Query 003141
Match_columns 844
No_of_seqs 203 out of 591
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk1_A Protein STU2; STU2P, XM 92.3 0.31 1.1E-05 50.5 8.3 141 219-386 22-172 (249)
2 2qk2_A LP04448P; mini spindles 91.4 1.8 6.3E-05 43.5 12.8 124 192-349 76-206 (242)
3 1b3u_A Protein (protein phosph 90.5 11 0.00039 41.9 19.5 69 282-350 242-312 (588)
4 1ibr_B P95, importin beta-1 su 89.5 1 3.5E-05 48.8 9.5 134 193-351 109-249 (462)
5 2of3_A ZYG-9; multifunctional 88.5 3.7 0.00013 43.4 12.5 158 197-387 67-234 (266)
6 2qk2_A LP04448P; mini spindles 86.6 15 0.00051 36.7 15.5 143 213-387 56-203 (242)
7 2qk1_A Protein STU2; STU2P, XM 86.4 5.6 0.00019 40.9 12.3 133 213-349 60-221 (249)
8 2bpt_A Importin beta-1 subunit 85.0 2.5 8.6E-05 49.9 10.0 118 213-351 134-256 (861)
9 4ffb_C Protein STU2; tubulin f 85.0 9.8 0.00033 39.2 13.4 145 218-387 60-210 (278)
10 4db8_A Armadillo-repeat protei 82.3 3.6 0.00012 40.9 8.5 110 214-350 97-211 (252)
11 2vgl_A Adaptor protein complex 81.1 13 0.00045 43.4 13.9 158 180-373 20-200 (621)
12 4fdd_A Transportin-1; heat rep 80.7 3.4 0.00011 49.6 8.9 133 193-350 110-246 (852)
13 1b3u_A Protein (protein phosph 80.3 5.8 0.0002 44.3 10.1 132 214-349 403-549 (588)
14 1qgr_A Protein (importin beta 80.0 3.4 0.00012 48.8 8.6 115 214-351 129-249 (876)
15 1u6g_C TIP120 protein, CAND1; 79.1 8.9 0.0003 47.9 12.2 111 214-350 7-117 (1230)
16 1xqr_A HSPBP1 protein; armadil 78.6 14 0.00047 39.2 11.9 95 293-387 138-236 (296)
17 4hxt_A De novo protein OR329; 78.0 7.4 0.00025 38.2 9.0 163 198-387 24-197 (252)
18 4hxt_A De novo protein OR329; 76.6 5.9 0.0002 38.9 7.9 105 283-387 129-239 (252)
19 2vgl_B AP-2 complex subunit be 75.4 1.2E+02 0.0041 34.7 26.0 112 206-351 79-192 (591)
20 1w63_A Adapter-related protein 73.6 26 0.0009 40.6 13.5 87 293-387 363-449 (618)
21 2vgl_B AP-2 complex subunit be 72.3 7.2 0.00025 45.0 8.3 147 207-387 115-266 (591)
22 3b2a_A TON_1937, putative unch 72.0 88 0.003 32.8 15.2 155 196-387 20-177 (265)
23 4db6_A Armadillo repeat protei 69.3 13 0.00044 35.7 8.2 110 213-349 54-168 (210)
24 1wa5_B Importin alpha subunit; 61.2 17 0.00058 40.7 8.2 67 283-349 216-287 (530)
25 1xqr_A HSPBP1 protein; armadil 60.0 58 0.002 34.4 11.6 58 292-349 179-239 (296)
26 2vgl_A Adaptor protein complex 59.4 57 0.0019 38.0 12.5 145 196-371 92-239 (621)
27 1w63_A Adapter-related protein 57.6 25 0.00087 40.8 9.1 115 200-350 94-210 (618)
28 4ffb_C Protein STU2; tubulin f 57.1 15 0.00051 37.9 6.3 100 282-386 55-165 (278)
29 3ltm_A Alpha-REP4; protein eng 56.7 76 0.0026 30.4 11.1 86 284-387 114-201 (211)
30 3ltj_A Alpharep-4; protein eng 56.6 90 0.0031 29.6 11.6 44 295-346 122-165 (201)
31 4db6_A Armadillo repeat protei 56.3 64 0.0022 30.7 10.5 107 214-347 97-208 (210)
32 1ibr_B P95, importin beta-1 su 55.8 1.1E+02 0.0038 32.5 13.3 66 284-349 219-289 (462)
33 3grl_A General vesicular trans 55.7 54 0.0019 38.8 11.3 81 267-350 109-197 (651)
34 2jdq_A Importin alpha-1 subuni 55.0 25 0.00087 37.7 8.0 57 293-349 163-222 (450)
35 1u6g_C TIP120 protein, CAND1; 54.7 88 0.003 38.9 13.8 107 212-349 47-164 (1230)
36 1vsy_5 Proteasome activator BL 54.0 99 0.0034 38.4 13.8 138 199-349 202-366 (997)
37 4db8_A Armadillo-repeat protei 54.0 12 0.00042 37.0 4.9 106 280-387 14-123 (252)
38 1oyz_A Hypothetical protein YI 52.9 48 0.0017 33.4 9.3 98 214-346 55-155 (280)
39 4b8j_A Importin subunit alpha- 52.7 47 0.0016 36.9 10.0 67 283-349 203-274 (528)
40 1wa5_B Importin alpha subunit; 52.7 23 0.00078 39.7 7.4 81 292-372 185-269 (530)
41 3b2a_A TON_1937, putative unch 52.6 38 0.0013 35.5 8.2 107 276-384 27-139 (265)
42 2jdq_A Importin alpha-1 subuni 49.9 38 0.0013 36.3 8.4 68 283-350 108-181 (450)
43 3now_A UNC-45 protein, SD10334 48.7 92 0.0032 37.8 12.1 153 194-348 512-694 (810)
44 3ltm_A Alpha-REP4; protein eng 46.7 92 0.0032 29.7 9.9 27 214-240 20-46 (211)
45 1jdh_A Beta-catenin; beta-cate 46.3 85 0.0029 34.4 10.7 141 205-372 9-155 (529)
46 3ltj_A Alpharep-4; protein eng 45.0 1.1E+02 0.0038 28.9 10.1 56 283-346 77-134 (201)
47 4fdd_A Transportin-1; heat rep 44.2 4.6E+02 0.016 30.9 26.3 54 295-349 336-389 (852)
48 1qgr_A Protein (importin beta 42.8 1.9E+02 0.0064 33.9 13.5 67 282-349 408-480 (876)
49 4b8j_A Importin subunit alpha- 42.2 1E+02 0.0034 34.2 10.5 90 283-372 161-256 (528)
50 2bpt_A Importin beta-1 subunit 41.4 2.1E+02 0.0071 33.4 13.5 66 282-347 134-209 (861)
51 1oyz_A Hypothetical protein YI 39.8 1.5E+02 0.0052 29.6 10.6 127 214-385 24-153 (280)
52 2of3_A ZYG-9; multifunctional 37.5 65 0.0022 33.8 7.4 71 311-387 122-194 (266)
53 1upk_A MO25 protein; transfera 36.9 4.4E+02 0.015 28.6 14.0 86 275-365 202-295 (341)
54 2z6g_A B-catenin; FULL-length, 36.4 48 0.0016 39.6 7.1 149 211-384 148-300 (780)
55 2z6h_A Catenin beta-1, beta-ca 36.4 40 0.0014 38.9 6.2 159 205-387 6-167 (644)
56 3tj1_A RNA polymerase I-specif 33.7 6.6E+02 0.022 29.7 19.5 123 460-633 348-472 (649)
57 3ldz_A STAM-1, signal transduc 32.6 1.4E+02 0.0047 28.1 8.2 56 314-376 84-139 (140)
58 3u0r_A Apoptosis inhibitor 5; 27.4 2.8E+02 0.0094 31.8 10.7 147 202-387 54-200 (507)
59 1te4_A Conserved protein MTH18 27.1 2E+02 0.0067 25.5 8.1 87 215-345 44-130 (131)
60 3ldz_A STAM-1, signal transduc 26.9 76 0.0026 29.9 5.3 49 300-350 25-73 (140)
61 3tjz_B Coatomer subunit gamma; 26.8 63 0.0022 35.3 5.3 121 214-373 69-189 (355)
62 3opb_A SWI5-dependent HO expre 26.6 9.1E+02 0.031 29.1 16.8 158 192-350 472-685 (778)
63 3tpo_A Importin subunit alpha- 24.9 3.5E+02 0.012 30.1 11.3 58 294-351 391-452 (529)
64 1juq_A ADP-ribosylation factor 22.3 1.8E+02 0.0062 28.3 7.2 49 299-349 32-80 (171)
65 3tpo_A Importin subunit alpha- 22.1 1.2E+02 0.004 34.1 6.6 54 297-350 226-282 (529)
66 1x5b_A Signal transducing adap 20.6 1.5E+02 0.005 28.7 6.1 82 292-378 64-152 (163)
67 1mhq_A ADP-ribosylation factor 20.3 1.9E+02 0.0064 27.5 6.6 49 300-350 21-69 (148)
68 3ibv_A Exportin-T; karyopherin 20.1 1.2E+03 0.043 28.3 16.1 137 206-350 121-262 (980)
No 1
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.27 E-value=0.31 Score=50.51 Aligned_cols=141 Identities=10% Similarity=0.105 Sum_probs=90.0
Q ss_pred HHHhhccChhhHHHHHHHHHH-HHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcc-
Q 003141 219 LQIARDDNPSISKLGFLSLLA-VFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASE-KQPV- 295 (844)
Q Consensus 219 ~~m~~~k~~~vrkLAilSL~~-VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~-k~~~- 295 (844)
..++.+++-..|+-|+.+|.. +... .| +|-+.. ..|..+++.|.... +|++
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~-~~--~i~~~~-----------------------~~~~~~~~~L~~~l~~D~n~ 75 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQ-TK--KLKSTS-----------------------QNYSNLLGIYGHIIQKDANI 75 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGG-CC--CBCCTT-----------------------CCCHHHHHHHHHHHHHCSCH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhc-CC--ccccCc-----------------------ccHHHHHHHHHHHhccCCCH
Confidence 445567777888888887777 6543 22 222100 01334444444443 4553
Q ss_pred -hHHHHHHHHHHHhhcC--CCCc--hHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCCccH-H-HHHHHHHHh
Q 003141 296 -FHQVVVRCICNLLDAV--PHFN--CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVAT-V-EAVRLIANH 368 (844)
Q Consensus 296 -l~~~Avkclc~LL~~~--PhFN--f~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~~s-l-eiVr~I~~~ 368 (844)
.+..|++|+..|.... |+|+ |...+|..|+.+++++...|+..+..++..++..-.. ....+ + .++..|...
T Consensus 76 ~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~ 154 (249)
T 2qk1_A 76 QAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEH 154 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHH
Confidence 5788899998888765 6886 9999999999999999999999889999999886310 00000 2 355566666
Q ss_pred hhhcCCCCCHHHHHHhhc
Q 003141 369 VKVKNCQLHPDFVEVFMS 386 (844)
Q Consensus 369 vK~k~~~v~p~vl~~fL~ 386 (844)
++.++.++...++.++-.
T Consensus 155 l~~k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 155 MKHKTPQIRMECTQLFNA 172 (249)
T ss_dssp TTCSSHHHHHHHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHH
Confidence 666665555555555443
No 2
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.39 E-value=1.8 Score=43.55 Aligned_cols=124 Identities=17% Similarity=0.211 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHhCH-HHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHH
Q 003141 192 SKKCKLAELGMALLADP-ESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMR 270 (844)
Q Consensus 192 ~~kdkIAaL~~~I~edP-e~ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr 270 (844)
.+-.-++.|+..+...= .+--.-+..|+..+.+++..||.-|..+|.+++...
T Consensus 76 ~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-------------------------- 129 (242)
T 2qk2_A 76 MAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-------------------------- 129 (242)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--------------------------
Confidence 44455666665554321 122446778888888888899998998888886621
Q ss_pred HHHHHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHhhcC-CCC---chHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 003141 271 FYESTLLSAYKAYLQKLIAS--EKQPVFHQVVVRCICNLLDAV-PHF---NCCEILLEVVVRNLGSQDVVVRKLCCATIK 344 (844)
Q Consensus 271 ~fE~~Ll~~Y~~yLq~Le~l--~k~~~l~~~Avkclc~LL~~~-PhF---Nf~~nLL~~lV~kLg~~~~~Va~~c~~al~ 344 (844)
.+..++..|... .+.+..+..++.++..++..+ |+. .+-..|+..++..|+|++..|+..+..+|.
T Consensus 130 --------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 130 --------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALG 201 (242)
T ss_dssp --------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 012233333332 234567899999999988776 552 345689999999999999999999999998
Q ss_pred HHhhh
Q 003141 345 SLFTN 349 (844)
Q Consensus 345 ~Lf~~ 349 (844)
.+...
T Consensus 202 ~l~~~ 206 (242)
T 2qk2_A 202 TLIKL 206 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=90.54 E-value=11 Score=41.88 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCc--chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhc
Q 003141 282 AYLQKLIASEKQP--VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 350 (844)
Q Consensus 282 ~yLq~Le~l~k~~--~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D 350 (844)
.++..+..+..++ ..+..|+.++..+....+.-.+...++..++..+.|++..|+..|+.+|..+...-
T Consensus 242 ~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Confidence 3455555555554 46888889988888765433456788999999999999999999999999988753
No 4
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=89.55 E-value=1 Score=48.79 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhCHHHhH-HHHHHHHHHhhcc--ChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHH
Q 003141 193 KKCKLAELGMALLADPESNI-KSLKEMLQIARDD--NPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKM 269 (844)
Q Consensus 193 ~kdkIAaL~~~I~edPe~ni-~~Lk~L~~m~~~k--~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~l 269 (844)
+..-|+.++... -|...+ ..+..|+..+.+. +..++..|+..|..++.++.|.. +. ..
T Consensus 109 ~~~~i~~ia~~~--~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~----~~------~~------- 169 (462)
T 1ibr_B 109 ASQCVAGIACAE--IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ----LQ------DK------- 169 (462)
T ss_dssp HHHHHHHHHHHH--GGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG----TG------GG-------
T ss_pred HHHHHHHHHHHh--ccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchh----hH------hH-------
Confidence 334455554433 243222 3677788888877 88899999999999988864321 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhcCC----CCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 003141 270 RFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVP----HFNCCEILLEVVVRNLGSQDVVVRKLCCATIKS 345 (844)
Q Consensus 270 r~fE~~Ll~~Y~~yLq~Le~l~k~~~l~~~Avkclc~LL~~~P----hFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~ 345 (844)
+ ..++. .+++.|..-..++.++..|++|++.++.-.. ...+++-++..+...+.+.+..++..+|.+|..
T Consensus 170 --~-~~ll~---~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~ 243 (462)
T 1ibr_B 170 --S-NEILT---AIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVK 243 (462)
T ss_dssp --H-HHHHH---HHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred --H-HHHHH---HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 0 11222 2233322111134578889999999764211 112334568888888888999999999999999
Q ss_pred Hhhhcc
Q 003141 346 LFTNEG 351 (844)
Q Consensus 346 Lf~~D~ 351 (844)
+....+
T Consensus 244 l~~~~~ 249 (462)
T 1ibr_B 244 IMSLYY 249 (462)
T ss_dssp HHHHCG
T ss_pred HHHHHH
Confidence 887653
No 5
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=88.49 E-value=3.7 Score=43.40 Aligned_cols=158 Identities=17% Similarity=0.210 Sum_probs=93.2
Q ss_pred HHHHHHHHHhCHHHhHHHHHHHHHHhh----ccChhhHHHHHHHHHHHHhhhc-CCCCCCCCchhhhhhhhhHHHHHHHH
Q 003141 197 LAELGMALLADPESNIKSLKEMLQIAR----DDNPSISKLGFLSLLAVFKDII-PGYRIRLPTEKELEMKVSKEVKKMRF 271 (844)
Q Consensus 197 IAaL~~~I~edPe~ni~~Lk~L~~m~~----~k~~~vrkLAilSL~~VFkDIl-P~YrIR~lte~E~~~kvsKev~~lr~ 271 (844)
+..|...+-++|+.-+..++-|+..|. +++.++...++..|..+|.=+. =+|++. +.|.
T Consensus 67 le~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~---~~ea------------- 130 (266)
T 2of3_A 67 LDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS---QEEV------------- 130 (266)
T ss_dssp HHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC---HHHH-------------
T ss_pred HHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch---HHHH-------------
Confidence 344555667788888888888887765 6777777777766666654332 245543 2211
Q ss_pred HHHHHHHHHHHHHHH-HHHhcC-CcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhh
Q 003141 272 YESTLLSAYKAYLQK-LIASEK-QPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 349 (844)
Q Consensus 272 fE~~Ll~~Y~~yLq~-Le~l~k-~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~ 349 (844)
. .||=. ++++.. ...++..+-.++-.|..-.| -+.++..+++.+.+++.+++.-|+..+..++..
T Consensus 131 ---~------~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~----~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 131 ---S------AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG----PLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp ---H------HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ---H------HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 1 12222 333321 11344444433322222122 124777777777778888888888888888887
Q ss_pred ccCCCCccHHHHH---HHHHHhhhhcCCCCCHHHHHHhhcc
Q 003141 350 EGKHGGVATVEAV---RLIANHVKVKNCQLHPDFVEVFMSL 387 (844)
Q Consensus 350 D~~~~G~~sleiV---r~I~~~vK~k~~~v~p~vl~~fL~L 387 (844)
++. . ....+ ..|++++-.++-+|+...++|+..+
T Consensus 198 ~G~-~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 198 AGI-S---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HCS-G---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred cCC-C---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 642 1 22244 7777777777777777777776654
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=86.63 E-value=15 Score=36.72 Aligned_cols=143 Identities=12% Similarity=0.107 Sum_probs=96.5
Q ss_pred HHHHHHHHHhh-ccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003141 213 KSLKEMLQIAR-DDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASE 291 (844)
Q Consensus 213 ~~Lk~L~~m~~-~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~ 291 (844)
.-+..|..... +.+..++..|+..+..+...+- ..|+ .+...++..|....
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~------------------------~~~~----~~~~~ilp~ll~~l 107 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA------------------------KRFS----NYASACVPSLLEKF 107 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG------------------------GGGH----HHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh------------------------hhHH----HHHHHHHHHHHHHH
Confidence 34556666664 7888999999888888764221 1122 22334555555554
Q ss_pred CCc--chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCC-CCccHH-HHHHHHHH
Q 003141 292 KQP--VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKH-GGVATV-EAVRLIAN 367 (844)
Q Consensus 292 k~~--~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~-~G~~sl-eiVr~I~~ 367 (844)
+++ ..+..|..++..+....+ + ..++..+...|.+++..|+..|+..|..++...+.. .+...+ .++-.+..
T Consensus 108 ~d~~~~vr~~a~~aL~~~~~~~~---~-~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~ 183 (242)
T 2qk2_A 108 KEKKPNVVTALREAIDAIYASTS---L-EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVK 183 (242)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTSC---H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHcCC---H-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Confidence 444 578888888888877643 3 578999999999999999999999999988764211 111111 36666777
Q ss_pred hhhhcCCCCCHHHHHHhhcc
Q 003141 368 HVKVKNCQLHPDFVEVFMSL 387 (844)
Q Consensus 368 ~vK~k~~~v~p~vl~~fL~L 387 (844)
.+...+..|+.....++-.+
T Consensus 184 ~l~D~~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 184 TLNEPDPTVRDSSAEALGTL 203 (242)
T ss_dssp HHTSSCHHHHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHH
Confidence 77777777777777776554
No 7
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=86.38 E-value=5.6 Score=40.92 Aligned_cols=133 Identities=14% Similarity=0.174 Sum_probs=84.4
Q ss_pred HHHHHHHHHh-hccChhhHHHHHHHHHHHHhhhc-CCCCCCCCchh------hhhhhhh-HHHHHHHHHHHHHHHHHHH-
Q 003141 213 KSLKEMLQIA-RDDNPSISKLGFLSLLAVFKDII-PGYRIRLPTEK------ELEMKVS-KEVKKMRFYESTLLSAYKA- 282 (844)
Q Consensus 213 ~~Lk~L~~m~-~~k~~~vrkLAilSL~~VFkDIl-P~YrIR~lte~------E~~~kvs-Kev~~lr~fE~~Ll~~Y~~- 282 (844)
..++.|.... .+.+..++..|+..+..+-..+- |++.- +.... +. .+-+ +.|. ..-...|...+..
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~-~y~~~llp~ll~~-l~dkk~~V~--~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK-DYVSLVFTPLLDR-TKEKKPSVI--EAIRKALLTICKYY 135 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH-HHHHHHHHHHHHG-GGCCCHHHH--HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH-HHHHHHHHHHHHH-HcCCCHHHH--HHHHHHHHHHHHHc
Confidence 3466676666 67888899999999888877675 55430 11100 00 0001 1221 1222233333332
Q ss_pred -----------HHHHHHH-hc-CCcchHHHHHHHHHHHhhcCCC----C-chH-HHHHHHHHHhhCCCcHHHHHHHHHHH
Q 003141 283 -----------YLQKLIA-SE-KQPVFHQVVVRCICNLLDAVPH----F-NCC-EILLEVVVRNLGSQDVVVRKLCCATI 343 (844)
Q Consensus 283 -----------yLq~Le~-l~-k~~~l~~~Avkclc~LL~~~Ph----F-Nf~-~nLL~~lV~kLg~~~~~Va~~c~~al 343 (844)
.+..|.. +. +.+..+..++.++..++.+.+. | .+- ..|+..+++.|+|.+..|+..|++++
T Consensus 136 ~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 136 DPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp CTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2222222 22 3567899999999999998875 2 233 68999999999999999999999999
Q ss_pred HHHhhh
Q 003141 344 KSLFTN 349 (844)
Q Consensus 344 ~~Lf~~ 349 (844)
..+.+.
T Consensus 216 ~~i~~~ 221 (249)
T 2qk1_A 216 AILIKI 221 (249)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=84.99 E-value=2.5 Score=49.90 Aligned_cols=118 Identities=13% Similarity=0.163 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhcc-ChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003141 213 KSLKEMLQIARDD-NPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASE 291 (844)
Q Consensus 213 ~~Lk~L~~m~~~k-~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~ 291 (844)
..+..|+..+... +..++..|+..+..++.++-|..+ .+. .+-..|+. .+++.|..-.
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~--~~~----------------~~~~~ll~---~l~~~l~~~~ 192 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ--ALV----------------SSSNNILI---AIVQGAQSTE 192 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS--TTG----------------GGHHHHHH---HHHHHHSTTC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh--HHH----------------HHHHHHHH---HHHHhhcCCC
Confidence 3677888888877 888999999999999887655432 010 00011111 2222222111
Q ss_pred CCcchHHHHHHHHHHHhhcCC-CC---chHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhcc
Q 003141 292 KQPVFHQVVVRCICNLLDAVP-HF---NCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEG 351 (844)
Q Consensus 292 k~~~l~~~Avkclc~LL~~~P-hF---Nf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~ 351 (844)
.++.++..|++|++.++.... ++ .++..++..+...+.+.+..++..++.+|..+....+
T Consensus 193 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~ 256 (861)
T 2bpt_A 193 TSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY 256 (861)
T ss_dssp CCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 234578899999999864321 11 2345688888888899999999999999998887653
No 9
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=84.97 E-value=9.8 Score=39.24 Aligned_cols=145 Identities=8% Similarity=0.080 Sum_probs=87.9
Q ss_pred HHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhc--CCc
Q 003141 218 MLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQK-LIASE--KQP 294 (844)
Q Consensus 218 L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~-Le~l~--k~~ 294 (844)
+..++.+.|..+...|+..+..++.-..+.+..+.. .......++.. ++++- ..+
T Consensus 60 lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~----------------------~~~~~~~~l~~lveK~l~~~k~ 117 (278)
T 4ffb_C 60 FAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH----------------------NITLISTWTPLLVEKGLTSSRA 117 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH----------------------HHHHHHHHHHHHHHHTSSCCCH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch----------------------hHHHHHHHHHHHHHHHhcCccH
Confidence 345556778778777777666654332222211110 01122233433 34532 334
Q ss_pred chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCCccH--H-HHHHHHHHhhhh
Q 003141 295 VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVAT--V-EAVRLIANHVKV 371 (844)
Q Consensus 295 ~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~~s--l-eiVr~I~~~vK~ 371 (844)
..+..|+.|+..+...... . ..++..++..+++++++|+.-|+..|..++.+-+....... + .++..+...+-.
T Consensus 118 ~~~~~a~~~l~~~~~~~~~-~--~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d 194 (278)
T 4ffb_C 118 TTKTQSMSCILSLCGLDTS-I--TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGH 194 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSS-S--HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCc-H--HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhC
Confidence 5778889998888754322 2 36789999999999999999999999999998642111111 1 144456666667
Q ss_pred cCCCCCHHHHHHhhcc
Q 003141 372 KNCQLHPDFVEVFMSL 387 (844)
Q Consensus 372 k~~~v~p~vl~~fL~L 387 (844)
++..|+...++++..+
T Consensus 195 ~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 195 GDRNVRSQTMNLIVEI 210 (278)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 7778888877776554
No 10
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=82.29 E-value=3.6 Score=40.90 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=68.6
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 003141 214 SLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEK- 292 (844)
Q Consensus 214 ~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~k- 292 (844)
.+..|+.+....+..++..|+.+|..+-.+ .. .....-.+. ..+..|..+-.
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-----------~~---------~~~~~~~~~-------~~i~~L~~lL~~ 149 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIASG-----------GN---------EQIQAVIDA-------GALPALVQLLSS 149 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-----------CH---------HHHHHHHHT-------THHHHHHHGGGC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcC-----------Cc---------hHHHHHHHC-------CCHHHHHHHHhC
Confidence 456666666666666666666666655110 00 000111111 23455555443
Q ss_pred -CcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhc
Q 003141 293 -QPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 350 (844)
Q Consensus 293 -~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D 350 (844)
++..+..|+.+++.|....+..- ....++..++..|.+++..++..|+.+|..+...+
T Consensus 150 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 150 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 211 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC
Confidence 34578888999999886554321 11356889999999999999999999999998643
No 11
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=81.11 E-value=13 Score=43.40 Aligned_cols=158 Identities=15% Similarity=0.190 Sum_probs=95.2
Q ss_pred hhhcCCHHHHHHHHHHHHHHHHHHHHh----CHHHhHHHHHHHHHHhh-----------------ccChhhHHHHHHHHH
Q 003141 180 VKEDLTAEELFESKKCKLAELGMALLA----DPESNIKSLKEMLQIAR-----------------DDNPSISKLGFLSLL 238 (844)
Q Consensus 180 ~~~~l~~~e~~~~~kdkIAaL~~~I~e----dPe~ni~~Lk~L~~m~~-----------------~k~~~vrkLAilSL~ 238 (844)
+...-|.++.....+.+++.+=..+.+ ||......+..|+.+.. .++..+++++.+.+.
T Consensus 20 ir~~~~~~~e~~~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~ 99 (621)
T 2vgl_A 20 IRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFIS 99 (621)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 333334444555556666666666663 56666666666665543 345567777777766
Q ss_pred HHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhhcCCCCchHH
Q 003141 239 AVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCE 318 (844)
Q Consensus 239 ~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~k~~~l~~~Avkclc~LL~~~PhFNf~~ 318 (844)
.++.. . .|+. .-.=..+.+.|. ..++..+..|+++||.+-. |+ +..
T Consensus 100 ~~~~~-----------~--------~e~~---------~L~iN~l~kDl~--~~n~~ir~lALr~L~~i~~--~e--~~~ 145 (621)
T 2vgl_A 100 VLVNS-----------N--------SELI---------RLINNAIKNDLA--SRNPTFMGLALHCIANVGS--RE--MAE 145 (621)
T ss_dssp HSCCC-----------C--------HHHH---------HHHHHHHHHHHH--SCCHHHHHHHHHHHHHHCC--HH--HHH
T ss_pred HHccC-----------C--------cHHH---------HHHHHHHHHhcC--CCCHHHHHHHHHHhhccCC--HH--HHH
Confidence 66420 0 1111 111112222222 3345678999999999943 43 667
Q ss_pred HHHHHHHHhh--CCCcHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHhhhhcC
Q 003141 319 ILLEVVVRNL--GSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKN 373 (844)
Q Consensus 319 nLL~~lV~kL--g~~~~~Va~~c~~al~~Lf~~D~~~~G~~sleiVr~I~~~vK~k~ 373 (844)
.|+..|...| +|+++.|+..++-++..+++.++..-.. -..+..+.+++...+
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d 200 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQH 200 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCC
Confidence 8999999999 9999999999999999999987532210 024555555664444
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=80.73 E-value=3.4 Score=49.56 Aligned_cols=133 Identities=13% Similarity=0.183 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHH
Q 003141 193 KKCKLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFY 272 (844)
Q Consensus 193 ~kdkIAaL~~~I~edPe~ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~f 272 (844)
+-.-|+.++.. +.|..--..+..|+.++...+..++..|+..|..++.++-+...-..+. ..
T Consensus 110 ~a~~i~~ia~~--~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~------~~---------- 171 (852)
T 4fdd_A 110 VGILITTIASK--GELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD------RP---------- 171 (852)
T ss_dssp HHHHHHHHHHH--TTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSS------SC----------
T ss_pred HHHHHHHHHHh--cCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhc------ch----------
Confidence 33444444433 1333333467888888888888999999999999988863310000000 00
Q ss_pred HHHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhh
Q 003141 273 ESTLLSAYKAYLQKLIASEK--QPVFHQVVVRCICNLLDAVPH--FNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFT 348 (844)
Q Consensus 273 E~~Ll~~Y~~yLq~Le~l~k--~~~l~~~Avkclc~LL~~~Ph--FNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~ 348 (844)
+ ...+..|..+-. ++..+..|++|++.++...+. ...-..++..++..+++++..|+..+|.+|..+..
T Consensus 172 ---~----~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~ 244 (852)
T 4fdd_A 172 ---L----NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLE 244 (852)
T ss_dssp ---H----HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred ---H----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 0 111222222222 345788899999888765442 22334788889999999999999999999998887
Q ss_pred hc
Q 003141 349 NE 350 (844)
Q Consensus 349 ~D 350 (844)
..
T Consensus 245 ~~ 246 (852)
T 4fdd_A 245 VR 246 (852)
T ss_dssp HC
T ss_pred hC
Confidence 54
No 13
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=80.28 E-value=5.8 Score=44.32 Aligned_cols=132 Identities=12% Similarity=0.141 Sum_probs=82.3
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCC---CC-----CCCchhhhhhhhhHHH-HHH----HHHHHHHHHHH
Q 003141 214 SLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGY---RI-----RLPTEKELEMKVSKEV-KKM----RFYESTLLSAY 280 (844)
Q Consensus 214 ~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~Y---rI-----R~lte~E~~~kvsKev-~~l----r~fE~~Ll~~Y 280 (844)
.+..|..++.+.+..+|..++..+..+...+=+.+ .| +.+.+... .|.... ..+ ..|... ..+
T Consensus 403 ~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~--~Vr~~a~~~l~~l~~~~~~~--~~~ 478 (588)
T 1b3u_A 403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY--AIREAATSNLKKLVEKFGKE--WAH 478 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSH--HHHHHHHHHHHHHHHHHCHH--HHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHHhCch--hHH
Confidence 57778888888888888888777666543221110 00 11122111 111111 111 112111 023
Q ss_pred HHHHHHHHHhcCCc--chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhh
Q 003141 281 KAYLQKLIASEKQP--VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 349 (844)
Q Consensus 281 ~~yLq~Le~l~k~~--~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~ 349 (844)
..++..|..+..++ ..+..|+.|+..|....+...|...++..+++.+.|++..|+..++.++..+...
T Consensus 479 ~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 45666666666554 4678889999888766544446778999999999999999999999999999875
No 14
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=80.04 E-value=3.4 Score=48.83 Aligned_cols=115 Identities=12% Similarity=0.139 Sum_probs=73.8
Q ss_pred HHHHHHHHhhcc--ChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003141 214 SLKEMLQIARDD--NPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASE 291 (844)
Q Consensus 214 ~Lk~L~~m~~~k--~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~ 291 (844)
.+..|+.++... +..++..|+..+..++.++-|. . |+..+-.....+++.|..-.
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~------------------~-----~~~~~~~ll~~l~~~l~~~~ 185 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE------------------Q-----LQDKSNEILTAIIQGMRKEE 185 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH------------------H-----HGGGHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh------------------h-----HHhHHHHHHHHHHHhhcCCC
Confidence 567777777777 7888899998888888765321 0 11111111112222221111
Q ss_pred CCcchHHHHHHHHHHHhhcCC-CC---chHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhcc
Q 003141 292 KQPVFHQVVVRCICNLLDAVP-HF---NCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEG 351 (844)
Q Consensus 292 k~~~l~~~Avkclc~LL~~~P-hF---Nf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~ 351 (844)
.++..+..|++|++.++...+ ++ .+++.++..+...+.+.+..++..|+.+|..++...+
T Consensus 186 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 186 PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp SCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH
Confidence 123568889999999886422 22 1234578888888889999999999999999988653
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=79.07 E-value=8.9 Score=47.91 Aligned_cols=111 Identities=14% Similarity=0.283 Sum_probs=76.4
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003141 214 SLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQ 293 (844)
Q Consensus 214 ~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~k~ 293 (844)
.|..|+.-+.+.|+.+|.+|+..|...++. |...+ .+. ....++. ..++.|. ..+
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~--~~~~~---~~~---------------~~~~il~---~Ll~~L~--d~~ 61 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQK--DSIKL---DDD---------------SERKVVK---MILKLLE--DKN 61 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSS--SCCSC---CTT---------------HHHHHHH---HHHHHTT--CSS
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcc--cccCC---Chh---------------HHHHHHH---HHHHHhc--CCC
Confidence 466777777888999999999888776543 11111 110 0011111 1111121 344
Q ss_pred cchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhc
Q 003141 294 PVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 350 (844)
Q Consensus 294 ~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D 350 (844)
+..+..|+.|++.|....+. .+...|+..++..|++++..|+..|+.+|..+...-
T Consensus 62 ~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l 117 (1230)
T 1u6g_C 62 GEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGEL 117 (1230)
T ss_dssp HHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC
Confidence 56789999999999988776 667889999999999999999999999998887654
No 16
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=78.65 E-value=14 Score=39.22 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=68.8
Q ss_pred CcchHHHHHHHHHHHhhcCCCC--chH-HHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCC-CccHHHHHHHHHHh
Q 003141 293 QPVFHQVVVRCICNLLDAVPHF--NCC-EILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHG-GVATVEAVRLIANH 368 (844)
Q Consensus 293 ~~~l~~~Avkclc~LL~~~PhF--Nf~-~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~-G~~sleiVr~I~~~ 368 (844)
++.++..|+.+++.|....|.. -|. .+.+..|+..|.+++..+...+|.+|..|...++... -.+...+|..+..+
T Consensus 138 ~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~L 217 (296)
T 1xqr_A 138 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217 (296)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHH
Confidence 3467888999999988776541 122 3688999999999999999999999999987642111 01112366777788
Q ss_pred hhhcCCCCCHHHHHHhhcc
Q 003141 369 VKVKNCQLHPDFVEVFMSL 387 (844)
Q Consensus 369 vK~k~~~v~p~vl~~fL~L 387 (844)
+...+..|...++.++.+|
T Consensus 218 L~~~d~~v~~~al~aL~~l 236 (296)
T 1xqr_A 218 VRTEHSPFHEHVLGALCSL 236 (296)
T ss_dssp HTSCCSTHHHHHHHHHHHH
T ss_pred HcCCChhHHHHHHHHHHHH
Confidence 8777777777777777666
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=77.99 E-value=7.4 Score=38.15 Aligned_cols=163 Identities=10% Similarity=0.143 Sum_probs=92.6
Q ss_pred HHHHHHHHhCHHHh-----HHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHH
Q 003141 198 AELGMALLADPESN-----IKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFY 272 (844)
Q Consensus 198 AaL~~~I~edPe~n-----i~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~f 272 (844)
.+|+.....+|+.. -+.+..|+.++...+..++..|+..|..+-.+ .+. . ... -.
T Consensus 24 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----------~~~-~----~~~-----~~ 83 (252)
T 4hxt_A 24 RDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG----------PDE-A----IKA-----IV 83 (252)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----------CHH-H----HHH-----HH
T ss_pred HHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----------ChH-H----HHH-----HH
Confidence 34444555555322 13577788888888888888888777766221 010 0 001 11
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 003141 273 ESTLLSAYKAYLQKLIASE--KQPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLF 347 (844)
Q Consensus 273 E~~Ll~~Y~~yLq~Le~l~--k~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf 347 (844)
+.+ .+..|..+- .++.++..|+.+++.|....|+.- .....+..++..|.+++..++..|+.+|..+.
T Consensus 84 ~~~-------~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 84 DAG-------GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HTT-------HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HCC-------CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 122 233343333 334578888888888876544311 11257889999999999999999999999997
Q ss_pred hhccCCC-CccHHHHHHHHHHhhhhcCCCCCHHHHHHhhcc
Q 003141 348 TNEGKHG-GVATVEAVRLIANHVKVKNCQLHPDFVEVFMSL 387 (844)
Q Consensus 348 ~~D~~~~-G~~sleiVr~I~~~vK~k~~~v~p~vl~~fL~L 387 (844)
...+... ......++..+.+++...+..+...++.++-.+
T Consensus 157 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 157 SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 7432100 001112555566666544433333444444444
No 18
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=76.59 E-value=5.9 Score=38.85 Aligned_cols=105 Identities=11% Similarity=0.133 Sum_probs=63.9
Q ss_pred HHHHHHHhcC--CcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCC-c
Q 003141 283 YLQKLIASEK--QPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGG-V 356 (844)
Q Consensus 283 yLq~Le~l~k--~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G-~ 356 (844)
.+..|..+-. ++.++..|+.+++.|....|..- ....++..++..|.+++..++..|+.+|..+...++.... .
T Consensus 129 ~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 208 (252)
T 4hxt_A 129 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAI 208 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555443 34578889999999877544310 1124889999999999999999999999999874321000 0
Q ss_pred cHHHHHHHHHHhhhhcCCCCCHHHHHHhhcc
Q 003141 357 ATVEAVRLIANHVKVKNCQLHPDFVEVFMSL 387 (844)
Q Consensus 357 ~sleiVr~I~~~vK~k~~~v~p~vl~~fL~L 387 (844)
....++..+.+++...+..+...++.++-.|
T Consensus 209 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 209 VDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 0111455556666544444444444444444
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=75.43 E-value=1.2e+02 Score=34.70 Aligned_cols=112 Identities=14% Similarity=0.248 Sum_probs=75.4
Q ss_pred hCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003141 206 ADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQ 285 (844)
Q Consensus 206 edPe~ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq 285 (844)
++|+.-+-....|..-+.+.|+.+|.+|+.+|..+- +. + +... | +.
T Consensus 79 ~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~------------~~-~----~~~~----------l-------~~ 124 (591)
T 2vgl_B 79 SQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR------------VD-K----ITEY----------L-------CE 124 (591)
T ss_dssp HSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC------------SG-G----GHHH----------H-------HH
T ss_pred cCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC------------hH-H----HHHH----------H-------HH
Confidence 356665555566666666667777777766665441 10 0 1111 1 12
Q ss_pred HHHHhc--CCcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhcc
Q 003141 286 KLIASE--KQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEG 351 (844)
Q Consensus 286 ~Le~l~--k~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~ 351 (844)
.+.++. .+|..+..|+.|+..+....|+.=-...++..+...|+|++..|..-|..+|.++-..++
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 333333 345789999999999999888743334688999999999999999999999999887764
No 20
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=73.58 E-value=26 Score=40.63 Aligned_cols=87 Identities=11% Similarity=0.065 Sum_probs=60.2
Q ss_pred CcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHhhhhc
Q 003141 293 QPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVK 372 (844)
Q Consensus 293 ~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~~sleiVr~I~~~vK~k 372 (844)
++.++..|+.+++.|.. +-|. ..|+.-+...+.+.+..++..++.+|..+-... .+.. -..|..+.++++..
T Consensus 363 d~~Ir~~alelL~~l~~---~~nv-~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~---~~~~-~~~v~~ll~lL~~~ 434 (618)
T 1w63_A 363 DVSIKRRAMELSFALVN---GNNI-RGMMKELLYFLDSCEPEFKADCASGIFLAAEKY---APSK-RWHIDTIMRVLTTA 434 (618)
T ss_dssp CHHHHHHHHHHHHHHCC---SSST-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSS---CCCH-HHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHcc---cccH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh---CccH-HHHHHHHHHHHHhc
Confidence 34678888888888865 3444 567888888888888888888888888887653 2333 23455565777666
Q ss_pred CCCCCHHHHHHhhcc
Q 003141 373 NCQLHPDFVEVFMSL 387 (844)
Q Consensus 373 ~~~v~p~vl~~fL~L 387 (844)
+..+..+++.++..+
T Consensus 435 ~~~v~~~~~~~l~~i 449 (618)
T 1w63_A 435 GSYVRDDAVPNLIQL 449 (618)
T ss_dssp GGGSCSSHHHHHHHH
T ss_pred cchhHHHHHHHHHHH
Confidence 656666666665554
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=72.29 E-value=7.2 Score=44.97 Aligned_cols=147 Identities=10% Similarity=0.127 Sum_probs=87.1
Q ss_pred CHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003141 207 DPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQK 286 (844)
Q Consensus 207 dPe~ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~ 286 (844)
+|+-.-.-+..|..++.+.++.||+-|..++..+|. .-|+. +. ...++..
T Consensus 115 ~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~-~~p~~-------------~~----------------~~~~~~~ 164 (591)
T 2vgl_B 115 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD-INAQM-------------VE----------------DQGFLDS 164 (591)
T ss_dssp SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH-SSCCC-------------HH----------------HHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh-hChhh-------------cc----------------cccHHHH
Confidence 444333334556677778889999999999999976 22320 00 0145666
Q ss_pred HHHhcCC--cchHHHHHHHHHHHhhcCC---CCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCCccHHHH
Q 003141 287 LIASEKQ--PVFHQVVVRCICNLLDAVP---HFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEA 361 (844)
Q Consensus 287 Le~l~k~--~~l~~~Avkclc~LL~~~P---hFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~~slei 361 (844)
|..+-.+ +.....|+.+++++-...| .+......+..+++.+.+.++-+.-.++.++..+-..+ ....-.+
T Consensus 165 l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~----~~~~~~~ 240 (591)
T 2vgl_B 165 LRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD----DREAQSI 240 (591)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS----HHHHHHH
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC----hHHHHHH
Confidence 6665444 4678889999999988887 45655566777777777666655544555544333211 1111234
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHhhcc
Q 003141 362 VRLIANHVKVKNCQLHPDFVEVFMSL 387 (844)
Q Consensus 362 Vr~I~~~vK~k~~~v~p~vl~~fL~L 387 (844)
+..+...+...+..|.-+++.++..+
T Consensus 241 l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 241 CERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp HHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 44444445444444444455665554
No 22
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=72.04 E-value=88 Score=32.77 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHH
Q 003141 196 KLAELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYEST 275 (844)
Q Consensus 196 kIAaL~~~I~edPe~ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~ 275 (844)
+|-.....++.+++ .|..|+.+..++|+.++--|+..|-++.|+. ..++.++
T Consensus 20 kiK~a~ela~~~e~----~l~~L~~LL~dkD~~vk~raL~~LeellK~~-------------------~~~l~~~----- 71 (265)
T 3b2a_A 20 QILDAVSLALEDKR----ALFLILELAGEDDETTRLRAFVALGEILKRA-------------------DSDLRMM----- 71 (265)
T ss_dssp CHHHHHHHHHHCHH----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-------------------CHHHHHH-----
T ss_pred hHHHHHHHHHhchh----HHHHHHHHHhccchHHHHHHHHHHHHHHHhc-------------------cccccHH-----
Confidence 35556667788877 5778888889999999877887777774431 1223333
Q ss_pred HHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccC
Q 003141 276 LLSAYKAYLQKLIASEKQP--VFHQVVVRCICNLLDAVPH-FNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGK 352 (844)
Q Consensus 276 Ll~~Y~~yLq~Le~l~k~~--~l~~~Avkclc~LL~~~Ph-FNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~ 352 (844)
.|+.++..+..+.++. ...-.|++|+-.||.+.|- =|--..++..++.-+-++++-.+..+.+.+..+ +-
T Consensus 72 ---~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv--- 144 (265)
T 3b2a_A 72 ---VLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QP--- 144 (265)
T ss_dssp ---HHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CB---
T ss_pred ---HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cc---
Confidence 3445666676665544 5778899999999998874 233346777777777777777777777777766 21
Q ss_pred CCCccHHHHHHHHHHhhhhcCCCCCHHHHHHhhcc
Q 003141 353 HGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSL 387 (844)
Q Consensus 353 ~~G~~sleiVr~I~~~vK~k~~~v~p~vl~~fL~L 387 (844)
-..+-.++..|..++++++-.+..-.+..|+.+
T Consensus 145 --~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 145 --LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp --SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred --ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 123345777788888776655555456666655
No 23
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=69.27 E-value=13 Score=35.72 Aligned_cols=110 Identities=12% Similarity=0.098 Sum_probs=73.0
Q ss_pred HHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003141 213 KSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEK 292 (844)
Q Consensus 213 ~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~k 292 (844)
+.+..|+.+....+..++.-|+.+|..+-.+ .+. .... -++. ..+..|..+-.
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----------~~~-----~~~~-----i~~~-------g~i~~L~~lL~ 106 (210)
T 4db6_A 54 GALPALVQLLSSPNEQILQEALWALSNIASG----------GNE-----QIQA-----VIDA-------GALPALVQLLS 106 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----------CHH-----HHHH-----HHHT-------TCHHHHHHHTT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC----------CcH-----HHHH-----HHHC-------CCHHHHHHHHc
Confidence 3577888888888888888888777766210 000 0000 1111 23344444433
Q ss_pred --CcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhh
Q 003141 293 --QPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 349 (844)
Q Consensus 293 --~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~ 349 (844)
++.++..|+.+++.|....++.- ....++..++..|.+++..++..|+.+|..+...
T Consensus 107 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 34678888999999887554421 1236789999999999999999999999999875
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=61.15 E-value=17 Score=40.74 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=50.6
Q ss_pred HHHHHHHhcC--CcchHHHHHHHHHHHhhcC-C--CCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhh
Q 003141 283 YLQKLIASEK--QPVFHQVVVRCICNLLDAV-P--HFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 349 (844)
Q Consensus 283 yLq~Le~l~k--~~~l~~~Avkclc~LL~~~-P--hFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~ 349 (844)
.+..|..+.. ++.+...|+.|++.|.... | .+.....++..++..|.+.+..|+..+|.+|..|...
T Consensus 216 ~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 216 AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 3444444433 3457788999999998654 3 3445567899999999999999999999999999864
No 25
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=60.00 E-value=58 Score=34.39 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=45.5
Q ss_pred CCcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhh
Q 003141 292 KQPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 349 (844)
Q Consensus 292 k~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~ 349 (844)
.++.++..|+.+++.|....|++- .....+..||..|.+++..|...|+.+|..|+..
T Consensus 179 ~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 179 QVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 355678889999999988866531 1225778889999999999999999999998874
No 26
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=59.39 E-value=57 Score=38.00 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=90.2
Q ss_pred HHHHHHHHHH--hCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHH
Q 003141 196 KLAELGMALL--ADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYE 273 (844)
Q Consensus 196 kIAaL~~~I~--edPe~ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE 273 (844)
+++-|+..+. ++|+.-+-....|..=+.+.++.+|.+|+.+|..+- .. +
T Consensus 92 rl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-------------~~--------e-------- 142 (621)
T 2vgl_A 92 QIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-------------SR--------E-------- 142 (621)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-------------CH--------H--------
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-------------CH--------H--------
Confidence 4555555544 556666666666776667788888888888887761 11 1
Q ss_pred HHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccC
Q 003141 274 STLLSAYKAYLQKLI-ASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGK 352 (844)
Q Consensus 274 ~~Ll~~Y~~yLq~Le-~l~k~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~ 352 (844)
+.......|..+. .-..+|..+..|+-|+..+....|+.=-...++..+...|+|++..|..-|+.+|.++...++.
T Consensus 143 --~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 143 --MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp --HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred --HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence 1111111222221 1234567889999999999987775321135778888889999999999899999998887632
Q ss_pred CCCccHHHHHHHHHHhhhh
Q 003141 353 HGGVATVEAVRLIANHVKV 371 (844)
Q Consensus 353 ~~G~~sleiVr~I~~~vK~ 371 (844)
.-....-.+++.+.+++-.
T Consensus 221 ~~~~~~~~~~~~L~~ll~~ 239 (621)
T 2vgl_A 221 EFKTSVSLAVSRLSRIVTS 239 (621)
T ss_dssp HHTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 0000111256666666644
No 27
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=57.57 E-value=25 Score=40.75 Aligned_cols=115 Identities=10% Similarity=0.128 Sum_probs=80.1
Q ss_pred HHHHHHhCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHH
Q 003141 200 LGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSA 279 (844)
Q Consensus 200 L~~~I~edPe~ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~ 279 (844)
++...-++|+.-+-....|..-+.+.++.+|.+|+.+|..+- + . ++ ..
T Consensus 94 ~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~------------~-~--------~~--~~--------- 141 (618)
T 1w63_A 94 AMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG------------S-S--------EM--CR--------- 141 (618)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC------------C-H--------HH--HH---------
T ss_pred HHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC------------C-H--------HH--HH---------
Confidence 344444567766777777777777778888888888877762 1 0 10 00
Q ss_pred HHHHHHHHHHh--cCCcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhc
Q 003141 280 YKAYLQKLIAS--EKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 350 (844)
Q Consensus 280 Y~~yLq~Le~l--~k~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D 350 (844)
..+..+.++ ..+|.++..|+.|+..+....|+.= ..++..+...|+|++..|..-++.+|.++...+
T Consensus 142 --~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 142 --DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp --HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence 112222222 2456789999999999999888632 367778888899999999999999999988765
No 28
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=57.12 E-value=15 Score=37.85 Aligned_cols=100 Identities=13% Similarity=0.068 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCcc--hHHHHHHHHHHHhhcCC-CCc-------hHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHhhhc
Q 003141 282 AYLQKLIASEKQPV--FHQVVVRCICNLLDAVP-HFN-------CCEILLEVVVRN-LGSQDVVVRKLCCATIKSLFTNE 350 (844)
Q Consensus 282 ~yLq~Le~l~k~~~--l~~~Avkclc~LL~~~P-hFN-------f~~nLL~~lV~k-Lg~~~~~Va~~c~~al~~Lf~~D 350 (844)
.++..+.+...|++ ....|+.|++.++.... .+. +...++..+|-+ ||+....++..++.++..++...
T Consensus 55 ~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~ 134 (278)
T 4ffb_C 55 RDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD 134 (278)
T ss_dssp SCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc
Confidence 33444444556664 45778999999887532 221 224566667777 89999999988999998887754
Q ss_pred cCCCCccHHHHHHHHHHhhhhcCCCCCHHHHHHhhc
Q 003141 351 GKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMS 386 (844)
Q Consensus 351 ~~~~G~~sleiVr~I~~~vK~k~~~v~p~vl~~fL~ 386 (844)
..+. .++..|...++.++..+....+.++-.
T Consensus 135 --~~~~---~~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 135 --TSIT---QSVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp --SSSH---HHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred --CcHH---HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 2222 355666667776665554444444433
No 29
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=56.67 E-value=76 Score=30.36 Aligned_cols=86 Identities=13% Similarity=0.097 Sum_probs=50.8
Q ss_pred HHHHHHhcCCc--chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCCccHHHH
Q 003141 284 LQKLIASEKQP--VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEA 361 (844)
Q Consensus 284 Lq~Le~l~k~~--~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~~slei 361 (844)
+..|..+..++ .++..|+.++..+-. ...+..++..|.|++..|+..++.+|..+-. -++
T Consensus 114 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~ 175 (211)
T 3ltm_A 114 VEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERV 175 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhH
Confidence 34444443333 467777777777621 2467777788888888888888888877611 134
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHhhcc
Q 003141 362 VRLIANHVKVKNCQLHPDFVEVFMSL 387 (844)
Q Consensus 362 Vr~I~~~vK~k~~~v~p~vl~~fL~L 387 (844)
+..+.+++...+..|+...+..|-.+
T Consensus 176 ~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 176 RAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 55555565555544555555554443
No 30
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=56.57 E-value=90 Score=29.55 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 003141 295 VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSL 346 (844)
Q Consensus 295 ~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~L 346 (844)
.++..|+.++..+-. ...+..++..+.|++..|+..++.+|..+
T Consensus 122 ~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 122 FVRIAAAFALGEIGD--------ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHHHHHHHHHHTC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 456666666666521 24566677777777777777777777766
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=56.30 E-value=64 Score=30.65 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=66.4
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 003141 214 SLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEK- 292 (844)
Q Consensus 214 ~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~k- 292 (844)
.+..|+.++...+..++.-|..+|..+-.+ ++ + ....+ .+. ..+..|..+..
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----------~~-~-------~~~~~--~~~-------~~i~~L~~ll~~ 149 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASG----------GN-E-------QIQAV--IDA-------GALPALVQLLSS 149 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----------CH-H-------HHHHH--HHT-------THHHHHHHHTTC
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcC----------CH-H-------HHHHH--HHc-------CcHHHHHHHHcC
Confidence 456666777666666766666666655210 00 0 00001 111 34555555433
Q ss_pred -CcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHh
Q 003141 293 -QPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLF 347 (844)
Q Consensus 293 -~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf 347 (844)
++..+..|+.+++.|....|+.- .....+..++..+.+.+..++..|+.+|..|-
T Consensus 150 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 150 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 34578889999999987644321 11256888999999999999999999998773
No 32
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=55.83 E-value=1.1e+02 Score=32.54 Aligned_cols=66 Identities=6% Similarity=0.095 Sum_probs=48.8
Q ss_pred HHHHHHhcC--CcchHHHHHHHHHHHhhcCCCC--chHH-HHHHHHHHhhCCCcHHHHHHHHHHHHHHhhh
Q 003141 284 LQKLIASEK--QPVFHQVVVRCICNLLDAVPHF--NCCE-ILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 349 (844)
Q Consensus 284 Lq~Le~l~k--~~~l~~~Avkclc~LL~~~PhF--Nf~~-nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~ 349 (844)
++.|..... ++..+..+++|+..|....|.+ .|-. .|+..++..+.+.++.|+..+++.+..+...
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 455544443 3457888999999999887653 4444 7888888888899999998888887776553
No 33
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=55.73 E-value=54 Score=38.77 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHhhcCCCCchHHHH------HHHHHHhhCCCcHHHHHH
Q 003141 267 KKMRFYESTLLSAYKAYLQKLIASEKQP--VFHQVVVRCICNLLDAVPHFNCCEIL------LEVVVRNLGSQDVVVRKL 338 (844)
Q Consensus 267 ~~lr~fE~~Ll~~Y~~yLq~Le~l~k~~--~l~~~Avkclc~LL~~~PhFNf~~nL------L~~lV~kLg~~~~~Va~~ 338 (844)
..+|.=|.-+.+ ...+..|..+-... ..+.-|++|+..|+.+.|+-+. +-| +..+|..|+|+.+.|+..
T Consensus 109 ~~~~~~d~f~~~--~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q-~~Il~~p~gi~~Lv~lL~d~rE~iRne 185 (651)
T 3grl_A 109 LGSQFTEIFIKQ--QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQ-QIILVSPMGVSRLMDLLADSREVIRND 185 (651)
T ss_dssp HHHHHHHHHHHS--THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHH-HHHHHSTTHHHHHHGGGGCSSHHHHHH
T ss_pred HHHHHHHHHHcC--CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHH-HHHHhCcccHHHHHHHHhCchHHHHHH
Confidence 346665553333 45666666654433 4578899999999999998443 233 457899999999999988
Q ss_pred HHHHHHHHhhhc
Q 003141 339 CCATIKSLFTNE 350 (844)
Q Consensus 339 c~~al~~Lf~~D 350 (844)
++-.|..|-+..
T Consensus 186 allLL~~Lt~~n 197 (651)
T 3grl_A 186 GVLLLQALTRSN 197 (651)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC
Confidence 887777776654
No 34
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=54.95 E-value=25 Score=37.66 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=47.0
Q ss_pred CcchHHHHHHHHHHHhhcC-C--CCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhh
Q 003141 293 QPVFHQVVVRCICNLLDAV-P--HFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 349 (844)
Q Consensus 293 ~~~l~~~Avkclc~LL~~~-P--hFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~ 349 (844)
++.++..|+.+++.|.... | .+.+...++..++..|.+.+..++..++.+|..+...
T Consensus 163 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 163 RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 3467899999999998754 4 3444568999999999999999999999999999774
No 35
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=54.69 E-value=88 Score=38.91 Aligned_cols=107 Identities=14% Similarity=0.261 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003141 212 IKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASE 291 (844)
Q Consensus 212 i~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~ 291 (844)
=..+..|+....+.+..+|..|+.+|..+..-+ | + . +....++.|...-
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~-~--------~---------~-------------~~~~i~~~Ll~~l 95 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV-K--------E---------Y-------------QVETIVDTLCTNM 95 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS-C--------H---------H-------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-C--------H---------H-------------HHHHHHHHHHHHh
Confidence 355667777777888899999999988775321 1 1 0 1112333343332
Q ss_pred --CCcchHHHHHHHHHHHhhcCCCC--------chHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHHhhh
Q 003141 292 --KQPVFHQVVVRCICNLLDAVPHF--------NCCEILLEVVVRNLG-SQDVVVRKLCCATIKSLFTN 349 (844)
Q Consensus 292 --k~~~l~~~Avkclc~LL~~~PhF--------Nf~~nLL~~lV~kLg-~~~~~Va~~c~~al~~Lf~~ 349 (844)
.++..+..|..|+..+....+.. ++...|+..++..+. +.+..++..++.++.++...
T Consensus 96 ~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 96 LSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 23456888888888888777654 267899999999998 47888888888898888754
No 36
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=54.04 E-value=99 Score=38.43 Aligned_cols=138 Identities=14% Similarity=0.227 Sum_probs=84.8
Q ss_pred HHHHHHHhCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCC---------------CCCchhhhhhhhh
Q 003141 199 ELGMALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRI---------------RLPTEKELEMKVS 263 (844)
Q Consensus 199 aL~~~I~edPe~ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrI---------------R~lte~E~~~kvs 263 (844)
.++..+..|+..-.+.+..|+..+....+.|.+|+. .++.+|+.++++ ++..+ -+.
T Consensus 202 ~~~~~~~~d~~~~~~~~~ali~~~~~dKpsI~~l~~----~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~-----~i~ 272 (997)
T 1vsy_5 202 KIHRKLMTDYKDIGRLIFLLIECCRVNELEIGMYAD----KILTDIVIGIKIPSSVCVISDQAFLPLAPPDG-----TIN 272 (997)
T ss_dssp HHHHHGGGCHHHHHHHHHHHHHTCSCSSSSTTTHHH----HHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCS-----STT
T ss_pred hhhhHHhcChHHHHHHHHHHHHhCcCCCHHHHHHHH----HHHHHHHhcccCchHHHHHHHHHHhccCCCcH-----HHH
Confidence 445677788888888888888887777778877766 333455544332 22211 111
Q ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCC
Q 003141 264 KEVK--------KMRFYESTLLSAYKAYLQKLIASEKQPV----FHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQ 331 (844)
Q Consensus 264 Kev~--------~lr~fE~~Ll~~Y~~yLq~Le~l~k~~~----l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~ 331 (844)
+.+. +...|++.+-+.....+..+ ..+.. ....|.+++..|+. .++--+..+++.++++.+.+.
T Consensus 273 ~~~~~~~~~~~~~r~~~~~~~~~L~~~l~~~~---~~~~h~~Wk~~~~~~~~l~~l~~-r~d~~~~~~~v~~~~~~l~~d 348 (997)
T 1vsy_5 273 LQVEAVKLAKKKKREYYLSLLVDLQDKLLDKL---DNEKDMGWKIRMFILRFVTQIQS-NLESKPDKRAVFSIISQISTK 348 (997)
T ss_dssp SHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH---HSSTTCCSCHHHHHHHHHHHHTC-CSSCCCCHHHHHHHHGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCCChhHHHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHhhcCC
Confidence 2221 22223332222222222222 22223 45666777777665 444556679999999999999
Q ss_pred cHHHHHHHHHHHHHHhhh
Q 003141 332 DVVVRKLCCATIKSLFTN 349 (844)
Q Consensus 332 ~~~Va~~c~~al~~Lf~~ 349 (844)
.+.++..|+.++..+|..
T Consensus 349 hp~~R~~a~~~l~~il~~ 366 (997)
T 1vsy_5 349 HPEIIHLVVKSLLSTCNK 366 (997)
T ss_dssp CHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999888886
No 37
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=53.95 E-value=12 Score=36.98 Aligned_cols=106 Identities=11% Similarity=0.037 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhhcCCCC---chHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCC-
Q 003141 280 YKAYLQKLIASEKQPVFHQVVVRCICNLLDAVPHF---NCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGG- 355 (844)
Q Consensus 280 Y~~yLq~Le~l~k~~~l~~~Avkclc~LL~~~PhF---Nf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G- 355 (844)
|..|+..|. +.++..+..|+.+++.++...++. =.....+..+|..|.+++..++..++.+|..+...++....
T Consensus 14 ~~~~~~~L~--s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 14 LPQMTQQLN--SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp HHHHHHHHH--SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 444555543 345678888999998888762210 01124678899999999999999999999999874311110
Q ss_pred ccHHHHHHHHHHhhhhcCCCCCHHHHHHhhcc
Q 003141 356 VATVEAVRLIANHVKVKNCQLHPDFVEVFMSL 387 (844)
Q Consensus 356 ~~sleiVr~I~~~vK~k~~~v~p~vl~~fL~L 387 (844)
.+...++..+.++++..+..+...++.++-+|
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l 123 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNI 123 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 00111455555666554333333334444444
No 38
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=52.91 E-value=48 Score=33.36 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=64.7
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---h
Q 003141 214 SLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIA---S 290 (844)
Q Consensus 214 ~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~---l 290 (844)
.+..|+.++.+.+..+|..|+.+|..+..+ .+ . + ...+..|.. -
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~----------~~---~--~------------------~~l~~~L~~~~~~ 101 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQIKIC----------KK---C--E------------------DNVFNILNNMALN 101 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHSCCC----------TT---T--H------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhccc----------cc---c--c------------------hHHHHHHHHHHhc
Confidence 567778888888899999998887654210 00 0 0 012222221 1
Q ss_pred cCCcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 003141 291 EKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSL 346 (844)
Q Consensus 291 ~k~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~L 346 (844)
..++.++..|+.++..+-...|.+ ...++..++..|.|++..|+..++.+|..+
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~--~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIY--SPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHhccCCcc--cHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 234557788888888876555543 347888889999999999988888887654
No 39
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=52.72 E-value=47 Score=36.91 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=50.7
Q ss_pred HHHHHHHhc-C--CcchHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhh
Q 003141 283 YLQKLIASE-K--QPVFHQVVVRCICNLLDAVPH--FNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 349 (844)
Q Consensus 283 yLq~Le~l~-k--~~~l~~~Avkclc~LL~~~Ph--FNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~ 349 (844)
.+..|..+. . ++.+...|+.+++.|....|. +.....++..++..|.+.+..|...||.+|..|...
T Consensus 203 ~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 203 ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 344444443 2 345778899999999877543 444567899999999999999999999999998754
No 40
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=52.68 E-value=23 Score=39.66 Aligned_cols=81 Identities=9% Similarity=0.058 Sum_probs=54.3
Q ss_pred CCcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhc-cCCCCccHHHHHHHHHH
Q 003141 292 KQPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE-GKHGGVATVEAVRLIAN 367 (844)
Q Consensus 292 k~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D-~~~~G~~sleiVr~I~~ 367 (844)
.++.++..|+.+++.|....|++- ....++..|+..|.+.+..+...|+.+|..|...+ +...-...-.++..+.+
T Consensus 185 ~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 264 (530)
T 1wa5_B 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK 264 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHH
Confidence 456788999999999987654311 12357888999999989999999999999999765 21111111124555555
Q ss_pred hhhhc
Q 003141 368 HVKVK 372 (844)
Q Consensus 368 ~vK~k 372 (844)
++...
T Consensus 265 lL~~~ 269 (530)
T 1wa5_B 265 LIYSM 269 (530)
T ss_dssp HTTCC
T ss_pred HHcCC
Confidence 55433
No 41
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=52.56 E-value=38 Score=35.52 Aligned_cols=107 Identities=13% Similarity=0.114 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhc
Q 003141 276 LLSAYKAYLQKLIASEK--QPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 350 (844)
Q Consensus 276 Ll~~Y~~yLq~Le~l~k--~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D 350 (844)
+.+.|..++..|..+-+ |+.++.-|+..+=++|...|--- --+++|-.+|+-+-++|++|+=.+..||+.|+.+-
T Consensus 27 la~~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 27 LALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp HHHHCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHhchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC
Confidence 67888899999999854 56788888999999998865421 22478888999999999999999999999999986
Q ss_pred cCCCCccHH-HHHHHHHHhhhhcCCCCCHHHHHHh
Q 003141 351 GKHGGVATV-EAVRLIANHVKVKNCQLHPDFVEVF 384 (844)
Q Consensus 351 ~~~~G~~sl-eiVr~I~~~vK~k~~~v~p~vl~~f 384 (844)
+- +.-++ -++..+..++++++--+...+.+.+
T Consensus 107 pL--~~~~y~Kl~~aL~dlik~~~~il~~eaae~L 139 (265)
T 3b2a_A 107 PM--GSKTFLKAAKTLVSLLESPDDMMRIETIDVL 139 (265)
T ss_dssp CB--CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHhcCCCchHHHHHHHHh
Confidence 52 33333 3567777777765543333334443
No 42
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=49.87 E-value=38 Score=36.25 Aligned_cols=68 Identities=7% Similarity=0.039 Sum_probs=48.9
Q ss_pred HHHHHHHhcC--CcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHhhhc
Q 003141 283 YLQKLIASEK--QPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNLGS-QDVVVRKLCCATIKSLFTNE 350 (844)
Q Consensus 283 yLq~Le~l~k--~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kLg~-~~~~Va~~c~~al~~Lf~~D 350 (844)
.+..|..+-. ++.++..|+.+++.|....|++- ....++..++..|.+ .+..++..|+.+|..+....
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 3444444433 45688999999999987655311 112568889999985 78999999999999999764
No 43
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=48.66 E-value=92 Score=37.80 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhCHHHhH-----HHHHHHHHHhhccChhhHHHHHHHHHHHHhh-----hcCCCC----CCC----Cch
Q 003141 194 KCKLAELGMALLADPESNI-----KSLKEMLQIARDDNPSISKLGFLSLLAVFKD-----IIPGYR----IRL----PTE 255 (844)
Q Consensus 194 kdkIAaL~~~I~edPe~ni-----~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkD-----IlP~Yr----IR~----lte 255 (844)
+.+.+..-..|-.+++..- +.+..|+.+..+.+...++.|..+|..+-.+ ++++++ |++ ++.
T Consensus 512 qe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~ 591 (810)
T 3now_A 512 QELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ 591 (810)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC
Confidence 3344444444445665332 2467788888887777777787777665432 233322 111 110
Q ss_pred hhhhhhhhHHHHHHHHH----HH---HHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHhhcCCCCch---HHHHHHH
Q 003141 256 KELEMKVSKEVKKMRFY----ES---TLLSAYKAYLQKLIAS--EKQPVFHQVVVRCICNLLDAVPHFNC---CEILLEV 323 (844)
Q Consensus 256 ~E~~~kvsKev~~lr~f----E~---~Ll~~Y~~yLq~Le~l--~k~~~l~~~Avkclc~LL~~~PhFNf---~~nLL~~ 323 (844)
.........-...|.+. |. .+.. ...+..|+.+ ...+.++..|+.|+|.|....+.+.. ....+..
T Consensus 592 ~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~--aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~ 669 (810)
T 3now_A 592 DCTALENFESLMALTNLASMNESVRQRIIK--EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKF 669 (810)
T ss_dssp TSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHH
Confidence 00000000001111111 11 1111 1345556654 34456889999999999865332211 1257889
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHHhh
Q 003141 324 VVRNLGSQDVVVRKLCCATIKSLFT 348 (844)
Q Consensus 324 lV~kLg~~~~~Va~~c~~al~~Lf~ 348 (844)
+|..+++.+..+...+|.+|..|..
T Consensus 670 Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 670 LALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999877
No 44
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=46.65 E-value=92 Score=29.74 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=21.0
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHH
Q 003141 214 SLKEMLQIARDDNPSISKLGFLSLLAV 240 (844)
Q Consensus 214 ~Lk~L~~m~~~k~~~vrkLAilSL~~V 240 (844)
.+..|+.++.+.+..+|..|+..|..+
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~ 46 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKI 46 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 366677777788889998888888765
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=46.29 E-value=85 Score=34.35 Aligned_cols=141 Identities=11% Similarity=0.097 Sum_probs=79.8
Q ss_pred HhCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003141 205 LADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYL 284 (844)
Q Consensus 205 ~edPe~ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yL 284 (844)
+++|+...+.+..|+.++...++.++..|..+|..+-.+ +.. .+. +.. +.+ .....+
T Consensus 9 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-----------~~~-----~~~---~~~-~~~---~i~~Lv 65 (529)
T 1jdh_A 9 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-----------EAS-----RHA---IMR-SPQ---MVSAIV 65 (529)
T ss_dssp --------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-----------HHH-----HHH---HHT-CHH---HHHHHH
T ss_pred CchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-----------Ccc-----HHH---HHh-Ccc---hHHHHH
Confidence 456777777889999999888999999998888877321 000 000 000 001 112223
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHhhcCCCCchHH-----HHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCCc-cH
Q 003141 285 QKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCE-----ILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGV-AT 358 (844)
Q Consensus 285 q~Le~l~k~~~l~~~Avkclc~LL~~~PhFNf~~-----nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~-~s 358 (844)
+.|.. ..++..+..|+.+++.|-.. ++ .+. ..+..++..|.+++..+...++.+|..+...+...... ..
T Consensus 66 ~~L~~-~~~~~~~~~a~~~L~~ls~~-~~--~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 141 (529)
T 1jdh_A 66 RTMQN-TNDVETARCTAGTLHNLSHH-RE--GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 141 (529)
T ss_dssp HHHHH-CCCHHHHHHHHHHHHHHTTS-HH--HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHhc-CCCHHHHHHHHHHHHHHHcC-ch--hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 33321 22455677788888886432 22 222 46778999999999999999999999998875211100 01
Q ss_pred HHHHHHHHHhhhhc
Q 003141 359 VEAVRLIANHVKVK 372 (844)
Q Consensus 359 leiVr~I~~~vK~k 372 (844)
..+|..+.++++..
T Consensus 142 ~g~i~~L~~ll~~~ 155 (529)
T 1jdh_A 142 AGGLQKMVALLNKT 155 (529)
T ss_dssp HTHHHHHHHGGGCC
T ss_pred cCCHHHHHHHHhcC
Confidence 23555666666543
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=45.03 E-value=1.1e+02 Score=28.93 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=39.8
Q ss_pred HHHHHHHhcCC--cchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 003141 283 YLQKLIASEKQ--PVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSL 346 (844)
Q Consensus 283 yLq~Le~l~k~--~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~L 346 (844)
.+..|..+-.+ +..+..|+.++..+-. ...+..++..|.+++..|+..++.+|..+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34444444333 4577888888877622 24677888889999999999999988876
No 47
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=44.22 E-value=4.6e+02 Score=30.91 Aligned_cols=54 Identities=9% Similarity=0.037 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhh
Q 003141 295 VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 349 (844)
Q Consensus 295 ~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~ 349 (844)
.++..|..|+-.|....|.. .-..++..++..+.+++..++..++.+|..+...
T Consensus 336 ~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~ 389 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEG 389 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 46788888888887766643 3356888889999999999999999999988653
No 48
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=42.83 E-value=1.9e+02 Score=33.87 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCc--chHHHHHHHHHHHhhcCCC----CchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhh
Q 003141 282 AYLQKLIASEKQP--VFHQVVVRCICNLLDAVPH----FNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 349 (844)
Q Consensus 282 ~yLq~Le~l~k~~--~l~~~Avkclc~LL~~~Ph----FNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~ 349 (844)
..+..|...-.++ .++..|+.++..+....+. -.|-..++..+++.|.++ ..|+..|+.+|..+...
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 3444444444444 4678888888888776542 356679999999999985 88899999999998875
No 49
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=42.24 E-value=1e+02 Score=34.20 Aligned_cols=90 Identities=10% Similarity=0.057 Sum_probs=56.1
Q ss_pred HHHHHHHhcC--CcchHHHHHHHHHHHhhcCCCCc---hHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHHhhhccCCCCc
Q 003141 283 YLQKLIASEK--QPVFHQVVVRCICNLLDAVPHFN---CCEILLEVVVRNL-GSQDVVVRKLCCATIKSLFTNEGKHGGV 356 (844)
Q Consensus 283 yLq~Le~l~k--~~~l~~~Avkclc~LL~~~PhFN---f~~nLL~~lV~kL-g~~~~~Va~~c~~al~~Lf~~D~~~~G~ 356 (844)
.+..|..+-. ++.++..|+.+++.|....|++- .....+..++..| .+.+..+...|+.+|..|....+...-.
T Consensus 161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 240 (528)
T 4b8j_A 161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE 240 (528)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 3444444433 44678899999999976655411 1113567888888 6778899999999999998875321111
Q ss_pred cHHHHHHHHHHhhhhc
Q 003141 357 ATVEAVRLIANHVKVK 372 (844)
Q Consensus 357 ~sleiVr~I~~~vK~k 372 (844)
..-.++..+.+++...
T Consensus 241 ~~~~~l~~L~~lL~~~ 256 (528)
T 4b8j_A 241 QTRPALPALARLIHSN 256 (528)
T ss_dssp HHTTHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 1112455555555443
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=41.42 E-value=2.1e+02 Score=33.40 Aligned_cols=66 Identities=8% Similarity=0.136 Sum_probs=48.8
Q ss_pred HHHHHHHHhcC---CcchHHHHHHHHHHHhhcCCC-----CchHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHh
Q 003141 282 AYLQKLIASEK---QPVFHQVVVRCICNLLDAVPH-----FNCCEILLEVVVRNLGSQ--DVVVRKLCCATIKSLF 347 (844)
Q Consensus 282 ~yLq~Le~l~k---~~~l~~~Avkclc~LL~~~Ph-----FNf~~nLL~~lV~kLg~~--~~~Va~~c~~al~~Lf 347 (844)
.++..|..... ++..+..|+.++..+....++ ..+...|+..++..+.++ +..|+..++.++..++
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSL 209 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 34445544433 456788899999999876543 246778999999999998 7889988888888763
No 51
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=39.82 E-value=1.5e+02 Score=29.57 Aligned_cols=127 Identities=9% Similarity=0.018 Sum_probs=76.1
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 003141 214 SLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEK- 292 (844)
Q Consensus 214 ~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~k- 292 (844)
.+..|+..+.+.+..+|..|+.+|..+- + . ..+..|..+-.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~------------~---------~-----------------~~~~~L~~~l~d 65 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG------------G---------Q-----------------DAVRLAIEFCSD 65 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC------------C---------H-----------------HHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC------------C---------c-----------------hHHHHHHHHHcC
Confidence 4567777778888888888888887762 0 0 11222222222
Q ss_pred -CcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHhhh
Q 003141 293 -QPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVR-NLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVK 370 (844)
Q Consensus 293 -~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~-kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~~sleiVr~I~~~vK 370 (844)
++..+..|+.++..+-.. + .....++.++.. .+++++..|+..++.+|..+-..++ ...-.++..+...+.
T Consensus 66 ~~~~vR~~A~~aL~~l~~~-~--~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~ 138 (280)
T 1oyz_A 66 KNYIRRDIGAFILGQIKIC-K--KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAF 138 (280)
T ss_dssp SSHHHHHHHHHHHHHSCCC-T--TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhccc-c--ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhh
Confidence 345677788887765321 1 122356666663 4688999999999999998865432 223356666666665
Q ss_pred hcCCCCCHHHHHHhh
Q 003141 371 VKNCQLHPDFVEVFM 385 (844)
Q Consensus 371 ~k~~~v~p~vl~~fL 385 (844)
..+..|+-.++..+-
T Consensus 139 d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 139 DKSTNVRRATAFAIS 153 (280)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 544444444444443
No 52
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=37.51 E-value=65 Score=33.84 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=52.6
Q ss_pred CCCCch--HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHhhhhcCCCCCHHHHHHhhcc
Q 003141 311 VPHFNC--CEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQLHPDFVEVFMSL 387 (844)
Q Consensus 311 ~PhFNf--~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~~sleiVr~I~~~vK~k~~~v~p~vl~~fL~L 387 (844)
.++|+. ..-++-.||-++||+.+.|++.+...+..+..-- + .+ .++..+..-++.+|..++.+.++++.++
T Consensus 122 ~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---~--~~-~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 122 ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---G--PL-KMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---C--HH-HHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC---C--HH-HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 455654 3578889999999999999998888887776542 1 22 2666666677889888888888887776
No 53
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=36.92 E-value=4.4e+02 Score=28.63 Aligned_cols=86 Identities=10% Similarity=0.121 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHhhcCCCCchHH------HHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 003141 275 TLLSAYKAYLQKLIASEKQPV--FHQVVVRCICNLLDAVPHFNCCE------ILLEVVVRNLGSQDVVVRKLCCATIKSL 346 (844)
Q Consensus 275 ~Ll~~Y~~yLq~Le~l~k~~~--l~~~Avkclc~LL~~~PhFNf~~------nLL~~lV~kLg~~~~~Va~~c~~al~~L 346 (844)
.|...|..|.....++...++ .+.++++.+.+||...+.|++-. +-|.++.+.|.|+++.|..-+-+.+ .+
T Consensus 202 fL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVF-Kv 280 (341)
T 1upk_A 202 FLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVF-KV 280 (341)
T ss_dssp HHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHH-HH
T ss_pred HHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhhe-ee
Confidence 355677777777777765554 58999999999999999887643 3577889999999998865444444 56
Q ss_pred hhhccCCCCccHHHHHHHH
Q 003141 347 FTNEGKHGGVATVEAVRLI 365 (844)
Q Consensus 347 f~~D~~~~G~~sleiVr~I 365 (844)
|-.-|+ .+-.|+..+
T Consensus 281 FVANP~----K~~~I~~IL 295 (341)
T 1upk_A 281 FVANPN----KTQPILDIL 295 (341)
T ss_dssp HHHCSS----CCHHHHHHH
T ss_pred eeeCCC----CChHHHHHH
Confidence 665443 334455444
No 54
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=36.41 E-value=48 Score=39.60 Aligned_cols=149 Identities=9% Similarity=0.058 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003141 211 NIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIAS 290 (844)
Q Consensus 211 ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l 290 (844)
..+.+..|+.+....+..++..|+.+|..+-.+- ... . .+.... +.+ ...++.|..
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-----------~~~-----~---~i~~~~-~~i---~~Lv~~L~~- 203 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-----------ASR-----H---AIMRSP-QMV---SAIVRTMQN- 203 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-----------HHH-----H---HHTTCH-HHH---HHHHHHHHH-
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-----------hhH-----H---HHHhcc-ChH---HHHHHHHcC-
Confidence 3566777777777888899999988888774321 000 0 000000 111 112222221
Q ss_pred cCCcchHHHHHHHHHHHhhcCCCC---chHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCCcc-HHHHHHHHH
Q 003141 291 EKQPVFHQVVVRCICNLLDAVPHF---NCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVA-TVEAVRLIA 366 (844)
Q Consensus 291 ~k~~~l~~~Avkclc~LL~~~PhF---Nf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~~-sleiVr~I~ 366 (844)
..++..+..|+.+++.|-.. ++. -.....+..||..|.+.+..+...|+.+|..|...+......+ ...+|..+.
T Consensus 204 ~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv 282 (780)
T 2z6g_A 204 TNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMV 282 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHH
Confidence 12556778888888885432 221 0122578889999999999999999999999987642111000 112455666
Q ss_pred HhhhhcCCCCCHHHHHHh
Q 003141 367 NHVKVKNCQLHPDFVEVF 384 (844)
Q Consensus 367 ~~vK~k~~~v~p~vl~~f 384 (844)
++++..+..+...++.++
T Consensus 283 ~lL~~~~~~v~~~a~~aL 300 (780)
T 2z6g_A 283 ALLNKTNVKFLAITTDCL 300 (780)
T ss_dssp HGGGCCCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 666654433333333343
No 55
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=36.37 E-value=40 Score=38.91 Aligned_cols=159 Identities=10% Similarity=0.086 Sum_probs=0.0
Q ss_pred HhCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003141 205 LADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYL 284 (844)
Q Consensus 205 ~edPe~ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yL 284 (844)
+.+++...+.+..|+.++...++.++..|..+|..+ .........+...+..+ ..|
T Consensus 6 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~L-------------------a~~~~~~~~i~~~~~~i-----~~L 61 (644)
T 2z6h_A 6 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQL-------------------SKKEASRHAIMRSPQMV-----SAI 61 (644)
T ss_dssp ------CTTTHHHHHHHHTCSCHHHHHHHHHHHHHH-------------------HTSTTHHHHHTTCHHHH-----HHH
T ss_pred cchhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHH-------------------HCCChhHHHHHhccChH-----HHH
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHhhcCCCCchHHH--HHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCCccH-HHH
Q 003141 285 QKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEI--LLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVAT-VEA 361 (844)
Q Consensus 285 q~Le~l~k~~~l~~~Avkclc~LL~~~PhFNf~~n--LL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~~s-lei 361 (844)
-.+.....++..+..|+.+++.|-........-.. .+..+|..|.+++..+...|+.+|..|...+......+. ..+
T Consensus 62 v~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~ 141 (644)
T 2z6h_A 62 VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGG 141 (644)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCC
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHhhcc
Q 003141 362 VRLIANHVKVKNCQLHPDFVEVFMSL 387 (844)
Q Consensus 362 Vr~I~~~vK~k~~~v~p~vl~~fL~L 387 (844)
|..+.++++..+..+...++.+|-.|
T Consensus 142 i~~Lv~lL~~~~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 142 LQKMVALLNKTNVKFLAITTDCLQIL 167 (644)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCcCCHHHHHHHHHHHHHH
No 56
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=33.72 E-value=6.6e+02 Score=29.66 Aligned_cols=123 Identities=11% Similarity=0.174 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccccccccccccccCCCCCCCccchHHHH-hhhhcccccCChhhHHHHHHHHHHHhcCC
Q 003141 460 RMQTETISAVFETYFRILKHTMMFTAVSSEANASSIGGASGAHPLLAPCL-KGLGKFSHLIDLDYIGDLMNYLKRLAGGG 538 (844)
Q Consensus 460 k~qteiL~~vF~iYFRILK~~~~~~~~~~~~~~ra~p~a~~~s~LL~~vL-eGL~KfaHlIN~df~~DLl~vL~~Li~~~ 538 (844)
+--.+.|..+..+.|..++..... .-| .|= -..+|.+|+.++..+|-..
T Consensus 348 ~~~~~KLD~im~llf~~~~~~~~~-----------------------~~l~~~~-------~~~lf~~Ll~~F~~~ILpT 397 (649)
T 3tj1_A 348 KELSTKLDSILTLVSTHVEEQVTP-----------------------ESLESGE-------GVGVFNTLTTLFKTHVLPT 397 (649)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCH-----------------------HHHHSST-------HHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCC-----------------------Cccccch-------HHHHHHHHHHHHHHhcccc
Confidence 455778888888888888765210 001 010 0368999999999977431
Q ss_pred CCCCCCCCCCCCccchhhHHHHHHHHHHHHhhccccccCChHHHHHHHHHhhhccCC-CCChHHHHHHHHHHHhhcccCC
Q 003141 539 SSNDGPSQKNSNHLTVTERLRCCIVAFRVMRNNLDALNVDLQDFFVQLYNLILEYRP-GRDQGEVLAEALKIMLCDDRQH 617 (844)
Q Consensus 539 ~~~~~~~~~~~~~ls~~~~L~ci~taF~LL~~~g~alniD~~rFY~~LY~~L~~~~~-~~~~~~~ll~~L~~~l~~~~~~ 617 (844)
+. +-..++ ..|.+.+-..+ + ...|...|...++++.- ...+.. -+.-|-.++.+.+.+
T Consensus 398 ~~------------sr~vQF----l~Fy~cs~~~~-~---~~~Fl~~L~~~~~~~~~~~~~Rqa-AaaYLaSflARAk~v 456 (649)
T 3tj1_A 398 YY------------TRSIQY----IMFHVSQQQLE-L---MDSFLVTLIDISFAVNEAAEKKIK-SLQYLGSYIARAKKL 456 (649)
T ss_dssp CS------------CSSTTH----HHHHHHTTSHH-H---HHHHHHHHHHHHHCSSSCHHHHHH-HHHHHHHHHHHBTTC
T ss_pred cc------------CccHHH----HHHHHHhCCHH-H---HHHHHHHHHHHHhCCCCcHHHHHH-HHHHHHHHHHHHhcC
Confidence 11 111122 33555543222 1 46888888888876432 112211 112233344555678
Q ss_pred cHHHHHHHHHHHHHHH
Q 003141 618 DMQKAAAFVKRLATFS 633 (844)
Q Consensus 618 ~~~RvaAFiKRLl~~a 633 (844)
+..-|..-+.+|++.+
T Consensus 457 ~~~~v~~vl~~L~~wl 472 (649)
T 3tj1_A 457 SRTQIIFVASYLTSWL 472 (649)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8888888888877765
No 57
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=32.61 E-value=1.4e+02 Score=28.08 Aligned_cols=56 Identities=7% Similarity=0.027 Sum_probs=34.6
Q ss_pred CchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHhhhhcCCCC
Q 003141 314 FNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKNCQL 376 (844)
Q Consensus 314 FNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~~sleiVr~I~~~vK~k~~~v 376 (844)
+.|-+.|..++ + ..+..|..+|...|...=.. .+++..+..|..+.+.+|.+||.+
T Consensus 84 ~~Fl~el~~l~-~---~~~~~Vk~kil~li~~W~~~---f~~~~~l~~i~~~Y~~Lk~~G~~F 139 (140)
T 3ldz_A 84 RDFASEVSNVL-N---KGHPKVCEKLKALMVEWTDE---FKNDPQLSLISAMIKNLKEQGVTF 139 (140)
T ss_dssp HHHHHHHHHHH-H---HSCHHHHHHHHHHHHHHHHH---HTTCGGGTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHh-c---cCCHHHHHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHccCcC
Confidence 33544544433 3 35678888888877754222 123344567888888888888765
No 58
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=27.37 E-value=2.8e+02 Score=31.80 Aligned_cols=147 Identities=15% Similarity=0.129 Sum_probs=88.0
Q ss_pred HHHHhCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003141 202 MALLADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYK 281 (844)
Q Consensus 202 ~~I~edPe~ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~ 281 (844)
.-...-|+..=.+++.++++|++.|..||+-||-.|-.+=+| .+ ++|-+= -|
T Consensus 54 kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~-------------i~kiaD-------vL----- 105 (507)
T 3u0r_A 54 KFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---EN-------------LPRVAD-------IL----- 105 (507)
T ss_dssp HHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TC-------------HHHHHH-------HH-----
T ss_pred HHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hh-------------hhhHHH-------HH-----
Confidence 344678999999999999999999999999988766555333 11 222110 01
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCCccHHHH
Q 003141 282 AYLQKLIASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEA 361 (844)
Q Consensus 282 ~yLq~Le~l~k~~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~~slei 361 (844)
.|.|- +-++.=..+.-+++.+||...|. .-|+.+-..+...++.++..|+.-|..-+..-+ .+..+-|+
T Consensus 106 --~QlLq--tdd~~E~~~V~~sL~sllk~Dpk-----~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~--~~~l~~E~ 174 (507)
T 3u0r_A 106 --TQLLQ--TDDSAEFNLVNNALLSIFKMDAK-----GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLP--DEVLTKEV 174 (507)
T ss_dssp --HHHTT--CCCHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSC--TTTSCHHH
T ss_pred --HHHHh--ccchHHHHHHHHHHHHHHhcChH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcc--hhhccHHH
Confidence 12211 12222234445677778877764 444444444444578899999999987777642 34455555
Q ss_pred HHHHHHhhhhcCCCCCHHHHHHhhcc
Q 003141 362 VRLIANHVKVKNCQLHPDFVEVFMSL 387 (844)
Q Consensus 362 Vr~I~~~vK~k~~~v~p~vl~~fL~L 387 (844)
-+.|...++.-=-.|...=...|+.+
T Consensus 175 E~~i~~~ikK~L~DVT~~EF~L~m~l 200 (507)
T 3u0r_A 175 EELILTESKKVLEDVTGEEFVLFMKI 200 (507)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 55555444433245666555555544
No 59
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=27.06 E-value=2e+02 Score=25.52 Aligned_cols=87 Identities=10% Similarity=0.117 Sum_probs=57.1
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 003141 215 LKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQP 294 (844)
Q Consensus 215 Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~k~~ 294 (844)
+..|+.++.+.++.||..|+.+|..+ .+ . + .....+..|. ..++
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~-~~------------~--------~-------------a~~~L~~~L~--d~~~ 87 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNF-QD------------E--------R-------------AVEPLIKLLE--DDSG 87 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGG-CS------------H--------H-------------HHHHHHHHHH--HCCT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhc-CC------------H--------H-------------HHHHHHHHHc--CCCH
Confidence 46677778888888988888877654 11 0 0 0011112221 3456
Q ss_pred chHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 003141 295 VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKS 345 (844)
Q Consensus 295 ~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~ 345 (844)
.++..|+.++..+= ....+..++..|.+++..|+..++.+|..
T Consensus 88 ~VR~~A~~aL~~~~--------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 88 FVRSGAARSLEQIG--------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHHC--------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 67888888887763 13577888888889999999888887754
No 60
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=26.86 E-value=76 Score=29.86 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhc
Q 003141 300 VVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 350 (844)
Q Consensus 300 Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D 350 (844)
.+--+|+++.+.|. -...-+..|..+|+++++.+.-.++..|..+.+|=
T Consensus 25 ~ileicD~I~~~~~--~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNc 73 (140)
T 3ldz_A 25 LILDICDKVGQSRT--GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNC 73 (140)
T ss_dssp HHHHHHHHHTTSTT--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhc
Confidence 56679999999884 45689999999999999999988899998998883
No 61
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=26.85 E-value=63 Score=35.31 Aligned_cols=121 Identities=12% Similarity=0.190 Sum_probs=78.1
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003141 214 SLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQ 293 (844)
Q Consensus 214 ~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kvsKev~~lr~fE~~Ll~~Y~~yLq~Le~l~k~ 293 (844)
.+-.++.++..+|...++|..+.+..+-+. |.--| ..+ ..+.|+ | -...
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~i-Lv~-----Nsl~kD---------------------l--~~~N 117 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDVI-IVT-----SSLTKD---------------------M--TGKE 117 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCGG-GGH-----HHHHHH---------------------H--HSSC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHHH-HHH-----HHHHhh---------------------c--CCCc
Confidence 344566677888999999999998776332 11111 000 001111 1 1234
Q ss_pred cchHHHHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHhhhhcC
Q 003141 294 PVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRLIANHVKVKN 373 (844)
Q Consensus 294 ~~l~~~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~~~~G~~sleiVr~I~~~vK~k~ 373 (844)
+.++..|+++||.+...- .-..|...+...|.|+++.|++.++=++..|+..++ +.--..+..+..++..++
T Consensus 118 ~~iR~lALRtL~~I~~~~----m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p----e~v~~~~~~l~~ll~d~n 189 (355)
T 3tjz_B 118 DSYRGPAVRALCQITDST----MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF----DVVKRWVNEAQEAASSDN 189 (355)
T ss_dssp HHHHHHHHHHHHHHCCTT----THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH----HHHHTTHHHHHHHTTCSS
T ss_pred HhHHHHHHHHHhcCCCHH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH----HHHHHHHHHHHHHhcCCC
Confidence 567899999999996543 456899999999999999999999989989988763 221223444555555444
No 62
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=26.64 E-value=9.1e+02 Score=29.09 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHhCHHHhH-----HHHHHHHHHhhccChh---hHHHHHHHHHHHHhh-----hcCCCCC----CCC-
Q 003141 192 SKKCKLAELGMALLADPESNI-----KSLKEMLQIARDDNPS---ISKLGFLSLLAVFKD-----IIPGYRI----RLP- 253 (844)
Q Consensus 192 ~~kdkIAaL~~~I~edPe~ni-----~~Lk~L~~m~~~k~~~---vrkLAilSL~~VFkD-----IlP~YrI----R~l- 253 (844)
..+..++.+-..|-.+|+..- +.++.|+.+....... .+..|..+|..+.-. ++|+|.+ +|+
T Consensus 472 ~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv 551 (778)
T 3opb_A 472 NCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLF 551 (778)
T ss_dssp HHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHH
Confidence 455666666677777776543 3677788888766433 677888888776532 5678764 221
Q ss_pred ---c---hhh---------hhhhhhHHH-HH---HHHH-----HHHHHHHH--HHHHHHHHHhcCC--cchHHHHHHHHH
Q 003141 254 ---T---EKE---------LEMKVSKEV-KK---MRFY-----ESTLLSAY--KAYLQKLIASEKQ--PVFHQVVVRCIC 305 (844)
Q Consensus 254 ---t---e~E---------~~~kvsKev-~~---lr~f-----E~~Ll~~Y--~~yLq~Le~l~k~--~~l~~~Avkclc 305 (844)
. +.. .......+. +. +-.+ |+.=.+.- ..++..|+.+-.+ +.++..|+.|+|
T Consensus 552 ~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~ 631 (778)
T 3opb_A 552 ELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELIS 631 (778)
T ss_dssp HTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1 100 000001111 11 2222 11111112 2477778777544 357899999999
Q ss_pred HHhhcCCC------CchHH--H--HHHHHHHhhCCCcHHHHHHHHHHHHHHhhhc
Q 003141 306 NLLDAVPH------FNCCE--I--LLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 350 (844)
Q Consensus 306 ~LL~~~Ph------FNf~~--n--LL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D 350 (844)
.|.. .|+ ||+.+ + =+..+|..++..|..++..++.+|..+-..+
T Consensus 632 NL~~-~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~ 685 (778)
T 3opb_A 632 NMMS-HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI 685 (778)
T ss_dssp HHHT-SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHhC-CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 9996 443 34321 1 2889999999999999999999998885543
No 63
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=24.86 E-value=3.5e+02 Score=30.12 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=43.2
Q ss_pred cchHHHHHHHHHHHhhcCCCCch----HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhcc
Q 003141 294 PVFHQVVVRCICNLLDAVPHFNC----CEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEG 351 (844)
Q Consensus 294 ~~l~~~Avkclc~LL~~~PhFNf----~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D~ 351 (844)
...+..|+.++|.|......-+. ....+..+++.|.++|.++...|+++|..+|+...
T Consensus 391 ~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 391 FKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 34677788888888765432111 12457789999999999999999999999997643
No 64
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=22.26 E-value=1.8e+02 Score=28.25 Aligned_cols=49 Identities=8% Similarity=0.131 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhh
Q 003141 299 VVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTN 349 (844)
Q Consensus 299 ~Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~ 349 (844)
..+--+|+++.+.|. -....+..|..+|++++..|+-.++..|..+.+|
T Consensus 32 ~~ileicD~I~~~~~--~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkN 80 (171)
T 1juq_A 32 EYIIGFCDQINKELE--GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKN 80 (171)
T ss_dssp HHHHHHHHHHHHSTT--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 356689999999875 4568899999999999999999999999999998
No 65
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=22.10 E-value=1.2e+02 Score=34.10 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhcC---CCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhc
Q 003141 297 HQVVVRCICNLLDAV---PHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 350 (844)
Q Consensus 297 ~~~Avkclc~LL~~~---PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D 350 (844)
...|+.+++.|.... +.+..-..++..|+..|.+.+..|..-+|.+|..+....
T Consensus 226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~ 282 (529)
T 3tpo_A 226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 282 (529)
T ss_dssp HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhh
Confidence 445666777766543 344444678889999999999999999999999987653
No 66
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=20.59 E-value=1.5e+02 Score=28.67 Aligned_cols=82 Identities=9% Similarity=-0.006 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHhhc-CCCCc-----hHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHhhhccCCCCccHHHHHHH
Q 003141 292 KQPVFHQVVVRCICNLLDA-VPHFN-----CCEILLEVVVRNLGS-QDVVVRKLCCATIKSLFTNEGKHGGVATVEAVRL 364 (844)
Q Consensus 292 k~~~l~~~Avkclc~LL~~-~PhFN-----f~~nLL~~lV~kLg~-~~~~Va~~c~~al~~Lf~~D~~~~G~~sleiVr~ 364 (844)
+.|.....|+..+=.++.+ -++|- + ..+.-++..+.. .+..|..+|+..|...=.. ..+...+..|+.
T Consensus 64 ~n~~vql~AL~LLd~~vkNcG~~Fh~evas~--~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~---f~~~~~l~~i~~ 138 (163)
T 1x5b_A 64 KVPHVALQALTLLGACVANCGKIFHLEVCSR--DFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE---FQKDPQFSLISA 138 (163)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSH--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---TTTCSTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhH--HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH---hcCCcccHHHHH
Q ss_pred HHHhhhhcCCCCCH
Q 003141 365 IANHVKVKNCQLHP 378 (844)
Q Consensus 365 I~~~vK~k~~~v~p 378 (844)
+.+.+|.++|.+++
T Consensus 139 ~Y~~Lk~~G~~FP~ 152 (163)
T 1x5b_A 139 TIKSMKEEGITFPP 152 (163)
T ss_dssp HHHHHHTTTCCCCC
T ss_pred HHHHHHHcCCCCCC
No 67
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=20.27 E-value=1.9e+02 Score=27.51 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhc
Q 003141 300 VVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 350 (844)
Q Consensus 300 Avkclc~LL~~~PhFNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D 350 (844)
++--+|+++.+.| +-...-+..|..+|+++++.++-.++..|..+.+|=
T Consensus 21 ~~leicD~I~~~~--~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNC 69 (148)
T 1mhq_A 21 AIQNFCEQVNTDP--NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHC 69 (148)
T ss_dssp HHHHHHHHHHHSS--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc
Confidence 5668999999987 566789999999999999999999999999999983
No 68
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=20.14 E-value=1.2e+03 Score=28.33 Aligned_cols=137 Identities=12% Similarity=0.083 Sum_probs=73.8
Q ss_pred hCHHHhHHHHHHHHHHhhccChhhHHHHHHHHHHHHhhhcCCCCCCCCchhhhhhhh--hHHHHHHHHHHHHHHHHHHHH
Q 003141 206 ADPESNIKSLKEMLQIARDDNPSISKLGFLSLLAVFKDIIPGYRIRLPTEKELEMKV--SKEVKKMRFYESTLLSAYKAY 283 (844)
Q Consensus 206 edPe~ni~~Lk~L~~m~~~k~~~vrkLAilSL~~VFkDIlP~YrIR~lte~E~~~kv--sKev~~lr~fE~~Ll~~Y~~y 283 (844)
.-|..--..+.+|+.++...+.....+.++.++...-+=+-++++. .+..+. .+- =|+...-+. +-......
T Consensus 121 ~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~-~~~~~~-~r~~~lkd~m~~~~----~~~i~~~~ 194 (980)
T 3ibv_A 121 LYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVL-KTDVQI-QKDNLVKDAIRAND----MSDIVSFV 194 (980)
T ss_dssp HTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSC-CCHHHH-HHHHHHHHHHHHHT----HHHHHHHH
T ss_pred hCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccc-cCHHHH-hhhHHHHHHHHhcc----HHHHHHHH
Confidence 4466555678888888876554222333333333221222244442 232211 111 022221111 22223334
Q ss_pred HHHHHHh--cCCcchHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhhhc
Q 003141 284 LQKLIAS--EKQPVFHQVVVRCICNLLDAVPH-FNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNE 350 (844)
Q Consensus 284 Lq~Le~l--~k~~~l~~~Avkclc~LL~~~Ph-FNf~~nLL~~lV~kLg~~~~~Va~~c~~al~~Lf~~D 350 (844)
++.|..+ ...+.+...+++|+...+.--|- .=+.++++..+...|++ +.++..||+||..++..-
T Consensus 195 ~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 195 YEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcC
Confidence 4444443 23456778899999988874332 11225889999988886 678888999999988763
Done!