Query         003138
Match_columns 845
No_of_seqs    311 out of 780
Neff          4.8 
Searched_HMMs 13730
Date          Mon Mar 25 14:38:35 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003138.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003138hhsearch_scop -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1oy3d_ d.211.1.1 (D:) Transcr  99.8 4.5E-20 3.3E-24  182.1  15.3  179  569-780    10-245 (255)
  2 d2fo1e1 d.211.1.1 (E:1021-1297  99.8 4.3E-21 3.1E-25  190.4   7.8  152  569-728    34-275 (277)
  3 d1awcb_ d.211.1.1 (B:) GA bind  99.8 7.2E-20 5.2E-24  168.2  13.0  141  569-727     3-153 (153)
  4 d1oy3d_ d.211.1.1 (D:) Transcr  99.8 1.4E-19   1E-23  178.6  13.9   66  662-734   187-252 (255)
  5 d1bi7b_ d.211.1.1 (B:) Cell cy  99.8 2.9E-20 2.1E-24  169.9   8.3  118  570-728     5-123 (125)
  6 d1dcqa1 d.211.1.1 (A:369-522)   99.8 2.5E-19 1.8E-23  171.2  15.1  130  571-734     9-141 (154)
  7 d1bd8a_ d.211.1.1 (A:) Cell cy  99.8 1.3E-19 9.5E-24  169.1  11.5  144  569-729     3-155 (156)
  8 d1myoa_ d.211.1.1 (A:) Myotrop  99.8 2.2E-20 1.6E-24  169.3   4.8  107  570-716     4-110 (118)
  9 d1uoha_ d.211.1.1 (A:) 26S pro  99.8 4.7E-19 3.4E-23  174.6  14.7  121  607-779   100-220 (223)
 10 d1ycsb1 d.211.1.1 (B:327-456)   99.8 1.3E-19 9.5E-24  166.8   9.5  122  570-731     3-127 (130)
 11 d1ixva_ d.211.1.1 (A:) 26S pro  99.8 3.9E-19 2.8E-23  172.6  13.1  167  569-769     1-215 (229)
 12 d1ihba_ d.211.1.1 (A:) p18ink4  99.8 2.1E-19 1.5E-23  165.6  10.6  144  570-729     3-155 (156)
 13 d1k1aa_ d.211.1.1 (A:) bcl-3 {  99.8 1.5E-18 1.1E-22  162.1  15.3  176  569-776     4-226 (228)
 14 d1s70b_ d.211.1.1 (B:) Myosin   99.8 9.5E-19 6.9E-23  175.8  13.5  165  569-769    41-274 (291)
 15 d1ot8a_ d.211.1.1 (A:) Neuroge  99.8   2E-18 1.5E-22  165.2  14.3  151  569-726    24-208 (209)
 16 d1myoa_ d.211.1.1 (A:) Myotrop  99.7 1.1E-18 7.9E-23  158.1   9.2   90  612-732     4-93  (118)
 17 d1iknd_ d.211.1.1 (D:) I-kappa  99.7 9.2E-19 6.7E-23  171.2   6.7  186  570-787     4-205 (221)
 18 d1ot8a_ d.211.1.1 (A:) Neuroge  99.7   9E-18 6.6E-22  160.6  13.0  162  581-778     2-207 (209)
 19 d1uoha_ d.211.1.1 (A:) 26S pro  99.7 4.7E-18 3.4E-22  167.3  11.0  119  569-728   104-222 (223)
 20 d1n11a_ d.211.1.1 (A:) Ankyrin  99.7 1.6E-17 1.2E-21  173.1  12.9  144  570-729   233-385 (408)
 21 d1ycsb1 d.211.1.1 (B:327-456)   99.7 1.1E-17 8.1E-22  153.7   8.4   91  611-732     2-92  (130)
 22 d1ixva_ d.211.1.1 (A:) 26S pro  99.7 3.3E-17 2.4E-21  158.8  10.0  124  568-732   105-228 (229)
 23 d1iknd_ d.211.1.1 (D:) I-kappa  99.7 1.6E-17 1.2E-21  162.3   7.6  148  569-732    40-203 (221)
 24 d1wdya_ d.211.1.1 (A:) RNase L  99.7 1.4E-16   1E-20  158.3  13.7  128  569-734   149-280 (285)
 25 d1wdya_ d.211.1.1 (A:) RNase L  99.7 1.5E-16 1.1E-20  157.9  13.6  184  569-780     6-273 (285)
 26 d1n11a_ d.211.1.1 (A:) Ankyrin  99.6 5.1E-16 3.7E-20  161.6  14.0  174  569-778   199-381 (408)
 27 d1bi7b_ d.211.1.1 (B:) Cell cy  99.6 1.6E-16 1.2E-20  144.8   8.6  119  610-780     3-122 (125)
 28 d1sw6a_ d.211.1.1 (A:) Swi6 an  99.6   7E-17 5.1E-21  166.6   6.4   45  569-622   108-152 (301)
 29 d1sw6a_ d.211.1.1 (A:) Swi6 an  99.6 9.7E-16   7E-20  157.9  12.4  143  607-769   104-301 (301)
 30 d1s70b_ d.211.1.1 (B:) Myosin   99.6 3.8E-16 2.8E-20  156.6   8.7   62  659-731   224-285 (291)
 31 d1k1aa_ d.211.1.1 (A:) bcl-3 {  99.6 3.3E-16 2.4E-20  146.0   7.2  149  569-724    41-227 (228)
 32 d2ajaa1 a.118.24.1 (A:3-348) H  99.6 6.2E-17 4.5E-21  171.3  -0.1  133  568-732    90-222 (346)
 33 d1ihba_ d.211.1.1 (A:) p18ink4  99.6 3.7E-15 2.7E-19  136.8   9.9  137  612-780     3-153 (156)
 34 d2fo1e1 d.211.1.1 (E:1021-1297  99.6 1.9E-16 1.4E-20  156.5   0.7   99  609-730    32-130 (277)
 35 d1awcb_ d.211.1.1 (B:) GA bind  99.5 2.1E-14 1.6E-18  131.2  10.5  141  612-779     4-152 (153)
 36 d1dcqa1 d.211.1.1 (A:369-522)   99.5 5.5E-14   4E-18  133.7  10.7  127  610-780     6-134 (154)
 37 d2ajaa1 a.118.24.1 (A:3-348) H  99.5 1.3E-15 9.2E-20  161.2  -1.2   96  605-731    85-185 (346)
 38 d1bd8a_ d.211.1.1 (A:) Cell cy  99.4 1.7E-13 1.3E-17  127.1   9.6  142  612-782     4-155 (156)
 39 d1ul4a_ g.72.1.1 (A:) Squamosa  99.4 1.5E-14 1.1E-18  124.9   0.2   34    1-34     48-81  (81)
 40 d1ul5a_ g.72.1.1 (A:) Squamosa  99.4 1.6E-14 1.1E-18  125.9   0.1   37    1-37     48-84  (86)
 41 d1qhoa1 b.1.18.2 (A:496-576) F  82.3     2.3 0.00017   34.3   8.1   77  398-494     3-80  (81)
 42 d2cxka1 b.1.18.1 (A:872-953) C  78.5     2.5 0.00018   34.1   7.0   69  401-485     2-70  (82)
 43 d1pbya3 b.1.18.14 (A:274-351)   71.8     1.6 0.00012   36.2   4.0   29  398-426     2-30  (78)
 44 d1jmxa3 b.1.18.14 (A:282-363)   69.6     1.9 0.00014   35.8   4.1   29  399-427     3-31  (82)
 45 d3bmva1 b.1.18.2 (A:496-578) C  55.7      24  0.0017   28.3   8.4   73  398-490     3-77  (83)
 46 d1cxla1 b.1.18.2 (A:497-583) C  54.4      14   0.001   29.7   6.8   33  399-433     3-35  (87)
 47 d1cyga1 b.1.18.2 (A:492-574) C  40.8      50  0.0036   26.1   8.1   70  399-488     4-75  (83)
 48 d1j8ca_ d.15.1.1 (A:) Ubiquiti  32.5      82   0.006   25.8   8.4   51  279-329    26-98  (103)
 49 d1uadc_ b.1.18.18 (C:) Exocyst  30.8      46  0.0033   26.8   6.3   38  399-438     5-43  (92)
 50 d2dmca1 b.1.18.10 (A:8-110) Fi  21.7      69   0.005   26.0   5.8   78  409-499    20-100 (103)

No 1  
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.82  E-value=4.5e-20  Score=182.12  Aligned_cols=179  Identities=20%  Similarity=0.148  Sum_probs=116.2

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCC-C--Cchh
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDK-P--GSRQ  645 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~-~--~~~~  645 (845)
                      +++||+|+.+|+.++++.||+.+.+..      ....++..|.||||+||++|+.++|++||++|++++... .  .|.+
T Consensus        10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~------~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_          10 DTALHLAVIHQHEPFLDFLLGFSAGHE------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSG------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcc------cccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhh
Confidence            489999999999999999998763321      112345679999999999999999999999999876322 1  2333


Q ss_pred             hhhhhccCC------------ccc-----------------------------------------ccCCCCCCCCChHHH
Q 003138          646 KQLVDRAGS------------GFI-----------------------------------------FKPNVIGPAGLTPLH  672 (845)
Q Consensus       646 k~lv~~~~~------------~~~-----------------------------------------f~pNa~g~~G~TPLH  672 (845)
                      .++..+..+            ...                                         .+.|.++..|.||||
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh  163 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence            222111000            000                                         023456667778888


Q ss_pred             HHHhCCChHHHHHHhhcCCCCCCcccccCC-cCCCCCCHHHHHHHcCCHHHHHHHHHhhhhcCCCCCceEEecCCCcccc
Q 003138          673 VAACRDDAENVLDALTDDPGSVGIEAWKSA-QDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDW  751 (845)
Q Consensus       673 iAA~~~~~e~VvelLl~~p~~ig~gA~vNa-kD~~G~TPLHyAa~~Gn~e~ieLL~~kl~~~~~~~~~v~l~I~~~~~~~  751 (845)
                      +|+..++.+ ++++|++      .+++.+. ++..|.||||+|+..|+.+++++|+++.++-.                 
T Consensus       164 ~A~~~~~~~-~v~~Ll~------~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin-----------------  219 (255)
T d1oy3d_         164 VAVIHKDAE-MVRLLRD------AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT-----------------  219 (255)
T ss_dssp             HHHHTTCHH-HHHHHHH------HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------------
T ss_pred             ccccccccc-cccchhc------ccccccccccccccccccccccccHHHHHHHHHHCCCCCC-----------------
Confidence            887777665 6777754      3444454 35667788888877777777777766533211                 


Q ss_pred             cccCCCCCCCCccccccccccchhhhhhc
Q 003138          752 DSKQKPLKGNKSSRVLSLQTEKITTKVMQ  780 (845)
Q Consensus       752 ~~~~k~~~~~~~~~i~~~~~~~~~~~~~~  780 (845)
                         .+...+.|+||++...+++.+++.+.
T Consensus       220 ---~~d~~g~t~L~~A~~~~~~~i~~~Ll  245 (255)
T d1oy3d_         220 ---ARMYGGRTPLGSALLRPNPILARLLR  245 (255)
T ss_dssp             ---CCCTTSCCHHHHHHTSSCHHHHHHHH
T ss_pred             ---CCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence               13334567788877766655555443


No 2  
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}
Probab=99.82  E-value=4.3e-21  Score=190.42  Aligned_cols=152  Identities=18%  Similarity=0.147  Sum_probs=110.6

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CC--chh
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDK-PG--SRQ  645 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~-~~--~~~  645 (845)
                      +++||+|+..|+.++|+.||......-+ ..|++++.++..|+||||+|++.|+.++|++||++|+|++... .+  +.+
T Consensus        34 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l-~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~  112 (277)
T d2fo1e1          34 RTVLHWIASNSSAEKSEDLIVHEAKECI-AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALH  112 (277)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHH-HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcchhHHH-HcCCCccccCCCCCeeecccccccccccccccccccccccccccccccccc
Confidence            3899999999999999999865322111 1234555667889999999999999999999999999887422 11  100


Q ss_pred             h--------------------h--------------------------hh----hc------------------------
Q 003138          646 K--------------------Q--------------------------LV----DR------------------------  651 (845)
Q Consensus       646 k--------------------~--------------------------lv----~~------------------------  651 (845)
                      .                    .                          .+    ..                        
T Consensus       113 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  192 (277)
T d2fo1e1         113 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH  192 (277)
T ss_dssp             HHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHH
T ss_pred             chhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccc
Confidence            0                    0                          00    00                        


Q ss_pred             ---cCC---c-------ccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcC
Q 003138          652 ---AGS---G-------FIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRA  718 (845)
Q Consensus       652 ---~~~---~-------~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~G  718 (845)
                         ...   .       ...+.+.+|..|.||||+|+..++.+ ++++|++      .||++|++|.+|.||||||+.+|
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~-iv~~Ll~------~gadin~~d~~G~T~L~~A~~~~  265 (277)
T d2fo1e1         193 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE-VVMYLIQ------QGASVEAVDATDHTARQLAQANN  265 (277)
T ss_dssp             HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHH-HHHHHHH------TTCCSSCCCSSSCCHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccCCCCCCHHHHHHHcCCHH-HHHHHHH------CcCCCCCcCCCCCCHHHHHHHcC
Confidence               000   0       00145667888999999999988765 8898854      57889999999999999999999


Q ss_pred             CHHHHHHHHH
Q 003138          719 HHSYIHLVQR  728 (845)
Q Consensus       719 n~e~ieLL~~  728 (845)
                      |.+++++|++
T Consensus       266 ~~~iv~lL~~  275 (277)
T d2fo1e1         266 HHNIVDIFDR  275 (277)
T ss_dssp             CHHHHHHHHT
T ss_pred             CHHHHHHHHH
Confidence            9999998875


No 3  
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.81  E-value=7.2e-20  Score=168.22  Aligned_cols=141  Identities=17%  Similarity=0.025  Sum_probs=109.9

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC---chh
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPG---SRQ  645 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~~---~~~  645 (845)
                      +++|+.|+..|..++|+.||+.+.+  ++        .+..|.||||+|+..++.++|++++............   +..
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~--~~--------~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAP--FT--------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCC--CC--------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCC--cc--------cccCCCccccccccccccccccccccccccccccccccccccc
Confidence            5789999999999999999997632  21        2567999999999999999999999887655422211   111


Q ss_pred             hh-------hhhccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcC
Q 003138          646 KQ-------LVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRA  718 (845)
Q Consensus       646 k~-------lv~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~G  718 (845)
                      ..       .+... .....+++.++..|+||||+|+..++.+ ++++|++      .|+++|.+|.+|.||||+|+.+|
T Consensus        73 ~~~~~~~~~~~~~l-~~~~~~~~~~~~~g~T~L~~A~~~g~~~-iv~~ll~------~gad~~~~d~~g~Tpl~~A~~~g  144 (153)
T d1awcb_          73 MAASEGHANIVEVL-LKHGADVNAKDMLKMTALHWATEHNHQE-VVELLIK------YGADVHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             HHHHHTCHHHHHHH-HTTTCCTTCCCTTSCCHHHHHHHTTCHH-HHHHHHH------TTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cccccccceeeecc-cccCCccccccccCchHHHhhhhcchhh-eeeeccc------cccCCcccCCCCCCHHHHHHHcC
Confidence            11       11110 0112367889999999999999998876 8999964      57899999999999999999999


Q ss_pred             CHHHHHHHH
Q 003138          719 HHSYIHLVQ  727 (845)
Q Consensus       719 n~e~ieLL~  727 (845)
                      |.+++++|+
T Consensus       145 ~~eiv~lL~  153 (153)
T d1awcb_         145 NEDLAEILQ  153 (153)
T ss_dssp             CHHHHHHHC
T ss_pred             CHHHHHhCc
Confidence            999999873


No 4  
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.80  E-value=1.4e-19  Score=178.59  Aligned_cols=66  Identities=29%  Similarity=0.254  Sum_probs=59.5

Q ss_pred             CCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHHhhhhcC
Q 003138          662 VIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKS  734 (845)
Q Consensus       662 a~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~kl~~~~  734 (845)
                      ..+..|.||||+|+..++.+ ++++|++      +||++|.+|.+|.||||||+.+||.+++++|++.++++.
T Consensus       187 ~~~~~g~TpL~~A~~~~~~~-~v~~Ll~------~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~~~  252 (255)
T d1oy3d_         187 PEPTCGRTPLHLAVEAQAAS-VLELLLK------AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP  252 (255)
T ss_dssp             CCTTTCCCHHHHHHHTTCHH-HHHHHHH------TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred             cccccccccccccccccHHH-HHHHHHH------CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence            34678999999999998876 8999965      578999999999999999999999999999999999765


No 5  
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.80  E-value=2.9e-20  Score=169.88  Aligned_cols=118  Identities=22%  Similarity=0.195  Sum_probs=100.1

Q ss_pred             hHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCchhhhhh
Q 003138          570 WLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLV  649 (845)
Q Consensus       570 ~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~~~~~k~lv  649 (845)
                      .+||+|+.+|+.++|+.||+.+.         +++..+..|.||||.|+ .|+.+||++||++|++              
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~ga---------d~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~--------------   60 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGA---------NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE--------------   60 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTC---------CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC--------------
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCC---------ccccccccccccccccc-cccccccccccccccc--------------
Confidence            68999999999999999997642         23344667999999775 7999999999999986              


Q ss_pred             hccCCcccccCCCCCCCCC-hHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Q 003138          650 DRAGSGFIFKPNVIGPAGL-TPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQR  728 (845)
Q Consensus       650 ~~~~~~~~f~pNa~g~~G~-TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~  728 (845)
                                +|.++..|. ||||+|+..++.+ ++++|++      .|+++|.+|.+|+||||+|+.+|+.+++++|+.
T Consensus        61 ----------~~~~~~~~~~~~L~~A~~~g~~~-~v~~Ll~------~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          61 ----------PNCADPATLTRPVHDAAREGFLD-TLVVLHR------AGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             ----------CCCCCTTTCCCHHHHHHHHTCHH-HHHHHHH------HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ----------ccccccccccccccccccccccc-ccccccc------cccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence                      355556554 7999999998876 8999964      578999999999999999999999999998853


No 6  
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.80  E-value=2.5e-19  Score=171.21  Aligned_cols=130  Identities=21%  Similarity=0.127  Sum_probs=105.6

Q ss_pred             HHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCchhhh
Q 003138          571 LLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRR---NCRPMVELLLNYAPDNVLDKPGSRQKQ  647 (845)
Q Consensus       571 LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~---n~~eIVElLL~~gad~~~~~~~~~~k~  647 (845)
                      .|+-|++.+....++.++..+.+.+..   ......+..|+||||+|++.   ++.+||++||++|++            
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~---~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad------------   73 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEK---IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN------------   73 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSB---CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC------------
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCC---CCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC------------
Confidence            467889999888888877654332211   11112245689999999984   688999999999986            


Q ss_pred             hhhccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHH
Q 003138          648 LVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQ  727 (845)
Q Consensus       648 lv~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~  727 (845)
                                  +|.+|..|.||||+|+..++.+ ++++|++      .||++|.+|.+|+||||||+.+|+.+++++|+
T Consensus        74 ------------in~~d~~g~TpLh~A~~~~~~~-~v~~Ll~------~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~  134 (154)
T d1dcqa1          74 ------------LDKQTGKGSTALHYCCLTDNAE-CLKLLLR------GKASIEIANESGETPLDIAKRLKHEHCEELLT  134 (154)
T ss_dssp             ------------TTCCCTTCCCHHHHHHHTTCHH-HHHHHHH------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ------------hhhhhhhhcccccccccccccc-ccccccc------cCccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence                        5778889999999999998876 8999964      58899999999999999999999999999999


Q ss_pred             HhhhhcC
Q 003138          728 RKINKKS  734 (845)
Q Consensus       728 ~kl~~~~  734 (845)
                      +..+.+.
T Consensus       135 ~~~~~~~  141 (154)
T d1dcqa1         135 QALSGRF  141 (154)
T ss_dssp             HHHTTCC
T ss_pred             HhCCCCC
Confidence            9887654


No 7  
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79  E-value=1.3e-19  Score=169.10  Aligned_cols=144  Identities=18%  Similarity=0.134  Sum_probs=111.5

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CC--chh
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDK-PG--SRQ  645 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~-~~--~~~  645 (845)
                      ...|+.|+.+|+.++|+.||+..        +.++...+..|+||||+|+. ++.++|+.||+++++++... .+  +..
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~--------~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~   73 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRE--------LVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVH   73 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTT--------CCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhC--------CCCCCccCCCCCcccccccc-cccccccccccccccccccccccccccc
Confidence            45799999999999999999742        23344557789999999975 88999999999998877433 22  322


Q ss_pred             hhhhhccCCc------ccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCC
Q 003138          646 KQLVDRAGSG------FIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAH  719 (845)
Q Consensus       646 k~lv~~~~~~------~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn  719 (845)
                      .+...+....      ...++|.++..|.||||+|+..++.+ ++++|+.       |+++|.+|.+|+||||||+.+|+
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~-i~~~L~~-------~~~~~~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          74 DAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA-VVSFLAA-------ESDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH-HHHHHHT-------TSCTTCCCTTSCCHHHHHHHSCC
T ss_pred             cccccccccccccccccccccccccCCCCeeecccccccccc-ccccccc-------cccccccCCCCCCHHHHHHHcCC
Confidence            2221111100      11367899999999999999998876 8998853       67899999999999999999999


Q ss_pred             HHHHHHHHHh
Q 003138          720 HSYIHLVQRK  729 (845)
Q Consensus       720 ~e~ieLL~~k  729 (845)
                      .+++++|++.
T Consensus       146 ~~iv~~Ll~h  155 (156)
T d1bd8a_         146 QDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            9999999864


No 8  
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.78  E-value=2.2e-20  Score=169.33  Aligned_cols=107  Identities=19%  Similarity=0.089  Sum_probs=93.2

Q ss_pred             hHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCchhhhhh
Q 003138          570 WLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLV  649 (845)
Q Consensus       570 ~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~~~~~k~lv  649 (845)
                      ++|+||+++|..++|+.||+.+.  +       ++..+..|+||||+|+..++.+++++|+++|++              
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~--d-------~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d--------------   60 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGE--D-------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD--------------   60 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTC--C-------CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT--------------
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhh--c-------cccccccccccccccccccccccccccccccce--------------
Confidence            68999999999999999998642  2       234466799999999999999999999999986              


Q ss_pred             hccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHH
Q 003138          650 DRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASL  716 (845)
Q Consensus       650 ~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~  716 (845)
                                +|.+|..|+||||+|+..++.+ ++++|++      .||++|.+|.+|.||||+|..
T Consensus        61 ----------in~~d~~g~tpLh~A~~~~~~~-~v~~Ll~------~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          61 ----------INAPDKHHITPLLSAVYEGHVS-CVKLLLS------KGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             ----------TTCCSSSCSCHHHHHHTTTCCH-HHHHHHT------TCCCSSSSSSSTCCCCCTCSS
T ss_pred             ----------eeecccccccchhhhhhcCchh-hhhhhhc------ccccceeeCCCCCCHHHHHhH
Confidence                      4667889999999999998876 8999964      578999999999999999943


No 9  
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.78  E-value=4.7e-19  Score=174.55  Aligned_cols=121  Identities=20%  Similarity=0.157  Sum_probs=84.8

Q ss_pred             hhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCchhhhhhhccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHH
Q 003138          607 AILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDA  686 (845)
Q Consensus       607 ~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~~~~~k~lv~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~Vvel  686 (845)
                      +..|.||||+|+.+++.++|++||++|++                        +|.++..|.||||+|+..+..+ ++++
T Consensus       100 d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d------------------------~~~~~~~~~t~L~~a~~~~~~~-~~~~  154 (223)
T d1uoha_         100 NQNGCTPLHYAASKNRHEIAVMLLEGGAN------------------------PDAKDHYEATAMHRAAAKGNLK-MIHI  154 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------------------TTCCCTTSCCHHHHHHHTTCHH-HHHH
T ss_pred             CCCCCchhhHHHHcCCHHHHHHHHHCCCC------------------------CCCcCCCCCccchhhhhcCCcc-hhhh
Confidence            44456666666666666666666666554                        5677788889999988887765 7788


Q ss_pred             hhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHHhhhhcCCCCCceEEecCCCcccccccCCCCCCCCcccc
Q 003138          687 LTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRV  766 (845)
Q Consensus       687 Ll~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~kl~~~~~~~~~v~l~I~~~~~~~~~~~k~~~~~~~~~i  766 (845)
                      |..      .++++|.+|.+|+||||+|+.+|+.+++++|+++.++-.         +           ++..+.|++|+
T Consensus       155 L~~------~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~---------~-----------~d~~g~tpl~~  208 (223)
T d1uoha_         155 LLY------YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY---------I-----------ENKEEKTPLQV  208 (223)
T ss_dssp             HHH------TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC---------C-----------CCTTSCCHHHH
T ss_pred             hcc------ccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCC---------C-----------CCCCCCCHHHH
Confidence            754      466788889999999999999999988888887765422         1           33455678888


Q ss_pred             ccccccchhhhhh
Q 003138          767 LSLQTEKITTKVM  779 (845)
Q Consensus       767 ~~~~~~~~~~~~~  779 (845)
                      ++. |...++|.+
T Consensus       209 A~~-~~~~i~~~L  220 (223)
T d1uoha_         209 AKG-GLGLILKRM  220 (223)
T ss_dssp             CCT-THHHHHHHH
T ss_pred             HHC-CCHHHHhcc
Confidence            764 544444443


No 10 
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.78  E-value=1.3e-19  Score=166.79  Aligned_cols=122  Identities=20%  Similarity=0.128  Sum_probs=103.8

Q ss_pred             hHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCchhhhhh
Q 003138          570 WLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLV  649 (845)
Q Consensus       570 ~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~~~~~k~lv  649 (845)
                      .+|++|+..|..++|+.||+.+.  +       ++..+..|+||||+|+..++.+++++||++|++              
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~--d-------~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~--------------   59 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVD--D-------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN--------------   59 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTS--S-------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC--------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCC--C-------ccccccccccccccccccccccccccccccccc--------------
Confidence            58999999999999999997653  2       234467799999999999999999999999976              


Q ss_pred             hccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCC-CCCCHHHHH--HHcCCHHHHHHH
Q 003138          650 DRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDS-TGLTPNDYA--SLRAHHSYIHLV  726 (845)
Q Consensus       650 ~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~-~G~TPLHyA--a~~Gn~e~ieLL  726 (845)
                                +|.+|..|+||||+|+.+++.+ ++++|++      .||++|++|. +|.||+++|  +.+||.+++++|
T Consensus        60 ----------~~~~d~~g~tpLh~A~~~g~~~-~v~~Ll~------~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L  122 (130)
T d1ycsb1          60 ----------VNAADSDGWTPLHCAASCNNVQ-VCKFLVE------SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL  122 (130)
T ss_dssp             ----------TTCCCTTCCCHHHHHHHTTCHH-HHHHHHH------TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             ----------cccccccCcccccccchhhHHH-HHHHHHH------cCCCcccccCCCCCCHHHHHHHHHcChHHHHHHH
Confidence                      4677889999999999998876 8999965      5788998885 589998776  567999999999


Q ss_pred             HHhhh
Q 003138          727 QRKIN  731 (845)
Q Consensus       727 ~~kl~  731 (845)
                      +..-+
T Consensus       123 ~~~~~  127 (130)
T d1ycsb1         123 YGVQE  127 (130)
T ss_dssp             HHHHH
T ss_pred             HhHHH
Confidence            87644


No 11 
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.78  E-value=3.9e-19  Score=172.58  Aligned_cols=167  Identities=19%  Similarity=0.099  Sum_probs=120.5

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCC----CCC--
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLD----KPG--  642 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~----~~~--  642 (845)
                      +++||+||.+|+.++++.||+.. ...+       ..++..|+||||+||..|+.++|++||++|++++..    ..+  
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~-~~~~-------~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~   72 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK-PSLL-------LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWT   72 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC-GGGT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCC
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC-CCcc-------cccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccc
Confidence            46899999999999999999752 1122       244677999999999999999999999999887521    111  


Q ss_pred             chh-------hhhhh-----ccCCc-----------------------------ccccCCCCCCCCChHHHHHHhCCChH
Q 003138          643 SRQ-------KQLVD-----RAGSG-----------------------------FIFKPNVIGPAGLTPLHVAACRDDAE  681 (845)
Q Consensus       643 ~~~-------k~lv~-----~~~~~-----------------------------~~f~pNa~g~~G~TPLHiAA~~~~~e  681 (845)
                      +.+       ..++.     .....                             ...+.+.++..|+||||+|+..++.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~  152 (229)
T d1ixva_          73 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK  152 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccc
Confidence            110       00000     00000                             00145667889999999999998876


Q ss_pred             HHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-hhhcCCCCCceEEecCCCcccccccCCCCCC
Q 003138          682 NVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRK-INKKSSESGRVILDIPGSIVDWDSKQKPLKG  760 (845)
Q Consensus       682 ~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~k-l~~~~~~~~~v~l~I~~~~~~~~~~~k~~~~  760 (845)
                       +++.|+..+     +.++|.+|.+|+||||||+.+|+.+++++|+.+ .++-.         +           +...+
T Consensus       153 -~~~~Ll~~~-----~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~---------~-----------~d~~g  206 (229)
T d1ixva_         153 -LIELLCGLG-----KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD---------L-----------VDNKG  206 (229)
T ss_dssp             -HHHHHHTTT-----CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC---------C-----------CCTTS
T ss_pred             -ccccccccc-----cccccccccccCCchhhhcccccHHHHHHHHHhcCCCCC---------C-----------cCCCC
Confidence             889997642     357899999999999999999999999988864 33321         1           33456


Q ss_pred             CCccccccc
Q 003138          761 NKSSRVLSL  769 (845)
Q Consensus       761 ~~~~~i~~~  769 (845)
                      .|+++++..
T Consensus       207 ~t~l~~A~~  215 (229)
T d1ixva_         207 AKAEDVALN  215 (229)
T ss_dssp             CCTGGGCSC
T ss_pred             CCHHHHHhh
Confidence            788998765


No 12 
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.78  E-value=2.1e-19  Score=165.59  Aligned_cols=144  Identities=17%  Similarity=0.102  Sum_probs=111.0

Q ss_pred             hHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CC--chhh
Q 003138          570 WLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDK-PG--SRQK  646 (845)
Q Consensus       570 ~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~-~~--~~~k  646 (845)
                      .+||+|+.+|..++|+.||+.+.         +++.++..|+||||+|+ .++.+++++||++|++++... .+  +...
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~---------d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~   72 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNV---------NVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHD   72 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCC---------CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCC---------CcCccCCcccccccccc-cccccccccccccccccccccccCcccccc
Confidence            68999999999999999998642         33345678999999886 789999999999999877333 22  2221


Q ss_pred             hhhhccCCc------ccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCH
Q 003138          647 QLVDRAGSG------FIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHH  720 (845)
Q Consensus       647 ~lv~~~~~~------~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~  720 (845)
                      +...+....      +..+++..+..|.||||+|+..++.+ ++++|++.+     +.+.+.+|.+|+||||+|+++||.
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~-~~~~Ll~~~-----~~~~~~~d~~g~TpL~~A~~~~~~  146 (156)
T d1ihba_          73 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR-VVEFLVKHT-----ASNVGHRNHKGDTACDLARLYGRN  146 (156)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-HHHHHHHHS-----CCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-ccccccccc-----cccccccCCCCCCHHHHHHHcCCH
Confidence            111111000      12357888999999999999998876 788887642     246899999999999999999999


Q ss_pred             HHHHHHHHh
Q 003138          721 SYIHLVQRK  729 (845)
Q Consensus       721 e~ieLL~~k  729 (845)
                      +++++|+++
T Consensus       147 ~iv~~Ll~~  155 (156)
T d1ihba_         147 EVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999999876


No 13 
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77  E-value=1.5e-18  Score=162.13  Aligned_cols=176  Identities=19%  Similarity=0.096  Sum_probs=127.4

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CC--chh
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDK-PG--SRQ  645 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~-~~--~~~  645 (845)
                      .|+||+|+.+|+.++++.||+.+.....     +.+..+..|+||||+|+..|+.++|++||++|++.+... .+  +..
T Consensus         4 ~TpLh~A~~~g~~~~v~~Ll~~~~~~g~-----~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~   78 (228)
T d1k1aa_           4 DTPLHIAVVQGNLPAVHRLVNLFQQGGR-----ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH   78 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTC-----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCccCCCCCccceehhcccccccccccccccccccccccccccccc
Confidence            3799999999999999999987654332     233456779999999999999999999999998876432 11  110


Q ss_pred             h-----------hhhh-ccCCc--------------------------------ccccCCCCCCCCChHHHHHHhCCChH
Q 003138          646 K-----------QLVD-RAGSG--------------------------------FIFKPNVIGPAGLTPLHVAACRDDAE  681 (845)
Q Consensus       646 k-----------~lv~-~~~~~--------------------------------~~f~pNa~g~~G~TPLHiAA~~~~~e  681 (845)
                      .           .... .....                                ...........|.||||.|+..+...
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence            0           0000 00000                                00012334568999999999987765


Q ss_pred             HHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHHhhhhcCCCCCceEEecCCCcccccccCCCCCCC
Q 003138          682 NVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGN  761 (845)
Q Consensus       682 ~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~kl~~~~~~~~~v~l~I~~~~~~~~~~~k~~~~~  761 (845)
                       +++.++.      .+.+.+.+|.+|.||||+|+.+|+.+++++|+++.++-.         +           +...+.
T Consensus       159 -~~~~~~~------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n---------~-----------~d~~G~  211 (228)
T d1k1aa_         159 -MVQLLLQ------HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS---------L-----------KNCHND  211 (228)
T ss_dssp             -HHHHHHH------TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT---------C-----------CCTTSC
T ss_pred             -hhhhhhh------hccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC---------C-----------CCCCCC
Confidence             7888865      456789999999999999999999999999988865422         1           334677


Q ss_pred             Cccccccccccchhh
Q 003138          762 KSSRVLSLQTEKITT  776 (845)
Q Consensus       762 ~~~~i~~~~~~~~~~  776 (845)
                      |+++++...+++.++
T Consensus       212 TpL~~A~~~~~~div  226 (228)
T d1k1aa_         212 TPLMVARSRRVIDIL  226 (228)
T ss_dssp             CTTTTCSSHHHHHHH
T ss_pred             CHHHHHHhCCCcccc
Confidence            899999887665554


No 14 
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=99.76  E-value=9.5e-19  Score=175.78  Aligned_cols=165  Identities=18%  Similarity=0.110  Sum_probs=123.0

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCCC---Cchh
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKP---GSRQ  645 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~---~~~~  645 (845)
                      .++|+.|+.+|+.++|+.||+.+.  ++       +..+..|.||||+|+++|+.+||++||++|++......   .+.+
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~Ga--dv-------n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~  111 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERGA--DI-------NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLH  111 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCC--CT-------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCC--CC-------CccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccc
Confidence            479999999999999999998652  23       34567799999999999999999999999987553221   1110


Q ss_pred             -----------hhhhh-cc------CCc------------------------------------------------cccc
Q 003138          646 -----------KQLVD-RA------GSG------------------------------------------------FIFK  659 (845)
Q Consensus       646 -----------k~lv~-~~------~~~------------------------------------------------~~f~  659 (845)
                                 +.++. +.      ...                                                ....
T Consensus       112 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (291)
T d1s70b_         112 AAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN  191 (291)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             ccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence                       01110 00      000                                                0002


Q ss_pred             CCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHHhhhhcCCCCCc
Q 003138          660 PNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGR  739 (845)
Q Consensus       660 pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~kl~~~~~~~~~  739 (845)
                      ....+..|.||||+|+..++.+ +++.|+.      .|+++|.+|.+|+||||+|+..|+.+++++|+++.++-.     
T Consensus       192 ~~~~~~~g~t~L~~a~~~~~~~-~~~~Ll~------~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~-----  259 (291)
T d1s70b_         192 DVRHAKSGGTALHVAAAKGYTE-VLKLLIQ------ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME-----  259 (291)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHH-HHHHHHT------TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----
T ss_pred             cccccCCCCChhhHHHHcCChh-hhccccc------ceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----
Confidence            3446678999999999998876 8999964      578899999999999999999999999999998876532     


Q ss_pred             eEEecCCCcccccccCCCCCCCCccccccc
Q 003138          740 VILDIPGSIVDWDSKQKPLKGNKSSRVLSL  769 (845)
Q Consensus       740 v~l~I~~~~~~~~~~~k~~~~~~~~~i~~~  769 (845)
                          +           ++..++|++++++.
T Consensus       260 ----~-----------~d~~G~TaL~~A~e  274 (291)
T d1s70b_         260 ----A-----------VNKVGQTAFDVADE  274 (291)
T ss_dssp             ----C-----------CCTTSCCTTTSCCS
T ss_pred             ----C-----------cCCCCCCHHHHHHH
Confidence                1           33456789999875


No 15 
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.76  E-value=2e-18  Score=165.16  Aligned_cols=151  Identities=22%  Similarity=0.133  Sum_probs=99.0

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcC-CCCCCchh------------------------hhhccccHHHHHHHcCCH
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVD-TGDHTSSE------------------------LAILEMGLLHKAVRRNCR  623 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~-~~~~s~~~------------------------~~~~G~TpLH~AV~~n~~  623 (845)
                      +++||+|+..|..++++.||+.+...+.. ..+..+..                        ....+.++.+.+......
T Consensus        24 ~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (209)
T d1ot8a_          24 ETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIE  103 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            48999999999999999999976542221 00011100                        001234555555555555


Q ss_pred             HHHHHHHhcCCCCCCCC-C--CchhhhhhhccCCc------ccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCC
Q 003138          624 PMVELLLNYAPDNVLDK-P--GSRQKQLVDRAGSG------FIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSV  694 (845)
Q Consensus       624 eIVElLL~~gad~~~~~-~--~~~~k~lv~~~~~~------~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~i  694 (845)
                      .+.++|+.++++++... .  .+...+...+..+.      ...++|..|..|.||||+||..++.+ ++++|++     
T Consensus       104 ~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~-~v~~Ll~-----  177 (209)
T d1ot8a_         104 GMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE-ASKALLD-----  177 (209)
T ss_dssp             THHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH-HHHHHHH-----
T ss_pred             hhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHH-HHHHHHH-----
Confidence            55566665555544221 1  12221111110000      11246888999999999999998876 8999964     


Q ss_pred             CcccccCCcCCCCCCHHHHHHHcCCHHHHHHH
Q 003138          695 GIEAWKSAQDSTGLTPNDYASLRAHHSYIHLV  726 (845)
Q Consensus       695 g~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL  726 (845)
                       .|||+|.+|.+|+||||||+++||.++|++|
T Consensus       178 -~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         178 -NFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             -TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -CCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence             6899999999999999999999999999987


No 16 
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.75  E-value=1.1e-18  Score=158.05  Aligned_cols=90  Identities=26%  Similarity=0.148  Sum_probs=81.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCchhhhhhhccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCC
Q 003138          612 GLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDP  691 (845)
Q Consensus       612 TpLH~AV~~n~~eIVElLL~~gad~~~~~~~~~~k~lv~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p  691 (845)
                      |||++|+++|+.++|++||++|+|                        +|.++..|+||||+|+..++.+ ++++|++  
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d------------------------~n~~~~~g~t~lh~A~~~~~~~-~~~~ll~--   56 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGED------------------------VNRTLEGGRKPLHYAADCGQLE-ILEFLLL--   56 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCC------------------------CCCCSSSSCCTTHHHHHHSTTT-HHHHHHH--
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhc------------------------cccccccccccccccccccccc-ccccccc--
Confidence            899999999999999999999976                        5677889999999999998876 8898864  


Q ss_pred             CCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHHhhhh
Q 003138          692 GSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINK  732 (845)
Q Consensus       692 ~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~kl~~  732 (845)
                          .|+++|.+|.+|+||||||+.+|+.+++++|+++.++
T Consensus        57 ----~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad   93 (118)
T d1myoa_          57 ----KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD   93 (118)
T ss_dssp             ----SSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCC
T ss_pred             ----ccceeeecccccccchhhhhhcCchhhhhhhhccccc
Confidence                5788999999999999999999999999999877543


No 17 
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.73  E-value=9.2e-19  Score=171.19  Aligned_cols=186  Identities=16%  Similarity=0.063  Sum_probs=127.5

Q ss_pred             hHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CC--chhh
Q 003138          570 WLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDK-PG--SRQK  646 (845)
Q Consensus       570 ~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~-~~--~~~k  646 (845)
                      ++||+|+.+|+.++++.|++.+...     +.+++.++..|+||||+|++.++.++|++|+++|+|++... .+  |++.
T Consensus         4 t~Lh~A~~~g~~~~~~~li~~~~~~-----~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~   78 (221)
T d1iknd_           4 SFLHLAIIHEEKALTMEVIRQVKGD-----LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL   78 (221)
T ss_dssp             CTTHHHHHTTCSSSSSCCCC----------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhC-----CCCcccCCCCCCcccccccccccccccccccccccccccccccccccccc
Confidence            6899999999877776666544321     22334556779999999999999999999999998877332 22  3322


Q ss_pred             hhh-----------h-ccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcC-CCCCCHHHH
Q 003138          647 QLV-----------D-RAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQD-STGLTPNDY  713 (845)
Q Consensus       647 ~lv-----------~-~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD-~~G~TPLHy  713 (845)
                      +..           . ..........+.....|.||||+|+..++.+ +++.|..      .|++++.++ .+|.||||+
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~-~~~~l~~------~~~~~~~~~~~~G~T~L~~  151 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG-IVELLVS------LGADVNAQEPCNGRTALHL  151 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHH-HHHHHHH------HTCCTTCCCTTTCCCHHHH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChh-heeeecc------cCcccccccccCCCCcccc
Confidence            211           1 1111111123445567999999999998776 7788753      467778776 579999999


Q ss_pred             HHHcCCHHHHHHHHHhhhhcCCCCCceEEecCCCcccccccCCCCCCCCccccccccccchhhhhhccccHHHH
Q 003138          714 ASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVMQQQCRLCE  787 (845)
Q Consensus       714 Aa~~Gn~e~ieLL~~kl~~~~~~~~~v~l~I~~~~~~~~~~~k~~~~~~~~~i~~~~~~~~~~~~~~~~C~~C~  787 (845)
                      |+..|+.+++++|+++.++-.                    .+...+.|+++++..+++..+++.+.....++.
T Consensus       152 A~~~g~~~~v~~Ll~~gad~~--------------------~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~~  205 (221)
T d1iknd_         152 AVDLQNPDLVSLLLKCGADVN--------------------RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  205 (221)
T ss_dssp             HHHTTCHHHHHHHHTTTCCSC--------------------CCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             ccccccHHHHHHHHhcCCccc--------------------ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCccc
Confidence            999999999999986644321                    244567899999999888877777766555443


No 18 
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.73  E-value=9e-18  Score=160.59  Aligned_cols=162  Identities=19%  Similarity=0.104  Sum_probs=118.7

Q ss_pred             HHHHHHHHHhhhcCCcCCCCCCchh-hhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-C--chhhh---------
Q 003138          581 CAVVKKLLGILFDGTVDTGDHTSSE-LAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKP-G--SRQKQ---------  647 (845)
Q Consensus       581 ~aVVk~LLd~l~~~~v~~~~~s~~~-~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~-~--~~~k~---------  647 (845)
                      .+||+.||+.+.+         .+. .|..|+||||+||+.|+.++|++||.+|++++.... +  +....         
T Consensus         2 ~~~v~~Ll~~g~d---------in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~   72 (209)
T d1ot8a_           2 AQVISDLLAQGAE---------LNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVF   72 (209)
T ss_dssp             HHHHHHHHHHHHH---------HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHCCCC---------cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccc
Confidence            4799999998743         223 467899999999999999999999999988764321 1  10000         


Q ss_pred             ------------------------hhhccC-------CcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCc
Q 003138          648 ------------------------LVDRAG-------SGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGI  696 (845)
Q Consensus       648 ------------------------lv~~~~-------~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~  696 (845)
                                              ......       ..+..+++.++..|.||||+|+..+..+ +++.|++      .
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~-~~~~l~~------~  145 (209)
T d1ot8a_          73 QILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTE-AVNILLM------H  145 (209)
T ss_dssp             HHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH-HHHHHHH------T
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcce-eeeeecc------c
Confidence                                    000000       0011256789999999999999998765 7888865      4


Q ss_pred             ccccCCcCCCCCCHHHHHHHcCCHHHHHHHHHhhhhcCCCCCceEEecCCCcccccccCCCCCCCCccccccccccchhh
Q 003138          697 EAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITT  776 (845)
Q Consensus       697 gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~kl~~~~~~~~~v~l~I~~~~~~~~~~~k~~~~~~~~~i~~~~~~~~~~  776 (845)
                      ++++|.+|.+|.||||+|+.+|+.+++++|+++.++..         +           +...+.|+++++..+|+..++
T Consensus       146 ~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n---------~-----------~d~~g~Tpl~~A~~~~~~~iv  205 (209)
T d1ot8a_         146 HANRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE---------I-----------TDHMDRLPRDVASERLHHDIV  205 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------C-----------CCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccccchhccccHHHHHHHHHHCCCCCC---------C-----------cCCCCCCHHHHHHHcCCHHHH
Confidence            56789999999999999999999999999987655422         1           334567899999998776666


Q ss_pred             hh
Q 003138          777 KV  778 (845)
Q Consensus       777 ~~  778 (845)
                      |.
T Consensus       206 ~l  207 (209)
T d1ot8a_         206 RL  207 (209)
T ss_dssp             HH
T ss_pred             hh
Confidence            53


No 19 
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.72  E-value=4.7e-18  Score=167.30  Aligned_cols=119  Identities=19%  Similarity=0.194  Sum_probs=103.0

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCchhhhh
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQL  648 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~~~~~k~l  648 (845)
                      .++||+|+..|..++++.||+.+.+         ++..+..|.||||+|+.+++.+++++|+.++++             
T Consensus       104 ~tpL~~A~~~~~~e~~~~Ll~~g~d---------~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~-------------  161 (223)
T d1uoha_         104 CTPLHYAASKNRHEIAVMLLEGGAN---------PDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-------------  161 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-------------
T ss_pred             CchhhHHHHcCCHHHHHHHHHCCCC---------CCCcCCCCCccchhhhhcCCcchhhhhccccce-------------
Confidence            4799999999999999999986532         233466799999999999999999999999875             


Q ss_pred             hhccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Q 003138          649 VDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQR  728 (845)
Q Consensus       649 v~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~  728 (845)
                                 +|.+|..|+||||+||..++.+ ++++|++      .||++|.+|.+|+||||+|+ .||.+++++|++
T Consensus       162 -----------i~~~d~~g~TpL~~Aa~~g~~~-~v~~LL~------~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         162 -----------TNIQDTEGNTPLHLACDEERVE-EAKLLVS------QGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             -----------SCCCCTTCCCHHHHHHHTTCHH-HHHHHHH------TTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             -----------eeeccCCCCceeccccccCcHH-HHHHHHH------CCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence                       5777889999999999998876 8999964      57999999999999999995 699988888764


No 20 
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.71  E-value=1.6e-17  Score=173.05  Aligned_cols=144  Identities=17%  Similarity=0.079  Sum_probs=96.1

Q ss_pred             hHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCC---CCchhh
Q 003138          570 WLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDK---PGSRQK  646 (845)
Q Consensus       570 ~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~---~~~~~k  646 (845)
                      ++|++|++.++.++++.+++.....+         ..+..|.||||.|++.++.+++++|+++|++.+...   ..+.+.
T Consensus       233 t~l~~a~~~~~~~~~~~~~~~~~~~~---------~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~  303 (408)
T d1n11a_         233 TPLHLAAQEGHAEMVALLLSKQANGN---------LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV  303 (408)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCTT---------CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHH
T ss_pred             CHHHHHHHhCcHhHhhhhhccccccc---------cccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchh
Confidence            46666666666666666665432111         123345666666666666666666666666554221   112222


Q ss_pred             hhhhccCCc------ccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCH
Q 003138          647 QLVDRAGSG------FIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHH  720 (845)
Q Consensus       647 ~lv~~~~~~------~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~  720 (845)
                      +...+....      ...++|.+|..|.||||+|+..++.+ ++++|++      +||++|++|.+|+||||||+++||.
T Consensus       304 ~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~-iv~~Ll~------~GAd~n~~d~~G~t~L~~A~~~~~~  376 (408)
T d1n11a_         304 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD-IVTLLLK------NGASPNEVSSDGTTPLAIAKRLGYI  376 (408)
T ss_dssp             HHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH-HHHHHHH------TTCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred             hcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHH-HHHHHHH------CCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            111111000      11257888999999999999998876 8999965      5899999999999999999999999


Q ss_pred             HHHHHHHHh
Q 003138          721 SYIHLVQRK  729 (845)
Q Consensus       721 e~ieLL~~k  729 (845)
                      +++++|...
T Consensus       377 ~iv~~L~~~  385 (408)
T d1n11a_         377 SVTDVLKVV  385 (408)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988554


No 21 
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.69  E-value=1.1e-17  Score=153.74  Aligned_cols=91  Identities=22%  Similarity=0.290  Sum_probs=82.5

Q ss_pred             ccHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCchhhhhhhccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcC
Q 003138          611 MGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDD  690 (845)
Q Consensus       611 ~TpLH~AV~~n~~eIVElLL~~gad~~~~~~~~~~k~lv~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~  690 (845)
                      +++||.|+++|+.++|++||++|+|                        +|.+|..|+||||+|+..++.+ ++++|++ 
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d------------------------~n~~d~~g~t~Lh~A~~~~~~~-~~~~ll~-   55 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDD------------------------PSLPNDEGITALHNAVCAGHTE-IVKFLVQ-   55 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSS------------------------CCCCCTTSCCHHHHHHHHTCHH-HHHHHHH-
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCC------------------------cccccccccccccccccccccc-ccccccc-
Confidence            4799999999999999999999976                        5778889999999999998765 8999964 


Q ss_pred             CCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHHhhhh
Q 003138          691 PGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINK  732 (845)
Q Consensus       691 p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~kl~~  732 (845)
                           .|+++|.+|.+|+||||+|+.+|+.+++++|+++.++
T Consensus        56 -----~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~   92 (130)
T d1ycsb1          56 -----FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA   92 (130)
T ss_dssp             -----HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             -----cccccccccccCcccccccchhhHHHHHHHHHHcCCC
Confidence                 5788999999999999999999999999999987654


No 22 
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.68  E-value=3.3e-17  Score=158.81  Aligned_cols=124  Identities=18%  Similarity=0.145  Sum_probs=103.7

Q ss_pred             cchHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCchhhh
Q 003138          568 FKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQ  647 (845)
Q Consensus       568 f~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~~~~~k~  647 (845)
                      ..+.|++++..++.++++.|++.....         ...+..|.||||+|+.+|+.+++++|++++.+            
T Consensus       105 ~~~~l~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~------------  163 (229)
T d1ixva_         105 GVTCLHLAVGKKWFEVSQFLIENGASV---------RIKDKFNQIPLHRAASVGSLKLIELLCGLGKS------------  163 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCS---------CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCC------------
T ss_pred             cccccccccccchhhhhhhhhhhcccc---------cccCCCCCCccchhhhcccccccccccccccc------------
Confidence            347899999999999999999765322         12355689999999999999999999998753            


Q ss_pred             hhhccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHH
Q 003138          648 LVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQ  727 (845)
Q Consensus       648 lv~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~  727 (845)
                                 ++|.+|..|.||||+|+..++.+ ++++|++.     .||++|++|.+|+||||||+   +.+++++|+
T Consensus       164 -----------~in~~d~~g~TpLh~A~~~~~~~-~v~~Ll~~-----~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll  223 (229)
T d1ixva_         164 -----------AVNWQDKQGWTPLFHALAEGHGD-AAVLLVEK-----YGAEYDLVDNKGAKAEDVAL---NEQVKKFFL  223 (229)
T ss_dssp             -----------CSCCCCTTSCCHHHHHHHTTCHH-HHHHHHHH-----HCCCSCCCCTTSCCTGGGCS---CHHHHHHHH
T ss_pred             -----------cccccccccCCchhhhcccccHH-HHHHHHHh-----cCCCCCCcCCCCCCHHHHHh---hHHHHHHHH
Confidence                       35788899999999999998876 89999642     47899999999999999998   457999999


Q ss_pred             Hhhhh
Q 003138          728 RKINK  732 (845)
Q Consensus       728 ~kl~~  732 (845)
                      +++.|
T Consensus       224 ~~g~d  228 (229)
T d1ixva_         224 NNVVD  228 (229)
T ss_dssp             HHCCC
T ss_pred             HcCCC
Confidence            98764


No 23 
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.68  E-value=1.6e-17  Score=162.27  Aligned_cols=148  Identities=15%  Similarity=0.059  Sum_probs=111.5

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCC--------
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDK--------  640 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~--------  640 (845)
                      +++||||+..|..++++.|++.+.         ++...+..|.||||+|+.+++.+++++|++.+.+.....        
T Consensus        40 ~TpLh~A~~~~~~~iv~~L~~~g~---------d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  110 (221)
T d1iknd_          40 QTPLHLAVITNQPEIAEALLGAGC---------DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN  110 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHCCCSCCC---------CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred             Cccccccccccccccccccccccc---------cccccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence            589999999999999999987542         233446779999999999999999999999875543211        


Q ss_pred             -CCchhhhhhhccCCcc------cccCCCC-CCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHH
Q 003138          641 -PGSRQKQLVDRAGSGF------IFKPNVI-GPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPND  712 (845)
Q Consensus       641 -~~~~~k~lv~~~~~~~------~f~pNa~-g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLH  712 (845)
                       ..+.+.+...+..+.+      ....+.. +..|.||||+|+..++.+ ++++|+      .+|||+|++|.+|+||||
T Consensus       111 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~-~v~~Ll------~~gad~~~~~~~G~tpl~  183 (221)
T d1iknd_         111 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD-LVSLLL------KCGADVNRVTYQGYSPYQ  183 (221)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH-HHHHHH------TTTCCSCCCCTTCCCGGG
T ss_pred             cchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHH-HHHHHH------hcCCcccccCCCCCCHHH
Confidence             1122332222111111      1133444 467999999999998876 899996      468999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhh
Q 003138          713 YASLRAHHSYIHLVQRKINK  732 (845)
Q Consensus       713 yAa~~Gn~e~ieLL~~kl~~  732 (845)
                      +|+.+|+.+++++|.+...+
T Consensus       184 ~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         184 LTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             GCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHCCCHHHHHHHHHcCCc
Confidence            99999999999999887554


No 24 
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.67  E-value=1.4e-16  Score=158.27  Aligned_cols=128  Identities=21%  Similarity=0.177  Sum_probs=102.1

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHH----cCCHHHHHHHHhcCCCCCCCCCCch
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVR----RNCRPMVELLLNYAPDNVLDKPGSR  644 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~----~n~~eIVElLL~~gad~~~~~~~~~  644 (845)
                      .++||+|+.+|+.++++.||+..        ++++...+..|.++++.+..    .+..+|+++||++|++         
T Consensus       149 ~t~L~~A~~~~~~~~~~~Ll~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~---------  211 (285)
T d1wdya_         149 ATALMDAAEKGHVEVLKILLDEM--------GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---------  211 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTS--------CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC---------
T ss_pred             chHHHHHHHcCCHHHHHHHHhcc--------CCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC---------
Confidence            46889999999999999998742        12233445556666665544    3345789999998876         


Q ss_pred             hhhhhhccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHH
Q 003138          645 QKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIH  724 (845)
Q Consensus       645 ~k~lv~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ie  724 (845)
                                     +|.++..|.||||+|+..++.+ ++++|++.     .|+++|++|.+|.||||+|+.+||.++++
T Consensus       212 ---------------~n~~~~~g~t~L~~a~~~~~~~-~v~~lL~~-----~g~din~~d~~G~TpL~~A~~~~~~eiv~  270 (285)
T d1wdya_         212 ---------------VNVRGERGKTPLILAVEKKHLG-LVQRLLEQ-----EHIEINDTDSDGKTALLLAVELKLKKIAE  270 (285)
T ss_dssp             ---------------SSCCCTTSCCHHHHHHHTTCHH-HHHHHHHS-----SSCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ---------------CCccCCCCCCccchhhhcCcHH-HHHHHHHc-----CCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence                           4667889999999999998876 89888753     36889999999999999999999999999


Q ss_pred             HHHHhhhhcC
Q 003138          725 LVQRKINKKS  734 (845)
Q Consensus       725 LL~~kl~~~~  734 (845)
                      +|++++++..
T Consensus       271 ~Ll~~GAd~n  280 (285)
T d1wdya_         271 LLCKRGASTD  280 (285)
T ss_dssp             HHHHHSSCSC
T ss_pred             HHHHCCCCCC
Confidence            9999999854


No 25 
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.67  E-value=1.5e-16  Score=157.92  Aligned_cols=184  Identities=22%  Similarity=0.170  Sum_probs=125.1

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC---ch-
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPG---SR-  644 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~~---~~-  644 (845)
                      +++|++|+.+|..++|++||+.+.+  ++.      ..+..|+||||+|+..|+.+||++|++++++.......   +. 
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~d--in~------~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~   77 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGAN--VNF------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCC--TTC------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCC--cCc------cCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhH
Confidence            4799999999999999999997633  321      11345999999999999999999999998766522211   10 


Q ss_pred             --------------------------------hhhhhhc-----------cC-----CcccccCCCCCCCCChHHHHHHh
Q 003138          645 --------------------------------QKQLVDR-----------AG-----SGFIFKPNVIGPAGLTPLHVAAC  676 (845)
Q Consensus       645 --------------------------------~k~lv~~-----------~~-----~~~~f~pNa~g~~G~TPLHiAA~  676 (845)
                                                      +.++..+           ..     .......+.....|.||||+|+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  157 (285)
T d1wdya_          78 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE  157 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred             HHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHH
Confidence                                            0000000           00     00000112345579999999999


Q ss_pred             CCChHHHHHHhhcCCC--------------------------------CCCcccccCCcCCCCCCHHHHHHHcCCHHHHH
Q 003138          677 RDDAENVLDALTDDPG--------------------------------SVGIEAWKSAQDSTGLTPNDYASLRAHHSYIH  724 (845)
Q Consensus       677 ~~~~e~VvelLl~~p~--------------------------------~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ie  724 (845)
                      .++.+ +++.|+++.+                                .+..|+++|.+|..|.||||+|+..|+.++++
T Consensus       158 ~~~~~-~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~  236 (285)
T d1wdya_         158 KGHVE-VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ  236 (285)
T ss_dssp             HTCHH-HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cCCHH-HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHH
Confidence            98766 7777764321                                12357788999999999999999999999998


Q ss_pred             HHHHhhhhcCCCCCceEEecCCCcccccccCCCCCCCCccccccccccchhhhhhc
Q 003138          725 LVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVMQ  780 (845)
Q Consensus       725 LL~~kl~~~~~~~~~v~l~I~~~~~~~~~~~k~~~~~~~~~i~~~~~~~~~~~~~~  780 (845)
                      +|+.+-.  .        +|         +.+..++.|+||+++..+++..++.+.
T Consensus       237 ~lL~~~g--~--------di---------n~~d~~G~TpL~~A~~~~~~eiv~~Ll  273 (285)
T d1wdya_         237 RLLEQEH--I--------EI---------NDTDSDGKTALLLAVELKLKKIAELLC  273 (285)
T ss_dssp             HHHHSSS--C--------CT---------TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHcCC--C--------CC---------cCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            8775311  1        11         113446678999999987777665554


No 26 
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.64  E-value=5.1e-16  Score=161.59  Aligned_cols=174  Identities=18%  Similarity=0.159  Sum_probs=131.5

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CC--chh
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDK-PG--SRQ  645 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~-~~--~~~  645 (845)
                      .++||+++.....++.+.|+.......         ..+..++||||.|++.++.+++++++.++.+.+... .+  +..
T Consensus       199 ~t~l~~~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~  269 (408)
T d1n11a_         199 YTPLHIAAKQNQVEVARSLLQYGGSAN---------AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH  269 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTT---------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred             CCcchhhhccchhhhhhhhhhcccccc---------ccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhh
Confidence            478999999999999999987542211         224458899999999999999999999987766332 22  322


Q ss_pred             hhhhhccCCc------ccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCC
Q 003138          646 KQLVDRAGSG------FIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAH  719 (845)
Q Consensus       646 k~lv~~~~~~------~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn  719 (845)
                      .+...+..+.      ...+++..+..+.||||+|+..++.+ +++.|++      .|+++|++|.+|.||||+|+.+|+
T Consensus       270 ~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~-~~~~ll~------~g~~in~~d~~G~T~Lh~A~~~g~  342 (408)
T d1n11a_         270 LVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK-LVKFLLQ------HQADVNAKTKLGYSPLHQAAQQGH  342 (408)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSH-HHHHHHH------TTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             hhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcce-eeeeecc------ccccccccCCCCCCHHHHHHHcCC
Confidence            2222111111      12367888889999999999998876 7888864      578999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCceEEecCCCcccccccCCCCCCCCccccccccccchhhhh
Q 003138          720 HSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKV  778 (845)
Q Consensus       720 ~e~ieLL~~kl~~~~~~~~~v~l~I~~~~~~~~~~~k~~~~~~~~~i~~~~~~~~~~~~  778 (845)
                      .+++++|+++.++-.         +           ++.++.|++|+++..|+...++.
T Consensus       343 ~~iv~~Ll~~GAd~n---------~-----------~d~~G~t~L~~A~~~~~~~iv~~  381 (408)
T d1n11a_         343 TDIVTLLLKNGASPN---------E-----------VSSDGTTPLAIAKRLGYISVTDV  381 (408)
T ss_dssp             HHHHHHHHHTTCCSC---------C-----------CCSSSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHCCCCCC---------C-----------CCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999998876532         2           44567889999999877666543


No 27 
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.63  E-value=1.6e-16  Score=144.76  Aligned_cols=119  Identities=18%  Similarity=0.175  Sum_probs=97.5

Q ss_pred             cccHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCchhhhhhhccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhc
Q 003138          610 EMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTD  689 (845)
Q Consensus       610 G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~~~~~k~lv~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~  689 (845)
                      +.++||+|+++|+.++|++||++|+|                        ||.++..|.||||+|+ .++.+ ++++|++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad------------------------~n~~~~~g~t~l~~a~-~g~~~-~v~~Ll~   56 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN------------------------PNAPNSYGRRPIQVMM-MGSAR-VAELLLL   56 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC------------------------TTCCCSSSCCTTTSSC-TTCHH-HHHHHHT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc------------------------cccccccccccccccc-ccccc-ccccccc
Confidence            34899999999999999999999986                        5778889999999775 56665 8999964


Q ss_pred             CCCCCCcccccCCcCCCCC-CHHHHHHHcCCHHHHHHHHHhhhhcCCCCCceEEecCCCcccccccCCCCCCCCcccccc
Q 003138          690 DPGSVGIEAWKSAQDSTGL-TPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLS  768 (845)
Q Consensus       690 ~p~~ig~gA~vNakD~~G~-TPLHyAa~~Gn~e~ieLL~~kl~~~~~~~~~v~l~I~~~~~~~~~~~k~~~~~~~~~i~~  768 (845)
                            .|+++|.+|..|. ||||+|+.+|+.+++++|+++..+-.         +           +...+.|+++++.
T Consensus        57 ------~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~---------~-----------~d~~G~T~l~~A~  110 (125)
T d1bi7b_          57 ------HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLD---------V-----------RDAWGRLPVDLAE  110 (125)
T ss_dssp             ------TTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS---------C-----------CCTTCCCHHHHHH
T ss_pred             ------cccccccccccccccccccccccccccccccccccccccc---------c-----------ccCCCCCHHHHHH
Confidence                  5788999999876 69999999999999999998865432         2           3345678899998


Q ss_pred             ccccchhhhhhc
Q 003138          769 LQTEKITTKVMQ  780 (845)
Q Consensus       769 ~~~~~~~~~~~~  780 (845)
                      ..|++..++.+.
T Consensus       111 ~~g~~~~v~~Ll  122 (125)
T d1bi7b_         111 ELGHRDVARYLR  122 (125)
T ss_dssp             HHTCHHHHHHHS
T ss_pred             HcCCHHHHHHHH
Confidence            887777665543


No 28 
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.63  E-value=7e-17  Score=166.56  Aligned_cols=45  Identities=18%  Similarity=-0.021  Sum_probs=36.3

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCC
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNC  622 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~  622 (845)
                      +++||+|+..|+.++|+.||+.+  +       ++..++..|+||||.||..++
T Consensus       108 ~T~LH~Aa~~g~~~~v~~Ll~~g--a-------d~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_         108 NTPLHWLTSIANLELVKHLVKHG--S-------NRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT--C-------CTTBCCTTCCCHHHHHHHSSH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCC--C-------CCCcCCcccccHHHHhhhccc
Confidence            48999999999999999999765  2       233456779999999998765


No 29 
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.61  E-value=9.7e-16  Score=157.93  Aligned_cols=143  Identities=13%  Similarity=-0.009  Sum_probs=97.4

Q ss_pred             hhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCC---CCchhhhhhhcc---CCc-------ccccCCCCCCCCChHHHH
Q 003138          607 AILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDK---PGSRQKQLVDRA---GSG-------FIFKPNVIGPAGLTPLHV  673 (845)
Q Consensus       607 ~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~---~~~~~k~lv~~~---~~~-------~~f~pNa~g~~G~TPLHi  673 (845)
                      |..|.||||+|++.|+.+||++||++|+|++...   ..|++.++..+.   .+.       ..-..+.+|..|+||||+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~  183 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  183 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHH
Confidence            5679999999999999999999999999987433   336665543210   111       111356678889999998


Q ss_pred             HHhCCCh-----------HHHHHHhhcCCCCC-------------------------------CcccccCCcCCCCCCHH
Q 003138          674 AACRDDA-----------ENVLDALTDDPGSV-------------------------------GIEAWKSAQDSTGLTPN  711 (845)
Q Consensus       674 AA~~~~~-----------e~VvelLl~~p~~i-------------------------------g~gA~vNakD~~G~TPL  711 (845)
                      |+..+..           +.++..|.......                               .++..+|++|.+|+|||
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpL  263 (301)
T d1sw6a_         184 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL  263 (301)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHH
T ss_pred             HHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHH
Confidence            8865432           22333332211100                               01222799999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhhhhcCCCCCceEEecCCCcccccccCCCCCCCCccccccc
Q 003138          712 DYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSL  769 (845)
Q Consensus       712 HyAa~~Gn~e~ieLL~~kl~~~~~~~~~v~l~I~~~~~~~~~~~k~~~~~~~~~i~~~  769 (845)
                      |+|+++|+.+++++|+++.++-.         |           ++..+.|+++.+++
T Consensus       264 h~A~~~g~~~iv~~Ll~~GAd~~---------~-----------~n~~G~Tpl~~A~~  301 (301)
T d1sw6a_         264 NIAARLGNISIVDALLDYGADPF---------I-----------ANKSGLRPVDFGAG  301 (301)
T ss_dssp             HHHHHHCCHHHHHHHHHTTCCTT---------C-----------CCTTSCCGGGGTCC
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCC---------C-----------CCCCCCCHHHHcCC
Confidence            99999999999999998877643         2           33456778887753


No 30 
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=99.60  E-value=3.8e-16  Score=156.58  Aligned_cols=62  Identities=24%  Similarity=0.209  Sum_probs=51.9

Q ss_pred             cCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHHhhh
Q 003138          659 KPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKIN  731 (845)
Q Consensus       659 ~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~kl~  731 (845)
                      ++|.++..|.||||+|+..++.+ ++++|++      .|||+|++|.+|+||||||+.    +++++|.....
T Consensus       224 din~~~~~g~TpL~~A~~~g~~~-iv~lLl~------~Gadv~~~d~~G~TaL~~A~e----~~~~~L~~~~~  285 (291)
T d1s70b_         224 DVNIKDYDGWTPLHAAAHWGKEE-ACRILVE------NLCDMEAVNKVGQTAFDVADE----DILGYLEELQK  285 (291)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHH-HHHHHHH------TTCCTTCCCTTSCCTTTSCCS----GGGHHHHHHHH
T ss_pred             cccccccCCCCHHHHHHHcCCHH-HHHHHHH------CCCCCCCcCCCCCCHHHHHHH----HHHHHHHHHhh
Confidence            57888999999999999999876 8999965      589999999999999999985    45566655433


No 31 
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.60  E-value=3.3e-16  Score=146.02  Aligned_cols=149  Identities=19%  Similarity=0.096  Sum_probs=91.8

Q ss_pred             chHHHHHHhCCCHHHHHHHHHhhhcCCcCCC-CCCc---------------------------hhhhhccccHHHHHHHc
Q 003138          569 KWLLEFSMEHDWCAVVKKLLGILFDGTVDTG-DHTS---------------------------SELAILEMGLLHKAVRR  620 (845)
Q Consensus       569 ~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~-~~s~---------------------------~~~~~~G~TpLH~AV~~  620 (845)
                      .++||+|+..|..++++.||+.+...+.... +...                           ........++||.+...
T Consensus        41 ~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  120 (228)
T d1k1aa_          41 QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT  120 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH
T ss_pred             Cccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhcccccccccccccccccccccccccc
Confidence            3799999999999999999987644222100 0000                           00001123555555555


Q ss_pred             CCHHHHHHHHhcCCCCCCCC----CCchhhhhhhccCCc------ccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcC
Q 003138          621 NCRPMVELLLNYAPDNVLDK----PGSRQKQLVDRAGSG------FIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDD  690 (845)
Q Consensus       621 n~~eIVElLL~~gad~~~~~----~~~~~k~lv~~~~~~------~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~  690 (845)
                      ......+.|+....+.....    ..+...++.......      ....++.++..|.||||+|+..++.+ ++++|++ 
T Consensus       121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~-~v~~Ll~-  198 (228)
T d1k1aa_         121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP-LVRTLVR-  198 (228)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH-HHHHHHH-
T ss_pred             ccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHH-HHHHHHH-
Confidence            55555555554433322111    011121111110000      01246778899999999999998876 8999964 


Q ss_pred             CCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHH
Q 003138          691 PGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIH  724 (845)
Q Consensus       691 p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ie  724 (845)
                           .|||+|++|.+|+||||||+.+|+.++++
T Consensus       199 -----~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         199 -----SGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             -----TTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             -----CCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence                 57899999999999999999999887663


No 32 
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}
Probab=99.58  E-value=6.2e-17  Score=171.33  Aligned_cols=133  Identities=16%  Similarity=0.108  Sum_probs=99.4

Q ss_pred             cchHHHHHHhCCCHHHHHHHHHhhhcCCcCCCCCCchhhhhccccHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCchhhh
Q 003138          568 FKWLLEFSMEHDWCAVVKKLLGILFDGTVDTGDHTSSELAILEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQ  647 (845)
Q Consensus       568 f~~LL~fAve~g~~aVVk~LLd~l~~~~v~~~~~s~~~~~~~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~~~~~k~  647 (845)
                      -+++|++|+++|+.++++.+-. +..     .+++++.++..|+||||+|+++|+.++|++|+++|++++.         
T Consensus        90 ~~t~L~~Aa~~g~~~~~~~~~~-L~~-----~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~---------  154 (346)
T d2ajaa1          90 SEVICFVAAITGCSSALDTLCL-LLT-----SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM---------  154 (346)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTT-C-------CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH---------
T ss_pred             CCcHHHHHHHhCCHHHHHHHHH-HHh-----CCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc---------
Confidence            3589999999999988776421 111     1234446677899999999999999999999999987420         


Q ss_pred             hhhccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHH
Q 003138          648 LVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQ  727 (845)
Q Consensus       648 lv~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~  727 (845)
                                   ...+.+|.||||+||..|+.+ |+++|++....   ..+++.++.+|.||+|+|+.+||.+++++|+
T Consensus       155 -------------~~~~~~g~t~L~~Aa~~g~~~-iv~~Ll~~~~~---~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll  217 (346)
T d2ajaa1         155 -------------AMIQAENYHAFRLAAENGHLH-VLNRLCELAPT---EATAMIQAENYYAFRWAAVGRGHHNVINFLL  217 (346)
T ss_dssp             -------------HHHSHHHHHHHHHHHHTTCHH-HHHHHHHSCGG---GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHT
T ss_pred             -------------cccccCCCChhHHHHHHhhHH-HHHHHHHcCCc---ccccccccCCCcchhhHHhhcCHHHHHHHHH
Confidence                         111236999999999998876 99999764211   1234566778889999999999999999998


Q ss_pred             Hhhhh
Q 003138          728 RKINK  732 (845)
Q Consensus       728 ~kl~~  732 (845)
                      ++.++
T Consensus       218 ~~ga~  222 (346)
T d2ajaa1         218 DCPVM  222 (346)
T ss_dssp             TSHHH
T ss_pred             hCCCC
Confidence            77654


No 33 
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.56  E-value=3.7e-15  Score=136.76  Aligned_cols=137  Identities=18%  Similarity=0.163  Sum_probs=90.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCchhhhhhhccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhhcCC
Q 003138          612 GLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALTDDP  691 (845)
Q Consensus       612 TpLH~AV~~n~~eIVElLL~~gad~~~~~~~~~~k~lv~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl~~p  691 (845)
                      ++||+|+..|+.++|++||++|+|                        +|.+|..|.||||+|+ .++.+ ++++|++  
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d------------------------~n~~d~~g~TpL~~A~-~~~~e-i~~~Ll~--   54 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN------------------------VNAQNGFGRTALQVMK-LGNPE-IARRLLL--   54 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC------------------------TTCCCTTSCCHHHHCC-SSCHH-HHHHHHH--
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC------------------------cCccCCcccccccccc-ccccc-ccccccc--
Confidence            899999999999999999999987                        4666777888888775 45554 7777754  


Q ss_pred             CCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHHhhhhcC--CCCCceEEecC---CCcc-------c--ccccCCC
Q 003138          692 GSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKS--SESGRVILDIP---GSIV-------D--WDSKQKP  757 (845)
Q Consensus       692 ~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~kl~~~~--~~~~~v~l~I~---~~~~-------~--~~~~~k~  757 (845)
                          .|++++.+|.+|.||+++++..|+..+++.|+++..+..  ...+...+.+.   +...       .  .....+.
T Consensus        55 ----~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d  130 (156)
T d1ihba_          55 ----RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN  130 (156)
T ss_dssp             ----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC
T ss_pred             ----cccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence                356777777778888888887777777777766533211  01222222111   0000       0  0223444


Q ss_pred             CCCCCccccccccccchhhhhhc
Q 003138          758 LKGNKSSRVLSLQTEKITTKVMQ  780 (845)
Q Consensus       758 ~~~~~~~~i~~~~~~~~~~~~~~  780 (845)
                      ..+.|++|++...++..+++.+.
T Consensus       131 ~~g~TpL~~A~~~~~~~iv~~Ll  153 (156)
T d1ihba_         131 HKGDTACDLARLYGRNEVVSLMQ  153 (156)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHH
Confidence            55678999999877777666554


No 34 
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}
Probab=99.55  E-value=1.9e-16  Score=156.53  Aligned_cols=99  Identities=12%  Similarity=0.040  Sum_probs=81.2

Q ss_pred             ccccHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCchhhhhhhccCCcccccCCCCCCCCChHHHHHHhCCChHHHHHHhh
Q 003138          609 LEMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAENVLDALT  688 (845)
Q Consensus       609 ~G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~~~~~k~lv~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e~VvelLl  688 (845)
                      .|+||||+||.+|+.++|++||.+...          ..+..      ..++|.+|..|.||||+|+..++.+ ++++|+
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~----------~~l~~------Gadvn~~d~~G~TpLh~A~~~g~~~-iv~~Ll   94 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAK----------ECIAA------GADVNAMDCDENTPLMLAVLARRRR-LVAYLM   94 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHH----------HHHHT------CCCTTCCCTTSCCHHHHHHHHTCHH-HHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchh----------HHHHc------CCCccccCCCCCeeecccccccccc-cccccc
Confidence            599999999999999999999765321          00000      1247889999999999999998775 899996


Q ss_pred             cCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHHhh
Q 003138          689 DDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKI  730 (845)
Q Consensus       689 ~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~kl  730 (845)
                      +      .||++|.+|.+|.||||+|...|+.++.+.+....
T Consensus        95 ~------~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  130 (277)
T d2fo1e1          95 K------AGADPTIYNKSERSALHQAAANRDFGMMVYMLNST  130 (277)
T ss_dssp             H------TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSH
T ss_pred             c------cccccccccccccccccchhhhcchhhhhhhhhcc
Confidence            5      57899999999999999999999999988876553


No 35 
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.51  E-value=2.1e-14  Score=131.17  Aligned_cols=141  Identities=16%  Similarity=0.092  Sum_probs=103.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC--chhhhhhhccCCc------ccccCCCCCCCCChHHHHHHhCCChHHH
Q 003138          612 GLLHKAVRRNCRPMVELLLNYAPDNVLDKPG--SRQKQLVDRAGSG------FIFKPNVIGPAGLTPLHVAACRDDAENV  683 (845)
Q Consensus       612 TpLH~AV~~n~~eIVElLL~~gad~~~~~~~--~~~k~lv~~~~~~------~~f~pNa~g~~G~TPLHiAA~~~~~e~V  683 (845)
                      ||||.||+.|+.++|++||++|++.+.+..+  |++++......+.      .....+.....+.|++|.++...+.+ +
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   82 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN-I   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH-H
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcccccCCCccccccccccccccccccccccccccccccccccccccccccccce-e
Confidence            9999999999999999999999987644333  5544332221111      01123445567888888888877665 7


Q ss_pred             HHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHHhhhhcCCCCCceEEecCCCcccccccCCCCCCCCc
Q 003138          684 LDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKS  763 (845)
Q Consensus       684 velLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~kl~~~~~~~~~v~l~I~~~~~~~~~~~k~~~~~~~  763 (845)
                      ++.|..      .+++.+.+|.+|+||||+|+..|+.+++++|+++..+-.         +           +...+.|+
T Consensus        83 ~~~l~~------~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~---------~-----------~d~~g~Tp  136 (153)
T d1awcb_          83 VEVLLK------HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH---------T-----------QSKFCKTA  136 (153)
T ss_dssp             HHHHHT------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------C-----------CCTTSCCH
T ss_pred             eecccc------cCCccccccccCchHHHhhhhcchhheeeeccccccCCc---------c-----------cCCCCCCH
Confidence            888854      567889999999999999999999999999987755322         1           33456788


Q ss_pred             cccccccccchhhhhh
Q 003138          764 SRVLSLQTEKITTKVM  779 (845)
Q Consensus       764 ~~i~~~~~~~~~~~~~  779 (845)
                      ++++...|+..+++.+
T Consensus       137 l~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         137 FDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHhC
Confidence            9999998877776543


No 36 
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.47  E-value=5.5e-14  Score=133.72  Aligned_cols=127  Identities=15%  Similarity=0.072  Sum_probs=97.6

Q ss_pred             cccHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCchhhhhhhccCCcccccCCCCCCCCChHHHHHHhCC--ChHHHHHHh
Q 003138          610 EMGLLHKAVRRNCRPMVELLLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRD--DAENVLDAL  687 (845)
Q Consensus       610 G~TpLH~AV~~n~~eIVElLL~~gad~~~~~~~~~~k~lv~~~~~~~~f~pNa~g~~G~TPLHiAA~~~--~~e~VvelL  687 (845)
                      .+..|+.|++.++...+..++..|+|.+.                  .......+..|.||||+|+..+  +..+++++|
T Consensus         6 ~l~~L~~Av~~~dl~~l~~~~~~g~d~~~------------------~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~L   67 (154)
T d1dcqa1           6 KLHSLCEAVKTRDIFGLLQAYADGVDLTE------------------KIPLANGHEPDETALHLAVRSVDRTSLHIVDFL   67 (154)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTS------------------BCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHcCCCcCC------------------CCCcccCCCCCCchHHHHHHhcCCCCHHHHHHH
Confidence            34678899999999999999999987541                  1112344567999999999753  233589999


Q ss_pred             hcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHHhhhhcCCCCCceEEecCCCcccccccCCCCCCCCccccc
Q 003138          688 TDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVL  767 (845)
Q Consensus       688 l~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~kl~~~~~~~~~v~l~I~~~~~~~~~~~k~~~~~~~~~i~  767 (845)
                      ++      .|+++|.+|.+|+||||||+..|+.+++++|+++.++-.         +           ++..+.|++|++
T Consensus        68 l~------~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~---------~-----------~d~~g~tpL~~A  121 (154)
T d1dcqa1          68 VQ------NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE---------I-----------ANESGETPLDIA  121 (154)
T ss_dssp             HH------HCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT---------C-----------CCTTSCCHHHHH
T ss_pred             HH------cCCChhhhhhhhccccccccccccccccccccccCcccc---------c-----------cCCCCCCHHHHH
Confidence            64      578999999999999999999999999999988755422         2           334667899999


Q ss_pred             cccccchhhhhhc
Q 003138          768 SLQTEKITTKVMQ  780 (845)
Q Consensus       768 ~~~~~~~~~~~~~  780 (845)
                      ...++..+++.+.
T Consensus       122 ~~~~~~~i~~~L~  134 (154)
T d1dcqa1         122 KRLKHEHCEELLT  134 (154)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHH
Confidence            9877766665554


No 37 
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}
Probab=99.47  E-value=1.3e-15  Score=161.17  Aligned_cols=96  Identities=15%  Similarity=0.125  Sum_probs=78.2

Q ss_pred             hhhhccccHHHHHHHcCCHHHHHH---HHhcCCCCCCCCCCchhhhhhhccCCcccccCCCCCCCCChHHHHHHhCCChH
Q 003138          605 ELAILEMGLLHKAVRRNCRPMVEL---LLNYAPDNVLDKPGSRQKQLVDRAGSGFIFKPNVIGPAGLTPLHVAACRDDAE  681 (845)
Q Consensus       605 ~~~~~G~TpLH~AV~~n~~eIVEl---LL~~gad~~~~~~~~~~k~lv~~~~~~~~f~pNa~g~~G~TPLHiAA~~~~~e  681 (845)
                      .++..|.||||+|+++|+.++|++   |+++|++                        +|.++..|+||||+||..|+.+
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~------------------------in~~~~~g~taL~~Aa~~G~~~  140 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI------------------------VKVIQAENYQAFRLAAENGHLH  140 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS------------------------CC--CHHHHHHHHHHHHTTCHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc------------------------ccccCCCCCCHHHHHHHCCCHH
Confidence            345568899999999999887765   7888875                        5777889999999999999876


Q ss_pred             HHHHHhhcCCCCCCcccccCCcC--CCCCCHHHHHHHcCCHHHHHHHHHhhh
Q 003138          682 NVLDALTDDPGSVGIEAWKSAQD--STGLTPNDYASLRAHHSYIHLVQRKIN  731 (845)
Q Consensus       682 ~VvelLl~~p~~ig~gA~vNakD--~~G~TPLHyAa~~Gn~e~ieLL~~kl~  731 (845)
                       ++++|++      .|++++.+|  .+|+||||+|+.+||.+++++|+++..
T Consensus       141 -~v~~Ll~------~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~  185 (346)
T d2ajaa1         141 -VLNRLCE------LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP  185 (346)
T ss_dssp             -HHHHHHH------SCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCG
T ss_pred             -HHHHHHH------cCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCC
Confidence             9999964      577888876  469999999999999999999987654


No 38 
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.42  E-value=1.7e-13  Score=127.07  Aligned_cols=142  Identities=18%  Similarity=0.138  Sum_probs=103.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHhc-CCCCCCCC---CCchhhhhhhccCCc------ccccCCCCCCCCChHHHHHHhCCChH
Q 003138          612 GLLHKAVRRNCRPMVELLLNY-APDNVLDK---PGSRQKQLVDRAGSG------FIFKPNVIGPAGLTPLHVAACRDDAE  681 (845)
Q Consensus       612 TpLH~AV~~n~~eIVElLL~~-gad~~~~~---~~~~~k~lv~~~~~~------~~f~pNa~g~~G~TPLHiAA~~~~~e  681 (845)
                      +.||.||.+|+.++|+.||.. +++.+...   ..|.+.++. +..+.      ...++|..+..|.+|||+|+..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            569999999999999999975 66665322   224433211 10000      12368888899999999999998776


Q ss_pred             HHHHHhhcCCCCCCcccccCCcCCCCCCHHHHHHHcCCHHHHHHHHHhhhhcCCCCCceEEecCCCcccccccCCCCCCC
Q 003138          682 NVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGN  761 (845)
Q Consensus       682 ~VvelLl~~p~~ig~gA~vNakD~~G~TPLHyAa~~Gn~e~ieLL~~kl~~~~~~~~~v~l~I~~~~~~~~~~~k~~~~~  761 (845)
                       +++.+++      .++++|.+|.+|+||||+|+..|+.+++++|+.+.+ -         .+           +...+.
T Consensus        83 -~~~~~l~------~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~-~---------~~-----------~d~~G~  134 (156)
T d1bd8a_          83 -TLKVLVE------HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD-L---------HR-----------RDARGL  134 (156)
T ss_dssp             -HHHHHHH------TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSC-T---------TC-----------CCTTSC
T ss_pred             -ccccccc------cccccccccCCCCeeecccccccccccccccccccc-c---------cc-----------cCCCCC
Confidence             8888854      467889999999999999999999999998874321 1         11           334567


Q ss_pred             Cccccccccccchhhhhhccc
Q 003138          762 KSSRVLSLQTEKITTKVMQQQ  782 (845)
Q Consensus       762 ~~~~i~~~~~~~~~~~~~~~~  782 (845)
                      |+++++...|++.+++.+..|
T Consensus       135 TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         135 TPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHSCCHHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHhh
Confidence            899999998888777766543


No 39 
>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.39  E-value=1.5e-14  Score=124.89  Aligned_cols=34  Identities=74%  Similarity=1.173  Sum_probs=33.1

Q ss_pred             CCCCccCccccCCcchHHHHhhhhhhccCCCCCC
Q 003138            1 MGRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPD   34 (845)
Q Consensus         1 c~rfh~l~~f~~~krscr~~l~~h~~rrr~~~~~   34 (845)
                      |||||+|+|||++|||||+||++||+||||+++|
T Consensus        48 C~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_          48 CSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             TSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             hcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            9999999999999999999999999999999886


No 40 
>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.38  E-value=1.6e-14  Score=125.89  Aligned_cols=37  Identities=54%  Similarity=0.988  Sum_probs=35.2

Q ss_pred             CCCCccCccccCCcchHHHHhhhhhhccCCCCCCCcC
Q 003138            1 MGRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDNVV   37 (845)
Q Consensus         1 c~rfh~l~~f~~~krscr~~l~~h~~rrr~~~~~~~~   37 (845)
                      |||||+|+|||++|||||+||++||+||||++++...
T Consensus        48 C~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~~~g   84 (86)
T d1ul5a_          48 CGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPVDKGG   84 (86)
T ss_dssp             TSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSCSSCC
T ss_pred             hccccChhhhccccccHHHHHHHHHHHhccCCccccc
Confidence            9999999999999999999999999999999998654


No 41 
>d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D {Bacillus stearothermophilus [TaxId: 1422]}
Probab=82.33  E-value=2.3  Score=34.32  Aligned_cols=77  Identities=16%  Similarity=0.197  Sum_probs=50.6

Q ss_pred             CceeeeeeceeeecCCceEEEEEeccCCCCCceEEEEecCceeeeeeeecCCCCCccccccccceecccccCCCC-CCCc
Q 003138          398 SCRISSIKPIAVPVSERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPN-VFGR  476 (845)
Q Consensus       398 ~p~i~~V~P~Av~ag~~~~~~v~G~NL~~p~~rllc~~~G~Yl~~e~~~~~~~g~~a~~~~~~~~~~~f~~~~P~-~~G~  476 (845)
                      -|.|.+|.|..-.+|  ..+.+.|.|+.....+  |.+.|.-.  ++...         ...+|.|     ..|. ..|.
T Consensus         3 ~P~I~si~P~~g~~G--t~VtI~G~~F~~~~~~--v~~g~~~~--~v~~~---------s~t~I~c-----~vP~~~~g~   62 (81)
T d1qhoa1           3 APQIGSVAPNMGIPG--NVVTIDGKGFGTTQGT--VTFGGVTA--TVKSW---------TSNRIEV-----YVPNMAAGL   62 (81)
T ss_dssp             SCEEEEEESSEECTT--CEEEEEEECCCSSCCE--EEETTEEC--CEEEE---------CSSEEEE-----ECCSCCCEE
T ss_pred             CCEEeEEECCCCCCC--CEEEEEEECCCCCCeE--EEECCEEE--EEEEE---------CCCEEEE-----EeCCCCCce
Confidence            479999999987755  5699999999654443  55665332  22210         1334444     4444 3588


Q ss_pred             eEEEeccCCcCCCceeee
Q 003138          477 GFIEVEDHGLSSSFVPFI  494 (845)
Q Consensus       477 ~fIEVE~~g~~S~~~P~l  494 (845)
                      .-|.|..+|..++.+.|-
T Consensus        63 ~~v~V~~~g~~s~~~~F~   80 (81)
T d1qhoa1          63 TDVKVTAGGVSSNLYSYN   80 (81)
T ss_dssp             EEEEEEETTEECCCEEEE
T ss_pred             EEEEEEECCEEcccEEeE
Confidence            888898888888877664


No 42 
>d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription activator 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.47  E-value=2.5  Score=34.06  Aligned_cols=69  Identities=13%  Similarity=0.121  Sum_probs=47.9

Q ss_pred             eeeeeceeeecCCceEEEEEeccCCCCCceEEEEecCceeeeeeeecCCCCCccccccccceecccccCCCCCCCceEEE
Q 003138          401 ISSIKPIAVPVSERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPNVFGRGFIE  480 (845)
Q Consensus       401 i~~V~P~Av~ag~~~~~~v~G~NL~~p~~rllc~~~G~Yl~~e~~~~~~~g~~a~~~~~~~~~~~f~~~~P~~~G~~fIE  480 (845)
                      |..|+|-.=....-+.+.|.|.|+.. +..+.|+|.+......+..           ...+.|..    +|...|.+-||
T Consensus         2 It~isP~~G~~~GGt~V~I~G~~f~~-~~~~~c~fG~~~~~~~~vs-----------~~~i~C~t----P~~~~G~v~v~   65 (82)
T d2cxka1           2 VTDYSPEWSYPEGGVKVLITGPWQEA-SNNYSCLFDQISVPASLIQ-----------PGVLRCYC----PAHDTGLVTLQ   65 (82)
T ss_dssp             CCEEECSEECTTCCCEEEEESSCCCC-SSCEEEEETTEEEECEEEE-----------TTEEEEEC----CCCCSEEEEEE
T ss_pred             EeEEcCCceeCCCCEEEEEEEccccc-cceEEEEEEeeecceEEEe-----------eeEEEEEc----CcccceeEEEE
Confidence            67899999999999999999999864 5689999987544333221           23444432    23446777778


Q ss_pred             eccCC
Q 003138          481 VEDHG  485 (845)
Q Consensus       481 VE~~g  485 (845)
                      |-.+|
T Consensus        66 Vs~ng   70 (82)
T d2cxka1          66 VAFNN   70 (82)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            77665


No 43 
>d1pbya3 b.1.18.14 (A:274-351) Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 {Paracoccus denitrificans [TaxId: 266]}
Probab=71.80  E-value=1.6  Score=36.19  Aligned_cols=29  Identities=17%  Similarity=0.377  Sum_probs=27.1

Q ss_pred             CceeeeeeceeeecCCceEEEEEeccCCC
Q 003138          398 SCRISSIKPIAVPVSERVKFVVKGFNLSR  426 (845)
Q Consensus       398 ~p~i~~V~P~Av~ag~~~~~~v~G~NL~~  426 (845)
                      -|+|+.|+|-.+-+|+.+++++-|.||..
T Consensus         2 ap~llAV~P~~lKaGe~~~l~ivG~gL~g   30 (78)
T d1pbya3           2 APQVLAVAPARLKIGEETQLRVAGTGLGS   30 (78)
T ss_dssp             SSEEEEEESCEEETTCCEEEEEEEESCCS
T ss_pred             CceEEEEChhHccCCCccEEEEEeccccc
Confidence            37999999999999999999999999965


No 44 
>d1jmxa3 b.1.18.14 (A:282-363) Quinohemoprotein amine dehydrogenase A chain, domains 4 and 5 {Pseudomonas putida [TaxId: 303]}
Probab=69.60  E-value=1.9  Score=35.85  Aligned_cols=29  Identities=14%  Similarity=0.328  Sum_probs=27.1

Q ss_pred             ceeeeeeceeeecCCceEEEEEeccCCCC
Q 003138          399 CRISSIKPIAVPVSERVKFVVKGFNLSRS  427 (845)
Q Consensus       399 p~i~~V~P~Av~ag~~~~~~v~G~NL~~p  427 (845)
                      |+|..|.|..+-.|..+++++.|.||...
T Consensus         3 ~rl~aV~P~g~q~G~~~evti~G~~L~~~   31 (82)
T d1jmxa3           3 ARLLAVQPAFIKAGGESEITLVGSGLAGK   31 (82)
T ss_dssp             CEEEEEESSEEETTCEEEEEEEEESCCSC
T ss_pred             ceEEEECCCccCCCCEEEEEEEecccCCc
Confidence            69999999999999999999999999663


No 45 
>d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotransferase, domain D {Thermoanaerobacterium [TaxId: 28895]}
Probab=55.70  E-value=24  Score=28.25  Aligned_cols=73  Identities=15%  Similarity=0.211  Sum_probs=45.4

Q ss_pred             CceeeeeeceeeecCCceEEEEEeccCCCCCceEEEEecCceeeeeeeecCCCCCccccccccceecccccCCCCC-CCc
Q 003138          398 SCRISSIKPIAVPVSERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPNV-FGR  476 (845)
Q Consensus       398 ~p~i~~V~P~Av~ag~~~~~~v~G~NL~~p~~rllc~~~G~Yl~~e~~~~~~~g~~a~~~~~~~~~~~f~~~~P~~-~G~  476 (845)
                      -|.|.+|.|..-.+|  ..+.+.|.|+.....+  +.+.|.-.  .+...  .       ..+|.     |..|.. .|.
T Consensus         3 tP~I~sisP~~g~~G--t~VtI~G~~F~~~~~~--V~ig~~~~--~v~~~--s-------~t~I~-----~~vP~~~~g~   62 (83)
T d3bmva1           3 SPLIGHVGPTMTKAG--QTITIDGRGFGTTSGQ--VLFGSTAG--TIVSW--D-------DTEVK-----VKVPSVTPGK   62 (83)
T ss_dssp             CCEEEEEECSEECTT--CEEEEEEECCCSSCCE--EEETTEEC--EEEEE--C-------SSEEE-----EECCCCCSEE
T ss_pred             CCEEeEEeCCCCCCC--CEEEEEecCCCCCcce--EEECCEEE--EEEEE--C-------CCEEE-----EEeCCCCCce
Confidence            479999999988775  5789999999665555  45666432  22220  1       23333     445543 577


Q ss_pred             eEEEecc-CCcCCCc
Q 003138          477 GFIEVED-HGLSSSF  490 (845)
Q Consensus       477 ~fIEVE~-~g~~S~~  490 (845)
                      +-|.|.+ +|..++.
T Consensus        63 ~~v~V~~~~g~~s~~   77 (83)
T d3bmva1          63 YNISLKTSSGATSNT   77 (83)
T ss_dssp             EEEEEECTTCCBCCC
T ss_pred             EEEEEEeCCCcEecc
Confidence            7777766 5555543


No 46 
>d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotransferase, domain D {Bacillus circulans, different strains [TaxId: 1397]}
Probab=54.45  E-value=14  Score=29.74  Aligned_cols=33  Identities=15%  Similarity=0.269  Sum_probs=26.7

Q ss_pred             ceeeeeeceeeecCCceEEEEEeccCCCCCceEEE
Q 003138          399 CRISSIKPIAVPVSERVKFVVKGFNLSRSTTRLLC  433 (845)
Q Consensus       399 p~i~~V~P~Av~ag~~~~~~v~G~NL~~p~~rllc  433 (845)
                      |.|.+|+|..-.+|  ..+.+.|.|+.....++.+
T Consensus         3 P~I~sisP~~g~~G--t~VTI~G~~F~~~~~~V~v   35 (87)
T d1cxla1           3 PTIGHVGPMMAKPG--VTITIDGRGFGSSKGTVYF   35 (87)
T ss_dssp             CEEEEEECSEECTT--CEEEEEEECCCSSCCEEEE
T ss_pred             CEEEEEeCCCCCCC--CEEEEEEECCCCCCceEEE
Confidence            69999999988766  6799999999765566655


No 47 
>d1cyga1 b.1.18.2 (A:492-574) Cyclomaltodextrin glycanotransferase, domain D {Bacillus stearothermophilus [TaxId: 1422]}
Probab=40.78  E-value=50  Score=26.14  Aligned_cols=70  Identities=20%  Similarity=0.314  Sum_probs=43.3

Q ss_pred             ceeeeeeceeeecCCceEEEEEeccCCCCCceEEEEecCceeeeeeeecCCCCCccccccccceecccccCCCCC-CCce
Q 003138          399 CRISSIKPIAVPVSERVKFVVKGFNLSRSTTRLLCAIEGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPNV-FGRG  477 (845)
Q Consensus       399 p~i~~V~P~Av~ag~~~~~~v~G~NL~~p~~rllc~~~G~Yl~~e~~~~~~~g~~a~~~~~~~~~~~f~~~~P~~-~G~~  477 (845)
                      |.|.+|+|..-..|  ..+.+.|.|+.....++  .+.|.  .+++..  ..       ...|.     |..|.. .|..
T Consensus         4 P~I~sisP~~g~~G--t~VtI~G~~F~~~~~~V--~ig~~--~~~v~~--~s-------~t~I~-----~~vP~~~~G~~   63 (83)
T d1cyga1           4 PIIGHVGPMMGQVG--HQVTIDGEGFGTNTGTV--KFGTT--AANVVS--WS-------NNQIV-----VAVPNVSPGKY   63 (83)
T ss_dssp             CEEEEEECSEECTT--CEEEEEEECCCSSCCEE--EETTE--ECCEEE--CC-------SSEEE-----EECCSCCSEEE
T ss_pred             CEEEEEECCCCCCC--CEEEEEEcccCCCccEE--EECCE--EEEEEE--eC-------CCEEE-----EEEeCCCCccE
Confidence            79999999977665  57889999997666664  45553  222222  11       22333     455654 4777


Q ss_pred             EEEecc-CCcCC
Q 003138          478 FIEVED-HGLSS  488 (845)
Q Consensus       478 fIEVE~-~g~~S  488 (845)
                      -|.|.. +|..+
T Consensus        64 ~V~V~~~~g~~s   75 (83)
T d1cyga1          64 NITVQSSSGQTS   75 (83)
T ss_dssp             EEEEECTTSCBC
T ss_pred             EEEEEECCCcEE
Confidence            777766 34333


No 48 
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.52  E-value=82  Score=25.84  Aligned_cols=51  Identities=16%  Similarity=0.195  Sum_probs=34.5

Q ss_pred             ccccccceeEEEEe------cCCCCCCchHHHHHHHHHHHccCC---------------CCcccc-ccCCCee
Q 003138          279 GEAQSRTDRIVFKL------FGKDPNDFPLVLRRQILDWLSHSP---------------TDIESY-IRPGCIV  329 (845)
Q Consensus       279 ~d~q~rT~RIsfKL------F~~~P~dfP~~LR~QI~~WLs~~P---------------~~lEgY-IRPGCvi  329 (845)
                      ..+..++.+|-+|-      |..+|++==.+|+++|..-+.--|               ..|+.| |.+||+|
T Consensus        26 ~~~~~~~i~V~Vk~~~~~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I   98 (103)
T d1j8ca_          26 APAEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTV   98 (103)
T ss_dssp             CCCCCCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEE
T ss_pred             CCCCCCeEEEEEECCCccEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEE
Confidence            34456667777763      455677777899999998764222               346777 8888876


No 49 
>d1uadc_ b.1.18.18 (C:) Exocyst complex component Sec5, Ral-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.80  E-value=46  Score=26.83  Aligned_cols=38  Identities=24%  Similarity=0.247  Sum_probs=29.3

Q ss_pred             ceeeeeeceeeecCCceEEEEEeccCCCCCce-EEEEecCc
Q 003138          399 CRISSIKPIAVPVSERVKFVVKGFNLSRSTTR-LLCAIEGS  438 (845)
Q Consensus       399 p~i~~V~P~Av~ag~~~~~~v~G~NL~~p~~r-llc~~~G~  438 (845)
                      |.|.+|.|..-.  .-+.+.++|.||..-... ..+.+.|.
T Consensus         5 P~ItsisP~~G~--gGT~VTI~G~~f~~~~s~~~~V~v~g~   43 (92)
T d1uadc_           5 PLVTGISPNEGI--PWTKVTIRGENLGTGPTDLIGLTICGH   43 (92)
T ss_dssp             CEEEEEESSEES--TTCEEEEEEECSCSSGGGEEEEEETTE
T ss_pred             CEEeEEeCCCCC--CCcEEEEEEECCCCCCCcceEEEEecc
Confidence            799999999875  458899999999775543 45666664


No 50 
>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.72  E-value=69  Score=26.00  Aligned_cols=78  Identities=19%  Similarity=0.241  Sum_probs=52.6

Q ss_pred             eecCCceEEEEEeccCCCCCceEEEEe-cCceeeeeeeecCCCCCccccccccceecccccCCCCCCCceEEEeccCC--
Q 003138          409 VPVSERVKFVVKGFNLSRSTTRLLCAI-EGSYLVQETCYDLMGGADTVNENDELQCLSFPCSIPNVFGRGFIEVEDHG--  485 (845)
Q Consensus       409 v~ag~~~~~~v~G~NL~~p~~rllc~~-~G~Yl~~e~~~~~~~g~~a~~~~~~~~~~~f~~~~P~~~G~~fIEVE~~g--  485 (845)
                      +..|+++.|.|...+....+..+.++- .|+-+..++.. .         .+....+.|   .|...|...|+|.-+|  
T Consensus        20 ~~vg~~~~f~Vd~~~ag~g~l~v~v~~P~g~~v~~~v~~-~---------~dg~y~v~f---~P~~~G~h~i~V~~~g~~   86 (103)
T d2dmca1          20 VKLGSAADFLLDISETDLSSLTASIKAPSGRDEPCLLKR-L---------PNNHIGISF---IPREVGEHLVSIKKNGNH   86 (103)
T ss_dssp             CCTTSCEEEECCCSCCCSTTBCCEEECTTSCBCCEEEEE-E---------TTTEEEEEE---CCCSCEEEEEECBBSSSB
T ss_pred             ccCCCcEEEEEECCCCCCCcEEEEEECCCCCEeccEEEE-C---------CCCEEEEEE---EeCCceeEEEEEEECCEE
Confidence            446999999998877766666666665 55555554432 1         222234444   4556799999999877  


Q ss_pred             cCCCceeeeecchh
Q 003138          486 LSSSFVPFIVAEQE  499 (845)
Q Consensus       486 ~~S~~~P~lvad~~  499 (845)
                      ..+++|.+-|.+++
T Consensus        87 i~gSPf~v~V~~~~  100 (103)
T d2dmca1          87 VANSPVSIMVVQSE  100 (103)
T ss_dssp             CTTCSEEEEECCSS
T ss_pred             CCCCCEEEEEccCC
Confidence            56888888887654


Done!