvNyG~~~~~----~~kGI~g~V~l~g~ 576 (845)
- -|..++. ...||..+|.|--.
T Consensus 193 s---dgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 S---DGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred C---CCCccccCCceeeccccceEEEEEc
Confidence 1 1222221 23699999988543
No 39
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=95.99 E-value=0.018 Score=64.36 Aligned_cols=103 Identities=30% Similarity=0.464 Sum_probs=65.7
Q ss_pred HHHHHHHHHCCCCEEEEccccCccCCCC-ceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccccCCC
Q 003137 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSP-GKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPG 143 (845)
Q Consensus 65 ~~~l~k~ka~GlN~V~~yv~Wn~hEp~~-G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~ 143 (845)
+|.|+-||+.|+|.||+=| |+ .|.. |..|.+ +..+..+.|+++||+|+|-+- |- -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 6899999999999999977 44 4555 655555 666667777889999999863 21 1222 233
Q ss_pred eee-----ec-CChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccc
Q 003137 144 INF-----RT-ENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYG 191 (845)
Q Consensus 144 ~~~-----R~-~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 191 (845)
-+. +. +-..-.+++..|.+.+++.|++ .|=.+=||||-||..
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEIN 136 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCcccc
Confidence 211 11 2345678899999999999994 455788999999964
No 40
>PLN02998 beta-glucosidase
Probab=95.99 E-value=0.0072 Score=71.15 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCccccc
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~ 140 (845)
..|+++++.||++|+|+-++-|-|.-.+|. .|.+|-+|....+++|+.+.++||..++-- -.=-+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 678899999999999999999999866432 12257999986
Q ss_pred C-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003137 141 I-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (845)
Q Consensus 141 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 169 (845)
. -+-.=|..=..|.++++.-++++..+++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 3 4421122123344444444444444444
No 41
>PLN02814 beta-glucosidase
Probab=95.85 E-value=0.0087 Score=70.59 Aligned_cols=96 Identities=15% Similarity=0.219 Sum_probs=72.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCccccc
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~ 140 (845)
..|+++++.||++|+|+-++-|.|.-.+|. +|.+|-+|....+++|+.+.++||..++-. . =| -+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL---~--H~---dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL---Y--HY---DLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe---c--CC---CCCHHHHH
Confidence 458999999999999999999999999996 688999999999999999999999866542 1 13 47999987
Q ss_pred C-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003137 141 I-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (845)
Q Consensus 141 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 169 (845)
. -+- .++...++-.+|.+.+++++.
T Consensus 149 ~yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 149 EYGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred hcCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 4 442 233333444444444444444
No 42
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.83 E-value=0.026 Score=66.12 Aligned_cols=96 Identities=11% Similarity=0.111 Sum_probs=73.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCccccc
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~ 140 (845)
..|+++++.||++|+|+-++-|.|.-.+|. .|.+|-.|....+++|+.+.++||.-++-. -.=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 457999999999999999999999999996 578899999999999999999999865542 12358999986
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003137 141 IPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (845)
Q Consensus 141 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 169 (845)
.-+- .++...++-.+|.+.+++++.
T Consensus 126 ~GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 126 NGDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5332 344444445555555555554
No 43
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.78 E-value=0.013 Score=68.84 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=72.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccc
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 139 (845)
..|+++++.||++|+|+-++-|.|.-.+|. +|++|=.|....+++|+.+.++||..++-. -.=.+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 458999999999999999999999999997 667888898999999999999999866532 1225899998
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003137 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (845)
Q Consensus 140 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 169 (845)
+. -+-.=|..=..|.++++.-++++..+++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 4421111113344555444444444444
No 44
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.69 E-value=0.034 Score=65.18 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCccccc
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~ 140 (845)
..|+++++.||++|+|+-++-|.|.-.+|. +|.+|=+|....+++|+.+.++||..++-- -.=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTL--------HHFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEec--------cCCCCcHHHHH
Confidence 458999999999999999999999999996 678888899999999999999999966542 12258999986
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003137 141 IPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (845)
Q Consensus 141 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 169 (845)
.-+- .++...++-.+|.+.+++++.
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5442 244444555555555555554
No 45
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.57 E-value=0.015 Score=68.23 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=72.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCC--CceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccc
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 139 (845)
..|+++++.||++|+|+-++-|.|.-.+|. +|++|=.|....+++|+.+.++||..++-. -.=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 458999999999999999999999999997 567888898999999999999999866542 1225899997
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003137 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (845)
Q Consensus 140 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 169 (845)
.. -+-.=|..=..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 64 4431121123344444444444444444
No 46
>PLN02849 beta-glucosidase
Probab=95.56 E-value=0.013 Score=69.04 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=71.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCC-CceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCccccc
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~ 140 (845)
..|+++++.||++|+|+-++-|.|.-.+|. .|.+|=.|....+++|+.+.++||.-++-- -.=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 458999999999999999999999999996 478898899999999999999999966542 12258999986
Q ss_pred C-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003137 141 I-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (845)
Q Consensus 141 ~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 169 (845)
. -+- .++...++-.+|.+.+++++.
T Consensus 151 ~yGGW----~nr~~v~~F~~YA~~~f~~fg 176 (503)
T PLN02849 151 DYGGW----INRRIIKDFTAYADVCFREFG 176 (503)
T ss_pred hcCCc----CCchHHHHHHHHHHHHHHHhc
Confidence 4 442 233333444444444444444
No 47
>PRK09936 hypothetical protein; Provisional
Probab=94.79 E-value=0.11 Score=56.66 Aligned_cols=58 Identities=26% Similarity=0.382 Sum_probs=47.0
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccc-hhHHHHHHHHHHcCCEEEEe
Q 003137 57 PRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN-YDLVKFIKLAKQAGLYVNLR 120 (845)
Q Consensus 57 ~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~-~dl~~fl~~a~~~GL~Vilr 120 (845)
.+++++.|+.+++.+|+.|++|+= |=|..--.. ||.+. -+|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~yG~~----~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRYGDA----DFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeeccCC----CcccchHHHHHHHHHHHHcCCEEEEc
Confidence 468999999999999999999864 456543111 88764 59999999999999999984
No 48
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.43 E-value=0.2 Score=54.51 Aligned_cols=111 Identities=29% Similarity=0.354 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHH---HcCCEEEEecCceeceecCCCCCCcccc
Q 003137 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAK---QAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (845)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~---~~GL~VilrpGPyicaEw~~GG~P~WL~ 139 (845)
.=.|.|+-+|+.|+|-|++-| ||.---..|.=-=.|+.|+.+.|++|+ ..||+|++.+= +-.|..
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwa 131 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWA 131 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhcc
Confidence 346899999999999999865 665433334433356789999998865 47999999851 111211
Q ss_pred cCCCee------eecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccC
Q 003137 140 YIPGIN------FRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGP 192 (845)
Q Consensus 140 ~~p~~~------~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 192 (845)
+|+-+ .--+-..-.+++-.|.+..+..++++ |=-+=||||-||-.+
T Consensus 132 -DPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e------Gi~pdmVQVGNEtn~ 183 (403)
T COG3867 132 -DPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE------GILPDMVQVGNETNG 183 (403)
T ss_pred -ChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCCccceEeccccCC
Confidence 22211 11223455677888899999988854 445679999999754
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.23 E-value=0.25 Score=48.24 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=64.1
Q ss_pred HHHHHHHHCCCCEEEEccc----c-----CccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCc
Q 003137 66 DLIQKAKDGGLDVIQTYVF----W-----NGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPV 136 (845)
Q Consensus 66 ~~l~k~ka~GlN~V~~yv~----W-----n~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~ 136 (845)
+-++.+|++|+|+|.++.= | ..|.+.|+- ..+ -|.++++.|++.||.|+.|...- --|+..---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~D---llge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRD---LLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcC---HHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4467899999999998432 2 345555554 122 57999999999999999997654 33444445699
Q ss_pred ccccCCCee-------------eecCChhhHHHHHHHHHHHHHHH
Q 003137 137 WLKYIPGIN-------------FRTENGPFKAEMHKFTKKIVDMM 168 (845)
Q Consensus 137 WL~~~p~~~-------------~R~~d~~y~~~~~~~~~~l~~~l 168 (845)
|+..+++-+ .-..+.+|++.+.+-+++|+.++
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 998644321 11234578876666666655543
No 50
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=94.04 E-value=0.036 Score=63.44 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=110.2
Q ss_pred EEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccccCcc-CC---CCceeee-ccchhHHHHHHHHHHcC
Q 003137 40 IAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGH-EP---SPGKYYF-EGNYDLVKFIKLAKQAG 114 (845)
Q Consensus 40 ~~idG~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~h-Ep---~~G~~df-~g~~dl~~fl~~a~~~G 114 (845)
|.++++++..++..-.++++--++-+++|+-|+-+|++++++ |.+- |+ ++|.-+- ++..-++.|++.|.+++
T Consensus 4 F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~---fiLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~ 80 (587)
T COG3934 4 FALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRL---FILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLD 80 (587)
T ss_pred EEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEE---EEecCcchhhhhceecccccHHHHHHHhhhcccCc
Confidence 788888888888777778887777888999999999999999 4555 66 3343222 23457999999999999
Q ss_pred CEEEEecCceeceecCCCCCC---ccccc-CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccc
Q 003137 115 LYVNLRIGPYVCAEWNFGGFP---VWLKY-IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEY 190 (845)
Q Consensus 115 L~VilrpGPyicaEw~~GG~P---~WL~~-~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy 190 (845)
|+|+++. |.+-=.+||.- .|--. .|+-.+ .|+.++..-++|...+++-++. ...|.+|-+-||
T Consensus 81 lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk~-------~ptI~gw~l~Ne- 147 (587)
T COG3934 81 LKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYKL-------DPTIAGWALRNE- 147 (587)
T ss_pred ceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhcc-------ChHHHHHHhcCC-
Confidence 9999873 55544567753 34321 233212 2566666677888877775553 347899999999
Q ss_pred cCcccccCCCCHHHHHHHHHHHH
Q 003137 191 GPMEYEIGAPGRSYTRWAAKMAV 213 (845)
Q Consensus 191 g~~~~~~~~~~~~y~~~l~~~~~ 213 (845)
.... -...+..+++|+++|+.
T Consensus 148 -~lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 -PLVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred -cccc-ccCChhHHHHHHHHHHH
Confidence 3221 12357789999999973
No 51
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.41 E-value=0.097 Score=60.56 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=71.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCCCce--eeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccc
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGK--YYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~--~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 139 (845)
..++++++.||+||+|+.++-|.|.-.-|..+. .|=.|-...+++++.|.++||.-++-. -.=-+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL--------~Hfd~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL--------YHFDLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCcHHHh
Confidence 457899999999999999999999999996554 888899999999999999999966542 1224799998
Q ss_pred cC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003137 140 YI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (845)
Q Consensus 140 ~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 169 (845)
+. -|= .+..-.++-.+|.+.+++++.
T Consensus 131 ~~ygGW----~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 131 KPYGGW----ENRETVDAFARYAATVFERFG 157 (460)
T ss_pred hccCCc----cCHHHHHHHHHHHHHHHHHhc
Confidence 75 342 223333444555555555555
No 52
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.63 E-value=2.1 Score=52.19 Aligned_cols=52 Identities=27% Similarity=0.250 Sum_probs=38.6
Q ss_pred HHHHHCCCCEEEE-ccccCccCCCCcee----------eeccchhHHHHHHHHHHcCCEEEEec
Q 003137 69 QKAKDGGLDVIQT-YVFWNGHEPSPGKY----------YFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 69 ~k~ka~GlN~V~~-yv~Wn~hEp~~G~~----------df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
.-+|++|+|+|++ +|+..-.... --| .|.+..||.+||+.|+++||.|||..
T Consensus 164 dyl~~LGvt~i~L~Pi~e~~~~~~-wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 164 PYVKELGFTHIELLPVAEHPFDGS-WGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHcCCCEEEECCcccCCCCCC-CCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6779999999998 7775321110 012 34556799999999999999999984
No 53
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=91.50 E-value=2 Score=50.47 Aligned_cols=150 Identities=18% Similarity=0.265 Sum_probs=96.6
Q ss_pred cCcEEECCeEeEEEEEEeeCC-----CCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHH
Q 003137 37 SKAIAINGKRRILISGSIHYP-----RSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAK 111 (845)
Q Consensus 37 ~~~~~idG~~~~~~sG~~Hy~-----r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~ 111 (845)
+..|.|++.|.++.+++--+. |..-+.-+-.|+-++++|+|++++ |.. |.| .-+.|-++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----GvY------Esd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----GVY------ESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----ccc------cchhHHHHhh
Confidence 467899999999988876552 234445566799999999999999 765 344 3689999999
Q ss_pred HcCCEEEEecCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEec--cccc
Q 003137 112 QAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ--IENE 189 (845)
Q Consensus 112 ~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q--iENE 189 (845)
+.||.|--.. =+.||- =..|..|+..++.=++.=+.+|+.|| .||.+- =|||
T Consensus 393 ~lGilVWQD~-MFACAl------------------YPt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACAL------------------YPTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhc------------------ccCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccH
Confidence 9999776332 123332 23467899888887777777888665 566655 3555
Q ss_pred ccCcccccC-------CCCHHHH----HHHHHHHHhcCCCcceeecCC
Q 003137 190 YGPMEYEIG-------APGRSYT----RWAAKMAVGLGTGVPWIMCKQ 226 (845)
Q Consensus 190 yg~~~~~~~-------~~~~~y~----~~l~~~~~~~g~~vp~~~~~~ 226 (845)
=.-...-|+ ..-++|. +-++++...-.-..|++++..
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 321100011 1123333 335555555455678888653
No 54
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=90.89 E-value=31 Score=39.79 Aligned_cols=244 Identities=12% Similarity=0.149 Sum_probs=122.5
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEE-------ccccCccCCCCceeeec-cchhHHHHHHHHHHcCCEEEEecCceec
Q 003137 55 HYPRSSPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPSPGKYYFE-GNYDLVKFIKLAKQAGLYVNLRIGPYVC 126 (845)
Q Consensus 55 Hy~r~~~~~W~~~l~k~ka~GlN~V~~-------yv~Wn~hEp~~G~~df~-g~~dl~~fl~~a~~~GL~VilrpGPyic 126 (845)
.+.+..++.| .+.+|++|+.-|=. +-.|.-....-..-+-. ++--|.++.+.|+++||++-+ |..
T Consensus 77 ~p~~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~S 149 (384)
T smart00812 77 TAEKFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YHS 149 (384)
T ss_pred CchhCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----EcC
Confidence 3344566666 56788899985532 12244332211111111 223467888999999998766 443
Q ss_pred e-ecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccCcccccCCCCHHHH
Q 003137 127 A-EWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYT 205 (845)
Q Consensus 127 a-Ew~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~ 205 (845)
. +|.. |.|....+....+.+.+.|.++++.|+.+|.+.+.++ ||-++|- +-..+.. ...--.
T Consensus 150 ~~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~~------~~~~~~ 212 (384)
T smart00812 150 LFDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEAP------DDYWRS 212 (384)
T ss_pred HHHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCCc------cchhcH
Confidence 3 6654 5443221111123456788888888888888888743 2334431 1111110 111114
Q ss_pred HHHHHHHHhcCCCc-ceeecCCCCCCCccccCCCCcc--c-ccCCCC-CCCCCcee-eecccccccccCC-CCCCCChHH
Q 003137 206 RWAAKMAVGLGTGV-PWIMCKQDDAPDPLINTCNGFY--C-DYFSPN-KAYKPKMW-TEAWTGWYTEFGG-PVPHRPVED 278 (845)
Q Consensus 206 ~~l~~~~~~~g~~v-p~~~~~~~~~~~~~~~~~ng~~--~-~~~~~~-~p~~P~~~-~E~~~GWf~~WG~-~~~~~~~~~ 278 (845)
+.|.+++++..-+. -.+.++... ... .. .|.. + +...+. ....|.-. +=.-.+|+=+-++ ....+++++
T Consensus 213 ~~l~~~~~~~qP~~~~vvvn~R~~-~~~--~~-~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~ 288 (384)
T smart00812 213 KEFLAWLYNLSPVKDTVVVNDRWG-GTG--CK-HGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKE 288 (384)
T ss_pred HHHHHHHHHhCCCCceEEEEcccc-ccC--CC-CCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHH
Confidence 55666666654432 012222210 000 00 0110 1 111110 01112111 1111244433333 233578999
Q ss_pred HHHHHHHHHHhCCee-eeeeeeecCCCCCCCCCCCCccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHhhcCCc
Q 003137 279 LAFSVAKFIQKGGSF-INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPAL 352 (845)
Q Consensus 279 ~~~~~~~~l~~g~s~-~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~~~~~~~~l 352 (845)
+...+.+..++|+++ +|. +-+.+|.+-.+.-..|+++.+.++.....+
T Consensus 289 li~~l~~~Vsk~GnlLLNV--------------------------gP~~dG~ip~~~~~~L~~iG~Wl~~ngeaI 337 (384)
T smart00812 289 LIRDLVDIVSKGGNLLLNV--------------------------GPKADGTIPEEEEERLLEIGKWLKVNGEAI 337 (384)
T ss_pred HHHHHhhhcCCCceEEEcc--------------------------CCCCCCCCCHHHHHHHHHHHHHHHhCCcee
Confidence 999999999999884 332 234577776666778999999888765543
No 55
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=90.78 E-value=3.7 Score=44.49 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=75.8
Q ss_pred cccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEE-EecCceeceecCCCCCCcccc
Q 003137 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVWLK 139 (845)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi-lrpGPyicaEw~~GG~P~WL~ 139 (845)
...|++.|+.++++|++.|++-+ +.. +..+...+++ ..++.++.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 46699999999999999999943 222 2223445554 3578999999999999975 44321 01111
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccCcccccCC---CCHHHHHHHHHHHHhcC
Q 003137 140 YIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGA---PGRSYTRWAAKMAVGLG 216 (845)
Q Consensus 140 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 216 (845)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+- ..++.. .....+ .-.+.++.|.+.+++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~~-~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVYY-EEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Cccccc-CcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 122355556666667777777776 33 55666542 111100 000000 11245556666777777
Q ss_pred CCc
Q 003137 217 TGV 219 (845)
Q Consensus 217 ~~v 219 (845)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 765
No 56
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=90.74 E-value=1.1 Score=49.99 Aligned_cols=116 Identities=21% Similarity=0.233 Sum_probs=71.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccC-------ccCC-------CCce-eeeccchhHHHHHHHHHHcCCEEEEecCce
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWN-------GHEP-------SPGK-YYFEGNYDLVKFIKLAKQAGLYVNLRIGPY 124 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn-------~hEp-------~~G~-~df~g~~dl~~fl~~a~~~GL~VilrpGPy 124 (845)
.++.-++.|++++++|||+|-.-|-+. -.+| .+|. -.|+ -|..+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 677788999999999999997544432 1222 1121 0133 79999999999999999765 11
Q ss_pred eceecCC----CCCCcccc-cCCCeeeec----C-----ChhhHHHHHHHHHHHHHHHH-hcccccccCCceEEecccc
Q 003137 125 VCAEWNF----GGFPVWLK-YIPGINFRT----E-----NGPFKAEMHKFTKKIVDMMK-AERLFESQGGPIILSQIEN 188 (845)
Q Consensus 125 icaEw~~----GG~P~WL~-~~p~~~~R~----~-----d~~y~~~~~~~~~~l~~~l~-~~~~~~~~gGpII~~QiEN 188 (845)
-...-.. -.-|.|+. +.++..... . || -..+|+.|+..++..|. ++ +|=++|++-
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP-~~PeVr~~i~~~v~Eiv~~Y--------dvDGIhlDd 162 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNP-GHPEVRDYIIDIVKEIVKNY--------DVDGIHLDD 162 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECC-CCHHHHHHHHHHHHHHHhcC--------CCCeEEecc
Confidence 1110011 12478876 355533322 1 22 23678888877776654 33 467788873
No 57
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.12 E-value=3.3 Score=47.83 Aligned_cols=122 Identities=21% Similarity=0.291 Sum_probs=79.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcc-------------ccCccCCCCceee-eccchhHHHHHHHHHHcCCEEEEecCcee
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYV-------------FWNGHEPSPGKYY-FEGNYDLVKFIKLAKQAGLYVNLRIGPYV 125 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv-------------~Wn~hEp~~G~~d-f~g~~dl~~fl~~a~~~GL~VilrpGPyi 125 (845)
.+.+-.+.|.+++++|+|||-.-| +|..-- ||.+- =.|..-|...|++|++.||.|+-+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 677788999999999999996322 244332 44331 12334788999999999999999988888
Q ss_pred ceecCCCC---CCcccccC-CCee-eecCC-------hhhHHHHHHHHHHHH-HHHHhcccccccCCceEEeccccccc
Q 003137 126 CAEWNFGG---FPVWLKYI-PGIN-FRTEN-------GPFKAEMHKFTKKIV-DMMKAERLFESQGGPIILSQIENEYG 191 (845)
Q Consensus 126 caEw~~GG---~P~WL~~~-p~~~-~R~~d-------~~y~~~~~~~~~~l~-~~l~~~~~~~~~gGpII~~QiENEyg 191 (845)
-|--..-. -|.|+... |+.. .|... .+..-+++.|+..++ +.++++ .|=++|++-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 66422111 36777763 5433 33332 134567888877766 455533 577788876655
No 58
>smart00642 Aamy Alpha-amylase domain.
Probab=89.91 E-value=0.83 Score=46.22 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHCCCCEEEEccccCccC-------CCCcee-----eeccchhHHHHHHHHHHcCCEEEEecCceecee
Q 003137 63 MWPDLIQKAKDGGLDVIQTYVFWNGHE-------PSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (845)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~~yv~Wn~hE-------p~~G~~-----df~g~~dl~~fl~~a~~~GL~VilrpGPyicaE 128 (845)
.+.+.|..+|++|+|+|.+-=++..-+ -.+..| .|....++.++++.|+++||.||+..=|-=++.
T Consensus 20 gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 20 GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 355667779999999999743322221 112222 355668999999999999999999864444433
No 59
>PRK14706 glycogen branching enzyme; Provisional
Probab=87.91 E-value=6.1 Score=48.42 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=36.2
Q ss_pred HHHHHHCCCCEEEE-ccc-------cCccCC--CCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003137 68 IQKAKDGGLDVIQT-YVF-------WNGHEP--SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 68 l~k~ka~GlN~V~~-yv~-------Wn~hEp--~~G~~df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
+.-+|++|+|+|+. .|. |...-. -.=.=.|....||.+|++.|+++||.|||-.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999995 332 322100 0000113445799999999999999999874
No 60
>PRK05402 glycogen branching enzyme; Provisional
Probab=87.69 E-value=6.5 Score=48.93 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=37.4
Q ss_pred HHHHHHCCCCEEEE-ccccC----ccCCCCcee-----eeccchhHHHHHHHHHHcCCEEEEec
Q 003137 68 IQKAKDGGLDVIQT-YVFWN----GHEPSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 68 l~k~ka~GlN~V~~-yv~Wn----~hEp~~G~~-----df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
|.-+|++|+|+|+. +|+=. .|--.+.-| .|....||.+|++.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36679999999996 56411 111111111 24556799999999999999999984
No 61
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=86.06 E-value=2.1 Score=50.64 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=43.7
Q ss_pred EEEeeCCCCCcccHHHHHHHHH-HCCCCEEEEccccCcc--------C-CCCc--eeeeccchhHHHHHHHHHHcCCEEE
Q 003137 51 SGSIHYPRSSPEMWPDLIQKAK-DGGLDVIQTYVFWNGH--------E-PSPG--KYYFEGNYDLVKFIKLAKQAGLYVN 118 (845)
Q Consensus 51 sG~~Hy~r~~~~~W~~~l~k~k-a~GlN~V~~yv~Wn~h--------E-p~~G--~~df~g~~dl~~fl~~a~~~GL~Vi 118 (845)
-|+-|.....++.|+..|+.++ +.|+.-|++ |++. | ..+| .|||+ .||.+++...+.||+-.
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~ 101 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPF 101 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEE
Confidence 4455555567888999999997 779999998 4433 1 1233 39999 89999999999999987
Q ss_pred EecC
Q 003137 119 LRIG 122 (845)
Q Consensus 119 lrpG 122 (845)
+..|
T Consensus 102 vel~ 105 (486)
T PF01229_consen 102 VELG 105 (486)
T ss_dssp EEE-
T ss_pred EEEE
Confidence 7654
No 62
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=85.74 E-value=5.4 Score=43.02 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEE-EecCceeceecCCCCCCccccc
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVWLKY 140 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi-lrpGPyicaEw~~GG~P~WL~~ 140 (845)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++.++.++++++||.|. +.++ +.-.+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~----------~~~~~--- 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLS----------GHRRF--- 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecc----------cccCc---
Confidence 46999999999999999999532 2222 11122333 3479999999999999876 3222 11001
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccCcc--cccCCCCHHHHHHHHHHHHhcCCC
Q 003137 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPME--YEIGAPGRSYTRWAAKMAVGLGTG 218 (845)
Q Consensus 141 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~ 218 (845)
.+.+.|+..+++..+.++++++..+ -+ |.++|.+---..+.... ..+ ..-.+.++.+.+++++.|+.
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~ 148 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETR-QRFIEGLAWAVEQAAAAQVM 148 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHH-HHHHHHHHHHHHHHHHhCCE
Confidence 1223456655666666777776666 22 44565542100000000 000 01234667777888888876
Q ss_pred c
Q 003137 219 V 219 (845)
Q Consensus 219 v 219 (845)
+
T Consensus 149 l 149 (284)
T PRK13210 149 L 149 (284)
T ss_pred E
Confidence 5
No 63
>PRK12568 glycogen branching enzyme; Provisional
Probab=85.44 E-value=17 Score=45.06 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=39.6
Q ss_pred HHHHHHHCCCCEEEE-ccc-------cCccCCCCcee----eeccchhHHHHHHHHHHcCCEEEEecCc
Q 003137 67 LIQKAKDGGLDVIQT-YVF-------WNGHEPSPGKY----YFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (845)
Q Consensus 67 ~l~k~ka~GlN~V~~-yv~-------Wn~hEp~~G~~----df~g~~dl~~fl~~a~~~GL~VilrpGP 123 (845)
.|.-+|++|+|+|+. +|+ |...- -|-| .|....++.+|++.|+++||.|||-.=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 467789999999996 453 43210 0111 3455679999999999999999998544
No 64
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=84.65 E-value=1.5 Score=51.58 Aligned_cols=68 Identities=10% Similarity=0.199 Sum_probs=46.9
Q ss_pred eeCCCCC----cccHH---HHHHHHHHCCCCEEEE-ccccCc-----cCCCCc-ee-------------eeccchhHHHH
Q 003137 54 IHYPRSS----PEMWP---DLIQKAKDGGLDVIQT-YVFWNG-----HEPSPG-KY-------------YFEGNYDLVKF 106 (845)
Q Consensus 54 ~Hy~r~~----~~~W~---~~l~k~ka~GlN~V~~-yv~Wn~-----hEp~~G-~~-------------df~g~~dl~~f 106 (845)
+|.|.++ .+.|. +.|.-++++|+++|-+ +++-+. |--.+- -| .|....||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 4555553 34575 5678889999999987 465442 222221 12 23456799999
Q ss_pred HHHHHHcCCEEEEec
Q 003137 107 IKLAKQAGLYVNLRI 121 (845)
Q Consensus 107 l~~a~~~GL~Vilrp 121 (845)
++.|++.||+||+-.
T Consensus 87 i~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 87 IDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHCCCEEEEEE
Confidence 999999999999985
No 65
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=82.62 E-value=1.7 Score=49.46 Aligned_cols=72 Identities=29% Similarity=0.263 Sum_probs=47.7
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceece
Q 003137 50 ISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (845)
Q Consensus 50 ~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyica 127 (845)
+|=++++...+.+.....|++|+++|+. .||=++|.|+...=+. ...+..++++|+++||.|++.+.|=+..
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~----~iFTSL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFK----RIFTSLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEE----EEEEEE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCC----EEECCCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 4557777777889999999999999994 5555899998543222 1379999999999999999998775543
No 66
>PRK01060 endonuclease IV; Provisional
Probab=81.83 E-value=23 Score=38.21 Aligned_cols=93 Identities=14% Similarity=0.212 Sum_probs=60.1
Q ss_pred HHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEE---EEecCceeceecCCCCCCccccc
Q 003137 64 WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV---NLRIGPYVCAEWNFGGFPVWLKY 140 (845)
Q Consensus 64 W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~V---ilrpGPyicaEw~~GG~P~WL~~ 140 (845)
+++.+++++++|++.|++.+. +-|.-.++.++- .++.++-++++++||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEE---LNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCH---HHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 889999999999999999543 112222222322 26888999999999973 22 23331
Q ss_pred CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEec
Q 003137 141 IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ 185 (845)
Q Consensus 141 ~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 185 (845)
+.+-+.|+..+++..+.+++.++..+ .+ |-++|.+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12234567777777777877777766 33 44555553
No 67
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=81.45 E-value=1.7 Score=46.72 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCEEEEccccCccCCCCc--eee-------eccchhHHHHHHHHHHcCCEEEEec
Q 003137 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPG--KYY-------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 65 ~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G--~~d-------f~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
.+.|.-+|++|+|+|.+-=++...+..-| .-| |....+|.++++.|+++||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 35688999999999997533332211111 112 3345799999999999999999874
No 68
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=80.21 E-value=3.1 Score=51.64 Aligned_cols=61 Identities=21% Similarity=0.195 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHHCCCCEEEE-ccc-------cCccCC---CCceeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 003137 62 EMWPDLIQKAKDGGLDVIQT-YVF-------WNGHEP---SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~-yv~-------Wn~hEp---~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGP 123 (845)
+.|++.|..+|++|+|+|++ .|+ |..+-. .+ .-.|....+|.+||+.|+++||.|||-.=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 34788899999999999996 332 433211 01 113555679999999999999999988533
No 69
>PRK14705 glycogen branching enzyme; Provisional
Probab=79.85 E-value=33 Score=45.04 Aligned_cols=55 Identities=20% Similarity=0.136 Sum_probs=38.6
Q ss_pred HHHHHHHCCCCEEEE-ccc-------cCccC--CCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003137 67 LIQKAKDGGLDVIQT-YVF-------WNGHE--PSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 67 ~l~k~ka~GlN~V~~-yv~-------Wn~hE--p~~G~~df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
.|.-+|++|+|+|+. +|+ |.+.- ...=.=.|....||.+||+.|+++||.|||-.
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999996 453 43210 00001124556799999999999999999883
No 70
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.37 E-value=12 Score=40.55 Aligned_cols=125 Identities=16% Similarity=0.260 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEE-EecCceeceecCCCCCCcccccC
Q 003137 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVWLKYI 141 (845)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi-lrpGPyicaEw~~GG~P~WL~~~ 141 (845)
.|++.++.++++|+..|+..+. ..++ ....++++ ..+++++.++++++||.|. +.++.. ..++
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~~------ 85 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRFP------ 85 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------cccC------
Confidence 5999999999999999999532 1111 01122333 2468899999999999875 332210 0010
Q ss_pred CCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccCcccccCC-------CCHHHHHHHHHHHHh
Q 003137 142 PGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGA-------PGRSYTRWAAKMAVG 214 (845)
Q Consensus 142 p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~-------~~~~y~~~l~~~~~~ 214 (845)
+-+.|+.-++...+.+++.++..+ .+ |.++|.+. |. ...++. .-.+.++.|.+++++
T Consensus 86 ----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~-~~~~~~~~~~~~~~~~~~l~~l~~~A~~ 149 (283)
T PRK13209 86 ----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GY-DVYYEQANNETRRRFIDGLKESVELASR 149 (283)
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Cc-cccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 113455556666677777777777 32 56666542 11 000111 113456677777777
Q ss_pred cCCCc
Q 003137 215 LGTGV 219 (845)
Q Consensus 215 ~g~~v 219 (845)
.|+.+
T Consensus 150 ~GV~i 154 (283)
T PRK13209 150 ASVTL 154 (283)
T ss_pred hCCEE
Confidence 78755
No 71
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=78.45 E-value=7.8 Score=50.79 Aligned_cols=113 Identities=16% Similarity=0.262 Sum_probs=69.2
Q ss_pred EEECCeEeEEEEE---EeeCCCC--CcccHHHHHHHHHHCCCCEEEE-ccc-cCc---cCCCCceee----e----ccch
Q 003137 40 IAINGKRRILISG---SIHYPRS--SPEMWPDLIQKAKDGGLDVIQT-YVF-WNG---HEPSPGKYY----F----EGNY 101 (845)
Q Consensus 40 ~~idG~~~~~~sG---~~Hy~r~--~~~~W~~~l~k~ka~GlN~V~~-yv~-Wn~---hEp~~G~~d----f----~g~~ 101 (845)
+.|+|++++.+.+ .-..+++ +-+.|++.|+.+|++|.|+|.. +++ =.. .=...+++. | .+..
T Consensus 105 L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~ 184 (1464)
T TIGR01531 105 LYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKN 184 (1464)
T ss_pred eEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHH
Confidence 5556633333322 2234554 5577999999999999999985 455 111 001122222 3 2567
Q ss_pred hHHHHHHHHHHc-CCEEEEecCceeceecCCCCC-CcccccCCCeeeecCChhhHHHHH
Q 003137 102 DLVKFIKLAKQA-GLYVNLRIGPYVCAEWNFGGF-PVWLKYIPGINFRTENGPFKAEMH 158 (845)
Q Consensus 102 dl~~fl~~a~~~-GL~VilrpGPyicaEw~~GG~-P~WL~~~p~~~~R~~d~~y~~~~~ 158 (845)
|+.++++.+++. ||++|+.. + |+.-+- =.||.++|+.-.-..+.+||+++-
T Consensus 185 d~~~lV~~~h~~~Gm~~ilDv---V---~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~A~ 237 (1464)
T TIGR01531 185 DVQALVEKLHRDWNVLSITDI---V---FNHTANNSPWLLEHPEAAYNCITSPHLRPAI 237 (1464)
T ss_pred HHHHHHHHHHHhcCCEEEEEe---e---ecccccCCHHHHhChHhhcCCCCCchhhhHH
Confidence 899999999996 99999874 1 333333 358887777544444555655433
No 72
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=77.83 E-value=4 Score=49.03 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCCEEEE-ccc-------cCcc-----CCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003137 66 DLIQKAKDGGLDVIQT-YVF-------WNGH-----EPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 66 ~~l~k~ka~GlN~V~~-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
++|.-+|++|+|+|.+ +|+ |.+. .+.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688999999999996 453 3221 1111 24556799999999999999999984
No 73
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=77.67 E-value=18 Score=39.09 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHc-CCEEEE
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQA-GLYVNL 119 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~-GL~Vil 119 (845)
..|++.|+.+|++|++.|++-+....-... ......+++++.++++++ ++.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 679999999999999999987643211111 111346899999999999 666554
No 74
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=77.64 E-value=9.2 Score=38.55 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=71.9
Q ss_pred HHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccccCCCeeee
Q 003137 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFR 147 (845)
Q Consensus 68 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R 147 (845)
|+.++++|+..|+....+......+ ...++++.++++++||.+..--.+ . .+ .. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~-~--~~---~~-------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPP-T--NF---WS-------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEE-E--SS---SC-------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecc-c--cc---cc-------cccccc
Confidence 6789999999999976543322211 347999999999999996632111 1 00 00 100123
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccc--ccccCcc--cccCCCCHHHHHHHHHHHHhcCCCc
Q 003137 148 TENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIE--NEYGPME--YEIGAPGRSYTRWAAKMAVGLGTGV 219 (845)
Q Consensus 148 ~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE--NEyg~~~--~~~~~~~~~y~~~l~~~~~~~g~~v 219 (845)
+..++ ++...+.+.+.++..+ .+ |...|.+..- +...... ..+ ..-.+.++.|.+.+++.|+.+
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~l~~l~~~a~~~gv~i 128 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENW-ERLAENLRELAEIAEEYGVRI 128 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHH-HHHHHHHHHHHHHHHHHTSEE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHH-HHHHHHHHHHHhhhhhhcceE
Confidence 34444 7777778888888877 33 5566776643 1111110 000 123346677777777778664
No 75
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=74.96 E-value=38 Score=36.20 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=37.6
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 003137 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (845)
Q Consensus 54 ~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 119 (845)
+.|-+.+ ++++|++++++|++.|++. . + + ..+++++.++++++||.+..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~---~---~----~----~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFM---F---P----Y----DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEc---C---C----C----CCCHHHHHHHHHHcCCcEEE
Confidence 3444444 7889999999999999983 2 1 1 13699999999999999864
No 76
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=74.06 E-value=42 Score=38.64 Aligned_cols=91 Identities=13% Similarity=0.170 Sum_probs=53.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc----cccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE-ecCceeceecCCCCC
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTY----VFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL-RIGPYVCAEWNFGGF 134 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~y----v~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil-rpGPyicaEw~~GG~ 134 (845)
++....+++++++++|+..|+.. ++|..-+.+ -..++.++-++++++||.|.. -++-+.+
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~v~~nl~~~-------- 94 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPMVTTNLFSH-------- 94 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEEeeccccCC--------
Confidence 44567799999999999999963 222111000 023578899999999999763 3321111
Q ss_pred CcccccCCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003137 135 PVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (845)
Q Consensus 135 P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 169 (845)
|.|.. + .+=+.|+..+++.-+.+++.++.-+
T Consensus 95 ~~~~~---g-~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 95 PVFKD---G-GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred ccccC---C-CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11211 1 1334567666665555666666555
No 77
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=73.88 E-value=3.5 Score=41.90 Aligned_cols=63 Identities=27% Similarity=0.233 Sum_probs=29.1
Q ss_pred CCceEEEEECCeeccccccccccCCCCCcccccCccccccccCCCCCCceeEEecCCCccccCCcEEEEEEecC
Q 003137 646 SMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWG 719 (845)
Q Consensus 646 g~gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~iG~~~~~~~~t~cg~PQqtlY~VP~~~Lk~g~N~IvvfE~~g 719 (845)
.-++=+|.||| ..+..+... .| .++|.++++ +-+|+.+.--|.||+..|++|+|+|.|--..|
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~--~~-~d~~~~r~g-------~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAP--FG-NDNAIYRSG-------IHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE--------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccc--cC-CCCceeeCc-------eecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 34677999999 777766311 11 123333331 22344555567899999999999997744334
No 78
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=73.12 E-value=11 Score=42.29 Aligned_cols=112 Identities=20% Similarity=0.260 Sum_probs=69.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-------cccCccCCCCceeeec-c-chhHHHHHHHHHHcCCEEEEecCceeceecC
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTY-------VFWNGHEPSPGKYYFE-G-NYDLVKFIKLAKQAGLYVNLRIGPYVCAEWN 130 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~y-------v~Wn~hEp~~G~~df~-g-~~dl~~fl~~a~~~GL~VilrpGPyicaEw~ 130 (845)
.++.-+..|+.+++.|+|+|-+- |.+....|..-+..-. . ..|+.++++.++++||++|.|+=-+--. .-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~-~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDP-VL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecCh-HH
Confidence 34567889999999999998753 3344333322222111 1 2699999999999999999996221100 00
Q ss_pred CCCCCcccccC-CCeeeecCC-----hhhHHHHHHHHHHHHHHHHhcc
Q 003137 131 FGGFPVWLKYI-PGINFRTEN-----GPFKAEMHKFTKKIVDMMKAER 172 (845)
Q Consensus 131 ~GG~P~WL~~~-p~~~~R~~d-----~~y~~~~~~~~~~l~~~l~~~~ 172 (845)
..--|.|-.+. .+-..|..+ .+|.+++.+|.-.|++.+++..
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 01135555432 121122211 2588999999999999998553
No 79
>PLN02960 alpha-amylase
Probab=72.87 E-value=7.2 Score=48.96 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCEEEE-ccc-------cCccCC--CCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003137 65 PDLIQKAKDGGLDVIQT-YVF-------WNGHEP--SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 65 ~~~l~k~ka~GlN~V~~-yv~-------Wn~hEp--~~G~~df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
++.|.-+|++|+|+|++ .|+ |.+.-. -.=.-.|....+|.+||+.|+++||.|||-.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34689999999999996 454 432110 0001124456799999999999999999984
No 80
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=72.78 E-value=40 Score=36.19 Aligned_cols=131 Identities=17% Similarity=0.148 Sum_probs=69.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccccC
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYI 141 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~ 141 (845)
..|++.|+.++++|++.|++..-. .|+-.+ +++ ..+++++-++++++||.|.. .+|. .+++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s-~~~~------~~~~~~~~~-- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIG-YTPE------TNGYPYNMM-- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEE-ecCc------ccCcCcccc--
Confidence 359999999999999999983210 111111 121 24688899999999999763 2220 123433322
Q ss_pred CCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccc-cc-CcccccCCCCHHHHHHHHHHHHhcCCCc
Q 003137 142 PGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENE-YG-PMEYEIGAPGRSYTRWAAKMAVGLGTGV 219 (845)
Q Consensus 142 p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE-yg-~~~~~~~~~~~~y~~~l~~~~~~~g~~v 219 (845)
..++.-+++..+.+++.++.-+ .+ |.+.|.+-.-.. +. .....+. .-.+.++.|.+.+++.|+.+
T Consensus 79 ------~~~~~~r~~~~~~~~~~i~~a~--~l----Ga~~i~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~a~~~gv~l 145 (275)
T PRK09856 79 ------LGDEHMRRESLDMIKLAMDMAK--EM----NAGYTLISAAHAGYLTPPNVIWG-RLAENLSELCEYAENIGMDL 145 (275)
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEEcCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHcCCEE
Confidence 1234444444455555555555 22 445554421111 00 0000000 22345677777787777654
No 81
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=72.18 E-value=56 Score=35.12 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEccc
Q 003137 61 PEMWPDLIQKAKDGGLDVIQTYVF 84 (845)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~~yv~ 84 (845)
.-.|+++|.-+|++||+.|+.-|-
T Consensus 17 ~~sW~erl~~AK~~GFDFvEmSvD 40 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEMSVD 40 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEEecc
Confidence 456999999999999999998764
No 82
>PRK10785 maltodextrin glucosidase; Provisional
Probab=72.04 E-value=6.9 Score=47.59 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=41.3
Q ss_pred HHHHHHHHHCCCCEEEE-ccccC--ccCCCCcee-----eeccchhHHHHHHHHHHcCCEEEEec
Q 003137 65 PDLIQKAKDGGLDVIQT-YVFWN--GHEPSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 65 ~~~l~k~ka~GlN~V~~-yv~Wn--~hEp~~G~~-----df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
.+.|.-+|++|+|+|-+ +||=+ .|--...-| .|.+..||.++++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45788999999999996 56633 121111111 24556799999999999999999874
No 83
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=71.47 E-value=7.4 Score=47.28 Aligned_cols=56 Identities=27% Similarity=0.307 Sum_probs=42.0
Q ss_pred cccHHHHHHHHHHCCCCEEEE-ccc-------cCccCCCCcee------eeccchhHHHHHHHHHHcCCEEEEe
Q 003137 61 PEMWPDLIQKAKDGGLDVIQT-YVF-------WNGHEPSPGKY------YFEGNYDLVKFIKLAKQAGLYVNLR 120 (845)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~~-yv~-------Wn~hEp~~G~~------df~g~~dl~~fl~~a~~~GL~Vilr 120 (845)
.+.=.+.|.-+|+||+++||. .|. |.+ .|.. .|....||.+||+.|+++||-|||.
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGY----q~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGY----QGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCC----CcceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 344466899999999999996 332 554 1222 2344579999999999999999997
No 84
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=71.43 E-value=64 Score=34.23 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 003137 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (845)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 119 (845)
.+++.+++++++|++.|+...++ + .++.++.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----------~----~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----------D----WDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----------c----CCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999984322 1 2588899999999999874
No 85
>PRK12313 glycogen branching enzyme; Provisional
Probab=71.37 E-value=7.7 Score=47.47 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=38.0
Q ss_pred HHHHHHCCCCEEEE-ccc-------cCccCC--CCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003137 68 IQKAKDGGLDVIQT-YVF-------WNGHEP--SPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 68 l~k~ka~GlN~V~~-yv~-------Wn~hEp--~~G~~df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
|.-+|++|+|+|+. +|+ |...-. ..=.-.|.+..||.+||+.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999995 553 221100 0000135566899999999999999999984
No 86
>PRK09989 hypothetical protein; Provisional
Probab=71.37 E-value=38 Score=36.20 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 003137 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (845)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 119 (845)
-.+++|++++++|++.|++..+|. + +.+++.++.+++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~----------~----~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD----------Y----STLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc----------C----CHHHHHHHHHHcCCcEEE
Confidence 478999999999999999944332 2 367788889999999774
No 87
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=71.29 E-value=8.1 Score=46.50 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=41.1
Q ss_pred HHHHHHHHHHCCCCEEEE-ccccCccCCC-Cceee----------eccchhHHHHHHHHHHcCCEEEEec
Q 003137 64 WPDLIQKAKDGGLDVIQT-YVFWNGHEPS-PGKYY----------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 64 W~~~l~k~ka~GlN~V~~-yv~Wn~hEp~-~G~~d----------f~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
+.++|.-+|++|+++|-+ +|+-. |. ...|| |....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 557899999999999987 45522 11 11222 4456799999999999999999874
No 88
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=71.25 E-value=33 Score=39.70 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=59.2
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCC----ceeeeccc---hhHHHHHHHHHHcCCEEEEecCceece
Q 003137 55 HYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP----GKYYFEGN---YDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (845)
Q Consensus 55 Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~----G~~df~g~---~dl~~fl~~a~~~GL~VilrpGPyica 127 (845)
+|+.+..+.-.+.+++++++|++.+-+---|....... |.|.-+-. .-|..+++.+++.||+.=|+..|-+.+
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 46777888888899999999999888777787542222 43332211 239999999999999999998887654
Q ss_pred ec--CCCCCCcccccCCC
Q 003137 128 EW--NFGGFPVWLKYIPG 143 (845)
Q Consensus 128 Ew--~~GG~P~WL~~~p~ 143 (845)
.- -+-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 21 12347999987654
No 89
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=70.96 E-value=39 Score=38.17 Aligned_cols=136 Identities=17% Similarity=0.237 Sum_probs=87.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHH---HcCCEEEEecCceeceecCCCCC-C
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAK---QAGLYVNLRIGPYVCAEWNFGGF-P 135 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~---~~GL~VilrpGPyicaEw~~GG~-P 135 (845)
.++..+.-++.+|+.||+.--.|-.|. .|.+-|++-++..- +-+|...|. |.+.-- =
T Consensus 56 ~p~v~~~Q~~lA~~~GI~gF~~~~Ywf-----------~gk~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w~~ 116 (345)
T PF14307_consen 56 DPEVMEKQAELAKEYGIDGFCFYHYWF-----------NGKRLLEKPLENLLASKEPDFPFCLC--------WANENWTR 116 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeeec-----------CCchHHHHHHHHHHhcCCCCCcEEEE--------ECCChhhh
Confidence 567788889999999999998888774 46667777776553 345555554 333211 1
Q ss_pred cccccCCCeeeecCChhhH--HHHHHHHHHHHHHHHhcccccccCCceEEecccccccCcccccCCCCHHHHHHHHHHHH
Q 003137 136 VWLKYIPGINFRTENGPFK--AEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAV 213 (845)
Q Consensus 136 ~WL~~~p~~~~R~~d~~y~--~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~ 213 (845)
.|-.....+.+- ..|. +..++.++.|++.+++..++--+|-||+++=--.+. +.-+++++.+++.++
T Consensus 117 ~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 117 RWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAK 185 (345)
T ss_pred ccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHH
Confidence 222222222221 1222 224677788888888766666688899997322111 256789999999999
Q ss_pred hcCCCcceeecC
Q 003137 214 GLGTGVPWIMCK 225 (845)
Q Consensus 214 ~~g~~vp~~~~~ 225 (845)
++|+..+.+...
T Consensus 186 ~~G~~giyii~~ 197 (345)
T PF14307_consen 186 EAGLPGIYIIAV 197 (345)
T ss_pred HcCCCceEEEEE
Confidence 999987655433
No 90
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=70.33 E-value=7 Score=42.15 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003137 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (845)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpG 122 (845)
+...++.|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|++|+--.|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 677899999999999999998 44555554 34678999999999999999887
No 91
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=69.49 E-value=8.2 Score=46.97 Aligned_cols=55 Identities=24% Similarity=0.383 Sum_probs=37.7
Q ss_pred HHHHHHHHCCCCEEEE-ccc---------------cCccC-----CCCceee----ec--cchhHHHHHHHHHHcCCEEE
Q 003137 66 DLIQKAKDGGLDVIQT-YVF---------------WNGHE-----PSPGKYY----FE--GNYDLVKFIKLAKQAGLYVN 118 (845)
Q Consensus 66 ~~l~k~ka~GlN~V~~-yv~---------------Wn~hE-----p~~G~~d----f~--g~~dl~~fl~~a~~~GL~Vi 118 (845)
+.|.-+|++|+|+|++ +|+ |...- |. +.|- +. ...+|.+||+.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999996 454 32220 10 1111 10 12689999999999999999
Q ss_pred Eec
Q 003137 119 LRI 121 (845)
Q Consensus 119 lrp 121 (845)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 984
No 92
>PRK09505 malS alpha-amylase; Reviewed
Probab=69.38 E-value=9.1 Score=47.24 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=42.7
Q ss_pred HHHHHHHHHHCCCCEEEE-ccccCccCCC----Cc--------e----------eeeccchhHHHHHHHHHHcCCEEEEe
Q 003137 64 WPDLIQKAKDGGLDVIQT-YVFWNGHEPS----PG--------K----------YYFEGNYDLVKFIKLAKQAGLYVNLR 120 (845)
Q Consensus 64 W~~~l~k~ka~GlN~V~~-yv~Wn~hEp~----~G--------~----------~df~g~~dl~~fl~~a~~~GL~Vilr 120 (845)
+.+.|.-+|++|+|+|-+ .++=+.|... .| . -.|....+|.++++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 467889999999999986 5654444321 11 1 12445679999999999999999998
Q ss_pred c
Q 003137 121 I 121 (845)
Q Consensus 121 p 121 (845)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 93
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=68.04 E-value=9.4 Score=34.23 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=34.0
Q ss_pred ceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeec-cCCCcEEEEEEeccCCc
Q 003137 497 PVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNM-RAGINKIALLSIAVGLP 554 (845)
Q Consensus 497 ~~L~i~~~~D~a~VfvNg~~vGs~~~~~~~~~~~~~~~~~l-~~g~n~L~ILven~Grv 554 (845)
..|++.+-....+-||||+++|+.... ..+.+ .+ ..|.++|++ ++..|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~---~~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPG---HQLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCC---CeEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 355655556689999999999886543 12222 24 678888977 7777764
No 94
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=67.39 E-value=9.7 Score=42.10 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=48.0
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccccCccCCC-Cceeeeccc--hhHHHHHHHHHHcCCEEEEecCceec
Q 003137 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (845)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~df~g~--~dl~~fl~~a~~~GL~VilrpGPyic 126 (845)
...+..++.++++|+.||..=.+.+-..++... -+.|+|+-. -|..++++..+++|++|++..=|+|+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 367778899999999996654433333323221 135665532 38999999999999999998877775
No 95
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=66.96 E-value=8.9 Score=46.09 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=41.9
Q ss_pred cHHHHHHHHHHCCCCEEEE-ccccCccCCCCceee----------eccchhHHHHHHHHHHcCCEEEEec
Q 003137 63 MWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYY----------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~~-yv~Wn~hEp~~G~~d----------f~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
-+.+.|.-+|++|+++|-+ .++-+-.. ...|+ |....||.++++.|+++||+|||-.
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4667889999999999987 45532111 01222 4456799999999999999999874
No 96
>PLN00196 alpha-amylase; Provisional
Probab=66.73 E-value=26 Score=40.96 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=40.6
Q ss_pred HHHHHHHHHCCCCEEEEc-cccCc--cCCCCce-ee-----eccchhHHHHHHHHHHcCCEEEEec
Q 003137 65 PDLIQKAKDGGLDVIQTY-VFWNG--HEPSPGK-YY-----FEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 65 ~~~l~k~ka~GlN~V~~y-v~Wn~--hEp~~G~-~d-----f~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
.+.|.-+|++|+++|-+. ++-+. |--.+.. |+ |....+|.++++.|+++||+||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467888999999999874 44321 2222221 22 3345799999999999999999985
No 97
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=65.68 E-value=13 Score=44.67 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHCCCCEEEE-ccccCccCCCCceee----------eccchhHHHHHHHHHHcCCEEEEec
Q 003137 62 EMWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPGKYY----------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~-yv~Wn~hEp~~G~~d----------f~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
.-+.+.|.-+|++|+|+|-+ +|+=+.. ....|| |....|+.++++.|+++||+|||-.
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~--~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQSPL--RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCCCC--CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34677899999999999986 4541110 011222 4456799999999999999999974
No 98
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=65.03 E-value=26 Score=43.19 Aligned_cols=111 Identities=14% Similarity=0.059 Sum_probs=67.6
Q ss_pred ccHHHHHHHHHHCCCCEEE---------------EccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceec
Q 003137 62 EMWPDLIQKAKDGGLDVIQ---------------TYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVC 126 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~---------------~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyic 126 (845)
+.-...|+.+|++|+|||- .|++| -|= ||+-|.= .-| ...++.+.|+.|..+..||-.
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~l--p~r~d~f--~~~--aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLL--PMRADLF--NRV--AWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccc--ccccCCc--CHH--HHHHHHhhCCEEEEeccceee
Confidence 4567789999999999986 46667 332 3443311 022 234488999999999999853
Q ss_pred e---------ecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccc
Q 003137 127 A---------EWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEY 190 (845)
Q Consensus 127 a---------Ew~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy 190 (845)
. +++..+-|..... +-..| =.+|..++++|+..|.+.|+.+ .+|=++|..-+-
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd~ 468 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIHP--EQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDDA 468 (671)
T ss_pred ccCCCcchhhhccccCCccccCC--CCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEecccc
Confidence 2 1211122222211 10112 2357788999999999999854 256666655543
No 99
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=65.02 E-value=21 Score=36.16 Aligned_cols=56 Identities=23% Similarity=0.258 Sum_probs=31.5
Q ss_pred ceEEecCcCeEEEEEECCEEEEEEe---c--ccCCC--eeEEEeeeeccCCCcEEEEEEeccCC
Q 003137 497 PVLTVMSAGHALHVFVNGQLAGTAY---G--SLEFP--KLTFTEGVNMRAGINKIALLSIAVGL 553 (845)
Q Consensus 497 ~~L~i~~~~D~a~VfvNg~~vGs~~---~--~~~~~--~~~~~~~~~l~~g~n~L~ILven~Gr 553 (845)
..|.|...+ +..+||||+.||... + +.... -.++.+.--|+.|.|+|.|++-+...
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 456665543 668999999999754 1 11111 12344444478899999999976443
No 100
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=63.01 E-value=29 Score=40.01 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=42.8
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003137 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
...+.|+++++.+|++||+...+-+- ....+.. ..|...++.|++.|+++.|-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 37889999999999999999887553 2222332 378889999999999999876
No 101
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=60.95 E-value=15 Score=44.27 Aligned_cols=79 Identities=20% Similarity=0.271 Sum_probs=48.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEc-cccCccCCCCcee--------eeccc----hhHHHHHHHHHHcCCEEEEecCceecee
Q 003137 62 EMWPDLIQKAKDGGLDVIQTY-VFWNGHEPSPGKY--------YFEGN----YDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~y-v~Wn~hEp~~G~~--------df~g~----~dl~~fl~~a~~~GL~VilrpGPyicaE 128 (845)
+.=++.|.+|+...||.|+.| ..|-+|.|-|+.= |+.++ .-+..+|+.|++.|+.++.=--=|-.-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 456779999999999999999 8899999976533 22332 3578999999999999885422222222
Q ss_pred c--CCCCCCccccc
Q 003137 129 W--NFGGFPVWLKY 140 (845)
Q Consensus 129 w--~~GG~P~WL~~ 140 (845)
. ..|=.|.|-+-
T Consensus 198 ~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 198 NYEEDGVSPEWGLY 211 (559)
T ss_dssp T--S--SS-GGBEE
T ss_pred CcccccCCchhhhh
Confidence 2 35667888863
No 102
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=60.79 E-value=17 Score=43.23 Aligned_cols=113 Identities=13% Similarity=0.084 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHCCCCEEEEccccCccCCC---CceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccc
Q 003137 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS---PGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (845)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~---~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 139 (845)
.++++++.||++|++.-+.-|-|+-.=|. .+.-+-.|..-...+|+...++||...+-. -.=.+|.||.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 48899999999999999999999987664 356888888888999999999999966542 1235799987
Q ss_pred c-CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEec
Q 003137 140 Y-IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ 185 (845)
Q Consensus 140 ~-~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 185 (845)
+ .-+-.-+..=..|+++++--|++...++| .+..-|-..|+.++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 6 34432222234578888888888888888 54434555555443
No 103
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=60.62 E-value=13 Score=48.90 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCEEEE-ccccCccCCC---Cce-----ee----------ec--cchhHHHHHHHHHHcCCEEEEec
Q 003137 66 DLIQKAKDGGLDVIQT-YVFWNGHEPS---PGK-----YY----------FE--GNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 66 ~~l~k~ka~GlN~V~~-yv~Wn~hEp~---~G~-----~d----------f~--g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
+.|.-+|++|+|+|++ +|+=+..|.. .|. || |. ...++.++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4567899999999997 5653322221 110 22 23 56799999999999999999984
No 104
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=60.33 E-value=9.4 Score=32.54 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=18.1
Q ss_pred eEEecCcCeEEEEEECCEEEEE
Q 003137 498 VLTVMSAGHALHVFVNGQLAGT 519 (845)
Q Consensus 498 ~L~i~~~~D~a~VfvNg~~vGs 519 (845)
.|.|.+.-..|.|||||+++|.
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~ 24 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGT 24 (71)
T ss_pred EEEEEEECCCCEEEECCEEecc
Confidence 5677776677899999999994
No 105
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=59.40 E-value=1.1e+02 Score=33.17 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCCCCcee--eecc--chhHHHHHHHHHHcCCEEEEecCcee
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKY--YFEG--NYDLVKFIKLAKQAGLYVNLRIGPYV 125 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~--df~g--~~dl~~fl~~a~~~GL~VilrpGPyi 125 (845)
..+...+.++++++.||-.=.+.+-+...+. .+.| +|+. --|..++++..+++|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6677888999999999885555555444432 4556 5542 24899999999999999999988877
No 106
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=59.19 E-value=23 Score=39.22 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=52.6
Q ss_pred CCCCcccHHHHHHHHHHCCCC--EEEEccccCccCCCCceeeecc--chhHHHHHHHHHHcCCEEEEecCceece
Q 003137 57 PRSSPEMWPDLIQKAKDGGLD--VIQTYVFWNGHEPSPGKYYFEG--NYDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (845)
Q Consensus 57 ~r~~~~~W~~~l~k~ka~GlN--~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl~~a~~~GL~VilrpGPyica 127 (845)
...+.+.-++.++++++.|+. +|-+-..|- ..-|.|.|+- --|..++++..++.|+++++..=|+|..
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~ 96 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT 96 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC
Confidence 456788889999999999964 666655563 3456666653 2489999999999999999998888864
No 107
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=58.52 E-value=19 Score=38.69 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=44.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGP 123 (845)
.....++.++.+|+.||++|++ ..|..+++ ..+..++|+.++++||+|+--.|.
T Consensus 69 ~q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 69 SKGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred HhhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 3367788889999999999998 45666665 347889999999999999987764
No 108
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=58.39 E-value=27 Score=29.97 Aligned_cols=32 Identities=13% Similarity=0.303 Sum_probs=24.3
Q ss_pred CcCeEEEEEECCEEEEEEecccCC--CeeEEEee
Q 003137 503 SAGHALHVFVNGQLAGTAYGSLEF--PKLTFTEG 534 (845)
Q Consensus 503 ~~~D~a~VfvNg~~vGs~~~~~~~--~~~~~~~~ 534 (845)
...|.|.||++++++|++++.... .++.|++.
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M~ 58 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQMA 58 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEEE
Confidence 568999999999999999986543 34555443
No 109
>PLN02361 alpha-amylase
Probab=57.65 E-value=23 Score=41.06 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCEEEEccccC---ccCCCCce-ee----eccchhHHHHHHHHHHcCCEEEEec
Q 003137 65 PDLIQKAKDGGLDVIQTYVFWN---GHEPSPGK-YY----FEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 65 ~~~l~k~ka~GlN~V~~yv~Wn---~hEp~~G~-~d----f~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
.+.|.-++++|+++|-+.=+.. .|--.+.. |+ |....+|.++|+.|+++||+||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4567788999999998753322 12112221 22 4456799999999999999999874
No 110
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=57.57 E-value=52 Score=40.90 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=37.3
Q ss_pred HHHHHHHCCCCEEEE-ccccCccC---CCCc-----eee----------e---ccchhHHHHHHHHHHcCCEEEEec
Q 003137 67 LIQKAKDGGLDVIQT-YVFWNGHE---PSPG-----KYY----------F---EGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 67 ~l~k~ka~GlN~V~~-yv~Wn~hE---p~~G-----~~d----------f---~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
.|.-+|++|+|+|++ +|+=...+ ...| -|| | ....+|.++|+.|+++||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 377899999999996 55511111 1111 111 1 124689999999999999999984
No 111
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=57.48 E-value=34 Score=28.60 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=43.0
Q ss_pred cccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 003137 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (845)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 119 (845)
|..-.+.++-+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 5556788899999999999999732 333 58777765 4678999999999988764
No 112
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=57.09 E-value=18 Score=40.54 Aligned_cols=72 Identities=26% Similarity=0.318 Sum_probs=56.8
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCce-eeeccchhHHHHHHHHHHcCCEEEEecCceecee
Q 003137 50 ISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGK-YYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (845)
Q Consensus 50 ~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~-~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaE 128 (845)
++=++.+.|.+.+.=...|++|...|+..| |=++|.|++.. --|. -+.+.++.|.++||+||+..-|-|--|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~I----Ftsl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRI----FTSLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccce----eeecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 455777888888888889999999999555 55788887652 1222 688999999999999999998877655
No 113
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=56.88 E-value=83 Score=33.72 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=59.2
Q ss_pred HHHHHHHHHHCCCCEEEEccccCccCCCCce-eeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccccCC
Q 003137 64 WPDLIQKAKDGGLDVIQTYVFWNGHEPSPGK-YYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIP 142 (845)
Q Consensus 64 W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~-~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p 142 (845)
-.+.|+++.++|++.|+.. ..+|..-. -+++ ..+++++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 3478999999999999983 23332210 0222 236889999999999986542 3331
Q ss_pred CeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEec
Q 003137 143 GINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ 185 (845)
Q Consensus 143 ~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 185 (845)
+.+.+.|+..+++..+++.+.++..+ .+ |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345677777777777887777766 33 45555553
No 114
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=56.75 E-value=23 Score=44.56 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-ccccC----ccCCCCc-----eeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQT-YVFWN----GHEPSPG-----KYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~-yv~Wn----~hEp~~G-----~~df~g~~dl~~fl~~a~~~GL~VilrpGP 123 (845)
+-+.|.+.|.-++++|+++|.+ +++=+ .|--..- .-.|.+..++.+|++.|+++||.|||-.=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4456889999999999999976 44311 1111000 112557789999999999999999998544
No 115
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=56.05 E-value=4.9 Score=42.67 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=43.2
Q ss_pred HHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 003137 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (845)
Q Consensus 65 ~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr 120 (845)
-...+++.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||.||+.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE
Confidence 5678899999999999999997765544334444 8999999999999999998
No 116
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=55.65 E-value=9.6 Score=38.11 Aligned_cols=16 Identities=50% Similarity=0.717 Sum_probs=15.0
Q ss_pred CCCC--CCceeEEEEEEe
Q 003137 829 DPCP--SIMKQLAVEAIC 844 (845)
Q Consensus 829 DPC~--gt~KyL~v~y~C 844 (845)
|||| |..|.|.|.|..
T Consensus 116 DP~p~~ge~K~L~V~Y~f 133 (151)
T PF11875_consen 116 DPCPFLGEPKQLRVRYRF 133 (151)
T ss_pred CCccccCCccEEEEEEEE
Confidence 9999 899999999975
No 117
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=55.36 E-value=3.3 Score=49.84 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=52.5
Q ss_pred ecCCCCeEEEEeeeccCCCCCCCCCccCCceecCChHHHHHhhcCCCCceEEEecCCCCC
Q 003137 768 MCGPGQKIKSIKFASFGTPEGVCGSYRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFG 827 (845)
Q Consensus 768 ~C~~g~~I~~I~~A~yGr~~~~C~~~~~~~C~~~~s~~~v~~~C~Gk~~C~v~as~~~Fg 827 (845)
.|.++.++..|.+|.||..+++|+.+-..+|.++.+...+.+.|..+..|++..-.+.++
T Consensus 331 ~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~ 390 (649)
T KOG0496|consen 331 YCEPALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKT 390 (649)
T ss_pred hcCccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcc
Confidence 466788888889999999999999998999999999999999999999999998655443
No 118
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=55.22 E-value=19 Score=39.15 Aligned_cols=59 Identities=29% Similarity=0.289 Sum_probs=42.7
Q ss_pred hhhhhcCC---CCCCceEEEEEEecCCCCcccccCCCcceEEecCcCeEEEEEECCEEEEEEe
Q 003137 462 LLEQINTT---RDATDYLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAY 521 (845)
Q Consensus 462 ~~Eql~~t---~d~~Gyl~Yrt~~~~~~~~~~~~~~~~~~L~i~~~~D~a~VfvNg~~vGs~~ 521 (845)
++-+++|. +|.+|.+||+.++.++.+.. ...+....|++.+.|-.|.|||||.-+=...
T Consensus 73 s~nDi~~d~~lrdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~ 134 (297)
T KOG2024|consen 73 SFNDIGQDWRLRDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDALEHE 134 (297)
T ss_pred chhccccCCccccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceeecccc
Confidence 45556553 57899999999998875431 2233457899999999999999997654433
No 119
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=54.95 E-value=33 Score=37.72 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=67.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeecc---chhHHHHHHHHHHcCCEEEEecCceeceecCCCCCC-
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEG---NYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFP- 135 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g---~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P- 135 (845)
.-+.-+.-++-+.++|+.-|-+-.-|... -....+||+. ..||.++++-|++.|..|+|+- + |..+|-.
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~-~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~--~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGW-EKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----H--SETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----E--CCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccc-cccccccccccCCccCHHHHHHHHHHcCCCEEEEE----e--CCcchhhH
Confidence 56667888999999999999998889872 2245677763 4699999999999999999873 3 3232211
Q ss_pred -------ccc---cc--CCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCce
Q 003137 136 -------VWL---KY--IPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPI 181 (845)
Q Consensus 136 -------~WL---~~--~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 181 (845)
.+| .+ +.++++=.-+. --+.+-+|+.+|++.-++|.|+..=+|++
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~ 159 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGAT 159 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS-
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCc
Confidence 111 11 22333211111 11456789999999999888765545443
No 120
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=53.25 E-value=24 Score=44.97 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 003137 101 YDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 101 ~dl~~fl~~a~~~GL~Vilrp 121 (845)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 478999999999999999974
No 121
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=53.02 E-value=71 Score=38.15 Aligned_cols=247 Identities=19% Similarity=0.318 Sum_probs=119.9
Q ss_pred HHCCCCEEEEccc--------cCccCCCCceee---eccch-h---HHHHHHHHHHc--CCEEEEecCceeceecCCCCC
Q 003137 72 KDGGLDVIQTYVF--------WNGHEPSPGKYY---FEGNY-D---LVKFIKLAKQA--GLYVNLRIGPYVCAEWNFGGF 134 (845)
Q Consensus 72 ka~GlN~V~~yv~--------Wn~hEp~~G~~d---f~g~~-d---l~~fl~~a~~~--GL~VilrpGPyicaEw~~GG~ 134 (845)
+-+|++.+|+.|- +.+-+ .|+-|+ |+-.+ | +-.+|+.|++. +|+++.-| | -.
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp-------W---Sp 178 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP-------W---SP 178 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE-------S-----
T ss_pred CCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec-------C---CC
Confidence 3479999998775 22222 233221 22111 2 34577777663 57777776 4 48
Q ss_pred CcccccCCCe----eee-cCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccCcc---cccC------CC
Q 003137 135 PVWLKYIPGI----NFR-TENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPME---YEIG------AP 200 (845)
Q Consensus 135 P~WL~~~p~~----~~R-~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~---~~~~------~~ 200 (845)
|+|+.....+ .++ ..++.|.++...||.+-++.++++ |=+|-++-+.||..... ..|. +.
T Consensus 179 P~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~------GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~ 252 (496)
T PF02055_consen 179 PAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKE------GIPIWAITPQNEPDNGSDPNYPWPSMGWTPEE 252 (496)
T ss_dssp -GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCT------T--ESEEESSSSCCGGGSTT-SSC--B--HHH
T ss_pred CHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHC------CCCeEEEeccCCCCCCCCCCCCCCcCCCCHHH
Confidence 9999864322 344 234678888899999888888844 44899999999987421 1121 12
Q ss_pred CHHHHH-HHHHHHHhcCC--CcceeecCC--CCCCC---cccc------CCC--Cccc--c--------cCCCCCCCCCc
Q 003137 201 GRSYTR-WAAKMAVGLGT--GVPWIMCKQ--DDAPD---PLIN------TCN--GFYC--D--------YFSPNKAYKPK 254 (845)
Q Consensus 201 ~~~y~~-~l~~~~~~~g~--~vp~~~~~~--~~~~~---~~~~------~~n--g~~~--~--------~~~~~~p~~P~ 254 (845)
.++|++ .|.-.+++.|+ ++-++..+. ...++ .++. ... ++++ . ......|++.+
T Consensus 253 ~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l 332 (496)
T PF02055_consen 253 QADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFL 332 (496)
T ss_dssp HHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEE
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEE
Confidence 356664 47778888877 776666653 11221 1111 011 1122 1 01134688999
Q ss_pred eeeecccccccccCCCCCC---CChHHHHHHHHHHHHhCCeeeeeeee------ecCCCCCCC-CCCCCccccCCCCCCC
Q 003137 255 MWTEAWTGWYTEFGGPVPH---RPVEDLAFSVAKFIQKGGSFINYYMY------HGGTNFGRT-AGGPFIATSYDYDAPL 324 (845)
Q Consensus 255 ~~~E~~~GWf~~WG~~~~~---~~~~~~~~~~~~~l~~g~s~~n~YM~------hGGTNfG~~-~Ga~~~~TSYDYdApl 324 (845)
+.||-..|.. .|+..... ..++..+..+..-+..+++ ++-++ .||-|++.- ..++..+..
T Consensus 333 ~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--gw~~WNl~LD~~GGP~~~~n~~d~~iivd~------- 402 (496)
T PF02055_consen 333 LFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--GWIDWNLALDENGGPNWVGNFCDAPIIVDS------- 402 (496)
T ss_dssp EEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--EEEEEESEBETTS---TT---B--SEEEEG-------
T ss_pred EeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--eeeeeeeecCCCCCCcccCCCCCceeEEEc-------
Confidence 9999875531 12211111 1123344444444555644 22222 488887532 112221110
Q ss_pred CcCCC-CCchhHHHHHHHHHHHH
Q 003137 325 DEYGL-LRQPKWGHLKDLHRAIK 346 (845)
Q Consensus 325 ~E~G~-~~t~Ky~~lr~l~~~~~ 346 (845)
+.+. .++|.|+.|..+.+|++
T Consensus 403 -~~~~~~~~p~yY~~gHfSKFV~ 424 (496)
T PF02055_consen 403 -DTGEFYKQPEYYAMGHFSKFVR 424 (496)
T ss_dssp -GGTEEEE-HHHHHHHHHHTTS-
T ss_pred -CCCeEEEcHHHHHHHHHhcccC
Confidence 1121 23688999988877665
No 122
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=52.90 E-value=29 Score=43.94 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=46.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-ccccCccCCCCc---ee---e-------eccchhHHHHHHHHHHcCCEEEEecCcee
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPSPG---KY---Y-------FEGNYDLVKFIKLAKQAGLYVNLRIGPYV 125 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~-yv~Wn~hEp~~G---~~---d-------f~g~~dl~~fl~~a~~~GL~VilrpGPyi 125 (845)
+-+.+.+.|.-++++|+|+|-. +++= ..+| -| | |.+..++.+|++.|+++||.|||-.=|-=
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~----a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH 93 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILA----ARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNH 93 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCcc----CCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 4556899999999999999986 3431 1122 11 2 44678999999999999999999865543
Q ss_pred c
Q 003137 126 C 126 (845)
Q Consensus 126 c 126 (845)
+
T Consensus 94 ~ 94 (879)
T PRK14511 94 M 94 (879)
T ss_pred c
Confidence 3
No 123
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=52.22 E-value=62 Score=32.45 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=62.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEccc--cCccCC----CCceeeeccchhHHHHHHHHHHcCCEEE-EecCceeceecCCCCC
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVF--WNGHEP----SPGKYYFEGNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGF 134 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~--Wn~hEp----~~G~~df~g~~dl~~fl~~a~~~GL~Vi-lrpGPyicaEw~~GG~ 134 (845)
...++..+.+++.|+..+....+ |..... .+.. .-.....+.+.+++|++.|...+ +.+|.
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~----------- 94 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGR----------- 94 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTT-----------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcc-----------
Confidence 34567778889999997765444 433211 1111 11223589999999999999865 55442
Q ss_pred CcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccCc
Q 003137 135 PVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPM 193 (845)
Q Consensus 135 P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~ 193 (845)
|-.. + ......-++.+.+.+++|+++.+++ | +.+-+||..+..
T Consensus 95 --~~~~-~----~~~~~~~~~~~~~~l~~l~~~a~~~-------g--v~i~lE~~~~~~ 137 (213)
T PF01261_consen 95 --YPSG-P----EDDTEENWERLAENLRELAEIAEEY-------G--VRIALENHPGPF 137 (213)
T ss_dssp --ESSS-T----TSSHHHHHHHHHHHHHHHHHHHHHH-------T--SEEEEE-SSSSS
T ss_pred --cccc-c----CCCHHHHHHHHHHHHHHHHhhhhhh-------c--ceEEEecccCcc
Confidence 1000 0 1122355677777888888888844 2 446689988764
No 124
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=51.98 E-value=15 Score=37.38 Aligned_cols=53 Identities=26% Similarity=0.562 Sum_probs=31.0
Q ss_pred EEEeCCCceEEEEECCeeccccccccccCCCCCcccccCccccccccCCCCCCceeEEec---CCCccccCCcEEEEE
Q 003137 641 ALDMGSMGKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHV---PRSWLKPTGNLLVVF 715 (845)
Q Consensus 641 ~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~iG~~~~~~~~t~cg~PQqtlY~V---P~~~Lk~g~N~Ivvf 715 (845)
.|..++.|+=.+||||+.+|+---. -|. -.| +...+| . =.++|++|+|.|.|.
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~l~---P~~-------t~y-----------~~~~~Y-~tyDVt~~L~~G~N~iav~ 62 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGPLA---PGW-------TDY-----------DKRVYY-QTYDVTPYLRPGENVIAVW 62 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE------------------B-----------TTEEEE-EEEE-TTT--TTEEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCCccc---ccc-------ccC-----------CCceEE-EEEeChHHhCCCCCEEEEE
Confidence 4677778888999999999975310 110 001 332222 2 266899999999884
No 125
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=51.51 E-value=29 Score=46.93 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=46.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-cccCccCCCCc---ee----------eeccchhHHHHHHHHHHcCCEEEEecCc
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPSPG---KY----------YFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~y-v~Wn~hEp~~G---~~----------df~g~~dl~~fl~~a~~~GL~VilrpGP 123 (845)
+-+.|.+.|.-+|++|+|+|-+- || +..+| -| .|.+..++.++++.|+++||.|||-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 55669999999999999999873 43 22222 12 2456789999999999999999998644
No 126
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=50.78 E-value=25 Score=39.20 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=48.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCCCCc--eeeeccch--hHHHHHHHHHHcCCEEEEecCcee
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPG--KYYFEGNY--DLVKFIKLAKQAGLYVNLRIGPYV 125 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G--~~df~g~~--dl~~fl~~a~~~GL~VilrpGPyi 125 (845)
..+.-++.++++++.||-.=.+.+-|.... ..+ .|+|+-.+ |..++|+..+++|++|++..=|+|
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v 90 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTF 90 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCc
Confidence 566678899999999887655544444333 234 77776443 899999999999999999776666
No 127
>PRK03705 glycogen debranching enzyme; Provisional
Probab=50.31 E-value=26 Score=43.21 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=37.3
Q ss_pred HHHHHHHCCCCEEEE-ccccCccCCCC---c-----eee----------ecc-----chhHHHHHHHHHHcCCEEEEec
Q 003137 67 LIQKAKDGGLDVIQT-YVFWNGHEPSP---G-----KYY----------FEG-----NYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 67 ~l~k~ka~GlN~V~~-yv~Wn~hEp~~---G-----~~d----------f~g-----~~dl~~fl~~a~~~GL~Vilrp 121 (845)
.|.-+|++|+|+|++ +|+=...++.. | -|| |.. ..++.++++.|+++||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999996 45422212110 1 011 222 2579999999999999999984
No 128
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=50.26 E-value=52 Score=36.27 Aligned_cols=108 Identities=15% Similarity=0.211 Sum_probs=70.0
Q ss_pred EEEEEEeeCCCCCcc-cHH---HHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 003137 48 ILISGSIHYPRSSPE-MWP---DLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (845)
Q Consensus 48 ~~~sG~~Hy~r~~~~-~W~---~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGP 123 (845)
+-+++..|+...|.. ..+ ++|++-.++|.+.+-|=.+ ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 568888888664332 222 2444444699999988544 3434 6889999999997765555555
Q ss_pred eec---------eecCCCCCCcccccC-CCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003137 124 YVC---------AEWNFGGFPVWLKYI-PGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (845)
Q Consensus 124 yic---------aEw~~GG~P~WL~~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 170 (845)
..+ +||..--+|.|+.+. .. ...+++...+.--++..++++.+.+
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~~--~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLEP--IKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444 577777789999862 11 1233345556677788888888773
No 129
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=49.49 E-value=30 Score=45.02 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 003137 101 YDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 101 ~dl~~fl~~a~~~GL~Vilrp 121 (845)
.+|.++|+.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999984
No 130
>PRK12677 xylose isomerase; Provisional
Probab=48.03 E-value=1.7e+02 Score=33.84 Aligned_cols=90 Identities=11% Similarity=0.101 Sum_probs=54.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeec---cchhHHHHHHHHHHcCCEEE-EecCceeceecCCCCCCcc
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE---GNYDLVKFIKLAKQAGLYVN-LRIGPYVCAEWNFGGFPVW 137 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~---g~~dl~~fl~~a~~~GL~Vi-lrpGPyicaEw~~GG~P~W 137 (845)
-.+++.+++++++|+..|+.. .+..--|+.+ -...+.++.+++++.||.|. +-|.-|.+..+..|
T Consensus 31 ~~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g----- 99 (384)
T PRK12677 31 LDPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG----- 99 (384)
T ss_pred CCHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC-----
Confidence 347899999999999999883 1111112221 12358999999999999977 44321111111111
Q ss_pred cccCCCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003137 138 LKYIPGINFRTENGPFKAEMHKFTKKIVDMMK 169 (845)
Q Consensus 138 L~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 169 (845)
.+-+.|+..++...+.+.+.++.-+
T Consensus 100 -------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 -------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred -------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2345567776766666666666555
No 131
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=45.92 E-value=1.7e+02 Score=31.12 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=31.2
Q ss_pred HHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 003137 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (845)
Q Consensus 65 ~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi 118 (845)
++.++.|+++|++++.+- |-|| |||. ..-|.+.++.+++.|+..+
T Consensus 63 ~~~~~~l~~~G~d~~~la---NNH~-----fD~G-~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 63 PENAAALKAAGFDVVSLA---NNHS-----LDYG-EEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHHhCCCEEEec---cCcc-----cccc-hHHHHHHHHHHHHCCCCEe
Confidence 346789999999999871 2343 5553 3347777888888887654
No 132
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=45.72 E-value=1.1e+02 Score=35.27 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=66.5
Q ss_pred CCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccccCCCe----eeecC-ChhhHHHHHHHHHHH
Q 003137 90 PSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGI----NFRTE-NGPFKAEMHKFTKKI 164 (845)
Q Consensus 90 p~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~----~~R~~-d~~y~~~~~~~~~~l 164 (845)
+..|.|||+.+..=..||+.|++.|...++-+- =-.|.|+.+.-.. ...++ -+...++-..|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 567999999877778899999999999877541 2478888763210 00011 234567777888888
Q ss_pred HHHHHhcccccccCCceEEecccccccCccc-------ccC-CCCHHHHHHHHHHHHhcCCCcceeecC
Q 003137 165 VDMMKAERLFESQGGPIILSQIENEYGPMEY-------EIG-APGRSYTRWAAKMAVGLGTGVPWIMCK 225 (845)
Q Consensus 165 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~~-------~~~-~~~~~y~~~l~~~~~~~g~~vp~~~~~ 225 (845)
+++++++.+ +|=-+=-=||....-. .+. +.....++.|...+++.|+..-+..|+
T Consensus 164 v~~~~~~GI------~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 164 VKHYKKWGI------NFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHCTT--------EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHhcCC------ccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecc
Confidence 888864432 3444444588764210 011 133677888999999999987655554
No 133
>PLN02877 alpha-amylase/limit dextrinase
Probab=45.68 E-value=39 Score=43.33 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCCEEEEec
Q 003137 101 YDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 101 ~dl~~fl~~a~~~GL~Vilrp 121 (845)
+++.++|+.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999984
No 134
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=45.67 E-value=73 Score=34.89 Aligned_cols=82 Identities=22% Similarity=0.328 Sum_probs=61.3
Q ss_pred eeEEEccCcEEECCeEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeec--cchhHHHHH
Q 003137 31 GSVSYDSKAIAINGKRRILISGSIHYPRS-SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE--GNYDLVKFI 107 (845)
Q Consensus 31 ~~v~~d~~~~~idG~~~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~--g~~dl~~fl 107 (845)
..|... .+.+.+.+++++.|=- -+ .++.-.+.-+++|++|+..++.|.|=+-.. -+.|. |...+..+-
T Consensus 14 ~~~~~~--~~~~g~~~~~~iaGPC---sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l~ 84 (266)
T PRK13398 14 TIVKVG--DVVIGGEEKIIIAGPC---AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKILK 84 (266)
T ss_pred cEEEEC--CEEEcCCCEEEEEeCC---cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHHH
Confidence 345553 3677777888888832 22 577778889999999999999998874433 23555 577899999
Q ss_pred HHHHHcCCEEEEec
Q 003137 108 KLAKQAGLYVNLRI 121 (845)
Q Consensus 108 ~~a~~~GL~Vilrp 121 (845)
+.|++.||.++-.|
T Consensus 85 ~~~~~~Gl~~~te~ 98 (266)
T PRK13398 85 EVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHcCCCEEEee
Confidence 99999999888764
No 135
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=44.68 E-value=5.1e+02 Score=29.28 Aligned_cols=229 Identities=12% Similarity=0.100 Sum_probs=101.7
Q ss_pred HHHHHHHCCCCEEEE-------ccccCccCCCCceeeeccch-hHHHHHHHHHHcCCEEEEecCceeceecCCCCCCccc
Q 003137 67 LIQKAKDGGLDVIQT-------YVFWNGHEPSPGKYYFEGNY-DLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWL 138 (845)
Q Consensus 67 ~l~k~ka~GlN~V~~-------yv~Wn~hEp~~G~~df~g~~-dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL 138 (845)
-.+.+|++|+.-|=. +-.|.-.-..-..-+-...+ -+.+|.+.|+++||++-+=..| ++|.....+.-.
T Consensus 96 W~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~---~dw~~~~~~~~~ 172 (346)
T PF01120_consen 96 WAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP---WDWHHPDYPPDE 172 (346)
T ss_dssp HHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES---SSCCCTTTTSSC
T ss_pred HHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc---hHhcCcccCCCc
Confidence 478899999985532 22254432221111111223 4678999999999987773322 366543333222
Q ss_pred ccC-CCeeeecCChhhHHHHH-HHHHHHHHHHHhccc--ccccCCceEEecccccccCcccccCCCCHHHHHHHHHHHHh
Q 003137 139 KYI-PGINFRTENGPFKAEMH-KFTKKIVDMMKAERL--FESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVG 214 (845)
Q Consensus 139 ~~~-p~~~~R~~d~~y~~~~~-~~~~~l~~~l~~~~~--~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 214 (845)
... +. .....+.+.+.++ .++.+|-+.+.+++. ++-+||.- . .....-...+.+++++
T Consensus 173 ~~~~~~--~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~--------~--------~~~~~~~~~~~~~i~~ 234 (346)
T PF01120_consen 173 EGDENG--PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWP--------D--------PDEDWDSAELYNWIRK 234 (346)
T ss_dssp HCHHCC----HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTS--------C--------CCTHHHHHHHHHHHHH
T ss_pred cCCccc--ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCC--------c--------cccccCHHHHHHHHHH
Confidence 211 11 0112334444445 445555555553321 11222210 0 1122233667777777
Q ss_pred cCCCcceeecCCCCCCCccccCCCCccc-ccCCCC-CCCCCceeeecccccccccCC---CCCCCChHHHHHHHHHHHHh
Q 003137 215 LGTGVPWIMCKQDDAPDPLINTCNGFYC-DYFSPN-KAYKPKMWTEAWTGWYTEFGG---PVPHRPVEDLAFSVAKFIQK 289 (845)
Q Consensus 215 ~g~~vp~~~~~~~~~~~~~~~~~ng~~~-~~~~~~-~p~~P~~~~E~~~GWf~~WG~---~~~~~~~~~~~~~~~~~l~~ 289 (845)
..-++.+....+....... .+.. +...+. ....|.-... .--..||- ....++++++...+.+..++
T Consensus 235 ~qp~~ii~~r~~~~~~~~~-----d~~~~E~~~~~~~~~~pwE~~~---ti~~~W~y~~~~~~~ks~~~li~~l~~~vs~ 306 (346)
T PF01120_consen 235 LQPDVIINNRWGGNEQGDG-----DYNTPERGIPGEIQGRPWETCT---TIGPSWGYNTPDEKYKSADELIDILVDSVSR 306 (346)
T ss_dssp HSTTSEEECCCSSCSSCCB-----SCCEECTTBTTTEEESEEEEEE---ESSSSSS-CGGGCGS--HHHHHHHHHHHHTB
T ss_pred hCCeEEEecccCCCCCccc-----cccchhccCCCCCCCCCccccC---cCCCCCcccCCCCCcCCHHHHHHHHHHHhcc
Confidence 6655522221111000000 0000 111111 0111221111 11233443 23446888888888888899
Q ss_pred CCee-eeeeeeecCCCCCCCCCCCCccccCCCCCCCCcCCCCCchhHHHHHHHHHHHHhhcC
Q 003137 290 GGSF-INYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEP 350 (845)
Q Consensus 290 g~s~-~n~YM~hGGTNfG~~~Ga~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~~~~~~~ 350 (845)
|+++ +|. +.+.+|.+-.+.-..||++.+.|+....
T Consensus 307 ngnlLLNi--------------------------gP~~dG~ip~~~~~~L~e~G~Wl~~nge 342 (346)
T PF01120_consen 307 NGNLLLNI--------------------------GPDPDGTIPEEQVERLREIGDWLKVNGE 342 (346)
T ss_dssp TEEEEEEE-----------------------------TTSS--HHHHHHHHHHHHHHHHHGG
T ss_pred CceEEEec--------------------------CCCCCCCcCHHHHHHHHHHHHHHHhccc
Confidence 9884 443 2345677766777889999988876543
No 136
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=44.56 E-value=36 Score=38.44 Aligned_cols=74 Identities=11% Similarity=0.154 Sum_probs=54.0
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccc--hhH--HHHHHHHHHcCCEEEEecCceec
Q 003137 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDL--VKFIKLAKQAGLYVNLRIGPYVC 126 (845)
Q Consensus 54 ~Hy~r~---~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~--~dl--~~fl~~a~~~GL~VilrpGPyic 126 (845)
+|..|. +.+..++.++++++.||..=.+.+-+.+++ ..+.|+|+.. -|. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 567788999999999987555444433333 2466776653 377 99999999999999999888887
Q ss_pred ee
Q 003137 127 AE 128 (845)
Q Consensus 127 aE 128 (845)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 137
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.96 E-value=39 Score=37.66 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=47.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCC-----CCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceec
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-----SPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp-----~~G~~df~g~--~dl~~fl~~a~~~GL~VilrpGPyic 126 (845)
..+...+.++++|+.||-.=.+.+-+..+.. .-|.|+|+-. -|..++++..+++|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4666788999999999875444443333331 2346666533 38999999999999999998767664
No 138
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=43.88 E-value=41 Score=34.63 Aligned_cols=89 Identities=20% Similarity=0.335 Sum_probs=56.7
Q ss_pred EEEEeeCCCCC-----cccHHHHHHHHHHCCCCEEEEccccCccCCCCceeee--cc-chhHHHHHHHHHHcCCEEEEec
Q 003137 50 ISGSIHYPRSS-----PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYF--EG-NYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 50 ~sG~~Hy~r~~-----~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df--~g-~~dl~~fl~~a~~~GL~Vilrp 121 (845)
.-|.+||+|.. .++.+.-++.++..++.. ...|--.|..++.+.- +- ...+.+|+++.+++|.++++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 34999998753 566777888888865532 1123344443444321 11 1478899999999999999988
Q ss_pred Cceecee----c---CCCCCCcccccC
Q 003137 122 GPYVCAE----W---NFGGFPVWLKYI 141 (845)
Q Consensus 122 GPyicaE----w---~~GG~P~WL~~~ 141 (845)
+++--.. . +...+|.|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 8753211 1 145688999764
No 139
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=43.46 E-value=39 Score=38.06 Aligned_cols=74 Identities=9% Similarity=0.024 Sum_probs=53.0
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceecee
Q 003137 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCAE 128 (845)
Q Consensus 54 ~Hy~r~---~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~GL~VilrpGPyicaE 128 (845)
+|..|. ..++-++.++++++.||..=.+.+-+.+ ....+.|+|+-. -|..++++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 344553 4566788899999999875554433322 234566777643 3899999999999999999988888753
No 140
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=43.33 E-value=1.1e+02 Score=29.21 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=42.1
Q ss_pred eEEEEEEecCCCCcccccCCCcceEEecCcCeEEEEEECCEEEEEEecccC-----CCeeEEEeeeeccCC-CcEEEEEE
Q 003137 475 YLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLE-----FPKLTFTEGVNMRAG-INKIALLS 548 (845)
Q Consensus 475 yl~Yrt~~~~~~~~~~~~~~~~~~L~i~~~~D~a~VfvNg~~vGs~~~~~~-----~~~~~~~~~~~l~~g-~n~L~ILv 548 (845)
.+.|++.|..+.++. -++.+. ..|.+.+||||+.+-...+... .........+.|.+| .+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 567888887765542 133343 6788999999999977665321 001122234456665 67888876
Q ss_pred eccC
Q 003137 549 IAVG 552 (845)
Q Consensus 549 en~G 552 (845)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 5544
No 141
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=42.60 E-value=93 Score=33.33 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=54.9
Q ss_pred Cceeeec-cchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003137 92 PGKYYFE-GNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (845)
Q Consensus 92 ~G~~df~-g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 170 (845)
.|...+. ...++..+++.|++.|++|++..|= |..+.+ . .+ ..++. .-+++.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~~---~----~~---~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPEF---T----AA---LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCcc---h----hh---hcCHH---HHHHHHHHHHHHHHH
Confidence 4666664 3457899999999999999998761 221111 0 01 12333 335688888888886
Q ss_pred cccccccCCceEEecccccccCcccccCCCCHHHHHHHHHHHHhcC
Q 003137 171 ERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLG 216 (845)
Q Consensus 171 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g 216 (845)
+++ =++.|+=|+.... ...-..+++.|++.+.+.|
T Consensus 98 ~~~--------DGIdiDwE~~~~~---~~~~~~fv~~Lr~~l~~~~ 132 (253)
T cd06545 98 YNL--------DGIDVDLEGPDVT---FGDYLVFIRALYAALKKEG 132 (253)
T ss_pred hCC--------CceeEEeeccCcc---HhHHHHHHHHHHHHHhhcC
Confidence 643 2455666665321 0111234555555554433
No 142
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=41.90 E-value=1.2e+02 Score=28.56 Aligned_cols=80 Identities=13% Similarity=0.277 Sum_probs=49.7
Q ss_pred ceEEEEECCeeccccccccccCCCCCcccccCccccccccCCCCCCceeEEecCCCccccCCcEEEEEEecCCCCCceEE
Q 003137 648 GKGQVWVNGQSIGRHWPAYKASGSCGYCSYTGTYTEKKCLSNCGEASQRWYHVPRSWLKPTGNLLVVFEEWGGNPNGISL 727 (845)
Q Consensus 648 gKG~vwVNG~nlGRYW~~~~~~G~~~~c~~iG~~~~~~~~t~cg~PQqtlY~VP~~~Lk~g~N~IvvfE~~g~~p~~i~l 727 (845)
.+.+|++||.-+.||=-. . .. ..++ |+|+.+ .|.|+|.| + + ..+++
T Consensus 27 ~~~~I~~~g~~~~~i~L~---~--------~~-------------~~~~-i~i~~~---~g~~~i~i-~--~---g~vrv 72 (113)
T PF07009_consen 27 KYAVIYVDGKEVKRIPLD---K--------VN-------------EDKT-IEIDGD---GGYNTIEI-K--D---GKVRV 72 (113)
T ss_dssp EEEEEEETTEEEEEEETT---S---------B-------------SEEE-EEEETT---TCEEEEEE-E--T---TEEEE
T ss_pred eEEEEEECCEEEEEEECC---C--------CC-------------CCEE-EEEecC---CcEEEEEE-E--C---CEEEE
Confidence 668899999999999311 0 01 3445 457553 35565554 2 2 34777
Q ss_pred eee-chhhhhhhhhccCCcccccccccCCCccCCCCCceeEecCCCCeEEEEe
Q 003137 728 VRR-EIDSVCAYMYEWQPTLINWQLHASGKVNKPLRPKAHLMCGPGQKIKSIK 779 (845)
Q Consensus 728 ~~~-~~~~ic~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~L~C~~g~~I~~I~ 779 (845)
.+. =.+++|.+.. |-+..|+ .+-|-|.+.++.|.
T Consensus 73 ~~s~CpdkiCv~~G---------~I~~~G~---------~IVCLPn~lvI~I~ 107 (113)
T PF07009_consen 73 IESDCPDKICVKTG---------WISRPGQ---------SIVCLPNRLVIEIE 107 (113)
T ss_dssp EEESTSS-HHHHS----------SB-STT----------EEEETTTTEEEEEE
T ss_pred EECCCCCcchhhCC---------CcCCCCC---------EEEEcCCEEEEEEE
Confidence 777 5679998873 3333333 58999999887776
No 143
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.53 E-value=1.2e+02 Score=33.67 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=44.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----cCcc-CCC--CceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVF----WNGH-EPS--PGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~----Wn~h-Ep~--~G~~df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
+.+.-++.++.|...|+|.+..|+- +.-+ |.. +|.|.= .++.++++.|++.||.||--+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC
Confidence 4567789999999999999998753 3222 111 344443 499999999999999999754
No 144
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=40.30 E-value=28 Score=38.68 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCE--EE-Eec
Q 003137 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLY--VN-LRI 121 (845)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~--Vi-lrp 121 (845)
.|++.+++++..|+ +|+..-+--..|..|+.|- |+...+++|...||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 49999999999999 6788888889999999996 899999999999996 44 776
No 145
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=39.85 E-value=1.1e+02 Score=32.26 Aligned_cols=125 Identities=20% Similarity=0.191 Sum_probs=71.6
Q ss_pred cccHHHHHHHHHHCCCCE-EEE--ccccCccCC---CCc--eeee-----------cc--chhHHHHHHHHHHcCCEEEE
Q 003137 61 PEMWPDLIQKAKDGGLDV-IQT--YVFWNGHEP---SPG--KYYF-----------EG--NYDLVKFIKLAKQAGLYVNL 119 (845)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~-V~~--yv~Wn~hEp---~~G--~~df-----------~g--~~dl~~fl~~a~~~GL~Vil 119 (845)
++.-.+.++++|+.|+.+ |+| |+.|...+. .=. -+|+ +| +..+-+.|+.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 355578899999999974 455 445422221 111 1232 22 23455667778888998888
Q ss_pred ecCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccc-----------
Q 003137 120 RIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIEN----------- 188 (845)
Q Consensus 120 rpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN----------- 188 (845)
|. |. +|++ ++++.-++++.+|++.+. +. +|-...--+
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg~ 180 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLGK 180 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcCC
Confidence 85 32 3553 345666666666665531 11 111111011
Q ss_pred cccCcccccCCCCHHHHHHHHHHHHhcCCCc
Q 003137 189 EYGPMEYEIGAPGRSYTRWAAKMAVGLGTGV 219 (845)
Q Consensus 189 Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 219 (845)
+|-.. +..+...+.++++++++++.|+.+
T Consensus 181 ~y~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 181 TWSMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred cCccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 22111 123478899999999999999876
No 146
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.46 E-value=58 Score=36.35 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=46.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEccccCccCC---CCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceec
Q 003137 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP---SPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (845)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp---~~G~~df~g~--~dl~~fl~~a~~~GL~VilrpGPyic 126 (845)
.+.-.+.++++|+.||-+=.+.+-+....- ....|+|.-. -|..++++..+++|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 345678899999999976555443322221 1234666432 38999999999999999998877774
No 147
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=39.42 E-value=1.3e+02 Score=31.88 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=64.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeec-cchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCccc
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE-GNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWL 138 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~-g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL 138 (845)
.+..++..++.++++|+.++-+|..... ....|..+ |..|-..-+++|+++|+. + |-|-++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----P-----------GTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 6788999999999999999999988765 23334443 778999999999999982 2 233333
Q ss_pred ccCCCeeeecCChhhHHHHHHHHHHHHHHHHhc
Q 003137 139 KYIPGINFRTENGPFKAEMHKFTKKIVDMMKAE 171 (845)
Q Consensus 139 ~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~ 171 (845)
--+.+. .+..+...+..||+.+.+.|...
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~ 140 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEA 140 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhc
Confidence 322221 22336778888999998888843
No 148
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.39 E-value=93 Score=30.73 Aligned_cols=47 Identities=28% Similarity=0.353 Sum_probs=36.1
Q ss_pred HHHHHHHCCCCEEEEccccCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEE
Q 003137 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNL 119 (845)
Q Consensus 67 ~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~GL~Vil 119 (845)
.++.+.|.+-.||+|-.+|- .|.-.|+|. .+|-+.+. |+...+.|+.
T Consensus 39 t~qeLeal~~~T~ete~Pw~-----~gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 39 TLQELEALPDETIETETPWT-----QGNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred cHHHHhcCCcceEEEecCcc-----cCceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 36778889999999999995 377788885 46667777 6667777774
No 149
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=38.09 E-value=51 Score=36.78 Aligned_cols=72 Identities=10% Similarity=0.102 Sum_probs=50.9
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceec
Q 003137 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (845)
Q Consensus 54 ~Hy~r~---~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~GL~VilrpGPyic 126 (845)
+|..|. ..+..++.++++++.+|-.=.+.+-+.... .-+.|+|+.. -|..+|++..+++|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 344554 566678999999999987544433322222 3456776543 48999999999999999998877775
No 150
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=37.80 E-value=52 Score=35.70 Aligned_cols=50 Identities=26% Similarity=0.223 Sum_probs=37.0
Q ss_pred HHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003137 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (845)
Q Consensus 67 ~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpG 122 (845)
...++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII-----GHSERRQYFGET-DELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe-----CcccccCccCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999999888 677666666532 33444445559999999999987
No 151
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=37.15 E-value=1.3e+02 Score=34.06 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=45.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccc----cCccC----------------------------CCCceeeeccchhHHHH
Q 003137 59 SSPEMWPDLIQKAKDGGLDVIQTYVF----WNGHE----------------------------PSPGKYYFEGNYDLVKF 106 (845)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~~yv~----Wn~hE----------------------------p~~G~~df~g~~dl~~f 106 (845)
.+.+..++.|+.|...++|+...++- |.+-- +..|.|. ..|+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHH
Confidence 36888999999999999999998763 43211 1123444 3499999
Q ss_pred HHHHHHcCCEEEEec
Q 003137 107 IKLAKQAGLYVNLRI 121 (845)
Q Consensus 107 l~~a~~~GL~Vilrp 121 (845)
++.|++.|+.||.-+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999753
No 152
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=37.04 E-value=68 Score=34.63 Aligned_cols=50 Identities=28% Similarity=0.310 Sum_probs=40.3
Q ss_pred HHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003137 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (845)
Q Consensus 67 ~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpG 122 (845)
...++|++|++.|-+ -|..++--|.-+ +.++.+=++.|.++||.+|++.|
T Consensus 76 S~~mL~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 76 SAEMLKDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred CHHHHHHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 356899999998888 566666555544 66889999999999999999987
No 153
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=36.96 E-value=63 Score=36.36 Aligned_cols=62 Identities=15% Similarity=0.082 Sum_probs=46.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----cCccCC------CCceee--------eccchhHHHHHHHHHHcCCEEEEec
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------SPGKYY--------FEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~----Wn~hEp------~~G~~d--------f~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
+.+..++.|+.|...++|+...++- |.+.-+ ..|.+. |=-..|+.++++.|++.|+.||.-+
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEEec
Confidence 7888999999999999999998874 654321 123221 1113599999999999999999753
No 154
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=36.71 E-value=52 Score=40.83 Aligned_cols=55 Identities=27% Similarity=0.353 Sum_probs=41.1
Q ss_pred HHHHHHHCCCCEEEE-ccccCccCCCC---c-----------------eeeecc-----chhHHHHHHHHHHcCCEEEEe
Q 003137 67 LIQKAKDGGLDVIQT-YVFWNGHEPSP---G-----------------KYYFEG-----NYDLVKFIKLAKQAGLYVNLR 120 (845)
Q Consensus 67 ~l~k~ka~GlN~V~~-yv~Wn~hEp~~---G-----------------~~df~g-----~~dl~~fl~~a~~~GL~Vilr 120 (845)
.|.-+|++|+++|+. +|+.-..|+.. | .|--+. .+.+..+|+.++++||-|||-
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 499999999999996 78866655543 2 222222 247888899999999999998
Q ss_pred c
Q 003137 121 I 121 (845)
Q Consensus 121 p 121 (845)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 155
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.63 E-value=67 Score=35.39 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=46.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc--cCccC------CCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCce
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVF--WNGHE------PSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPY 124 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~--Wn~hE------p~~G~~df~g~--~dl~~fl~~a~~~GL~VilrpGPy 124 (845)
+.+.-++.++++|+.||-.=-+++- |.... ..-+.|+|+-. -|..++++..++.|++|++..=|+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 5677788999999999875555443 43321 12346776543 489999999999999999876443
No 156
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=36.54 E-value=60 Score=36.53 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=50.8
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceece
Q 003137 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCA 127 (845)
Q Consensus 54 ~Hy~r~---~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~GL~VilrpGPyica 127 (845)
+|..|. ..+..++.++++|+.||-.=.+.+-+.+.. .-+.|+|+-. -|..++++..+++|++|++..=|+|+.
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~ 90 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKV 90 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeC
Confidence 455553 566678899999999987544333333222 3445666543 378999999999999999988777753
No 157
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=36.10 E-value=73 Score=35.41 Aligned_cols=59 Identities=27% Similarity=0.326 Sum_probs=41.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccC---ccCCCCcee--------eeccchhHHHHHHHHHHcCCEEEEec
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWN---GHEPSPGKY--------YFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn---~hEp~~G~~--------df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
.+..-+++++.+|..|+|++-+-+==. +.=|....+ .|- |+..||+.|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 566778899999999999886533211 111222111 233 89999999999999999995
No 158
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=36.04 E-value=68 Score=28.70 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=26.2
Q ss_pred ccCCceEEeccccc-ccCccccc----C-CCCHHHHHHHHHHH---HhcCCCcceee
Q 003137 176 SQGGPIILSQIENE-YGPMEYEI----G-APGRSYTRWAAKMA---VGLGTGVPWIM 223 (845)
Q Consensus 176 ~~gGpII~~QiENE-yg~~~~~~----~-~~~~~y~~~l~~~~---~~~g~~vp~~~ 223 (845)
++...|.+|+|=|| .++....+ + .....|.+||++++ |+.+...|+..
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 34458999999999 56322111 1 13466777777765 45566777643
No 159
>PLN03059 beta-galactosidase; Provisional
Probab=35.92 E-value=1.3e+02 Score=38.14 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=31.4
Q ss_pred CCCceEEEEEEECCCCCC------CeEEEeCCC-ceEEEEECCeeccccc
Q 003137 621 RQPLTWYRTTFSAPAGNA------PLALDMGSM-GKGQVWVNGQSIGRHW 663 (845)
Q Consensus 621 ~~~~~fYr~tF~lp~~~d------p~~Ld~~g~-gKG~vwVNG~nlGRYW 663 (845)
..+..||+++|+++.... ...|.+.+. -+.+|||||.-+|.-.
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~ 517 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVY 517 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEE
Confidence 457899999999865321 123666655 4689999999999875
No 160
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=35.19 E-value=1.4e+02 Score=35.06 Aligned_cols=99 Identities=20% Similarity=0.298 Sum_probs=59.4
Q ss_pred eCCCC--CcccHHHHHHHHHHCCCCEEEE-ccccCccC--C--CCceeee-----cc-----chhHHHHHHHHH-HcCCE
Q 003137 55 HYPRS--SPEMWPDLIQKAKDGGLDVIQT-YVFWNGHE--P--SPGKYYF-----EG-----NYDLVKFIKLAK-QAGLY 116 (845)
Q Consensus 55 Hy~r~--~~~~W~~~l~k~ka~GlN~V~~-yv~Wn~hE--p--~~G~~df-----~g-----~~dl~~fl~~a~-~~GL~ 116 (845)
+.+++ +-+.|+++|+.++++|.|+|.. ++---... | ...+..| .. ..++.++|..++ ++||.
T Consensus 13 vlsk~~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll 92 (423)
T PF14701_consen 13 VLSKWMGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLL 92 (423)
T ss_pred EhhhhcCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCce
Confidence 34443 5568999999999999999984 22111110 0 0111111 11 148999999985 68999
Q ss_pred EEEecCceeceecCCCCC-CcccccCCCeeeecCChhhHHHHHH
Q 003137 117 VNLRIGPYVCAEWNFGGF-PVWLKYIPGINFRTENGPFKAEMHK 159 (845)
Q Consensus 117 VilrpGPyicaEw~~GG~-P~WL~~~p~~~~R~~d~~y~~~~~~ 159 (845)
++... + |+.-.. =.||..+|+.-.-..+.++|+.+-.
T Consensus 93 ~~~Dv---V---~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA~e 130 (423)
T PF14701_consen 93 SMTDV---V---LNHTANNSPWLREHPEAGYNLENSPHLRPAYE 130 (423)
T ss_pred EEEEE---e---eccCcCCChHHHhCcccccCCCCCcchhhHHH
Confidence 77553 1 333322 4799999986444445566655443
No 161
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=35.18 E-value=1e+02 Score=35.05 Aligned_cols=82 Identities=21% Similarity=0.369 Sum_probs=59.2
Q ss_pred eeEEEccCcEEECCeEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeecc--chhHHHHH
Q 003137 31 GSVSYDSKAIAINGKRRILISGSIHYPRS-SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEG--NYDLVKFI 107 (845)
Q Consensus 31 ~~v~~d~~~~~idG~~~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl 107 (845)
..|.+. .+.+.|.++.++.| +=-+ .++.-.+.-+.+|++|.+.++.|+|- |+---|.|.| ..-|..+.
T Consensus 80 t~v~~~--~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~ 150 (335)
T PRK08673 80 TVVKVG--DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLA 150 (335)
T ss_pred CEEEEC--CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHH
Confidence 344443 36777788888888 3233 56667778888899999999999995 4333367765 56677777
Q ss_pred HHHHHcCCEEEEec
Q 003137 108 KLAKQAGLYVNLRI 121 (845)
Q Consensus 108 ~~a~~~GL~Vilrp 121 (845)
+.|++.||.++-.+
T Consensus 151 ~~~~~~Gl~v~tev 164 (335)
T PRK08673 151 EAREETGLPIVTEV 164 (335)
T ss_pred HHHHHcCCcEEEee
Confidence 77899999888764
No 162
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=34.91 E-value=55 Score=35.57 Aligned_cols=80 Identities=6% Similarity=-0.173 Sum_probs=52.5
Q ss_pred ceeEecCCCCeEEEEeeeccCCCC---CCCCC----ccCCceecCChHHHHHhhcCCCCceEEEecCCCCCCCCC-CCCc
Q 003137 764 KAHLMCGPGQKIKSIKFASFGTPE---GVCGS----YRQGSCHAFHSYDAFQRLCVGQNMCTVTVAPEMFGGDPC-PSIM 835 (845)
Q Consensus 764 ~~~L~C~~g~~I~~I~~A~yGr~~---~~C~~----~~~~~C~~~~s~~~v~~~C~Gk~~C~v~as~~~Fg~DPC-~gt~ 835 (845)
.+...|++...+ .+..+.+++.. .+|.. ...-.|.....+..+...|.+++.|++..++.-++ -+| ++-.
T Consensus 144 ~~~~~~~~~~~~-~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~ 221 (265)
T KOG4729|consen 144 PTDPPRSEIRLE-CREGRRLAVYSAVMKTSPQKDPETEIRHECVSSVLPQLLRQCHAKEGCTLKSDGIKGH-CRHGHLHK 221 (265)
T ss_pred CCCCccCcccch-hhhcccccccccccccCCCCcccCCCCceeecccchhhhhcccccCCceeecCCcccc-ccccceeE
Confidence 334444445333 45555566632 34542 12234555667788899999999999999988887 577 5566
Q ss_pred eeEEEEEEeC
Q 003137 836 KQLAVEAICG 845 (845)
Q Consensus 836 KyL~v~y~C~ 845 (845)
+|+.|.+.|.
T Consensus 222 ~~~~~n~e~~ 231 (265)
T KOG4729|consen 222 VYVTVTEEIF 231 (265)
T ss_pred EEEEeccccc
Confidence 8998888763
No 163
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=33.88 E-value=73 Score=37.04 Aligned_cols=55 Identities=24% Similarity=0.336 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCEEEE-ccccC---ccCCCCcee-----eeccchhHHHHHHHHHHcCCEEEEe
Q 003137 66 DLIQKAKDGGLDVIQT-YVFWN---GHEPSPGKY-----YFEGNYDLVKFIKLAKQAGLYVNLR 120 (845)
Q Consensus 66 ~~l~k~ka~GlN~V~~-yv~Wn---~hEp~~G~~-----df~g~~dl~~fl~~a~~~GL~Vilr 120 (845)
+.|.-+|.+|+++|-+ +++=+ .|--..=.| .|....|+.++++.|++.||+||+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 7899999999999964 34322 221100000 5777789999999999999999986
No 164
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=33.53 E-value=1.1e+02 Score=34.11 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=43.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc--cCcc---CC------------------------CCceeeeccchhHHHHHHHH
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVF--WNGH---EP------------------------SPGKYYFEGNYDLVKFIKLA 110 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~--Wn~h---Ep------------------------~~G~~df~g~~dl~~fl~~a 110 (845)
+.+..++.|+.|...++|++..++- |.+- .| ..|.|. ..++.++++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 7888999999999999999997543 3221 11 122332 35999999999
Q ss_pred HHcCCEEEEe
Q 003137 111 KQAGLYVNLR 120 (845)
Q Consensus 111 ~~~GL~Vilr 120 (845)
++.|+.||--
T Consensus 92 ~~rgI~vIPE 101 (326)
T cd06564 92 KDRGVNIIPE 101 (326)
T ss_pred HHcCCeEecc
Confidence 9999999965
No 165
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=33.26 E-value=75 Score=35.20 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=47.0
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccc----cCccCC----------------CCceeeeccchhHHHHHHHHHHcCCEEE
Q 003137 59 SSPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------SPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (845)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~~yv~----Wn~hEp----------------~~G~~df~g~~dl~~fl~~a~~~GL~Vi 118 (845)
.+.+..++.|+.|...++|++..++- |.+--+ ..|.|.- .|+.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 37788899999999999999999877 754311 1234444 499999999999999999
Q ss_pred Eec
Q 003137 119 LRI 121 (845)
Q Consensus 119 lrp 121 (845)
.-+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 753
No 166
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=32.93 E-value=83 Score=36.52 Aligned_cols=69 Identities=14% Similarity=0.288 Sum_probs=46.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceeceec
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVCAEW 129 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~GL~VilrpGPyicaEw 129 (845)
..+...+.++.+|+.|+-.=...+-..... ..+.|.|+.. -|..++++..++.|+++++..-|+|.-+-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 466778999999999997655544433222 4445555533 38999999999999999999888886553
No 167
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=32.89 E-value=1e+02 Score=37.98 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=51.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-ccc-----cCc--cCCCCceee---------eccchhHHHHHHHHHHcCCEEEEecC
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQT-YVF-----WNG--HEPSPGKYY---------FEGNYDLVKFIKLAKQAGLYVNLRIG 122 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~-yv~-----Wn~--hEp~~G~~d---------f~g~~dl~~fl~~a~~~GL~VilrpG 122 (845)
.+..|+ .++++|+++|-+ .++ |.. ---..|-|| |....|++++++.|+++||+||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 566675 688899999986 333 432 222345666 33347999999999999999997632
Q ss_pred --------ceeceecCCCCCCccc
Q 003137 123 --------PYVCAEWNFGGFPVWL 138 (845)
Q Consensus 123 --------PyicaEw~~GG~P~WL 138 (845)
||.-||++.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 3555666666666665
No 168
>PRK14566 triosephosphate isomerase; Provisional
Probab=32.46 E-value=1.2e+02 Score=33.23 Aligned_cols=75 Identities=17% Similarity=0.097 Sum_probs=48.0
Q ss_pred ECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003137 42 INGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 42 idG~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
++|.++.+.+=.+|+.-.-+-.=+=.-.++|++|++.|-+ -|..++..|.=+ +..+.+=++.|.++||.+|++.
T Consensus 62 ~~g~~i~v~AQnv~~~~~Ga~TGevS~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCv 135 (260)
T PRK14566 62 LDGSLVRMGAQNVSQHDFGAYTGEVSGQMLKDAGCRYVII-----GHSERRRMYGET-SNIVAEKFAAAQKHGLTPILCV 135 (260)
T ss_pred ccCceEEEEecccccccCCCccCccCHHHHHHcCCCEEEE-----CcccccCCCCcC-HHHHHHHHHHHHHCCCEEEEEc
Confidence 4454555444444442211111122356899999988887 666666666533 4567778889999999999998
Q ss_pred C
Q 003137 122 G 122 (845)
Q Consensus 122 G 122 (845)
|
T Consensus 136 G 136 (260)
T PRK14566 136 G 136 (260)
T ss_pred C
Confidence 7
No 169
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=32.26 E-value=86 Score=35.41 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=54.0
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceec
Q 003137 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (845)
Q Consensus 54 ~Hy~r~---~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~GL~VilrpGPyic 126 (845)
+|..|. ..++.++.++++++.+|-.=.+++-|.+++ .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 667788999999999987555555554443 3466776643 37899999999999999998888887
No 170
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=31.62 E-value=72 Score=34.76 Aligned_cols=52 Identities=27% Similarity=0.264 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCCCEEEEccccC--ccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 003137 65 PDLIQKAKDGGLDVIQTYVFWN--GHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (845)
Q Consensus 65 ~~~l~k~ka~GlN~V~~yv~Wn--~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 119 (845)
++.+++||++|++.|...+--+ .++...+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 6788999999999988765511 112222234444 667789999999998653
No 171
>PRK09267 flavodoxin FldA; Validated
Probab=31.46 E-value=2.5e+02 Score=27.92 Aligned_cols=74 Identities=8% Similarity=0.077 Sum_probs=48.0
Q ss_pred ECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 003137 42 INGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (845)
Q Consensus 42 idG~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi 118 (845)
+..-..++++...|+...++..|.+-+++++...++-..+.+|= ......-.-.| ..-+..+-+++.+.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 34456688999999878778899999998887777766666663 21111100111 2236667777888897655
No 172
>PRK09875 putative hydrolase; Provisional
Probab=31.29 E-value=2.2e+02 Score=31.69 Aligned_cols=89 Identities=10% Similarity=0.065 Sum_probs=58.1
Q ss_pred eEEEccCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHH
Q 003137 32 SVSYDSKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAK 111 (845)
Q Consensus 32 ~v~~d~~~~~idG~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~ 111 (845)
.+++-+.+++++..++. +......-..+.-...|+.+|++|.+||==-.+.. -.||...+.++++
T Consensus 7 G~tl~HEHl~~~~~~~~---~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g------------~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFK---NNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRY------------MGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChhhc---CCcccccccHHHHHHHHHHHHHhCCCeEEecCCCc------------cCcCHHHHHHHHH
Confidence 45666667776653311 11111111344456688999999998873211111 2479999999999
Q ss_pred HcCCEEEEecCceeceecCCCCCCccccc
Q 003137 112 QAGLYVNLRIGPYVCAEWNFGGFPVWLKY 140 (845)
Q Consensus 112 ~~GL~VilrpGPyicaEw~~GG~P~WL~~ 140 (845)
+-|+.||.-.|-|.-.. +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999886332 6888874
No 173
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=30.94 E-value=97 Score=32.66 Aligned_cols=45 Identities=22% Similarity=0.135 Sum_probs=36.0
Q ss_pred HHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003137 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 67 ~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
...++|++|++.|-+ -|..++ |..+ |+.+=++.|.++||.+|++.
T Consensus 73 S~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 356899999988777 555555 5555 69999999999999999986
No 174
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.56 E-value=66 Score=34.48 Aligned_cols=56 Identities=14% Similarity=0.025 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCCC----ceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP----GKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~----G~~df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
+.+++.++.++++|..+|.+ |..+.... -.+... ...|.++.++|+++|+.+.+-+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEec
Confidence 35667789999999999966 32232211 112211 1368999999999999999886
No 175
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.32 E-value=92 Score=35.20 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=49.6
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEcc----------ccCccCCC---------Cceeeecc---chhHHHHHH
Q 003137 54 IHYPRS---SPEMWPDLIQKAKDGGLDVIQTYV----------FWNGHEPS---------PGKYYFEG---NYDLVKFIK 108 (845)
Q Consensus 54 ~Hy~r~---~~~~W~~~l~k~ka~GlN~V~~yv----------~Wn~hEp~---------~G~~df~g---~~dl~~fl~ 108 (845)
+|..|. ..+.-++.++++++.||..=-+++ .|+-..-. -+.++|.. --|..++|+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 565664 456678899999999997555443 24422211 13333431 127999999
Q ss_pred HHHHcCCEEEEecCceec
Q 003137 109 LAKQAGLYVNLRIGPYVC 126 (845)
Q Consensus 109 ~a~~~GL~VilrpGPyic 126 (845)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999998888875
No 176
>PLN02784 alpha-amylase
Probab=30.28 E-value=1e+02 Score=39.15 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCCEEEEccccCccCC---CCce-ee----eccchhHHHHHHHHHHcCCEEEEec
Q 003137 65 PDLIQKAKDGGLDVIQTYVFWNGHEP---SPGK-YY----FEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 65 ~~~l~k~ka~GlN~V~~yv~Wn~hEp---~~G~-~d----f~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
.+.+..++++|+++|-+.=+.....+ .+.. |+ |....+|.++|+.|+++||.||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45788889999999997533221111 1111 22 3345799999999999999999874
No 177
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=29.28 E-value=73 Score=36.65 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=54.3
Q ss_pred EEEEeeCCC-CCcccHHHHHHHHHHC-CCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 003137 50 ISGSIHYPR-SSPEMWPDLIQKAKDG-GLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (845)
Q Consensus 50 ~sG~~Hy~r-~~~~~W~~~l~k~ka~-GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr 120 (845)
.+=|+.|+- .|.+.|+-+|..+.++ -=||+.+-| =|=+.|--++|+-. .|.+.+++|+++||-||-.
T Consensus 170 ~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivv-iNP~NPcGnVys~~---HL~kiae~A~klgi~vIaD 238 (447)
T KOG0259|consen 170 SGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVV-INPNNPCGNVYSED---HLKKIAETAKKLGIMVIAD 238 (447)
T ss_pred cCceeEeecccCcccceechHHHHHhhccCeeEEEE-eCCCCCCcccccHH---HHHHHHHHHHHhCCeEEeh
Confidence 333454444 5889999999999987 788988854 47788888899987 8999999999999998864
No 178
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=29.24 E-value=1.9e+02 Score=31.55 Aligned_cols=108 Identities=18% Similarity=0.250 Sum_probs=67.3
Q ss_pred eEEEEEEeeCCCCCccc-H---HHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003137 47 RILISGSIHYPRSSPEM-W---PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (845)
Q Consensus 47 ~~~~sG~~Hy~r~~~~~-W---~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpG 122 (845)
.+-+++..|+.+.|... - .++|++-.++|.+.+-|=.+ ||.+ .+.+|++.|++.|+.+=+.+|
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 46788999887654332 1 24566667899998888443 4444 789999999999766444444
Q ss_pred --ceec-------eecCCCCCCcccccC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003137 123 --PYVC-------AEWNFGGFPVWLKYI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (845)
Q Consensus 123 --Pyic-------aEw~~GG~P~WL~~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 169 (845)
|-.. ++|..-.+|.|+.+. .. ...+....+++--++..++++.+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~~--~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLEK--YDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3222 235566678888762 11 111223455666677777777776
No 179
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=29.19 E-value=5.5e+02 Score=26.98 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=31.1
Q ss_pred HHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 003137 65 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (845)
Q Consensus 65 ~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi 118 (845)
++.++.|+++|++++.+ =|-|| |||. ..-|.+.++..++.|+..+
T Consensus 67 ~~~~~~L~~~G~d~~tl---aNNH~-----fD~G-~~gl~~t~~~l~~~~i~~~ 111 (239)
T cd07381 67 PEVADALKAAGFDVVSL---ANNHT-----LDYG-EEGLLDTLDALDEAGIAHA 111 (239)
T ss_pred HHHHHHHHHhCCCEEEc---ccccc-----cccc-hHHHHHHHHHHHHcCCcee
Confidence 34577999999999988 23343 5554 2346677777788888754
No 180
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=29.16 E-value=2.3e+02 Score=32.10 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=45.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccc----cCccCC------CCceeeec---cchhHHHHHHHHHHcCCEEEEe
Q 003137 59 SSPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------SPGKYYFE---GNYDLVKFIKLAKQAGLYVNLR 120 (845)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~~yv~----Wn~hEp------~~G~~df~---g~~dl~~fl~~a~~~GL~Vilr 120 (845)
.+.+..++.|+.|....+|+...++- |.+--+ +.|.|.-. -..|+.++++.|++.|+.||.-
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEe
Confidence 36788999999999999999998763 554322 12322211 1349999999999999999976
No 181
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=29.10 E-value=79 Score=36.65 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=47.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCE-EEEecCceeceecCCCCCCc
Q 003137 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLY-VNLRIGPYVCAEWNFGGFPV 136 (845)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~-VilrpGPyicaEw~~GG~P~ 136 (845)
...+.-+..|+.+|+.|+|+|=+++.=.---+.+-.|.= -..|-...++++.+.|.. .+|..| ||+|.
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~g 258 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG---------GGFPG 258 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC---------CCCCC
Confidence 455677889999999999999997664432222222221 135677788899999998 558776 78863
No 182
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.51 E-value=2.5e+02 Score=30.21 Aligned_cols=103 Identities=18% Similarity=0.143 Sum_probs=56.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccccCccCCC-Cceeeec----cchhHHHHHHHHHHcCCEEEEecCceeceecCCCC
Q 003137 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGKYYFE----GNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGG 133 (845)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~-~G~~df~----g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG 133 (845)
+.++.-+..-+.+++.|+..+.+-. ..|.+. ++.-|=. ....+.+.|++|++.|..+|.-+ |
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~-----------~ 120 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMCL--SAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLA-----------G 120 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEec--ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC-----------C
Confidence 4566677777888899998765411 112111 1111100 12357889999999999876422 1
Q ss_pred CCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEeccccccc
Q 003137 134 FPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYG 191 (845)
Q Consensus 134 ~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 191 (845)
.+.|.. ..++...+.+...++.|++..+++ | |.+.|||-.+
T Consensus 121 ~~~~~~--------~~~~~~~~~~~~~l~~l~~~A~~~-------G--V~i~iE~~~~ 161 (283)
T PRK13209 121 YDVYYE--------QANNETRRRFIDGLKESVELASRA-------S--VTLAFEIMDT 161 (283)
T ss_pred cccccc--------ccHHHHHHHHHHHHHHHHHHHHHh-------C--CEEEEeecCC
Confidence 122211 112334455555667777777633 3 3456788543
No 183
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=28.04 E-value=74 Score=36.12 Aligned_cols=65 Identities=9% Similarity=0.033 Sum_probs=45.4
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003137 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 54 ~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
-++ |.+...=....+.++++|-++|.+.|+|.-.++. .-+-.-..+|.++.+.|+++||-+++-+
T Consensus 99 ~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 99 APG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 344 5544443334778999999999999999954331 0011223489999999999999988853
No 184
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=27.90 E-value=1.8e+02 Score=24.23 Aligned_cols=44 Identities=32% Similarity=0.397 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 003137 63 MWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (845)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 119 (845)
..++.++++|+.|++.|.+- -|. ++. ...+|.+++++.||.||.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEE
Confidence 46789999999999998762 111 233 367888999999998864
No 185
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=27.77 E-value=27 Score=31.10 Aligned_cols=37 Identities=32% Similarity=0.643 Sum_probs=26.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHc
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQA 113 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~ 113 (845)
....|-.-++.+-. .||.|-.|||. +|.+||++|.|-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 45568777776654 48999999999 899999999873
No 186
>PRK10426 alpha-glucosidase; Provisional
Probab=27.67 E-value=3.4e+02 Score=33.56 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHCCCCEEEEcc-ccCccCCC----Cc--eeeeccc--hhHHHHHHHHHHcCCEEEEecCceec
Q 003137 63 MWPDLIQKAKDGGLDVIQTYV-FWNGHEPS----PG--KYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (845)
Q Consensus 63 ~W~~~l~k~ka~GlN~V~~yv-~Wn~hEp~----~G--~~df~g~--~dl~~fl~~a~~~GL~VilrpGPyic 126 (845)
.-++.++++|+.||-+=.+++ .|...... .. .|.|+.. -|..++++..+++|+++++..=|+|+
T Consensus 222 ~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~ 294 (635)
T PRK10426 222 VVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLA 294 (635)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccC
Confidence 346789999999986544433 36432211 11 1233322 38899999999999999998877774
No 187
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=27.61 E-value=1.6e+02 Score=28.85 Aligned_cols=89 Identities=12% Similarity=0.217 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeec---cchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCc
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFE---GNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPV 136 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~---g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~ 136 (845)
.+...+..++.++++|+..+-+|.....+ ...|... |..|-..-++.|++.|+. . |-|-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~---~~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~I 97 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRE---TSDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPI 97 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-----------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEeccccc---ccccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEE
Confidence 46888999999999999999998877222 2222222 668899999999999983 1 3333
Q ss_pred ccccCCCeeeecCChhhHHHHHHHHHHHHHHHHh
Q 003137 137 WLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKA 170 (845)
Q Consensus 137 WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~ 170 (845)
++--+-+ ..+..+...+..|++.+.+.|..
T Consensus 98 YfavD~d----~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 98 YFAVDYD----ATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp EEE--TS-----B-HH-------HHHHHHHHHGG
T ss_pred EEEeecC----CCchhhhhHHHHHHHHHHHHHhh
Confidence 4432211 24566777888888888888874
No 188
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=27.17 E-value=84 Score=35.04 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=41.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccc----cCccCC------CCc---------eeeeccchhHHHHHHHHHHcCCEEEEe
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------SPG---------KYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~----Wn~hEp------~~G---------~~df~g~~dl~~fl~~a~~~GL~Vilr 120 (845)
+.+.-++.|+.|...++|++..++- |.+.-+ +.| .|.- .|+.++++.|++.|+.||.-
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceeee
Confidence 6778899999999999999998875 433211 122 3333 49999999999999999965
No 189
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=26.94 E-value=53 Score=34.56 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=14.2
Q ss_pred ceEEEEECCeeccccc
Q 003137 648 GKGQVWVNGQSIGRHW 663 (845)
Q Consensus 648 gKG~vwVNG~nlGRYW 663 (845)
.+|.|||||++|.|.=
T Consensus 55 t~G~i~~~~~dl~~l~ 70 (223)
T COG2884 55 TRGKILVNGHDLSRLK 70 (223)
T ss_pred CCceEEECCeeccccc
Confidence 5699999999999883
No 190
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.80 E-value=92 Score=33.45 Aligned_cols=59 Identities=20% Similarity=0.064 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCCC-ceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-GKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~-G~~df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
+.+++.++.++++|.+.|.+.-+-...++.. -.++. -...|.+++++|+++|+.+.+.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEe
Confidence 4567889999999999998631100011111 11111 11468888999999999999886
No 191
>PLN02561 triosephosphate isomerase
Probab=26.79 E-value=1.3e+02 Score=32.89 Aligned_cols=50 Identities=18% Similarity=0.075 Sum_probs=40.0
Q ss_pred HHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003137 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (845)
Q Consensus 67 ~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpG 122 (845)
...++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 80 S~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL-----GHSERRALLGES-NEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCccCCC-hHHHHHHHHHHHHCcCEEEEEcC
Confidence 456899999998888 676666666533 56777888889999999999987
No 192
>PRK15492 triosephosphate isomerase; Provisional
Probab=26.50 E-value=1.3e+02 Score=32.90 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=39.5
Q ss_pred HHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003137 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (845)
Q Consensus 67 ~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpG 122 (845)
.-.++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 86 Sa~mLkd~G~~~vii-----GHSERR~~f~Et-d~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 86 SPLMLKEIGTQLVMI-----GHSERRHKFGET-DQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CHHHHHHcCCCEEEE-----CccccccccCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999998888 676666666533 45667788889999999999987
No 193
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.97 E-value=24 Score=36.13 Aligned_cols=67 Identities=27% Similarity=0.410 Sum_probs=44.1
Q ss_pred EEEEEEeeCCCC---CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 003137 48 ILISGSIHYPRS---SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (845)
Q Consensus 48 ~~~sG~~Hy~r~---~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr 120 (845)
.+-+|--.|.|+ .|-.-+ +-+.++|++.+-+-. ...--.--|||-...+|.+|+++|+++||.+-|.
T Consensus 117 VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMvDT---aiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 117 VVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMVDT---AIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred EEeccccchhhccCcCccccH---HHHHhcCCCEEEEec---ccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 345666667775 343333 346778888654311 1112233589988889999999999999998774
No 194
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=25.96 E-value=1.3e+02 Score=33.33 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=42.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCC--CCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP--SPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp--~~G~~df~g~~dl~~fl~~a~~~GL~Vilr 120 (845)
.++..++.++++++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+++++|+++|+.|.+-
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H 179 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAH 179 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEE
Confidence 4677899999999999999999875432111 12211222 237899999999999988775
No 195
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.88 E-value=1.3e+02 Score=33.74 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=46.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcc----ccCccC---C---CCc----eeeeccchhHHHHHHHHHHcCCEEEEec
Q 003137 59 SSPEMWPDLIQKAKDGGLDVIQTYV----FWNGHE---P---SPG----KYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~~yv----~Wn~hE---p---~~G----~~df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
.+.+..++.|+.|...++|+...++ -|-+-- | +.| .|. ..|+.++++.|++.|+.||.-+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEee
Confidence 4688999999999999999999987 475421 1 122 233 3499999999999999999753
No 196
>PTZ00333 triosephosphate isomerase; Provisional
Probab=25.83 E-value=1.4e+02 Score=32.63 Aligned_cols=49 Identities=29% Similarity=0.247 Sum_probs=40.6
Q ss_pred HHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003137 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (845)
Q Consensus 68 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpG 122 (845)
-.++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 82 ~~mL~d~G~~~vii-----GHSERR~~f~Et-d~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL-----GHSERRQYFGET-NEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEcC
Confidence 46899999999888 677777666433 56888999999999999999987
No 197
>PLN02429 triosephosphate isomerase
Probab=25.38 E-value=1.1e+02 Score=34.43 Aligned_cols=46 Identities=28% Similarity=0.251 Sum_probs=34.0
Q ss_pred HHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHH----HHHcCCEEEEecC
Q 003137 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKL----AKQAGLYVNLRIG 122 (845)
Q Consensus 67 ~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~----a~~~GL~VilrpG 122 (845)
...++|++|++.|-+ -|..++-.|. ..++++.. |.++||.+|++.|
T Consensus 139 Sa~mLkd~Gv~~Vii-----GHSERR~~f~-----Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 139 SVEQLKDLGCKWVIL-----GHSERRHVIG-----EKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred CHHHHHHcCCCEEEe-----CccccCCCCC-----cCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 345889999988877 5666655554 33555555 9999999999987
No 198
>PRK14565 triosephosphate isomerase; Provisional
Probab=25.33 E-value=1.1e+02 Score=32.88 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=36.4
Q ss_pred HHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003137 67 LIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (845)
Q Consensus 67 ~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpG 122 (845)
...++|++|++.|-+ -|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 77 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 77 SAKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 456899999988887 566666555433 23344444889999999999987
No 199
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=25.10 E-value=1.4e+02 Score=35.19 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=45.7
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 003137 54 IHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (845)
Q Consensus 54 ~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilr 120 (845)
..|.+.|.+.-++.++++.+.|++.|+++++-|.. +++...++.|+++|+.|.+.
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEE
Confidence 45666777888889999999999999998876653 25888999999999988665
No 200
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=24.83 E-value=4.4e+02 Score=29.16 Aligned_cols=119 Identities=16% Similarity=0.091 Sum_probs=79.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccc
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLK 139 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~ 139 (845)
.-+..+.+|+.++.-+. .|++|- +.-.-|+..+.+|.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 45678889999999887 999974 122358888999999999999874 332
Q ss_pred cCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEecccccccCcccccCCCCHHHHHHHHHHHHhcCCCc
Q 003137 140 YIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRSYTRWAAKMAVGLGTGV 219 (845)
Q Consensus 140 ~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 219 (845)
. ++ . ..+++ .++..+. +. ..=-.|..|=|-||-=...+.-...-.+|+.-.|.+++++|.++
T Consensus 111 d--d~-------~--~~~~~---til~ay~--~~--~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 111 D--DI-------H--DAVEK---TILSAYL--PY--NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred c--ch-------h--hhHHH---HHHHHHh--cc--CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 11 1 12222 3344444 21 11236888899999543211111245689999999999999999
Q ss_pred ceeecCC
Q 003137 220 PWIMCKQ 226 (845)
Q Consensus 220 p~~~~~~ 226 (845)
|..+.++
T Consensus 173 pV~T~ds 179 (305)
T COG5309 173 PVTTVDS 179 (305)
T ss_pred ceeeccc
Confidence 9888665
No 201
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=24.33 E-value=1e+02 Score=32.89 Aligned_cols=60 Identities=12% Similarity=-0.072 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEec
Q 003137 62 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRI 121 (845)
Q Consensus 62 ~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vilrp 121 (845)
+..++.++.++++|..+|.+...+.--...+.+..-.-...|.++.++|+++|+.+.+-|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 446788899999999999764333211111111111112467888889999999999987
No 202
>PRK14567 triosephosphate isomerase; Provisional
Probab=23.61 E-value=1.6e+02 Score=32.09 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=38.8
Q ss_pred HHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003137 68 IQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (845)
Q Consensus 68 l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpG 122 (845)
-.++|++|++.|-+ .|..++-.|.=+ +..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yvii-----GHSERR~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-----GHSERRSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 45899999998888 676666666533 45677788889999999999987
No 203
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.25 E-value=1.5e+02 Score=23.86 Aligned_cols=55 Identities=16% Similarity=0.345 Sum_probs=39.0
Q ss_pred cccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEE
Q 003137 61 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYV 117 (845)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~V 117 (845)
|..-.+.+.-+.+.|+|.+.++. +...+.....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 44456778889999999988876 3333234455555533 4889999999999765
No 204
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.14 E-value=1.9e+02 Score=31.69 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=40.8
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEE
Q 003137 59 SSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNL 119 (845)
Q Consensus 59 ~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vil 119 (845)
.|.+.=+++++++.+.|+..|+++++.+-. ..+...++.|+++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~~------------~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALNDV------------RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCChH------------HHHHHHHHHHHHCCCeEEE
Confidence 455567889999999999999998886651 3789999999999998775
No 205
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=22.81 E-value=73 Score=40.32 Aligned_cols=76 Identities=24% Similarity=0.404 Sum_probs=49.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEE------------ccccCccCC------CCceeeeccchhHHHHHHHHHH-cCCEEEEe
Q 003137 60 SPEMWPDLIQKAKDGGLDVIQT------------YVFWNGHEP------SPGKYYFEGNYDLVKFIKLAKQ-AGLYVNLR 120 (845)
Q Consensus 60 ~~~~W~~~l~k~ka~GlN~V~~------------yv~Wn~hEp------~~G~~df~g~~dl~~fl~~a~~-~GL~Vilr 120 (845)
|-+.|+.+|+++|+.|.|+|.. |-.-+.||- .-++|.|+ |+..+++.+++ -++..|-.
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeeeh
Confidence 6689999999999999999983 322333332 23578898 89999998865 46554432
Q ss_pred cCceeceecCC-CCCCcccccCCCe
Q 003137 121 IGPYVCAEWNF-GGFPVWLKYIPGI 144 (845)
Q Consensus 121 pGPyicaEw~~-GG~P~WL~~~p~~ 144 (845)
. + |+. .-=-.||+++|+.
T Consensus 217 v---V---~NHtAnns~WlleHPea 235 (1521)
T KOG3625|consen 217 V---V---YNHTANNSKWLLEHPEA 235 (1521)
T ss_pred h---h---hhccccCCchhHhCchh
Confidence 2 0 111 1124688777753
No 206
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=22.41 E-value=68 Score=31.37 Aligned_cols=53 Identities=28% Similarity=0.458 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhc
Q 003137 101 YDLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAE 171 (845)
Q Consensus 101 ~dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~ 171 (845)
.||.-||+.|++.|+.|++-.-| +++.|- . .-|+ =.+.-+.++++|-.+++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wy--------d-ytG~--------~~~~r~~~y~kI~~~~~~~ 88 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWY--------D-YTGL--------SKEMRQEYYKKIKYQLKSQ 88 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHH--------H-HTT----------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHH--------H-HhCC--------CHHHHHHHHHHHHHHHHHC
Confidence 49999999999999998866545 555551 1 1111 0244467788888888744
No 207
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=22.06 E-value=4.4e+02 Score=30.87 Aligned_cols=84 Identities=19% Similarity=0.134 Sum_probs=58.4
Q ss_pred CcEEECCeEeEEEEEEeeCCCCC---cccHHHHHHHHHHCCCCE--E--EEccccCccCCCCceeeeccchhHHHHHHHH
Q 003137 38 KAIAINGKRRILISGSIHYPRSS---PEMWPDLIQKAKDGGLDV--I--QTYVFWNGHEPSPGKYYFEGNYDLVKFIKLA 110 (845)
Q Consensus 38 ~~~~idG~~~~~~sG~~Hy~r~~---~~~W~~~l~k~ka~GlN~--V--~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a 110 (845)
++..+++.-|+|+.++-+-++.+ ++.-+.--+.+++.|++. | .....-|+-.|.+..++++ ..-+.+-|+.|
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekS-v~~~~~eL~rA 227 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKS-YDAFLDDLQRC 227 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHH-HHHHHHHHHHH
Confidence 45667788999998877766543 334444556778888762 3 3322278888888888877 34577778889
Q ss_pred HHcCCE-EEEecC
Q 003137 111 KQAGLY-VNLRIG 122 (845)
Q Consensus 111 ~~~GL~-VilrpG 122 (845)
++.|.. |++-||
T Consensus 228 ~~LGa~~VV~HPG 240 (413)
T PTZ00372 228 EQLGIKLYNFHPG 240 (413)
T ss_pred HHcCCCEEEECCC
Confidence 999998 667777
No 208
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=21.69 E-value=2.9e+02 Score=26.12 Aligned_cols=64 Identities=13% Similarity=0.286 Sum_probs=0.0
Q ss_pred eEEEEEEecCCCCcccccCCCcceEEecCcCeEEEEEECCEEEEEEecccCCCeeEEEeeeeccCC-CcEEEEE
Q 003137 475 YLWYMTDVKIDPSEGFLRSGNYPVLTVMSAGHALHVFVNGQLAGTAYGSLEFPKLTFTEGVNMRAG-INKIALL 547 (845)
Q Consensus 475 yl~Yrt~~~~~~~~~~~~~~~~~~L~i~~~~D~a~VfvNg~~vGs~~~~~~~~~~~~~~~~~l~~g-~n~L~IL 547 (845)
.+.+++.|..+.++.. ++.+ ...|.+.+||||+.+-...+... ........+.|.+| .+.|.|.
T Consensus 45 ~~~~~g~i~~~~~G~y-------~f~~-~~~~~~~l~Idg~~vid~~~~~~-~~~~~~~~v~l~~g~~~~i~v~ 109 (136)
T smart00758 45 SVRWTGYLKPPEDGEY-------TFSI-TSDDGARLWIDGKLVIDNWGKHE-ARPSTSSTLYLLAGGTYPIRIE 109 (136)
T ss_pred EEEEEEEEECCCCccE-------EEEE-EcCCcEEEEECCcEEEcCCccCC-CccccceeEEEeCCcEEEEEEE
No 209
>PLN02389 biotin synthase
Probab=21.49 E-value=1.2e+02 Score=34.93 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=33.4
Q ss_pred HHHHHHHHHHCCCCEEEEccc--cCccCCCCceeeeccchhHHHHHHHHHHcCCEEE
Q 003137 64 WPDLIQKAKDGGLDVIQTYVF--WNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVN 118 (845)
Q Consensus 64 W~~~l~k~ka~GlN~V~~yv~--Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~Vi 118 (845)
=++.++++|++|++.+..-+- ...+...-..-+|+ +..+.++.|++.||.|-
T Consensus 177 ~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v~ 230 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISVC 230 (379)
T ss_pred CHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeEe
Confidence 467899999999998766221 21111111112444 67788999999999864
No 210
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=21.12 E-value=1.3e+02 Score=32.53 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=32.5
Q ss_pred EECCeEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEE
Q 003137 41 AINGKRRILISGSIHYPRS-SPEMWPDLIQKAKDGGLDVIQT 81 (845)
Q Consensus 41 ~idG~~~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~GlN~V~~ 81 (845)
.+.|+++..+.|..|+... ...+-+.-++.||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 4589999999999997654 4444478899999999986644
No 211
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=21.01 E-value=2.8e+02 Score=34.05 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=74.1
Q ss_pred CeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecCc
Q 003137 44 GKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIGP 123 (845)
Q Consensus 44 G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpGP 123 (845)
+++-+.+++..|+.+.+.+.=-++|++-.++|.+.+-|=.+++. + .+.+|++.+++.++.||..+-|
T Consensus 460 ~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------~---~~~~~~~~~~~~~vpIi~GImP 526 (612)
T PRK08645 460 KKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------E---LIEELLEATKHLGVPIFIGIMP 526 (612)
T ss_pred CCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------H---HHHHHHHHHhcCCCCEEEEeee
Confidence 34557889999877665444445666667899999999666544 3 6888999888778888877666
Q ss_pred eece--------ecCCCCCCcccccC-CCeeeecCChhhHHHHHHHHHHHHHHHH
Q 003137 124 YVCA--------EWNFGGFPVWLKYI-PGINFRTENGPFKAEMHKFTKKIVDMMK 169 (845)
Q Consensus 124 yica--------Ew~~GG~P~WL~~~-p~~~~R~~d~~y~~~~~~~~~~l~~~l~ 169 (845)
.... +|..-=+|.|+.+. .. .. +...++++--++..++++.+.
T Consensus 527 i~s~k~~~~~~~~~~Gv~vP~~l~~~l~~--~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 527 LVSYRNAEFLHNEVPGITLPEEIRERMRA--VE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred cCCHHHHHHHHhCCCCCCCCHHHHHHHHh--cC-CchHHHHHHHHHHHHHHHHHH
Confidence 4433 24444568888761 11 11 223567777777777777776
No 212
>PRK11372 lysozyme inhibitor; Provisional
Probab=20.92 E-value=1.9e+02 Score=27.45 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=13.2
Q ss_pred cchhhHHHHHHHHHhcCCC
Q 003137 7 LGMCNVLLILLLGCSGLFA 25 (845)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (845)
|.||.++++++.++++.++
T Consensus 1 ~~mk~ll~~~~~~lL~gCs 19 (109)
T PRK11372 1 MSMKKLLIICLPVLLTGCS 19 (109)
T ss_pred CchHHHHHHHHHHHHHHhc
Confidence 5799977777666665554
No 213
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=20.92 E-value=2.6e+02 Score=30.49 Aligned_cols=52 Identities=25% Similarity=0.368 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHcCCEEEEecCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHH
Q 003137 102 DLVKFIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFT 161 (845)
Q Consensus 102 dl~~fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~ 161 (845)
...+++..|++.|-..+|-| |--.||+|.|... ++.+-+..+.=+++.++|+
T Consensus 38 K~~~~~~Eaa~~Ga~LV~fP------EAfiGGYPrg~~F--g~~~G~r~~eGR~ef~kY~ 89 (337)
T KOG0805|consen 38 KAEKYIVEAASKGAELVLFP------EAFIGGYPRGFRF--GLAVGVRNEEGRDEFRKYH 89 (337)
T ss_pred HHHHHHHHHhcCCceEEEee------hHhccCCCCccee--eEEEeecchhhhHHHHHHH
Confidence 46788899999999999988 5556999999875 3333333343344444544
No 214
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.90 E-value=1.8e+02 Score=34.27 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=50.6
Q ss_pred cCcEEECCeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccc----cCccC---C-------------------
Q 003137 37 SKAIAINGKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVF----WNGHE---P------------------- 90 (845)
Q Consensus 37 ~~~~~idG~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~----Wn~hE---p------------------- 90 (845)
-|.|+||=-| |++ +.+.-++.|+.|....+|+...++- |-+-- |
T Consensus 7 ~RGlmLDvaR--------~f~--~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~ 76 (445)
T cd06569 7 YRGMHLDVAR--------NFH--SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCL 76 (445)
T ss_pred ccceeeeccC--------CCC--CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccc
Confidence 3555555443 443 7888999999999999999998863 43210 0
Q ss_pred -------------CCceeeeccchhHHHHHHHHHHcCCEEEEe
Q 003137 91 -------------SPGKYYFEGNYDLVKFIKLAKQAGLYVNLR 120 (845)
Q Consensus 91 -------------~~G~~df~g~~dl~~fl~~a~~~GL~Vilr 120 (845)
..|.|. ..|+.++++.|++.|+.||.-
T Consensus 77 ~~~~~~~~~~~~~~~g~YT---~~di~eiv~yA~~rgI~VIPE 116 (445)
T cd06569 77 LPQLGSGPDTNNSGSGYYS---RADYIEILKYAKARHIEVIPE 116 (445)
T ss_pred ccccccCcccCcccCCccC---HHHHHHHHHHHHHcCCEEEEc
Confidence 012222 359999999999999999965
No 215
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.78 E-value=2e+02 Score=31.43 Aligned_cols=72 Identities=22% Similarity=0.124 Sum_probs=45.3
Q ss_pred CeEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHHHHHHHHHcCCEEEEecC
Q 003137 44 GKRRILISGSIHYPRSSPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLAKQAGLYVNLRIG 122 (845)
Q Consensus 44 G~~~~~~sG~~Hy~r~~~~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~~a~~~GL~VilrpG 122 (845)
| ++.+.+=.+|+...-.=.=+-...++|++|++.|-+ -|..++-.|+=+ +..+.+=++.|.++||.+||+.|
T Consensus 58 g-~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~vii-----GHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 58 G-NIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLI-----GHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred C-CceEEeccCCcccCCCccCcCCHHHHHHcCCCEEEE-----Cccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 5 444444445553321111122356899999988887 565555555433 34566778889999999999987
No 216
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=20.51 E-value=1.4e+02 Score=33.76 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=27.7
Q ss_pred ccCcEEECCeEeEEEEEEeeCCCC-CcccHHHHH-HHHHHCCCCEEEE
Q 003137 36 DSKAIAINGKRRILISGSIHYPRS-SPEMWPDLI-QKAKDGGLDVIQT 81 (845)
Q Consensus 36 d~~~~~idG~~~~~~sG~~Hy~r~-~~~~W~~~l-~k~ka~GlN~V~~ 81 (845)
|.+++.|||||+++| +.+.-+ ....+-+.+ +.+|++|+.-|-+
T Consensus 150 D~rYikVdGKPv~~I---y~p~~~pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLI---YRPGDIPDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEE---ECcccccCHHHHHHHHHHHHHHcCCCceEE
Confidence 788999999999988 333222 222333333 4668889885554
No 217
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=20.50 E-value=4.3e+02 Score=29.74 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=84.7
Q ss_pred ceeEEEccCcEEECCeEeEEEEEEee-CCCCCc---ccHHHHHHHHHHCCCCEEEEccccCccCCCCceeeeccchhHHH
Q 003137 30 EGSVSYDSKAIAINGKRRILISGSIH-YPRSSP---EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVK 105 (845)
Q Consensus 30 ~~~v~~d~~~~~idG~~~~~~sG~~H-y~r~~~---~~W~~~l~k~ka~GlN~V~~yv~Wn~hEp~~G~~df~g~~dl~~ 105 (845)
...|++-+.++.+|. .= +-++++ -+-... ..-..++...++.|.+||=.--.= .-.||..+
T Consensus 15 ~lGvTl~HEHl~~~~--~~-~~~~~~~d~~~~~~~~a~~~~e~~~~~a~Gg~TIVD~T~~------------~~GRdv~~ 79 (316)
T COG1735 15 DLGVTLMHEHLFIDP--YE-IAGGLKNDPYDEDDEVALAIAELKRLMARGGQTIVDATNI------------GIGRDVLK 79 (316)
T ss_pred Hccceeehhhhccch--HH-HhhcCCCCcccccHHHHHHHHHHHHHHHcCCCeEeeCCcc------------ccCcCHHH
Confidence 356777777777775 00 111222 111111 112345677777898887542211 11379999
Q ss_pred HHHHHHHcCCEEEEecCceeceecCCCCCCcccccCCCeeeecCChhhHHHHHHHHHHHHHHHHhcccccccCCceEEec
Q 003137 106 FIKLAKQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTENGPFKAEMHKFTKKIVDMMKAERLFESQGGPIILSQ 185 (845)
Q Consensus 106 fl~~a~~~GL~VilrpGPyicaEw~~GG~P~WL~~~p~~~~R~~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 185 (845)
..+.+++-||.+|...|+|.-+.|+ .|+...+ ++.+...+.+.++. +=.|+=|..=
T Consensus 80 m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~--------------i~~~ae~~v~ei~~-----Gi~gT~ikAG 135 (316)
T COG1735 80 MRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP--------------IEELAEFVVKEIEE-----GIAGTGIKAG 135 (316)
T ss_pred HHHHHHHhCCcEEEeccccccccch-----hHHhhCC--------------HHHHHHHHHHHHHh-----cccCCccccc
Confidence 9999999999999999999988874 6776533 34444455555551 1112222222
Q ss_pred ccccccCcccccCCCCHHHHHHHHHHHHhc-CCCcceeecC
Q 003137 186 IENEYGPMEYEIGAPGRSYTRWAAKMAVGL-GTGVPWIMCK 225 (845)
Q Consensus 186 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~ 225 (845)
|=-|-|.+. .=.+.=.+.|+..+++. -.++|+.+-+
T Consensus 136 iIk~~~~~~----~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt 172 (316)
T COG1735 136 IIKEAGGSP----AITPLEEKSLRAAARAHKETGAPISTHT 172 (316)
T ss_pred eeeeccCcc----cCCHHHHHHHHHHHHHhhhcCCCeEEec
Confidence 223555432 12233345566666543 3477877644
No 218
>PRK10658 putative alpha-glucosidase; Provisional
Probab=20.22 E-value=2.1e+02 Score=35.56 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=45.6
Q ss_pred cccHHHHHHHHHHCCCCE--EEEccccCccCCCCceeeeccc--hhHHHHHHHHHHcCCEEEEecCceec
Q 003137 61 PEMWPDLIQKAKDGGLDV--IQTYVFWNGHEPSPGKYYFEGN--YDLVKFIKLAKQAGLYVNLRIGPYVC 126 (845)
Q Consensus 61 ~~~W~~~l~k~ka~GlN~--V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~~a~~~GL~VilrpGPyic 126 (845)
.+.-.+.++++|+.||-. |..-.+|.-. -.-+.|.|+-. -|..++++..++.|++|++..=|||.
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~-~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~ 350 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWMKE-FQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIA 350 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhhcC-CceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcC
Confidence 334567789999999864 4444556321 12245666533 27899999999999999999988885
Done!