BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003142
(844 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|302144008|emb|CBI23113.3| unnamed protein product [Vitis vinifera]
Length = 807
Score = 1025 bits (2649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/804 (63%), Positives = 635/804 (78%), Gaps = 23/804 (2%)
Query: 45 KKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAI 104
+K V +++LRVLEWDKLCHSVSSFA TSLGRE+T QLWS++QTYQ+SLRLLDETNAA+
Sbjct: 22 QKPSVHHQTLRVLEWDKLCHSVSSFASTSLGRESTWAQLWSLDQTYQESLRLLDETNAAL 81
Query: 105 EMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIK 164
E+ KHG C++D + +D LVKSAI+ RR P+ NEA+AVVALLQ +ETLQL+L+AAIK
Sbjct: 82 EIHKHGGCTMDFSTIDAVLVKSAIQHARRMLPVDGNEAMAVVALLQLAETLQLNLKAAIK 141
Query: 165 EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
EDAD Y RFMP++++IM L +NRSL+K I QVVDEDGS+KDSAS ALKQSR QV+ LERK
Sbjct: 142 EDADWYKRFMPISEVIMGLVINRSLVKLIQQVVDEDGSVKDSASSALKQSRDQVRTLERK 201
Query: 225 LYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSVIEPLSAV 284
LYQLMD L+RN NE+ LEVS++ GR CI++GA+ + KGLLLSS SG+GS+IEPLSA+
Sbjct: 202 LYQLMDSLVRNNVNETSSLEVSNVDGRWCIKSGANLTNLKGLLLSSGSGVGSIIEPLSAI 261
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
PLNDELQ+ARA KAE DVLL LTEKMQ+DL++IEK+L+ +IQLDV+NARATY LSFGG
Sbjct: 262 PLNDELQKARALAAKAEADVLLKLTEKMQMDLEDIEKLLDSVIQLDVINARATYGLSFGG 321
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSS-----EREWTIYLPKAYHPLLLQQHKQKTQQAW 399
T P++FL ++ S T ++ +S +REWT++LPKAYHPLL+QQH++ Q+A
Sbjct: 322 TCPDLFLAENKNGSSTGAHLSGHGTSEASYPIKREWTLHLPKAYHPLLVQQHRENLQKAR 381
Query: 400 KDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLV 459
KD+ A +E RR+KL G K E D NLS EMQV+ LE + PVP+D FIA++TRVLV
Sbjct: 382 KDVSLAISEQRRKKLQGEKFNVKEETDINLSSLEMQVTRLEQSPPVPVDFFIAQRTRVLV 441
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
ITGPNTGGKTICLKTVGLA MMA+SGLH+L++E ++PWFD VFADIGDEQSLSQSLSTF
Sbjct: 442 ITGPNTGGKTICLKTVGLAAMMARSGLHVLAAEPVRIPWFDYVFADIGDEQSLSQSLSTF 501
Query: 520 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579
SGHLKQI +I +QST+QSLVLLDE+GAGTNPLEG ALGMSLLE+FAE+G+LLTIATTHH
Sbjct: 502 SGHLKQISDIKAQSTNQSLVLLDEVGAGTNPLEGAALGMSLLESFAETGALLTIATTHHS 561
Query: 580 ELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 639
ELKTLKYSND FENACMEFDEV LKPTYKILWG+PGRS+AINIAERLG+P V+ AR+
Sbjct: 562 ELKTLKYSNDAFENACMEFDEVNLKPTYKILWGIPGRSNAINIAERLGVPKKVLDKAREQ 621
Query: 640 YGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFR 699
YGAASAEINEVII+MERFK +F E V++AR++LMLSR+L++NLL T+RK++EH +QR+
Sbjct: 622 YGAASAEINEVIIDMERFKQEFQERVNDARYYLMLSRDLYENLLVTKRKLMEHGTNQRYG 681
Query: 700 KVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHV 759
K++++S+AAA+ARS L+HK+ +QLR SA++ T K+QH
Sbjct: 682 KMREVSEAAAVARS------------------LLHKKVRQLRSSATRPSQPTAADKSQHA 723
Query: 760 LTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVE 819
++ Q T D E P T+ S + Q ++ +P VGD+VHVSS GKK TV++VE
Sbjct: 724 SATSNQHTAADINERPTTSESKHPAKVAQQSSSEKKRVPKVGDMVHVSSLGKKATVLEVE 783
Query: 820 PSKEEIVVQVGNMKWIMKFTDIVT 843
SK ++VVQ GNMK +K TD+ T
Sbjct: 784 SSKGQLVVQAGNMKLKLKLTDVET 807
>gi|359490844|ref|XP_002269872.2| PREDICTED: mutS2 protein-like [Vitis vinifera]
Length = 791
Score = 984 bits (2544), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/805 (61%), Positives = 619/805 (76%), Gaps = 52/805 (6%)
Query: 45 KKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAI 104
+K V +++LRVLEWDKLCHSVSSFA TSLGRE+T QLWS++QTYQ+SLRLLDETNAA+
Sbjct: 33 QKPSVHHQTLRVLEWDKLCHSVSSFASTSLGRESTWAQLWSLDQTYQESLRLLDETNAAL 92
Query: 105 EMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIK 164
E+ KHG C++D + +D LVKSAI+ RR P+ NEA+AVVALLQ +ETLQL+L+AAIK
Sbjct: 93 EIHKHGGCTMDFSTIDAVLVKSAIQHARRMLPVDGNEAMAVVALLQLAETLQLNLKAAIK 152
Query: 165 EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
EDAD Y RFMP++++IM L +NRSL+K I QVVDEDGS+KDSAS ALKQSR QV+ LERK
Sbjct: 153 EDADWYKRFMPISEVIMGLVINRSLVKLIQQVVDEDGSVKDSASSALKQSRDQVRTLERK 212
Query: 225 LYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSVIEPLSAV 284
LYQLMD L+RN NE+ LEVS++ GR CI++GA+ + KGLLLSS SG+GS+IEPLSA+
Sbjct: 213 LYQLMDSLVRNNVNETSSLEVSNVDGRWCIKSGANLTNLKGLLLSSGSGVGSIIEPLSAI 272
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
PLNDELQ+ARA KAE DVLL LTEKMQ+DL++IEK+L+ +IQLDV+NARATY LSFGG
Sbjct: 273 PLNDELQKARALAAKAEADVLLKLTEKMQMDLEDIEKLLDSVIQLDVINARATYGLSFGG 332
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSS-----EREWTIYLPKAYHPLLLQQHKQKTQQAW 399
T P++FL ++ S T ++ +S +REWT++LPKAYHPLL+QQH++ Q+A
Sbjct: 333 TCPDLFLAENKNGSSTGAHLSGHGTSEASYPIKREWTLHLPKAYHPLLVQQHRENLQKAR 392
Query: 400 KDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVS-ALELAHPVPIDIFIARKTRVL 458
KD+ A + VS LE + PVP+D FIA++TRVL
Sbjct: 393 KDVSLA----------------------------ISVSYVLEQSPPVPVDFFIAQRTRVL 424
Query: 459 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 518
VITGPNTGGKTICLKTVGLA MMA+SGLH+L++E ++PWFD VFADIGDEQSLSQSLST
Sbjct: 425 VITGPNTGGKTICLKTVGLAAMMARSGLHVLAAEPVRIPWFDYVFADIGDEQSLSQSLST 484
Query: 519 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578
FSGHLKQI +I +QST+QSLVLLDE+GAGTNPLEG ALGMSLLE+FAE+G+LLTIATTHH
Sbjct: 485 FSGHLKQISDIKAQSTNQSLVLLDEVGAGTNPLEGAALGMSLLESFAETGALLTIATTHH 544
Query: 579 GELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
ELKTLKYSND FENACMEFDEV LKPTYKILWG+PGRS+AINIAERLG+P V+ AR+
Sbjct: 545 SELKTLKYSNDAFENACMEFDEVNLKPTYKILWGIPGRSNAINIAERLGVPKKVLDKARE 604
Query: 639 LYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRF 698
YGAASAEINEVII+MERFK +F E V++AR++LMLSR+L++NLL T+RK++EH +QR+
Sbjct: 605 QYGAASAEINEVIIDMERFKQEFQERVNDARYYLMLSRDLYENLLVTKRKLMEHGTNQRY 664
Query: 699 RKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQH 758
K++++S+AAA+AR SL+HK+ +QLR SA++ T K+QH
Sbjct: 665 GKMREVSEAAAVAR------------------SLLHKKVRQLRSSATRPSQPTAADKSQH 706
Query: 759 VLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKV 818
++ Q T D E P T+ S + Q ++ +P VGD+VHVSS GKK TV++V
Sbjct: 707 ASATSNQHTAADINERPTTSESKHPAKVAQQSSSEKKRVPKVGDMVHVSSLGKKATVLEV 766
Query: 819 EPSKEEIVVQVGNMKWIMKFTDIVT 843
E SK ++VVQ GNMK +K TD+ T
Sbjct: 767 ESSKGQLVVQAGNMKLKLKLTDVET 791
>gi|356498910|ref|XP_003518290.1| PREDICTED: mutS2 protein-like [Glycine max]
Length = 792
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/798 (60%), Positives = 605/798 (75%), Gaps = 54/798 (6%)
Query: 51 YESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHG 110
++SLRVLEWDKLC V+SFA TSLGR+A QLWS+NQT+++SL+LL+ETNAA+EM KHG
Sbjct: 39 HDSLRVLEWDKLCDLVASFATTSLGRQALKDQLWSLNQTFEESLKLLEETNAAVEMNKHG 98
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
+ L L +D LVK+AI+ RR+ P+ EA A+VALLQ +E +Q L+A IKED D +
Sbjct: 99 TLRLHLGHLDAMLVKTAIQHARRSIPVSGYEARAIVALLQCAEIVQGDLKAVIKEDKDWH 158
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
RFMPLT++IM+ +NRSLIK+I QVVDEDGSIKDSASPALKQ+R QVQ++ERK+ QL++
Sbjct: 159 NRFMPLTEVIMEFVINRSLIKAIEQVVDEDGSIKDSASPALKQARQQVQVIERKVQQLIE 218
Query: 231 MLIRNENNESLFLEVSSIHGRLCIRTGADQ-LSFKGLLLSSSSGIGSVIEPLSAVPLNDE 289
+IRNE +E+ LEV++I GR C+R + Q SFKGLLLSS SG+GS IEPLSAVPLNDE
Sbjct: 219 SIIRNEKSETSTLEVNNIDGRWCVRVDSGQKTSFKGLLLSSGSGVGSTIEPLSAVPLNDE 278
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
LQ+AR+ V KAE DVLLALT+KMQ+DLD+IEK LN +++LDV+NARATY LSFGG+SP+I
Sbjct: 279 LQRARSLVVKAEADVLLALTKKMQLDLDDIEKTLNSLVELDVINARATYGLSFGGSSPHI 338
Query: 350 FLPQDMKRSLTHEPVTSKVSS------SEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
FLP D S T E + + S+REWT+YL KAYHPLLLQ+HK+K
Sbjct: 339 FLP-DRSSSSTAEAFLPRSENLYGPLPSKREWTLYLLKAYHPLLLQRHKEKL-------- 389
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
RK +K+ NL+ S+ +AL+ A PVP+D +++KTRV+VITGP
Sbjct: 390 -----------------RKAKKNVNLATSD---AALDNAPPVPVDFLVSQKTRVIVITGP 429
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKTICLKTVGLA MMAKSGL++L+SE A++PWFDSVFADIGDEQSLSQSLSTFSGHL
Sbjct: 430 NTGGKTICLKTVGLAAMMAKSGLYVLASESAQIPWFDSVFADIGDEQSLSQSLSTFSGHL 489
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
KQI NI SQSTSQSLVLLDE+GAGTNPLEG ALGM+LLE+FA+ LLT+ATTHHGELKT
Sbjct: 490 KQISNIKSQSTSQSLVLLDEVGAGTNPLEGAALGMALLESFAQDSCLLTMATTHHGELKT 549
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
LKYS++ FENACMEFDEV LKPTYK+LWGVPGRS+AINIAERLGLP +VV AR LYG+A
Sbjct: 550 LKYSDEAFENACMEFDEVNLKPTYKVLWGVPGRSNAINIAERLGLPSVVVDTARMLYGSA 609
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
SAEI+EVI +MER K ++ E + EARH+L SR L+ +LL TRRKI+E+ + RF+K++
Sbjct: 610 SAEIDEVITDMERLKQEYQELLDEARHYLRHSRGLYNSLLNTRRKIIEYSTNLRFKKMRD 669
Query: 704 ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+S+AAA+ARS++HK ++L SA Q +Q + +S +L T K+Q V N
Sbjct: 670 VSEAAAMARSILHKKVRELDASAKQP-------SQNNKTISSSNLSAT--NKSQTV-AEN 719
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+ T DK S+S VK +S R ++ P VGD+VHVSS GK+ TV+KV+ SK
Sbjct: 720 KEPTIADK-------SASSVKVFNRS-RSDKSGPPKVGDMVHVSSLGKQVTVLKVDSSKG 771
Query: 824 EIVVQVGNMKWIMKFTDI 841
EIVVQ GNMK +K TDI
Sbjct: 772 EIVVQAGNMKLKLKLTDI 789
>gi|224118552|ref|XP_002317849.1| predicted protein [Populus trichocarpa]
gi|222858522|gb|EEE96069.1| predicted protein [Populus trichocarpa]
Length = 864
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/831 (58%), Positives = 595/831 (71%), Gaps = 80/831 (9%)
Query: 41 DSDDKKS--RVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLD 98
D + KKS Y SLR+LEWDKLC VSSFA TSLGREA QLWS+N TYQ SL LL
Sbjct: 81 DGNQKKSVNDARYSSLRILEWDKLCDLVSSFATTSLGREACKEQLWSLNHTYQHSLILLK 140
Query: 99 ETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRAS-PLRPNEALAVVALLQFSETLQL 157
ETNAA++M HG+C LD + ++L LVKS +R RR P+ NEA+AV A+L+ + LQL
Sbjct: 141 ETNAAVQMHNHGACRLDFSSINLLLVKSGLRNARRGGLPINANEAMAVAAILESAYFLQL 200
Query: 158 SLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQ 217
+L+AAIKEDAD Y RFMPL+Q+IM++ +N SL++ I QV+DEDGS+KDSAS ALK++R Q
Sbjct: 201 NLKAAIKEDADWYNRFMPLSQLIMEMVINVSLVRVIKQVIDEDGSVKDSASSALKRARDQ 260
Query: 218 VQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLLSSSSGIGS 276
VQ+LE+KL QLMD LIRNE E+ FLEVS+I GR CI +G QL SF GLLLSS SG G
Sbjct: 261 VQLLEKKLSQLMDSLIRNEMKETSFLEVSNIDGRWCINSGTGQLTSFNGLLLSSDSGTGR 320
Query: 277 VIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARA 336
+IEPLSAVPLNDELQQARASV KAE DVLL LTEKM+ DLD+IEK+ + +IQLDV+NARA
Sbjct: 321 IIEPLSAVPLNDELQQARASVAKAEADVLLMLTEKMKKDLDDIEKVSDSVIQLDVINARA 380
Query: 337 TYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSS------SEREWTIYLPKAYHPLLLQQ 390
TYSL F G SP++ L +++ S + E S+ + EREW +Y+PKAYHPL+LQQ
Sbjct: 381 TYSLFFRGASPSLNLSEELDGSFSTETYLSENETLMASFPKEREWLLYMPKAYHPLMLQQ 440
Query: 391 HKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIF 450
H+Q Q+A K+ G NA+ VSAL+ A PVP+D F
Sbjct: 441 HRQNVQKAKKE--------------GSNAS--------------DVSALDQARPVPVDFF 472
Query: 451 IARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQ 510
I+ KTRVL ITGPNTGGKTICLKTVGLA MMAKSGLH+LSSE ++PWFDSVFADIGDEQ
Sbjct: 473 ISHKTRVLTITGPNTGGKTICLKTVGLAAMMAKSGLHVLSSESVEIPWFDSVFADIGDEQ 532
Query: 511 SLSQSLSTFSGHLKQIG------NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
SLSQSLSTFSGHLKQI N ++ S ++ L +GAGTNPLEG ALGMSLLE+F
Sbjct: 533 SLSQSLSTFSGHLKQISIREFPWN-LTDSPCRTFDLNPRVGAGTNPLEGAALGMSLLESF 591
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVP---------- 614
A+SG+LLTIATTHHGELK+LKYSND FENACMEFDEV LKPTYKILWGVP
Sbjct: 592 ADSGALLTIATTHHGELKSLKYSNDAFENACMEFDEVNLKPTYKILWGVPVTILHNITAA 651
Query: 615 ----GRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
GRS+AINI+E+LGLP +VV NAR+L+GAASAEINEVII+MERFK E +HEARH
Sbjct: 652 VFPIGRSNAINISEKLGLPSVVVSNARELHGAASAEINEVIIDMERFKQDSQELLHEARH 711
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
LMLS+NLH+ L RRKI EH QR+RK+++IS+AA++ARS++HK +QL A+Q
Sbjct: 712 HLMLSKNLHEKLKLARRKIKEHGTEQRYRKMRQISEAASMARSILHKKVRQLRAHATQT- 770
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
+P+A Q + + TS+ + T K P + S+ V +I + P
Sbjct: 771 ---------FQPTADQ----------KQLSTSDSRFTAEAKNGRPTESMSTSVVEINKQP 811
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
TELP VGD+V VSS G+K TV++V+ SKEEI+VQ GNMK +K +I
Sbjct: 812 SA-MTELPEVGDMVQVSSLGRKATVLRVDRSKEEILVQAGNMKLKLKLAEI 861
>gi|449438987|ref|XP_004137269.1| PREDICTED: mutS2 protein-like [Cucumis sativus]
Length = 837
Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/829 (56%), Positives = 606/829 (73%), Gaps = 32/829 (3%)
Query: 26 KNRRGRL-FCSTVAVSDSDDKKSR-----VVYESLRVLEWDKLCHSVSSFARTSLGREAT 79
+NR L F + +S S+D + + +SLR LEWDKLC SV+SFARTSLGR+A
Sbjct: 28 RNRTASLHFSLSANISVSNDIRDNTTQHSIRLDSLRALEWDKLCDSVASFARTSLGRQAI 87
Query: 80 LTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRP 139
QLWS N TY++SLRLLDETNAA+EM KHG CSLDL+GV+L LVKSAI +R+ +
Sbjct: 88 KAQLWSSNWTYEESLRLLDETNAAVEMHKHGGCSLDLSGVNLHLVKSAIEHAQRSLAMDG 147
Query: 140 NEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDE 199
NEA+A+ ALLQF++ LQ +L+ AIKED D RFMPLT +IM + VN+SLIK I+ VDE
Sbjct: 148 NEAIAIAALLQFADMLQFNLKTAIKEDVDWSTRFMPLTNVIMGMVVNQSLIKLILNAVDE 207
Query: 200 DGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGAD 259
DGS+KDSAS AL++SR QV+ LE+KL QLMD L+R+ + + FLEV + GR CI++ D
Sbjct: 208 DGSVKDSASYALRESRDQVRKLEKKLSQLMDSLVRSAKSGTSFLEVEIVDGRWCIKSEGD 267
Query: 260 QL-SFKGLLLSSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDE 318
QL KGLLLSS +GIGS IEP+SAVPLNDELQQARASV KAEEDVL LTEK+++D ++
Sbjct: 268 QLMDVKGLLLSSDAGIGSFIEPISAVPLNDELQQARASVAKAEEDVLFVLTEKVKMDFED 327
Query: 319 IEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSS----ERE 374
I K++ II+LDVVNARA+Y LSFGGT PN+ L + S+ + ++ S + + E
Sbjct: 328 ISKLIGCIIELDVVNARASYGLSFGGTCPNLVLLEGCNSSIANVCLSGDQSEASHLKKNE 387
Query: 375 WTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEM 434
W +YL +HPLLLQQ+++ + A +D+++A E+ R K GGN + K ++ ++S +M
Sbjct: 388 WVLYLQNTHHPLLLQQYRENLKNAKRDVKNAFNEMGR-KPPGGNMSWKEKEVIDISLFKM 446
Query: 435 QVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYA 494
+V LE A PV +D I+R+ +VLVITGPNTGGKT+CLKT+GLA MMAKSGLH+L+SE
Sbjct: 447 KVDQLEQARPVSVDFSISRRIKVLVITGPNTGGKTVCLKTIGLAAMMAKSGLHVLASESV 506
Query: 495 KVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 554
++PWFDS+FADIGDEQSL+QSLSTFSGHL++I +I S STSQSLVLLDE+GAGTNPLEG
Sbjct: 507 QIPWFDSIFADIGDEQSLTQSLSTFSGHLRKISDIQSVSTSQSLVLLDEVGAGTNPLEGA 566
Query: 555 ALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVP 614
ALGMSLLE+FA+SG+ LTIATTHHGELKTLKYSN+ FENACMEFDEV LKPTYKILWG+P
Sbjct: 567 ALGMSLLESFAKSGAALTIATTHHGELKTLKYSNEVFENACMEFDEVNLKPTYKILWGIP 626
Query: 615 GRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLML 674
GRS+AINIAERLGLP VV +AR+LYGA SA+I+EVI +ME K ++ + + EA++ L
Sbjct: 627 GRSNAINIAERLGLPSSVVDDARELYGAGSAQIDEVITDMECIKKKYGDLLQEAQNNLTE 686
Query: 675 SRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVH 734
S+NL++ LL RR I+EH QR RKVQ++++AA ARS +H+ ++L S + S
Sbjct: 687 SKNLYEKLLLARRNIIEHGRRQRLRKVQEVANAATTARSNLHQKGRELRASTIEYTS--- 743
Query: 735 KRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASS-SVVKDIKQSPRVK 793
PSA + + N +TT K + A S DI Q P+ +
Sbjct: 744 -------PSAIDRMQRAGINSN--------NRTTAGKKDLMALRRQISSTSDISQ-PQSE 787
Query: 794 RTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
P VGD V+VSSFGKK TV+ VEPSK+E++V+VG++K +KFTDI+
Sbjct: 788 EPLFPTVGDTVYVSSFGKKATVLGVEPSKDEVIVRVGSIKLKLKFTDIM 836
>gi|334188381|ref|NP_200220.2| DNA mismatch repair protein MutS, type 2 [Arabidopsis thaliana]
gi|332009066|gb|AED96449.1| DNA mismatch repair protein MutS, type 2 [Arabidopsis thaliana]
Length = 796
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/832 (52%), Positives = 587/832 (70%), Gaps = 67/832 (8%)
Query: 22 AITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLT 81
+I N+NR S+ + + KS+ +SLRVLEWDKLC V+SFARTSLGREAT
Sbjct: 20 SIGNRNRVKLSLISSSSPTLVCHSKSKSQTDSLRVLEWDKLCDVVASFARTSLGREATKK 79
Query: 82 QLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNE 141
+LWS++Q++ +SL+LLDET+AAI+M +HGS LDL+ + +SLV+S IR +R LR ++
Sbjct: 80 KLWSLDQSFSESLKLLDETDAAIKMLEHGSFCLDLSSIHISLVESGIRHAKRRLSLRADQ 139
Query: 142 ALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDG 201
AL V +LL+F E LQL L+AAIK+D D Y RFMPL+++I+ +NRS +K + QV+D DG
Sbjct: 140 ALEVASLLRFFENLQLDLKAAIKQDGDWYKRFMPLSELIVHPVINRSFVKLVEQVIDPDG 199
Query: 202 SIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL 261
+IKDSAS AL+QSR +VQ LERKL QL+D +IR++ ++ + + I GR CI+ ++QL
Sbjct: 200 TIKDSASSALRQSRERVQTLERKLQQLLDAIIRSQKDDESVMLAAEIDGRWCIQMSSNQL 259
Query: 262 -SFKGLLLSSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIE 320
S GLLLSS SG G+ EP++AV +ND+LQ ARASV KAE ++L LTEKMQ L +IE
Sbjct: 260 TSVNGLLLSSGSGGGTAAEPIAAVSMNDDLQSARASVAKAEAEILSMLTEKMQDGLCQIE 319
Query: 321 KMLNGIIQLDVVNARATYSLSFGGTSPNIFLP-QDMKRSLT---HEP---VTSKVSSSER 373
+L+ IQLDV+NARATYS ++GG P+I+LP +D SL+ + P + S+ S++
Sbjct: 320 VVLSYSIQLDVINARATYSRAYGGAHPDIYLPPEDEVESLSAGENSPDINLPSEKPLSKK 379
Query: 374 EWTIYLPKAYHPLLLQQHKQ---KTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLS 430
EW +YLP+ YHPLLL QHK+ KT++ K ++A+T
Sbjct: 380 EWLLYLPRCYHPLLLYQHKKGIRKTRETVKFHKTADT----------------------- 416
Query: 431 PSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS 490
L A P+P D I++ TRVLVITGPNTGGKTICLK+VGLA MMAKSGL++L+
Sbjct: 417 -------VLSGAPPIPADFQISKGTRVLVITGPNTGGKTICLKSVGLAAMMAKSGLYVLA 469
Query: 491 SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 550
+E A++PWFD+++ADIGDEQSL QSLSTFSGHLKQI I+S STS+SLVLLDE+GAGTNP
Sbjct: 470 TESARIPWFDNIYADIGDEQSLLQSLSTFSGHLKQISEILSHSTSRSLVLLDEVGAGTNP 529
Query: 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKIL 610
LEG ALGM++LE+FAESGSLLT+ATTHHGELKTLKYSN FENACMEFD++ LKPTYKIL
Sbjct: 530 LEGAALGMAILESFAESGSLLTMATTHHGELKTLKYSNSAFENACMEFDDLNLKPTYKIL 589
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
WGVPGRS+AINIA+RLGLP ++++AR+LYG+ASAEINEVI++MER+K ++ ++E+R
Sbjct: 590 WGVPGRSNAINIADRLGLPCDIIESARELYGSASAEINEVILDMERYKQEYQRLLNESRV 649
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
++ LSR LH+NLL ++ I +H +R + Q+++ A ++ RS + ++ QQ SA +
Sbjct: 650 YIRLSRELHENLLTAQKNINDHSTKERRKMRQELTQAGSMTRSTLRRTLQQFRSSA--GK 707
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
S K A QL+ TKV +TT D E SSSVV+ + P
Sbjct: 708 SSQSKVATQLQ---------TKV------------KTTKD--EDNGIRSSSVVER-RPLP 743
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
++P VG V VSS GKK TV+KVE SK+EI+VQVG MK +K TD+V
Sbjct: 744 EAAAQKVPEVGSSVFVSSLGKKATVLKVEHSKKEILVQVGIMKMKVKLTDVV 795
>gi|222613119|gb|EEE51251.1| hypothetical protein OsJ_32115 [Oryza sativa Japonica Group]
Length = 845
Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/810 (49%), Positives = 557/810 (68%), Gaps = 41/810 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ-TYQDSLRLLDETNAAIEMQKHGS 111
SLR+LEW K+C +V+SFA T+ GRE T TQLW + +Y+ S RLL+ET AA+ +
Sbjct: 48 SLRLLEWGKVCDAVASFAGTAHGRETTKTQLWEVEDVSYEQSRRLLEETGAAVRLIDSAG 107
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+D +G+D +V+SAI V + ++ EA+A+V+L+ F E+LQ++++AA+K+D D +
Sbjct: 108 GGIDFSGLDTVMVESAIHGVSGGAVIKGQEAMAIVSLMLFVESLQVTIKAAMKQDEDSHE 167
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
R + LT+ I+ +N+SL+KSI V+D+DGSIKD+ASP L++ R QVQ+LE +LYQLMD
Sbjct: 168 RLISLTETILDADINKSLVKSIQDVIDDDGSIKDTASPELRRYREQVQVLESRLYQLMDK 227
Query: 232 LIRNENNES----LFLEVSSIHGRLCIRTGADQLS-FKGLLLSSSSGIGSVIEPLSAVPL 286
L+RN +NE+ LF EV ++GR CI+ D+ S F GLLLSS + GS++EP+ AVPL
Sbjct: 228 LVRNADNEASVSVLFHEVCIVNGRCCIKVTGDKSSPFDGLLLSSGTDAGSMVEPIVAVPL 287
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
NDELQQARA V KAE D L +T+K+ ++LD I +L ++LD V ARA YS+++ GT
Sbjct: 288 NDELQQARALVAKAELDALSKMTDKILLELDNIRILLQATVELDKVAARAKYSIAYDGTY 347
Query: 347 PNIFLPQDMKRSLTHEP--VTSKVSS---SEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
P+++LP + +++ S +SS S++ W + +P AYHPLLLQQH++ +A KD
Sbjct: 348 PDLYLPNFVNGTVSTATGGSISTISSAHLSKKAWKLCMPNAYHPLLLQQHQENLHRAKKD 407
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
+ SA E+RRR++YG + + + ++L +++VS +E PVP+D FIA T VLVIT
Sbjct: 408 VASATAEIRRRRIYGQDNVEEDQLASDLDLMKIRVSQMEKDRPVPVDFFIAEGTTVLVIT 467
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKTI LKTVGLA +MAK GL+IL+SE K+PWF++V+ADIGDEQSL+QSLSTFSG
Sbjct: 468 GPNTGGKTISLKTVGLASLMAKIGLYILASEPVKIPWFNAVYADIGDEQSLTQSLSTFSG 527
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
HLKQIG I + STSQSLVLLDE+GAGTNPLEG ALGMSLLE+FAE+GS LT+ATTHHGEL
Sbjct: 528 HLKQIGAIRAWSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAEAGSFLTLATTHHGEL 587
Query: 582 KTLKY---------SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIV 632
KTLKY SND FENACMEFDE LKPT++ILWG+PGRS+AINIAERLGLP +
Sbjct: 588 KTLKYRAHYIVHTFSNDLFENACMEFDEDNLKPTFRILWGIPGRSNAINIAERLGLPSDI 647
Query: 633 VQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEH 692
++++RQL G A AEIN +I++ME FK Q+ H+ EA++++M S+ LH NL ++ I++H
Sbjct: 648 IESSRQLLGTAGAEINALIMDMENFKQQYQHHLQEAQYYVMQSKELHNNLEVAQKNIIDH 707
Query: 693 CASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA-QQLRPSASQSLHCT 751
++QR RK + IS+ A +ARS++ K QQ SA R L ++A Q +P + T
Sbjct: 708 TSAQRKRKARVISEYAVMARSIIRKKFQQFRESAIAKRVLEEEKAVQNDKPERLKDPEPT 767
Query: 752 KVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGK 811
+ +N T + E +P VGDLV+V
Sbjct: 768 STPAVKKAQNTNISMATTTEGEDNG--------------------IPEVGDLVYVPKLKN 807
Query: 812 KGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ TV+K++ SK E+ VQ G MK +KF D+
Sbjct: 808 EATVVKIDSSKNEVQVQAGIMKLKLKFKDV 837
>gi|357147017|ref|XP_003574192.1| PREDICTED: LOW QUALITY PROTEIN: mutS2 protein-like [Brachypodium
distachyon]
Length = 833
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/807 (49%), Positives = 559/807 (69%), Gaps = 46/807 (5%)
Query: 56 VLEWDKLCHSVSSFARTSLGREATLTQLWSINQ-TYQDSLRLLDETNAAIEMQKHGSCSL 114
+LEW K+C +V+SFA T+ GREAT QLW + +Y+ S RLL ET AA+ + S
Sbjct: 45 LLEWGKVCRAVASFAGTAHGREATEKQLWGVEDVSYERSRRLLQETEAAVRLLGTSGGSF 104
Query: 115 DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFM 174
D +G+D V++AI+ V S ++ EA+AVV+L+ F E+LQ+++RAA+++D + + M
Sbjct: 105 DFSGLDTVTVEAAIQCVSGGSVIKGQEAMAVVSLMLFVESLQVTIRAAMRQDEESHNLLM 164
Query: 175 PLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIR 234
PLT+ I++ VN+SL+KSI ++D+DGS+KD+ASP L++ R QVQ LE +L QLMD LIR
Sbjct: 165 PLTETILEAVVNKSLVKSIQDIIDDDGSVKDTASPELRRYREQVQSLESRLCQLMDRLIR 224
Query: 235 NENNESLFLEVSSIHGRLCIR-TGADQLSFKGLLLS------SSSGIGSVIEPLSAVPLN 287
N ++E+ EVS ++GR CI+ TG LSF GLLLS S GS+IEP+ AVPLN
Sbjct: 225 NSDSEASLSEVSIVNGRCCIKVTGDKSLSFDGLLLSRCVYXRCGSDAGSMIEPIVAVPLN 284
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
DELQ ARA V +AE D L LT+K+ ++LD I+ +L I LD V ARA YS+++ GT P
Sbjct: 285 DELQGARALVARAELDALSKLTDKILLELDNIQILLQETITLDKVTARAKYSIAYDGTLP 344
Query: 348 NIFLPQ---DMKRSLTHEPVTSKVSSS--EREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
+++LP+ + + T PV++ S+ ++ W +++P A+HPLLLQQH++ ++ KD+
Sbjct: 345 DLYLPKFEHETVNTATDWPVSATSSAQLPKKPWKVFIPNAFHPLLLQQHQENLRRIKKDV 404
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
SA E+RRR++YG + A + + ++L + +VS LE HP+P+D I +T VLVITG
Sbjct: 405 ASATAEIRRRRIYGQDIAEEDQLASDLDSMKNRVSKLERNHPIPVDFMIGEETTVLVITG 464
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKTI LKTVGLA +MAK GL+IL+SE K+PWFD+V+ADIGDEQSL+QSLSTFSGH
Sbjct: 465 PNTGGKTISLKTVGLASLMAKIGLYILASEPVKIPWFDAVYADIGDEQSLTQSLSTFSGH 524
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
LKQIG I +QSTSQSLVLLDE+GAGTNPLEG ALGMSLLE+FAE+GS LT+ATTHHGELK
Sbjct: 525 LKQIGAIRAQSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAEAGSFLTLATTHHGELK 584
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642
TLKYSND FENAC+EFDE LKPT++ILWG+PGRS+AINIAERLGLP ++++AR L G
Sbjct: 585 TLKYSNDSFENACVEFDEENLKPTFRILWGIPGRSNAINIAERLGLPLDIIESARHLLGT 644
Query: 643 ASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQ 702
A AEIN +I++ME+FK ++ E + +A+H+LM SR LH NL ++ +++H +QR RK +
Sbjct: 645 AGAEINALIMDMEKFKQEYDEQLQQAQHYLMQSRELHNNLEVAQKNVMDHTIAQRKRKSR 704
Query: 703 KISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTS 762
+S+ A +ARS++HK QQ SA R L +RA
Sbjct: 705 VVSEYAVMARSIIHKKFQQFRESAIAQRVLEEERA------------------------- 739
Query: 763 NFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE-------LPNVGDLVHVSSFGKKGTV 815
++ ++V+ P +S+S +K + + TE +P VGDLV+V + TV
Sbjct: 740 -VEKAKSERVKGPEPSSTSAIKMAQNTNSSMATEANDEDGGIPEVGDLVYVPKLKNQATV 798
Query: 816 IKVEPSKEEIVVQVGNMKWIMKFTDIV 842
+K++ SK E+ +Q G MK +K D+V
Sbjct: 799 VKIDSSKNEVQIQAGMMKLKLKLKDVV 825
>gi|8809580|dbj|BAA97131.1| DNA mismatch repair protein MutS2-like [Arabidopsis thaliana]
Length = 795
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/851 (50%), Positives = 577/851 (67%), Gaps = 106/851 (12%)
Query: 22 AITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLT 81
+I N+NR S+ + + KS+ +SLRVLEWDKLC V+SFARTSLGREAT
Sbjct: 20 SIGNRNRVKLSLISSSSPTLVCHSKSKSQTDSLRVLEWDKLCDVVASFARTSLGREATKK 79
Query: 82 QLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNE 141
+LWS++Q++ +SL+LLDET+AAI+M +HGS LDL+ + +SLV+S IR +R LR ++
Sbjct: 80 KLWSLDQSFSESLKLLDETDAAIKMLEHGSFCLDLSSIHISLVESGIRHAKRRLSLRADQ 139
Query: 142 ALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDG 201
AL V +LL+F E LQL L+AAIK+D D Y RFMPL+++I+ +NRS +K + QV+D DG
Sbjct: 140 ALEVASLLRFFENLQLDLKAAIKQDGDWYKRFMPLSELIVHPVINRSFVKLVEQVIDPDG 199
Query: 202 SIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNE-NNESLFLE---VSSIHGRLCIRTG 257
+IKDSAS AL+QSR +VQ LERKL QL+D +IR++ ++ES+ ++ + I GR CI+
Sbjct: 200 TIKDSASSALRQSRERVQTLERKLQQLLDAIIRSQKDDESVMIKFQLAAEIDGRWCIQMS 259
Query: 258 ADQL-SFKGLLLSS---------------SSGIGSVIEPLSAVPLNDELQQARASVTKAE 301
++QL S GLLLSS SG G+ EP++AV +ND+LQ ARASV KAE
Sbjct: 260 SNQLTSVNGLLLSSVYFQVLSLEDNMCFSGSGGGTAAEPIAAVSMNDDLQSARASVAKAE 319
Query: 302 EDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLP-QDMKRSLT 360
++L LTEK +NARATYS ++GG P+I+LP +D SL+
Sbjct: 320 AEILSMLTEK--------------------INARATYSRAYGGAHPDIYLPPEDEVESLS 359
Query: 361 ---HEP---VTSKVSSSEREWTIYLPKAYHPLLLQQHKQ---KTQQAWKDLESANTELRR 411
+ P + S+ S++EW +YLP+ YHPLLL QHK+ KT++ K ++A+T
Sbjct: 360 AGENSPDINLPSEKPLSKKEWLLYLPRCYHPLLLYQHKKGIRKTRETVKFHKTADT---- 415
Query: 412 RKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTIC 471
L A P+P D I++ TRVLVITGPNTGGKTIC
Sbjct: 416 --------------------------VLSGAPPIPADFQISKGTRVLVITGPNTGGKTIC 449
Query: 472 LKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS 531
LK+VGLA MMAKSGL++L++E A++PWFD+++ADIGDEQSL QSLSTFSGHLKQI I+S
Sbjct: 450 LKSVGLAAMMAKSGLYVLATESARIPWFDNIYADIGDEQSLLQSLSTFSGHLKQISEILS 509
Query: 532 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591
STS+SLVLLDE+GAGTNPLEG ALGM++LE+FAESGSLLT+ATTHHGELKTLKYSN F
Sbjct: 510 HSTSRSLVLLDEVGAGTNPLEGAALGMAILESFAESGSLLTMATTHHGELKTLKYSNSAF 569
Query: 592 ENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI 651
ENACMEFD++ LKPTYKILWGVPGRS+AINIA+RLGLP ++++AR+LYG+ASAEINEVI
Sbjct: 570 ENACMEFDDLNLKPTYKILWGVPGRSNAINIADRLGLPCDIIESARELYGSASAEINEVI 629
Query: 652 IEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIA 711
++MER+K ++ ++E+R ++ LSR LH+NLL ++ I +H +R + Q+++ A ++
Sbjct: 630 LDMERYKQEYQRLLNESRVYIRLSRELHENLLTAQKNINDHSTKERRKMRQELTQAGSMT 689
Query: 712 RSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDK 771
RS + ++ QQ SA +S K A QL+ TKV +TT D
Sbjct: 690 RSTLRRTLQQFRSSA--GKSSQSKVATQLQ---------TKV------------KTTKD- 725
Query: 772 VEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGN 831
E SSSVV+ + P ++P VG V VSS GKK TV+KVE SK+EI+VQVG
Sbjct: 726 -EDNGIRSSSVVER-RPLPEAAAQKVPEVGSSVFVSSLGKKATVLKVEHSKKEILVQVGI 783
Query: 832 MKWIMKFTDIV 842
MK +K TD+V
Sbjct: 784 MKMKVKLTDVV 794
>gi|297796263|ref|XP_002866016.1| DNA mismatch repair muts family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297311851|gb|EFH42275.1| DNA mismatch repair muts family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 796
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/868 (49%), Positives = 577/868 (66%), Gaps = 108/868 (12%)
Query: 6 AFGDSISIPIFNTKSFAITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHS 65
AF ++ ++ I N S N+NR S+ + + KS+ +SLRVLEWDKLC
Sbjct: 5 AFCNNCALVIRN--SIGNRNRNRVNLSLISSSSPTLVCRSKSKSQTDSLRVLEWDKLCDV 62
Query: 66 VSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVK 125
V+SFARTSLGREAT +LWS++Q++ +SL+LLDET+AAI+M +HGS LDL+ + +SLV+
Sbjct: 63 VASFARTSLGREATKKKLWSLDQSFSESLKLLDETDAAIKMLEHGSFCLDLSSIHISLVE 122
Query: 126 SAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFV 185
S IR +R LR ++AL + +LL+F +TLQ L+AAIK+D D Y RFMPL+++IM +
Sbjct: 123 SGIRHAKRRLSLRADQALEIASLLRFFDTLQFDLKAAIKQDGDWYKRFMPLSELIMHPVI 182
Query: 186 NRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEV 245
NRS +K + QV+D DG+IKDSAS AL+QSR +VQ LERKL QL+D +IR++ ++ L
Sbjct: 183 NRSFVKLVEQVIDPDGTIKDSASSALRQSRERVQTLERKLQQLLDAIIRSQKDDESVLVA 242
Query: 246 SSIHGRLCIRTGADQL----------------------SFKGLLLSSSSGIGSVIEPLSA 283
+ I GR CI+ ++QL S +G + S SG G+V EP++A
Sbjct: 243 AEIDGRWCIQMSSNQLTSVNGLLLSSYASLSMIYFHILSLEGNMCFSGSGGGTVAEPIAA 302
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V +ND+LQ ARASV KAE ++L LTEK +NARATYS ++G
Sbjct: 303 VSMNDDLQSARASVAKAEAEILSMLTEK--------------------INARATYSRAYG 342
Query: 344 GTSPNIFLP-QDMKRSLT------HEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQ 396
G P+I+LP +D SL+ ++S+ S +EW +YLP+ YHPLLL QHK+ +
Sbjct: 343 GAHPDIYLPPEDGVESLSAGENSLQSNLSSEKSLPRKEWLLYLPRCYHPLLLYQHKKGIR 402
Query: 397 QAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTR 456
+ + ++ T DT LS + P+P D I++ TR
Sbjct: 403 KTRETIKFHKT-----------------ADTVLSGTP----------PIPADFQISKGTR 435
Query: 457 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSL 516
VLVITGPNTGGKTICLK+VGLA MMAKSGL++L++E A++PWFD+++ADIGDEQSL QSL
Sbjct: 436 VLVITGPNTGGKTICLKSVGLAAMMAKSGLYVLATESARIPWFDNIYADIGDEQSLLQSL 495
Query: 517 STFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 576
STFSGHLKQI I+S STS+SLVLLDE+GAGTNPLEG ALGM++LE+FAESGSLLT+ATT
Sbjct: 496 STFSGHLKQISEILSHSTSRSLVLLDEVGAGTNPLEGAALGMAILESFAESGSLLTMATT 555
Query: 577 HHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 636
HHGELKTLKYSN FENACMEFD++ LKPT+KILWGVPGRS+AINIAERLGLP ++++A
Sbjct: 556 HHGELKTLKYSNSAFENACMEFDDLNLKPTFKILWGVPGRSNAINIAERLGLPCDIIESA 615
Query: 637 RQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQ 696
R+LYG+ASAEINEVI++MER+K ++ ++E+R ++ LSR LH NLL ++ I +H +
Sbjct: 616 RELYGSASAEINEVILDMERYKQEYQRLLNESRVYIRLSRELHDNLLIAQKNINDHATKE 675
Query: 697 RFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKN 756
R + Q+++ A ++ RS + ++ QQ +S A+S K A QL+ TKV
Sbjct: 676 RRKMRQELTQAGSMTRSTLRRTLQQF--RSSAAQSSQSKVATQLQ---------TKV--- 721
Query: 757 QHVLTSNFQQTTVDKVEHPATASSSVV--KDIKQSPRVKRTELPNVGDLVHVSSFGKKGT 814
+TT D E SSSVV + I ++ K +P VG V VSS GKK T
Sbjct: 722 ---------ETTKD--EDSGIRSSSVVERRPISEAAAQK---VPEVGSSVFVSSLGKKAT 767
Query: 815 VIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
V+KVE SK+EI+VQVG MK +K TD+V
Sbjct: 768 VLKVEQSKKEILVQVGIMKMKVKLTDVV 795
>gi|242039141|ref|XP_002466965.1| hypothetical protein SORBIDRAFT_01g017480 [Sorghum bicolor]
gi|241920819|gb|EER93963.1| hypothetical protein SORBIDRAFT_01g017480 [Sorghum bicolor]
Length = 831
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/798 (50%), Positives = 557/798 (69%), Gaps = 36/798 (4%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ-TYQDSLRLLDETNAAIEMQKHGSCS 113
R+LEW K+C +V+SFA T+ GR+AT QLW + +Y+ S RLL ET AA+ + + +
Sbjct: 50 RLLEWGKVCDAVASFAGTAHGRDATKKQLWEVEDVSYEQSQRLLQETEAAVWLLDNAGGA 109
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+D +G+D ++SAI V + ++ EA+AV +L+ F E+LQ++++AAIK D R
Sbjct: 110 MDFSGLDTVAIESAIHCVSGGAVIKGLEAMAVASLMLFVESLQVNIKAAIKLDEGSRSRL 169
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
LT+ I+ +N+SL+KSI ++D+DGS+KD+ASP L++ R QVQ LE +LYQLMD L+
Sbjct: 170 TTLTETILDAVINKSLVKSIQDIIDDDGSVKDTASPELRRYRDQVQRLESRLYQLMDKLM 229
Query: 234 RNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLLSSSSGIGSVIEPLSAVPLNDELQQ 292
RN ++E+ EV ++GR CIRT D S F GLLLSS SG GS+IEP++A+PLNDELQ+
Sbjct: 230 RNADDEASLSEVCIVNGRCCIRTTTDNSSIFDGLLLSSGSGAGSMIEPIAAIPLNDELQE 289
Query: 293 ARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLP 352
+RA V KAE DVL LT+K+ +DLD I+ +L I+LD + ARA YS+++ GT P+++LP
Sbjct: 290 SRALVAKAELDVLSKLTDKILLDLDSIQNLLQETIKLDKIAARAKYSIAYDGTFPDLYLP 349
Query: 353 QDMKRSLTHEPVTS--KVSSSE---REWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
++T S ++SS++ + W +Y+P AYHPLLLQ+H++ +A +D+ SA
Sbjct: 350 NFENETVTSATCGSVEQISSAQLPKKAWKLYMPNAYHPLLLQRHQENIHRAKRDVASATA 409
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
E+RRR++YG + A + + ++L +++VS LE PVP+D +A +T VLVITGPNTGG
Sbjct: 410 EIRRRRIYGQDIA-EDQLASDLDSMKLRVSQLEKDQPVPVDFMVAEETTVLVITGPNTGG 468
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KTI LKTVGLA +MAK GL+IL+SE K+PWF++V+ADIGDEQSL+QSLSTFSGHLKQIG
Sbjct: 469 KTISLKTVGLASLMAKIGLYILASEPVKIPWFNAVYADIGDEQSLTQSLSTFSGHLKQIG 528
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
I ++STS+SLVLLDE+GAGTNPLEG ALGMSLLE+FA++GS LT+ATTHHGELKTLKYS
Sbjct: 529 AIRAESTSESLVLLDEVGAGTNPLEGAALGMSLLESFADAGSFLTLATTHHGELKTLKYS 588
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
N+ FENACMEFDE LKPT+KILWG+PGRS+AINIAERLGLP +V+++R L G A AEI
Sbjct: 589 NNSFENACMEFDEENLKPTFKILWGIPGRSNAINIAERLGLPLDIVESSRHLLGTAGAEI 648
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
N +I++MERFK ++ +H+ EA++ LM S+ LH NL ++ I++H ++QR RK + IS+
Sbjct: 649 NALIMDMERFKQEYQQHLQEAQYLLMQSKELHNNLELAQKNIVDHTSAQRKRKARVISEY 708
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHC----TKVGKNQHVLTSN 763
A +ARS++ K QQL SA R L ++A S + H + +GK Q++ T N
Sbjct: 709 AVMARSIIRKKFQQLQESAIAER-LKEEKAVNDAKSDTVKDHVLANTSAIGKTQNIDT-N 766
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
T D +P VGD V+V + TV+K++ SK+
Sbjct: 767 LGMATND----------------------DEGGVPEVGDSVYVPKLKNEATVVKIDLSKD 804
Query: 824 EIVVQVGNMKWIMKFTDI 841
E+ VQ G MK +K D+
Sbjct: 805 EVQVQAGMMKLKLKLKDV 822
>gi|218184860|gb|EEC67287.1| hypothetical protein OsI_34270 [Oryza sativa Indica Group]
Length = 787
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/782 (49%), Positives = 535/782 (68%), Gaps = 41/782 (5%)
Query: 81 TQLWSINQ-TYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRP 139
TQLW + +Y+ S RLL+ET AA+ + +D +G+D +V+SAI V + ++
Sbjct: 18 TQLWEVEDVSYEQSRRLLEETGAAVRLIDSAGGGIDFSGLDTVMVESAIHGVSGGAVIKG 77
Query: 140 NEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDE 199
EA+A+V+L+ F E+LQ++++AA+K+D D + R + LT+ I+ +N+SL+KSI V+D+
Sbjct: 78 QEAMAIVSLMLFVESLQVTIKAAMKQDEDSHERLISLTETILDADINKSLVKSIQDVIDD 137
Query: 200 DGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNES----LFLEVSSIHGRLCIR 255
DGSIKD+ASP L++ R QVQ+LE +LYQLMD L+RN +NE+ LF EV ++GR CI+
Sbjct: 138 DGSIKDTASPELRRYREQVQVLESRLYQLMDKLVRNADNEASVSVLFHEVCIVNGRCCIK 197
Query: 256 TGADQLS-FKGLLLSSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQV 314
D+ S F GLLLSS + GS++EP+ AVPLNDELQQARA V KAE D L +T+K+ +
Sbjct: 198 VTGDKSSPFDGLLLSSGTDAGSMVEPIVAVPLNDELQQARALVAKAELDALSKMTDKILL 257
Query: 315 DLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEP--VTSKVSS-- 370
+LD I +L ++LD V ARA YS+++ GT P+++LP + +++ S +SS
Sbjct: 258 ELDNIRILLQATVELDKVAARAKYSIAYDGTYPDLYLPNFVNGTVSTATGGSISTISSAH 317
Query: 371 -SEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNL 429
S++ W + +P AYHPLLLQQH++ +A KD+ SA E+RRR++YG + + + ++L
Sbjct: 318 LSKKAWKLCMPNAYHPLLLQQHQENLHRAKKDVASATAEIRRRRIYGQDNVEEDQLASDL 377
Query: 430 SPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
+++VS +E PVP+D FIA T VLVITGPNTGGKTI LKTVGLA +MAK GL+IL
Sbjct: 378 DLIKIRVSQMEKDRPVPVDFFIAEGTTVLVITGPNTGGKTISLKTVGLASLMAKIGLYIL 437
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+SE K+PWF++V+ADIGDEQSL+QSLSTFSGHLKQIG I + STSQSLVLLDE+GAGTN
Sbjct: 438 ASEPVKIPWFNAVYADIGDEQSLTQSLSTFSGHLKQIGAIRAWSTSQSLVLLDEVGAGTN 497
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY---------SNDFFENACMEFDE 600
PLEG ALGMSLLE+FAE+GS LT+ATTHHGELKTLKY SND FENACMEFDE
Sbjct: 498 PLEGAALGMSLLESFAEAGSFLTLATTHHGELKTLKYRAHYIVHTFSNDLFENACMEFDE 557
Query: 601 VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQ 660
LKPT++ILWG+PGRS+AINIAERLGLP +++++RQL G A AEIN +I++ME FK Q
Sbjct: 558 DNLKPTFRILWGIPGRSNAINIAERLGLPSDIIESSRQLLGTAGAEINALIMDMENFKQQ 617
Query: 661 FLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQ 720
+ H+ EA++++M S+ LH NL ++ I++H ++QR RK + IS+ A +ARS++ K Q
Sbjct: 618 YQHHLQEAQYYVMQSKELHNNLEVAQKNIIDHTSAQRKRKARVISEYAVMARSIIRKKFQ 677
Query: 721 QLCPSASQARSLVHKRA-QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATAS 779
Q SA R L ++A Q +P + T + +N T + E
Sbjct: 678 QFRESAIAKRVLEEEKAVQNDKPERLKDPEPTSTPAVKKAQNTNISMATTTEGEDNG--- 734
Query: 780 SSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFT 839
+P VGDLV+V + TV+K++ SK E+ VQ G MK +KF
Sbjct: 735 -----------------IPEVGDLVYVPKLKNEATVVKIDSSKNEVQVQAGIMKLKLKFK 777
Query: 840 DI 841
D+
Sbjct: 778 DV 779
>gi|413933872|gb|AFW68423.1| hypothetical protein ZEAMMB73_052095, partial [Zea mays]
Length = 859
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/836 (47%), Positives = 555/836 (66%), Gaps = 80/836 (9%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ-TYQDSLRLLDETNAAIEMQKHGSCS 113
R+LEW K+C +V+SFA T+ GR+AT QLW + +Y+ S LL ET AA+ + + +
Sbjct: 50 RLLEWGKVCDAVASFAGTAHGRDATTKQLWEVEDVSYEQSQMLLQETEAAVLLLDNAGGA 109
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+D +G+D ++SAI V + ++ EA+AV +L+ F E+LQ++++AA+K D R
Sbjct: 110 MDFSGLDTVAIESAIHSVSGGAVIKGLEAMAVTSLMMFVESLQVNIKAAMKLDEGSCSRL 169
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
LT+ I+ +N+SL+KSI +VD+DGS+KD+ASP L++ R QVQ LE +LYQLMD L+
Sbjct: 170 TTLTETILDAVINKSLVKSIQDIVDDDGSVKDTASPELRRYREQVQRLENRLYQLMDKLM 229
Query: 234 RNENNESLFLEVSSIHGRLCIRTGADQLSF-KGLLLSSSSGIGSVIEPLSAVPLNDELQQ 292
RN ++E+ EV ++GR CIRT D SF GLLLSS S GS+IEP+ AVPLNDELQ+
Sbjct: 230 RNADDEASLSEVCIVNGRCCIRTTMDNSSFFDGLLLSSRSDAGSMIEPIVAVPLNDELQE 289
Query: 293 ARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLP 352
+RA V KAE DVL LT+K+++DLD I+ +L I+LD + ARA YS+++ GT P+++LP
Sbjct: 290 SRALVAKAELDVLSKLTDKIRLDLDSIQNLLQETIKLDKIAARAKYSIAYDGTFPDLYLP 349
Query: 353 QDMKRSLTHEPVTS-------KVSSSE---REWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
+ +E VTS ++SS++ + W +Y+P AYHPLLLQ+H++ +A +D+
Sbjct: 350 -----NFENETVTSATGGSIKQISSAQLPKKAWKLYMPNAYHPLLLQRHQENIHRAKRDV 404
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
SA E+RRR++YG + A + + ++L +++VS LE PVP+D IA +T VLVITG
Sbjct: 405 ASATAEIRRRRIYGQDIAEEDQLASDLDSMKLRVSQLEKDQPVPVDFMIAEETTVLVITG 464
Query: 463 PNTGGKTICLKTVGLAVMMAKS------------------------GLHILSSEYAKVPW 498
PNTGGKTI LKTVGLA +MAK GL+IL+SE K+PW
Sbjct: 465 PNTGGKTISLKTVGLASLMAKIVAKLAAVVTVVVSCRLLVADGATLGLYILASEPVKIPW 524
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
F++V+ADIGDEQSL+QSLSTFSGHLKQIG I ++STS+SLVLLDE+GAGTNPLEG ALGM
Sbjct: 525 FNAVYADIGDEQSLTQSLSTFSGHLKQIGAIRAESTSESLVLLDEVGAGTNPLEGAALGM 584
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYS------NDFFENACMEFDEVKLKPTYKILWG 612
SLLE+FAE+GS LT+ATTHHGELKTLKY N+ FENACMEFDE LKPT+KILWG
Sbjct: 585 SLLESFAEAGSFLTLATTHHGELKTLKYRLHFFLHNNSFENACMEFDEENLKPTFKILWG 644
Query: 613 VPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFL 672
+PGRS+AINI ERLGLP +V+++R+L G A AEIN +I++MER K ++ +H+ EA++ L
Sbjct: 645 IPGRSNAINITERLGLPLDIVESSRRLLGTAGAEINALIMDMERLKQEYQQHLQEAQYLL 704
Query: 673 MLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSL 732
M S+ LH NL ++ I++H ++QR RK + IS+ A +ARS++ K QQ SA R
Sbjct: 705 MQSKELHNNLELAQKSIVDHTSAQRKRKARVISEYAVMARSIIRKKFQQFQESAIAER-- 762
Query: 733 VHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ---- 788
V + + + S D+V+ P A++S + +I+
Sbjct: 763 VKEEENAVNDAKS------------------------DRVKDPMPANTSAIGNIQNIDTS 798
Query: 789 ---SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ E+P VGD V+V + TV+K++ SK E+ VQ G MK +K D+
Sbjct: 799 LGMTANDDEDEVPEVGDSVYVPKLKNEATVVKIDSSKNEVQVQAGMMKLKLKLKDV 854
>gi|22267591|gb|AAM94926.1| putative DNA mismatch repair protein [Oryza sativa Japonica Group]
Length = 810
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/810 (47%), Positives = 530/810 (65%), Gaps = 76/810 (9%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ-TYQDSLRLLDETNAAIEMQKHGS 111
SLR+LEW K+C +V+SFA T+ GRE T TQLW + +Y+ S RLL+ET AA+ +
Sbjct: 48 SLRLLEWGKVCDAVASFAGTAHGRETTKTQLWEVEDVSYEQSRRLLEETGAAVRLIDSAG 107
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+D +G+D +V+SAI V + ++ EA+A+V+L+ F E+LQ+ DAD
Sbjct: 108 GGIDFSGLDTVMVESAIHGVSGGAVIKGQEAMAIVSLMLFVESLQIL-------DAD--- 157
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+N+SL+KSI SP L++ R QVQ+LE +LYQLMD
Sbjct: 158 -------------INKSLVKSIQD------------SPELRRYREQVQVLESRLYQLMDK 192
Query: 232 LIRNENNES----LFLEVSSIHGRLCIRTGADQLS-FKGLLLSSSSGIGSVIEPLSAVPL 286
L+RN +NE+ LF EV ++GR CI+ D+ S F GLLLSS + GS++EP+ AVPL
Sbjct: 193 LVRNADNEASVSVLFHEVCIVNGRCCIKVTGDKSSPFDGLLLSSGTDAGSMVEPIVAVPL 252
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
NDELQQARA V KAE D L +T+K+ ++LD I +L ++LD V ARA YS+++ GT
Sbjct: 253 NDELQQARALVAKAELDALSKMTDKILLELDNIRILLQATVELDKVAARAKYSIAYDGTY 312
Query: 347 PNIFLPQDMKRSLTHEP--VTSKVSS---SEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
P+++LP + +++ S +SS S++ W + +P AYHPLLLQQH++ +A KD
Sbjct: 313 PDLYLPNFVNGTVSTATGGSISTISSAHLSKKAWKLCMPNAYHPLLLQQHQENLHRAKKD 372
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
+ SA E+RRR++YG + + + ++L +++VS +E PVP+D FIA T VLVIT
Sbjct: 373 VASATAEIRRRRIYGQDNVEEDQLASDLDLMKIRVSQMEKDRPVPVDFFIAEGTTVLVIT 432
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKTI LKTVGLA +MAK GL+IL+SE K+PWF++V+ADIGDEQSL+QSLSTFSG
Sbjct: 433 GPNTGGKTISLKTVGLASLMAKIGLYILASEPVKIPWFNAVYADIGDEQSLTQSLSTFSG 492
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
HLKQIG I + STSQSLVLLDE+GAGTNPLEG ALGMSLLE+FAE+GS LT+ATTHHGEL
Sbjct: 493 HLKQIGAIRAWSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAEAGSFLTLATTHHGEL 552
Query: 582 KTLKY---------SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIV 632
KTLKY SND FENACMEFDE LKPT++ILWG+PGRS+AINIAERLGLP +
Sbjct: 553 KTLKYRAHYIVHTFSNDLFENACMEFDEDNLKPTFRILWGIPGRSNAINIAERLGLPSDI 612
Query: 633 VQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEH 692
++++RQL G A AEIN +I++ME FK Q+ H+ EA++++M S+ LH NL ++ I++H
Sbjct: 613 IESSRQLLGTAGAEINALIMDMENFKQQYQHHLQEAQYYVMQSKELHNNLEVAQKNIIDH 672
Query: 693 CASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA-QQLRPSASQSLHCT 751
++QR RK + IS+ A +ARS++ K QQ SA R L ++A Q +P + T
Sbjct: 673 TSAQRKRKARVISEYAVMARSIIRKKFQQFRESAIAKRVLEEEKAVQNDKPERLKDPEPT 732
Query: 752 KVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGK 811
+ +N T + E +P VGDLV+V
Sbjct: 733 STPAVKKAQNTNISMATTTEGEDNG--------------------IPEVGDLVYVPKLKN 772
Query: 812 KGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ TV+K++ SK E+ VQ G MK +KF D+
Sbjct: 773 EATVVKIDSSKNEVQVQAGIMKLKLKFKDV 802
>gi|413933876|gb|AFW68427.1| hypothetical protein ZEAMMB73_052095 [Zea mays]
Length = 864
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/839 (46%), Positives = 540/839 (64%), Gaps = 85/839 (10%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ-TYQDSLRLLDETNAAIEMQKHGSCS 113
R+LEW K+C +V+SFA T+ GR+AT QLW + +Y+ S LL ET AA+ + + +
Sbjct: 50 RLLEWGKVCDAVASFAGTAHGRDATTKQLWEVEDVSYEQSQMLLQETEAAVLLLDNAGGA 109
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+D +G+D ++SAI V + ++ EA+AV +L+ F E+LQ++++AA+K D R
Sbjct: 110 MDFSGLDT--IESAIHSVSGGAVIKGLEAMAVTSLMMFVESLQVNIKAAMKLDEGSCSRL 167
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
LT+ I+ +N+SL+KSI +VD+DGS+KD+ASP L++ R QVQ LE +LYQLMD L+
Sbjct: 168 TTLTETILDAVINKSLVKSIQDIVDDDGSVKDTASPELRRYREQVQRLENRLYQLMDKLM 227
Query: 234 RNENNESLFLEVSSIHGRLCIRTGADQLSF-KGLLLSSSSGIGSVIEPLSAVPLNDELQQ 292
RN ++E+ EV ++GR CIRT D SF GLLLSS S GS+IEP+ AVPLNDELQ+
Sbjct: 228 RNADDEASLSEVCIVNGRCCIRTTMDNSSFFDGLLLSSRSDAGSMIEPIVAVPLNDELQE 287
Query: 293 ARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLP 352
+RA V KAE DVL LT+K+++DLD I+ +L I+LD + ARA YS+++ GT P+++LP
Sbjct: 288 SRALVAKAELDVLSKLTDKIRLDLDSIQNLLQETIKLDKIAARAKYSIAYDGTFPDLYLP 347
Query: 353 QDMKRSLTHEPVTSKVSSS----------EREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
+ +E VTS S ++ W +Y+P AYHPLLLQ+H++ +A +D+
Sbjct: 348 -----NFENETVTSATGGSIKQISSAQLPKKAWKLYMPNAYHPLLLQRHQENIHRAKRDV 402
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
SA E+RRR++YG + A + + ++L +++VS LE PVP+D IA +T VLVITG
Sbjct: 403 ASATAEIRRRRIYGQDIAEEDQLASDLDSMKLRVSQLEKDQPVPVDFMIAEETTVLVITG 462
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKTI LKTVGLA +MAK GL+IL+SE K+PWF++V+ADIGDEQSL+QSLSTFSGH
Sbjct: 463 PNTGGKTISLKTVGLASLMAKIGLYILASEPVKIPWFNAVYADIGDEQSLTQSLSTFSGH 522
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
LKQIG I ++STS+SLVLLDE+GAGTNPLEG ALGMSLLE+FAE+GS LT+ATTHHGELK
Sbjct: 523 LKQIGAIRAESTSESLVLLDEVGAGTNPLEGAALGMSLLESFAEAGSFLTLATTHHGELK 582
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642
TLKYSN+ FENACMEFDE LKPT+KILWG+PGRS+AINI ERLGLP +V+++R+L G
Sbjct: 583 TLKYSNNSFENACMEFDEENLKPTFKILWGIPGRSNAINITERLGLPLDIVESSRRLLGT 642
Query: 643 ASAEINEVI--------------------------------IEMERFKTQF-LEHVHEAR 669
A AEIN V ++ KTQ +
Sbjct: 643 AGAEINAVCFFGHFSVLRTCTWFCCPKYLVMILSSRSSSSAVDNGHGKTQTRISTTSSGG 702
Query: 670 HFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQA 729
S+ LH NL ++ I++H ++QR RK + IS+ A +ARS++ K QQ SA
Sbjct: 703 TISSYSKELHNNLELAQKSIVDHTSAQRKRKARVISEYAVMARSIIRKKFQQFQESAIAE 762
Query: 730 RSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ- 788
R V + + + S D+V+ P A++S + +I+
Sbjct: 763 R--VKEEENAVNDAKS------------------------DRVKDPMPANTSAIGNIQNI 796
Query: 789 ------SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ E+P VGD V+V + TV+K++ SK E+ VQ G MK +K D+
Sbjct: 797 DTSLGMTANDDEDEVPEVGDSVYVPKLKNEATVVKIDSSKNEVQVQAGMMKLKLKLKDV 855
>gi|293336740|ref|NP_001168465.1| uncharacterized protein LOC100382240 [Zea mays]
gi|223948449|gb|ACN28308.1| unknown [Zea mays]
Length = 689
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/645 (53%), Positives = 471/645 (73%), Gaps = 21/645 (3%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ-TYQDSLRLLDETNAAIEMQKHGSCS 113
R+LEW K+C +V+SFA T+ GR+AT QLW + +Y+ S LL ET AA+ + + +
Sbjct: 50 RLLEWGKVCDAVASFAGTAHGRDATTKQLWEVEDVSYEQSQMLLQETEAAVLLLDNAGGA 109
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+D +G+D ++SAI V + ++ EA+AV +L+ F E+LQ++++AA+K D R
Sbjct: 110 MDFSGLDTVAIESAIHSVSGGAVIKGLEAMAVTSLMMFVESLQVNIKAAMKLDEGSCSRL 169
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
LT+ I+ +N+SL+KSI +VD+DGS+KD+ASP L++ R QVQ LE +LYQLMD L+
Sbjct: 170 TTLTETILDAVINKSLVKSIQDIVDDDGSVKDTASPELRRYREQVQRLENRLYQLMDKLM 229
Query: 234 RNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSVIEPLSAVPLNDELQQA 293
RN ++E+ EV ++GR CIRT D SF LL S S GS+IEP+ AVPLNDELQ++
Sbjct: 230 RNADDEASLSEVCIVNGRCCIRTTMDNSSFFDGLLLSRSDAGSMIEPIVAVPLNDELQES 289
Query: 294 RASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQ 353
RA V KAE DVL LT+K+++DLD I+ +L I+LD + ARA YS+++ GT P+++LP
Sbjct: 290 RALVAKAELDVLSKLTDKIRLDLDSIQNLLQETIKLDKIAARAKYSIAYDGTFPDLYLP- 348
Query: 354 DMKRSLTHEPVTSKVSSS----------EREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
+ +E VTS S ++ W +Y+P AYHPLLLQ+H++ +A +D+
Sbjct: 349 ----NFENETVTSATGGSIKQISSAQLPKKAWKLYMPNAYHPLLLQRHQENIHRAKRDVA 404
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
SA E+RRR++YG + A + + ++L +++VS LE PVP+D IA +T VLVITGP
Sbjct: 405 SATAEIRRRRIYGQDIAEEDQLASDLDSMKLRVSQLEKDQPVPVDFMIAEETTVLVITGP 464
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKTI LKTVGLA +MAK GL+IL+SE K+PWF++V+ADIGDEQSL+QSLSTFSGHL
Sbjct: 465 NTGGKTISLKTVGLASLMAKIGLYILASEPVKIPWFNAVYADIGDEQSLTQSLSTFSGHL 524
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
KQIG I ++STS+SLVLLDE+GAGTNPLEG ALGMSLLE+FAE+GS LT+ATTHHGELKT
Sbjct: 525 KQIGAIRAESTSESLVLLDEVGAGTNPLEGAALGMSLLESFAEAGSFLTLATTHHGELKT 584
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
LKYSN+ FENACMEFDE LKPT+KILWG+PGRS+AINI ERLGLP +V+++R+L G A
Sbjct: 585 LKYSNNSFENACMEFDEENLKPTFKILWGIPGRSNAINITERLGLPLDIVESSRRLLGTA 644
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFL-----MLSRNLHKNLL 683
AEIN +I++MER K ++ +H+ EA++ L + + N HK L
Sbjct: 645 GAEINALIMDMERLKQEYQQHLQEAQYLLIPRSFITTWNWHKRAL 689
>gi|357490381|ref|XP_003615478.1| MutS2 protein [Medicago truncatula]
gi|355516813|gb|AES98436.1| MutS2 protein [Medicago truncatula]
Length = 574
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/573 (62%), Positives = 427/573 (74%), Gaps = 56/573 (9%)
Query: 51 YESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHG 110
++SLRVLEWDKL VSSFA TSLGR A QLWS NQTY++SL+LL+ETNAA+EM KHG
Sbjct: 46 HDSLRVLEWDKLSDLVSSFATTSLGRHALKDQLWSQNQTYEESLKLLEETNAAVEMHKHG 105
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SC L +D LV++AI+ RR + EA AV++LLQ ++TLQ L+A IK+D D Y
Sbjct: 106 SCRLHFGHIDAMLVQTAIQSARRTILVTGYEANAVLSLLQSADTLQGDLKATIKQDKDWY 165
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
RFMPLT++IM L +NRSL+K I QV+DEDGSIKDSAS L++SR QVQ+LERK+ QLM+
Sbjct: 166 SRFMPLTEVIMDLVINRSLVKEIEQVIDEDGSIKDSASSELRKSRQQVQVLERKVQQLME 225
Query: 231 MLIRNENNESLFLEVSSIHGRLCIRTGADQ-LSFKGLLLSSSSGIGSVIEPLSAVPLNDE 289
LIR+E +E+ LEV++I GR CIRT + Q SFKGLLLSSSSG+GS IEPLSAVPLNDE
Sbjct: 226 SLIRSERSETSILEVNNIDGRWCIRTDSGQKTSFKGLLLSSSSGVGSTIEPLSAVPLNDE 285
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
LQ+AR+ V KAE DVLLALT K+Q+D+D+IEK+L+ ++QLDV+NARATY LSFGG++PNI
Sbjct: 286 LQRARSLVAKAEADVLLALTRKIQLDVDDIEKILDSLVQLDVINARATYGLSFGGSNPNI 345
Query: 350 FLPQDMKRSLTHEPVTSKVS-----SSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
FLP D S T E +T + REW +YLPKAYHPLLLQ H+
Sbjct: 346 FLP-DRNNSSTAESLTRNDTLNGPLPDNREWILYLPKAYHPLLLQSHR------------ 392
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHP--VPIDIFIARKTRVLVITG 462
AN +K ++D N+ VSAL+ A P VP+D ++ KTRV+VITG
Sbjct: 393 ANL-------------KKVKEDVNI------VSALDKAQPQPVPVDFLVSNKTRVIVITG 433
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKTICLKTVGLA MMAKSGL++L+SE ++PWFDSVFADIGDEQSLSQSLSTFSGH
Sbjct: 434 PNTGGKTICLKTVGLAAMMAKSGLYVLASESVQIPWFDSVFADIGDEQSLSQSLSTFSGH 493
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
LKQI +GAGTNPLEG ALGMSLLE+ A G LLTIATTHHGELK
Sbjct: 494 LKQIS----------------VGAGTNPLEGAALGMSLLESLAHGGCLLTIATTHHGELK 537
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPG 615
TLKYSN+ FENACMEFDEV LKPTYK+LWG+PG
Sbjct: 538 TLKYSNEAFENACMEFDEVNLKPTYKVLWGIPG 570
>gi|110289380|gb|AAP54555.2| MutS domain V family protein, expressed [Oryza sativa Japonica
Group]
Length = 653
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/641 (52%), Positives = 450/641 (70%), Gaps = 55/641 (8%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ-TYQDSLRLLDETNAAIEMQKHGS 111
SLR+LEW K+C +V+SFA T+ GRE T TQLW + +Y+ S RLL+ET AA+ +
Sbjct: 48 SLRLLEWGKVCDAVASFAGTAHGRETTKTQLWEVEDVSYEQSRRLLEETGAAVRLIDSAG 107
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+D +G+D +V+SAI V + ++ EA+A+V+L+ F E+LQ+ DAD
Sbjct: 108 GGIDFSGLDTVMVESAIHGVSGGAVIKGQEAMAIVSLMLFVESLQIL-------DAD--- 157
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+N+SL+KSI SP L++ R QVQ+LE +LYQLMD
Sbjct: 158 -------------INKSLVKSIQD------------SPELRRYREQVQVLESRLYQLMDK 192
Query: 232 LIRNENNES----LFLEVSSIHGRLCIRTGADQLS-FKGLLLSSSSGIGSVIEPLSAVPL 286
L+RN +NE+ LF EV ++GR CI+ D+ S F GLLLSS + GS++EP+ AVPL
Sbjct: 193 LVRNADNEASVSVLFHEVCIVNGRCCIKVTGDKSSPFDGLLLSSGTDAGSMVEPIVAVPL 252
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
NDELQQARA V KAE D L +T+K+ ++LD I +L ++LD V ARA YS+++ GT
Sbjct: 253 NDELQQARALVAKAELDALSKMTDKILLELDNIRILLQATVELDKVAARAKYSIAYDGTY 312
Query: 347 PNIFLPQDMKRSLTHEP--VTSKVSS---SEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
P+++LP + +++ S +SS S++ W + +P AYHPLLLQQH++ +A KD
Sbjct: 313 PDLYLPNFVNGTVSTATGGSISTISSAHLSKKAWKLCMPNAYHPLLLQQHQENLHRAKKD 372
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
+ SA E+RRR++YG + + + ++L +++VS +E PVP+D FIA T VLVIT
Sbjct: 373 VASATAEIRRRRIYGQDNVEEDQLASDLDLMKIRVSQMEKDRPVPVDFFIAEGTTVLVIT 432
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKTI LKTVGLA +MAK GL+IL+SE K+PWF++V+ADIGDEQSL+QSLSTFSG
Sbjct: 433 GPNTGGKTISLKTVGLASLMAKIGLYILASEPVKIPWFNAVYADIGDEQSLTQSLSTFSG 492
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
HLKQIG I + STSQSLVLLDE+GAGTNPLEG ALGMSLLE+FAE+GS LT+ATTHHGEL
Sbjct: 493 HLKQIGAIRAWSTSQSLVLLDEVGAGTNPLEGAALGMSLLESFAEAGSFLTLATTHHGEL 552
Query: 582 KTLKY---------SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIV 632
KTLKY SND FENACMEFDE LKPT++ILWG+PGRS+AINIAERLGLP +
Sbjct: 553 KTLKYRAHYIVHTFSNDLFENACMEFDEDNLKPTFRILWGIPGRSNAINIAERLGLPSDI 612
Query: 633 VQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLM 673
++++RQL G A AEIN +I++ME FK Q+ H+ EA++++M
Sbjct: 613 IESSRQLLGTAGAEINALIMDMENFKQQYQHHLQEAQYYVM 653
>gi|255557148|ref|XP_002519605.1| DNA mismatch repair protein muts2, putative [Ricinus communis]
gi|223541195|gb|EEF42750.1| DNA mismatch repair protein muts2, putative [Ricinus communis]
Length = 491
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 292/463 (63%), Positives = 356/463 (76%), Gaps = 28/463 (6%)
Query: 263 FKGLLLSSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKM 322
K + S SG GS++EPL+AVPLNDELQ+AR SV KAE DVLL LTEK
Sbjct: 1 MKIICCCSDSGAGSILEPLTAVPLNDELQRARESVAKAEADVLLMLTEK----------- 49
Query: 323 LNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKV----SSSEREWTIY 378
+NARATYSLSFGG P+++LP+DM T E + + ER+W +Y
Sbjct: 50 ---------INARATYSLSFGGACPDLYLPEDMDGLFTAEASEMRALKGSNPLERKWILY 100
Query: 379 LPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSA 438
+ KAYHPLLLQQH+Q Q+A KD + A ++ KL G N +GE D + S SE++VSA
Sbjct: 101 MRKAYHPLLLQQHRQNLQKAQKDAKKATSQ----KLQGDNGMSRGETDLDSSSSEIKVSA 156
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
LE AHPVP+D IA+ +RVLVITGPNTGGKTICLKTVGLA MMAKSGL++L SE ++PW
Sbjct: 157 LEQAHPVPVDFLIAQNSRVLVITGPNTGGKTICLKTVGLAAMMAKSGLYVLCSESVQLPW 216
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
FD + ADIGDEQSLSQSLSTFSGHLKQI +I SQST++SLVLLDE+GAGTNPLEG ALGM
Sbjct: 217 FDYILADIGDEQSLSQSLSTFSGHLKQISDIRSQSTNRSLVLLDEVGAGTNPLEGAALGM 276
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
SLLE+FAE G+LLTIATTHH ELK+LKYSN FENACMEFDEV LKPTYKI+WGVPGRS+
Sbjct: 277 SLLESFAEDGALLTIATTHHSELKSLKYSNSAFENACMEFDEVNLKPTYKIIWGVPGRSN 336
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
AINI+E+LGLP V+ AR+LYGAASAEINEVII+MERFK + E ++EA+H + LS++L
Sbjct: 337 AINISEKLGLPDRVINIARELYGAASAEINEVIIDMERFKQEVQELLYEAQHQIRLSKDL 396
Query: 679 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQ 721
H+ LL RRKI+EH +SQR++ +Q+I + AA+ARSL+HK +Q
Sbjct: 397 HEALLLARRKIMEHGSSQRYKMMQEIYEIAAMARSLLHKKVRQ 439
>gi|413933874|gb|AFW68425.1| hypothetical protein ZEAMMB73_052095 [Zea mays]
gi|413933875|gb|AFW68426.1| hypothetical protein ZEAMMB73_052095 [Zea mays]
Length = 587
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 293/545 (53%), Positives = 402/545 (73%), Gaps = 19/545 (3%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ-TYQDSLRLLDETNAAIEMQKHGSCS 113
R+LEW K+C +V+SFA T+ GR+AT QLW + +Y+ S LL ET AA+ + + +
Sbjct: 50 RLLEWGKVCDAVASFAGTAHGRDATTKQLWEVEDVSYEQSQMLLQETEAAVLLLDNAGGA 109
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+D +G+D ++SAI V + ++ EA+AV +L+ F E+LQ++++AA+K D R
Sbjct: 110 MDFSGLDT--IESAIHSVSGGAVIKGLEAMAVTSLMMFVESLQVNIKAAMKLDEGSCSRL 167
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
LT+ I+ +N+SL+KSI +VD+DGS+KD+ASP L++ R QVQ LE +LYQLMD L+
Sbjct: 168 TTLTETILDAVINKSLVKSIQDIVDDDGSVKDTASPELRRYREQVQRLENRLYQLMDKLM 227
Query: 234 RNENNESLFLEVSSIHGRLCIRTGADQLSF-KGLLLSSSSGIGSVIEPLSAVPLNDELQQ 292
RN ++E+ EV ++GR CIRT D SF GLLLSS S GS+IEP+ AVPLNDELQ+
Sbjct: 228 RNADDEASLSEVCIVNGRCCIRTTMDNSSFFDGLLLSSRSDAGSMIEPIVAVPLNDELQE 287
Query: 293 ARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLP 352
+RA V KAE DVL LT+K+++DLD I+ +L I+LD + ARA YS+++ GT P+++LP
Sbjct: 288 SRALVAKAELDVLSKLTDKIRLDLDSIQNLLQETIKLDKIAARAKYSIAYDGTFPDLYLP 347
Query: 353 QDMKRSLTHEPVTS-------KVSSSE---REWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
+ +E VTS ++SS++ + W +Y+P AYHPLLLQ+H++ +A +D+
Sbjct: 348 -----NFENETVTSATGGSIKQISSAQLPKKAWKLYMPNAYHPLLLQRHQENIHRAKRDV 402
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
SA E+RRR++YG + A + + ++L +++VS LE PVP+D IA +T VLVITG
Sbjct: 403 ASATAEIRRRRIYGQDIAEEDQLASDLDSMKLRVSQLEKDQPVPVDFMIAEETTVLVITG 462
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKTI LKTVGLA +MAK GL+IL+SE K+PWF++V+ADIGDEQSL+QSLSTFSGH
Sbjct: 463 PNTGGKTISLKTVGLASLMAKIGLYILASEPVKIPWFNAVYADIGDEQSLTQSLSTFSGH 522
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
LKQIG I ++STS+SLVLLDE+GAGTNPLEG ALGMSLLE+FAE+GS LT+ATTHHGELK
Sbjct: 523 LKQIGAIRAESTSESLVLLDEVGAGTNPLEGAALGMSLLESFAEAGSFLTLATTHHGELK 582
Query: 583 TLKYS 587
TLKYS
Sbjct: 583 TLKYS 587
>gi|449515676|ref|XP_004164874.1| PREDICTED: mutS2 protein-like [Cucumis sativus]
Length = 666
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 293/512 (57%), Positives = 383/512 (74%), Gaps = 12/512 (2%)
Query: 26 KNRRGRL-FCSTVAVSDSDDKKSR-----VVYESLRVLEWDKLCHSVSSFARTSLGREAT 79
+NR L F + +S S+D + + +SLR LEWDKLC SV+SFARTSLGR+A
Sbjct: 28 RNRTASLHFSLSANISVSNDIRDNTTQHSIRLDSLRALEWDKLCDSVASFARTSLGRQAI 87
Query: 80 LTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRP 139
QLWS N TY++SLRLLDETNAA+EM KHG CSLDL+GV+L LVKSAI +R+ +
Sbjct: 88 KAQLWSSNWTYEESLRLLDETNAAVEMHKHGGCSLDLSGVNLHLVKSAIEHAQRSLAMDG 147
Query: 140 NEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDE 199
NEA+A+ ALLQF++ LQ +L+ AIKED D RFMPLT +IM + VN+SLIK I+ VDE
Sbjct: 148 NEAIAIAALLQFADMLQFNLKTAIKEDVDWSTRFMPLTNVIMGMVVNQSLIKLILNAVDE 207
Query: 200 DGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGAD 259
DGS+KDSAS AL++SR QV+ LE+KL QLMD L+R+ + + FLEV + GR CI++ D
Sbjct: 208 DGSVKDSASYALRESRDQVRKLEKKLSQLMDSLVRSAKSGTSFLEVEIVDGRWCIKSEGD 267
Query: 260 QL-SFKGLLLSSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDE 318
QL KGLLLSS +GIGS IEP+SAVPLNDELQQARASV KAEEDVL LTEK+++D ++
Sbjct: 268 QLMDVKGLLLSSDAGIGSFIEPISAVPLNDELQQARASVAKAEEDVLFVLTEKVKMDFED 327
Query: 319 IEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSS----ERE 374
I K++ II+LDVVNARA+Y LSFGGT PN+ L + S+ + ++ S + + E
Sbjct: 328 ISKLIGCIIELDVVNARASYGLSFGGTCPNLVLLEGCNSSIANVCLSGDQSEASHLKKNE 387
Query: 375 WTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEM 434
W +YL +HPLLLQQ+++ + A +D+++A E+ RK GGN + K ++ ++S +M
Sbjct: 388 WVLYLQNTHHPLLLQQYRENLKNAKRDVKNAFNEM-GRKPPGGNMSWKEKEVIDISLFKM 446
Query: 435 QVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYA 494
+V LE A PV +D I+R+ +VLVITGPNTGGKT+CLKT+GLA MMAKSGLH+L+SE
Sbjct: 447 KVDQLEQARPVSVDFSISRRIKVLVITGPNTGGKTVCLKTIGLAAMMAKSGLHVLASESV 506
Query: 495 KVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
++PWFDS+FADIGDEQSL+QSLSTFSGHL++I
Sbjct: 507 QIPWFDSIFADIGDEQSLTQSLSTFSGHLRKI 538
>gi|297610758|ref|NP_001065027.2| Os10g0509000 [Oryza sativa Japonica Group]
gi|255679545|dbj|BAF26941.2| Os10g0509000 [Oryza sativa Japonica Group]
Length = 528
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 272/540 (50%), Positives = 371/540 (68%), Gaps = 26/540 (4%)
Query: 308 LTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEP--VT 365
+T+K+ ++LD I +L ++LD V ARA YS+++ GT P+++LP + +++
Sbjct: 1 MTDKILLELDNIRILLQATVELDKVAARAKYSIAYDGTYPDLYLPNFVNGTVSTATGGSI 60
Query: 366 SKVSS---SEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARK 422
S +SS S++ W + +P AYHPLLLQQH++ +A KD+ SA E+RRR++YG + +
Sbjct: 61 STISSAHLSKKAWKLCMPNAYHPLLLQQHQENLHRAKKDVASATAEIRRRRIYGQDNVEE 120
Query: 423 GEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMA 482
+ ++L +++VS +E PVP+D FIA T VLVITGPNTGGKTI LKTVGLA +MA
Sbjct: 121 DQLASDLDLMKIRVSQMEKDRPVPVDFFIAEGTTVLVITGPNTGGKTISLKTVGLASLMA 180
Query: 483 KSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLD 542
K GL+IL+SE K+PWF++V+ADIGDEQSL+QSLSTFSGHLKQIG I + STSQSLVLLD
Sbjct: 181 KIGLYILASEPVKIPWFNAVYADIGDEQSLTQSLSTFSGHLKQIGAIRAWSTSQSLVLLD 240
Query: 543 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 602
E+GAGTNPLEG ALGMSLLE+FAE+GS LT+ATTHHGELKTLKYSND FENACMEFDE
Sbjct: 241 EVGAGTNPLEGAALGMSLLESFAEAGSFLTLATTHHGELKTLKYSNDLFENACMEFDEDN 300
Query: 603 LKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFL 662
LKPT++ILWG+PGRS+AINIAERLGLP +++++RQL G A AEIN +I++ME FK Q+
Sbjct: 301 LKPTFRILWGIPGRSNAINIAERLGLPSDIIESSRQLLGTAGAEINALIMDMENFKQQYQ 360
Query: 663 EHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQL 722
H+ EA++++M S+ LH NL ++ I++H ++QR RK + IS+ A +ARS++ K QQ
Sbjct: 361 HHLQEAQYYVMQSKELHNNLEVAQKNIIDHTSAQRKRKARVISEYAVMARSIIRKKFQQF 420
Query: 723 CPSASQARSLVHKRA-QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSS 781
SA R L ++A Q +P + T + +N T + E
Sbjct: 421 RESAIAKRVLEEEKAVQNDKPERLKDPEPTSTPAVKKAQNTNISMATTTEGEDNG----- 475
Query: 782 VVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+P VGDLV+V + TV+K++ SK E+ VQ G MK +KF D+
Sbjct: 476 ---------------IPEVGDLVYVPKLKNEATVVKIDSSKNEVQVQAGIMKLKLKFKDV 520
>gi|302802119|ref|XP_002982815.1| hypothetical protein SELMODRAFT_445339 [Selaginella moellendorffii]
gi|300149405|gb|EFJ16060.1| hypothetical protein SELMODRAFT_445339 [Selaginella moellendorffii]
Length = 691
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 284/669 (42%), Positives = 416/669 (62%), Gaps = 17/669 (2%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L VLEW +L +VSSFA T+LGRE Q+ + T S LL ET+ A+E +
Sbjct: 33 ETLEVLEWKRLSSAVSSFASTALGRERL--QVLELPSTESASEMLLSETHGALEFEALRG 90
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
S DL + +VK + + L EA A+ A+L+ + +L+ + ++ +E+ +
Sbjct: 91 NSCDLGAIQTDVVKVGLTRASKGVALSGKEAAALAAMLEAARSLRHAAFSSFQENKEKQE 150
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
P+ M+ + + K+I V++DGS+KDSASP L+ +R + ERKL +LM
Sbjct: 151 ILRPIYDMLCSIDADVDTTKTIWNAVNDDGSVKDSASPELRTARMEQASCERKLQELMTR 210
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
++ + +V+S+ GRLC+ + S GLLL SS+ G+ S +EP +AV LN+
Sbjct: 211 IVIDRLAGDPNGQVASLDGRLCVAVSTENNSKVPGLLLQSSAGGLVSYVEPSAAVALNNS 270
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L QARA +AE VL LT K++ L L+ + DVV AR YS S G T P+
Sbjct: 271 LSQARADAAQAEYRVLDDLTTKLRPFLSNFSFTLDIVADFDVVLARGRYSSSIGATRPS- 329
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
F+ + S S+ E+ + L A HPLLL+QH+ + A L + L
Sbjct: 330 FVHAERDES----------ESTLDEFLVLLEGARHPLLLEQHRGNLRDAKAKLNTKRKIL 379
Query: 410 RRRKLYGGNAARKGEK-DTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
R K +A+ + + ++ +E +V+ LE + PVPID I R+T+V+ ITGPNTGGK
Sbjct: 380 NRMKSRAFTSAQDYQAAEEAITKAEEEVAELEASVPVPIDFLIKRETKVVTITGPNTGGK 439
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T +KT+GLAV+MA++GL++L+ E A +PW D V ADIGD+QSLSQSLSTFSGHL +I
Sbjct: 440 TAAIKTLGLAVLMARAGLYVLAKEPALIPWVDRVLADIGDQQSLSQSLSTFSGHLLRIKR 499
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I +STS SLVLLDE+G GT+ +EG ALGM++LE+FA +GSLLT+ATTHHGELK LKYS+
Sbjct: 500 IKEESTSSSLVLLDEVGTGTDFVEGAALGMAMLESFA-AGSLLTLATTHHGELKMLKYSD 558
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
D FENA +EFDE KLKPTY++LWG+PGRS+A+NIA RLGLP ++ AR L+GAA+AE+N
Sbjct: 559 DRFENASVEFDEEKLKPTYRLLWGIPGRSNALNIAARLGLPEEIIMEARSLHGAANAELN 618
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
EVI+ +E+ + +F + +++ L +R ++ L +++I E+ + +++ A
Sbjct: 619 EVIMTLEQARQKFEHDLSKSQKLLGETRRHYRALSIAQKEIEEYRKTAALDANDQLAVAE 678
Query: 709 AIARSLVHK 717
A ARS ++K
Sbjct: 679 AAARSDLNK 687
>gi|302800183|ref|XP_002981849.1| hypothetical protein SELMODRAFT_421325 [Selaginella moellendorffii]
gi|300150291|gb|EFJ16942.1| hypothetical protein SELMODRAFT_421325 [Selaginella moellendorffii]
Length = 643
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 249/668 (37%), Positives = 381/668 (57%), Gaps = 63/668 (9%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L VLEW +L +VSSFA T+LGR+ Q+ + T S LL ET+ A+E +
Sbjct: 33 ETLEVLEWKRLSSAVSSFASTALGRQRL--QVLELPSTESASEMLLSETHGALEFEALRG 90
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
S DL + +VK + + L EA A+ A+L+ + +L+ + ++ +E+ +
Sbjct: 91 NSCDLGAIQTDVVKVGLTRASKGVALSGREAAALAAMLEAARSLRHAAFSSFQENKEKQE 150
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
P+ M+ + + K+I V++DGS+KDSASP L+ +R + ERKL +LM
Sbjct: 151 ILRPIYDMLCSIDADVDTTKTIWNAVNDDGSVKDSASPELRTARMEQASCERKLQELMTR 210
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
++ + +V+S+ GRLC+ + S GLLL SS+ G+ S +EP +AV LN+
Sbjct: 211 IVIDRLAGDPNGQVASLDGRLCVAVSTENSSKVPGLLLQSSAGGLVSYVEPSAAVALNNS 270
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L QARA +AE VL LT K++ L L+ + DVV AR YS S G T P+
Sbjct: 271 LSQARADAAQAEYRVLDDLTTKLRPSLSNFSFTLDIVADFDVVLARGRYSSSIGATRPS- 329
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
F+ + S S+ E+ + L A HPLLL+QH+ ++A K L +
Sbjct: 330 FVHAERDES----------ESTLDEFLVLLEGARHPLLLEQHRGNLREA-KIL----NRM 374
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKT 469
+ R + E+ ++ +E +V+ LE + PVPID I R+T+V+ ITGPNTGGKT
Sbjct: 375 KSRAFTSAQDYQAAEE--AITKAEEEVAELEASAPVPIDFLIKRETKVVTITGPNTGGKT 432
Query: 470 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 529
+KT+GLAV+MA++GL++L+ E A +PW D V ADIGD+QSLSQSLSTFSGHL +I
Sbjct: 433 AAIKTLGLAVLMARAGLYVLAKEPALIPWVDRVLADIGDQQSLSQSLSTFSGHLLRI--- 489
Query: 530 ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589
++G GT+ +EG ALGM++L+ +D
Sbjct: 490 -------------KVGTGTDFVEGAALGMAMLD-------------------------DD 511
Query: 590 FFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINE 649
FENA +EFDE KLKPTY++LWG+PGRS+A+NIA RLGLP ++ AR L+GAA+AE+NE
Sbjct: 512 RFENASVEFDEEKLKPTYRLLWGLPGRSNALNIAARLGLPEEIIMEARSLHGAANAELNE 571
Query: 650 VIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAA 709
VI+ +E+ + +F + +++ L ++ ++ L +++I E+ + +++ A A
Sbjct: 572 VIMTLEQARQKFEHDLSKSQKLLGETKRHYRALSIAQKEIEEYRKTAALDANDQLAVAEA 631
Query: 710 IARSLVHK 717
ARS ++K
Sbjct: 632 AARSDLNK 639
>gi|434396858|ref|YP_007130862.1| MutS2 protein [Stanieria cyanosphaera PCC 7437]
gi|428267955|gb|AFZ33896.1| MutS2 protein [Stanieria cyanosphaera PCC 7437]
Length = 799
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 263/800 (32%), Positives = 401/800 (50%), Gaps = 128/800 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +S+FA T LG A + + T +SL+LL +T +++
Sbjct: 5 ETLELLEWHRLCQHLSTFAATKLGTVAA--RGLQLPTTKTESLQLLAQTKEVYSLEQQLD 62
Query: 112 CSLDLTGVD---LSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
S G++ SL ++ I L+ LL + TL R ++ D
Sbjct: 63 SSWSFKGIEDIGESLERAKI-----------GGLLSAQELLDLATTLAGVRR--LRRTID 109
Query: 169 LYIRFMP-LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
+P LTQ++ +L L + I +D+ G + D A+P L + R Q++ L K+Y+
Sbjct: 110 AKTEDLPTLTQLVTELRTYPELEQEIHHCIDDRGEVTDRANPKLAEIRSQIKRLRDKIYK 169
Query: 228 LMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLLS-SSSGIGSVIEPLSAVP 285
++ +++ + ++ GR I A Q S G++ SS+G +EP + V
Sbjct: 170 ILQNIVQKQGGAVQEAVITQRDGRFVIPVKAPQKDSIPGIVHDISSTGSTLYVEPNAVVQ 229
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
L ++L+QA + EE VL ALTEK+ +++E++L LD+ ARA YS G
Sbjct: 230 LGNQLRQAERQEKREEEAVLRALTEKVAAVQEDLEQLLAIATVLDLATARARYSWWLGAN 289
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQAWKDLE 403
P V+ E T+ L + HPLL+ QQH+Q T+
Sbjct: 290 PPRFV----------------DVNQGE---TVTLRQLRHPLLVWQQQHEQGTE------- 323
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
VPID+ I + RV+ ITGP
Sbjct: 324 ----------------------------------------VVPIDVQIQPQIRVVAITGP 343
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT+GLA +MAK+GL I + E ++PWF+ V ADIGDEQSL QSLSTFSGH+
Sbjct: 344 NTGGKTVTLKTIGLAALMAKAGLFIPAKEPVEIPWFEQVLADIGDEQSLQQSLSTFSGHI 403
Query: 524 KQIGNIISQSTSQ-SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
++I II S+ Q SL+L DEIGAGT+P EG+AL +++L+ AE +LLTIATTH+GELK
Sbjct: 404 RRISRIIETSSLQDSLILFDEIGAGTDPAEGSALAIAILKYLAEK-ALLTIATTHYGELK 462
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG- 641
LKY ++ FENA +EF++ LKPTY++LWG+PGRS+A+ IA RLGL ++++A+Q G
Sbjct: 463 ALKYQDERFENASVEFNDQTLKPTYRLLWGIPGRSNALTIAHRLGLKSEIIEDAQQRVGV 522
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
+AS E+N VI +E + + EA L + + + + E R R++
Sbjct: 523 SASQELNLVISALEAERREQENKAKEATKLLEQTERFYTEVSAKASSLQE-----REREL 577
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLT 761
KIS K+ QQ +A + V +R QQ +A ++ T+
Sbjct: 578 -KISQ---------EKAVQQAILAAKGEIAQVIRRLQQGEQTAQKAQKATE--------- 618
Query: 762 SNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPS 821
E A + K KQ R K P VG+ + + S G+ G V+ ++
Sbjct: 619 -----------ELNQIAERELAK-TKQPKRTKPGYKPKVGERIKIPSLGQTGEVLSIDEE 666
Query: 822 KEEIVVQVGNMKWIMKFTDI 841
++++ V+ G MK + +I
Sbjct: 667 EKQLTVRFGLMKMTVAVDEI 686
>gi|51849614|dbj|BAD42336.1| DNA mismatch repair protein Mut2-like protein [Nannochloris
bacillaris]
Length = 820
Score = 357 bits (915), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 250/711 (35%), Positives = 371/711 (52%), Gaps = 111/711 (15%)
Query: 42 SDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETN 101
+ D +L VLEW++LCH V+SFA T+LG+ T + N + RLL ET
Sbjct: 104 TSDHLGAAALSTLHVLEWERLCHHVASFASTTLGQGMCATLYPATNPAICE--RLLAETR 161
Query: 102 AAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRA 161
A ++ + +D G+ AI R L ++V +LL + LQ +++
Sbjct: 162 AVDALESEFASDVDFGGIQTRQAHEAILRASRGGMLTGRRLVSVASLLVGAAKLQKAIQY 221
Query: 162 AIKED-----ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRG 216
K+ D + P+ ++ + + L I + +DG ++++AS +K++ G
Sbjct: 222 TAKDAEFTGLGDTSV-LSPVLEIFRHVVTHPELSSEIGFAIKDDGHVREAASDEVKKAAG 280
Query: 217 QVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGAD-QLSFKGLLLSSSSGIG 275
+V+ +E ++ ++ + L E++ GR+C A +G+LL S G
Sbjct: 281 KVRTIEGRIRGIL---------KGLGGEITEYGGRMCCSIAASIDGPPRGILLGSGPGGT 331
Query: 276 S-VIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLD-EIEKMLNGIIQLDVVN 333
S +EP +AVPLN+EL A+ +T AEE VL LT K+ DL+ ++E L+ ++ LD V
Sbjct: 332 SWYVEPAAAVPLNNELTGAKGELTTAEEAVLWKLTGKVG-DLEADLEHALHAVVWLDSVA 390
Query: 334 ARATYSLSFGGTSPNIF-LPQDMK------------RSLTHEPVTSKVSSSER------- 373
ARA Y GGT P + P+ K + + + K+S+
Sbjct: 391 ARARYGRWIGGTLPRLIPFPKTGKARGGSAKRKKQQQQQQEQEESLKISTGNEEGDEEEE 450
Query: 374 -----EWTIYLPKAYHPLLLQQH-------------------KQKTQQ---AWKDLESAN 406
++ +YL K HPLLL ++ +KT+Q W+ S+N
Sbjct: 451 DVEPSKYIVYLRKLKHPLLLGEYLLARQNGGSSGGRAAGAAAGEKTEQRLPGWRPPSSSN 510
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
RK G ++ + S E S+ A PVP+DIFI TR ++ITGPNTG
Sbjct: 511 -----RKTSSGISSSSDSDEDQDSLGENSSSSSFSA-PVPVDIFIPSSTRAVIITGPNTG 564
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT +K +GLA + A++GL I ++ A +P FDSV ADIGDEQSL+ SLSTFSGHL++I
Sbjct: 565 GKTASMKALGLASLAARAGLPIPAAGPALLPCFDSVLADIGDEQSLTASLSTFSGHLRRI 624
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE---SGSLLTIATTHHGELKT 583
+ S+ST +SLVLLDE+G GT+P EG ALG++L++ A +G+ LT+ATTHH EL
Sbjct: 625 EALRSESTGKSLVLLDELGTGTDPTEGAALGIALIKVLARGGVAGAALTMATTHHSELTA 684
Query: 584 LKYSNDF---------------------------------FENACMEFDEVKLKPTYKIL 610
LKYS + FENA +EFDE+KL PTYK+L
Sbjct: 685 LKYSEESDVKIIAEGSDKNANTSSANKTSPAASAAAAGPKFENASVEFDEIKLAPTYKLL 744
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERF-KTQ 660
WGVPGRS+A+NIAERLGL VV+ AR+ G A+A +N+ I+ +E KTQ
Sbjct: 745 WGVPGRSNALNIAERLGLDAEVVEAARERLGVAAAAVNDSIVVLEEARKTQ 795
>gi|428770493|ref|YP_007162283.1| MutS2 protein [Cyanobacterium aponinum PCC 10605]
gi|428684772|gb|AFZ54239.1| MutS2 protein [Cyanobacterium aponinum PCC 10605]
Length = 803
Score = 350 bits (897), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 256/795 (32%), Positives = 403/795 (50%), Gaps = 120/795 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L++LEW +LC +S+FA T LG A +Q +I T + LL +T + ++ +
Sbjct: 5 ETLKLLEWQRLCQHLSTFASTKLG--AIASQNLTIPSTLAHTRLLLAQTQEVVTLETDIN 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQ--LSLRAAIKEDADL 169
C+ G+ V I + L E LL + TL LR I + DL
Sbjct: 63 CNWSFQGI--HDVGDGIERAKMGGMLSGEE------LLNLATTLAGVRKLRRIIDDKNDL 114
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ L +++ + L + I +D+ G I + ASP L + R +++ L K+ Q +
Sbjct: 115 ----ITLQELVANIRTFPELEQEIHYCIDDRGEITERASPQLAEIRQKIKSLRSKIQQTL 170
Query: 230 DMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLN 287
+I+ N L ++ R + AD ++ +S GS +EP + V L
Sbjct: 171 QGIIQRYGNALQELVITQRGDRFVLPVKADHSGIITGIVHDTSSTGSTLYVEPKAVVELG 230
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
++LQ +R + EE +L AL+EK+ + ++E++L LD+ ARA YSL P
Sbjct: 231 NKLQTSRNQEKREEEKILRALSEKVAENWQDLEELLAVATTLDLATARARYSLWLDAYPP 290
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
V ++ E +I L + HPLL+ Q + +
Sbjct: 291 EF------------------VDFADGE-SITLRQVRHPLLVWQERHE------------- 318
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
E + +PID+ I+ +TRV+ ITGPNTGG
Sbjct: 319 --------------------------------EGSQVIPIDVRISPETRVVAITGPNTGG 346
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT+G+ +MAK GL I + A++PWF++V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 347 KTVTLKTIGMVALMAKVGLFIPAKSPARIPWFNNVLADIGDEQSLQQSLSTFSGHIRRIV 406
Query: 528 NIISQ-STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + + SLVLLDE+GAGT+P EGTA+ +S+L+ A S +LLTIATTH+GELK+LKY
Sbjct: 407 RILDEIKENNSLVLLDEVGAGTDPNEGTAIAISILKYLA-SNNLLTIATTHYGELKSLKY 465
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
S+ FENA +EFD+V L+PTY++LWG+PGRS+AI IA+RLGL +V A++L G SA+
Sbjct: 466 SDSRFENASVEFDDVSLQPTYRLLWGIPGRSNAITIAQRLGLNDDIVAEAKELVGGFSAD 525
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+NE+I +E+ + + + +A+ L + ++ + K + A +R K ++ +
Sbjct: 526 VNELISALEKQRKEQEDKHQQAQDLLTKTELFYQQV---EAKAISLQARERDLKKEQEQE 582
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
VHK L + SQ ++ Q+ P+A ++ H T N +
Sbjct: 583 --------VHKL---LLDAKSQINQVIKGLKQKGSPTA----------QDAHQATENLGK 621
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
D+ P Q + K + P VG+ V + S G+ V+ V+ S E+I
Sbjct: 622 IG-DRFLTPI-----------QKSKSKSSYKPKVGERVRILSIGQVAEVLGVDDSNEQIS 669
Query: 827 VQVGNMKWIMKFTDI 841
+ G MK ++ F+D+
Sbjct: 670 ARFGLMKMVIPFSDL 684
>gi|428223909|ref|YP_007108006.1| MutS2 family protein [Geitlerinema sp. PCC 7407]
gi|427983810|gb|AFY64954.1| MutS2 family protein [Geitlerinema sp. PCC 7407]
Length = 791
Score = 345 bits (886), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 260/810 (32%), Positives = 405/810 (50%), Gaps = 145/810 (17%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
+ E+L +LEW +LC +++FA T LG A + W + ++S RLL +T ++
Sbjct: 2 IASETLDLLEWPRLCQHLATFASTKLGTVAA--RHWQPAASLEESQRLLAQTEEVYRLES 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
+ L G+ + ++ R L E LA+ L + +LR I + AD
Sbjct: 60 RQTSGLPFDGI--MDIGPSLERAERQGVLSGEELLAIATTLAGAR----NLRRVIDDQAD 113
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPAL----KQSRGQVQMLERK 224
+ + LT+++ +L + +SI +D+ G + D ASP L ++ R Q + + +
Sbjct: 114 MPV----LTELVSELRTYPEIEQSIHFCIDDRGEVMDRASPKLAEIREKQRSQREEVRQT 169
Query: 225 LYQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPL 281
L+++M ++++ V + G R I A + G++ +S+SG +EP
Sbjct: 170 LFRIM-----QRQSQAMQESVITQRGDRFVIPVKASHKDAIPGIVHDTSTSGATLYVEPH 224
Query: 282 SAVPLNDELQQARASVTKAEEDVLLA-LTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
+ V N+ L+Q + +AEE V+L LT ++ L +E++L + LD+ ARA YS
Sbjct: 225 TVVERNNRLRQLQRQ-EQAEEAVILGRLTAEIAEVLPTLERLLAIVTTLDLAAARARYSF 283
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQA 398
GG P ++R+ + L HPLL+ QQH+Q
Sbjct: 284 WLGGNVPRF-----VQRTAGE--------------VVTLRSLRHPLLVWQQQHEQ----- 319
Query: 399 WKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVL 458
G+A VPID+ I + RV+
Sbjct: 320 ------------------GSAV------------------------VPIDLMIQPQLRVV 337
Query: 459 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 518
ITGPNTGGKT+ LKT+GLA +MAK+GL++ + E ++PWFD + ADIGDEQSL QSLST
Sbjct: 338 AITGPNTGGKTVTLKTLGLAALMAKAGLYVAAREPVEIPWFDQILADIGDEQSLQQSLST 397
Query: 519 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578
FSGH+++I I+ + T SLVLLDE+GAGT+P EG+AL ++LL+ A++ LT+ATTH
Sbjct: 398 FSGHIRRIVRILDRVTPDSLVLLDEVGAGTDPTEGSALAIALLQTLADAAQ-LTVATTHF 456
Query: 579 GELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
GELK LKY +D FENA +EFD+V L PTY++LWG+PGRS+A+ IA RLGL VV A+Q
Sbjct: 457 GELKALKYQDDRFENASVEFDDVSLSPTYRLLWGIPGRSNALTIARRLGLSDSVVAQAQQ 516
Query: 639 -LYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLH------KNLLRTRRKILE 691
+ G+AS E+N+VI +E + + + EA L+ + LH LL+ R + L+
Sbjct: 517 RVGGSASEEVNQVIAGLEAQRRRQEDKATEAAKILVQAEQLHAEVARKAGLLKQREQALQ 576
Query: 692 HCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCT 751
++ R VQ +A A AR + + +QL R + AQQ A+Q+L+
Sbjct: 577 Q---EQERAVQ---EAIAQARREIAQVIKQL------QRGPTAQGAQQ----ATQNLNAI 620
Query: 752 KVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGK 811
++ + + +P+ K P VGD V + G+
Sbjct: 621 ---------------------------ATRQLPSQQAAPKPKPGFQPQVGDRVRIPRLGQ 653
Query: 812 KGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V+ E+ V+ G MK + D+
Sbjct: 654 TAEVLTAPDEDGEMTVRFGLMKMTVALEDV 683
>gi|428220318|ref|YP_007104488.1| MutS2 family protein [Synechococcus sp. PCC 7502]
gi|427993658|gb|AFY72353.1| MutS2 family protein [Synechococcus sp. PCC 7502]
Length = 697
Score = 345 bits (886), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 269/800 (33%), Positives = 396/800 (49%), Gaps = 121/800 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +S+FA T LG A I Q+Y S LL +T A ++ S
Sbjct: 4 ETLELLEWSRLCRHLSTFAATKLG--AIAASHLVIPQSYDRSQELLTQTKEAYYLETKLS 61
Query: 112 CSLDLTGV-DLS--LVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
L L GV D+S L ++ ++ V L P E A+ L + L+ SL A A
Sbjct: 62 GGLSLEGVQDISGALARAEVQGV-----LSPLELFAIATTLAGARNLRRSLDNAENCPA- 115
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L ++ + L K I ++E G++ + AS L R + K+
Sbjct: 116 -------LQALVSDVRTYPDLEKEIYHCIEEGGTVLERASEKLGNIRRTSHQVREKIINT 168
Query: 229 MDMLIRNENNESLFLEVSSIHGRLCIRTGA---DQLSFKGLLL-SSSSGIGSVIEPLSAV 284
+ +I+ +NN ++ R + A DQ+ +G++ +S SG+ +IEP S V
Sbjct: 169 LQGIIQRKNNALQENIITQRGDRYVLSVKASHKDQI--QGIVHDASGSGLTLLIEPSSVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
N++L+Q A + E +L L+ K+ +++ ++L + ++D+ ARA Y+
Sbjct: 227 AGNNDLRQLVAREQREIEIILTQLSAKVTAVAEDLSRLLAILTEIDLAIARARYAYWLKA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
PN L + +SL+ P I L HPLL+ Q +Q ES
Sbjct: 287 NPPN--LSKSQPQSLSQNP-----------QLITLRNLRHPLLVWQEQQ---------ES 324
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
T VP+DI I+ + +V+VITGPN
Sbjct: 325 GRT------------------------------------VVPVDILISPEIKVVVITGPN 348
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT LKT GLA +MAK+G+ I + E ++PWFD + ADIGDEQSL Q+LSTFSGH++
Sbjct: 349 TGGKTATLKTFGLAAIMAKAGMFIPAPEPVEIPWFDLILADIGDEQSLQQNLSTFSGHIR 408
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
+IG I+ T SLVLLDE+GAGT+P EG+A+ +LLE A + LTIATTH GELKTL
Sbjct: 409 RIGRILELITPASLVLLDEVGAGTDPSEGSAIATALLEHLANHAN-LTIATTHFGELKTL 467
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
KY N FENA +EFD+V+L PTYK+LWG+PGRS+A+ IA RLGLP ++ +A+ G S
Sbjct: 468 KYQNPQFENASVEFDDVQLAPTYKLLWGIPGRSNALAIARRLGLPEDIISSAQNHVGYGS 527
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
+EIN VI E+E + Q E A L LHK + + + L Q R Q+I
Sbjct: 528 SEINLVIAELETQRRQQTEKTQAATILLAEMEKLHKEI--SDKSQLLRSQYQELRAKQEI 585
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
AAI +QA+ + + ++L+ + QS + N
Sbjct: 586 EVTAAI----------------NQAKKEIARVIRKLQ-AGDQSPQSAQHADN-------- 620
Query: 765 QQTTVDKVEHPATAS--SSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSK 822
+ T + K+ P+ + ++ IK +P +GD V + K G V+ +
Sbjct: 621 RMTQISKMHLPSQQKQPQANLEPIKY--------IPKLGDQVKIIKLNKIGQVLSTGTNN 672
Query: 823 -EEIVVQVGNMKWIMKFTDI 841
EI V+VG MK +K DI
Sbjct: 673 SNEIGVRVGGMKMTVKIEDI 692
>gi|425465434|ref|ZP_18844743.1| MutS2 protein [Microcystis aeruginosa PCC 9809]
gi|389832333|emb|CCI24146.1| MutS2 protein [Microcystis aeruginosa PCC 9809]
Length = 789
Score = 343 bits (879), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 250/793 (31%), Positives = 390/793 (49%), Gaps = 122/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A + + ++ ++SL LL +T +++
Sbjct: 5 ETLELLEWPRLCQHLATFAATKLG--AIAIRQLPLPESKEESLNLLCQTKEVYSLEQKLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ S + A+ L E L + L LR I E D+ +
Sbjct: 63 SRLSFDGI--SDIGDALERAHLGGLLSGQELLNIATTLAGVR----RLRRLIDEQEDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ ++ + + I + +DEDG I D ASP L++ RGQ+++++ ++Y+ +
Sbjct: 117 ----LKELVAEIRTYPEIEQEIHRCIDEDGRISDRASPQLREIRGQMKVIKERIYRKLQD 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R I A Q G++ +SS+G IEP S V ++
Sbjct: 173 IMQKQGGAIQEAVITQRSDRWVIPVKAAQKEQIPGIIHDTSSTGATFYIEPHSIVDQGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q R EE +L L+ + +++E +L +LD+ ARA YSL G P+
Sbjct: 233 LRQYRRQEQIEEEKILRQLSNTIAEAFEDLEYLLAIATRLDLATARARYSLWLEGNPPHF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANTE 408
+ SE TI L HPLL Q+H ++
Sbjct: 293 ------------------IDGSE---TITLRNLRHPLLWWQKHHEQ-------------- 317
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
GG VPI++ I+ + RV+ ITGPNTGGK
Sbjct: 318 -------GGEV-------------------------VPINVQISPEIRVVAITGPNTGGK 345
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK+GL I + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 TVTLKTLGLAALMAKAGLFIPAREPVEIPWFDHVLADIGDEQSLQQSLSTFSGHIRRIVR 405
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I++ S+SLVLLDE+GAGT+P EG+ L +++L+ A+ SLLT+ATTH+GELK LKY +
Sbjct: 406 ILAALNSRSLVLLDEVGAGTDPAEGSPLAIAILQYLADH-SLLTVATTHYGELKALKYRD 464
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
FENA +EFD+ L PTY++LWG+PGRS+A+ IA+RLGL +V AR G S EIN
Sbjct: 465 SRFENASVEFDDRTLSPTYRLLWGIPGRSNALTIAQRLGLSPEIVAEARNHLGGLSEEIN 524
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+VI +E + + EA L + + + TR L+ +R R++++ +
Sbjct: 525 QVIAGLEAQRREQESKAQEASQLLQQTEKFYTE-VSTRANSLQ----ERERELKRYQE-- 577
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ Q+ SA + V +R Q TK G++ T T
Sbjct: 578 --------QEIQKALLSAKAEINEVIRRLQA----------GTKTGRDAQKATEEL--TA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ + P T + V P VG+ V + + G+ V+ + P +EI ++
Sbjct: 618 IAERLLPKTEKTKV------------NYRPQVGERVRLPNLGQTAEVLAISPESDEISLR 665
Query: 829 VGNMKWIMKFTDI 841
G MK + I
Sbjct: 666 FGMMKMTLPLDQI 678
>gi|425446466|ref|ZP_18826469.1| MutS2 protein [Microcystis aeruginosa PCC 9443]
gi|389733282|emb|CCI02921.1| MutS2 protein [Microcystis aeruginosa PCC 9443]
Length = 789
Score = 342 bits (878), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 251/793 (31%), Positives = 388/793 (48%), Gaps = 122/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A + + ++ ++SL LL +T +++
Sbjct: 5 ETLELLEWPRLCQHLATFAATKLG--AIAIRQLPLPESKEESLNLLCQTKEVYSLEQKLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ S + A+ L E L + L LR I E D+ +
Sbjct: 63 SRLSFDGI--SDIGDALERAHLGGLLSGQELLNIATTLAGVR----RLRRLIDEQEDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ ++ + + I + +DEDG I D ASP L++ RGQ++++ ++Y+ +
Sbjct: 117 ----LKELVAEIRTYPEIEQEIHRCIDEDGRISDRASPQLREIRGQMKVIRERIYRKLQD 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R I A Q G++ +SS+G IEP S V ++
Sbjct: 173 IMQKQGGAIQEAVITQRSDRWVIPVKAAQKEQIPGIIHDTSSTGATFYIEPHSIVDQGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q R EE +L L+ + +++E +L +LD+ ARA YSL G P+
Sbjct: 233 LRQYRRQEQIEEEKILRQLSNLIAEAFEDLEYLLAIATRLDLATARARYSLWLEGNPPHF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANTE 408
+ SE TI L HPLL Q+H ++
Sbjct: 293 ------------------IDGSE---TITLRNLRHPLLWWQKHHEQ-------------- 317
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
GG VPI++ I + RV+ ITGPNTGGK
Sbjct: 318 -------GGEV-------------------------VPINVQITPEIRVVAITGPNTGGK 345
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK+GL I + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 TVTLKTLGLAALMAKAGLFIPAREPVEIPWFDQVLADIGDEQSLQQSLSTFSGHIRRIVR 405
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I++ S+SLVLLDE+GAGT+P EG+ L +++L+ A+ SLLT+ATTH+GELK LKY +
Sbjct: 406 ILAALNSRSLVLLDEVGAGTDPAEGSPLAIAILQYLADH-SLLTVATTHYGELKALKYRD 464
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
FENA +EFD+ L PTY++LWG+PGRS+A+ IA+RLGL +V AR G S EIN
Sbjct: 465 SRFENASVEFDDRTLSPTYRLLWGIPGRSNALTIAQRLGLSPEIVAEARNHLGGLSEEIN 524
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+VI +E + + EA L + + + TR L+ +R R++++ +
Sbjct: 525 QVIAGLEAQRREQESKAKEASQLLQQTEKFYTE-VSTRANSLQ----ERERELKRYQE-- 577
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ Q+ SA + V +R Q TK G++ T T
Sbjct: 578 --------QEIQKALLSAKAEINDVIRRLQ----------SGTKTGRDAQKATEEL--TA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ + P T + V P VG+ V + + G+ V+ + P EEI ++
Sbjct: 618 IAERLLPKTEKTKV------------NYRPQVGERVRLPNLGQTAEVLAISPESEEISLR 665
Query: 829 VGNMKWIMKFTDI 841
G MK + I
Sbjct: 666 FGMMKMTLPLDQI 678
>gi|425469689|ref|ZP_18848604.1| MutS2 protein [Microcystis aeruginosa PCC 9701]
gi|389880428|emb|CCI38809.1| MutS2 protein [Microcystis aeruginosa PCC 9701]
Length = 789
Score = 342 bits (876), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 249/793 (31%), Positives = 388/793 (48%), Gaps = 122/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A + + ++ ++SL LL +T +++
Sbjct: 5 ETLELLEWPRLCQHLATFAATKLG--AIAIRQLPLPESKEESLNLLCQTKEVYSLEQKLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ S + A+ L E L + L LR I E D+ +
Sbjct: 63 SRLSFDGI--SDIGDALERAHLGGLLSGQELLNIATTLAGVR----RLRRLIDEQEDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ ++ + + I + +DEDG I D ASP L++ RGQ++++ ++Y+ +
Sbjct: 117 ----LKELVAEIRTYPEIEQEIHRCIDEDGRISDRASPQLREIRGQMKVIRERIYRKLQD 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R I A Q G++ +SS+G IEP S + ++
Sbjct: 173 IMQKQGGAIQEAVITQRSERWVIPVKAAQKEQIPGIIHDTSSTGATFYIEPHSIIDQGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q R EE +L L+ + +++E +L +LD+ ARA YSL G P+
Sbjct: 233 LRQYRRLEQIEEEKILRQLSNTIAEAFEDLEYLLAIATRLDLATARARYSLWLEGNPPHF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANTE 408
+ SE TI L HPLL Q+H ++
Sbjct: 293 ------------------IDGSE---TITLRNLRHPLLWWQKHHEQ-------------- 317
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
GG +PI++ I + RV+ ITGPNTGGK
Sbjct: 318 -------GGEV-------------------------IPINVQITPEIRVVAITGPNTGGK 345
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK+GL I + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 TVTLKTLGLAALMAKAGLFIPAREPVEIPWFDQVLADIGDEQSLQQSLSTFSGHIRRIVR 405
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I++ S+SLVLLDE+GAGT+P EG+ L +++L+ A+ SLLT+ATTH+GELK LKY +
Sbjct: 406 ILAALNSRSLVLLDEVGAGTDPAEGSPLAIAILQYLADH-SLLTVATTHYGELKALKYRD 464
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
FENA +EFD+ L PTY++LWG+PGRS+A+ IA+RLGL +V AR G S EIN
Sbjct: 465 SRFENASVEFDDRTLSPTYRLLWGIPGRSNALTIAQRLGLSAEIVAEARNHLGGLSEEIN 524
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+VI +E + + EA L + + + TR L+ +R R++++ +
Sbjct: 525 QVIAGLEAQRREQESKAQEASQLLQQTEKFYTE-VSTRANSLQ----ERERELKRYQE-- 577
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ Q+ SA + V +R Q TK G++ T T
Sbjct: 578 --------QEIQKALLSAKAEINEVIRRLQA----------GTKTGRDAQKATEEL--TA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ + P T + V P VG+ V + + G+ V+ + P EEI ++
Sbjct: 618 IAERLLPKTEKTKV------------NYRPQVGERVRLPNLGQTAEVLAISPESEEISLR 665
Query: 829 VGNMKWIMKFTDI 841
G MK + I
Sbjct: 666 FGMMKMTLPLDQI 678
>gi|166365089|ref|YP_001657362.1| recombination and DNA strand exchange inhibitor protein
[Microcystis aeruginosa NIES-843]
gi|166087462|dbj|BAG02170.1| DNA mismatch repair protein [Microcystis aeruginosa NIES-843]
Length = 789
Score = 342 bits (876), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 251/793 (31%), Positives = 391/793 (49%), Gaps = 122/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A + QL + ++ ++SL LL +T +++
Sbjct: 5 ETLELLEWPRLCQHLATFAATKLGAMA-IRQL-PLPESKEESLNLLCQTKEVYSLEQKLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + + A+ L E L + L LR I E D+ +
Sbjct: 63 SRLSFDGI--TDIGDALERAHLGGLLSGQELLNIATTLAGVR----RLRRLIDEQEDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ ++ + + I + +DEDG I D ASP L++ RGQ++++ ++Y+ +
Sbjct: 117 ----LKELVAEIRTYPEIEQEIHRCIDEDGRISDRASPQLREIRGQMKVIRERIYRKLQD 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R I A Q G++ +SS+G IEP S V ++
Sbjct: 173 IMQKQGGAIQEAVITQRSDRWVIPVKAAQKEQIPGIIHDTSSTGATFYIEPHSIVDQGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q R EE +L L+ + +++E +L +LD+ ARA YSL G P+
Sbjct: 233 LRQYRRQEQIEEEKILRQLSNTIAEAFEDLEYLLAIATRLDLATARARYSLWLEGNPPHF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANTE 408
+ SE TI L HPLL Q+H ++
Sbjct: 293 ------------------IDGSE---TITLRNLRHPLLWWQKHHEQ-------------- 317
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
GG VPI++ I+ + RV+ ITGPNTGGK
Sbjct: 318 -------GGEV-------------------------VPINVQISPEIRVVAITGPNTGGK 345
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK+GL I + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 TVTLKTLGLAALMAKAGLFIPAREPVEIPWFDHVLADIGDEQSLQQSLSTFSGHIRRIVR 405
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I++ S+SLVLLDE+GAGT+P EG+ L +++L+ A+ SLLT+ATTH+GELK LKY +
Sbjct: 406 ILAALNSRSLVLLDEVGAGTDPAEGSPLAIAILQYLADH-SLLTVATTHYGELKALKYRD 464
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
FENA +EFD+ L PTY++LWG+PGRS+A+ IA+RLGL +V AR G S EIN
Sbjct: 465 SRFENASVEFDDRTLSPTYRLLWGIPGRSNALTIAQRLGLSPEIVAEARNHLGGLSEEIN 524
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+VI +E + + EA L + + + TR L+ +R R++++ +
Sbjct: 525 QVIAGLEAQRREQESKAQEASQLLQQTEKFYTE-VSTRANSLQ----ERERELKRYQE-- 577
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ Q+ SA + V +R Q TK G++ T T
Sbjct: 578 --------QEIQKALLSAKAEINEVIRRLQA----------GTKTGRDAQKATEEL--TA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ + P T + V P VG+ V + + G+ V+ + P +EI ++
Sbjct: 618 IAERLLPKTEKTKV------------NYRPQVGERVRLPNLGQTAEVLAISPESDEISLR 665
Query: 829 VGNMKWIMKFTDI 841
G MK + I
Sbjct: 666 FGMMKMTLPLDQI 678
>gi|422303606|ref|ZP_16390957.1| MutS2 protein [Microcystis aeruginosa PCC 9806]
gi|389791362|emb|CCI12788.1| MutS2 protein [Microcystis aeruginosa PCC 9806]
Length = 789
Score = 341 bits (875), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 249/793 (31%), Positives = 390/793 (49%), Gaps = 122/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A + + ++ ++SL LL +T +++
Sbjct: 5 ETLELLEWPRLCQHLATFAATKLG--AIAIRQLPLPESKEESLNLLCQTKEVYSLEQKLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + + A+ L E L + L LR I E D+ +
Sbjct: 63 SRLSFDGI--TDIGDALERAHLGGLLSGQELLNIATTLAGVR----RLRRLIDEQEDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ ++ + + I + +DEDG I D ASP L++ RGQ+++++ ++Y+ +
Sbjct: 117 ----LKELVAEIRTYPEIEQEIHRCIDEDGRISDRASPQLREIRGQMKVIKERIYRKLQD 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R I A Q G++ +SS+G IEP S V ++
Sbjct: 173 IMQKQGGAIQEAVITQRSDRWVIPVKAAQKEQIPGIIHDTSSTGATFYIEPHSIVDQGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q R EE +L L+ + +++E +L +LD+ ARA YSL G P+
Sbjct: 233 LRQYRRQEQIEEEKILRQLSNTIAEAFEDLEYLLAIATRLDLATARARYSLWLEGNPPHF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANTE 408
+ SE TI L HPLL Q+H ++
Sbjct: 293 ------------------IDGSE---TITLRNLRHPLLWWQKHHEQ-------------- 317
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
GG VPI++ I+ + RV+ ITGPNTGGK
Sbjct: 318 -------GGEV-------------------------VPINVQISPEIRVVAITGPNTGGK 345
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK+GL I + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 TVTLKTLGLAAVMAKAGLFIPAREPVEIPWFDQVLADIGDEQSLQQSLSTFSGHIRRIVR 405
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I++ S+SLVLLDE+GAGT+P EG+ L +++L+ A+ SLLT+ATTH+GELK LKY +
Sbjct: 406 ILAALNSRSLVLLDEVGAGTDPAEGSPLAIAILQYLADH-SLLTVATTHYGELKALKYRD 464
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
FENA +EFD+ L PTY++LWG+PGRS+A+ IA+RLGL +V AR G S EIN
Sbjct: 465 SRFENASVEFDDRTLSPTYRLLWGIPGRSNALTIAQRLGLNPEIVTEARNHLGGLSEEIN 524
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+VI +E + + EA L + + + TR L+ +R R++++ +
Sbjct: 525 QVIAGLEAQRREQESKAQEASQLLQQTEKFYTE-VSTRANSLQ----ERERELKRYQE-- 577
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ Q+ SA + V +R Q TK G++ T T
Sbjct: 578 --------QEIQKALLSAKAEINEVIRRLQA----------GTKTGRDAQKATEEL--TA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ + P T + V P VG+ V + + G+ V+ + P +EI ++
Sbjct: 618 IAERLLPKTEKTKV------------NYRPQVGERVRLPNLGQTAEVLAISPESDEISLR 665
Query: 829 VGNMKWIMKFTDI 841
G MK + I
Sbjct: 666 FGMMKMTLPLDQI 678
>gi|425439812|ref|ZP_18820127.1| MutS2 protein [Microcystis aeruginosa PCC 9717]
gi|389719875|emb|CCH96352.1| MutS2 protein [Microcystis aeruginosa PCC 9717]
Length = 789
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 250/793 (31%), Positives = 388/793 (48%), Gaps = 122/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A + + ++ ++SL LL +T +++
Sbjct: 5 ETLELLEWPRLCQHLATFAATKLG--AIAIRQLPLPESKEESLNLLCQTKEVYSLEQKLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + + A+ L E L + L LR I E D+ +
Sbjct: 63 SRLSFDGI--TDIGDALERAHLGGLLSGQELLNIATTLAGVR----RLRRLIDEQEDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ ++ + + I + +DEDG I D ASP L++ RGQ++++ ++Y+ +
Sbjct: 117 ----LKELVAEIRTYPEIEQEIHRCIDEDGRISDRASPQLREIRGQMKVIRERIYRKLQD 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R I A Q G++ +SS+G IEP S V ++
Sbjct: 173 IMQKQGGAIQEAVITQRSDRWVIPVKAAQKEQIPGIIHDTSSTGATFYIEPHSIVDQGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q R EE +L L+ + +++E +L +LD+ ARA YSL G P+
Sbjct: 233 LRQYRRLEQIEEEKILRQLSNLIAEAFEDLEYLLAIATRLDLATARARYSLWLEGNPPHF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANTE 408
+ SE TI L HPLL Q+H ++
Sbjct: 293 ------------------IDGSE---TITLRNLRHPLLWWQKHHEQ-------------- 317
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
GG VPI++ I + RV+ ITGPNTGGK
Sbjct: 318 -------GGEV-------------------------VPINVQITPEIRVVAITGPNTGGK 345
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK+GL I + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 TVTLKTLGLAALMAKAGLFIPAREPVEIPWFDQVLADIGDEQSLQQSLSTFSGHIRRIVR 405
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I++ S+SLVLLDE+GAGT+P EG+ L +++L+ A+ SLLT+ATTH+GELK LKY +
Sbjct: 406 ILAALNSRSLVLLDEVGAGTDPAEGSPLAIAILQYLADH-SLLTVATTHYGELKALKYRD 464
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
FENA +EFD+ L PTY++LWG+PGRS+A+ IA+RLGL +V AR G S EIN
Sbjct: 465 SRFENASVEFDDRTLSPTYRLLWGIPGRSNALTIAQRLGLSPEIVAEARNHLGGLSEEIN 524
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+VI +E + + EA L + + + TR L+ +R R++++ +
Sbjct: 525 QVIAGLEAQRREQESKAQEASQLLQQTEKFYTE-VSTRANSLQ----ERERELKRYQE-- 577
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ Q+ SA + V +R Q TK G++ T T
Sbjct: 578 --------QEIQKALLSAKAEINEVIRRLQA----------GTKTGRDAQKATEEL--TA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ + P T + V P VG+ V + + G+ V+ + P EEI ++
Sbjct: 618 IAERLLPKTEKTKV------------NYRPQVGERVRLPNLGQTAEVLAISPESEEISLR 665
Query: 829 VGNMKWIMKFTDI 841
G MK + I
Sbjct: 666 FGMMKMTLPLDQI 678
>gi|443646823|ref|ZP_21129501.1| mutS2 family protein [Microcystis aeruginosa DIANCHI905]
gi|159028850|emb|CAO90655.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443335652|gb|ELS50116.1| mutS2 family protein [Microcystis aeruginosa DIANCHI905]
Length = 789
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 249/793 (31%), Positives = 388/793 (48%), Gaps = 122/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A + + ++ ++SL LL +T +++
Sbjct: 5 ETLELLEWPRLCQHLATFAATKLG--AIAIRQLPLPESKEESLNLLCQTKEVYSLEQKLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ S + A+ L E L + L LR I E D+ +
Sbjct: 63 SRLSFDGI--SDIGDALERAHLGGLLSGQELLNIATTLAGVR----RLRRLIDEQEDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ ++ + + I + +DEDG I D ASP L++ RGQ+++++ ++Y+ +
Sbjct: 117 ----LKELVAEIRTYPEIEQEIHRCIDEDGRISDRASPQLREIRGQIKVIKERIYRKLQD 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R I A Q G++ +SS+G IEP S V ++
Sbjct: 173 IMQKQGGAIQEAVITQRSERWVIPVKAAQKEQIPGIIHDTSSTGATFYIEPHSIVDQGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q R EE +L L+ + +++E +L +LD+ ARA YSL G P
Sbjct: 233 LRQYRRQEQIEEEKILRQLSNLIAEAFEDLEYLLAIATRLDLATARARYSLWLEGNPPRF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANTE 408
+ SE TI L HPLL Q+H ++
Sbjct: 293 ------------------IDGSE---TITLRNLRHPLLWWQKHHEQ-------------- 317
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
GG +PI++ I + RV+ ITGPNTGGK
Sbjct: 318 -------GGEV-------------------------IPINVQITPEIRVVAITGPNTGGK 345
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK+GL I + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 TVTLKTLGLAALMAKAGLFIPAREPVEIPWFDQVLADIGDEQSLQQSLSTFSGHIRRIVR 405
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I++ S+SLVLLDE+GAGT+P EG+ L +++L+ A+ SLLT+ATTH+GELK LKY +
Sbjct: 406 ILAALNSRSLVLLDEVGAGTDPAEGSPLAIAILQYLADH-SLLTVATTHYGELKALKYQD 464
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
FENA +EFD+ L PTY++LWG+PGRS+A+ IA+RLGL +V AR G S EIN
Sbjct: 465 SRFENASVEFDDRTLSPTYRLLWGIPGRSNALTIAQRLGLNPEIVAEARNHLGGLSEEIN 524
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+VI +E + + EA L + + + TR L+ +R R++++ +
Sbjct: 525 QVIAGLEAQRREQESKAKEASQLLQQTEKFYTE-VSTRANSLQ----ERERELKRYQE-- 577
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ Q+ SA + V +R Q TK G++ T T
Sbjct: 578 --------QEIQKALLSAKAEINDVIRRLQ----------AGTKTGRDAQKATEEL--TA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ + P T + V P VG+ V + + G+ V+ + P +EI ++
Sbjct: 618 IAERLLPKTEKTKV------------NYRPQVGERVRLPNLGQTAEVLAISPESDEISLR 665
Query: 829 VGNMKWIMKFTDI 841
G MK + I
Sbjct: 666 FGMMKMTLPLDQI 678
>gi|428773368|ref|YP_007165156.1| MutS2 family protein [Cyanobacterium stanieri PCC 7202]
gi|428687647|gb|AFZ47507.1| MutS2 family protein [Cyanobacterium stanieri PCC 7202]
Length = 822
Score = 341 bits (874), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 253/822 (30%), Positives = 401/822 (48%), Gaps = 154/822 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+ R+LEW +LCH +S+F+ T LG A + +I +T ++ +LL++T ++ +
Sbjct: 5 ETFRLLEWQRLCHHLSTFSATKLG--AIASSHLTIPKTLSETQKLLEQTKEVYHIETSLN 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQ--LSLRAAIKEDADL 169
+ +G+ + A+ + L+ E LL + TL LR I++ D
Sbjct: 63 PNWSFSGI--HDIGDALERAKLGGILKGEE------LLNLATTLAGVRKLRRVIEDLEDS 114
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
L +++ L L + I +D+ G I + ASP L + R +++ L K+ Q +
Sbjct: 115 PT----LKELVESLRTFPELEQEIHYCIDDRGEITERASPQLGEIRQKIKGLRSKIQQTL 170
Query: 230 DMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSVI--EPLSAVPLN 287
+I+ N V+ R + A ++ +S GS + EP S + L
Sbjct: 171 QNIIQRNGNALQEPVVTQRGDRFVLPVKASHSGQISGIVHDTSTTGSTLYTEPKSIIDLG 230
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ +R + EE +L LTEK+ +E+E++L LD+ A+A YS+ G P
Sbjct: 231 NRLQTSRGQEKREEEKILRTLTEKVAEVWEELEQLLAIATALDLATAKARYSMWLEGNPP 290
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
Q + I L + HPLL+ Q K++
Sbjct: 291 QFVDFQSQE-------------------NITLRQLRHPLLIWQQKKE------------- 318
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
E VPID+ I TRV+ ITGPNTGG
Sbjct: 319 --------------------------------ESGAVVPIDVLIKSDTRVVAITGPNTGG 346
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT+G+ +MAK G+ I + + +PWFD V ADIGDEQSL Q+LSTFSGH+++I
Sbjct: 347 KTVTLKTIGITALMAKVGIFIPAKDPVLIPWFDQVLADIGDEQSLEQNLSTFSGHIRRII 406
Query: 528 NIIS---------------------QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 566
I+ S SLVLLDE+GAGT+P EG+A+ +++L+ AE
Sbjct: 407 RIMDALNGSTPIQNPDDDSPTVETQHGLSNSLVLLDEVGAGTDPTEGSAIAIAILKHLAE 466
Query: 567 SGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERL 626
+LLTIATTH+GELKTLKY++ FENA +EFD+V L+PTY++LWG+PGRS+AI IA+RL
Sbjct: 467 H-NLLTIATTHYGELKTLKYNDSRFENASVEFDDVSLQPTYRVLWGIPGRSNAIIIAQRL 525
Query: 627 GLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL---- 682
GLP V+ ++++L G S ++N++I E+E + + E +A+ L + ++ +
Sbjct: 526 GLPSDVIADSQELAGGFSQDVNQLIGELENQRREQEEKHKQAQDLLSKTERFYQEVEAKA 585
Query: 683 --LRTRRKILEHCASQRFRKVQK-ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQ 739
L+ R + L+ SQ+ + VQK + DA + ++ + ++ P+A + AQQ
Sbjct: 586 TSLQDRERDLK---SQQEQAVQKMLLDAKSQIAQVIKELQKKGNPTA--------QDAQQ 634
Query: 740 LRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPN 799
R + K+G D+ P Q R K + P
Sbjct: 635 ARE------NLEKIG---------------DRFLTPI-----------QKSRKKSSYKPK 662
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
VG+ V + S G+ V+ V+ + E++ + G MK ++ FTDI
Sbjct: 663 VGERVRILSLGQTAEVLDVDETAEQLSARFGMMKMVLPFTDI 704
>gi|425450195|ref|ZP_18830027.1| MutS2 protein [Microcystis aeruginosa PCC 7941]
gi|389769051|emb|CCI05979.1| MutS2 protein [Microcystis aeruginosa PCC 7941]
Length = 789
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 248/793 (31%), Positives = 389/793 (49%), Gaps = 122/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A + + ++ ++SL LL +T +++
Sbjct: 5 ETLELLEWPRLCQHLATFAATKLG--AIAIRQLPLPESKEESLNLLCQTKEVYSLEQKLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + + A+ L E L + L LR I E D+ +
Sbjct: 63 SRLSFDGI--TDIGDALERAHLGGLLSGQELLNIATTLAGVR----RLRRLIDEQEDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ ++ + + I + +DEDG I D ASP L++ RGQ++++ ++Y+ +
Sbjct: 117 ----LKELVAEIRTYPEIEQEIHRCIDEDGRISDRASPQLREIRGQMKVIRERIYRKLQD 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R I A Q G++ +SS+G IEP S V ++
Sbjct: 173 IMQKQGGAIQEAVITQRSDRWVIPVKAAQKEQIPGIIHDTSSTGATFYIEPHSIVDQGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q R EE +L L+ + +++E +L +LD+ ARA YSL G P+
Sbjct: 233 LRQYRRQEQIEEEKILRQLSNLIAEAFEDLEYLLAIATRLDLATARARYSLWLEGNPPHF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANTE 408
+ SE TI L HPLL Q+H ++
Sbjct: 293 ------------------IDGSE---TITLRNLRHPLLWWQKHHEQ-------------- 317
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
GG +PI++ I+ + RV+ ITGPNTGGK
Sbjct: 318 -------GGEV-------------------------IPINVQISPEIRVVAITGPNTGGK 345
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK+GL I + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 TVTLKTLGLAALMAKAGLFIPAREPVEIPWFDQVLADIGDEQSLQQSLSTFSGHIRRIVR 405
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I++ S+SLVLLDE+GAGT+P EG+ L +++L+ A+ SLLT+ATTH+GELK LKY +
Sbjct: 406 ILAALNSRSLVLLDEVGAGTDPAEGSPLAIAILQYLADH-SLLTVATTHYGELKALKYRD 464
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
FENA +EFD+ L PTY++LWG+PGRS+A+ IA+RLGL +V AR G S EIN
Sbjct: 465 SRFENASVEFDDRTLSPTYRLLWGIPGRSNALTIAQRLGLSAEIVAEARNHLGGLSEEIN 524
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+VI +E + + EA L + + + TR L+ +R R++++ +
Sbjct: 525 QVIAGLEAQRREQESKAKEASQLLQQTEKFYTE-VSTRANSLQ----ERERELKRYQE-- 577
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ Q+ SA + V +R Q TK G++ T T
Sbjct: 578 --------QEIQKALLSAKAEINDVIRRLQA----------GTKTGRDAQKATEEL--TA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ + P T + V P VG+ V + + G+ V+ + P +EI ++
Sbjct: 618 IAERLLPKTEKTKV------------NYRPQVGERVRLPNLGQTAEVLAISPESDEISLR 665
Query: 829 VGNMKWIMKFTDI 841
G MK + I
Sbjct: 666 FGMMKMTLPLDQI 678
>gi|425434478|ref|ZP_18814947.1| MutS2 protein [Microcystis aeruginosa PCC 9432]
gi|389676022|emb|CCH94894.1| MutS2 protein [Microcystis aeruginosa PCC 9432]
Length = 789
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 249/793 (31%), Positives = 389/793 (49%), Gaps = 122/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A + + ++ ++SL LL +T +++
Sbjct: 5 ETLELLEWPRLCQHLATFAATKLG--AIAIRQLPLPESKEESLNLLCQTKEVYSLEQKLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ S + A+ L E L + L LR I E D+ +
Sbjct: 63 SRLSFDGI--SDIGDALERGHLGGLLSGQELLNIATTLAGVR----RLRRLIDEQEDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ ++ + + I + +DEDG I D ASP L++ RGQ++++ ++Y+ +
Sbjct: 117 ----LKELVAEIRTYPEIEQEIHRCIDEDGRISDRASPQLREIRGQMKVIRERIYRKLQD 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R I A Q G++ +SS+G IEP S + ++
Sbjct: 173 IMQKQGGAIQEAVITQRSERWVIPVKASQKEQIPGIIHDTSSTGATFYIEPHSIIDQGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q R EE +L L+ + +++E +L +LD+ ARA YSL G P+
Sbjct: 233 LRQYRRLEQIEEEKILRQLSNLIAEAFEDLEYLLAIATRLDLATARARYSLWLEGNPPHF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANTE 408
+ SE TI L HPLL Q+H ++
Sbjct: 293 ------------------IDGSE---TITLRNLRHPLLWWQKHHEQ-------------- 317
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
GG +PI++ I+ + RV+ ITGPNTGGK
Sbjct: 318 -------GGEV-------------------------IPINVQISPEIRVVAITGPNTGGK 345
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK+GL I + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 TVTLKTLGLAALMAKAGLFIPAREPVEIPWFDQVLADIGDEQSLQQSLSTFSGHIRRIVR 405
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I++ S+SLVLLDE+GAGT+P EG+ L +++L+ A+ SLLT+ATTH+GELK LKY +
Sbjct: 406 ILAALNSRSLVLLDEVGAGTDPAEGSPLAIAILQYLADH-SLLTVATTHYGELKALKYRD 464
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
FENA +EFD+ L PTY++LWG+PGRS+A+ IA+RLGL +V AR G S EIN
Sbjct: 465 SRFENASVEFDDRTLSPTYRLLWGIPGRSNALTIAQRLGLSAEIVAEARNHLGGLSEEIN 524
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+VI +E + + EA L + + + TR L+ +R R++++ +
Sbjct: 525 QVIAGLEAQRREQESKAKEASQLLQQTEKFYTEV-STRANSLQ----ERERELKRYQE-- 577
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ Q+ SA + V +R Q TK GK+ T T
Sbjct: 578 --------QEIQKALLSAKAEINEVIRRLQA----------GTKTGKDAQKATEEL--TA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ + P T + V P VG+ V + + G+ V+ + P +EI ++
Sbjct: 618 IAERLLPKTEKTKV------------NYRPQVGERVRLPNLGQTAEVLAISPESDEISLR 665
Query: 829 VGNMKWIMKFTDI 841
G MK + I
Sbjct: 666 FGMMKMTLPLDQI 678
>gi|440751890|ref|ZP_20931093.1| mutS2 family protein [Microcystis aeruginosa TAIHU98]
gi|440176383|gb|ELP55656.1| mutS2 family protein [Microcystis aeruginosa TAIHU98]
Length = 789
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 249/793 (31%), Positives = 389/793 (49%), Gaps = 122/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A + + ++ ++SL LL +T +++
Sbjct: 5 ETLELLEWPRLCQHLATFAATKLG--AIAIRQLPLPESKEESLNLLCQTKEVYSLEQKLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + + A+ L E L + L LR I E D+ +
Sbjct: 63 SRLSFDGI--TDIGDALERAHLGGLLSGQELLNIATTLAGVR----RLRRLIDEQEDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ ++ + + I + +DEDG I D ASP L++ RGQ++++ ++Y+ +
Sbjct: 117 ----LKELVAEIRTYPEIEQEIHRCIDEDGRISDRASPQLREIRGQMKVIRERIYRKLQD 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R I A Q G++ +SS+G IEP S V ++
Sbjct: 173 IMQKQGGAIQEAVITQRSERWVIPVKAAQKEQIPGIIHDTSSTGATFYIEPHSIVDQGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q R EE +L L+ + +++E +L +LD+ ARA YSL G P+
Sbjct: 233 LRQYRRLEQIEEEKILRQLSNLIAEAFEDLEYLLAIATRLDLATARARYSLWLEGNPPHF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANTE 408
+ SE TI L HPLL Q+H ++
Sbjct: 293 ------------------IDGSE---TITLRNLRHPLLWWQKHHEQ-------------- 317
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
GG VPI++ I+ + RV+ ITGPNTGGK
Sbjct: 318 -------GGEV-------------------------VPINVQISPEIRVVAITGPNTGGK 345
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK+GL I + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 TVTLKTLGLAALMAKAGLFIPAREPVEIPWFDQVLADIGDEQSLEQSLSTFSGHIRRIVR 405
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I++ S+SLVLLDE+GAGT+P EG+ L +++L+ A+ SLLT+ATTH+GELK LKY +
Sbjct: 406 ILAALNSRSLVLLDEVGAGTDPAEGSPLAIAILQYLADH-SLLTVATTHYGELKALKYRD 464
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
FENA +EFD+ L PTY++LWG+PGRS+A+ IA+RLGL +V AR G S EIN
Sbjct: 465 SRFENASVEFDDRTLSPTYRLLWGIPGRSNALTIAQRLGLSAEIVAEARNHLGGLSEEIN 524
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+VI +E + + EA L + + + TR L+ +R R++++ +
Sbjct: 525 QVIAGLEAQRREQESKAQEASQLLQQTEKFYTE-VSTRANSLQ----ERERELKRYQE-- 577
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ Q+ SA + V +R Q TK G++ T T
Sbjct: 578 --------QEIQKALLSAKAEINDVIRRLQA----------GTKTGRDAQKATEEL--TA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ + P T + V P VG+ V + + G+ V+ + P +EI ++
Sbjct: 618 IAERLLPKTEKTKV------------NYRPQVGERVRLPNLGQTAEVLAISPESDEISLR 665
Query: 829 VGNMKWIMKFTDI 841
G MK + I
Sbjct: 666 FGMMKMTLPLDQI 678
>gi|425456967|ref|ZP_18836673.1| MutS2 protein [Microcystis aeruginosa PCC 9807]
gi|389801826|emb|CCI19076.1| MutS2 protein [Microcystis aeruginosa PCC 9807]
Length = 789
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 250/793 (31%), Positives = 387/793 (48%), Gaps = 122/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A + + ++ ++SL LL +T +++
Sbjct: 5 ETLELLEWPRLCQHLATFASTKLG--AIAIRQLPLPESKEESLNLLCQTKEVYSLEQKLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + + A+ L E L + L LR I E D+ +
Sbjct: 63 SRLSFDGI--TDIGDALERAHLGGLLSGQELLNIATTLAGVR----RLRRLIDEQEDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ ++ + + I + +DEDG I D ASP L++ RGQ++++ ++Y+ +
Sbjct: 117 ----LKELVAEIRTYPEIEQEIHRCIDEDGRISDRASPQLREIRGQMKVIRERIYRKLQD 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R I A Q G++ +SS+G IEP S V ++
Sbjct: 173 IMQKQGGAIQEAVITQRSERWVIPVKAAQKEQIPGIIHDTSSTGATFYIEPHSIVDQGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q R EE +L L+ + +++E +L +LD+ ARA YSL G P+
Sbjct: 233 LRQYRRQEQIEEEKILRQLSNLIAEAFEDLEYLLAIATRLDLATARARYSLWLEGNPPHF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANTE 408
+ SE TI L HPLL Q+H ++
Sbjct: 293 ------------------IDGSE---TITLRNLRHPLLWWQKHHEQ-------------- 317
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
GG VPI++ I + RV+ ITGPNTGGK
Sbjct: 318 -------GGEV-------------------------VPINVQITPEIRVVAITGPNTGGK 345
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK+GL I + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 TVTLKTLGLAALMAKAGLFIPAREPVEIPWFDQVLADIGDEQSLQQSLSTFSGHIRRIVR 405
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I+ S+SLVLLDE+GAGT+P EG+ L +++L+ A+ SLLT+ATTH+GELK LKY +
Sbjct: 406 ILGALNSRSLVLLDEVGAGTDPAEGSPLAIAILQYLADH-SLLTVATTHYGELKALKYRD 464
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
FENA +EFD+ L PTY++LWG+PGRS+A+ IA+RLGL +V AR G S EIN
Sbjct: 465 SRFENASVEFDDRTLSPTYRLLWGIPGRSNALTIAQRLGLSPEIVAEARNHLGGLSEEIN 524
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+VI +E + + EA L + + + TR L+ +R R++++ +
Sbjct: 525 QVIAGLEAQRREQESKAKEASQLLQQTEKFYTE-VSTRANSLQ----ERERELKRYQE-- 577
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ Q+ SA + V +R Q TK G++ T T
Sbjct: 578 --------QEIQKALLSAKAEINDVIRRLQ----------SGTKTGRDAQKATEEL--TA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ + P T + V P VG+ V + + G+ V+ + P EEI ++
Sbjct: 618 IAERLLPKTEKTKV------------NYRPQVGERVRLPNLGQTAEVLAISPESEEISLR 665
Query: 829 VGNMKWIMKFTDI 841
G MK + I
Sbjct: 666 FGMMKMTLPLDQI 678
>gi|425460157|ref|ZP_18839639.1| MutS2 protein [Microcystis aeruginosa PCC 9808]
gi|389827152|emb|CCI21729.1| MutS2 protein [Microcystis aeruginosa PCC 9808]
Length = 789
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 250/793 (31%), Positives = 388/793 (48%), Gaps = 122/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A + + ++ ++SL LL +T +++
Sbjct: 5 ETLELLEWPRLCQHLATFAATKLG--AIAIRQLPLPESKEESLNLLCQTKEVYSLEQKLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ S + A+ L E L + L LR I E D+ +
Sbjct: 63 SRLSFDGI--SDIGDALERAHLGGLLSGQELLNIATTLAGVR----RLRRLIDEQEDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ ++ + + I + +DEDG I D ASP L++ RGQ++++ ++Y+ +
Sbjct: 117 ----LKELVAEIRTYPEIEQEIHRCIDEDGRISDRASPQLREIRGQMKVIRERIYRKLQD 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R I A Q G++ +SS+G IEP S V ++
Sbjct: 173 IMQKQGGAIQEAVITQRSERWVIPVKASQKEQIPGIIHDTSSTGATFYIEPHSIVDQGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q R EE +L L+ + +++E +L +LD+ ARA YSL G P+
Sbjct: 233 LRQYRRLEQIEEEKILRQLSNLIAEAFEDLEYLLAIATRLDLATARARYSLWLEGNPPHF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANTE 408
+ SE TI L HPLL Q+H ++
Sbjct: 293 ------------------IDGSE---TITLRNLRHPLLWWQKHHEQ-------------- 317
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
GG VPI++ I + RV+ ITGPNTGGK
Sbjct: 318 -------GGEV-------------------------VPINVQITPEIRVVAITGPNTGGK 345
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK+GL I + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 TVTLKTLGLAALMAKAGLFIPAREPVEIPWFDQVLADIGDEQSLQQSLSTFSGHIRRIVR 405
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I++ S+SLVLLDE+GAGT+P EG+ L +++L+ A+ SLLT+ATTH+GELK LKY +
Sbjct: 406 ILAALNSRSLVLLDEVGAGTDPAEGSPLAIAILQYLADH-SLLTVATTHYGELKALKYRD 464
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
FENA +EFD+ L PTY++LWG+PGRS+A+ IA+RLGL +V AR G S EIN
Sbjct: 465 SRFENASVEFDDRTLSPTYRLLWGIPGRSNALTIAQRLGLSPEIVAEARNHLGGLSEEIN 524
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+VI +E + + EA L + + + TR L+ +R R++++ +
Sbjct: 525 QVIAGLEAQRREQESKAKEASQLLQQTEKFYTE-VSTRANSLQ----ERERELKRYQE-- 577
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ Q+ SA + V +R Q TK G++ T T
Sbjct: 578 --------QEIQKALLSAKAEINDVIRRLQA----------GTKTGRDAQKATEEL--TA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ + P T + V P VG+ V + + G+ V+ + P +EI ++
Sbjct: 618 IAERLLPKTEKTKV------------NYRPQVGERVRLPNLGQTAEVLAISPESDEISLR 665
Query: 829 VGNMKWIMKFTDI 841
G MK + I
Sbjct: 666 FGMMKMTLPLDQI 678
>gi|186680652|ref|YP_001863848.1| recombination and DNA strand exchange inhibitor protein [Nostoc
punctiforme PCC 73102]
gi|186463104|gb|ACC78905.1| MutS2 family protein [Nostoc punctiforme PCC 73102]
Length = 805
Score = 339 bits (869), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 257/810 (31%), Positives = 383/810 (47%), Gaps = 138/810 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG AT + I + S +LL++T +++ +
Sbjct: 5 ETLELLEWHRLCQHLATFAATKLG--ATAARNLKIPDSQTQSEQLLEQTKEVYQLESRLT 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + ++ R+ L +E LA+ L + SLR I DL I
Sbjct: 63 TGLSFEGI--QDIGDSLERAERSGVLAGDELLAIATTLAGAR----SLRRVIDNQEDLPI 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
LT+++ L L + I + +DE + D AS L + R ++ L ++ Q +
Sbjct: 117 ----LTELVADLRTYPELEQEIHRCIDERAQVTDRASQKLGEIRTDLRRLRSQITQKLQN 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ ++ ++ R I A Q + G++ +S+SG +EP S VPL ++
Sbjct: 173 ILQAKSGAVQEQLITQRSDRFVIPVKAPQKDAIPGIVHDTSTSGATLYVEPNSVVPLGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q EE + LTE++ ++E++L LD+ AR+ YS G P
Sbjct: 233 LRQIIRKEQAEEEAIRRILTEQVAAVKPDLERLLAIATTLDLATARSRYSYWLGANPPRF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQAWKDLESANT 407
QD + TI L HPLL+ QQH+Q
Sbjct: 293 IQRQDSE-------------------TITLRNLRHPLLVWQQQHEQ-------------- 319
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV-PIDIFIARKTRVLVITGPNTG 466
PV P+D+ I RV+ ITGPNTG
Sbjct: 320 ----------------------------------GQPVVPVDLLINPLIRVVTITGPNTG 345
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GLA +MAK GL + + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 GKTVTLKTLGLAALMAKVGLFVPAREPVEIPWFDKVLADIGDEQSLQQSLSTFSGHIRRI 405
Query: 527 GNII---------------SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLL 571
I+ QSLVLLDE+GAGT+P+EG+AL ++LL+ A L
Sbjct: 406 SRILEALGNGESGSEDGEKEMPNPQSLVLLDEVGAGTDPVEGSALAIALLQYLANHAQ-L 464
Query: 572 TIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGI 631
TIATTH GELK LKY ++ FENA +EFDE L PTY++LWG+PGRS+A+ IA RLGL
Sbjct: 465 TIATTHFGELKALKYEDERFENASVEFDESTLSPTYRLLWGIPGRSNALTIALRLGLKPE 524
Query: 632 VVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILE 691
VVQ A+ G A+ E+N+VI +E + + EA+ L + L+K + + E
Sbjct: 525 VVQQAKTQVGEATDEVNQVIAGLEAQRRRQETKAAEAQSLLQQAERLYKEVSAKAASLEE 584
Query: 692 HCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCT 751
+S R Q+I + QQ A + V +R Q+ P+A ++ T
Sbjct: 585 RESS--LRASQEI-------------AVQQAIVQAKGEIAQVIRRLQKGTPTAQEAQQAT 629
Query: 752 KVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGK 811
NQ + ++ PAT + + K +P VGD V + G+
Sbjct: 630 N-ALNQ-----------IGQLYQPATPA-----------KPKAGFMPKVGDRVRIPKLGQ 666
Query: 812 KGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
VI E+ V+ G MK +K D+
Sbjct: 667 IADVIAAPDEDGELSVRFGLMKMTVKLQDV 696
>gi|390440129|ref|ZP_10228481.1| MutS2 protein [Microcystis sp. T1-4]
gi|389836495|emb|CCI32605.1| MutS2 protein [Microcystis sp. T1-4]
Length = 789
Score = 339 bits (869), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 249/793 (31%), Positives = 388/793 (48%), Gaps = 122/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++F T LG A + + ++ ++SL LL +T +++
Sbjct: 5 ETLELLEWPRLCQHLATFTATKLG--AIAIRQLPLPESKEESLNLLCQTKEVYSLEQKLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + + A+ L E L + L LR I E D+ +
Sbjct: 63 SRLSFDGI--TDIGDALERAHLGGLLSGQELLNIATTLAGVR----RLRRLIDEQEDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ ++ + + I + +DEDG I D ASP L++ RGQ++++ ++Y+ +
Sbjct: 117 ----LKELVAEIRTYPEIEQEIHRCIDEDGRISDRASPQLREIRGQMKVIRERIYRKLQD 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R + A Q G++ +SS+G IEP S V ++
Sbjct: 173 IMQKQGGAIQEAVITQRSERWVLPVKAAQKEQIPGIIHDTSSTGATFYIEPHSIVDQGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q R EE +L L+ + +++E +L +LD+ ARA YSL G P+
Sbjct: 233 LRQYRRLEQIEEEKILRQLSNLIAEAFEDLEYLLAIATRLDLATARARYSLWLEGNPPHF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANTE 408
+ SE TI L HPLL Q+H ++
Sbjct: 293 ------------------IDGSE---TITLRNLRHPLLWWQKHHEQ-------------- 317
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
GG VPI++ I+ + RV+ ITGPNTGGK
Sbjct: 318 -------GGEV-------------------------VPINVQISPEIRVVAITGPNTGGK 345
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK+GL I + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 TVTLKTLGLAALMAKAGLFIPAREPVEIPWFDQVLADIGDEQSLQQSLSTFSGHIRRIVR 405
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I++ S+SLVLLDE+GAGT+P EG+ L +++L+ A+ SLLT+ATTH+GELK LKY +
Sbjct: 406 ILAALNSRSLVLLDEVGAGTDPAEGSPLAIAILQYLADH-SLLTVATTHYGELKALKYQD 464
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
FENA +EFD+ L PTY++LWG+PGRS+A+ IA+RLGL +V AR G S EIN
Sbjct: 465 SRFENASVEFDDRTLSPTYRLLWGIPGRSNALTIAQRLGLNPEIVAEARNHLGGLSEEIN 524
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+VI +E + + EA L + + + TR L+ +R R++++ +
Sbjct: 525 QVIAGLEAQRREQESKAQEASQLLQQTEKFYTEV-STRANSLQ----ERERELKRYQE-- 577
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ Q+ SA + V +R Q TK GK+ T T
Sbjct: 578 --------QEIQKALLSAKAEINEVIRRLQA----------GTKTGKDAQKATEEL--TA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ + P T + V P VG+ V + + G+ V+ + P EEI ++
Sbjct: 618 IAERLLPKTEKTKV------------NYRPQVGERVRLPNLGQTAEVLAISPESEEISLR 665
Query: 829 VGNMKWIMKFTDI 841
G MK + I
Sbjct: 666 FGMMKMTLPLDQI 678
>gi|158336591|ref|YP_001517765.1| recombination and DNA strand exchange inhibitor protein
[Acaryochloris marina MBIC11017]
gi|158306832|gb|ABW28449.1| MutS2 family protein [Acaryochloris marina MBIC11017]
Length = 794
Score = 339 bits (869), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 260/809 (32%), Positives = 385/809 (47%), Gaps = 144/809 (17%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
+V ++L +LEW++LC +S+FA T LG A + I T + S LL +T +++
Sbjct: 2 IVEKTLELLEWERLCQHLSTFAATKLGVAAAIE--LPIPDTVEASETLLQQTQEVYDLET 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
+L G+ +++A+ +R LR E L V L S L+ + +
Sbjct: 60 QLLTALTFEGI--HDIRAALVRSQRQGILRGEELLQVATTLLGSRNLRRLI--------N 109
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPAL-------KQSRGQVQ-- 219
Y L Q++ L L + I +DE G + D AS L +Q R VQ
Sbjct: 110 RYPELTSLNQLVADLRTYPELEQEIRHCIDEQGEVADRASEKLMGIRERQRQVRNDVQTI 169
Query: 220 ---MLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGI 274
+L+RK L + LI +N R + A Q + G++ +S+SG
Sbjct: 170 LQRILQRKGAALQERLITQRSN------------RFVVPVKAPQKDAVPGIVHDASTSGA 217
Query: 275 GSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNA 334
IEP + V LN+ L+Q E + ALTEK+ ++++ +L + +D+ A
Sbjct: 218 TLYIEPKATVELNNRLRQLTRQEQAEAEAIRQALTEKVAEVHEDLDALLQIVTLVDLATA 277
Query: 335 RATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHK 392
RA YS P + R+ T+ L + HPLL+ QQH+
Sbjct: 278 RARYSYWLEANRPRF-----VNRAAD---------------TLTLRRLRHPLLVWQQQHE 317
Query: 393 QKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA 452
Q + V ID+ I
Sbjct: 318 QGPE-----------------------------------------------VVAIDVTIQ 330
Query: 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSL 512
+ RV+ ITGPNTGGKT+ LKT+GLA +MAK GL + + E ++PWFD V ADIGDEQSL
Sbjct: 331 PQIRVVAITGPNTGGKTVTLKTLGLATLMAKVGLFVPAQEPVELPWFDQVLADIGDEQSL 390
Query: 513 SQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLT 572
QSLSTFSGH+++I II+ T QSLVLLDE+GAGT+PLEG+AL ++LL A+ LT
Sbjct: 391 QQSLSTFSGHIRRIQEIIAALTDQSLVLLDEVGAGTDPLEGSALAIALLRYLADQAQ-LT 449
Query: 573 IATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIV 632
IATTH GELK LKY+++ FENA +EFD+ L+PTY++LWG+PGRS+A+ IA+RLGL V
Sbjct: 450 IATTHFGELKALKYTDNRFENASVEFDDATLQPTYRLLWGIPGRSNALIIAQRLGLNEQV 509
Query: 633 VQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEH 692
+ A+ + ++N+VI +E + Q A L + LH+ + + +
Sbjct: 510 IAQAQAQMDGETDDVNQVIAGLETERRQQETKAQAAAQLLQSTEQLHEQVAKKASDL--K 567
Query: 693 CASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTK 752
Q+ R+ Q+ K+ Q+ A QA + V + QQ SA + T+
Sbjct: 568 VREQKLRQQQE-------------KAIQEEIRRAKQAIAQVIRDLQQQPKSAPAAQVATE 614
Query: 753 VGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKK 812
+ + + T K P P VGD V + S G+K
Sbjct: 615 --RLEKIANQRLPSRTKPKAPPPKGFQ------------------PQVGDRVRIPSIGQK 654
Query: 813 GTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
VIK+ P+ E+VV+ G MK +K T+I
Sbjct: 655 ADVIKITPTN-ELVVKFGMMKMTVKPTEI 682
>gi|161353751|ref|NP_484093.2| recombination and DNA strand exchange inhibitor protein [Nostoc sp.
PCC 7120]
Length = 798
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 251/802 (31%), Positives = 386/802 (48%), Gaps = 129/802 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +S+FA T LG A+L I + S +LL++T +++ +
Sbjct: 5 ETLELLEWYRLCQHLSTFAATKLGAIASLH--LQIPASQAASEQLLEQTKEVYQLESRLA 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + A+ L +E LA+ L + +LR I D+ I
Sbjct: 63 SGLSFEGI--HDIGDALERSELQGILGGDELLAIATTLAGAR----NLRRIIDNQEDIPI 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
LT+++ +L L + I + +DE G + D AS L R +++ L ++ Q +
Sbjct: 117 ----LTELVAELRTYPELEQEIHRCIDERGQVTDRASTKLGDIRTELRKLRSQITQKLQN 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ ++N ++ R I A Q + G++ +S+SG IEP S VP+ ++
Sbjct: 173 ILQVKSNAVQEQLITQRGDRFVIPVKAPQKDAIPGIVHDTSTSGATLYIEPNSVVPMGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q EE + ALTEK+ ++E++L + LD+ ARA YSL P
Sbjct: 233 LRQTIRKEQAEEEAIRRALTEKVAAVKPDLERLLAIVTTLDMATARARYSLWLKANPPRF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQAWKDLESANT 407
Q+ + I L + +HPLL+ QQH+Q
Sbjct: 293 IDRQEQE-------------------IITLRQLHHPLLVWQQQHEQ-------------- 319
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
G+A +P+D+ I+ RV+ ITGPNTGG
Sbjct: 320 ---------GHAV------------------------IPVDLLISPHIRVVTITGPNTGG 346
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT+GLA +MAK GL + + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 347 KTVTLKTLGLAALMAKVGLFVPAREPVEMPWFDQVLADIGDEQSLQQSLSTFSGHIRRIS 406
Query: 528 NIISQ--------STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579
I++ T SLVLLDE+GAGT+P EG+AL ++LL+ A+ L T+ATTH G
Sbjct: 407 RILNALGTGEQDLETPNSLVLLDEVGAGTDPAEGSALAIALLQYLADHAQL-TVATTHFG 465
Query: 580 ELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 639
ELK LKY + FENA +EFD+ L PTY++LWG+PGRS+A+ IA RLGL VV+ A+
Sbjct: 466 ELKALKYEDQRFENASVEFDDATLSPTYRLLWGIPGRSNALAIALRLGLKAEVVEQAKTQ 525
Query: 640 YGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFR 699
G A+ E+N VI +E + + EA+ L + L+K + + E Q +
Sbjct: 526 VGEATDEVNLVIAGLEAQRRRQETKAAEAQKILQQAERLYKEVSNKAAALQER--EQSLK 583
Query: 700 KVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHV 759
Q+I+ AI +QA+ + K ++L+ + + + N H
Sbjct: 584 ASQEIAVQQAI----------------TQAKGEIAKVIRRLQQGTATAQDAQQATNNLHQ 627
Query: 760 LTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVE 819
+ +Q K + +P VGD + +S FG+ V+
Sbjct: 628 IAQKYQPAPPPKAKPGF--------------------VPKVGDRIRISQFGQTADVLTAP 667
Query: 820 PSKEEIVVQVGNMKWIMKFTDI 841
E+ V+ G MK +K DI
Sbjct: 668 DEDGELTVRFGIMKMTVKLEDI 689
>gi|75908863|ref|YP_323159.1| recombination and DNA strand exchange inhibitor protein [Anabaena
variabilis ATCC 29413]
gi|75702588|gb|ABA22264.1| MutS 2 protein [Anabaena variabilis ATCC 29413]
Length = 798
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 252/805 (31%), Positives = 393/805 (48%), Gaps = 135/805 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +S+FA T LG A+L I + S +LL++T +++ +
Sbjct: 5 ETLELLEWYRLCQHLSTFAATKLGAIASLH--LQIPASQAASEQLLEQTKEVYQLESRLA 62
Query: 112 CSLDLTGV-DL--SLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
L G+ D+ SL +S ++ + L +E LA+ L + +LR I D
Sbjct: 63 SGLSFEGIQDIGDSLERSELQGI-----LAGDELLAIATTLAGAR----NLRRIIDNQED 113
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
+ I LT+++ +L L + I + +DE G + D AS L R +++ L ++ Q
Sbjct: 114 IPI----LTELVAELRTYPELEQEIHRCIDERGQVTDRASTKLGDIRTELRKLRSQITQK 169
Query: 229 MDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPL 286
+ +++ ++N ++ R I A Q + G++ +S+SG IEP S VP+
Sbjct: 170 LQNILQVKSNAVQEQLITQRGDRFVIPVKAPQKDAIPGIVHDTSTSGATLYIEPNSVVPM 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
++L+Q EE + ALTEK+ ++E++L + LD+ ARA YSL
Sbjct: 230 GNQLRQTIRKEQAEEEAIRRALTEKVAAVKPDLERLLAIVTTLDMATARARYSLWLKANP 289
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQAWKDLES 404
P Q+ + I L + +HPLL+ QQH+Q
Sbjct: 290 PRFIDRQEQE-------------------IITLRQLHHPLLVWQQQHEQ----------- 319
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
G+A +P+D+ I+ RV+ ITGPN
Sbjct: 320 ------------GHAV------------------------IPVDLLISPHIRVVTITGPN 343
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKT+GLA +MAK GL + + E ++PWFD V ADIGDEQSL QSLSTFSGH++
Sbjct: 344 TGGKTVTLKTLGLAALMAKVGLFVPAREPVEIPWFDQVLADIGDEQSLQQSLSTFSGHIR 403
Query: 525 QIGNIIS--------QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 576
+I I++ + QSLVLLDE+GAGT+P EG+AL ++LL+ A+ LT+ATT
Sbjct: 404 RISRILNALGTGDKEEYRPQSLVLLDEVGAGTDPAEGSALAIALLQYLADHAQ-LTVATT 462
Query: 577 HHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 636
H GELK LKY + FENA +EFD+ L PTY++LWG+PGRS+A+ IA RLGL VV+ A
Sbjct: 463 HFGELKALKYEDQRFENASVEFDDATLSPTYRLLWGIPGRSNALAIALRLGLKAEVVEQA 522
Query: 637 RQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQ 696
+ G A+ E+N VI +E + + EA+ L + L+K + + E Q
Sbjct: 523 KTQVGEATDEVNLVIAGLEAQRRRQETKAAEAQKILQQAERLYKEVSNKAAALQER--EQ 580
Query: 697 RFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKN 756
R Q+++ AI +QA+ + K ++L+ + + + N
Sbjct: 581 SLRASQEVAVQQAI----------------TQAKGEIAKVIRRLQQGTATAQDAQQATNN 624
Query: 757 QHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVI 816
+ + +Q K + +P +GD + +S FG+ V+
Sbjct: 625 LNQIAQKYQPAPPPKAKPGF--------------------VPKIGDRIRISQFGQTADVL 664
Query: 817 KVEPSKEEIVVQVGNMKWIMKFTDI 841
E+ V+ G MK +K DI
Sbjct: 665 TAPDEDGELTVRFGIMKMTVKLEDI 689
>gi|359461621|ref|ZP_09250184.1| recombination and DNA strand exchange inhibitor protein
[Acaryochloris sp. CCMEE 5410]
Length = 794
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 259/808 (32%), Positives = 386/808 (47%), Gaps = 142/808 (17%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
+V ++L +LEW++LC +S+FA T LG A + I T + S LL +T +++
Sbjct: 2 IVEKTLELLEWERLCQHLSTFAATKLGVAAAIE--LPIPTTVEGSETLLQQTQEVYDLET 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
+L G+ +++A+ +R L E L V L S L+ + +
Sbjct: 60 QLLTALTFEGI--HDIRAALVRSQRQGILSGEELLQVATTLLGSRNLRRLI--------N 109
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPAL-------KQSRGQVQ-- 219
Y + L Q++ L L + I +DE G + D AS L +Q R VQ
Sbjct: 110 RYPELVSLNQLVADLRTYPELEQEIRHCIDEQGEVADRASEKLMVIRERQRQVRNDVQTI 169
Query: 220 ---MLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGI 274
+L+RK L + LI ++ R + A Q + G++ +S+SG
Sbjct: 170 LQRILQRKGAALQERLITQRSD------------RFVVPVKAPQKDAVPGIVHDASTSGA 217
Query: 275 GSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNA 334
IEP + V LN+ L+Q E + ALTEK+ ++++ +L + +D+ A
Sbjct: 218 TLYIEPKATVELNNRLRQLTRQEQAEAEAIRQALTEKVAEVQEDLDALLQIVTAVDLATA 277
Query: 335 RATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQ 393
RA YS G P Q + R+ T+ L + HPLL+ QQH +
Sbjct: 278 RARYSYWLGANRP-----QFVNRAAE---------------TLTLRRLRHPLLVWQQHHE 317
Query: 394 KTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIAR 453
+ + V ID+ I
Sbjct: 318 QGPEV----------------------------------------------VAIDVTIQP 331
Query: 454 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 513
+ RV+ ITGPNTGGKT+ LKT+GLA +MAK GL + + E ++PWFD V ADIGDEQSL
Sbjct: 332 EIRVVAITGPNTGGKTVTLKTLGLATLMAKVGLFVPAQEPVELPWFDQVLADIGDEQSLQ 391
Query: 514 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 573
QSLSTFSGH+++I II+ T QSLVLLDE+GAGT+PLEG+AL ++LL A+ LTI
Sbjct: 392 QSLSTFSGHIRRIQEIIAALTDQSLVLLDEVGAGTDPLEGSALAIALLRYLADQAQ-LTI 450
Query: 574 ATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVV 633
ATTH GELK LKY++ FENA +EFD+ L+PTY++LWG+PGRS+A+ IA+RLGL V+
Sbjct: 451 ATTHFGELKALKYTDARFENASVEFDDATLQPTYRLLWGIPGRSNALIIAQRLGLNEQVI 510
Query: 634 QNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHC 693
A + ++N+VI +E + Q A L + LH+ + + +
Sbjct: 511 AQALAQMDGETDDVNQVIAGLETERRQQETRAQAAAKLLQSTEQLHQQVAKKASDL--KV 568
Query: 694 ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKV 753
Q+ R+ Q+ K+ Q+ A QA + V + QQ SA + T+
Sbjct: 569 REQKLRQQQE-------------KAIQEEIRRAKQAIAQVIRDLQQQPKSAPAAQVATE- 614
Query: 754 GKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKG 813
+ + + + T K P P VGD V + S G+K
Sbjct: 615 -RLEKIASQRLPSRTKPKAPPPTGFQ------------------PQVGDRVRIPSIGQKA 655
Query: 814 TVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
VIK+ P+ E+VVQ G MK +K T++
Sbjct: 656 DVIKITPTN-ELVVQFGMMKMTVKPTEV 682
>gi|427708044|ref|YP_007050421.1| MutS2 protein [Nostoc sp. PCC 7107]
gi|427360549|gb|AFY43271.1| MutS2 protein [Nostoc sp. PCC 7107]
Length = 796
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 258/804 (32%), Positives = 396/804 (49%), Gaps = 135/804 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A+ +Q+ S +LL +T +++ +
Sbjct: 5 ETLELLEWHRLCQHLATFAATKLGAIASTNLQIPTSQSV--SEQLLAQTKEVYQLESRLA 62
Query: 112 CSLDLTGV-DL--SLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
L G+ D+ S+ ++ +R + L +E LA+ L + +LR I D
Sbjct: 63 TGLSFDGIQDIGDSIERAELRGI-----LAGDELLAIATTLAGAR----NLRRVIDNQED 113
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
+ LT ++ L L + I + +DE G + D AS L + R ++ L ++ Q
Sbjct: 114 TPV----LTDLVADLRTYPELEQEIHRCIDERGIVADRASQKLGEIRDDLRRLRSQINQK 169
Query: 229 MDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPL 286
+ +++ ++N ++ R I A + G++ SS+SG+ +EP S VP+
Sbjct: 170 LHNILQAKSNAVQEQLITQRGDRFVIPVKASHKDAIPGIVHDSSTSGVTLYVEPSSIVPM 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
++L+Q EE V LTE++ ++E++L + LD+ AR+ YS
Sbjct: 230 GNQLRQTLKREQAEEEAVRRILTEQVAAVTPDLERLLAIVTTLDLAAARSRYSYWLKANP 289
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQAWKDLES 404
P + E + + L + HPLL+ QQH+Q
Sbjct: 290 PRFI-------------------NREEQEIVTLRQLRHPLLIWQQQHEQ----------- 319
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
G++ +P+D+ I+ +V+ ITGPN
Sbjct: 320 ------------GHSV------------------------IPVDLLISPHIKVVTITGPN 343
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKT+GLA +MAK GL I + E ++PWFD + ADIGDEQSL QSLSTFSGH++
Sbjct: 344 TGGKTVTLKTLGLAALMAKVGLFIPAREPVEMPWFDQILADIGDEQSLQQSLSTFSGHIR 403
Query: 525 QIGNIIS------QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578
+I I++ ++ SLVLLDE+GAGT+P EG+AL ++LL+ AE L TIATTH
Sbjct: 404 RISRILNALEHEVENQPNSLVLLDEVGAGTDPAEGSALAIALLQHLAEHAQL-TIATTHF 462
Query: 579 GELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
GELK LKY + FENA +EFDE L PTY++LWG+PGRS+A+ IA RLGL VV+NA+
Sbjct: 463 GELKALKYEDARFENASVEFDEATLSPTYRLLWGIPGRSNALAIALRLGLKPEVVENAKT 522
Query: 639 LYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRF 698
G AS E+N+VI +E + + EA+ L + L+K ++ + AS
Sbjct: 523 QVGEASDEVNQVIAGLEAQRRRQETKAAEAQKLLQQAERLYK-------EVSDKAASLEE 575
Query: 699 R-KVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
R K ++S A+ QQ A + V +R QQ P+A + T NQ
Sbjct: 576 REKSLRVSQEVAV---------QQAIAQAKGEIAQVIRRLQQGTPTAQDAQQATN-ALNQ 625
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
+T +Q PA A+ P+V +P VGD + +S FG+ V+
Sbjct: 626 --ITQKYQ---------PAAAAK---------PKVGF--MPKVGDRIRISQFGQTAEVLT 663
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
E+ V+ G MK +K DI
Sbjct: 664 APDEDGELNVRFGIMKMTVKLPDI 687
>gi|434407615|ref|YP_007150500.1| MutS2 family protein [Cylindrospermum stagnale PCC 7417]
gi|428261870|gb|AFZ27820.1| MutS2 family protein [Cylindrospermum stagnale PCC 7417]
Length = 814
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 251/819 (30%), Positives = 384/819 (46%), Gaps = 147/819 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +S+FA T LG A + I ++ +S +LL +T +++ +
Sbjct: 5 ETLELLEWPRLCQHLSTFAATKLG--AIAARQLKIPESQAESEQLLAQTKEVYQLESRLT 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + ++ R+ L +E LA+ L + +LR I DL I
Sbjct: 63 PGLSFEGI--QDIGDSLERAERSGILTGDELLAIATTLAGAR----NLRRVIDNQEDLPI 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ L L + I + +DE + D AS L + R ++ L ++ Q +
Sbjct: 117 ----LNELVADLRTYPELEQEIHRCIDERAQVTDRASQKLGEIRLDLRRLRSQITQKLQN 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+I+ ++ ++ R I A Q + G++ +S+SG +EP S VP+ ++
Sbjct: 173 IIQAKSGAVQEQLITQRGDRFVIPVKAPQKDAIPGIVHDTSTSGATLYVEPHSVVPIGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q EE + ALTE++ ++E++L LD+ A++ YS G P
Sbjct: 233 LRQVIRKEQTEEEAIRRALTEQVAAVKPDLERLLAIATSLDLATAKSRYSFWIGANPPRF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQAWKDLESANT 407
QD + I L HPLL+ QQH+Q
Sbjct: 293 IQRQDQE-------------------IINLRHLRHPLLVWQQQHEQ-------------- 319
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV-PIDIFIARKTRVLVITGPNTG 466
PV P+D+FI+ + RV+ ITGPNTG
Sbjct: 320 ----------------------------------GQPVVPVDLFISPQIRVVTITGPNTG 345
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GLA +MAK GL + + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 GKTVTLKTLGLAALMAKVGLFVPAREPVEIPWFDKVLADIGDEQSLQQSLSTFSGHIRRI 405
Query: 527 GNIISQ------------------------STSQSLVLLDEIGAGTNPLEGTALGMSLLE 562
I+ ++SLVLLDE+GAGT+P+EG+AL ++LL+
Sbjct: 406 SRILEALGDNSSVTGNEEDSEQLPITHYPLPITKSLVLLDEVGAGTDPVEGSALAIALLQ 465
Query: 563 AFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINI 622
A LTIATTH GELK LKY N+ FENA +EFDE L PTY++LWG+PGRS+A+ I
Sbjct: 466 YLANHAQ-LTIATTHFGELKALKYENERFENASVEFDESTLSPTYRLLWGIPGRSNALTI 524
Query: 623 AERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
A RLGL V++ A+ G A+ E+N VI +E + + EA+ L + L+K +
Sbjct: 525 ALRLGLKPEVIEQAKTQVGEATDEVNLVIAGLEAQRRRQETKAAEAQDLLRQAEILYKEV 584
Query: 683 LRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+ E K ++S A+ QQ SA + V +R QQ P
Sbjct: 585 SAKAADLQER------EKALRVSQEVAV---------QQAIASAKSEIAQVIRRLQQGTP 629
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGD 802
+A ++ T NQ + + PA P+ K +P VGD
Sbjct: 630 TAQEAQQATN-ALNQ-----------IAQKSQPAP-----------PPKAKIAFMPKVGD 666
Query: 803 LVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ + G+ V+ E+ V+ G MK +++ D+
Sbjct: 667 RIRIPKLGQTAEVLTAPDEDGELTVRFGIMKMMVQLADV 705
>gi|428215373|ref|YP_007088517.1| MutS2 family protein [Oscillatoria acuminata PCC 6304]
gi|428003754|gb|AFY84597.1| MutS2 family protein [Oscillatoria acuminata PCC 6304]
Length = 846
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 252/798 (31%), Positives = 387/798 (48%), Gaps = 124/798 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A I T + +L LL +T E++ G
Sbjct: 43 ETLELLEWPRLCQHLATFAGTKLG--AMAAGDLQIPDTLEQTLVLLAQTQEVYELENQGL 100
Query: 112 CSLDLTGV-DL--SLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
+L G+ D+ SL ++ + + L E LA+ L + LR I +
Sbjct: 101 TTLSFDGIHDIGDSLERADLHGI-----LSAEELLAIATTLSGAR----QLRRTIDDHPQ 151
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L + L +++ L + + I + +D+ + D AS L + R + + + ++YQ
Sbjct: 152 LSV----LNRLVADLRTYPEIEQEIHRCIDDRAQVADRASTRLGEIRQRQRTVRDQIYQK 207
Query: 229 MDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLLSSS-SGIGSVIEPLSAVPL 286
+ +++ +N ++ R I + Q + G++ SS SG +EP S V L
Sbjct: 208 LQSILQRHSNAVQEQLITKRSDRFVIPVKSPQKDAIPGIVHDSSMSGATLYVEPHSVVEL 267
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N++ + EE +L ALT K+ ++++E++L + LD+ ARA YS
Sbjct: 268 NNKARVLLREEKAEEEAILRALTAKITEVVEDLERLLAIVTILDLATARARYSYWLNANP 327
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQAWKDLES 404
P ++ E TI L + HPLL+ QQH+Q
Sbjct: 328 PTF------------------INRGEEGQTITLRQLRHPLLIWQQQHEQ----------- 358
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
GNA VPID+ + + +V+ ITGPN
Sbjct: 359 ------------GNAV------------------------VPIDLIVQPQIKVVAITGPN 382
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKT+GL ++MAK GL I + ++PWFD V ADIGDEQSL QSLSTFSGH++
Sbjct: 383 TGGKTVTLKTLGLGILMAKVGLFIPAKVPVELPWFDFVLADIGDEQSLEQSLSTFSGHIR 442
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
+I I+ T SLVLLDE+GAGT+P EG+AL ++LL A+ S LTIATTH+GELK L
Sbjct: 443 RISRILGSCTPDSLVLLDEVGAGTDPTEGSALAIALLHHLADC-SQLTIATTHYGELKAL 501
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG-AA 643
KY +D FENA +EFDE L+PTY++LWG+PGRS+A+ IA RLGL +V A L
Sbjct: 502 KYEDDRFENASVEFDEATLQPTYRLLWGIPGRSNALTIARRLGLTSEIVDQAANLVAPTG 561
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
+ +++ VI +E + Q EA L + L++ + + + E + + Q
Sbjct: 562 TQDVDRVIAGLENQRKQQETKAQEAGQLLGETERLYREVADKAKSLKERERQLQQSQEQA 621
Query: 704 ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+++A A+A+ + + ++L Q ++ + A Q A+Q L G + L S
Sbjct: 622 VAEAIAVAKQEIAQVIRRL-----QQGNVTGQDANQ----ATQDLQ----GIAEKHLPSR 668
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
Q KV P P + P GD V + G+ G V+ V
Sbjct: 669 QQ-----KVAKP-------------KPGFR----PKAGDRVRIPQIGQTGEVLAVGEGDL 706
Query: 824 EIVVQVGNMKWIMKFTDI 841
E+ V+ G MK + T+I
Sbjct: 707 EVTVRFGLMKMTIGITEI 724
>gi|168049630|ref|XP_001777265.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671367|gb|EDQ57920.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 916
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 192/401 (47%), Positives = 258/401 (64%), Gaps = 37/401 (9%)
Query: 444 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 503
PVPID+ + +T+V+ ITGPNTGGKT +KTVGLA +MAKSGL +L E +PWFD+V
Sbjct: 542 PVPIDVRVVGETKVVAITGPNTGGKTATIKTVGLAALMAKSGLFVLGIEPVVLPWFDAVL 601
Query: 504 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 563
ADIGDEQSLSQSLSTFSGHL++I I ST SLVLLDE+GAGT+P EG ALGM+LLE+
Sbjct: 602 ADIGDEQSLSQSLSTFSGHLRRIKRIKEVSTGSSLVLLDEVGAGTDPTEGAALGMALLES 661
Query: 564 FAESG---SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
FA+SG S LT+ATTHHGELKTLKYS+ FENA +EF E KL+PTYK+LWG+PGRS+AI
Sbjct: 662 FAQSGKGGSYLTMATTHHGELKTLKYSDSRFENASVEFSEEKLRPTYKLLWGIPGRSNAI 721
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
NIAERLG+P ++ AR LYG SA+++EVI+E+E K F + + A + S+ L +
Sbjct: 722 NIAERLGVPKDILDEARTLYGVVSAQLSEVIMELELAKRDFDQDIATADSQITDSKMLLQ 781
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
L+ +K+ E+ Q VQ+ AA +A ARS +H A+ +
Sbjct: 782 QLVAVSKKLQEN---QHMLDVQRADRVAA---------------AAGAARSQLHAIARDV 823
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+ S L +N +N + T V + AT S Q+P+ +P+V
Sbjct: 824 KSSTKVPLKVPPSFQN-----TNTEVTQVKQNMKVATNS--------QAPK---GAVPSV 867
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD+V+V G+ V++V+ SK+E+ VQ G M+ +K +I
Sbjct: 868 GDMVYVPKLGRNAKVVEVKTSKKEVTVQSGAMQVKVKLKEI 908
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 195/362 (53%), Gaps = 23/362 (6%)
Query: 44 DKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA 103
D++ E+L +LEW ++C +V+SFA T+L +E Q+ I T + S LL+ T+A
Sbjct: 116 DEEKSAAMETLELLEWPRVCRAVASFAATTLAKEQL--QVLEIPATREASEALLELTSAG 173
Query: 104 IEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI 163
+E +L + +VK I +R+ + EALAV LLQ S ++ +
Sbjct: 174 VEFISLLGGPFELGVLRTQVVKDCILRIRKGMVVSGVEALAVAMLLQTSGNVRRQVSNTA 233
Query: 164 KEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
+E D P+ M+ L R +I +DEDG++KDSASP L+++R Q + +E+
Sbjct: 234 QEFQDRQSVLEPIVDMVGPLKYFRGHAATI---IDEDGTVKDSASPELRKARIQERSVEQ 290
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLLSSSSGIGSVIEPLS 282
+L +L + + R++ EV + GR+C+ +D S GLLL S SG S IEP
Sbjct: 291 RLRELFNKISRDKGANIQSEEVVLVDGRMCLVVASDNRSNVPGLLLRSGSGATSYIEPAG 350
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
AVPLN++L +ARA V KAE +VL LT++++ LD+I+ LN I++LDV+ ARA YS
Sbjct: 351 AVPLNNKLSEARAEVAKAEYNVLSRLTDQLRPYLDDIQFCLNIIVRLDVIMARARYSTWL 410
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
G T P + S+ + L +A HPLL+Q+H++ + A L
Sbjct: 411 GATKPTFI-----------------DTESQSLVRLQLRRARHPLLVQRHREALRDAKAAL 453
Query: 403 ES 404
+S
Sbjct: 454 KS 455
>gi|170079175|ref|YP_001735813.1| recombination and DNA strand exchange inhibitor protein
[Synechococcus sp. PCC 7002]
gi|169886844|gb|ACB00558.1| DNA mismatch repair protein [Synechococcus sp. PCC 7002]
Length = 799
Score = 328 bits (840), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 252/802 (31%), Positives = 386/802 (48%), Gaps = 136/802 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HG 110
E+L++LEW +LC +S+FA T LG A Q Q+ DS LL +T +EMQ G
Sbjct: 7 ETLKLLEWQRLCQHLSTFAATKLG--AIAAQHLVFPQSQADSEILLAQT---VEMQALDG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR-AAIKEDADL 169
+ GV + + RA+ +A LL + TL R + E+A+L
Sbjct: 62 AVD---NGVSFEGIGDISDALERATV---GGLIAGKDLLLIATTLAGVRRLRRLVENAEL 115
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
LT+++ Q+ L + I +D+ G + D ASP L+ R +++ ++YQ +
Sbjct: 116 --ELSQLTRLVEQVRTYPELEQDIHHCIDDRGDVTDRASPKLEGIRVKIKGAREQIYQTL 173
Query: 230 DMLIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLN 287
+++ + ++ R + A Q G++ SS+G IEP V L
Sbjct: 174 QRIMQRHSGSIQEAVITQRGDRFVLPVKAGQKEQIPGIVHDISSTGSTLYIEPKGIVELG 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+QA + E VL LTEK+ ++++EK+L LD+ RA YSL G P
Sbjct: 234 NRLRQAVKQEEREIEIVLRQLTEKVAEVVEDLEKLLAIATTLDLAMTRARYSLWLDGHPP 293
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
P +P L + HPLL+ Q KQ+
Sbjct: 294 KFIAP--------DQPT-------------ILRQLRHPLLVWQEKQE------------- 319
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
+LE+ +PI++ I + RV+ ITGPNTGG
Sbjct: 320 -----------------------------ESLEV---IPINVQIRPEIRVVAITGPNTGG 347
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT+G+A +MAK GL I + ++PWFD V ADIGDEQSL QSLSTFSGH++++G
Sbjct: 348 KTVTLKTLGMAALMAKVGLFIPAIAPVEIPWFDQVLADIGDEQSLQQSLSTFSGHIRRVG 407
Query: 528 NII---SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
II Q + +LVLLDE+GAGT+P EG+AL ++LL+ A+ + LT+ATTH+GELK L
Sbjct: 408 RIIEALDQESQNNLVLLDEVGAGTDPTEGSALAIALLKYLADQ-TQLTVATTHYGELKAL 466
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
KY ++ FENA +EFDE L+PTYK+LWG+PGRS+A+ IA+RLGL +V+ A+ L G +
Sbjct: 467 KYEDERFENASVEFDEYSLRPTYKLLWGIPGRSNALAIAQRLGLDAEIVETAQDLLGNTN 526
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
+NEVI +E +QR + QK
Sbjct: 527 TNVNEVIAALE---------------------------------------AQRREQEQKA 547
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLH----CTKVGKNQHVL 760
+A A+ K ++ S + + +R +L+ + Q + K Q +
Sbjct: 548 KEAEALL-----KQTERFYTEVSSKAADLQRREAELKLAQDQQVQAAIAEAKAEIAQVIR 602
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL-PNVGDLVHVSSFGKKGTVIKVE 819
T Q T K + A + P+ K+ P +G+ + +S G+ VI+++
Sbjct: 603 TLQKGQPTAQKAQVATEALGDIAASKMSQPKRKKPGYQPQLGEKIRISKLGQTAEVIELD 662
Query: 820 PSKEEIVVQVGNMKWIMKFTDI 841
P + +V + G MK + +T+I
Sbjct: 663 PDNKTLVARFGVMKMSLDWTEI 684
>gi|409991618|ref|ZP_11274864.1| recombination and DNA strand exchange inhibitor protein
[Arthrospira platensis str. Paraca]
gi|291572107|dbj|BAI94379.1| MutS2 family protein [Arthrospira platensis NIES-39]
gi|409937528|gb|EKN78946.1| recombination and DNA strand exchange inhibitor protein
[Arthrospira platensis str. Paraca]
Length = 816
Score = 327 bits (838), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 249/810 (30%), Positives = 390/810 (48%), Gaps = 136/810 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++F T LG A + +I +T +++ RLL +T A ++Q
Sbjct: 5 ETLELLEWHRLCKHLATFTATKLG--AFAARQLAIPETKEETDRLLAQTKEAYQLQLKLV 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L L G+ + +++ R L E LA+ L + LR I + D+ +
Sbjct: 63 QGLSLDGI--QDIGASLERADRQGILFGEELLAIATTLAGAR----QLRRVIDDQEDVPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
LT ++ +L L + I + +DE G + D AS + + R ++Q ++YQ++
Sbjct: 117 ----LTSLVEELRTYPELEQEIHRCIDERGEVTDRASVKMGEIRARLQSTRDRIYQILQG 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + V+ GR I A Q + G++ +S++G +EP V LN+E
Sbjct: 173 ILQRKAQAVQQQIVTQREGRFVIPVKAPQKDAIPGIVHDASTTGATVYVEPHPIVALNNE 232
Query: 290 LQQ-ARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
L+Q RA T+AE + +LTE++ + ++EK+L + +D+ A+A YS P
Sbjct: 233 LRQIQRAEQTEAEA-IRRSLTEQVAAVVPDLEKLLAIVTTIDLALAKARYSYWLKANPPR 291
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
P D +SE TI L + HPLL+ W+ E
Sbjct: 292 FIDPGD---------------TSE---TINLRQLRHPLLI----------WQQEYEQGPE 323
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
+ VPIDI I + RV+ ITGPNTGGK
Sbjct: 324 V-----------------------------------VPIDITINPQIRVVAITGPNTGGK 348
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK GL I + E ++PWF V ADIGDEQS+ QSLSTFSGH+++I
Sbjct: 349 TVTLKTIGLAAIMAKVGLFIPAREPVEMPWFGQVLADIGDEQSIEQSLSTFSGHIRRITR 408
Query: 529 IIS--------------QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIA 574
I+ QSLVLLDEIGAGT+P EGTAL ++LL+ FA+ + LT+A
Sbjct: 409 ILQAIGEPMRVTEAGEYDRICQSLVLLDEIGAGTDPTEGTALAIALLQTFADR-TRLTVA 467
Query: 575 TTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQ 634
TTH G+LK LKY + FENA +EF++ L+PTY++LWG+PGRS+A+ IAERLGL +V+
Sbjct: 468 TTHFGDLKALKYKDTRFENASVEFNDASLQPTYRLLWGIPGRSNALKIAERLGLDHDIVK 527
Query: 635 NARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCA 694
A G ++N+VI +E + Q A L + LH L E
Sbjct: 528 LAGSYVGGGDEDVNQVIAGLEAQRRQQETKAIAASQLLKETERLHGEL-------AERAI 580
Query: 695 SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHK---RAQQLRPSASQSLHCT 751
S + R+ R L +++ + QA+ + K R QQ +P+A+ + T
Sbjct: 581 SLQERE-----------RQLKQAQEKEIKETLLQAKGEIAKVIRRLQQGKPTAADAQKAT 629
Query: 752 KVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGK 811
T+D + + + + + +P +P VGD + + G+
Sbjct: 630 ---------------ATLDAI------AENYLPSRQATPAPLPNFMPKVGDRIRIPRIGQ 668
Query: 812 KGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
++ ++ V+ G MK + +I
Sbjct: 669 TAEILSGPDDNNQLTVRFGIMKMTVGLGEI 698
>gi|282900091|ref|ZP_06308048.1| DNA mismatch repair protein [Cylindrospermopsis raciborskii CS-505]
gi|281194973|gb|EFA69913.1| DNA mismatch repair protein [Cylindrospermopsis raciborskii CS-505]
Length = 815
Score = 327 bits (837), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 259/806 (32%), Positives = 384/806 (47%), Gaps = 124/806 (15%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
+ E+L +LEW +LC +SSFA T LG +T+ I T ++S LL +T +++
Sbjct: 2 IATETLELLEWSRLCQHLSSFAATKLG--TIVTRSLPIPSTLEESEGLLCQTKEVYQLES 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
L G+ + ++ L E LA+ L + +LR I D
Sbjct: 60 QLISGLSFEGIQD--IGDSLERAELHGLLSSEELLAIATTLAGAR----NLRRVIDNQED 113
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L I L ++ QL L + I +DE I D AS L + R ++ L ++ Q
Sbjct: 114 LPI----LCDLVSQLRTYPELEQEIHHCIDERAQIADRASQKLSEIREDLRKLRSQITQK 169
Query: 229 MDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPL 286
+ +I+ ++N L ++ R + A Q + G++ SS+SG IEP S V +
Sbjct: 170 LHNIIQVKSNALQELIITQRGDRYVLPVKAVQKDAVPGIVHDSSTSGATLYIEPNSIVSM 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
++L+Q E +L LT K+ ++EK+L + +DV A+A YSL G
Sbjct: 230 GNQLRQTLKREQVEIEAILRILTTKVAEVKPDLEKLLAIVTTIDVAAAKARYSLWIEGNP 289
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + P SSSE I L + HPLL+ Q K
Sbjct: 290 PRLI-----------HPSIPGGSSSE---IITLRQLRHPLLVWQQKH------------- 322
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV-PIDIFIARKTRVLVITGPNT 465
E HPV P+D+ I+ +V+ ITGPNT
Sbjct: 323 ---------------------------------EQGHPVVPVDLLISPHIKVVTITGPNT 349
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKT+GLA +MAK GL I + E ++PWF V ADIGDEQSL+QSLSTFSGH+++
Sbjct: 350 GGKTVTLKTLGLAALMAKVGLFIPAREPVEIPWFSHVLADIGDEQSLAQSLSTFSGHIRR 409
Query: 526 IGNIISQ----------STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 575
I I++ TS SL+LLDE+GAGT+P EG+AL ++LL+ + LTIAT
Sbjct: 410 ISRILNAIGEERQSSPYQTSHSLILLDEVGAGTDPAEGSALAIALLKYLGDHAQ-LTIAT 468
Query: 576 THHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQN 635
TH GELK+LKY + FENA +EF+E L PTY++LWG+PGRS+A+ IA RLGL VV+N
Sbjct: 469 THFGELKSLKYEDIRFENASVEFNETTLSPTYRLLWGIPGRSNALAIALRLGLKPEVVEN 528
Query: 636 ARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCAS 695
A+ G + E+N+VI +E + A+ L + L+K + ++R
Sbjct: 529 AKSQLGETTDEVNQVIAGLEAQRRSQETKAAAAQELLKQTEKLYKEV--SQRATALEERE 586
Query: 696 QRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGK 755
+ R Q+I+ V K+ Q +Q V ++ QQ +P+A + TK
Sbjct: 587 KDLRASQEIA---------VQKAITQAKGEIAQ----VIRQLQQGKPTAQDAQKATK--- 630
Query: 756 NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+LT DK + A P+VK+ +P G+ V + G+ V
Sbjct: 631 ---LLTE-----IADKYQPVA------------PPKVKQGFIPEPGERVRIPKLGQTAQV 670
Query: 816 IKVEPSKEEIVVQVGNMKWIMKFTDI 841
I E+ V+ G MK + D+
Sbjct: 671 ISAADGNGELTVRFGMMKMTVNLEDV 696
>gi|427721207|ref|YP_007069201.1| MutS2 protein [Calothrix sp. PCC 7507]
gi|427353643|gb|AFY36367.1| MutS2 protein [Calothrix sp. PCC 7507]
Length = 828
Score = 325 bits (833), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 252/832 (30%), Positives = 383/832 (46%), Gaps = 160/832 (19%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +S+FA T LG A ++ I + +S++LL++T +++ +
Sbjct: 5 ETLELLEWHRLCQHLSTFAATKLG--AIASRHLQIPDSQAESIQLLEQTKEVYQLENRLT 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
SL G+ + A+ L +E LA+ L + +LR I D I
Sbjct: 63 TSLSFDGI--QDIGDALERAELQGILTGDELLAIATTLAGAR----NLRRVIDNQLDCPI 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
LT ++ +L L + I + +DE G + D AS L + R ++ L ++ Q +
Sbjct: 117 ----LTALVAELRTYPELEQEIHRCIDERGQVTDRASQKLGEIRTDLRRLRSQITQKLQN 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ ++ ++ R I A Q + G++ +S+SG +EP S VP+ ++
Sbjct: 173 ILQAKSGAVQEQLITQRGDRFVIPVKAPQKDAIPGIVHDTSTSGATLYVEPNSIVPMGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q EE + ALTE++ ++E++L + LD+ ARA YS G P
Sbjct: 233 LRQVIRKEQAEEEAIRRALTEQVAAVKPDLERLLAIVTTLDLATARARYSFWLGANPPRF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQAWKDLESANT 407
QD + I L HPLL+ QQH+Q
Sbjct: 293 IHRQDQE-------------------IITLRHLRHPLLVWQQQHEQ-------------- 319
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV-PIDIFIARKTRVLVITGPNTG 466
PV P+D+ I+ RV+ ITGPNTG
Sbjct: 320 ----------------------------------GQPVVPVDLLISPHIRVVTITGPNTG 345
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GLA +MAK GL I + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 346 GKTVTLKTLGLAALMAKVGLFIPAREPVEIPWFDQVLADIGDEQSLQQSLSTFSGHIRRI 405
Query: 527 GNIISQ------------------------------------STSQS-LVLLDEIGAGTN 549
I++ ST S LVLLDE+GAGT+
Sbjct: 406 SRILNALGHGEEAALRLRSGQGSREQGAGEQNLELRTPDSVLSTQHSALVLLDEVGAGTD 465
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P+EG+AL ++LL+ A+ L IATTH GELK LKY ++ FENA +EFDE L PTY++
Sbjct: 466 PVEGSALAIALLQYLADHAQL-AIATTHFGELKALKYEDERFENASVEFDETTLSPTYRL 524
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
LWG+PGRS+A+ IA RLGL V+++A+ G A+ E+N+VI +E + + EA+
Sbjct: 525 LWGIPGRSNALTIALRLGLKPEVIEHAKTQVGEATDEVNQVIAGLEAQRRRQETKATEAQ 584
Query: 670 HFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQA 729
+ L + L+K + K + + + R+ + QQ A
Sbjct: 585 NVLQQAERLYKEV---------------SAKAEALQEREKALRASQEVAVQQAIAQAKTE 629
Query: 730 RSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQS 789
+ V +R QQ P+A + T NQ + +Q K +
Sbjct: 630 IAQVIRRLQQGTPTAQDAQQATN-ALNQ--IAQQYQPAPPPKPKAGF------------- 673
Query: 790 PRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+P VGD + +S FG+ V+ E V+ G MK + DI
Sbjct: 674 -------MPKVGDRIRISKFGQTAEVLTAPDEDGEFSVRFGIMKMTVTLEDI 718
>gi|376003750|ref|ZP_09781556.1| DNA mismatch repair protein MutS [Arthrospira sp. PCC 8005]
gi|375327894|emb|CCE17309.1| DNA mismatch repair protein MutS [Arthrospira sp. PCC 8005]
Length = 818
Score = 325 bits (833), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 247/807 (30%), Positives = 389/807 (48%), Gaps = 130/807 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++F T LG A + +I +T +++ RLL +T A +++
Sbjct: 7 ETLELLEWHRLCKHLATFTATKLG--AFAARQLAIPETKEETDRLLAQTKEAYQLELKLV 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L L G+ + +++ R L E LA+ L + LR I + D+ +
Sbjct: 65 QGLSLDGI--QDIGASLERADRQGILFGEELLAIATTLAGAR----QLRRVIDDQEDVPV 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
LT ++ +L L + I + +DE G + D AS + R ++Q ++YQ++
Sbjct: 119 ----LTSLVEELRTYPELEQEIHRCIDERGEVTDRASVKMGAIRARLQSTRDRIYQVLQG 174
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ GR I A Q + G++ +S++G +EP S V LN++
Sbjct: 175 ILQRKAQAVQQQIITQREGRFVIPVKAPQKDAIPGIVHDASTTGATVYVEPHSIVALNNQ 234
Query: 290 LQQ-ARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
L+Q RA T+AE + +LTE++ + ++EK+L + +D+ A+A YS P
Sbjct: 235 LRQIQRAEQTEAEA-IRRSLTEQVAAVVPDLEKLLAIVTTIDLALAKARYSYWLQANPPR 293
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
P D +SE TI L + HPLL+ W+ E
Sbjct: 294 FIDPGD---------------TSE---TINLRQLRHPLLI----------WQQEYEQGPE 325
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
+ VPIDI I + RV+ ITGPNTGGK
Sbjct: 326 V-----------------------------------VPIDITINPQIRVVAITGPNTGGK 350
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK GL I + E ++PWF V ADIGDEQS+ QSLSTFSGH+++I
Sbjct: 351 TVTLKTIGLAAIMAKVGLFIPAREPVEMPWFGQVLADIGDEQSIEQSLSTFSGHIRRITR 410
Query: 529 II--------------SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIA 574
I+ S SLVLLDEIGAGT+P EGTAL ++LL+ FA+ + LT+A
Sbjct: 411 ILQAIGEPMRVTEAGESDRICPSLVLLDEIGAGTDPTEGTALAIALLQKFADL-TRLTVA 469
Query: 575 TTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQ 634
TTH G+LK LKY + FENA +EFD+ L+PTY++LWG+PGRS+A+ IAERLGL +V+
Sbjct: 470 TTHFGDLKALKYKDTRFENASVEFDDASLQPTYRLLWGIPGRSNALKIAERLGLDHDIVK 529
Query: 635 NARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCA 694
A G ++N+VI +E + Q A L + LH L E
Sbjct: 530 LAGSYVGGGDEDVNQVIEGLEAQRRQQETKAIAASQLLQETERLHGEL-------AERAI 582
Query: 695 SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG 754
S + R+ R L Q++ + QA++ + K ++L+ + + K
Sbjct: 583 SLQERE-----------RQLKQAQEQEIKETLLQAKAEIAKVIRRLQQGKATAADAQKAT 631
Query: 755 KNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGT 814
+ N+ P+ ++ V +SP +P VGD + + G+
Sbjct: 632 ARLDAIAENY---------LPSRQATPV-----RSPNF----MPKVGDRIRIPRIGQTAE 673
Query: 815 VIKVEPSKEEIVVQVGNMKWIMKFTDI 841
++ ++ V+ G MK + +I
Sbjct: 674 ILSGPDDNNQLTVRFGIMKMTVGLGEI 700
>gi|209523920|ref|ZP_03272472.1| MutS2 family protein [Arthrospira maxima CS-328]
gi|423063765|ref|ZP_17052555.1| MutS2 family protein [Arthrospira platensis C1]
gi|209495592|gb|EDZ95895.1| MutS2 family protein [Arthrospira maxima CS-328]
gi|406714614|gb|EKD09775.1| MutS2 family protein [Arthrospira platensis C1]
Length = 816
Score = 325 bits (832), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 247/807 (30%), Positives = 390/807 (48%), Gaps = 130/807 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++F T LG A + +I +T +++ RLL +T A +++
Sbjct: 5 ETLELLEWHRLCKHLATFTATKLG--AFAARQLAIPETKEETDRLLAQTKEAYQLELKLV 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L L G+ + +++ R L E LA+ L + LR I + D+ +
Sbjct: 63 QGLSLDGI--QDIGASLERADRQGILFGEELLAIATTLAGAR----QLRRVIDDQEDVPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
LT ++ +L L + I + +DE G + D AS + + R ++Q ++YQ++
Sbjct: 117 ----LTSLVEELRTYPELEQEIHRCIDERGEVTDRASVKMGEIRARLQSTRDRIYQVLQG 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ GR I A Q + G++ +S++G +EP S V LN++
Sbjct: 173 ILQRKAQAVQQQIITQREGRFVIPVKAPQKDAIPGIVHDASTTGATVYVEPHSIVVLNNQ 232
Query: 290 LQQ-ARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
L+Q RA T+AE + +LTE++ + ++EK+L + +D+ A+A YS P
Sbjct: 233 LRQIQRAEQTEAEA-IRRSLTEQVAAVVPDLEKLLAIVTTIDLALAKARYSYWLQANPPR 291
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
P D +SE TI L + HPLL+ W+ E
Sbjct: 292 FIDPGD---------------TSE---TINLRQLRHPLLI----------WQQEYEQGPE 323
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
+ VPIDI I + RV+ ITGPNTGGK
Sbjct: 324 V-----------------------------------VPIDITINPQIRVVAITGPNTGGK 348
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK GL I + E ++PWF V ADIGDEQS+ QSLSTFSGH+++I
Sbjct: 349 TVTLKTIGLAAIMAKVGLFIPAREPVEMPWFGQVLADIGDEQSIEQSLSTFSGHIRRITR 408
Query: 529 II--------------SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIA 574
I+ S SLVLLDEIGAGT+P EGTAL ++LL+ FA+ + LT+A
Sbjct: 409 ILQAIGEPMRVTEAGESDRICPSLVLLDEIGAGTDPTEGTALAIALLQKFADL-TRLTVA 467
Query: 575 TTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQ 634
TTH G+LK LKY + FENA +EFD+ L+PTY++LWG+PGRS+A+ IAERLGL +V+
Sbjct: 468 TTHFGDLKALKYKDTRFENASVEFDDASLQPTYRLLWGIPGRSNALKIAERLGLDHDIVK 527
Query: 635 NARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCA 694
A G ++N+VI +E + Q A L + LH L E
Sbjct: 528 LAGSYVGGGDEDVNQVIEGLEAQRRQQETKAIAASQLLQETERLHGEL-------AERAI 580
Query: 695 SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG 754
S + R+ R L Q++ + QA++ + K ++L+ + + K
Sbjct: 581 SLQERE-----------RQLKQAQEQEIKETLLQAKAEIAKVIRRLQQGKATAADAQKAT 629
Query: 755 KNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGT 814
+ N+ P+ ++ V +SP +P VGD + + G+
Sbjct: 630 ARLDAIAENY---------LPSRQATPV-----RSPNF----MPKVGDRIRIPRIGQTAE 671
Query: 815 VIKVEPSKEEIVVQVGNMKWIMKFTDI 841
++ ++ V+ G MK + +I
Sbjct: 672 ILSGPDDNNQLTVRFGIMKMTVGLGEI 698
>gi|282896735|ref|ZP_06304743.1| MutS 2 protein [Raphidiopsis brookii D9]
gi|281198453|gb|EFA73341.1| MutS 2 protein [Raphidiopsis brookii D9]
Length = 814
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 256/806 (31%), Positives = 385/806 (47%), Gaps = 125/806 (15%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
+ E+L +LEW +LC +SSFA T LG + + I T ++S LL +T +++
Sbjct: 2 IATETLELLEWPRLCQHLSSFATTKLG--TIVARSLPIPSTLEESEGLLCQTKEVYQLES 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
L G+ + ++ L E LA+ L + +LR I D
Sbjct: 60 QLISGLSFEGIQD--IGDSLERAELHGLLSSEELLAIATTLAGAR----NLRRVIDNQED 113
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L I L ++ QL L + + +DE I D AS L + R ++ L ++ Q
Sbjct: 114 LPI----LCDLVSQLRTYPELEQEVHHCIDERAQIADRASQKLSEIREDLRKLRSQITQK 169
Query: 229 MDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPL 286
+ +I+ ++N L ++ R + A Q + G++ SS+SG IEP S V +
Sbjct: 170 LHNIIQVKSNALQELIITQRGDRYVLPVKAPQKDAVPGIVHDSSTSGATLYIEPNSIVSM 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
++L+Q E +L LT K+ ++EK+L + +DV A+A YSL G
Sbjct: 230 GNQLRQTLKREQVEIEAILRILTTKVAEVKPDLEKLLAIVTTIDVAAAKARYSLWIEGNP 289
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + P + SSS+ I L + HPLL+ Q K
Sbjct: 290 PRLIHP------------SIPGSSSQ---IITLRQLRHPLLVWQQKH------------- 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV-PIDIFIARKTRVLVITGPNT 465
E HPV P+D+ I+ +V+ +TGPNT
Sbjct: 322 ---------------------------------EQGHPVVPVDLLISPHIKVVTMTGPNT 348
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKT+GLA +MAK GL I + E ++PWF V ADIGDEQSL+QSLSTFSGH+++
Sbjct: 349 GGKTVTLKTLGLAALMAKVGLFIPAREPVEIPWFSQVLADIGDEQSLAQSLSTFSGHIRR 408
Query: 526 IGNIISQ----------STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 575
I I++ TS SL+LLDE+GAGT+P EG+AL ++LL+ + LTIAT
Sbjct: 409 ISRILNAIGEEIQSSPYQTSHSLILLDEVGAGTDPAEGSALAIALLKYLGDHAQ-LTIAT 467
Query: 576 THHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQN 635
TH GELK+LKY + FENA +EF+E L PTY++LWG+PGRS+A+ IA RLGL VV+N
Sbjct: 468 THFGELKSLKYEDIRFENASVEFNETTLSPTYRLLWGIPGRSNALAIALRLGLKPEVVEN 527
Query: 636 ARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCAS 695
A+ G + E+N+VI +E + A+ L + L+K + ++R
Sbjct: 528 AKSQLGGTTDEVNQVIAGLEAQRRSQETKAAAAQELLKQTEKLYKEV--SQRATALEERE 585
Query: 696 QRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGK 755
+ R Q+I+ V K+ Q +Q V ++ QQ +P+A + TK
Sbjct: 586 KDLRASQEIA---------VQKAITQAKGEIAQ----VIRQLQQGKPTAQDAQKATK--- 629
Query: 756 NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+LT DK + PA P+VK+ +P G+ V + G+ V
Sbjct: 630 ---LLTE-----IADKYQ-PAA-----------PPKVKQGFIPEPGERVRIPKLGQTAQV 669
Query: 816 IKVEPSKEEIVVQVGNMKWIMKFTDI 841
I E+ V+ G MK + D+
Sbjct: 670 ISAADGNGELTVRFGMMKMTVNLEDV 695
>gi|443477184|ref|ZP_21067049.1| MutS2 family protein [Pseudanabaena biceps PCC 7429]
gi|443017746|gb|ELS32124.1| MutS2 family protein [Pseudanabaena biceps PCC 7429]
Length = 678
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 250/797 (31%), Positives = 392/797 (49%), Gaps = 134/797 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW++LC +S+F T LG A I Y+++L LL +T A +++ +
Sbjct: 4 ETLDLLEWNRLCQHLSTFTTTKLG--AIAAAHIPIPDRYEETLELLTQTKEAYALEERNA 61
Query: 112 CSLDLTGVDLSLVKSAIREVRRASP---LRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
GV L +++ V RA L E A+ L + L+ L ++AD
Sbjct: 62 ------GVSLDGIQNITEAVFRAEKQGILSALELWAIATTLAGARNLRRQL-----DNAD 110
Query: 169 LYIRFMPLTQMIM-QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY- 226
+ P Q++ L + + I + +DE G++ D AS L + R ++ + ++
Sbjct: 111 ----YCPNLQILASDLRTYPDVEQEIYRCIDEGGNVLDRASERLGEIRHELTSVRDQIMT 166
Query: 227 QLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAV 284
+L +++ RN ++ + ++ + R + + Q G++ +SS+G+ +EP S V
Sbjct: 167 KLQNIMQRNASSLQEQI-ITQRNDRYVLSVKSPQRDRVPGVIHDTSSTGMTLFVEPNSIV 225
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
N+ L+Q E +L L+ K+ ++++++L + ++D+ ARA Y+ GG
Sbjct: 226 QSNNRLRQLLKMEQAQIEIILTELSAKITEIAEDLQRLLIIVTKIDLAVARARYAYWLGG 285
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
P+ FL Q+ I L + HPLL+ Q K
Sbjct: 286 NPPH-FLDQE---------------------AIVLRQLRHPLLVWQQK------------ 311
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
N E R VP+D+ I+ + V+VITGPN
Sbjct: 312 -NEEGR--------------------------------EVVPVDVLISPQISVVVITGPN 338
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT LKT GLA +MAK+G+ I + E ++PWFD V ADIGDEQSL Q+LSTFSGH++
Sbjct: 339 TGGKTATLKTFGLAALMAKAGMFIPAREPVEMPWFDLVLADIGDEQSLQQNLSTFSGHIR 398
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
+IG I+ + QSLVLLDE+GAGT+P EG+A+ +LLE + + L IATTH GELK L
Sbjct: 399 RIGRILEALSPQSLVLLDEVGAGTDPSEGSAIATALLEYLGDH-TRLAIATTHFGELKAL 457
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
KY N FENA +EFD+ L PTY++LWG+PGRS+A+ IA RLGLP ++ A+ G S
Sbjct: 458 KYQNPKFENASVEFDDASLAPTYRLLWGIPGRSNALAIAGRLGLPQDILAAAQVRVGIGS 517
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
AE+N+VI E+E + + + A H L+ + LHK +L
Sbjct: 518 AEMNDVIAELEAQRREQTQKTEAAAHLLVETERLHKEIL--------------------- 556
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
D A + R SQA+ L ++ +++ + +Q+ +VG+ L
Sbjct: 557 -DRAEMMR--------------SQAKELRERQEKEVNAAIAQA--QKEVGRVIRKLQQGE 599
Query: 765 QQTTVDKVEHPATASSSVVK-DIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
Q T V+H + K + + P K N+GD V + FGK V+ V
Sbjct: 600 QAAT--DVQHTERRIEELTKRHLPEMPPAKPKLTLNIGDRVRIPKFGKIAQVLTVPNGAG 657
Query: 824 EIVVQVGNMKWIMKFTD 840
+ V++G MK + +D
Sbjct: 658 DFSVRLGQMKLSVNLSD 674
>gi|428200893|ref|YP_007079482.1| MutS2 family protein [Pleurocapsa sp. PCC 7327]
gi|427978325|gb|AFY75925.1| MutS2 family protein [Pleurocapsa sp. PCC 7327]
Length = 824
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 246/826 (29%), Positives = 392/826 (47%), Gaps = 155/826 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW++LC +++FA T +G A + I T +SL+LL +T ++++
Sbjct: 5 ETLELLEWNRLCQHLATFAATKVG--AVAARNLEIPTTKTESLQLLAQTKEVYQLEQDLE 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
G+ + + ++ + L E L + L LR I D+ +
Sbjct: 63 TGWSFDGI--ADIGESLERAKLGGMLSGQELLDIATTLAGVR----RLRRVIDNREDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
LT+++ ++ + + I + +D+ G + D ASP L R +++ + +YQ +
Sbjct: 117 ----LTELVAEIRTYPEIEQEIHRCIDDAGKVADRASPKLASIRARLKEVRDSIYQKLQS 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R I A Q G++ +SS+G IEP + V L ++
Sbjct: 173 ILQRQGGAVQEPVITQRGDRFVIPVKAPQKDQIPGIIHDTSSTGATLYIEPNAIVNLGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q R EE +L ALTE++ ++E +L LD+ ARA YSL G +P
Sbjct: 233 LRQYRRQEQAEEEAILRALTERVAAVESDLEYLLAVATILDLATARARYSLWLEGNAPRF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
D + EP+T L + HPLL+ QH+ +
Sbjct: 293 I---DFEEG---EPIT-------------LRQLRHPLLVWQHQHE--------------- 318
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKT 469
+ A VPI++ I K RV+ ITGPNTGGKT
Sbjct: 319 ------------------------------QGADVVPINVQIDPKIRVVAITGPNTGGKT 348
Query: 470 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL------ 523
+ LKT+GLA +MAK GL I + E ++PWF+ V ADIGDEQS+ QSLSTFSGH+
Sbjct: 349 VALKTLGLAALMAKVGLFIPAREPVELPWFEQVLADIGDEQSIEQSLSTFSGHIRRIIRI 408
Query: 524 ----------------------------KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555
+ IG I ++ +QSL+LLDE+GAGT+P EG+A
Sbjct: 409 IDTLKAEFSSSRVQKDPDDNRQAQEWDSEAIGKI-QRTNNQSLILLDEVGAGTDPAEGSA 467
Query: 556 LGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPG 615
L ++LL+ A++ +LLTIATTH+GELK LKY + FENA +EFD+ L PTY++LWG+PG
Sbjct: 468 LAIALLKYLADN-ALLTIATTHYGELKALKYQDSRFENASVEFDDRTLSPTYRLLWGIPG 526
Query: 616 RSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLS 675
RS+A+ IA+RLGL +V+ AR+ G S EIN+ I +E + + EA L +
Sbjct: 527 RSNALAIAQRLGLGQEIVEEARKRVGGYSEEINQTIAGLEAQRREQELKAKEASQLLQQT 586
Query: 676 RNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHK 735
+ +I E AS + R+ R L +++ + +QA++ + K
Sbjct: 587 ERFYT-------EISEKAASLQERE-----------RELKQYQEREVQKAIAQAKAEIAK 628
Query: 736 RAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT 795
+QL+ + +N T Q ++ P SS+
Sbjct: 629 VIRQLQ-------QGSPTAQNAQKATEAIGQIAETRLPKPEKHSSNY------------- 668
Query: 796 ELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
LP VG+ + + + G+ V+ + + EE+ V+ G MK + T+I
Sbjct: 669 -LPKVGERIRLPNLGQTAEVLNL--ADEEVTVRFGLMKMTVPLTEI 711
>gi|428218654|ref|YP_007103119.1| MutS2 family protein [Pseudanabaena sp. PCC 7367]
gi|427990436|gb|AFY70691.1| MutS2 family protein [Pseudanabaena sp. PCC 7367]
Length = 750
Score = 323 bits (827), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 255/819 (31%), Positives = 414/819 (50%), Gaps = 104/819 (12%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +S+FA T LG A QL ++ Y +L LL +T ++
Sbjct: 4 ETLELLEWSRLCEHLSTFAATKLGAVAA-RQLVPPDR-YDRTLELLTQTKEVSWLE---- 57
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQ--LSLRAAIKEDADL 169
S L G+ + ++ ++R + N L L Q + TL +LR I D
Sbjct: 58 -STLLGGLTMEGIQDITVPLKR---VEKNGMLYAEQLWQVATTLAGARNLRRIIDNADDC 113
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
L + +L L + I + +DE G++ D AS L Q R + + ++Y ++
Sbjct: 114 EY----LQAFVSELRTYPELEQDIYRCIDESGTVLDRASEKLGQLRASSRQVRDRIYGIL 169
Query: 230 DMLIRNEN---NESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAV 284
+++ ++ E++ + S R + A Q G++ +SS+G+ +EP + V
Sbjct: 170 QNIMQRKSAALQENIITQRSD---RYVLSVKAPQKDKIPGVVHDASSTGMTVFVEPHAIV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
N++L+Q E +L L+ ++ +++ ++L + ++D+ ARA Y+L G
Sbjct: 227 TANNQLRQLAKQEQAEIEIILRQLSGQVAEVGEDLWRLLAIVTEIDLAIARARYALWLGA 286
Query: 345 TSPNI--FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQ---KTQQAW 399
+P F D + S SS+ + LLQ +Q
Sbjct: 287 NAPTFINFAAPDAATDIESNQKESASQSSDVDQ-----------LLQSESDDPGNSQLVE 335
Query: 400 KDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHP--------------V 445
A + L ++ NA +L P+++ + L+ HP V
Sbjct: 336 PGDRPATSSLLKKPASKINA--------DLPPAQLTLRGLK--HPLLVWQQQHEQGREVV 385
Query: 446 PIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFAD 505
P+D+ IA + V+VITGPNTGGKT LKT GLA +MAKSG+ + + E ++PWFD V AD
Sbjct: 386 PVDVLIAPEISVVVITGPNTGGKTATLKTFGLAALMAKSGMFVPAREPVELPWFDLVLAD 445
Query: 506 IGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565
IGDEQSL Q+LSTFSGH+K+IG I++ +T++SL+LLDE+GAGT+P EG+A+ +LLE A
Sbjct: 446 IGDEQSLQQNLSTFSGHIKRIGRILTAATAESLILLDEVGAGTDPTEGSAIAKALLEYLA 505
Query: 566 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAER 625
+ + LT+ATTH GELKTLKY++ FENA +EFD+VKL PTY++ WG+PGRS+A+ IA R
Sbjct: 506 -THACLTVATTHFGELKTLKYNHACFENAAVEFDDVKLAPTYRLQWGIPGRSNALAIAAR 564
Query: 626 LGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRT 685
LG P +++ A+ G SAE+N VI ++E + + + + +A L + +L+ + +
Sbjct: 565 LGFPAEILEQAQDHVGFGSAELNTVIADLEGQRRKHEDKLKQASKLLAQTEHLYVEISKK 624
Query: 686 RRKILEHCASQRFRKVQKISDAAAI--ARSLVHKSAQQLCPSAS-QARSLVHKRAQQLRP 742
K+ E + + R+ Q+I AI A+ + + ++L S +A +R Q+L
Sbjct: 625 AAKLKE--SERELRQNQEIEVTEAIKQAKKEIARVIRKLQKGDSPEAVHFAERRVQEL-- 680
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGD 802
+H+ + Q P T S + K + P VGD
Sbjct: 681 ------------SKRHLPSQQPQ---------PKTQSQAQQKYV-----------PKVGD 708
Query: 803 LVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V V G+ V+ + +E+ V++G MK + DI
Sbjct: 709 RVRVPKLGQVVQVLSEPTNADELSVRLGQMKMTVALRDI 747
>gi|307152450|ref|YP_003887834.1| MutS2 family protein [Cyanothece sp. PCC 7822]
gi|306982678|gb|ADN14559.1| MutS2 family protein [Cyanothece sp. PCC 7822]
Length = 801
Score = 322 bits (825), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 258/812 (31%), Positives = 398/812 (49%), Gaps = 151/812 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +S+FA T LG A + + +T ++S +LL +T ++++ +
Sbjct: 5 ETLELLEWHRLCQHLSTFAATKLG--AIAAEYMKLPETQEESSQLLAQTEEVYDLEQRLN 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+L G+ + + A+ L E L++ L LR I+E + +
Sbjct: 63 TALSFEGI--TDIGDALERSDLGGVLSGKELLSIATTLAGVR----RLRRLIEEQEKIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY-QLMD 230
L ++ + + + I + ++EDG + D ASP L++ RGQ++++ ++Y +L D
Sbjct: 117 ----LKTLVANVRTYPEIEQEIHRCIEEDGEVSDRASPRLREIRGQMKVVRERIYRKLQD 172
Query: 231 MLIRNEN--NESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPL 286
++ R ES+ ++ R + A Q G++ SSS+G IEP S V L
Sbjct: 173 IMQRQSGAMQESV---ITQRGDRFVLPVKAPQKDQVPGIIHDSSSTGATLYIEPSSVVEL 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
++L+Q S EE +L L+ K+ +++E +L LD+ AR+ YS G
Sbjct: 230 GNQLRQYHRSEQIEEETILRGLSAKVAEVKEDLEDLLAAATILDLAVARSRYSWWLKGNP 289
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQAWKDLES 404
P P HE +T L + HPLL+ QQH+Q +
Sbjct: 290 PRFIEP--------HEHIT-------------LRQLRHPLLIWQQQHEQGPEV------- 321
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
VPI++ + K RV+ ITGPN
Sbjct: 322 ----------------------------------------VPINVQVDPKIRVVAITGPN 341
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKTVGLA +MAK+G+ I + ++PWF+ + ADIGDEQSL QSLSTFSGH++
Sbjct: 342 TGGKTVTLKTVGLAALMAKAGIFIPAKVPVELPWFEQILADIGDEQSLQQSLSTFSGHIR 401
Query: 525 QIG------NIISQ---STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 575
+I N S+ + S SLVLLDE+GAGT+P EG+AL SLL+ AE+ LTIAT
Sbjct: 402 RIIRIIEALNPTSEAPTTASSSLVLLDEVGAGTDPAEGSALATSLLKYLAEAAG-LTIAT 460
Query: 576 THHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQN 635
TH+GELK LKY ++ FENA +EF++ L PTY++LWG+PGRS+A+ IA RLGL ++++
Sbjct: 461 THYGELKALKYQDERFENASVEFNDQTLSPTYRLLWGIPGRSNALTIAGRLGLRPDIIED 520
Query: 636 ARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLH------KNLLRTRRKI 689
AR G S +IN VI +E+ + + E EA L + + N L+ R K
Sbjct: 521 ARTRVGGFSEDINRVIAGLEQQRREQEEKAKEATQLLKQTERFYAEVSQKANALQQREKD 580
Query: 690 LEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLH 749
L+ Q ++QK AA + V + QQ P+A A+ A+++L
Sbjct: 581 LKQQQEQ---EIQKAIIAAKAEIAQVIRQLQQGTPTAQNAQ------------KATEAL- 624
Query: 750 CTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSF 809
K+ + Q + KQ ++ R P VG+ V + S
Sbjct: 625 -GKIAEKQ-------------------------LPKQKQPVKIYR---PQVGEKVRIPSL 655
Query: 810 GKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
G+ V+ + EE+ V+ G MK + F DI
Sbjct: 656 GQTAEVLNILEESEEVSVRFGIMKMTVPFRDI 687
>gi|428317789|ref|YP_007115671.1| MutS2 protein [Oscillatoria nigro-viridis PCC 7112]
gi|428241469|gb|AFZ07255.1| MutS2 protein [Oscillatoria nigro-viridis PCC 7112]
Length = 874
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 247/840 (29%), Positives = 393/840 (46%), Gaps = 154/840 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A L I T + L +T A +++
Sbjct: 14 ETLELLEWPRLCQHLATFAATKLGVAAALD--LPIPATQAHTAELKAQTQEAYQLENRAG 71
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+L G+ + ++++ L E LA+ L + LR I D+
Sbjct: 72 GALSFEGI--QDIGTSLQRAELQGLLSGEELLAIATTLAGAR----QLRRIIDSQPDVPT 125
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L ++ QL L + I + +D+ + D A+P L R Q++ L ++YQ++
Sbjct: 126 ----LQELAAQLRTYPELEQEIHRCIDDRAQVADRATPKLAGIRVQMRQLRDRIYQILQG 181
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ ++N ++ GR I A Q + G++ SS+SG +EP S V LN++
Sbjct: 182 ILQRQSNAVQEQLITQRSGRFVIPVKAPQKDAIPGIVHDSSASGATLYVEPHSTVNLNNQ 241
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
++Q EE V ALTE++ ++++++ + LD+ A+A YS P
Sbjct: 242 MRQLLRQEQAEEEAVRRALTEQVAAVKPDLDRLVVVVTTLDLATAKARYSYWLQANPPK- 300
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWT-------------IYLPKAYHPLLL--QQHKQK 394
F+ P T ++ E + I L + HPLL+ QQH+Q
Sbjct: 301 FIELGEPELAPKNPETEDEEKADEENSENSQLLIPNLRSQITLRQLRHPLLVWQQQHEQ- 359
Query: 395 TQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV-PIDIFIAR 453
PV P+D+ I
Sbjct: 360 -----------------------------------------------GFPVVPVDLTIGP 372
Query: 454 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 513
RV+ ITGPNTGGKT+ LKT+GLA +MAK+G+ + + E ++PWFD++ ADIGDEQSL
Sbjct: 373 HIRVVAITGPNTGGKTVTLKTLGLAALMAKAGMFVAAREPVELPWFDNILADIGDEQSLQ 432
Query: 514 QSLSTFSGHLKQIGNII------------------SQ--------STSQSLVLLDEIGAG 547
QSLSTFSGH+++I I+ SQ +SLVLLDE+GAG
Sbjct: 433 QSLSTFSGHIRRISRILEVLHNKSEGESAGEGEENSQFPMPHAQFPMPKSLVLLDEVGAG 492
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG+AL ++LL+ A+ SLLT+ATTH GELK LKY + FENA +EFD+ ++PTY
Sbjct: 493 TDPSEGSALAIALLKYLAQH-SLLTVATTHFGELKALKYQDSRFENASVEFDDNSMQPTY 551
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
++LWG+PGRS+A+ IA+RLGL +V+ A+ G AS ++N+VI +E + + E
Sbjct: 552 RLLWGIPGRSNALTIAKRLGLLPEIVEEAQTYVGGASQDVNQVIAGLEAQRRKQETKARE 611
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHK------SAQQ 721
A L + LH+ + + + E + + +++A A+S + + S Q
Sbjct: 612 ATQLLHQTEKLHREVSQKAAALQERERELKIAQEVAVNEAIGSAKSEIAQIIRRLQSGNQ 671
Query: 722 LCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSS 781
+A QA +++ +Q+ PS Q PA
Sbjct: 672 TAQNAQQATETLNQISQKHLPSRQQ----------------------------PA----- 698
Query: 782 VVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ K +P GD + + S G+ V+ + EE+ V+ G MK +K +I
Sbjct: 699 ---------KPKPGFMPKAGDRIRIPSLGQTAEVLSGPDANEELSVRFGIMKMTVKLGEI 749
>gi|428301815|ref|YP_007140121.1| MutS2 protein [Calothrix sp. PCC 6303]
gi|428238359|gb|AFZ04149.1| MutS2 protein [Calothrix sp. PCC 6303]
Length = 796
Score = 319 bits (818), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 249/797 (31%), Positives = 382/797 (47%), Gaps = 123/797 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A ++ I + S LL +T +++ S
Sbjct: 8 ETLELLEWSRLCQHLANFAATKLG--AIASRNLQIPTSQAQSENLLAQTQEIYKLESRIS 65
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + AI L E LA+ L + +LR I DL I
Sbjct: 66 PGLSFEGI--QDIGDAIERAALQGILAGEELLAIATTLAGTR----NLRRIIDNQEDLPI 119
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L ++ L + + I + VDE G I D AS L R +++ ++ Q +
Sbjct: 120 ----LLDLVADLRTYPEIEQEIHRCVDERGQIADRASQKLGDIRAELRKSRSQIIQKLQN 175
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ ++N ++ R I A G++ +S+SG+ IEP S VP+ ++
Sbjct: 176 ILQVKSNAVQENVITQRGDRYVIPVKASHKDVIHGIVHDTSTSGVTLYIEPNSVVPMGNQ 235
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q EE + LT ++ D++E++L + LD+ A++ YS P
Sbjct: 236 LRQLIRKEEIEEEVIRRQLTAQVADIKDDLERLLAIVTTLDLATAKSRYSFWLKANPPRF 295
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
E TI L K HPLL QH+
Sbjct: 296 V-------------------DREANETITLRKLRHPLLEWQHQH---------------- 320
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV-PIDIFIARKTRVLVITGPNTGGK 468
E H V P+D+ I +TRV+ ITGPNTGGK
Sbjct: 321 ------------------------------EQGHEVIPVDLVIQPETRVVTITGPNTGGK 350
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+ LA +MAK GL + + E ++PWF+ V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 351 TVTLKTLALAALMAKVGLFVPAREPVELPWFEQVLADIGDEQSLQQSLSTFSGHIRRISR 410
Query: 529 IISQST----SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I++ T + SLVLLDE+GAGT+P+EG+AL ++LL A LLT+A+TH GELK L
Sbjct: 411 ILNAITGDTVTPSLVLLDEVGAGTDPVEGSALAIALLHHLANH-VLLTMASTHFGELKAL 469
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
KY ++ FENA +EFD+ L PTYK+LWG+PGRS+A+ IA+RLGL V++ A+Q G A+
Sbjct: 470 KYQDERFENASVEFDDATLSPTYKLLWGIPGRSNALAIAQRLGLSVDVIEAAKQQMGGAN 529
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
E+NEVI +E + + EA++ L + L+K + + E Q + Q++
Sbjct: 530 DEVNEVIAGLEAQRRRQETKASEAQNLLHQAEKLYKEVSAKATNLEER--EQALKASQEV 587
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
+ AIA+ A + V K Q+ +P+A ++ T
Sbjct: 588 AVQNAIAQ-------------AKGEIAKVIKGLQKGKPTAQEAQQAT------------- 621
Query: 765 QQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEE 824
T++++ S+ + K +P+ +P GD + ++ G+ VI S E
Sbjct: 622 --NTLNQI------STQFIP--KAAPKAPIGFIPKTGDRIRITKIGQTAEVITPPNSDGE 671
Query: 825 IVVQVGNMKWIMKFTDI 841
+ V+ G MK +K DI
Sbjct: 672 LNVRFGIMKMTVKLEDI 688
>gi|86607201|ref|YP_475964.1| recombination and DNA strand exchange inhibitor protein
[Synechococcus sp. JA-3-3Ab]
gi|86555743|gb|ABD00701.1| MutS2 family protein [Synechococcus sp. JA-3-3Ab]
Length = 799
Score = 319 bits (817), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 229/670 (34%), Positives = 343/670 (51%), Gaps = 110/670 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLT-QLWSINQTYQDSLRLLDETNAAIEMQKHG 110
E+L +LEW +LC ++SFA T LGR A L W ++ +S LD+T AI +
Sbjct: 23 ETLELLEWPRLCQHLASFAATPLGRRACLELDPW---RSRAESEVCLDQTEEAIRLDCSQ 79
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
+ L G+ L A+ R L E L+Q + TL + R DAD
Sbjct: 80 PGGISLDGIHNLL--PALERAERGGILSGEE------LVQIATTLGAARRLRRLIDAD-- 129
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPAL-------KQSRGQVQ-MLE 222
R L + + L L + I + +DE G ++DSAS AL +Q R Q+Q L+
Sbjct: 130 ERLPRLQEWVSNLRTYPELEQEIFRCLDEHGEVRDSASAALADLRRQHRQYRSQIQERLQ 189
Query: 223 RKLYQ----LMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLL-SSSSGIGSV 277
+ + Q L D LI + L V + H L +G++ SS+SG
Sbjct: 190 QVMSQHPQALQDTLI-GQRQGRFVLMVKATHRDL----------IRGIVHDSSASGATLY 238
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
+EP + V L + L++ +A + EE +L AL+ ++ +++E + ++ L+V ARA
Sbjct: 239 VEPYAVVELGNRLRETQAQIQAEEERILAALSAQVGSVAEDLEHLQAVMVGLEVALARAR 298
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
YSL GG P F+P ++ L +A HPLLL Q ++
Sbjct: 299 YSLWLGGNRPQ-FVPAGLR----------------------LRQARHPLLLWQSRE---- 331
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
E E+ +PID ++ R
Sbjct: 332 -----EGKGPEV-----------------------------------IPIDFTLSESIRA 351
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
+VITGPNTGGKT+ LKT+GL V+MAK+G+ + + + ++PWFD V+ADIGDEQSL QSLS
Sbjct: 352 VVITGPNTGGKTVALKTLGLLVLMAKAGIFLPAQDPPQLPWFDGVYADIGDEQSLQQSLS 411
Query: 518 TFSGHLKQIGNIISQSTSQ---SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIA 574
TFSGH+++I I+ S+ +LVLLDE+GAGT+P EG AL LLE AE +LLT+A
Sbjct: 412 TFSGHIRRISRIVQALQSEPAPALVLLDEVGAGTDPSEGAALAAGLLEYLAEK-ALLTLA 470
Query: 575 TTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQ 634
TTH+GELK LKY + FENA +EFDE L PTY++LWG+PGRS+A+ IA RL L +++
Sbjct: 471 TTHYGELKALKYQHPGFENASVEFDEATLAPTYRLLWGIPGRSNALAIARRLHLEPEILR 530
Query: 635 NARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCA 694
A+Q + +++++VI +E + Q E + L++ + + R++ E A
Sbjct: 531 RAQQ-HLQGESQVDKVIAGLEAQRAQLEERAAQVGSLHQELETLYRQMQQRSRQMAEREA 589
Query: 695 SQRFRKVQKI 704
+R+ Q +
Sbjct: 590 QLEYRQQQGL 599
>gi|443327052|ref|ZP_21055687.1| MutS2 family protein [Xenococcus sp. PCC 7305]
gi|442793341|gb|ELS02793.1| MutS2 family protein [Xenococcus sp. PCC 7305]
Length = 804
Score = 318 bits (816), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 245/807 (30%), Positives = 389/807 (48%), Gaps = 133/807 (16%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
+ E+L +LEW +LC +++FA T +G A Q + Q+ + SL+LL +T +++
Sbjct: 2 ITTETLNLLEWHRLCEHLATFAETKIG--AVAAQNLQLPQSKEVSLQLLAQTTEIYNLEQ 59
Query: 109 HGSCSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
GV D+ + A+ + L E L + L L+ + + +E
Sbjct: 60 ELDSGWTFRGVKDIGV---ALERTKIGGILSAQELLDIATTLAGIRYLRRIIDSKTEE-- 114
Query: 168 DLYIRFMP-LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
+P L ++I + + + I +D+ G I D A+P + R +V+ L R++
Sbjct: 115 ------LPVLNELIFPVRTYPEIEQQIHHCIDDRGEITDRANPRIAGIRAKVKSLRRQIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLLS-SSSGIGSVIEPLSAV 284
Q + +I++ ++ R I Q + G++ SS+G IEP S V
Sbjct: 169 QSLQRIIQSNLGSVQEAVITQRSDRFVIPVKPGQKETIPGIVHDVSSTGSTLYIEPSSVV 228
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
+ L+QA + EE VL LTEK+ +++E++L LD+ ARA YSL
Sbjct: 229 NAGNALRQAEKQQKREEEIVLRELTEKITEVQEDLEELLAIATVLDLATARARYSLWLEA 288
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
P ER T+ L + HPLL+ Q K ++
Sbjct: 289 NPPRFI---------------------ERSETVTLRRLQHPLLVWQQKHES--------- 318
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
G A VPID+ I +TRV+ ITGPN
Sbjct: 319 ------------GTAV------------------------VPIDVKIEPQTRVVAITGPN 342
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKT+GLA +MAK+G+ + + ++PWF++V ADIGDEQSL QSLSTFSGH++
Sbjct: 343 TGGKTVTLKTIGLAALMAKAGIFVPAKVPVEIPWFNTVLADIGDEQSLQQSLSTFSGHIR 402
Query: 525 QIGNIIS---------QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 575
+I II + S SLVLLDE+GAGT+P EG+AL ++LL+ AE SLLT+AT
Sbjct: 403 RISRIIEALKPQEELKANCSNSLVLLDEVGAGTDPAEGSALAIALLKYLAEH-SLLTVAT 461
Query: 576 THHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQN 635
TH+GELK LKY ++ FENA +EFD+ L+PTY++LWG+PGRS+A+ IA+RLGL +V +
Sbjct: 462 THYGELKALKYQDERFENASVEFDDSSLQPTYRLLWGIPGRSNALTIAQRLGLDSEIVTD 521
Query: 636 ARQLYG-AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCA 694
A+ L G + ++N+VI +E + + EA L + ++ +
Sbjct: 522 AQNLVGIGKTDDVNQVIAALENQRREQESKAEEAGKLLSQTELFYEEV------------ 569
Query: 695 SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG 754
SQR +Q +++ K+ Q+ A + V +R QQ +A ++ T+
Sbjct: 570 SQRAESLQAREQELKLSQ---EKAVQKAIAEAKAEIAQVIRRLQQGNQTAQKAQQATEA- 625
Query: 755 KNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGT 814
++K+ + ++ K P P VG+ V + + G
Sbjct: 626 --------------LNKI----ASKQAIAKPKAPKPGYH----PQVGEKVRIPRLNQTGE 663
Query: 815 VIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V+ +E + ++ V+ G MK + T+I
Sbjct: 664 VLSIEENS-QLTVRFGLMKMTVGVTEI 689
>gi|86609812|ref|YP_478574.1| recombination and DNA strand exchange inhibitor protein
[Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558354|gb|ABD03311.1| MutS2 family protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 805
Score = 318 bits (815), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 262/806 (32%), Positives = 386/806 (47%), Gaps = 157/806 (19%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLT-QLWSINQTYQDSLRLLDETNAAIEMQKHG 110
E+L +LEW +LC +++FA T LGR A L W Q+ DS L++T AI + +
Sbjct: 25 ETLELLEWPRLCQHLATFAATPLGRRACLELDPW---QSRADSEAYLEQTEEAIRLDRTQ 81
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
+ L + G+ L A+ R L E L+Q + TL + R I+ D +
Sbjct: 82 AGGLSMAGIHNLL--PALERAERGGILSGEE------LVQIATTLGAARR--IRRLIDDH 131
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQV------------ 218
L + L L + I + ++E G ++DSASP L R Q
Sbjct: 132 DHLPRLQTWVSTLRTYPELEQEIFRCLEEHGEVRDSASPTLADLRQQQRRQRSQIQEQLQ 191
Query: 219 QMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLL-SSSSGIGSV 277
Q++ + L D LI + L V + H L +G++ SS+SG
Sbjct: 192 QLMSQYPQALQDTLI-GQRQGRFVLMVKATHRDL----------IRGIVHDSSASGATLY 240
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
+EP + V L + ++ + + EE +L AL+ ++ ++E + ++ LDV AR
Sbjct: 241 VEPYAVVELGNRWRETQVQIQAEEERILAALSAQVAAVATDLEHLQGVMVGLDVALARGR 300
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
YSL G P VS+ R L +A HPLLL
Sbjct: 301 YSLWLEGNRPQF------------------VSAGLR-----LRQAKHPLLL--------- 328
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
W+ +A PSE Q SA+ VPID +A RV
Sbjct: 329 -WQSRAAA-------------------------PSEGQGSAV-----VPIDFTLADSIRV 357
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
+VITGPNTGGKT+ LKT+GL V+MAK+G+ + + + ++PWFD V+ADIGDEQSL Q+LS
Sbjct: 358 VVITGPNTGGKTVALKTLGLLVLMAKAGIFLPAQDPPQLPWFDGVYADIGDEQSLQQNLS 417
Query: 518 TFSGHLKQIGNIIS--QSTSQ-SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIA 574
TFSGH+++I I+ QS + +LVLLDE+GAGT+P EG AL LLE +E +LLT+A
Sbjct: 418 TFSGHIRRISRIVQALQSAPEPALVLLDEVGAGTDPTEGAALAAGLLEYLSER-ALLTLA 476
Query: 575 TTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL-PGIVV 633
TTH+GELK LKY + FENA +EFDEV L PTY++LWG+PGRS+A+ IA+RL L P I+
Sbjct: 477 TTHYGELKALKYQHPCFENASVEFDEVTLAPTYRLLWGIPGRSNALAIAQRLQLDPEILR 536
Query: 634 QNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHC 693
+ R L G ++++ VI +E + Q E + +L++ + + R+I E
Sbjct: 537 RAQRHLQG--ESQVDRVIAGLEAQRAQLEERAAQVGSLHRELESLYQQMQQRSRQIAERE 594
Query: 694 ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKV 753
A ++ Q++ Q L +A Q + +R QQ
Sbjct: 595 ARLEQKQNQEL---------------QALLAAARQEVAAAIRRLQQ-------------- 625
Query: 754 GKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKG 813
G++ +T+ Q P P V +P VGD V + G+ G
Sbjct: 626 GEDPQRITAELAQIQQRYSPPP--------------PPVDMEFVPEVGDRVRLRGLGQTG 671
Query: 814 TVIKVEPSKEEIVVQVGNMKWIMKFT 839
VI +E + VV+ G I+KFT
Sbjct: 672 EVIAIE--GDVYVVRSG----ILKFT 691
>gi|172036803|ref|YP_001803304.1| recombination and DNA strand exchange inhibitor protein [Cyanothece
sp. ATCC 51142]
gi|354554613|ref|ZP_08973917.1| MutS2 protein [Cyanothece sp. ATCC 51472]
gi|171698257|gb|ACB51238.1| DNA mismatch repair protein [Cyanothece sp. ATCC 51142]
gi|353553422|gb|EHC22814.1| MutS2 protein [Cyanothece sp. ATCC 51472]
Length = 817
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 241/822 (29%), Positives = 387/822 (47%), Gaps = 149/822 (18%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
+ E+L +LEW +LC +++FA T +G AT + I + Q+S LL +T +++
Sbjct: 2 IYKETLNLLEWHRLCQQLATFAATKMG--ATAARNLPIPTSLQESKELLAQTQEIYGLEQ 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETL--QLSLRAAIKED 166
+ G+ + + + + L+ N L+ LL + TL LR I +
Sbjct: 60 NLEIKWTFEGI------TDVGDSLTRATLKGN--LSGQELLNIATTLAGMRRLRRIIDDC 111
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
DL + LT ++ + L K+I +DE G + D ASP L + R ++ + ++Y
Sbjct: 112 EDLPV----LTDLVADIRTYPELEKAIHHCIDEAGKVADRASPKLGEIRHNLKEIRDRIY 167
Query: 227 QLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAV 284
+ + +++ + ++ R + A Q ++ +SG G IEP S V
Sbjct: 168 EKLQNIMQQKGGAIQETVITQRGDRFVLPVKAGQKEQIPGIIHDTSGTGGTFYIEPNSVV 227
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
+ ++ +Q + EE +L +LTE++ +++E +L LD+ ARA YS GG
Sbjct: 228 QMGNKRRQYLRQEEREEEAILRSLTEQVAEVAEDLEYLLAIATVLDLATARARYSFWLGG 287
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
+P E TI L + +HPLL+ W+
Sbjct: 288 NAPRFI---------------------EDTETITLRQLHHPLLV----------WQ---- 312
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
E+ SP VPI++ I RV+ ITGPN
Sbjct: 313 -------------------ERHEQGSPV------------VPINVQINPDIRVIAITGPN 341
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKTVGLA +MAK GL + + E ++PWF+ + ADIGDEQS+ Q+LSTFSGH++
Sbjct: 342 TGGKTVTLKTVGLAALMAKVGLFVPAKEPVELPWFEQILADIGDEQSIEQNLSTFSGHIR 401
Query: 525 QIGNIIS-------------------------QSTSQSLVLLDEIGAGTNPLEGTALGMS 559
+I I+ + SL+LLDE+GAGT+P EG+AL ++
Sbjct: 402 RIVRILEALEGTGDPPLTNGGGEQKTVLSETPHTPHPSLILLDEVGAGTDPAEGSALAIA 461
Query: 560 LLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSA 619
LL A+ LTIATTH+GELK LKY + FENA +EFD+ L PTY++LWG+PGRS+A
Sbjct: 462 LLHHLADHAQ-LTIATTHYGELKALKYEDSRFENASVEFDDRTLSPTYRLLWGIPGRSNA 520
Query: 620 INIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLH 679
++IA+RLGL ++ A+ G S ++N+VI +E + + E EA+ L + +
Sbjct: 521 LSIAQRLGLDVDIIDEAKTRIGGLSQDVNDVIAGLEAQRREQEEKAQEAQKLLQETEKFY 580
Query: 680 KNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQ 739
+ + + + + Q++ A A A+ + A RSL Q+
Sbjct: 581 TEVSEKATALQQREQDLKRYQEQEVQKAIAEAKEEI----------AQVIRSL-----QK 625
Query: 740 LRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPN 799
+ S+ ++ T+ +N Q + K K P+V P
Sbjct: 626 GKKSSQKAQQATEA-------ITNISQRQLPK---------------KAKPKVSYQ--PQ 661
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
VG+ + +S+ G+ V+ V P EE++V+ G MK + F DI
Sbjct: 662 VGEKIRLSNLGQTAEVLAVSPEDEEVMVRFGLMKMTVSFKDI 703
>gi|427733731|ref|YP_007053275.1| MutS2 family protein [Rivularia sp. PCC 7116]
gi|427368772|gb|AFY52728.1| MutS2 family protein [Rivularia sp. PCC 7116]
Length = 817
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 263/831 (31%), Positives = 386/831 (46%), Gaps = 171/831 (20%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +S+FA T LG A + +I + +S LL +T E++
Sbjct: 5 ETLELLEWSRLCQHLSTFAATKLG--AIAARNIAIPDSQVESEYLLAQTKEVYELENRLD 62
Query: 112 CSLDLTGV-DL--SLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
+ G+ D SL ++ ++ + L +E LA+ L +LR I D
Sbjct: 63 NGISFEGIQDFGDSLERAELKGI-----LAGDELLAIATTLAGIR----NLRRLIDNHPD 113
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASP-------ALKQSRGQVQML 221
L I L +++ L L K I + +DE G + D AS +L+QSR Q+
Sbjct: 114 LEI----LNELVADLRTYPELEKEIHRCIDERGQVTDRASEKLGDIRNSLRQSRSQIT-- 167
Query: 222 ERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIE 279
RKL ++ + N E++ + S R I A Q + G++ +S+SG +E
Sbjct: 168 -RKLQNIIQVKA-NALQETIITQRSD---RFVIPVKAPQKDAIPGIVHDTSTSGATLYVE 222
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKM-QVDLDEIEKMLNGIIQLDVVNARATY 338
P S VP+ ++L+Q EE + L+E++ +V LD +EK+L LD+ A+A Y
Sbjct: 223 PNSIVPMGNQLRQLLRREQVEEEAIRRKLSEQVAEVKLD-LEKLLAVATTLDLATAKARY 281
Query: 339 SLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQ 396
S P P E I L + HPLL+ QQH+Q
Sbjct: 282 SFWLKANPPRFIQPS--------------------EENITLRELRHPLLVWQQQHEQ--- 318
Query: 397 QAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV-PIDIFIARKT 455
H V P+++ I
Sbjct: 319 ---------------------------------------------GHEVIPVNLVIHPYI 333
Query: 456 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 515
RV+ ITGPNTGGKT+ LKT+G A +MAK GL + + E ++PWFD V ADIGDEQSL QS
Sbjct: 334 RVVTITGPNTGGKTVTLKTLGFATLMAKIGLFVPAREPVELPWFDRVLADIGDEQSLEQS 393
Query: 516 LSTFSGHLKQIGNIIS-------------------------QSTSQSLVLLDEIGAGTNP 550
LSTFSGH+++I I+ T SLVLLDE+GAGT+P
Sbjct: 394 LSTFSGHIRRISRILDAVSHVKVEEAQTAEKAEQEENTSLPSPTPSSLVLLDEVGAGTDP 453
Query: 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKIL 610
+EG+AL ++LL A++ S+LTIATTH GELK LKY ++ FENA +EFDE L PTY++L
Sbjct: 454 VEGSALAIALLRYLADN-SMLTIATTHFGELKALKYQDERFENASVEFDEATLSPTYRLL 512
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
WG+PGRS+A+ IA RLGL VV+ A+ G A+ E+N+VI +E + + E +A+
Sbjct: 513 WGIPGRSNALAIASRLGLKPEVVEKAKDEMGGATDEVNQVIAGLEAQRRRQEEKATQAQD 572
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
L + +K + + E S R Q+I + QQ SA
Sbjct: 573 LLQQAERFYKEVSAKAADLEEREKS--LRASQEI-------------AVQQAIASAKGEI 617
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
+ V KR QQ P+A + T + + L F + K E P
Sbjct: 618 AAVIKRLQQGNPTAQDAKKAT---DSINKLADRF----IPKAE----------------P 654
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ K +P VG+ + + G+ V+ E V+ G MK +K D+
Sbjct: 655 KPKAGFMPKVGERIRIPKLGQTAEVLTAPDEDGEFNVRFGIMKMTVKLKDV 705
>gi|434391179|ref|YP_007126126.1| MutS2 protein [Gloeocapsa sp. PCC 7428]
gi|428263020|gb|AFZ28966.1| MutS2 protein [Gloeocapsa sp. PCC 7428]
Length = 804
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 253/801 (31%), Positives = 382/801 (47%), Gaps = 129/801 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +S+FA T LG AT + I Q+ + S LL +T A +++ +
Sbjct: 5 ETLELLEWSRLCQHLSTFAATKLG--ATAARNLQIPQSQKQSEALLAQTQEAYQLENSLT 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + A+ V+R L E LA+ L + LR AI D+ +
Sbjct: 63 GGLSFDGI--QDIGDALTRVQRQGILTGEELLAIATTLAGTR----QLRRAIDNQPDVPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L+ ++ + + + I + +DE G + D AS L R ++ + ++ Q +
Sbjct: 117 ----LSALVEDIRTYPEIEQEIHRCIDERGQVSDRASTTLSNIRSSLRQIRSQITQKLQN 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + N ++ R I A Q + G++ +S+SG +EP S VPL ++
Sbjct: 173 ILQRQANAVQEQLITKRGDRFVIPVKAPQKDAIPGIVHDTSTSGATLYVEPNSVVPLGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q E + L+E++ ++E +L+ LD+ ARA YS P
Sbjct: 233 LRQLTVKEQAEETAIRRQLSEQIAAVTPDLEHLLSVATILDLACARARYSYWLKANPPRF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQ--HKQKTQQAWKDLESANT 407
+ E E TI L + +HPLL+ Q H+Q
Sbjct: 293 ------------------IQRGEGE-TITLRQLHHPLLVWQFAHEQ-------------- 319
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
G A VP+D+ I + RV+ ITGPNTGG
Sbjct: 320 ---------GTAV------------------------VPVDLVIKPQIRVVTITGPNTGG 346
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT+GLA +MAK GL + + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I
Sbjct: 347 KTVTLKTLGLAALMAKVGLFVPAREPVEIPWFDQVLADIGDEQSLQQSLSTFSGHIRRIS 406
Query: 528 NIISQ-STSQ------SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
II S +Q SLVLLDE+GAGT+P EG+AL ++LL+ A+ + L+IATTH GE
Sbjct: 407 RIIDALSNTQALTPHSSLVLLDEVGAGTDPAEGSALAIALLQYLADH-TQLSIATTHFGE 465
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK LKY ++ FENA +EFDE L PTY++LWG+PGRS+A+ IA RLGL VV+ A+
Sbjct: 466 LKALKYQDERFENASVEFDEESLSPTYRLLWGIPGRSNALTIARRLGLNAEVVEQAKTKI 525
Query: 641 GAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRK 700
G A+ ++N+VI +E + EA L + L+ + + ++ E A R ++
Sbjct: 526 GGATEDVNQVIAGLEAQRRLQETKAAEAEQLLQQVQRLYTEVSQKAAQLQEREAHLRQQQ 585
Query: 701 VQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVL 760
Q I A A+S + + ++L Q S + AQQ A+ +L T++ KN
Sbjct: 586 EQSIQQALVQAKSEIAQVIRRL-----QQGSTTAQDAQQ----ATNAL--TQIAKN---- 630
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
H Q VGD + + + VI
Sbjct: 631 -------------HLPPPPKPKPGFKPQ-----------VGDRIRIPRLEQTAEVISAPD 666
Query: 821 SKEEIVVQVGNMKWIMKFTDI 841
E+ V+ G MK +K DI
Sbjct: 667 EDGELSVRFGIMKMNVKLEDI 687
>gi|428776360|ref|YP_007168147.1| MutS2 family protein [Halothece sp. PCC 7418]
gi|428690639|gb|AFZ43933.1| MutS2 family protein [Halothece sp. PCC 7418]
Length = 812
Score = 316 bits (810), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 255/816 (31%), Positives = 390/816 (47%), Gaps = 146/816 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +L +++F T LG A + I + SL LL ET ++++ +
Sbjct: 5 ETLDLLEWRRLGEHLATFTSTKLG--AYAARHLPIPDNRETSLTLLTETKEVYALEENLT 62
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETL--QLSLRAAIKEDAD 168
G+ D S SA+ L LLQ + TL LR I E D
Sbjct: 63 SGWKFDGIYDFS---SALERAEYKGILEGE------TLLQIATTLAGMRRLRRVIDELED 113
Query: 169 LYIRFMP-LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
P L ++I Q+ L K I + +D+ G + + ASP L + R ++ ++YQ
Sbjct: 114 -----SPRLKELISQIRTYPELEKEINRCLDDKGKVTERASPKLGEIRQNLKERRDRIYQ 168
Query: 228 LMDMLIRNENNESLFLEVSSIHGR---LCIRTGADQLSFKGLLL-SSSSGIGSVIEPLSA 283
+ +++ ++ ++ V + G L ++ G + S +G++ SS SG IEP S
Sbjct: 169 KLQNIMQQQSG-AIQEPVITQRGERFVLPVKAGHKE-SIRGIVHDSSGSGATLYIEPNSI 226
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V L ++ +Q + EE +L ALTE++ +++E +L +LD+ AR+ YSL
Sbjct: 227 VELGNQQRQYLRQEKREEERILQALTEEVAEVKEDLELLLAIATKLDLATARSRYSLWLE 286
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
P S + EP+T L + HPLL+ QH
Sbjct: 287 ANPPQFV------ESNSREPIT-------------LRRLRHPLLVWQHHH---------- 317
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
E+ T + VPID+ I +TRV+ ITGP
Sbjct: 318 --------------------EQGTPV---------------VPIDVQIDPETRVVAITGP 342
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKTVGLA +MAK GL I + E ++PWF+ V ADIGDEQS+ QSLSTFSGH+
Sbjct: 343 NTGGKTVTLKTVGLAALMAKVGLFIPAKEPVEIPWFEQVLADIGDEQSIEQSLSTFSGHI 402
Query: 524 KQIGNII------------------SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565
++I II ++ SLVLLDE+GAGT+P EG+A+ ++LL+ A
Sbjct: 403 RRITRIIDALHPSSIDHPEANEDADGETIKLSLVLLDEVGAGTDPAEGSAIAIALLQYLA 462
Query: 566 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAER 625
+ LTIATTH+GELK LKY ++ FENA +EFD+ L PTY++LWG+PGRS+A+ IA R
Sbjct: 463 -ARVRLTIATTHYGELKALKYQDERFENASVEFDDETLSPTYRLLWGIPGRSNALTIARR 521
Query: 626 LGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRT 685
LGL ++ A+ G S +IN+VI +E+ + + E EAR L + ++ + +
Sbjct: 522 LGLDPEILDLAKNKMGGYSEDINQVISGLEKQRREQEEKAREARQLLEQAEKFYQE-VSS 580
Query: 686 RRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSAS 745
R K LE + A + RS Q + + S+AR + + +QL+
Sbjct: 581 RAKALE-------------AREADLKRS----QEQAVNEAVSEARQEIAQVIKQLQ---- 619
Query: 746 QSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVH 805
K G+ T+ + P T P+ K P VG+ V
Sbjct: 620 ---QGQKTGQAAQKATATVNEIAGRHRPQPET------------PKPKPQYQPQVGEQVR 664
Query: 806 VSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ F + G V+ ++ ++ ++ G MK + DI
Sbjct: 665 LPKFNQTGEVLTAPNAEGKLTIRFGLMKMTVSLADI 700
>gi|443312975|ref|ZP_21042589.1| MutS2 family protein [Synechocystis sp. PCC 7509]
gi|442777125|gb|ELR87404.1| MutS2 family protein [Synechocystis sp. PCC 7509]
Length = 792
Score = 315 bits (808), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 237/796 (29%), Positives = 382/796 (47%), Gaps = 124/796 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +S+FA T LG A I + S LL +T +++ +
Sbjct: 5 ETLELLEWSRLCQHLSTFAATKLGSIAARN--LQIPASQLQSEELLAQTKEVYDLETRLT 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + ++ + L NE L + L + LR I D+ +
Sbjct: 63 TGLAFDGI--QDIGDSVERAQLQGILAGNELLEIATTLFGAR----QLRRFIDNQPDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
LTQ++ +L L + I + +DE G + D +SP L R Q++ L ++ + +
Sbjct: 117 ----LTQLVSELRTYPELEQEIHRCIDERGQVTDRSSPILGDLRTQIKQLRTQINRSLQN 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + N ++ R I A Q + G++ +S+SG +EP VPL ++
Sbjct: 173 ILQRQANAVQEQIITQRGDRFVIPVKAPQKDAIPGIVHDTSTSGATLYVEPSGVVPLGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q EE + LT+ + +++E++L +D+ ARA YS P
Sbjct: 233 LRQLVRKEQVEEEAIRRTLTKLVAEVSEDLERLLAIATTIDLATARARYSFWLKANPPRF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
D + I L + HPLL+ Q +
Sbjct: 293 INRNDGE-------------------MINLRQLRHPLLVWQQQH---------------- 317
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKT 469
E+D N+ VP+D+FI RV+ ITGPNTGGKT
Sbjct: 318 --------------EQDRNV---------------VPVDLFIQPNIRVVTITGPNTGGKT 348
Query: 470 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 529
+ LKT+GLA +MAK GL I + E ++PWF+ V DIGDEQSL QSLSTFSGH+++I I
Sbjct: 349 VTLKTLGLAALMAKVGLFIPAREPVEMPWFEQVLTDIGDEQSLEQSLSTFSGHIRRISRI 408
Query: 530 IS--QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
++ + SLVLLDE+GAGT+P+EG+AL +SLL A + L+IATTH GELK LKY
Sbjct: 409 LTAIDKSGSSLVLLDEVGAGTDPVEGSALAISLLHYLANNAQ-LSIATTHFGELKALKYQ 467
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
+D FENA +EFDE+ L PTY++LWG+PGRS+A+ IAERLGL V++ A++ G A+ ++
Sbjct: 468 DDRFENASVEFDEISLSPTYRLLWGIPGRSNALTIAERLGLKLEVIEEAKKHLGGANDDV 527
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
N+VI +E + + EA +K+LE ++RF + A
Sbjct: 528 NQVIAGLEAQRKRQETKATEA------------------QKLLEQ--AERFYQEVSAKAA 567
Query: 708 AAIARSLVHKSAQQLC--PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQ 765
A AR +++Q + + S+A+ + + ++L+ ++ + + + +N+
Sbjct: 568 ALQARERDLRASQDVVVQKAISEAKGEIAQVIRRLQKGTVTAMDAQQATNELNQIAANY- 626
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEI 825
+ P+ K P +GD + + G+ V+ + + ++
Sbjct: 627 --------------------VAPPPKPKPGFKPQIGDRLRIPKLGQTAEVLSIPSDEGDL 666
Query: 826 VVQVGNMKWIMKFTDI 841
+V+ G MK + DI
Sbjct: 667 IVRFGIMKMTVNLEDI 682
>gi|427417145|ref|ZP_18907328.1| MutS2 family protein [Leptolyngbya sp. PCC 7375]
gi|425759858|gb|EKV00711.1| MutS2 family protein [Leptolyngbya sp. PCC 7375]
Length = 818
Score = 315 bits (808), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 247/812 (30%), Positives = 382/812 (47%), Gaps = 135/812 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC ++FA T LG A + I + +S +LL +T A +++
Sbjct: 5 ETLDLLEWPRLCQQWATFAATKLG--ALAARHGRIPEHQSESEQLLAQTREAYRLEE--K 60
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ GV+ + A+ +R + L +E L + L + L+ ++ A +E
Sbjct: 61 SPLNFRGVED--MGDALERAKRQAILSGDELLHIATTLAGARQLRRTIDAQEEE------ 112
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
F L ++ QL L K I +D+ G + D A+P L R ++ +L+ +
Sbjct: 113 AFPVLQALVGQLRTYPELEKEIHHCIDDRGKVTDRANPKLAGIRKNLKNTHDQLHAKLQR 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
+++ + ++ GR I A Q S G++ S+SG IEP V +
Sbjct: 173 IMQRHSGVLQETLITQRAGRFVIPVKAPQKESIPGIVHDVSTSGATLYIEPQGVVEFGNR 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q T+ EE V LTE++ +++E+++ + LD+ ARA YSL P
Sbjct: 233 LRQLERQETREEELVRQRLTEQVAAVSEDLEQLMAIVTTLDLATARARYSLWLEANPPRF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
SE L + HP+L+ Q + +
Sbjct: 293 ---------------------SEANERTVLRQLRHPILVWQQRHE--------------- 316
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKT 469
E VP DI + RV+ ITGPNTGGKT
Sbjct: 317 ------------------------------EGPTVVPTDITMRPDIRVVAITGPNTGGKT 346
Query: 470 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 529
+ LKT+GLA +MAK GL + + E ++PWFD V ADIGDEQS+ QSLSTFSGH+++IG I
Sbjct: 347 VTLKTLGLAALMAKVGLFVPAREPVELPWFDQVLADIGDEQSIEQSLSTFSGHIRRIGRI 406
Query: 530 I------------------SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLL 571
+ + + SLVLLDE+GAGT+P EG+AL +SLL+ A + L
Sbjct: 407 LDAIGADGVDDAGNTASMGTAHPTNSLVLLDEVGAGTDPTEGSALAISLLQHLANH-TRL 465
Query: 572 TIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGI 631
T+ATTH GELK LKY ++ FENA +EFD+V L PTY++LWG+PGRS+A+ IA RLGL
Sbjct: 466 TVATTHFGELKALKYQDERFENASVEFDDVSLSPTYRLLWGIPGRSNALTIARRLGLNPN 525
Query: 632 VVQNARQLYGAASA-EINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKIL 690
V+ A+ G + ++N+VI +E + + + +A + + L ++ R I
Sbjct: 526 VIDTAQTYVGVSKQDDVNQVIAGLEAQRKRQEDQAKQAAGIVAQAEALKTDIERKAAAIK 585
Query: 691 EHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHC 750
E SQ+ + + I A A A++ + +QL Q+ P+A +
Sbjct: 586 EWERSQKLEQEKAIQAAVAEAKAEIATVIRQL---------------QKGNPTAQAAQRA 630
Query: 751 TKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFG 810
T+ ++ QQ V K HPA V+ D K P +G+ V + G
Sbjct: 631 TE------LVEDIAQQQQVPKGNHPA---KKVITDYK----------PKLGEKVRLIGLG 671
Query: 811 KKGTVIKVEP-SKEEIVVQVGNMKWIMKFTDI 841
+ + EP S ++ V+ G MK I+ +DI
Sbjct: 672 GQTAEVVGEPDSDGKVAVRFGLMKTIVDLSDI 703
>gi|428778485|ref|YP_007170271.1| MutS2 family protein [Dactylococcopsis salina PCC 8305]
gi|428692764|gb|AFZ48914.1| MutS2 family protein [Dactylococcopsis salina PCC 8305]
Length = 798
Score = 315 bits (807), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 246/801 (30%), Positives = 393/801 (49%), Gaps = 128/801 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +L +++F T LG A + + I + SL LL ET +++ + +
Sbjct: 5 ETLSLLEWQRLGEHLATFTSTKLG--ARVARNLPIPDHRETSLTLLTETKEVYQLEANLT 62
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
G+ D SA+ L LLQ + TL +++R ++ D
Sbjct: 63 TGWKFEGIYDFG---SALERAEYKG------ILTGETLLQIATTL-VAMRR-LRRVIDGL 111
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
L +I Q+ L K I + +D+ G + + ASP L + R +++ ++YQ +
Sbjct: 112 EASPRLKALISQVRTYPELEKEINRCLDDKGKVTERASPKLAEIRQKIKERRDRIYQKLQ 171
Query: 231 MLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLND 288
+I+ + ++ + R + A Q S +G++ SSS+G IEP S V L +
Sbjct: 172 NIIQQQGGAIQEPVITQRNDRFVLPVKAGQKESIRGIVHDSSSTGATLYIEPNSVVELGN 231
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
+ +Q + EE VL LTE++ +++E +L +LD+ AR+ YSL P
Sbjct: 232 QQRQYIRQEQREEERVLQVLTEQVATVKEDLELLLAVATKLDLATARSRYSLWLEANPPR 291
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANT 407
++EP+T L + HPLL+ QQH
Sbjct: 292 FV------EGNSNEPIT-------------LRRLRHPLLVWQQHH--------------- 317
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
E+ T + VPID+ I +TRV+ ITGPNTGG
Sbjct: 318 ----------------EQGTPV---------------VPIDVQINPETRVVAITGPNTGG 346
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKTVGLA +MAK GL + + E ++PWFD + ADIGDEQS+ Q+LSTFSGH+++I
Sbjct: 347 KTVTLKTVGLAALMAKVGLFVPAKEPVEIPWFDKILADIGDEQSIEQNLSTFSGHIRRIT 406
Query: 528 NII-----SQSTSQS-LVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
II S S Q L+LLDE+GAGT+P EG+A+ ++LL+ A+ LTIATTH+GEL
Sbjct: 407 RIIDSLQPSDSEIQPCLILLDEVGAGTDPAEGSAIAIALLKYLAQQ-VRLTIATTHYGEL 465
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K LKY ++ FENA +EF++ L PTY++LWG+PGRS+A+ IA RLGL G ++ A+ G
Sbjct: 466 KALKYQDERFENASVEFNDETLSPTYRLLWGIPGRSNALTIARRLGLAGEILDMAKNRIG 525
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
S +IN+VI +E + + E EAR L A + +++V
Sbjct: 526 GGSEDINQVIAGLENQRREQEEKAQEARQLL-------------------EQAEKFYQEV 566
Query: 702 QKISDAAAIARSLVHKSAQQLCPSA-SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVL 760
+ A + + +S +Q A S+A+ + + +QL+ K G+
Sbjct: 567 SSRAQALEARETELKRSQEQAVNQAISEAKQEIAQVIKQLQ-------KGEKTGQEAQKA 619
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
T+ +V+++ +S + + P+ K P +G+ V +S F + G V+
Sbjct: 620 TA-----SVNEI-------ASRHRPQIEPPKPKPNYQPQIGEKVRLSQFNQTGEVLTAPN 667
Query: 821 SKEEIVVQVGNMKWIMKFTDI 841
+ ++ +++G MK + DI
Sbjct: 668 ADGKLTIRLGTMKMSVSLADI 688
>gi|126657853|ref|ZP_01729006.1| recombination and DNA strand exchange inhibitor protein [Cyanothece
sp. CCY0110]
gi|126620793|gb|EAZ91509.1| recombination and DNA strand exchange inhibitor protein [Cyanothece
sp. CCY0110]
Length = 818
Score = 315 bits (806), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 235/823 (28%), Positives = 389/823 (47%), Gaps = 150/823 (18%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
+ E+L +LEW +LC +++FA T +G AT + I + ++S LL++T +++
Sbjct: 2 IYKETLNLLEWPRLCQQLATFAATKMG--ATAARNLPIPTSLEESKELLEQTKEIYRLEQ 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETL--QLSLRAAIKED 166
+ G+ + + + + + L+ N L+ LL + TL LR I++
Sbjct: 60 NLEIKWTFEGI------TDVGDSLKRATLKGN--LSGKELLNIATTLAGMRRLRRIIED- 110
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
Y LT+++ + L K+I +DE G + D AS L + R ++ ++Y
Sbjct: 111 ---YEELPTLTELVADIRTYPELEKTIHHCIDEAGKVADRASTKLGEIRHNLKENRDRIY 167
Query: 227 QLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAV 284
Q + +++ + ++ R + A Q ++ +SG G IEP S V
Sbjct: 168 QKLQNIMQQKGGAIQETVITQRGDRFVLPVKAAQKEQIPGIIHDTSGTGGTFYIEPNSVV 227
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
+ ++ +Q + EE +L L+E++ +++E +L LD+ AR+ YS GG
Sbjct: 228 QMGNKRRQYLRQEEREEEAILRQLSEQVAEVAEDLEYLLAIATILDLATARSRYSFWLGG 287
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
+P E + TI L + +HPLL+ W+
Sbjct: 288 NAPRFI---------------------EDKETITLRQLHHPLLV----------WQ---- 312
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
E+ SP VPI++ I + RV+ ITGPN
Sbjct: 313 -------------------ERHEQGSPV------------VPINVQINPEIRVIAITGPN 341
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKTVGLA +MAK GL + + E ++PWF + ADIGDEQS+ Q+LSTFSGH++
Sbjct: 342 TGGKTVTLKTVGLAALMAKVGLFVPAKEPVELPWFKQILADIGDEQSIEQNLSTFSGHIR 401
Query: 525 QI-----------------------GNIISQSTSQ---SLVLLDEIGAGTNPLEGTALGM 558
+I G+++S++ SL+LLDE+GAGT+P EG+AL +
Sbjct: 402 RIVRILEALDQGTESREQEAGIRDQGSVLSETPHTPHPSLILLDEVGAGTDPAEGSALAI 461
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
+LL A+ L TIATTH+GELK LKY + FENA +EFD+ L PTY++LWG+PGRS+
Sbjct: 462 ALLHHLADHARL-TIATTHYGELKALKYEDSRFENASVEFDDRSLSPTYRLLWGIPGRSN 520
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A++IA+RLGL +V+ A+ G S ++N+VI +E + + E EA+ L +
Sbjct: 521 ALSIAQRLGLDHEIVEEAKTRIGGLSQDVNDVIAGLEAQRREQEEKALEAQKLLQETEKF 580
Query: 679 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
+ + + + + + Q++ A A A+ + + + L Q
Sbjct: 581 YTEVTEKATALQQREQDLKRHQEQEVQKAIAEAKEEIAQVIRNL---------------Q 625
Query: 739 QLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP 798
Q + S+ ++ T+ +N Q + K P + P
Sbjct: 626 QGKKSSQKAQQATEA-------ITNIGQKQLPKKAKPTVSYQ-----------------P 661
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
VG+ + +S+ G+ V+ V P EE++V+ G MK + F DI
Sbjct: 662 KVGEKIRLSNLGQTAEVLDVSPEDEEVMVRFGLMKMTVSFRDI 704
>gi|443320530|ref|ZP_21049624.1| MutS2 family protein [Gloeocapsa sp. PCC 73106]
gi|442789744|gb|ELR99383.1| MutS2 family protein [Gloeocapsa sp. PCC 73106]
Length = 793
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 242/801 (30%), Positives = 384/801 (47%), Gaps = 131/801 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +S+FA T LG A + I S LL +T ++Q+H S
Sbjct: 5 ETLDLLEWRRLCQHLSTFAATKLGVSAARELI--IPSNLATSRELLTQTQEIWQLQEHFS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQ--LSLRAAIKEDADL 169
+ G+ IR + L+ L LL + T+ LR I+E ++
Sbjct: 63 TAWSFQGI------KDIRPFLLRAQLKGT--LLGTELLDIASTVAGVRKLRKIIEEQSET 114
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ L ++ + L + I +DE G ++D AS L + R +++ K+ +++
Sbjct: 115 PV----LENLVATVRTYPELEQEIYYCIDEGGEVEDRASLKLAEIRSKLKEFRNKIQKIL 170
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRTGADQLSFKGLLL-SSSSGIGSVIEPLSAVP 285
+I+ + N E+L + S L ++T + G++ SSS+G +EP + +
Sbjct: 171 QGIIQRQGNALQETLITQRSD-RFVLPVKTPHKE-QIPGIVHDSSSTGSTLYVEPQAIIQ 228
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
L ++L+Q E VL ALTEK+ ++E+++ LD+ ARA YS
Sbjct: 229 LGNQLKQLLRREQAEIEIVLKALTEKVAAITSDLEQVVLVATTLDLATARANYSYWLNAH 288
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
P + S ++E TI L + HPLL+ Q K +
Sbjct: 289 PPQLI-------------------SLDQEATITLRELKHPLLIWQEKHEQ---------- 319
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
G A VPI++ I RV+ ITGPNT
Sbjct: 320 -----------GPAV------------------------VPINVRIQPDIRVVAITGPNT 344
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKT+G+A +MAK GL I +++ ++PWF+ + ADIGDEQSL QSLSTFSGH+K+
Sbjct: 345 GGKTVTLKTIGIAALMAKVGLFIPAADPVEIPWFEKILADIGDEQSLEQSLSTFSGHIKR 404
Query: 526 IGNIIS-----QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
I I+ + +LVLLDE+GAGT+P EGTAL ++LL+ A+S + LTIATTH+GE
Sbjct: 405 IIRILDAIGRPEDLRSALVLLDEVGAGTDPTEGTALAIALLQHLADS-AWLTIATTHYGE 463
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK LKY + FENA +EFDE L PTY++LWG+PGRS+A+ IA RLGL +V+ A+
Sbjct: 464 LKALKYQDSRFENASVEFDEATLAPTYRLLWGIPGRSNALMIARRLGLDLEIVEQAKSKV 523
Query: 641 GAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRK 700
G + EIN+VI +E + + A L + + + S + +
Sbjct: 524 GGYAEEINQVIAGLEAQRKEQENKAQAANQLLQETERFYGEI------------SAKAKA 571
Query: 701 VQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVL 760
+Q+ +A++ Q + + SQA++ + + + L+ + + K N +
Sbjct: 572 LQQREQELKLAQT------QAMQEALSQAKAEIAQVIRTLQQGEQTAQNAQKARGNLETI 625
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
N+ T + +RT P VG+ + + S G+ V+
Sbjct: 626 ADNYLNTQA---------------------KPQRTYQPQVGEKIKIPSLGQTAEVLTNPD 664
Query: 821 SKEEIVVQVGNMKWIMKFTDI 841
++ E+ V+ G MK + +DI
Sbjct: 665 AQGELTVRFGLMKMTVNLSDI 685
>gi|427723948|ref|YP_007071225.1| MutS2 protein [Leptolyngbya sp. PCC 7376]
gi|427355668|gb|AFY38391.1| MutS2 protein [Leptolyngbya sp. PCC 7376]
Length = 801
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 241/818 (29%), Positives = 380/818 (46%), Gaps = 158/818 (19%)
Query: 47 SRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSL--------RLLD 98
+++ E+L +LEW +LC +S+FA T LG A ++ +Q + L L
Sbjct: 2 TQIQTETLNLLEWQRLCQHLSTFAATKLGAIAARNLVFPGSQAESEILLAQTVEITELDA 61
Query: 99 ETNAAIEMQKHGSCSLDL---------TGVDLSLVKSAIREVRRASPLRPNEALAVVALL 149
ET I + G+ S L +G DL L+ + + VR+ L N L + LL
Sbjct: 62 ETEGGISFEGIGNVSESLERATIGGIISGQDLLLIATTLAGVRKLRRLVENSELELPQLL 121
Query: 150 QFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASP 209
E L R P L K I +D+ G + D ASP
Sbjct: 122 FLVEQL----------------RTYP------------ELEKEIHHCIDDRGDVTDRASP 153
Query: 210 ALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL 268
L R +++ +YQ ++ +++ ++ R + A Q G++
Sbjct: 154 KLAGIREKMKGARDGIYQTLNRIMQRHGGSIQEAVITQRGDRFVLPVKAGQKEHIPGIVH 213
Query: 269 S-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGII 327
SS+G +EP + + L + L+QA + E +L LTEK+ ++++EK+L
Sbjct: 214 DISSTGSTFYVEPKAIIDLGNRLRQATKQEQREIEIILRQLTEKVAEVVEDLEKLLAIAT 273
Query: 328 QLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
+D+ AR+ YS P P E L K +HPLL
Sbjct: 274 TIDLATARSRYSHWLEANPPKFTKP---------------------EQPTMLRKLHHPLL 312
Query: 388 LQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPI 447
+ Q KQ+ E VPI
Sbjct: 313 VWQQKQE---------------------------------------------EGDEVVPI 327
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
++ I +V+ ITGPNTGGKT+ LKT+G+A +MAK GL I + ++PWF+ V ADIG
Sbjct: 328 NVQIRPDIKVVAITGPNTGGKTVTLKTLGMAALMAKVGLFIPAIAPVELPWFNHVLADIG 387
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQ---SLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DEQSL QSLSTFSGH++++G II ++ +LVLLDE+GAGT+P EG+AL ++LL+
Sbjct: 388 DEQSLQQSLSTFSGHIRRVGRIIETLQAEDENNLVLLDEVGAGTDPTEGSALAIALLKYL 447
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
A+ +L T+ATTH+GELK LKY +D FENA +EFDE L+PTYK+LWG+PGRS+A+ IA+
Sbjct: 448 ADHAAL-TVATTHYGELKALKYDDDRFENASVEFDEYSLRPTYKLLWGIPGRSNALAIAK 506
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ A+ L G ++ ++NEVI +E + + + EA L + + +
Sbjct: 507 RLGLDEQVIDAAQSLLGNSNTDVNEVIAALEAQRREQEQKSQEAEALLKQTERFYTEVSS 566
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ + + Q++ +A A A+S + A R+L Q+ +PSA
Sbjct: 567 KAADLQRRETELKQAQDQQVQEAIAEAKSEI----------AQVIRTL-----QKGKPSA 611
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL-PNVGDL 803
++ T A + ++ P+ K+ P +G+
Sbjct: 612 QKAQKAT-------------------------NALGEIAQEKLAQPKKKKAGYQPKLGEK 646
Query: 804 VHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ +S G+ VI++ + +V + G MK +++T+I
Sbjct: 647 IRISKLGQTAEVIELNEENKTLVARFGIMKMSLQWTEI 684
>gi|67923383|ref|ZP_00516863.1| MutS 2 protein [Crocosphaera watsonii WH 8501]
gi|67854764|gb|EAM50043.1| MutS 2 protein [Crocosphaera watsonii WH 8501]
Length = 806
Score = 313 bits (802), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 242/814 (29%), Positives = 381/814 (46%), Gaps = 145/814 (17%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
+ E+L +LEW++L +++F T +G A + I + DS LL +T +++
Sbjct: 2 IYRETLNLLEWERLGQHLATFTATKMG--AIAARNLPIPTSLADSKELLAQTQEIYGLEQ 59
Query: 109 HGSCSLDLTG---VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETL--QLSLRAAI 163
+ G V SL ++ ++ + L+ LL + TL LR I
Sbjct: 60 NLEIRWTFEGITDVGDSLKRATLKGI-----------LSGKELLNIATTLAGMRRLRRII 108
Query: 164 KEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
+ +L + L +++ + L K+I +DE G + D ASP L+ R ++ +
Sbjct: 109 DDCEELPV----LKELVADIRTYPELEKAIHHCIDEAGKVTDRASPKLESIRHNLKEVRD 164
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPL 281
++YQ + +I+ + ++ R I A Q + +SG G IEP
Sbjct: 165 RIYQKLQNIIQQKGGAIQEPVITQRGDRFVIPVKAGQKEQIPGITHDTSGTGGTFYIEPN 224
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
S V + ++ +Q + EE +L LTEK+ +++E +L + LD+ ARA YS
Sbjct: 225 SVVQMGNKRRQYLRQEEREEETILRQLTEKIAEVAEDLEYLLAIAMVLDLATARARYSFW 284
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
G P QD + TI L + +HPLL+ Q K
Sbjct: 285 LGANPPRFI--QDKE-------------------TITLRQLHHPLLVWQEKH-------- 315
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV-PIDIFIARKTRVLVI 460
E PV PI++ I RV+ I
Sbjct: 316 --------------------------------------EQGSPVIPINVQIKPDIRVIAI 337
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT+ LKT+GLA +MAK GL + + E ++PWF+ + ADIGDEQS+ Q+LSTFS
Sbjct: 338 TGPNTGGKTVTLKTLGLAALMAKVGLFVPAKEPVEIPWFEKILADIGDEQSIEQNLSTFS 397
Query: 521 GHLKQIGNIIS-------------QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
GH+++I I+ S S SL+LLDE+GAGT+P EG+AL M+LL A+
Sbjct: 398 GHIRRIVRILEALEQATLSPETLPHSPSPSLILLDEVGAGTDPAEGSALAMALLNRLADQ 457
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
LTIATTH+GELK LKY + FENA +EFD+ PTY++LWG+PGRS+A++IA+RLG
Sbjct: 458 AR-LTIATTHYGELKALKYEDSRFENASVEFDDRTFSPTYRLLWGIPGRSNALSIAQRLG 516
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
L V+ A+ G S ++N+VI +E + + E EA+ L + + + +
Sbjct: 517 LDVDVIDEAKTRIGGLSQDVNDVIAGLEAQRRKQEEKAQEAQKLLQQTEKFYGEVTQKAT 576
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
+ E Q ++ Q++ AIA A + + V + Q+ S+ +
Sbjct: 577 ALQER--EQDLKRYQELEVQKAIA-------------DAKEEIAKVIRNLQKGNKSSQNA 621
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVS 807
T+ +N Q + K K P+V + P VG+ + +S
Sbjct: 622 QKATEA-------INNISQRQLPK---------------KVKPKV--SYQPKVGEKIRLS 657
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ G+ V++V EE++V+ G MK + F DI
Sbjct: 658 NLGQTAEVLEVSAEDEEVMVRFGLMKMTVAFRDI 691
>gi|218441797|ref|YP_002380126.1| recombination and DNA strand exchange inhibitor protein [Cyanothece
sp. PCC 7424]
gi|218174525|gb|ACK73258.1| MutS2 family protein [Cyanothece sp. PCC 7424]
Length = 803
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 249/813 (30%), Positives = 396/813 (48%), Gaps = 152/813 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +S+FA T LG A Q + T ++S +LL +T +++ +
Sbjct: 7 ETLDLLEWHRLCQHLSTFAATKLG--AIAAQYMRLPDTKEESCQLLAQTEEVYDLENRLN 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ S + A+ L E L++ L LR I+E ++ +
Sbjct: 65 TKLSFDGI--SDIGDALERADLGGLLSGKELLSIATTLAGVR----RLRRIIEEQEEIPV 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY-QLMD 230
L +++ + + + I + ++EDG + D ASP L++ RGQ++++ ++Y +L D
Sbjct: 119 ----LKELVADVRTYPEIEQDIHRCIEEDGKVSDRASPRLREIRGQIKVVRERIYRKLQD 174
Query: 231 MLIRNEN--NESLFLEVSSIHGRLCIRTGA---DQLSFKGLLL-SSSSGIGSVIEPLSAV 284
++ R ES+ + R + A DQ+S G++ SSS+G IEP S V
Sbjct: 175 IMQRQSGAIQESVITQRGD---RFVLPVKAPQKDQIS--GIIHDSSSTGATLYIEPHSVV 229
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
++L+Q EE +L LT+++ +++E +L LD+ AR+ YS
Sbjct: 230 EQGNQLRQHHRQEQIEEEVILRGLTQQIAQVKEDLEYLLAVATTLDLAVARSRYSWWLQA 289
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
P + EP+T L + HPLL+ W+
Sbjct: 290 NPPRFID--------STEPIT-------------LRQLRHPLLV----------WQQNHE 318
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
E+ VPI++ + K RV+ ITGPN
Sbjct: 319 QGVEV-----------------------------------VPINVQVDPKIRVVAITGPN 343
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKT+GLA +MAK+G+ I + ++PWF+ + ADIGDEQSL QSLSTFSGH++
Sbjct: 344 TGGKTVTLKTIGLATLMAKAGIFIPAKVPVELPWFEEILADIGDEQSLQQSLSTFSGHIR 403
Query: 525 QIGNII----------SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIA 574
++ II ++ + SLVLLDE+GAGT+P EG+AL +LL+ A+ LTIA
Sbjct: 404 RMIRIIEALNGSSPEETKPPASSLVLLDEVGAGTDPAEGSALATALLKYLADQAQ-LTIA 462
Query: 575 TTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQ 634
TTH+GELK LKY ++ FENA +EF++ L PTY++LWG+PGRS+A+ IA RLGL +++
Sbjct: 463 TTHYGELKALKYQDERFENASVEFNDQTLSPTYRLLWGIPGRSNALTIAGRLGLRPEIIE 522
Query: 635 NARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLH------KNLLRTRRK 688
AR G S +IN+VI +E + + + EA L + + N L+ R K
Sbjct: 523 EARTRVGGFSEDINQVIAGLEEQRREQEQKAKEASKLLQETERFYAEVSEKANALQQREK 582
Query: 689 ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL 748
L+ Q +K A A A++ + + +QL + A++ AQ+ A+ +L
Sbjct: 583 DLKQLQEQEIQK------AIAQAKAEIAQVIRQLQQGNTTAQN-----AQK----ATDAL 627
Query: 749 HCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSS 808
T++ + Q + K +HP + P VG+ V +
Sbjct: 628 --TQIAERQ-----------LPKQKHPPISYR-----------------PKVGEKVRIPG 657
Query: 809 FGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
G+ V+ + EE+ V+ G MK + FTDI
Sbjct: 658 LGQTAEVLSLSEESEEVSVRFGIMKMTVPFTDI 690
>gi|428309185|ref|YP_007120162.1| MutS2 family protein [Microcoleus sp. PCC 7113]
gi|428250797|gb|AFZ16756.1| MutS2 family protein [Microcoleus sp. PCC 7113]
Length = 839
Score = 312 bits (799), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 249/839 (29%), Positives = 388/839 (46%), Gaps = 165/839 (19%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L++LEW +LC +++FA T LG A T +SL LL +T +++ +
Sbjct: 5 ETLQLLEWSRLCQHLATFAATKLG--AIAAHHLQPPATLSESLDLLTQTKEVYQLEARLT 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + ++ L E LA+ L LR I + D+ I
Sbjct: 63 SGLSFEGI--QDIGESLERAELQGLLSGEELLAIATTLSGVR----RLRRVIDDQEDVPI 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ ++ L + I +DE G + D ASP L R +++ L ++YQ++
Sbjct: 117 ----LNELVAEVRTYPELEQEIHHSIDERGDVADRASPKLAGIRLKLKSLRDRIYQVLQG 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R I A Q + G++ +SS+G +EP + V L+++
Sbjct: 173 ILQRQGGAVQQQVITQRGDRFVIPVKAPQKDAIPGIVHDTSSTGATVYVEPNAIVGLSNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+ R EE +L ALT+++ ++EK+L LD+ A+A YSL P
Sbjct: 233 LRIHRRQEQTEEEAILRALTQQVAAVKPDLEKLLAVATALDLATAKARYSLWLQANPPRF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQAWKDLESANT 407
Q + TI L + HPLL+ QQH+Q T
Sbjct: 293 IDRQAGE-------------------TITLRELRHPLLVWQQQHEQGT------------ 321
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
P VPI++ I RV+ ITGPNTGG
Sbjct: 322 -----------------------PV------------VPINVQIQPSIRVVAITGPNTGG 346
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT+GLA +MAK GL + + E ++PWFD V ADIGDEQS+ QSLSTFSGH+++I
Sbjct: 347 KTVTLKTLGLAALMAKVGLFVPAREPVELPWFDQVLADIGDEQSIEQSLSTFSGHIRRIS 406
Query: 528 NII---------------------------------------------SQSTSQSLVLLD 542
I+ + + S SLVLLD
Sbjct: 407 RILEAIRGESEALQVDTLLAPRQNSDEDAAQVESWEDDAQTSNLLQPSTPAPSPSLVLLD 466
Query: 543 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 602
E+GAGT+P EG+AL ++LL+ A + L T+ATTH+GELK LKY ++ FENA +EFD+
Sbjct: 467 EVGAGTDPAEGSALAIALLQHLANTAQL-TVATTHYGELKALKYQDERFENASVEFDDST 525
Query: 603 LKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFL 662
L+PTY++LWG+PGRS+A+ +A RLGL VV A+ L G AS +IN+VI +E + +
Sbjct: 526 LQPTYRLLWGIPGRSNALAVARRLGLNPNVVDQAQSLIGGASEDINQVIAGLEAQRRRQE 585
Query: 663 EHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQL 722
EA L + LH+ + R ++L ++R R + K+S A+ +LV
Sbjct: 586 TKAKEATQLLQQAERLHQE-VSDRARLL----NERERTL-KLSQERAVQEALV------- 632
Query: 723 CPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSV 782
QA+ + + + L+ K +N T Q+ ++ PA +
Sbjct: 633 -----QAKEEIAQVIRTLQ-------QGPKSAQNAQKATDALQEIAQRRL--PAKLPA-- 676
Query: 783 VKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
KQ P + P VGD + + + V+ E+ V+ G MK + +D+
Sbjct: 677 ----KQKPSFR----PKVGDRIRIPRLNQTAEVLSAPDEDGELTVRFGLMKMTVLLSDV 727
>gi|16330262|ref|NP_440990.1| recombination and DNA strand exchange inhibitor protein
[Synechocystis sp. PCC 6803]
gi|383322003|ref|YP_005382856.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325172|ref|YP_005386025.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491056|ref|YP_005408732.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436323|ref|YP_005651047.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803]
gi|451814420|ref|YP_007450872.1| DNA mismatch repair protein MutS [Synechocystis sp. PCC 6803]
gi|3914083|sp|P73625.1|MUTS2_SYNY3 RecName: Full=MutS2 protein
gi|1652751|dbj|BAA17670.1| DNA mismatch repair protein; MutS [Synechocystis sp. PCC 6803]
gi|339273355|dbj|BAK49842.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803]
gi|359271322|dbj|BAL28841.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274492|dbj|BAL32010.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277662|dbj|BAL35179.1| DNA mismatch repair protein [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958177|dbj|BAM51417.1| recombination and DNA strand exchange inhibitorprotein [Bacillus
subtilis BEST7613]
gi|451780389|gb|AGF51358.1| DNA mismatch repair protein MutS [Synechocystis sp. PCC 6803]
Length = 822
Score = 310 bits (793), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 247/824 (29%), Positives = 394/824 (47%), Gaps = 144/824 (17%)
Query: 42 SDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETN 101
SD + E+L +LEW +LC +S+F +T LG A + +++S LL +T
Sbjct: 2 SDSTNLTIAEETLALLEWPRLCQHLSTFTQTPLG--AIAARYLLPPSQWEESRELLAQTQ 59
Query: 102 AAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRA 161
A ++ + G+ + + + V R + E LA+ L LR
Sbjct: 60 AVESIENSPESNWHFKGI--ADITEPLARVERGGLVTGLELLAIAGTLAGVR----RLRR 113
Query: 162 AIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQML 221
I+E DL I L ++ ++ L ++I + EDG + + ASP L + R +++ +
Sbjct: 114 VIEERDDLEI----LQTLVAEVRTLPELEQAIHHCLGEDGKVAERASPKLGEIRQKLKAV 169
Query: 222 ERKLYQLMDMLIRNENNESLFLEVSSIHGR-----LCIRTGADQLSFKGLLL-SSSSGIG 275
++ Q + +I+ ++N L+ + I R L I+ G + G++ SS+SG
Sbjct: 170 REQIQQKLQKIIQRQSN---ALQEAVITQRGDRFVLPIKAGYKE-QMPGIVHDSSASGNT 225
Query: 276 SVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNAR 335
+EP + V L ++L+QAR EE +L L++++ L ++E +L +LD+ AR
Sbjct: 226 LYVEPQAIVELGNKLRQARRQEQTEEERILRQLSDQVLEVLLDLEHLLAIATRLDLATAR 285
Query: 336 ATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKT 395
YS G P P D K P+T L + HPLL Q +++
Sbjct: 286 VRYSFWLGAHPPQWLTPGDEK------PIT-------------LRQLRHPLLHWQAEKE- 325
Query: 396 QQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKT 455
GG A VPI + I +
Sbjct: 326 --------------------GGPAV------------------------VPITLTIDSQI 341
Query: 456 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 515
RV+ ITGPNTGGKT+ LKT+GL +MAK GL+I + E ++PWF + ADIGDEQSL Q+
Sbjct: 342 RVIAITGPNTGGKTVTLKTLGLVALMAKVGLYIPAKETVEMPWFAQILADIGDEQSLQQN 401
Query: 516 LSTFSGHLKQIGNIISQSTS------------------QSLVLLDEIGAGTNPLEGTALG 557
LSTFSGH+ +I I+ S SLVLLDE+GAGT+P EG+AL
Sbjct: 402 LSTFSGHICRIIRILQALPSGVQDVLDPEIDSPNHPIFPSLVLLDEVGAGTDPTEGSALA 461
Query: 558 MSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRS 617
++LL A+ LT+ATTH+GELK LKY + FENA +EFD+ L PTY++LWG+PGRS
Sbjct: 462 IALLRHLADQ-PCLTVATTHYGELKALKYQDARFENASVEFDDQSLSPTYRLLWGIPGRS 520
Query: 618 SAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRN 677
+A+ IA+RLGLP +V+ A+ G S +IN+VI +E + + + A+ L +
Sbjct: 521 NALAIAQRLGLPLAIVEQAKDKLGGFSEDINQVIAGLESQRREQEQKAANAQKLLQETEI 580
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
++ ++ + AS + R+ + +S + QQ +A + + V ++
Sbjct: 581 FYQ-------QVSQKAASLQARERE--------LKSYQDQEVQQAIAAAKEEIAKVIRQL 625
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL 797
Q+ +PSA ++ T++ Q KV +P+ +
Sbjct: 626 QRGKPSAQKAQQATEI-------LGQIQAEQKAKV----------------APKPIGYQ- 661
Query: 798 PNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
P VG+ + + SFG+ V +V + + + V +G MK + DI
Sbjct: 662 PTVGERIRIPSFGQTAEVTQVNATAQTVNVTLGLMKMTVPMADI 705
>gi|254412960|ref|ZP_05026732.1| MutS2 family protein [Coleofasciculus chthonoplastes PCC 7420]
gi|196180124|gb|EDX75116.1| MutS2 family protein [Coleofasciculus chthonoplastes PCC 7420]
Length = 820
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 234/819 (28%), Positives = 376/819 (45%), Gaps = 144/819 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A ++ T +SL LL +T +++ +
Sbjct: 5 ETLELLEWQRLCQHLATFAATKLG--AIASRHLHPPATLAESLHLLAQTKEVYQLECQLT 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
G+ + A+ R L + LA+ L LR I + D+ +
Sbjct: 63 SGWTFEGI--QDIGDALERAERQGILSGEDLLAIATTLAGVR----RLRRLIDDQEDIPV 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L Q++ + L + I + +DE G + D ASP L + R + L ++YQ +
Sbjct: 117 ----LNQLVADIRTYPELEQEIHRCIDERGDVTDRASPKLAEIRQHSKSLRDRIYQTLQN 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ + ++ R + A Q S G++ +SS+G IEP + V L ++
Sbjct: 173 IVQRQGGALQQPLITQRGDRFVLPVKAPQKDSVSGIVHDASSTGATLYIEPHAIVGLGNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+ + E V LTE++ ++E++L +LD+ A+A YSL P
Sbjct: 233 LKTYQRREQAEAEAVRRVLTEQVAAVKPDLEQVLAVATRLDLATAKARYSLWLQANPPRF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
P ++RE +I L + HPLL+ Q++ +
Sbjct: 293 IDP------------------NQRE-SITLRQLRHPLLVWQYQHE--------------- 318
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKT 469
E A VPI I I + +V+ ITGPNTGGKT
Sbjct: 319 ------------------------------EDAPVVPITIQIQPQIKVVAITGPNTGGKT 348
Query: 470 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 529
+ LKT+GLA +MAK GL + + E ++PWF+ + ADIGDEQSL QSLSTFSGH+++I I
Sbjct: 349 VTLKTLGLAALMAKVGLFVPAKEPVELPWFEQILADIGDEQSLEQSLSTFSGHIRRISRI 408
Query: 530 ISQ---------------------------STSQSLVLLDEIGAGTNPLEGTALGMSLLE 562
+ + + +LVLLDEIGAGT+P EG+AL ++LL
Sbjct: 409 LEELENCRAPWRVSTDGGEDDLAQREPDTPHPTSALVLLDEIGAGTDPAEGSALAIALLN 468
Query: 563 AFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINI 622
A+ L T+ATTH+GELK LKY ++ FENA +EF++V L PTY++LWG+PGRS+A+ I
Sbjct: 469 YLADHAQL-TVATTHYGELKALKYQDERFENASVEFNDVTLSPTYRLLWGIPGRSNALTI 527
Query: 623 AERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
AERLGL VV A+ L G +S ++N+VI +E + EA L + LH+ +
Sbjct: 528 AERLGLKSDVVSLAQTLVGGSSEDVNQVISGLEAQRRDQETKAQEANQLLQQTERLHQEV 587
Query: 683 LRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+ + E + + Q + DA A A++ + + ++L ++ Q+
Sbjct: 588 SSKAKLLQERERELKLSQEQAVQDAIAQAKAEIAQVIRKL------------QQGPQIAQ 635
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGD 802
+A ++ K + +H+ + + P VGD
Sbjct: 636 NAKKATDALKEIEQRHIPKPPAKAKPAFQ--------------------------PKVGD 669
Query: 803 LVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ + + V+ E+ V+ G MK + DI
Sbjct: 670 RIRIPRLNQTAEVLTPADEDGELTVRFGLMKMTVSLADI 708
>gi|17135027|dbj|BAB77573.1| DNA mismatch repair protein [Nostoc sp. PCC 7120]
Length = 678
Score = 306 bits (785), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 215/665 (32%), Positives = 324/665 (48%), Gaps = 117/665 (17%)
Query: 189 LIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSI 248
L + I + +DE G + D AS L R +++ L ++ Q + +++ ++N ++
Sbjct: 10 LEQEIHRCIDERGQVTDRASTKLGDIRTELRKLRSQITQKLQNILQVKSNAVQEQLITQR 69
Query: 249 HGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLL 306
R I A Q + G++ +S+SG IEP S VP+ ++L+Q EE +
Sbjct: 70 GDRFVIPVKAPQKDAIPGIVHDTSTSGATLYIEPNSVVPMGNQLRQTIRKEQAEEEAIRR 129
Query: 307 ALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTS 366
ALTEK+ ++E++L + LD+ ARA YSL P Q+ +
Sbjct: 130 ALTEKVAAVKPDLERLLAIVTTLDMATARARYSLWLKANPPRFIDRQEQE---------- 179
Query: 367 KVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGE 424
I L + +HPLL+ QQH+Q G+A
Sbjct: 180 ---------IITLRQLHHPLLVWQQQHEQ-----------------------GHAV---- 203
Query: 425 KDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKS 484
+P+D+ I+ RV+ ITGPNTGGKT+ LKT+GLA +MAK
Sbjct: 204 --------------------IPVDLLISPHIRVVTITGPNTGGKTVTLKTLGLAALMAKV 243
Query: 485 GLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ--------STSQ 536
GL + + E ++PWFD V ADIGDEQSL QSLSTFSGH+++I I++ T
Sbjct: 244 GLFVPAREPVEMPWFDQVLADIGDEQSLQQSLSTFSGHIRRISRILNALGTGEQDLETPN 303
Query: 537 SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM 596
SLVLLDE+GAGT+P EG+AL ++LL+ A+ L T+ATTH GELK LKY + FENA +
Sbjct: 304 SLVLLDEVGAGTDPAEGSALAIALLQYLADHAQL-TVATTHFGELKALKYEDQRFENASV 362
Query: 597 EFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMER 656
EFD+ L PTY++LWG+PGRS+A+ IA RLGL VV+ A+ G A+ E+N VI +E
Sbjct: 363 EFDDATLSPTYRLLWGIPGRSNALAIALRLGLKAEVVEQAKTQVGEATDEVNLVIAGLEA 422
Query: 657 FKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVH 716
+ + EA+ L + L+K + + E Q + Q+I+ AI
Sbjct: 423 QRRRQETKAAEAQKILQQAERLYKEVSNKAAALQER--EQSLKASQEIAVQQAI------ 474
Query: 717 KSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPA 776
+QA+ + K ++L+ + + + N H + +Q K +
Sbjct: 475 ----------TQAKGEIAKVIRRLQQGTATAQDAQQATNNLHQIAQKYQPAPPPKAKPGF 524
Query: 777 TASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIM 836
+P VGD + +S FG+ V+ E+ V+ G MK +
Sbjct: 525 --------------------VPKVGDRIRISQFGQTADVLTAPDEDGELTVRFGIMKMTV 564
Query: 837 KFTDI 841
K DI
Sbjct: 565 KLEDI 569
>gi|284929397|ref|YP_003421919.1| MutS2 family protein [cyanobacterium UCYN-A]
gi|284809841|gb|ADB95538.1| MutS2 family protein [cyanobacterium UCYN-A]
Length = 810
Score = 301 bits (772), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 249/819 (30%), Positives = 391/819 (47%), Gaps = 156/819 (19%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L++LEW +LC +++FA T +G T Q I + +S LL +T +++
Sbjct: 5 ETLKLLEWSRLCSHLATFATTKMG--ITAAQNPDIPELLTESQELLSQTEEVYYLEQDPK 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ IR+V + + L L+ LL + TL R ++ +
Sbjct: 63 IKLIFEGI------VDIRDVVKIAAL--GGYLSGKDLLGIAITLDKVRRLRKIVNSYEKL 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ + L ++I VDE+G I + AS L + R ++ L ++YQ +
Sbjct: 115 PLFNLKKLVNNIKTYPELEQTIRYCVDENGDITEHASSKLSKIRLLLRELRNEIYQKLQS 174
Query: 232 LIRNENN---ESLFLEVSSIHGRLCIRTGA---DQLSFKGLLL-SSSSGIGSVIEPLSAV 284
+I + ESL ++ + R I DQ+ G++ +S++G+ IEP V
Sbjct: 175 IINKKAGAIQESL---ITQRNNRFVIPVKTLQKDQIP--GIVHDTSNTGMTVYIEPSYIV 229
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
+ ++ Q T E +L LTEK+ + ++ ++ I +LD+ ARA YSL GG
Sbjct: 230 DIGNKYCQYLRQETIEEIVILRQLTEKIAEVAESLKYLVEAIQKLDLATARARYSLWLGG 289
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
P E TI L K YHPLL+ Q QK +Q
Sbjct: 290 NIPQFI---------------------EEGETIILRKLYHPLLIWQ--QKKEQG------ 320
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
+QV VPIDI I K V+ ITGPN
Sbjct: 321 -----------------------------VQV--------VPIDIQINSKINVVSITGPN 343
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKT+GLA +MAK GL I + K+PWF +V ADIGDEQS++Q+LSTFS H++
Sbjct: 344 TGGKTVTLKTLGLAALMAKVGLFIPAVSPVKLPWFKNVLADIGDEQSITQNLSTFSSHIR 403
Query: 525 QIGNIISQ----------------STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
+I I+ SLVLLDE+GAGT+P EG+AL +SLL A +
Sbjct: 404 RIILILKAVSNSSKSNSSKILNKFKNCSSLVLLDEVGAGTDPTEGSALAISLLSHLA-NH 462
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+LLTIATTH+GE+K LKY + FENA +EF++ P+Y++LWG+PGRS+AI+IA+ LGL
Sbjct: 463 ALLTIATTHYGEIKALKYRDSRFENASVEFNDQTFSPSYRLLWGIPGRSNAISIAQNLGL 522
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKN------L 682
++Q AR + G S ++N++I+ +E + + +EA+ L ++N + +
Sbjct: 523 DLNILQAARNIVGEQSKDVNDIILGLEEQRNKQELKANEAQELLKQAKNFYTEVSDKAVI 582
Query: 683 LRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
L+ R + L+H K Q+ SA + + V + QQ
Sbjct: 583 LKEREQELKHFQ---------------------EKEIQKAISSAKEEIAQVIRHLQQGDK 621
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGD 802
++ ++L TK +L + ++ K E+ + P++ G+
Sbjct: 622 TSQKALQATK-----EILNISKEKLPQVKKEYSSYC-----------PKI--------GE 657
Query: 803 LVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V ++ FG+ V+ V +E+VV+ G M + FTDI
Sbjct: 658 KVKITKFGQNAQVLDVIADSQEVVVRFGLMTMKILFTDI 696
>gi|411117308|ref|ZP_11389795.1| MutS2 family protein [Oscillatoriales cyanobacterium JSC-12]
gi|410713411|gb|EKQ70912.1| MutS2 family protein [Oscillatoriales cyanobacterium JSC-12]
Length = 865
Score = 300 bits (767), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 245/858 (28%), Positives = 382/858 (44%), Gaps = 191/858 (22%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +S+FA T LG A Q I +L LL +T +++ S
Sbjct: 5 ETLELLEWSRLCQHLSTFAATKLG--AIAAQNLKIPTHRDQTLDLLAQTQEVYDLESRPS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ G+D + + L E L++ L + TL+ ++ D Y
Sbjct: 63 GGLNFDGIDD--IGEPLERAGLGGILTGKELLSIATTLAGARTLRRTI--------DNYP 112
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
F L +I L L + I + + G + + AS L R Q++ + ++Y ++
Sbjct: 113 EFTVLNNLIQDLRTYPELEQDIHHCIGDHGDVLERASLKLGNIREQLKQVRDRIYSILHS 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLLSSS-SGIGSVIEPLSAVPLNDE 289
+++ + + ++ GR + A Q + G++ +S SG IEP SAV LN++
Sbjct: 173 ILQRKAHAIQEHVITQRSGRFVLPVKAPQKDAIPGIVHDTSMSGATLYIEPQSAVNLNNQ 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L+Q + EE + L++K+ ++E+++ + LD+ ARA YS G P
Sbjct: 233 LRQLQRQEQVEEEAIRQRLSKKVADVKPDLERLMAIVTTLDLATARARYSDWLGANPPRF 292
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQAWKDLESANT 407
P +S +I L + HPLL+ +QH+Q
Sbjct: 293 -------------PNSSS--------SIVLRQLRHPLLVWQEQHEQ-------------- 317
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
G A VPID+ I + RV+ ITGPNTGG
Sbjct: 318 ---------GKAV------------------------VPIDLVIQPQIRVVAITGPNTGG 344
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT G+A +MAK GL + + E A++PWFD + ADIGDEQSL QSLSTFSGH+++I
Sbjct: 345 KTVTLKTFGIAALMAKVGLFVPAKEPAELPWFDQILADIGDEQSLQQSLSTFSGHIRRIS 404
Query: 528 NII----------------------------------------------SQSTSQSLV-- 539
I+ S + QSL+
Sbjct: 405 RILEALEGQKQEQEPEVRSQEPGDSNQGGYRVLGMDSPQPPIPNPYFPSSATKLQSLIPN 464
Query: 540 ----------LLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589
LLDE+GAGT+P EG+AL ++LL+ A+ LTIATTH GELK LKY +
Sbjct: 465 PQSPVPLSLVLLDEVGAGTDPSEGSALAIALLKYLADHAG-LTIATTHFGELKALKYQDP 523
Query: 590 FFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINE 649
FENA +EFD+V L PTY++LWG+PGRS+A+ IA RLGL +++ A+ G A+ ++N
Sbjct: 524 RFENASVEFDDVSLSPTYRLLWGIPGRSNALAIASRLGLKDTIIEAAKTYVGGATQDVNT 583
Query: 650 VIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAA 709
VI +E + Q EA L + L++ + R + E + + Q + +A A
Sbjct: 584 VIAGLEEQRRQQETRSQEAEKLLKHAERLYQEVSRKAASLQEREKALHLGQEQAVQEAIA 643
Query: 710 IARSLVHKSAQQL------CPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
A+ + + +QL +A QA +++ ++Q PS Q
Sbjct: 644 QAKRDIAQVIRQLQQGPQTAQAAQQATEALNQISEQYLPSRQQ----------------- 686
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
P+ K P VGD + + G+ V+ + + +
Sbjct: 687 -------------------------QPKPKSGFCPQVGDRIRIPRLGQTAEVLSIPDAND 721
Query: 824 EIVVQVGNMKWIMKFTDI 841
EI V+ G MK + D+
Sbjct: 722 EITVRFGLMKMTVSLQDV 739
>gi|257061571|ref|YP_003139459.1| recombination and DNA strand exchange inhibitor protein [Cyanothece
sp. PCC 8802]
gi|256591737|gb|ACV02624.1| MutS2 family protein [Cyanothece sp. PCC 8802]
Length = 830
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 243/830 (29%), Positives = 386/830 (46%), Gaps = 157/830 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG + Q SI ++S +LL +T ++++
Sbjct: 5 ETLELLEWSRLCQHLATFAATKLG--SLSAQKLSIPTNIEESKQLLAQTQEIYRLEQNLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
G++ + ++ + L E L + L LR I+ D I
Sbjct: 63 IKWSFDGIND--IGDSLERAQLGGMLSGQELLNIATTLAGVR----RLRRIIENQEDFPI 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ + + ++I +DE G + D AS L + R ++ + ++ Q +
Sbjct: 117 ----LAELVEDVRTYPEIEQNIYHCIDEAGKVADRASVKLGEIRRHLKDIRDRIVQKLQN 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+I+ + ++ R I A Q G++ SSS+G IEP S V ++
Sbjct: 173 IIQRQGGAIQEPVITQRGDRFVIPVKAPQKDQIPGIIHDSSSTGATLYIEPNSIVEWGNK 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+Q EE +L L+ ++ D+++ +L LD+ A+A YSL G +P
Sbjct: 233 RRQYLRQEQVEEEAILRKLSAEIAEVYDDLDYLLAIATILDLTTAKARYSLWLEGNAPR- 291
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
F+ D EP+T L + HPLL+ Q K
Sbjct: 292 FINFDQT-----EPIT-------------LRQLRHPLLVWQQKH---------------- 317
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV-PIDIFIARKTRVLVITGPNTGGK 468
E PV PI++ + K RV+ ITGPNTGGK
Sbjct: 318 ------------------------------EQGVPVVPINVQVDPKIRVVAITGPNTGGK 347
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI-- 526
T+ LKT+GLA +MAK GL I + E ++PWF+ V ADIGDEQS+ QSLSTFSGH+++I
Sbjct: 348 TVTLKTIGLAALMAKVGLFIPAKEPVEIPWFEQVLADIGDEQSIEQSLSTFSGHIRRIVR 407
Query: 527 ------------------GNIISQSTSQ-----------------SLVLLDEIGAGTNPL 551
GN Q +S+ +LVLLDE+GAGT+P
Sbjct: 408 ITEGLGNQEDQGNRQQATGNSEDQGSSENIPPSPPPPLPPSPPPNTLVLLDEVGAGTDPA 467
Query: 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILW 611
EG+AL ++LL A+ +LLTIATTH+GELK LKY + FENA +EFD+ L PTY++LW
Sbjct: 468 EGSALAIALLNYLADH-ALLTIATTHYGELKALKYQDSRFENASVEFDDQTLSPTYRLLW 526
Query: 612 GVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHF 671
G+PGRS+A+ IA+RLGL +VQ A+ G S EIN+VI +E + + + EA+
Sbjct: 527 GIPGRSNALIIAQRLGLNLEIVQEAKTRIGGFSEEINQVIAGLEAQRREQEQKALEAKQL 586
Query: 672 LMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARS 731
L + + + + + + + Q++ A A A+ + + +QL Q S
Sbjct: 587 LQKTEKFYTEVSEKATSLQQREQELKRYQEQEVQKAIAQAKEEIAQVIRQL-----QQGS 641
Query: 732 LVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPR 791
++AQQ A+++L QH L P T P+
Sbjct: 642 QTAQKAQQ----ATEALDQI----TQHQL--------------PKT------------PK 667
Query: 792 VKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ + P VG+ + +S+ G+ V++++ + + V+ G MK + T+I
Sbjct: 668 KQASYQPKVGERIRLSNLGQTAEVLEIDEEAQALTVRFGLMKMTVALTEI 717
>gi|356521351|ref|XP_003529320.1| PREDICTED: mutS2 protein-like isoform 2 [Glycine max]
Length = 902
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 257/836 (30%), Positives = 412/836 (49%), Gaps = 95/836 (11%)
Query: 33 FCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQD 92
FCS +S+ ++ E+L+ LEW +C +S+F TS+G A L I +T +D
Sbjct: 24 FCSNPNSPESNSLQA----ETLKTLEWGSVCKQLSAFTSTSMGSAAALNARLPIGRTRRD 79
Query: 93 SLRLLDETNAAIEMQKHGSCSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQF 151
S RLLD+T+AA + + LD +GV DL+ + L E V L
Sbjct: 80 SQRLLDQTSAARLVAE----PLDFSGVHDLTEILGV---ATSGHLLTIRELCTVRHTLAA 132
Query: 152 SETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSI-KDSASPA 210
+ L +L+ + ++ R++PL ++ L + I +D SI D AS
Sbjct: 133 ARELFDALKR-VASASNHPQRYLPLLDILQNCNFQVGLERKIEFCIDCKLSIILDRASED 191
Query: 211 LKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSI--------HGRLC--IRTGADQ 260
L+ R + ++ +++D L++ +++ + I R+C IR
Sbjct: 192 LEIIRSE----RKRNIEILDSLLKEVSSQ--IFQAGGIDRPLIVKRRSRMCVGIRASHRY 245
Query: 261 LSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLA-LTEKMQVDLDE 318
L G++L+ SSSG +EP A+ LN+ L+ +S KAEE V+L+ L ++ +
Sbjct: 246 LLPDGVVLNVSSSGATYFMEPKDAIDLNN-LEVRLSSSEKAEESVILSMLASEIANSESD 304
Query: 319 IEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIY 378
I +L+ I+++D+ ARA Y+ G P L R + + V+ + + T+
Sbjct: 305 INHLLDKILKVDLAFARAAYAQWMNGVCPIFSLGNFEGRDSVEDDDDTLVTQEDDDLTVD 364
Query: 379 LPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSA 438
+ HPLLL+ LE+ + L L GNAA G + ++ M
Sbjct: 365 IVGIRHPLLLE----------SSLENISDNL---TLRSGNAAEFGNGNGTMASKYMPQGI 411
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
+ PVP+D I TRV+VI+GPNTGGKT +KT+GLA +M+K+G+H+ + + K+PW
Sbjct: 412 SDF--PVPVDFKIGHGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKNPKLPW 469
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
FD + ADIGD QSL Q+LSTFSGH+ +I I+ +++QSLVL+DEIG GT+P EG AL
Sbjct: 470 FDLILADIGDHQSLEQNLSTFSGHISRICKILEVASTQSLVLIDEIGGGTDPSEGVALSA 529
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
S+L+ + + L + TTH+ +L ++K + F+NA MEF L+PTY+ILWG G S+
Sbjct: 530 SILQYLKDRVN-LAVVTTHYADLSSMKEKDTRFDNAAMEFSLETLQPTYRILWGCTGDSN 588
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A++IA+ +G ++ A++ +E+FK E E R L S
Sbjct: 589 ALSIAQSIGFDRNIIDRAQKW--------------VEKFKP---EQQQERRGMLYQSLQE 631
Query: 679 HKNLLRTRRKILEHCASQR------FRKVQ-KISDAAAIARSLVHKSAQQ----LCPSAS 727
+N L+ + E AS + ++Q + D L+ K QQ L + S
Sbjct: 632 ERNQLKAQ---AEKAASVHAEIMSVYNEIQGEAEDLDQREMELMAKETQQVQHELEHAKS 688
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
Q +++ K +QLR S L N + S ++ K PA + I
Sbjct: 689 QIETVIQKFEKQLRISGRDQL-------NYLIRESESAIASIVKAHTPADSFP-----IN 736
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKK-GTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
++ R T P +G+ VHV G K TV++ I+VQ G +K +K ++I+
Sbjct: 737 EADRALYT--PQIGEQVHVKGLGGKLATVVESPGDDGTIMVQYGKVKVRVKKSNII 790
>gi|356521349|ref|XP_003529319.1| PREDICTED: mutS2 protein-like isoform 1 [Glycine max]
Length = 914
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 257/836 (30%), Positives = 412/836 (49%), Gaps = 95/836 (11%)
Query: 33 FCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQD 92
FCS +S+ ++ E+L+ LEW +C +S+F TS+G A L I +T +D
Sbjct: 24 FCSNPNSPESNSLQA----ETLKTLEWGSVCKQLSAFTSTSMGSAAALNARLPIGRTRRD 79
Query: 93 SLRLLDETNAAIEMQKHGSCSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQF 151
S RLLD+T+AA + + LD +GV DL+ + L E V L
Sbjct: 80 SQRLLDQTSAARLVAE----PLDFSGVHDLTEILGV---ATSGHLLTIRELCTVRHTLAA 132
Query: 152 SETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSI-KDSASPA 210
+ L +L+ + ++ R++PL ++ L + I +D SI D AS
Sbjct: 133 ARELFDALKR-VASASNHPQRYLPLLDILQNCNFQVGLERKIEFCIDCKLSIILDRASED 191
Query: 211 LKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSI--------HGRLC--IRTGADQ 260
L+ R + ++ +++D L++ +++ + I R+C IR
Sbjct: 192 LEIIRSE----RKRNIEILDSLLKEVSSQ--IFQAGGIDRPLIVKRRSRMCVGIRASHRY 245
Query: 261 LSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLA-LTEKMQVDLDE 318
L G++L+ SSSG +EP A+ LN+ L+ +S KAEE V+L+ L ++ +
Sbjct: 246 LLPDGVVLNVSSSGATYFMEPKDAIDLNN-LEVRLSSSEKAEESVILSMLASEIANSESD 304
Query: 319 IEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIY 378
I +L+ I+++D+ ARA Y+ G P L R + + V+ + + T+
Sbjct: 305 INHLLDKILKVDLAFARAAYAQWMNGVCPIFSLGNFEGRDSVEDDDDTLVTQEDDDLTVD 364
Query: 379 LPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSA 438
+ HPLLL+ LE+ + L L GNAA G + ++ M
Sbjct: 365 IVGIRHPLLLE----------SSLENISDNL---TLRSGNAAEFGNGNGTMASKYMPQGI 411
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
+ PVP+D I TRV+VI+GPNTGGKT +KT+GLA +M+K+G+H+ + + K+PW
Sbjct: 412 SDF--PVPVDFKIGHGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKNPKLPW 469
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
FD + ADIGD QSL Q+LSTFSGH+ +I I+ +++QSLVL+DEIG GT+P EG AL
Sbjct: 470 FDLILADIGDHQSLEQNLSTFSGHISRICKILEVASTQSLVLIDEIGGGTDPSEGVALSA 529
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
S+L+ + + L + TTH+ +L ++K + F+NA MEF L+PTY+ILWG G S+
Sbjct: 530 SILQYLKDRVN-LAVVTTHYADLSSMKEKDTRFDNAAMEFSLETLQPTYRILWGCTGDSN 588
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A++IA+ +G ++ A++ +E+FK E E R L S
Sbjct: 589 ALSIAQSIGFDRNIIDRAQKW--------------VEKFKP---EQQQERRGMLYQSLQE 631
Query: 679 HKNLLRTRRKILEHCASQR------FRKVQ-KISDAAAIARSLVHKSAQQ----LCPSAS 727
+N L+ + E AS + ++Q + D L+ K QQ L + S
Sbjct: 632 ERNQLKAQ---AEKAASVHAEIMSVYNEIQGEAEDLDQREMELMAKETQQVQHELEHAKS 688
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
Q +++ K +QLR S L N + S ++ K PA + I
Sbjct: 689 QIETVIQKFEKQLRISGRDQL-------NYLIRESESAIASIVKAHTPADSFP-----IN 736
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKK-GTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
++ R T P +G+ VHV G K TV++ I+VQ G +K +K ++I+
Sbjct: 737 EADRALYT--PQIGEQVHVKGLGGKLATVVESPGDDGTIMVQYGKVKVRVKKSNII 790
>gi|254425115|ref|ZP_05038833.1| MutS2 family protein [Synechococcus sp. PCC 7335]
gi|196192604|gb|EDX87568.1| MutS2 family protein [Synechococcus sp. PCC 7335]
Length = 798
Score = 295 bits (756), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 239/810 (29%), Positives = 391/810 (48%), Gaps = 143/810 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++F T++G A L I+Q ++L L +T A +++ S
Sbjct: 5 ETLTLLEWPRLCRHLATFTATNIGNVAAQRLLIPISQAESEAL--LSQTTEATQLEST-S 61
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
L G+ D+ + A+ R L +E L + L + L+ + A +ED
Sbjct: 62 AGLQFGGIRDIGV---ALERSRLQGILSGDELLDIATTLAGARRLRRQIDA--QED---- 112
Query: 171 IRFMPLTQMIMQ-LFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+P+ Q +++ L L + I + +D+ G + D AS L R Q++++ ++Y +
Sbjct: 113 ---LPVLQALVEDLRTFPELEQEIHRCIDDRGQVADRASTKLGNVRQQLKVIRDRIYSKL 169
Query: 230 DMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLLS-SSSGIGSVIEPLSAVPLN 287
+I+ + ++ + R + A Q + G++ S+SG +EP S V
Sbjct: 170 QRIIQRQGGALQEALITQRNDRFVLPVKAAQKDAVPGIVHDVSTSGSTLYVEPHSIVDNG 229
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
++ + R E + LT ++ ++E ++ I++LD+ ARA Y L G +P
Sbjct: 230 NKRRALRKEEEVESEAIRQMLTYQVAEAFPDLEHLMITIVKLDLAAARARYGLWMEGNAP 289
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESAN 406
F+ Q+ I L + HPLLL QQ K++ +
Sbjct: 290 R-FVNQEQ---------------------ITLRQLTHPLLLWQQEKEQKDKV-------- 319
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
VP D+ + + RV+ ITGPNTG
Sbjct: 320 --------------------------------------VPTDLVMRPELRVVAITGPNTG 341
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MAK G+ I + E ++PWFDSV ADIGDEQS+ QSLSTFSGH+K+I
Sbjct: 342 GKTVTLKTLGLTALMAKVGMFIPAKEPVELPWFDSVLADIGDEQSIEQSLSTFSGHVKRI 401
Query: 527 GNIIS--------QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578
G I+ + SLVLLDE+GAGT+P EG+AL ++LL+ A + + LT+ATTH+
Sbjct: 402 GRILDTIDELKGENEVANSLVLLDEVGAGTDPSEGSALAIALLKHLA-NNTRLTVATTHY 460
Query: 579 GELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
GELK+LKY ++ FENA +EFD+ KL PTY++LWG+PGRS+A++IA RLGL V++ A+
Sbjct: 461 GELKSLKYEDERFENASVEFDDEKLAPTYRLLWGIPGRSNALSIARRLGLKHSVLEQAKA 520
Query: 639 LYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL------LRTRRKILEH 692
G + +N VI +E + + + EA + + +K + LR R
Sbjct: 521 QMGGTNDNVNTVIEGLEAQRQKQEKRAAEAEKLVARAEKFYKEVEARAQSLRDR------ 574
Query: 693 CASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTK 752
Q+ ++ Q+ S + SL+H AR+ V K + L+ +
Sbjct: 575 --EQKLKRQQEKS----VETSLLH------------ARAEVAKVIRDLQKGGLTGQDAQR 616
Query: 753 VGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRV-KRTELPNVGDLVHVSSFGK 811
+ + ++ + +HPA S+ D P+V +R L ++G+ V
Sbjct: 617 ATEE----LNRIEEKRLPTGDHPAKVKSA---DTGYRPKVSERVRLASLGNQV------- 662
Query: 812 KGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
VI+ ++ V+ G MK + +DI
Sbjct: 663 -AEVIEEADDDGKVAVRFGLMKMTVDLSDI 691
>gi|218248506|ref|YP_002373877.1| recombination and DNA strand exchange inhibitor protein [Cyanothece
sp. PCC 8801]
gi|218168984|gb|ACK67721.1| MutS2 family protein [Cyanothece sp. PCC 8801]
Length = 830
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 241/830 (29%), Positives = 384/830 (46%), Gaps = 157/830 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG + Q SI ++S +LL +T ++++
Sbjct: 5 ETLELLEWSRLCQHLATFAATKLG--SLSAQKLSIPTNIEESKQLLAQTQEIYRLEQNLD 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
G++ + ++ + L E L + L LR I+ D I
Sbjct: 63 IKWSFDGIND--IGDSLERAQLGGMLSGQELLNIATTLAGVR----RLRRIIENQEDFPI 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +++ + + ++I +DE G + D AS L + R ++ + ++ Q +
Sbjct: 117 ----LAELVEDVRTYPEIEQNIYHCIDEAGKVADRASVKLGEIRRHLKDIRDRIVQKLQN 172
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+I+ + ++ R I A Q G++ SSS+G IEP S V ++
Sbjct: 173 IIQRQGGAIQEPVITQRGDRFVIPVKAPQKDQIPGIIHDSSSTGATLYIEPNSIVEWGNK 232
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+Q EE +L L+ ++ D+++ +L LD+ A+A YSL G +P
Sbjct: 233 RRQYLRQEQVEEEAILRKLSAEIAEVYDDLDYLLAIATILDLTTAKARYSLWLEGNAPR- 291
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
F+ D +T L + HPLL+ Q K
Sbjct: 292 FINFDQTELIT------------------LRQLRHPLLVWQQKH---------------- 317
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV-PIDIFIARKTRVLVITGPNTGGK 468
E PV PI++ + K RV+ ITGPNTGGK
Sbjct: 318 ------------------------------EQGVPVVPINVQVDPKIRVVAITGPNTGGK 347
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI-- 526
T+ LKT+GLA +MAK GL I + E ++PWF+ V ADIGDEQS+ QSLSTFSGH+++I
Sbjct: 348 TVTLKTIGLAALMAKVGLFIPAKEPVEIPWFEQVLADIGDEQSIEQSLSTFSGHIRRIVR 407
Query: 527 ------------------GNIISQSTSQ-----------------SLVLLDEIGAGTNPL 551
GN Q +S+ +LVLLDE+GAGT+P
Sbjct: 408 ITEGLGNQEDQGNRQQATGNSEDQGSSENIPPSPPPPLPPSPPPNTLVLLDEVGAGTDPA 467
Query: 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILW 611
EG+AL ++LL A+ +LLTIATTH+GELK LKY + FENA +EFD+ L PTY++LW
Sbjct: 468 EGSALAIALLNYLADH-ALLTIATTHYGELKALKYQDSRFENASVEFDDQTLSPTYRLLW 526
Query: 612 GVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHF 671
G+PGRS+A+ IA+RLGL +VQ A+ G S EIN+VI +E + + + EA+
Sbjct: 527 GIPGRSNALIIAQRLGLNLEIVQEAKTRIGGFSEEINQVIAGLEAQRREQEQKALEAKQL 586
Query: 672 LMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARS 731
L + + + + + + + Q++ A A A+ + + +QL Q S
Sbjct: 587 LQKTEKFYTEVSEKATSLQQREQELKRYQEQEVQKAIAQAKEEIAQVIRQL-----QQGS 641
Query: 732 LVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPR 791
++AQQ A+++L QH L P T P+
Sbjct: 642 QTAQKAQQ----ATEALDQI----TQHQL--------------PKT------------PK 667
Query: 792 VKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ + P VG+ + +S+ G+ V++++ + + V+ G MK + T+I
Sbjct: 668 KQASYQPKVGERIRLSNLGQTAEVLEIDEEAQALTVRFGLMKMTVALTEI 717
>gi|443318566|ref|ZP_21047815.1| MutS2 family protein [Leptolyngbya sp. PCC 6406]
gi|442781831|gb|ELR91922.1| MutS2 family protein [Leptolyngbya sp. PCC 6406]
Length = 786
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 206/615 (33%), Positives = 319/615 (51%), Gaps = 87/615 (14%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++F T LG A + + T +S LL +T A +++
Sbjct: 5 ETLALLEWPRLCQHLATFTATKLG--AIAARQLPLPTTQAESEGLLAQTREATQLETR-P 61
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G+ + +S R VR+ L E LA+ + + L+ RA +DA
Sbjct: 62 PGLKFAGIQ-DIGESLERAVRQGL-LGGEELLAIATTVNGARQLR---RAIDGQDA---- 112
Query: 172 RFMPLTQ-MIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+P+ Q ++ L L +SI +D+ + D ASP L R Q++ ++Y +
Sbjct: 113 --VPVLQGLVADLRTYPELEQSIHHCIDDRAQVTDRASPKLGGLRTQIKQCRSEIYAKLQ 170
Query: 231 MLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLND 288
+++ ++ ++ R I A Q + G++ +S+SG +EP S V + +
Sbjct: 171 RILQRQSGAIQEAVITQRGDRFVIPVKAPQKDAIPGIVHDASTSGATLYVEPHSIVEMGN 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
L+Q + EE + ALT ++ ++E++L + LD+ ARA Y L G +P
Sbjct: 231 RLRQLQRQEKTEEEAICRALTAQVAAVATDLERLLAIVTALDLAAARARYGLWLQGNAPQ 290
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
P + + +L H HPLL QH + A E
Sbjct: 291 FITPGE-QTTLRH--------------------LRHPLLWWQHHHE----------AGPE 319
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
+ VPID+ + + RV+ ITGPNTGGK
Sbjct: 320 V-----------------------------------VPIDVVVNPRLRVVAITGPNTGGK 344
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GLA +MAK+G+++ + E ++PWFD V ADIGDEQS+ QSLSTFSGH+K+I
Sbjct: 345 TVTLKTLGLAALMAKAGMYVPAKEPVELPWFDQVLADIGDEQSIEQSLSTFSGHIKRISR 404
Query: 529 IIS--QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
+++ ++ +LVLLDE+GAGT+P EG+AL ++LL A+ + T+ATTH+GELK LKY
Sbjct: 405 VLAALETEGNALVLLDEVGAGTDPSEGSALAIALLRYLADQ-ARFTVATTHYGELKALKY 463
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA- 645
+D FENA +EFDE L PTY++LWG+PGRS+A+ IA RLGL +V A+ G S
Sbjct: 464 QDDRFENASVEFDENTLSPTYRLLWGIPGRSNALTIARRLGLAAEIVDQAQNYVGLGSGQ 523
Query: 646 EINEVIIEMERFKTQ 660
++N+VI +E + Q
Sbjct: 524 DVNQVIAGLEAQRQQ 538
>gi|220908146|ref|YP_002483457.1| recombination and DNA strand exchange inhibitor protein [Cyanothece
sp. PCC 7425]
gi|219864757|gb|ACL45096.1| MutS2 family protein [Cyanothece sp. PCC 7425]
Length = 818
Score = 292 bits (748), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 258/827 (31%), Positives = 388/827 (46%), Gaps = 160/827 (19%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
++L +LEW +LC +++FA T LG L + I + +S L+ +T ++
Sbjct: 7 KTLELLEWPRLCQHLATFACTKLG--TLLARNLPIPTSEAESQMLMQQTQEVYTLENASP 64
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDAD 168
SL G+ DL+ + RA L V L Q + TL + LR I+ D
Sbjct: 65 TSLSFEGIYDLT------HALERAGL---GGLLTAVELSQIASTLAAARNLRRTIERQPD 115
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPAL-KQSRGQVQMLERKLYQ 227
+ L+Q++ L L + I + +D+ G + D AS L Q Q+ ++
Sbjct: 116 CPL----LSQLVTPLRTYPELEQEIHRCIDDAGEVADRASAKLTDIRDRQRQVRQQIQRI 171
Query: 228 LMDMLIRNEN--NESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSA 283
L D+L R N E++ + S R I A Q + G++ SSSSG IEP S
Sbjct: 172 LQDILQRKANALQEAVITQRSD---RFVIPVKAPQKDAIPGIVHDSSSSGATLYIEPQST 228
Query: 284 VPLNDELQQ-ARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
+ LN++L+Q AR T+ E +L L++++ ++E++L + LD+ AR+ YS
Sbjct: 229 INLNNQLRQLARQEQTEVEA-ILRQLSQQVGAVQADLEQLLQIVTHLDLAAARSRYSTWL 287
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQAWK 400
G P+ KV S+++ I L + HPLL+ Q+H+Q
Sbjct: 288 EGNRPHFI----------------KVHSNDK---ITLRQLRHPLLVWQQRHEQG------ 322
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
A VPID+ I +TRV+V+
Sbjct: 323 -----------------------------------------APVVPIDLSIHPQTRVVVM 341
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT LKT+GL +MAK+GL I + E ++PWF+ + ADIGDEQSL QSLSTFS
Sbjct: 342 TGPNTGGKTASLKTLGLTALMAKAGLFIPAREPVELPWFEQILADIGDEQSLQQSLSTFS 401
Query: 521 GHLKQIGNII-----------------------SQSTSQSLVLLDEIGAGTNPLEGTALG 557
GH++ I I+ S S +Q+LVLLDE+GAGT+P EGTAL
Sbjct: 402 GHIRCISQILDALDDPNADPSASLMENGHDHISSDSLAQALVLLDEVGAGTDPTEGTALA 461
Query: 558 MSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRS 617
++LL A+ + LT+ATTH GELK LKY + FENA +EFDE L PTY++LWG+PGRS
Sbjct: 462 IALLHYLADH-TYLTVATTHFGELKALKYQDQRFENASVEFDEASLAPTYRLLWGIPGRS 520
Query: 618 SAINIAERLGLPGIVVQNAR-QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSR 676
+A+ IA RLGL V+ A +L G + ++N+VI +E + Q A L +
Sbjct: 521 NALAIARRLGLNERVLTAAETELGGRKTEDVNQVIAGLEAQRKQQETRSQAAAELLAQTE 580
Query: 677 NLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR 736
LH+ L + ++ + R ++ Q + A A A++ V + +QL +
Sbjct: 581 RLHRELEQKAAQLQAREQTLRQQQEQTVQQAIATAKAEVARIIRQLQQGQTAQ------- 633
Query: 737 AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ--SPRVKR 794
+ +D+V ++ + KQ SP K
Sbjct: 634 ------------------------DAQQASQALDQV------ATEYLPSRKQPTSPPPKP 663
Query: 795 TELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
P +GD V + S G+ VI E+ V+ G MK + T+I
Sbjct: 664 GFRPQLGDRVRIPSLGQTAEVITAPNVDGELTVRFGLMKMNLNLTEI 710
>gi|113476819|ref|YP_722880.1| recombination and DNA strand exchange inhibitor protein
[Trichodesmium erythraeum IMS101]
gi|110167867|gb|ABG52407.1| MutS2 family protein [Trichodesmium erythraeum IMS101]
Length = 857
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 239/851 (28%), Positives = 393/851 (46%), Gaps = 182/851 (21%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++F T LG A SI T +++ LL +T +++
Sbjct: 5 ETLELLEWPRLCQHLATFTGTKLG--AVTASHLSIPLTRTETIHLLAQTQEVYKLETLLV 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L G++ + +++ L E LA+ L L+ RA +++ +
Sbjct: 63 QGLSFDGIED--ISGSLKRSELGGILSGYELLAIATTLAGVRKLR---RAIDSYESEYEL 117
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+P +++ + L + I + +D+ G + D ASP L R ++ L ++ ++
Sbjct: 118 SVLP--ELVADMRTYPELEQEIHRCIDDRGDVTDRASPKLAGIREKIHRLRDRIDNILRG 175
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLNDE 289
+++ + N ++ R I A Q ++ +S GS IEP + V LN++
Sbjct: 176 ILQRKANAIQQPIITQRDDRFVIPVKAPQKDAVPGIVHDTSTTGSTLYIEPNAVVNLNNQ 235
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
++Q + + EE + ALT+K+ ++++++L +D+ ARA YSL T P
Sbjct: 236 MRQLQRQAQREEEAIRQALTQKVAEVKEDLDQLLAITTIIDLATARARYSLWLEATPPQ- 294
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL--QQHKQKTQQAWKDLESANT 407
F D ++ +T + + HPLL+ QQ++QK
Sbjct: 295 FTDLDSEQPMT------------------MGQLRHPLLVWQQQYEQKN------------ 324
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
VPID+ + RV+ ITGPNTGG
Sbjct: 325 -----------------------------------SVVPIDVKVRPPVRVVAITGPNTGG 349
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI- 526
KT+ LKT+GLA +MAK GL I +++ K+PWF+ + ADIGDEQSL QSLSTFSGH+++I
Sbjct: 350 KTVTLKTLGLAALMAKVGLFIPANDPVKLPWFEQILADIGDEQSLEQSLSTFSGHIRRII 409
Query: 527 ----------GNIISQ--------------------------------------STSQSL 538
NIISQ + S +L
Sbjct: 410 RILEAIDVSKANIISQKLKVKTQNSKVIDSDDFSENENNSEIDNLSGNENLESSNLSSTL 469
Query: 539 VLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598
VLLDE+GAGT+P EG+AL +SLL+ A++ +LLT+ATTH GELK LKY ++ FENA +EF
Sbjct: 470 VLLDEVGAGTDPTEGSALAISLLQYLADN-ALLTVATTHFGELKALKYEDERFENASVEF 528
Query: 599 DEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFK 658
D L+PTY++LWG+PGRS+A+ IA RLGL ++ A+ G +S ++N+VI +E +
Sbjct: 529 DSNSLQPTYRLLWGIPGRSNAMTIAGRLGLKQDIIDRAQDYVGDSSEDVNQVIAGLEEQR 588
Query: 659 TQFLEHVHEARHFLMLSRNLHKNLLRT----RRKILEHCASQRFRKVQKISDAAA-IARS 713
+ EA L + +LH+ + R + + E +Q +KI++A A IAR
Sbjct: 589 QKQETKAKEASALLQETESLHQEVARKASALKERERELKLAQEVAVQEKIAEAKAEIAR- 647
Query: 714 LVHKSAQQ---LCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVD 770
V ++ QQ +A +A + +++ +++ PSA+
Sbjct: 648 -VIRNLQQGPLTARNAQKATNAINEISEKYLPSAT------------------------- 681
Query: 771 KVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVG 830
P K +P GD + + G+ V+ +E+ V+ G
Sbjct: 682 ------------------PPPKKPGFMPKEGDRIRIPKIGQIAEVLSAPNENDELTVKFG 723
Query: 831 NMKWIMKFTDI 841
MK + ++
Sbjct: 724 VMKMTVNLREV 734
>gi|119512341|ref|ZP_01631426.1| MutS 2 protein [Nodularia spumigena CCY9414]
gi|119462992|gb|EAW43944.1| MutS 2 protein [Nodularia spumigena CCY9414]
Length = 770
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 228/737 (30%), Positives = 344/737 (46%), Gaps = 152/737 (20%)
Query: 140 NEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDE 199
+E LA+ L + +LR I DL L ++ L L + I + +DE
Sbjct: 42 DELLAIATTLAGTR----NLRRVIDNQEDLPT----LADLVADLRTYPELEQEIHRCIDE 93
Query: 200 DGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGAD 259
G + D AS L + R +++ + ++ Q + +++ ++ ++ R I A
Sbjct: 94 RGQVTDRASLKLGEIRTELRKIRSQITQKLHNILQAKSGAVQEQIITQRGDRYVIPVKAP 153
Query: 260 QL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLD 317
Q + G++ +S+SG +EP S VP ++L+Q EE + +LT+K+
Sbjct: 154 QKDAIPGIVHDTSTSGATLYVEPNSIVPFGNQLRQTIRREQTEEEAIRRSLTQKVAEVKP 213
Query: 318 EIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTI 377
++E++L + LD+ ARA YS G P +D + I
Sbjct: 214 DLERLLAIVTTLDLATARARYSFWLGANPPRFINREDNE-------------------MI 254
Query: 378 YLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVS 437
L + HPLL+ Q + + QA
Sbjct: 255 TLRQLRHPLLVWQQQHEHGQAV-------------------------------------- 276
Query: 438 ALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVP 497
VP+D+ I+ RV+ ITGPNTGGKT+ LKT+ LA +MAK GL + + E ++P
Sbjct: 277 -------VPVDLLISPHLRVVTITGPNTGGKTVSLKTLALAALMAKVGLFVPAREPVEIP 329
Query: 498 WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII--------SQSTSQS------------ 537
WF+ V ADIGDEQSL QSLSTFSGH+++I I+ S++ S S
Sbjct: 330 WFEQVLADIGDEQSLQQSLSTFSGHIRRISRILNALDQEEESENISLSPDSPHSPHTPHT 389
Query: 538 -------LVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590
LVLLDE+GAGT+P+EG+AL ++LL+ A LTIATTH GELK LKY ++
Sbjct: 390 PHTPHSSLVLLDEVGAGTDPVEGSALAIALLQYLANHAQ-LTIATTHFGELKALKYEDER 448
Query: 591 FENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEV 650
FENA +EFDE L PTY++LWG+PGRS+A+ IA RLGL V+ A+ G A+ E+N+V
Sbjct: 449 FENASVEFDESTLSPTYRLLWGIPGRSNALTIARRLGLKPEVITQAKTQVGGATDEVNQV 508
Query: 651 IIEMERFKTQFLEHVHEARHFLMLSRNLHKNL------LRTRRKILEHCASQRFRKVQKI 704
I +E + + EA+ L + L+K + L+ R K L R Q++
Sbjct: 509 IAGLEAQRRRQETKAAEAQSLLQQAERLYKEVSAKSDALQEREKAL--------RADQEV 560
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
+ AIA+ A + V +R Q+ P A + T NQ ++ +
Sbjct: 561 AVQQAIAQ-------------AKGEIAQVIRRLQKGTPKAQDAQQATD-ALNQ--ISQKY 604
Query: 765 QQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEE 824
Q K +P+ K +P VGD V +S FG+ V+ + E
Sbjct: 605 QP--------------------KVAPKPKVGFMPKVGDRVRLSQFGQTADVLTSPDADGE 644
Query: 825 IVVQVGNMKWIMKFTDI 841
V+ G MK +K DI
Sbjct: 645 FSVRFGIMKMTVKLEDI 661
>gi|81299422|ref|YP_399630.1| recombination and DNA strand exchange inhibitor protein
[Synechococcus elongatus PCC 7942]
gi|81168303|gb|ABB56643.1| MutS2 family protein [Synechococcus elongatus PCC 7942]
Length = 796
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 254/804 (31%), Positives = 381/804 (47%), Gaps = 134/804 (16%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
V E+L +LEW LC V+SFA T+L R A + + +Q +S LL +T A ++
Sbjct: 7 VEQEALELLEWPLLCQQVASFAATALARRAARSLPLASSQA--ESEYLLSQTAEAQALEL 64
Query: 109 HGSCSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
L GV D + A+ V R + L E L + + L L+ + AA
Sbjct: 65 TLPQGLPFAGVFD---IGEALARVERQAVLSGEELLQIASTLAAMRQLRRLIDAA----- 116
Query: 168 DLYIRFMPLTQMIM-QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
P Q I+ L L + I +++ G + D AS AL R Q + + ++
Sbjct: 117 ----EAAPTLQAIVADLRTYPELEQQIHFCIEDSGEVADRASDALLGIRQQQRQVRSQIL 172
Query: 227 QLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAV 284
++ L+RN++N L +S R + A Q + G++ SSSSG IEP +
Sbjct: 173 DRLNRLLRNQSNLFQELVISRRSDRYVLPVKAGQKEAVPGIVHDSSSSGSTLYIEPRGVI 232
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN++L+Q + E V L+E + ++E +L LD+ ARA Y L
Sbjct: 233 ELNNQLRQLQRREEVECEAVRRRLSEAIASVSGDLETLLAIATTLDLAVARARYGLHLEA 292
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
P +SSE +I L + HPLLL Q +Q ++
Sbjct: 293 NRPRF------------------TASSE---SICLRQLRHPLLLWQQRQDPDRSV----- 326
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
VP+ + +V+ ITGPN
Sbjct: 327 ----------------------------------------VPVSFQLQPSLKVVAITGPN 346
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LK++GLA +MA++GL + + E +PWF+ + DIGDEQSL QSLSTFSGH++
Sbjct: 347 TGGKTVTLKSLGLAGLMARAGLFVPAREPVDLPWFERILTDIGDEQSLQQSLSTFSGHIR 406
Query: 525 QIGNIISQ--STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
+IG I+ SLVLLDE+GAGT+P EG+AL ++LL A+ +L TIATTH+GELK
Sbjct: 407 RIGRILEALPVAGASLVLLDEVGAGTDPSEGSALAIALLRYLADHATL-TIATTHYGELK 465
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL-PGIVVQNARQLYG 641
LKY +D FENA +EFD+ L PTY++LWG+PGRS+A+ IAERLGL P +V + QL G
Sbjct: 466 ALKYQDDRFENASVEFDDRTLSPTYRLLWGIPGRSNALIIAERLGLSPAVVAEARSQLEG 525
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
+++ VI +E + E A L + LH L ++ E Q R+
Sbjct: 526 GRDRDVDAVIAGLEAQRRDQEEKAAAAAQLLQQTEKLHAELQAKTAELRER--EQSLRQQ 583
Query: 702 QKISDAAAI--ARSLVHKSAQQL--CPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
Q+++ + I AR V K ++L P A++A +RA+Q AS++L
Sbjct: 584 QEVAIQSEIEQARQRVAKVVRRLQQGPKATKA-----ERARQ----ASETLK-------- 626
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
+ Q V V P P +GD + + GK G V+
Sbjct: 627 -----SLSQPAVTVVAPPPGFQ------------------PQLGDRLRIPRLGKVGEVLA 663
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ P ++E+ V+ G +K + + D+
Sbjct: 664 IAPDRQELTVRCGILKLTVSYGDV 687
>gi|56750922|ref|YP_171623.1| recombination and DNA strand exchange inhibitor protein
[Synechococcus elongatus PCC 6301]
gi|56685881|dbj|BAD79103.1| DNA mismatch repair protein MutS [Synechococcus elongatus PCC 6301]
Length = 796
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 253/804 (31%), Positives = 381/804 (47%), Gaps = 134/804 (16%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
V E+L +LEW LC V+SFA T+L R A + + +Q +S LL +T A ++
Sbjct: 7 VEQEALELLEWPLLCQQVASFAATALARRAARSLPLASSQA--ESEYLLSQTAEAQALEL 64
Query: 109 HGSCSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
L GV D + A+ V R + L E L + + L L+ + AA
Sbjct: 65 TLPQGLPFAGVFD---IGEALARVERQAVLSGEELLQIASTLAAMRQLRRLIDAA----- 116
Query: 168 DLYIRFMPLTQMIM-QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
P Q I+ L L + I +++ G + D AS AL R Q + + ++
Sbjct: 117 ----EAAPTLQAIVADLRTYPELEQQIHFCIEDSGEVADRASDALLGIRQQQRQVRSQIL 172
Query: 227 QLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAV 284
++ L+RN++N L +S R + A Q + G++ SSSSG IEP +
Sbjct: 173 DRLNRLLRNQSNLFQELVISRRSDRYVLPVKAGQKEAVPGIVHDSSSSGSTLYIEPRGVI 232
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN++L+Q + E V L+E + ++E +L LD+ ARA Y L
Sbjct: 233 ELNNQLRQLQRREEVECEAVRRRLSEAIASVSGDLETLLAIATTLDLAVARARYGLHLEA 292
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
P +SSE +I L + HPLLL Q +Q ++
Sbjct: 293 NRPRF------------------TASSE---SICLRQLRHPLLLWQQRQDPDRSV----- 326
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
VP+ + +V+ ITGPN
Sbjct: 327 ----------------------------------------VPVSFQLQPSLKVVAITGPN 346
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LK++GLA +MA++GL + + E +PWF+ + DIGDEQSL QSLSTFSGH++
Sbjct: 347 TGGKTVTLKSLGLAGLMARAGLFVPAREPVDLPWFERILTDIGDEQSLQQSLSTFSGHIR 406
Query: 525 QIGNIISQ--STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
+IG I+ SLVLLDE+GAGT+P EG+AL ++LL A+ + LTIATTH+GELK
Sbjct: 407 RIGRILEALPVAGASLVLLDEVGAGTDPSEGSALAIALLRYLADHAT-LTIATTHYGELK 465
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL-PGIVVQNARQLYG 641
LKY +D FENA +EFD+ L PTY++LWG+PGRS+A+ IAERLGL P +V + QL G
Sbjct: 466 ALKYQDDRFENASVEFDDRTLSPTYRLLWGIPGRSNALIIAERLGLSPAVVAEARSQLEG 525
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
+++ VI +E + E A L + LH L ++ E Q R+
Sbjct: 526 GRDRDVDAVIAGLEAQRRDQEEKAAAAAQLLQQTEKLHAELQAKTAELRER--EQGLRQQ 583
Query: 702 QKISDAAAI--ARSLVHKSAQQL--CPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
Q+++ + I AR V K ++L P A++A +RA+Q AS++L
Sbjct: 584 QEVAIQSEIEQARQRVAKVVRRLQQGPKATKA-----ERARQ----ASETLK-------- 626
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
+ Q V V P P +GD + + GK G ++
Sbjct: 627 -----SLSQPAVTVVAPPPGFQ------------------PQLGDRLRIPRLGKVGEILA 663
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ P ++E+ V+ G +K + + D+
Sbjct: 664 IAPDRQELTVRCGILKLTVSYGDV 687
>gi|119483388|ref|ZP_01618802.1| MutS 2 protein [Lyngbya sp. PCC 8106]
gi|119458155|gb|EAW39277.1| MutS 2 protein [Lyngbya sp. PCC 8106]
Length = 879
Score = 281 bits (720), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 242/864 (28%), Positives = 385/864 (44%), Gaps = 181/864 (20%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LCH +++FA T LG A +T+ I QT ++L LL +T A +++ +
Sbjct: 5 ETLELLEWQRLCHHLATFATTKLG--AVVTRNLPIPQTPSETLELLAQTKEAYQLELQLT 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L L G+ + A+ V R L E L + L + L + D +
Sbjct: 63 SGLSLQGI--QDIGDALERVERHGILSGEELLNIATTLAGARQL--------RRQVDAHE 112
Query: 172 RFMP-LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+P L +++ +L L + I + +D+ G + D A+P L R +++ ++YQ++
Sbjct: 113 EEVPVLAELVSELRTYPELEQEIHRCIDDRGDVTDRANPKLTDIRIKLKSTRDRIYQILQ 172
Query: 231 MLIRNENNESLFLEVSSIHGRLCIRTGADQ-LSFKGLLLSSSSGIGSV-IEPLSAVPLND 288
+++ + ++ R I A Q G++ +S+ G++ IEP S + LN+
Sbjct: 173 SILQRKAGAIQEQLITQRGDRFVIPVKAPQKYQVPGIVHDTSAKGGTLYIEPKSTIELNN 232
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
+L+Q + EE V L+E++ ++E++L + +D+ +RA Y L P
Sbjct: 233 QLRQLQRREQLEEEAVRQVLSEQIAEVQPDLERLLVIVTTIDLAVSRARYGLWLEANPPT 292
Query: 349 I------------FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQ 396
LP D ++ PVT L + HPLL+
Sbjct: 293 FTNLKIQAEKVECVLPSDTDQTRFQNPVT-------------LRQLRHPLLV-------- 331
Query: 397 QAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTR 456
W+ ++ E+ T + VPID+ I R
Sbjct: 332 --WQ--------------------QQNEQGTPV---------------VPIDVTIKPSIR 354
Query: 457 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF------------- 503
V+ ITGPNTGGKT+ LKT+G+A +MAK GL I + E ++PWFD V
Sbjct: 355 VVAITGPNTGGKTVTLKTIGMAALMAKVGLFIPAREPVELPWFDLVLADIGDEQSIEQSL 414
Query: 504 -------------------ADIGDEQSLS-----QSLSTFSGHLKQIGNII--------- 530
A+IG LS Q L T ++ + N
Sbjct: 415 STFSGHIRRISRILNAIPSANIGTVNQLSIPVTHQQLGTDDSEVEPVQNQQEEVEIIEEV 474
Query: 531 -------------SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
S SL+LLDEIGAGT+P EG+AL +LL+ A S +++TIATTH
Sbjct: 475 DSLETLKAKIKDPEDQISNSLILLDEIGAGTDPTEGSALATALLQYLANS-AVVTIATTH 533
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
GELK LKY +D FEN+ +EFDE L+PTY++LWG+PGRS+A+ IA+RLGL +++ A
Sbjct: 534 FGELKALKYQDDRFENSSVEFDEKTLQPTYRLLWGIPGRSNALKIAQRLGLKSEILETAA 593
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
G S ++N+VI +E + Q EA L + LH+ L+R + E Q
Sbjct: 594 SYLGGTSQDVNDVIAGLEAQRKQQETKAEEASKLLKETERLHQELIRKTALLKER--EQE 651
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
++ Q+ AI +L+ A + V +R QQ +P A + T+
Sbjct: 652 LKREQE----QAIKETLIQ---------AKGEIAQVIRRLQQGQPKAQDAQKATE----- 693
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
T+DK+ S +Q P K P VGD + + S G+ V+
Sbjct: 694 ----------TLDKIAEQRLPSR------QQKPPEKPKFKPKVGDRIRIPSIGQTAEVMN 737
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+++V+ G MK + +I
Sbjct: 738 EPDENGQLMVRFGIMKMSIGLAEI 761
>gi|148241412|ref|YP_001226569.1| mismatch repair ATPase [Synechococcus sp. RCC307]
gi|147849722|emb|CAK27216.1| Mismatch repair ATPase (MutS family) [Synechococcus sp. RCC307]
Length = 793
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 240/802 (29%), Positives = 367/802 (45%), Gaps = 133/802 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW++L V+ FA + LG A L + + T +++ R ET + +
Sbjct: 6 ETLALLEWERLGEQVAGFAGSCLG--ANLCRPLQLAPTLEEAQRRQTETTELLVLDGLTE 63
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
L GV D S+ ++ + +E LLQ ++TL + R + D D
Sbjct: 64 GGLSFQGVSDHSIT---VQLCSKGGCAGADE------LLQLADTLAAARRLRRQIDDD-- 112
Query: 171 IRFMPLTQMIMQ-LFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
P+T +++ L L + + ++E G + D ASP L R Q+Q ++ +
Sbjct: 113 -ELRPVTTALLEGLRTLPELEQQLRFAIEEGGRVADRASPPLAGLRRQLQSQRQERQSRL 171
Query: 230 DMLIRNENNESLFLEVSSIHGR--LCIRTGADQLSFKGLLL-SSSSGIGSVIEPLSAVPL 286
L+R N+ ++ HGR L ++ GA S +G + SS+SG IEP + V L
Sbjct: 172 QELMRRWANQLQDSVIAQRHGRPVLAVKAGAAG-SLQGQVHDSSASGNTLFIEPQAVVGL 230
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
+ + + A K E VLL L+ + + D + M + + QLD+ ARA Y G
Sbjct: 231 GNRIAELEAQEQKEERRVLLQLSAAVAAEGDSLMAMQDCLAQLDLGLARARYGAWLGAIK 290
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + W L HPLL+ W++ + A
Sbjct: 291 PKL---------------------GTESW--QLKDLRHPLLV----------WQERQEAG 317
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T + VP+ + I RV+ ITGPNTG
Sbjct: 318 TAV-----------------------------------VPVSLQIEPPLRVVAITGPNTG 342
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LK++GLA +MA+SGL + S ++PW ++V ADIGDEQSL Q+LSTFSGH+++I
Sbjct: 343 GKTVTLKSLGLATLMARSGLFLPCSGTPQLPWCEAVLADIGDEQSLQQNLSTFSGHVRRI 402
Query: 527 GNI------ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
I + + +LVLLDE+GAGT+P EG AL +LL A+ L++ATTH GE
Sbjct: 403 ARILEALSRLGAAPVPALVLLDEVGAGTDPSEGAALATALLRHLADQ-VQLSVATTHFGE 461
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK LKY + FENA +EFDEV L+PTY++LWG+PGRS+A+ +A RLGL V+ A QL
Sbjct: 462 LKALKYDDSRFENASVEFDEVSLRPTYRLLWGIPGRSNALAVARRLGLSEAVLGGAEQLM 521
Query: 641 GA-ASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFR 699
++ +N VI +E + + E EA LM + LH+ L
Sbjct: 522 DEQGTSSVNTVISGLEEQRQRQQEAAEEAAALLMRAELLHEEL----------------- 564
Query: 700 KVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHV 759
Q+ ++ ++ QQL S + R V + ++LR + +VG+
Sbjct: 565 -QQRWQQEQQQKQARQGEAQQQLVGSIREGRKEVRQLIRRLRNPKADGEAARQVGQRLRS 623
Query: 760 LTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVE 819
L + + +H R P GD V + S GK V+
Sbjct: 624 LEQEHAPESRPQRQH-------------------RGWSPAAGDRVRLLSLGKAAEVLSCS 664
Query: 820 PSKEEIVVQVGNMKWIMKFTDI 841
+E+ V+ G M+ + T I
Sbjct: 665 DDGQELQVRCGVMRLTVPLTGI 686
>gi|33866463|ref|NP_898022.1| DNA mismatch repair protein MutS family protein [Synechococcus sp.
WH 8102]
gi|33633241|emb|CAE08446.1| putative DNA mismatch repair protein MutS family [Synechococcus sp.
WH 8102]
Length = 812
Score = 278 bits (712), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 237/706 (33%), Positives = 348/706 (49%), Gaps = 112/706 (15%)
Query: 33 FCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQD 92
F T A D + E+L +LEW ++C ++SFA T +GR+A + + +T +
Sbjct: 7 FLPTAA--DPTKGIDQAFQETLELLEWPRVCDHLASFASTRMGRDAARNLV--LPETLEA 62
Query: 93 SLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVA----L 148
S + L ET +EM LD DL+ + R V+ +P+ + VA L
Sbjct: 63 SRQRLAET---VEM-----AVLD----DLTEGGLSFRGVQDLTPVLLRCSKGGVATGEEL 110
Query: 149 LQFSETLQLS--LRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQV-VDEDGSIKD 205
L +ETL + LR I E P ++ V ++ ++ ++E G I D
Sbjct: 111 LAVAETLAAARRLRRQIDEP-----ELRPACSALIDTMVTLPELEQRLKFSIEEGGRIAD 165
Query: 206 SASPALKQSRGQVQML-ERKLYQLMDMLIRNENNESLFLEVSSI---HGR--LCIRTGAD 259
AS L R Q L + + +L D+L R + FL+ S I HGR L ++ GA
Sbjct: 166 RASAPLAWLRQQWHGLRQERRDKLQDLLRRL----APFLQDSVIAQRHGRPVLAVKAGAV 221
Query: 260 QLSFKGLLLSSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEI 319
+ SS+SG +EP S + + + L + E VL+ L+ + D +
Sbjct: 222 AQVPGQVHDSSASGSTVFVEPRSVLTIGNRLTDLEGRIRDEERKVLIELSAVVADDHPVL 281
Query: 320 EKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYL 379
++++ ++QLD+ AR Y GGT+P + + ++ R T+
Sbjct: 282 LQLVSILLQLDLALARGRYGRFLGGTAPRM---------------EASAAAPFRFETLR- 325
Query: 380 PKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSAL 439
HPLL+ QHK+ GG A
Sbjct: 326 ----HPLLVWQHKR---------------------AGGPAV------------------- 341
Query: 440 ELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWF 499
VPI + ++ RV+ ITGPNTGGKT+ LK++GLA +MA++GL + + +PW
Sbjct: 342 -----VPISMEVSVDLRVVAITGPNTGGKTVTLKSIGLASLMARAGLLLPCAGMPTLPWC 396
Query: 500 DSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS---QSTSQSLVLLDEIGAGTNPLEGTAL 556
V ADIGDEQSL QSLSTFSGH+K+IG I+ S +LVLLDE+GAGT+P EGTAL
Sbjct: 397 AQVLADIGDEQSLQQSLSTFSGHIKRIGRILEALQSGPSPALVLLDEVGAGTDPSEGTAL 456
Query: 557 GMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGR 616
SLL+A A+ + LTIATTH GELK LKY++ FENA + F+ L PTY++LWG+PGR
Sbjct: 457 ATSLLKALADR-ARLTIATTHFGELKALKYNDARFENASVAFNAETLSPTYELLWGIPGR 515
Query: 617 SSAINIAERLGLPGIVVQNARQLYG-AASAEINEVIIEMERFKTQFLEHVHEARHFLMLS 675
S+A+ IA RLGL V++ A QL AA E+N VI +E + + +A L +
Sbjct: 516 SNALAIASRLGLDDQVLEEASQLLAPAADGEVNSVIRGLEEQRQRQQAAAEDAAALLART 575
Query: 676 RNLHKNLLRTRRKILEHCASQ----RFRKVQKISDAAAIARSLVHK 717
LH LL+ +K + A + R R + I D RSL+ +
Sbjct: 576 ELLHDELLQRWQKQKQQSAERQEQGRQRLERSIRDGQKEVRSLIRR 621
>gi|318042364|ref|ZP_07974320.1| DNA mismatch repair protein MutS family protein [Synechococcus sp.
CB0101]
Length = 861
Score = 278 bits (711), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 252/819 (30%), Positives = 384/819 (46%), Gaps = 150/819 (18%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
+ E+L +LEW +L V+ FA T+ GR +L + + + + S LL +T + +
Sbjct: 56 IQIEALELLEWRRLGEHVAGFAGTTAGR--SLCRELPLAPSLKASQELLAQTAELLALDG 113
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
L GV + ++ ++ + +E L V L + L+ + +DA+
Sbjct: 114 LTEGGLSFQGV--ADLRRTVQLCAKGGVAGADELLDVATTLATARRLRRQI-----DDAE 166
Query: 169 LYIRFMPLT-QMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
L P+T M+ L L + + +++ G + D AS L Q R Q+ ++
Sbjct: 167 LR----PVTTAMVEGLRTLPELEQRLRFCIEDGGRVADRASSPLAQLRRQIASARQERRD 222
Query: 228 LMDMLIRNENNESLFLEVSSI---HGR--LCIRTG-ADQLSFKGLLL-SSSSGIGSVIEP 280
++ L+R + L+ S I +GR L ++ G A QL GL+ SS+SG IEP
Sbjct: 223 RLNDLLRRY---AALLQDSVIAERNGRPVLAVKAGLAGQLP--GLVHDSSASGSTVFIEP 277
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
+ +PL + L+Q +AE VL L+ + + +E + ++QLD ARA Y
Sbjct: 278 QAVIPLGNRLRQLEGEAREAERAVLQELSALVGDEQAALEHLQQVLLQLDAALARARYGA 337
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
G P L +P+ + L HPLLL Q ++
Sbjct: 338 WLGAVRPE----------LVADPLAP----------LRLEGLRHPLLLWQERR------- 370
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV-PIDIFIARKTRVLV 459
E HPV P+ + + RV+
Sbjct: 371 ---------------------------------------EGTHPVVPVSVRVHEGLRVVA 391
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
ITGPNTGGKT+ LK+VGLA +MA++GL + S ++PW V ADIGDEQSL Q+LSTF
Sbjct: 392 ITGPNTGGKTVTLKSVGLAALMARAGLFLPCSGTPQLPWCAQVLADIGDEQSLQQNLSTF 451
Query: 520 SGHLKQIGNI----------ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 569
SGH+++I I + + SLVLLDE+GAGT+P EGTAL ++LL AE +
Sbjct: 452 SGHVRRIARILEALPPAAADLGAAPGASLVLLDEVGAGTDPTEGTALAIALLRQLAER-A 510
Query: 570 LLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLP 629
LTIATTH GELK LKY++ FENA + FD L PTY + WG+PGRS+A+ IA RLGL
Sbjct: 511 RLTIATTHFGELKALKYNDARFENASVAFDVETLSPTYHLQWGIPGRSNALAIASRLGLD 570
Query: 630 GIVVQNARQLYGA-ASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK 688
G V++ A+QL E+N+VI +E + + E EA L + LH+ LL
Sbjct: 571 GQVLEEAQQLLAPRGEGEVNQVIAGLENQRQKQQEAAEEAAALLARTELLHEELL----- 625
Query: 689 ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL 748
QR+++ QK A L + QQL S + V + ++LR
Sbjct: 626 -------QRWQQ-QKEQSA-----ELQEQRRQQLERSIRDGQKEVRRIIRRLR------- 665
Query: 749 HCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQS--PRVKRTE----LPNVGD 802
+ V T++ +T A + +K ++Q P+ +R + P +GD
Sbjct: 666 ------QGHDVDTTSLGET--------ARRAGQRLKSLEQQHRPQPERRDHKGWRPALGD 711
Query: 803 LVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V V S GK G V+ + E+ V+ G M+ ++ + I
Sbjct: 712 RVRVLSLGKAGEVLALSADGRELTVRCGVMRLNLELSAI 750
>gi|449457723|ref|XP_004146597.1| PREDICTED: mutS2 protein-like [Cucumis sativus]
gi|449531305|ref|XP_004172627.1| PREDICTED: mutS2 protein-like [Cucumis sativus]
Length = 890
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 256/821 (31%), Positives = 391/821 (47%), Gaps = 139/821 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+LRVLEW +C +S F TS+G + +T ++S +LLD+T AA E S
Sbjct: 47 ETLRVLEWSSICKQLSKFTSTSMGFDVAQKADVRFGRTREESQKLLDQTTAA-EAVVSTS 105
Query: 112 CSLDLTGV-DLS-LVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
LD +G+ D+S ++ SAI + L + L TL+ + R +E L
Sbjct: 106 RRLDFSGIEDVSGILNSAI----------SGKLLTIAELCSVRRTLKAA-RELFEELQAL 154
Query: 170 YI------RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSI-KDSASPALKQSRGQVQMLE 222
+ RF+PL +++ L + I +D + SI D AS L+ R LE
Sbjct: 155 AVGNHYSDRFLPLIEILQNCDFLVELERKIEFCIDCNYSIILDRASEDLELIR-----LE 209
Query: 223 RKLYQLMDMLIRN-ENNESLFLEVS---------------SIHGRLCI--RTGADQLSFK 264
+K RN E +SL EVS R+C+ R L
Sbjct: 210 KK---------RNMEELDSLLKEVSFKIYQAGGIDRPLITKRRSRMCVAVRATHKNLVSD 260
Query: 265 GLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEE-DVLLALTEKMQVDLDEIEKM 322
G+LLS SSSG +EP +AV LN+ ++ ++ KAEE +L L+ ++ + I +
Sbjct: 261 GILLSTSSSGATYFMEPKNAVDLNN-MEVRLSNSEKAEEISILSMLSTEISESENHIRCL 319
Query: 323 LNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKA 382
L+ I++LD+ ARA Y G P + +E + S ++ + ++ +
Sbjct: 320 LDKILELDLALARAAYGRWMSGVCPCF-------SAKGYEGLNSSIT--DNTLSVDIDAI 370
Query: 383 YHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELA 442
+PLLL + +K + G S +
Sbjct: 371 QNPLLLSNYLKK--------------------FSG-------------------SVPDFP 391
Query: 443 HPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSV 502
P+ IDI I +TRV+VI+GPNTGGKT LKT+GLA +MAK+G+++ + + K+PWFD V
Sbjct: 392 MPIAIDIKIMHQTRVVVISGPNTGGKTASLKTLGLASLMAKAGMYLPAKNHPKLPWFDLV 451
Query: 503 FADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 562
ADIGD QSL Q+LSTFSGH+ +I I+ S+ +SLVL+DEIG+GT+P EG AL S+L
Sbjct: 452 LADIGDHQSLEQNLSTFSGHISRICKILEVSSDESLVLIDEIGSGTDPSEGVALSTSILR 511
Query: 563 AFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINI 622
+ ++ L I TTH+ +L +K S+ FENA MEF LKPTYKILWG G S+A+ I
Sbjct: 512 -YLKNCVNLAIVTTHYADLSRIKDSDSSFENAAMEFSLETLKPTYKILWGSTGDSNALTI 570
Query: 623 AERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
AE +G ++++ A+Q + E + ER + F K+L
Sbjct: 571 AESIGFDPVIIERAKQWMVNLTPERQD-----ERKGSLF------------------KSL 607
Query: 683 LRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+ R K+ +QR + +D +A+ + + A+ L +L KRAQQ
Sbjct: 608 IGERDKL----EAQRQKVASLHADISALYYE-IQEEAKDLDKRERALMALETKRAQQEAA 662
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQ--TTVDKVEHPATASSSVVKDIKQS-PRVKRTE--L 797
+ + + + TS Q + + K E + + S P V T
Sbjct: 663 AIKSKIETVVQEFEEQLKTSGTDQINSLIKKAESAIASICEAYSPTEHSRPSVANTNSYT 722
Query: 798 PNVGDLVHVSSFGKK-GTVIKVEPSKEEIVVQVGNMKWIMK 837
P +G+ V V+ G K TV++V +E I+VQ G +K +K
Sbjct: 723 PQLGEQVFVTGLGNKLATVVEVSDDEEMILVQYGKIKARVK 763
>gi|365158083|ref|ZP_09354324.1| MutS2 family protein [Bacillus smithii 7_3_47FAA]
gi|363621912|gb|EHL73094.1| MutS2 family protein [Bacillus smithii 7_3_47FAA]
Length = 784
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 236/794 (29%), Positives = 382/794 (48%), Gaps = 124/794 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETN-AAIEMQKHGSC 112
L LE+DK+ + A +SLG E S + + + + +ET+ AA ++ G
Sbjct: 6 LATLEFDKIKQQLEQHASSSLGIEKIDALFPSAD--FSEVVHWQEETDEAATVLRVAGHA 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
LD L ++ ++ + L E + + + +S + A + E+ + +
Sbjct: 64 PLD----GLHNIRPHVKRAKIGGLLNGEELIQIAGTI-YSGRMMKKFIAELVENGE---K 115
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
L++ Q+ V L I + VDE+G I DSAS L++ R Q+++ E ++ + ++ +
Sbjct: 116 LPILSEQTEQIPVLTELEHDIKRAVDENGEILDSASSTLREVRSQIRIHEGRIRERLESM 175
Query: 233 IRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
IR++N + + + V+ + R I + G ++ SSSG IEP S V LN+
Sbjct: 176 IRSKNAQKMLSDAIVTIRNDRYVIPVKQEYRHHYGGIVHDQSSSGQTLFIEPESIVQLNN 235
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
+L+Q + + E +L L+ K+Q + DE+ ++ + LD + A+A + S + P
Sbjct: 236 QLKQLKLKEQEEIEKILRELSAKVQENADELLVIVQVMGDLDFIFAKAKLAKSMKASKPL 295
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
+ RE I + +A HPL
Sbjct: 296 M----------------------NREGYIRIHQARHPL---------------------- 311
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
L + VP DI + + +VITGPNTGGK
Sbjct: 312 ------------------------------LPIEEAVPNDIELGKDYTAIVITGPNTGGK 341
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GL +MA+SGL I + E +++ F SVFADIGDEQS+ QSLSTFS H+ I +
Sbjct: 342 TVTLKTIGLLTLMAQSGLQIPAQEGSEMAVFHSVFADIGDEQSIEQSLSTFSSHMVNIVD 401
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I+ + T +SLVL DE+GAGT+P EG AL +S+L+ E G+ + +ATTH+ ELK Y+
Sbjct: 402 ILKEVTGESLVLFDELGAGTDPQEGAALAISILDEVLEVGARV-VATTHYPELKAYGYNR 460
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
D NA +EF+ L PTY++L GVPGRS+A I+ERLGL +++ ARQ GA + E+
Sbjct: 461 DGVINASVEFNVETLSPTYRLLIGVPGRSNAFEISERLGLNHKIIERARQYTGADTNEVE 520
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+I +ER + + EAR +L + L K+L ++ E +K + S A
Sbjct: 521 NMIASLERSRKLAEKEEQEARDYLKSAEKLLKDLQNQMQEFYE-------KKEEMYSRAE 573
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
A +V K+ ++ R L ++ KN V +
Sbjct: 574 REASKIVEKAKEEAEEIIRHLRKL-------------------RLEKNAEVK----EHEL 610
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVI-KVEPSKEEIVV 827
++ + + A + K Q P+ KR+ GD V V SFG+KGT++ KV+ + E +V
Sbjct: 611 IEARKRLSDAMPEIDKKTPQ-PKAKRSRSFMPGDEVKVLSFGQKGTILEKVDGN--EWLV 667
Query: 828 QVGNMKWIMKFTDI 841
QVG +K + +D+
Sbjct: 668 QVGILKMNVNESDL 681
>gi|89098890|ref|ZP_01171770.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. NRRL B-14911]
gi|89086294|gb|EAR65415.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. NRRL B-14911]
Length = 784
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 226/792 (28%), Positives = 394/792 (49%), Gaps = 120/792 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+VLE++K+ + +SLGR L S + Y++ +RL +ET+ A+++ + +
Sbjct: 6 LKVLEFNKVREQLLEHVSSSLGRSKAEVLLPSAD--YEEVVRLQEETDEAVKVLRI-KGN 62
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ L G+ ++ ++ L P E + + + + S L+ + E+++L I
Sbjct: 63 IPLGGI--FDIRPHVKRSVIGGMLSPQELVQIASTVHASRQLKRFVDDFSNEESELPI-- 118
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
LT+ + ++ V L ++I +DE+G + DSAS AL+ R Q++ E ++ + ++ +I
Sbjct: 119 --LTEYMDRVIVLAELEEAIRMAIDENGEMLDSASDALRSIRTQLRTRESRVRERLESMI 176
Query: 234 RNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDE 289
R+ N + + ++ + R I + G ++ SSSG IEP + V LN+E
Sbjct: 177 RSSNAAKMLSDAIITIRNDRFVIPVKQEYRGHYGGIIHDQSSSGQTLFIEPQAIVQLNNE 236
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
LQ R + E +L+ L+ + E++ ++ + ++D + A+ YS + P +
Sbjct: 237 LQSIRVKEQQEIERILVELSGRAAAYQPELDMIVEVLAEVDFMFAKGRYSRRLKASKPEV 296
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
++ER ++ KA HPL
Sbjct: 297 --------------------NNERRINLF--KARHPL----------------------- 311
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKT 469
L++ V DI + R +VITGPNTGGKT
Sbjct: 312 -----------------------------LQIDEAVANDISLGRDYTTIVITGPNTGGKT 342
Query: 470 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 529
+ LKTVGL +MA++GL I + + ++V F +V+ADIGDEQS+ QSLSTFS H+ I +I
Sbjct: 343 VTLKTVGLCTLMAQAGLQIPALDGSEVSVFGAVYADIGDEQSIEQSLSTFSSHMVNIVDI 402
Query: 530 ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589
++++ +SLVL DE+GAGT+P EG AL +S+L+ + GS + IATTH+ ELK Y+ +
Sbjct: 403 LAKADFESLVLFDELGAGTDPQEGAALAISILDEVYKRGSRV-IATTHYPELKAYGYNRE 461
Query: 590 FFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINE 649
NA +EFD L PTYK+L GVPGRS+A I+ RLGL V+++AR S++I
Sbjct: 462 GVINASVEFDIETLSPTYKLLIGVPGRSNAFEISRRLGLDNSVIESARSHVSEDSSQIEN 521
Query: 650 VIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAA 709
+I +E + Q + + EA L + LHK++ +++++E+ +K + AAA
Sbjct: 522 MIASLEDSRRQAEKELEEAHELLRGADMLHKDM---QKQMMEYYE----QKDEMQEKAAA 574
Query: 710 IARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTV 769
A +V K + ++A ++ + L ++ K+ V + +
Sbjct: 575 KAADIVEK-------AKAEAEEII------------RDLRKMRIEKHAEVK----EHELI 611
Query: 770 DKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQV 829
D + A+ V K K++ + + + GD V V +FG+KG +++ S++E VQ+
Sbjct: 612 DARKKLEDAAPKVSKSKKEARKSDKHDFA-AGDEVKVLTFGQKGHLLE-RASEDEWQVQI 669
Query: 830 GNMKWIMKFTDI 841
G +K +K D+
Sbjct: 670 GILKMKVKERDL 681
>gi|452823864|gb|EME30871.1| DNA mismatch repair protein MutS2 [Galdieria sulphuraria]
Length = 902
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 237/746 (31%), Positives = 359/746 (48%), Gaps = 99/746 (13%)
Query: 46 KSRVVYESLRVLEWDKLCHSVSSFARTSLGR----EATLTQLWSINQTYQDSLRLLDETN 101
+ ++ +E+L+ L+W +C V+ F +T R WS QT Q L ETN
Sbjct: 99 REQLEHETLKALDWFPICEKVADFCQTDRVRLFVANGMKVNHWSKEQTQQ----YLMETN 154
Query: 102 AAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS-LR 160
I + G D V +L+++ + ++ S L P E +V S TL +S +
Sbjct: 155 ECIRFMESGYSPTDWM-VGANLLENIVDRAQKGSLLTPRELYQIV-----STTLAISNWK 208
Query: 161 AAIKEDADLYIRFMPLTQMIMQLFVN-RSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQ 219
+++ + Y PL I++ V+ + L SI + VDE I+D+AS L ++R Q++
Sbjct: 209 QSLQSQSTNY----PLLYRIVENVVSMKDLEDSICRSVDEKEQIRDNASIRLYETRTQIR 264
Query: 220 MLERKLYQLMDMLIRNENNESLFLEV-SSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGS 276
+ +++ L++ ++ ESL + + GR I A + + G++ SSSG
Sbjct: 265 STFVHIRKVLHSLLQ-QHEESLQEPIYTERFGRYVIPVKATRRNRVPGIIQDISSSGSTL 323
Query: 277 VIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARA 336
IEP S L + +QQ R +A E++L L+ K+ + D + + + I QLD + ARA
Sbjct: 324 YIEPNSIRSLTNRMQQLRHIEEEAIEEILFDLSRKVCENADHLLYISHAIFQLDWILARA 383
Query: 337 TYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQ 396
+S G P I S ++ ++ KV + W L HPL
Sbjct: 384 QFSQQINGRFPTIV------ESFSNAALSCKVDA----WK--LRGVRHPL---------- 421
Query: 397 QAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTR 456
LE VPID +
Sbjct: 422 ------------------------------------------LERNSIVPIDFEVRPGVT 439
Query: 457 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY-AKVPWFDSVFADIGDEQSLSQS 515
+ ITGPNTGGKT+ LKT G+ ++M K GL + + +P+F+ +FAD+GD QS++QS
Sbjct: 440 AVCITGPNTGGKTVALKTFGIVILMTKVGLFVPCEQNDVHIPFFEDIFADVGDHQSVTQS 499
Query: 516 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 575
LSTFS H+ +I I+ S +SLVLLDEIG GT+P+EG AL MSLL E L +AT
Sbjct: 500 LSTFSSHILRIQRIVQLSHKRSLVLLDEIGTGTDPVEGCALAMSLLLYLVERVGFL-MAT 558
Query: 576 THHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQN 635
THHGELKTLKY + FENA +E D L+PTY+++WGV GRSSAI IA+RLGL + Q+
Sbjct: 559 THHGELKTLKYKDARFENASVELDTFSLRPTYRLIWGVAGRSSAIAIAQRLGLDNWITQS 618
Query: 636 ARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCAS 695
AR + +++ I ++ER K Q +E + L + L+ +I +
Sbjct: 619 ARSIVENGVDKLSLAIEDIERTKQQVIEMKEQIERKERELECLERQLMEREERIQQLENE 678
Query: 696 QRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL------RPSASQ--S 747
K Q + A AR + K +++ S A SL+ +R Q+L + SAS S
Sbjct: 679 WIETKKQALEQDFANAREQIAKVIKEVQRCGSDA-SLIMERKQELESLMLEQKSASHHDS 737
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVE 773
+ TKV K VL + VE
Sbjct: 738 VSGTKVRKGDWVLVKRLSSEPLQVVE 763
>gi|255556027|ref|XP_002519048.1| DNA mismatch repair protein muts2, putative [Ricinus communis]
gi|223541711|gb|EEF43259.1| DNA mismatch repair protein muts2, putative [Ricinus communis]
Length = 873
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 245/820 (29%), Positives = 395/820 (48%), Gaps = 143/820 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L+ LEW+ LC +S F TS+G A + I ++ Q+S LLD+T AA+ M ++G+
Sbjct: 49 EALKALEWNSLCDRLSPFTSTSMGHSAARSASIPIGESIQESRMLLDQTTAALAMMQYGT 108
Query: 112 CSL----DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
D+TG+ V SA+ + L +E AV L+ ++ ++ +K+
Sbjct: 109 LDFSAIEDITGI----VNSAVS----GNLLTVSELCAVRRTLEAAK----AVLERLKDGG 156
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDG-SIKDSASPALK----QSRGQVQMLE 222
D R PL ++ + L + I +D + I D AS L+ + + ++ L+
Sbjct: 157 DCLERSYPLLEIFRSCNLQIQLEQKIGFCIDCNLLIILDRASEDLELIRYERKKTMENLD 216
Query: 223 RKLYQLMDMLIRNENNESLFLEVSSIHGRLCI--RTGADQLSFKGLLLS-SSSGIGSVIE 279
L + + + + F V+ RLC+ R L G++L S SG +E
Sbjct: 217 NLLKGISTRIFQAGGIDRPF--VTKRRSRLCVGVRATHRYLIPDGVILDVSGSGATYFVE 274
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLAL-TEKMQVDLDEIEKMLNGIIQLDVVNARATY 338
P AV LN+ L+ ++ +AEE +L+L T ++ +I+K+L+GI+++D+ ARA Y
Sbjct: 275 PGDAVELNN-LEVMLSNSERAEEIAILSLLTSEIAESERDIKKLLDGILEVDLAFARAAY 333
Query: 339 SLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSS-SEREWTIYLPKAYHPLLLQQHKQKTQQ 397
+ G P + T E + SS + +I + HPLLL +QK
Sbjct: 334 ARQINGVCP----------TFTSEGYEGEPSSRANYALSIDIEGIQHPLLLGSSQQK--- 380
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
PVPI+I + TRV
Sbjct: 381 ---------------------------------------------FPVPINIKVECGTRV 395
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
+VI+GPNTGGKT +KT+G+A +M+K+GL + + K+PWFD V ADIGD QSL Q+LS
Sbjct: 396 VVISGPNTGGKTASMKTLGIASLMSKAGLFLPARNTPKIPWFDVVLADIGDNQSLEQNLS 455
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFSGH+ +I I+ ++ +SLVL+DEI +GT+P EG AL S+L+ + + L + TTH
Sbjct: 456 TFSGHISRICKILEVTSKESLVLIDEICSGTDPSEGVALSTSILQYLRDRVN-LAVVTTH 514
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ +L LK S+ FENA MEF L+PTY+ILWG G S+A++IA+ +G +++ A
Sbjct: 515 YADLSLLKDSDSQFENAAMEFSLETLQPTYQILWGSTGNSNALSIAKSIGFDSNIIERA- 573
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCA--- 694
E++ + + + R L L+K+L+ R K LE A
Sbjct: 574 -----------------EKWVEKLIPEKQQHRKGL-----LYKSLMDERNK-LEAQAREA 610
Query: 695 ----SQRFRKVQKISDAAAIARS----LVHKSAQQ----LCPSASQARSLVHKRAQQLRP 742
+Q +I D A S L+ K QQ L + SQ ++VH LR
Sbjct: 611 ASVHAQIMELYYEIQDEAGNLDSRIMALMAKETQQVQQELKATKSQIETVVHNFENLLRK 670
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGD 802
++ + + + K++ + S + + +PA ++ S V + P +G+
Sbjct: 671 ASPLQFN-SLIRKSESAIAS------IVEAHYPA-------DNLPASEDVS-SYTPQLGE 715
Query: 803 LVHVSSFGKKGTVIKVEPSKEE-IVVQVGNMKWIMKFTDI 841
VH+ FG K + P K+E I+VQ G ++ +K +DI
Sbjct: 716 QVHLKGFGNKVATVVEAPGKDETILVQYGKIRVRVKKSDI 755
>gi|317968912|ref|ZP_07970302.1| DNA mismatch repair protein MutS family protein [Synechococcus sp.
CB0205]
Length = 811
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 251/820 (30%), Positives = 368/820 (44%), Gaps = 158/820 (19%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +L VSSFA T+ GR + + T Q S+ L ET + +
Sbjct: 12 EALELLEWPRLAQHVSSFASTAAGR--VVAARLPLATTRQQSVDWLAETTELLALDGLIE 69
Query: 112 CSLDLTG---VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
L G +D +L A V LL + TL + R ++ D
Sbjct: 70 GGLSFQGAADLDHTLQLCAKGGVASGD-----------DLLSVATTLAAARR--LRRQID 116
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGS-IKDSASPALKQSRGQVQMLERKLYQ 227
Y P+T +++ ++ ++ EDG + D ASP L R Q+ + +
Sbjct: 117 -YPELRPVTTALVEPLRTLPELEQRLRFCIEDGGRVADRASPPLSGLRRQLASVRMERRD 175
Query: 228 LMDMLIRNENNESLFLEVSSIHGR--LCIRTGADQLSFKGLLL-SSSSGIGSVIEPLSAV 284
++ LIR V+ +GR L ++ GA GL+ SS+SG IEP + +
Sbjct: 176 RLNELIRRYAALLQDTVVAERNGRPVLAVKAGAGS-QLPGLVHDSSASGSTVFIEPQAVI 234
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
PL + ++Q +AE VL L+ + + +E + +IQLD+ ARA YS G
Sbjct: 235 PLGNRIRQLEGEEREAERAVLQELSALVGEEQPALEHLQQVLIQLDLALARARYSAWLGA 294
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
P L +P+ + L HPLLL Q +++
Sbjct: 295 VRPE----------LEADPLAP----------LQLEGLRHPLLLWQERRQ---------- 324
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
GG VP+ I + RV+ ITGPN
Sbjct: 325 -----------GGRTV------------------------VPVTIRVESSLRVVAITGPN 349
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LK+VGLAV+MA++GL + VPW V ADIGDEQSL Q+LSTFSGH++
Sbjct: 350 TGGKTVTLKSVGLAVLMARAGLFVPCKGSPHVPWCQQVLADIGDEQSLQQNLSTFSGHVR 409
Query: 525 QIGNII-----------SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 573
+I I+ +Q+ +Q LVLLDE+GAGT+P EGTAL ++LL+ A+ + LTI
Sbjct: 410 RIARILEALPAAGSDLATQAGAQ-LVLLDEVGAGTDPTEGTALAIALLKQLADR-ARLTI 467
Query: 574 ATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVV 633
ATTH GELK LKY + FENA + FD L PTY + WG+PGRS+A+ IA RLGL G V+
Sbjct: 468 ATTHFGELKALKYDDPRFENASVAFDVESLSPTYHLQWGIPGRSNALAIATRLGLDGAVL 527
Query: 634 QNARQLYGA-ASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEH 692
A+ L E+N+VI +E + + E EA L + LH+ LL ++ E
Sbjct: 528 DAAQALLAPRGEGELNQVIAGLESQRQRQQEAAEEAAALLARTELLHEELLMRWQQQKEQ 587
Query: 693 CA---SQRFRKVQK-ISDAAAIARSLVHK-------SAQQLCPSASQARSLVHKRAQQLR 741
A QR ++++ I D R ++ + + +L SA +A + + QQ R
Sbjct: 588 SAELQEQRREQLERSIRDGQKEVRRIIRRLRHGRGTGSSELGESARRAGQQLKQLEQQHR 647
Query: 742 PSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVG 801
P + H + LP VG
Sbjct: 648 PLPERRDH--------------------------------------------KGWLPKVG 663
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
D V V S GK G V+ + E+ V+ G M+ ++ + I
Sbjct: 664 DRVRVLSLGKAGEVLSLSEDGRELSVRCGVMRLNLELSAI 703
>gi|224079239|ref|XP_002305805.1| predicted protein [Populus trichocarpa]
gi|222848769|gb|EEE86316.1| predicted protein [Populus trichocarpa]
Length = 908
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 242/819 (29%), Positives = 407/819 (49%), Gaps = 108/819 (13%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L++LEW LC+ ++ F TS+G+ T I ++ ++S +LLD+T AA+ + + G
Sbjct: 50 ETLKILEWSSLCNQLTPFTSTSMGQSITRNAKIPIGKSKEESQKLLDQTAAALAVMESGP 109
Query: 112 CSLDLTGVD--LSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAA------I 163
LD +G++ ++ SA+ + L E AV + +LRAA +
Sbjct: 110 --LDFSGIEDITRILDSAVS----GTLLTVGELCAV----------RRTLRAARAVLERL 153
Query: 164 KEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGS-IKDSASPALKQSRGQ----V 218
K+ D R+ PL +++ L K + +D + S I D AS L+ R + +
Sbjct: 154 KDSGDCSERYAPLLEILQNCSFQIELEKKVGFCIDCNLSKILDRASEDLEIIRSERKRNM 213
Query: 219 QMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCI--RTGADQLSFKGLLLS-SSSGIG 275
+ L+R L + + + + V+ RLC+ R L G++L+ SSSG+
Sbjct: 214 ENLDRLLKGISARIFQAGGIDKPL--VTKRRSRLCVGVRASHRYLIPDGVVLNVSSSGVT 271
Query: 276 SVIEPLSAVPLNDELQQARASVTKAEEDVLLAL-TEKMQVDLDEIEKMLNGIIQLDVVNA 334
+EP AV LN+ L+ + KAEE +L+L T ++ +I+ ML+GII++D+ A
Sbjct: 272 YFMEPGEAVELNN-LEVMLSDSEKAEEIAILSLLTSEIAESARDIKYMLDGIIEVDLSFA 330
Query: 335 RATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQK 394
RA Y+ G P I+ + S + +I + HPLL
Sbjct: 331 RAAYAYWMNGVRP-IWTSEGCG--------GISSSGGDYLLSIDIEGIRHPLL------- 374
Query: 395 TQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARK 454
+ + R + G N+ E D + + S PVPI+I +
Sbjct: 375 ---------NGTSRKRLSNILGSNSLNSMEVDEDSMLDTGKPSKNVSEFPVPINIKVECG 425
Query: 455 TRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQ 514
TRV+VI+GPNTGGKT +KT+G+A +M+K+GL++ + K+PWFD V ADIGD QSL Q
Sbjct: 426 TRVVVISGPNTGGKTASMKTLGVASLMSKAGLYLPAKNTPKLPWFDFVLADIGDHQSLEQ 485
Query: 515 SLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIA 574
+LSTFSGH+ +I I+ ++++SLVL+DEI +GT+P EG AL S+L + + L +
Sbjct: 486 NLSTFSGHISRICKILEVASNESLVLVDEICSGTDPSEGVALSTSILHYLRDHVN-LAVV 544
Query: 575 TTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQ 634
TTH+ +L LK + FENA MEF L+PTY+ILWG G S+A++IA+ +G +++
Sbjct: 545 TTHYADLSLLKDKDSRFENAAMEFSLETLQPTYQILWGCTGDSNALSIAKSIGFDSNIIE 604
Query: 635 NARQLYGAASAEINEVIIEMERFKTQFL-EHVHEARHFLML----SRNLHKNLLRTRRKI 689
AR+ + +++ E ++ ++ L + + E R+ L +LH ++
Sbjct: 605 RARKW-------VEKLVPEKQQERSGMLYQSLLEERNRLEAQARKGASLHTEIM------ 651
Query: 690 LEHCASQRFRKVQKIS-DAAAIARSLVHKSAQ----QLCPSASQARSLVHKRAQQLRPSA 744
+ + ++Q S D ++L+ K Q +L + SQ ++V QLR ++
Sbjct: 652 ------ELYHEIQAESEDLDGRVKALMAKETQLVQLELKAANSQIETVVQNVETQLRKAS 705
Query: 745 SQSLHCTKVGKNQHVLTSNFQ-QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDL 803
+ + + K++ + S + + D + T +SS P +G+
Sbjct: 706 PDQFN-SLIKKSESAIASIVEAHCSSDSLPASETDTSSYT--------------PQLGEQ 750
Query: 804 VHVSSFGKK-GTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V V G K TV++ E ++VQ G ++ MK +DI
Sbjct: 751 VLVKRLGNKLATVVEAPRDDETVLVQYGKIRVRMKKSDI 789
>gi|384245629|gb|EIE19122.1| hypothetical protein COCSUDRAFT_38365 [Coccomyxa subellipsoidea
C-169]
Length = 624
Score = 273 bits (697), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 213/629 (33%), Positives = 320/629 (50%), Gaps = 57/629 (9%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
+ LEW +LC V+ FA T+LGR+ L L+LL ET A ++ +
Sbjct: 1 MATLEWPRLCSHVAQFASTTLGRQEAL------------QLQLLAETRAVNVLEAEYAAD 48
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR- 172
LD G+ S+ + I+ R L + AV LL + LQ ++ +A ++ L
Sbjct: 49 LDFGGISTSVAQEGIKRASRGGMLTAAQLAAVAGLLAGAVRLQRAILSAAGQEGRLTEES 108
Query: 173 -FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
P+ + L + ++ + +DE +++ AS ++++RG+ + LE +L L+
Sbjct: 109 ALWPVVSTVKGLPGHAEIVAGVNSALDEGAKVREGASEDVRRTRGRCRTLEGRLRSLLKG 168
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSVIEPLSAVPLNDELQ 291
+ +S L GRLC+ A + +G+LL S++GI +EP +AVPLN+EL
Sbjct: 169 FQGEVSEQSGRL----CCGRLCVAVAAAEKPPRGVLLGSAAGI-IYLEPPAAVPLNNELA 223
Query: 292 QARASVTKAEEDVLLALTEKMQVDLDE-IEKMLNGIIQLDVVNARATYSLSFGGTSPNIF 350
AR AEE VL LT + VD +E + + L ++ LD+ A+A Y G P
Sbjct: 224 AARGEAYAAEEAVLWRLT-GLVVDAEEDVRRALEIVLWLDLTAAKARYGRWINGELPTF- 281
Query: 351 LPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQA------WKDLES 404
+ R+ K + + + T +A L++ + + WK+ +
Sbjct: 282 --AEFARTTKARTSRQKEAQALQRATASPKEADDEFLIRLRRLRHPLLHADYLIWKEAAA 339
Query: 405 ANTELRRRKLYGGNAAR-KGEKDTNLSPSEMQVS--------ALELAH------PVPIDI 449
N R G R KD S M V A E H PVPIDI
Sbjct: 340 RNQPQSSRAASAGPLRRLSNRKDVMARNSGMLVEDEPSEEEAASEEGHEGTPKPPVPIDI 399
Query: 450 FIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDE 509
+ TR ++ITGPNTGGKT LK GLAV+MAK+GL + ++ ++ F V ADIGDE
Sbjct: 400 CMKPDTRCVIITGPNTGGKTATLKAFGLAVLMAKAGLPVPAAAPVRLAPFSGVLADIGDE 459
Query: 510 QSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 569
QSL+ +LSTFSGHL++I + ++ +SLVLLDE+G GT+P EG ALG++LL A A G+
Sbjct: 460 QSLAANLSTFSGHLRRIQALRREADGRSLVLLDEVGTGTDPAEGAALGIALLRALAAGGA 519
Query: 570 LLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLP 629
T FENA +EFDE L PTY+++WG+PGRS+A+NIA RLGL
Sbjct: 520 RGAAITDGR------------FENASVEFDEAALAPTYRLMWGIPGRSNALNIASRLGLN 567
Query: 630 GIVVQNARQLYGAASAEINEVIIEMERFK 658
++ +AR G A AE+++ I E+E +
Sbjct: 568 ADIIADARDRMGTAQAEVDDAIAELEGLR 596
>gi|358346679|ref|XP_003637393.1| MutS2 family protein [Medicago truncatula]
gi|355503328|gb|AES84531.1| MutS2 family protein [Medicago truncatula]
Length = 913
Score = 271 bits (694), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 249/817 (30%), Positives = 400/817 (48%), Gaps = 100/817 (12%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
+SL+ LEW+ +C +S+F TS+G A + T S +LLD+T+AA + +
Sbjct: 37 DSLKTLEWNSICKQLSAFTSTSMGSSAANNARLPVGLTPHHSQKLLDQTSAARLVPQQ-- 94
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR--AAIKEDAD 168
LD +G+ DL+ + S L E V L + L +LR A++ +
Sbjct: 95 -QLDFSGIHDLTDILSV---SVSGKLLTVPELCTVRRTLSSARELFDTLRHLASVSNHSH 150
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDG-SIKDSASPALKQSRGQ----VQMLER 223
R+ PL +++ L + I +D + I D AS L+ R + +++L+
Sbjct: 151 ---RYSPLLEILQNCNFLMGLERRIEFCIDCNLLVILDRASEDLEIIRSERKRNIEILDS 207
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIHGRLC--IRTGADQLSFKGLLL-SSSSGIGSVIEP 280
L ++ + R + F ++ R+C IR L +G++L +SSSG +EP
Sbjct: 208 LLKEVSSQIFRAGGIDRPF--ITKRRSRMCVGIRASYRYLLPEGIVLNASSSGATYFMEP 265
Query: 281 LSAVPLNDELQQARASVTKAEED--VLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATY 338
A+ LN+ + R S ++A E+ +L L ++ EI +L+ I+++D+ ARA Y
Sbjct: 266 KEAIDLNN--MEVRLSNSEAAEERAILSMLASEIANSKSEINYLLDKILEVDLAFARAAY 323
Query: 339 SLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQA 398
+ G P IF ++ + E + + T+ + HPLLL+ +
Sbjct: 324 AQWMNGVCP-IFSLGTLEVCESVEKDNDISVVQDDDLTVNIEGMRHPLLLESSLENI--- 379
Query: 399 WKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVL 458
S N LR GNAA G + ++ + PVP+D I TRV+
Sbjct: 380 -----SDNVTLR-----SGNAAELGNGNGTMASKSASQGITDF--PVPVDFKIRSGTRVV 427
Query: 459 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 518
VI+GPNTGGKT +KT+GLA +M+K+G+H+ + + K+PWFD + DIGD QSL Q+LST
Sbjct: 428 VISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKSPKLPWFDLILVDIGDHQSLEQNLST 487
Query: 519 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578
FSGH+ +I + ++ QSLVL+DEIG+GT+P EG AL S+L+ E + L + TTH+
Sbjct: 488 FSGHISRIRKFLEVASKQSLVLIDEIGSGTDPSEGVALSASILQYLREHVN-LAVVTTHY 546
Query: 579 GELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
+L T+K + FENA MEF L+PTY++LWG G S+A++IA+ +G ++ +A++
Sbjct: 547 ADLSTMKEKDTCFENAAMEFSLETLQPTYRVLWGCTGDSNALSIAQSIGFDKNIIDHAQK 606
Query: 639 LYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRF 698
+E+ K E E R L S KN L+ + + ++
Sbjct: 607 W--------------VEKLKP---EQQQERRGMLYQSLQEEKNRLKAQAEKAASIHAEIM 649
Query: 699 RKVQKI-SDAAAIARS---LVHKSAQQ----LCPSASQARSLVHKRAQQLRPSASQSLHC 750
+I +A + R L+ K AQQ L + SQ ++ K +QL+
Sbjct: 650 NVYSEIQGEAEDLDRRETMLMAKEAQQVQQELEDAKSQMEIVIQKFEKQLK--------- 700
Query: 751 TKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRV-------KRTE--LPNVG 801
+G+NQ L S +++ TA +S+VK +P V RT P G
Sbjct: 701 -DLGRNQ--LNSIIKES--------ETAIASIVK--AHTPAVGFPINDADRTTSYTPQFG 747
Query: 802 DLVHVSSFGKK-GTVIKVEPSKEEIVVQVGNMKWIMK 837
+ V V G K TV+++ E I+VQ G +K +K
Sbjct: 748 EQVRVKGLGGKLATVVELLGDDETILVQYGKVKVRVK 784
>gi|33239697|ref|NP_874639.1| mismatch repair ATPase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33237222|gb|AAP99291.1| Mismatch repair ATPase (MutS family) [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 805
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 236/808 (29%), Positives = 386/808 (47%), Gaps = 152/808 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETN--AAIEMQKH 109
E+L +LEW +LC ++SFA TS G++ T SI + + R L ET +I+ +
Sbjct: 19 ETLDLLEWPRLCEQLASFASTSQGQKKCKT--CSIPDDIKTTRRYLSETIEIGSIDEEIE 76
Query: 110 GSCS-LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKED 166
G S L + +D L++S+ L+ + LL +ETL+ + LR I
Sbjct: 77 GGISFLGVNYLDQILLRSS-----------KGGVLSGLELLSVAETLKAARRLRRQI--- 122
Query: 167 ADLYIRFMPLTQ-MIMQLFVNRSLIKSIMQVVD----EDGSIKDSASPALKQSRGQVQML 221
+ PL++ +I L + + + + ++++ E G + D AS L + R QV +L
Sbjct: 123 ------YDPLSRPIISSLLSDLATLPELQRLIEFGLEEGGRVADRASEKLSELRRQVYIL 176
Query: 222 ERKLYQLMDMLIRNENNESLFLEVSSIHGR-----LCIRTGA-DQLSFKGLLLSSSSGIG 275
+ L+ LIR N+ FL+ + I R L +++GA DQL + +S+SG
Sbjct: 177 RIERRDLLKDLIRKCNS---FLQDTVIAERYNRPVLALKSGAIDQL-LGTIHDNSASGNT 232
Query: 276 SVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNAR 335
+EP + +PL + +++ A + E+ +L +E++ + +E + +++L+ AR
Sbjct: 233 VFLEPKAVIPLGNRIEEFEAKILVEEQRLLAYWSEEVGTNFQVLESLSQILLRLEFALAR 292
Query: 336 ATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQK 394
A YS GG +P I E + + + HPLL+ Q+H ++
Sbjct: 293 ARYSNWLGGVAPQI--------------------RDEEDAPFIIQEFRHPLLIWQEHYEQ 332
Query: 395 TQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARK 454
G+ +PI ++
Sbjct: 333 ----------------------GDVV------------------------IPISFEVSSD 346
Query: 455 TRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQ 514
RV+ ITGPNTGGKT+ LK++GLA++M K GL + +PW + V ADIGDEQSL Q
Sbjct: 347 LRVVAITGPNTGGKTVTLKSIGLAILMTKLGLFLPCVGEPSLPWCNQVLADIGDEQSLQQ 406
Query: 515 SLSTFSGHLKQIGNI---ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLL 571
+LSTFSGH+ +I I I+ + S++LLDE+GAGT+P EGTAL ++LL+ FA+ L
Sbjct: 407 NLSTFSGHVVRIIRILDAIAIRSGPSIILLDELGAGTDPTEGTALAIALLKTFADRAR-L 465
Query: 572 TIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGI 631
TIATTH GELK LKY + FENA + FD ++PTY + WG+PG+S+A+ IA RLGL +
Sbjct: 466 TIATTHFGELKALKYHDSRFENASVGFDSETIRPTYHLQWGIPGKSNALAIARRLGLDHL 525
Query: 632 VVQNARQLYGAASAE-INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKIL 690
V A+ L G+ + +N+VI +E + + + EA L + LH L+
Sbjct: 526 VANRAQDLIGSNGVDNVNQVIQGLEEQRQRQQDAAEEAAALLARTEMLHDELM------- 578
Query: 691 EHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHC 750
S+ ++ Q+ D + ++L S + + V + ++LR ++
Sbjct: 579 ----SRWHKQCQQSED-------FQERGRKELEISIREGQVEVRELIRRLRDRSADGEIA 627
Query: 751 TKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFG 810
K G+ + + +Q ++S + +R P GD V + S G
Sbjct: 628 RKTGQRLRRIENIHRQ--------------------QKSFKNERAWSPKAGDRVRLISIG 667
Query: 811 KKGTVIKVEPSKEEIVVQVGNMKWIMKF 838
K G VI V ++ V G + I+
Sbjct: 668 KAGEVISVSADGRQLTVMCGLFRSIVDL 695
>gi|226311231|ref|YP_002771125.1| DNA mismatch repair protein [Brevibacillus brevis NBRC 100599]
gi|254766594|sp|C0Z9F1.1|MUTS2_BREBN RecName: Full=MutS2 protein
gi|226094179|dbj|BAH42621.1| DNA mismatch repair protein [Brevibacillus brevis NBRC 100599]
Length = 785
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 243/804 (30%), Positives = 387/804 (48%), Gaps = 144/804 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + A + G+E ++L LRL DE A + + +
Sbjct: 6 LKTLEYDKIVALLIDKASCTYGKEKA-SELIPF-------LRL-DEVINAQQGTEQAATV 56
Query: 114 LDLTGVDLSLVKSAIREVRRASPL---RPNEALAVVALLQFSETLQLSLRAA-----IKE 165
L L G S+ IR++R P+ R N LA + LL + T+ R + +
Sbjct: 57 LRLKG---SVPLGGIRDIR--GPVQRARLNAMLAPMELLDIASTVMAGRRLKTFLLDMCD 111
Query: 166 DADLYIRFMPLTQMIMQLFVN-RSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
D +L PL Q + R L I + VDE+G I DSAS L+Q R +++ LE +
Sbjct: 112 DHEL-----PLLQQQAERIEGLRELETEIRRCVDENGDILDSASLELRQVRQEIRQLESR 166
Query: 225 LYQLMDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEP 280
+ + +D + R+ + + +E + +I G R I + S G ++ S+SG IEP
Sbjct: 167 IREKLDQMTRSSTYQKMLMENIVTIRGDRFVIPVKQEYRSVFGGIVHDQSASGATLFIEP 226
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
V +N++L++ R + E +L LTE++ ++ + + + +LD + A+A +
Sbjct: 227 EVIVEMNNKLRELRLREEREVERILYVLTEQVSFAVEALVENTEALTELDFMFAKAQLAW 286
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
S P I ++R + + + KA HPL+
Sbjct: 287 SMKAICPRI---------------------NDRGY-VNMRKARHPLI------------- 311
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
P E+ V P+D+ + + + +V+
Sbjct: 312 ------------------------------PREVVV---------PVDVELGGEYQAIVV 332
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT+ LKT+GL +M +GLHI + E +++ F S+FADIGDEQS+ QSLSTFS
Sbjct: 333 TGPNTGGKTVSLKTIGLLSLMTMAGLHIPAEEESEMTVFSSIFADIGDEQSIEQSLSTFS 392
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H+ I I+++ +SLVL DE+GAGT+P EG AL MS+++ +SG+ L +ATTH+ E
Sbjct: 393 SHMTNIIQILAKMDDKSLVLFDELGAGTDPTEGAALAMSIIDHVIDSGARL-VATTHYSE 451
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK Y NA +EFD L+PTY++L GVPGRS+A IA RLGLP ++ AR
Sbjct: 452 LKAYAYDRPEVINASVEFDVQTLRPTYRLLIGVPGRSNAFAIARRLGLPEHIIDVAR--- 508
Query: 641 GAASAEINEV---IIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
G+ S E N+V I +ER + A+ + L L R + A ++
Sbjct: 509 GSISEEDNQVESMIASLERNRKSAEADRLAAKAARQEAEELRTQLEEERAQF----AEEK 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
+++++ D A IA L + A+ + R L A+ + + + K
Sbjct: 565 NKRMERAEDEARIAVQLAKEEAETII------RELREMMAEGMEIKEHRLIDAKK----- 613
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L + + +KV+ PA A V+ T++ VGD V V+SFG+KGTV++
Sbjct: 614 -RLGNAVLELEKEKVKKPAKA-------------VRATQI-KVGDEVMVTSFGQKGTVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G MK +K D+
Sbjct: 659 -KVNNEEFLVQIGIMKMKVKRDDM 681
>gi|427712156|ref|YP_007060780.1| MutS2 family protein [Synechococcus sp. PCC 6312]
gi|427376285|gb|AFY60237.1| MutS2 family protein [Synechococcus sp. PCC 6312]
Length = 817
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 215/670 (32%), Positives = 312/670 (46%), Gaps = 107/670 (15%)
Query: 56 VLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLD 115
+L+W +LC +++F T +G E L Q W +DS +LL +T A ++ + LD
Sbjct: 33 LLDWPRLCQHLATFTATKVGAE--LAQAWQPAPNLRDSQQLLAQTEDAYKLTTYYLRELD 90
Query: 116 LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMP 175
+ + ++S + L P E L + S L + D Y
Sbjct: 91 FS--QIKNIQSGLNRAAHQGVLTPEELLGIAQTQAGSRNL--------RRVVDSYPDLSA 140
Query: 176 LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLE------------R 223
L ++ L L + I + + E G + + ASP L R Q + R
Sbjct: 141 LQALLAALRTFPQLEQEIHRCITEQGEVSERASPQLAAIRQHQQQMRGQIHQQLQQIIQR 200
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSVIEPLSA 283
K L D +I + E L V + R I +S G L IEP +
Sbjct: 201 KHSSLQDTVI-TQRAERYVLPVKAPQ-RDAIPGIVHDVSVTGATL--------YIEPQAI 250
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+ L+Q + E + L++++ + E+++ L I QLD+ ARA Y L
Sbjct: 251 VELNNRLRQLARQGGQEEYRIREVLSQQVTEVVLELQQGLELITQLDLAVARARYGLWLN 310
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
P F+ D EP I+L HPLL+ QH Q+
Sbjct: 311 ANIPR-FVELD-------EP-------------IHLRNLRHPLLIWQHHQEQ-------- 341
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
P+ VPI + IA T+V+ ITGP
Sbjct: 342 --------------------------GPTV-----------VPITVDIAPPTKVVTITGP 364
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT LKT+GL +MAK+GL I ++E ++PWF V ADIGDEQSL +LSTFSGH+
Sbjct: 365 NTGGKTATLKTLGLVALMAKAGLMIPAAEPVELPWFRQVLADIGDEQSLQHNLSTFSGHI 424
Query: 524 KQIGNIISQSTSQ------SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
+ I I+ T++ +LVLLDE+GAGT+P EGTAL ++LL A+ +TIATTH
Sbjct: 425 RTISEILEALTTEANPDNAALVLLDEVGAGTDPSEGTALAIALLTHLADQAQ-ITIATTH 483
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+GELK LKY + FENA +EFD L PTY++LWG+PGRS+A+ IA+RLGL V+ A
Sbjct: 484 YGELKALKYQDPRFENASVEFDSETLAPTYRLLWGIPGRSNALAIAQRLGLNPDVIAAAA 543
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
Q A ++N+VI +E + A L + LH+ LL ++ + R
Sbjct: 544 QALPADQDQVNQVIAGLEAQRRHQEAKASTASQLLSATEKLHQELLTKTEQLRQRELHLR 603
Query: 698 FRKVQKISDA 707
+ Q ++ A
Sbjct: 604 QHQAQAVNTA 613
>gi|414160430|ref|ZP_11416698.1| MutS2 protein [Staphylococcus simulans ACS-120-V-Sch1]
gi|410878328|gb|EKS26213.1| MutS2 protein [Staphylococcus simulans ACS-120-V-Sch1]
Length = 782
Score = 269 bits (687), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 228/799 (28%), Positives = 384/799 (48%), Gaps = 130/799 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM-QKHG 110
++L VL++DK+ V A + LGRE + S YQ + +DET+ ++ KH
Sbjct: 4 KTLDVLDFDKIKALVEKEAVSDLGREKAAS--MSPASDYQTVVHQIDETDEISQIYNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G LS V I + S L E + L+Q + ++E+
Sbjct: 62 LPSL--SG--LSKVSPLIHRAKIGSMLNVRELNQIKRLIQVQNQYKTFYSQLLEEEE--A 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I + L + + QL + L + I Q D + D AS L+ R ++ +++ Q +D
Sbjct: 116 INYPILDERMTQLPILSDLYQEIKQKCDA-YDLFDDASYELQSIRSRIHSTSQRIKQNLD 174
Query: 231 MLIRNENNESLF--LEVSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
++++++N+ L ++ + R I A+ + F G++ SSSG IEP + V +
Sbjct: 175 RVVKSQSNQKKLSDLIITVRNDRHVIPVKAEYRQDFNGIVHDQSSSGQTLYIEPSAVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT ++ + D + + Q+D + A+A Y S GT
Sbjct: 235 NNKISRLRNDEKAEVERILTELTLEVAGEADACLIAESVMGQIDFLTAKARYGSSIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + ER+ +YLPKA+HPLL
Sbjct: 295 PEF--------------------TEERK--VYLPKAFHPLL------------------- 313
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
P + + +E + + ++ITGPNTG
Sbjct: 314 -----------------------DPKTVVANTIEFVDGI----------QTVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +K+ FD+V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSKLGVFDNVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + S++L DE+GAGT+P EG AL MS+L+ + G+L+ +ATTH+ ELK Y
Sbjct: 401 VEILKHADHNSVILFDELGAGTDPSEGAALAMSILDNVQKRGALV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A I+ +LGL G ++++A+ + G E
Sbjct: 460 NREGVMNASVEFDVNTLSPTYKLLMGVPGRSNAFEISSKLGLNGKIIRDAKAMIGQDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQ---- 702
IN +I +E+ + E L +++LH+ L SQ++ + Q
Sbjct: 520 INNMIASLEKNTKRVDNQRIELEQLLREAQDLHRQL------------SQKYDQYQNYEK 567
Query: 703 KISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTS 762
++ D A K+ Q++ + +A ++ +QLR + + ++ + + L
Sbjct: 568 QLMDEAKT------KANQRVKVATKEAEEIISD-LRQLRDEKNADVKEHELIEKRKHLDE 620
Query: 763 NFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSK 822
++ T D+KQ+ + K+ + GD V V ++G+KG V+++
Sbjct: 621 QYEAT-----------------DLKQNVKKKKWDEIKAGDEVKVLTYGQKGEVLEI-LDD 662
Query: 823 EEIVVQVGNMKWIMKFTDI 841
EE VVQ+G +K + D+
Sbjct: 663 EEAVVQMGIIKMKLPIADL 681
>gi|406669612|ref|ZP_11076880.1| MutS2 family protein [Facklamia ignava CCUG 37419]
gi|405582954|gb|EKB56928.1| MutS2 family protein [Facklamia ignava CCUG 37419]
Length = 786
Score = 268 bits (685), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 226/784 (28%), Positives = 383/784 (48%), Gaps = 118/784 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSL-RLLDETNAAIEMQKHGSC 112
L+ L++ K+ + +T +G + QL QT Q+++ RLLDET + + S
Sbjct: 7 LKTLDYHKIKQQLIERVQTEMGHQFVSDQL---PQTKQETIQRLLDETEEVVRIL---SL 60
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
L +S V+ +I+ V + L E + LL + L + + ++E+ + +
Sbjct: 61 PATLPIPRISNVRESIKRVEIGARLNGKELAELGKLLSTTSQL-VRFFSQLEENNQFFPQ 119
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
Q I+ L + + I Q VD DG I D+AS L + R E+ + + ++ +
Sbjct: 120 LNEWVQKIVSL---PEIEQRIDQTVDSDGIILDTASSELNRIRRAQLRTEQSIRETLNTI 176
Query: 233 IRNENNESLFLEVSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDEL 290
I+++ N ++ + R I D + FKG + SS+G IEP S LN++L
Sbjct: 177 IKSKANLLSDTLITIRNQRYVIPVKTDYRAQFKGTVYDQSSTGQTLFIEPQSVTNLNNQL 236
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIF 350
R+ + +L +TE++ L EI + + LD V ARA YSL+ GT P +
Sbjct: 237 AALRSEEKVEVDRILDEVTEQLLPYLSEINQNHYALGYLDYVQARAEYSLAIEGTKPTL- 295
Query: 351 LPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELR 410
S ERE I+ +A HPL
Sbjct: 296 -------------------SPEREVRIW--QARHPL------------------------ 310
Query: 411 RRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTI 470
+ P ++ V DI I + L+ITGPNTGGKTI
Sbjct: 311 ------------------IDPKQI----------VANDILIGGDYQSLIITGPNTGGKTI 342
Query: 471 CLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 530
LKT+G+ +M +SGL+I + E +++ FD V+ADIGDEQS+ Q+LSTFS H+ I +II
Sbjct: 343 LLKTLGMLQIMGQSGLYIPAEEASQIGIFDQVYADIGDEQSIEQNLSTFSSHMTNIVSII 402
Query: 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590
++T QSL+LLDE+G+GT+P EG AL M++L+ F GS++ +ATTH+ ELK
Sbjct: 403 QRATYQSLILLDELGSGTDPQEGAALAMAILDYFQSVGSIV-LATTHYPELKVYANHAAN 461
Query: 591 FENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEV 650
+NA MEF++ L PTY++L G+PGRS+A+ I++RLGL +++ A+ S ++N++
Sbjct: 462 TQNASMEFNDQTLSPTYRLLIGIPGRSNALEISKRLGLRSDIIEKAQSGVQQESQQLNDM 521
Query: 651 IIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAI 710
++++++ + + E + + +L ++ L L+ + + + D A
Sbjct: 522 VMQLDQERREMEEEHQQTQRYLDDAQTL-----------LDRLKDEYQQWLNAKEDLMAQ 570
Query: 711 ARSLVHKSAQQLCPSASQARSLVHK-RAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTV 769
A+ ++ Q + +A ++ R QL S+ Q + +H N ++
Sbjct: 571 AK---REANQYIEAKKEEAEKIISDIRDLQLEQSSQQPI-------KEHTFIEN-KKRLG 619
Query: 770 DKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQV 829
D E + V++ K+ R++ VGD V V ++ ++GT++++ PS +E +VQ+
Sbjct: 620 DLTEPERLKKNKVLQRAKKQQRIE------VGDEVEVLAYQQRGTIVEI-PSSKEYIVQM 672
Query: 830 GNMK 833
G MK
Sbjct: 673 GVMK 676
>gi|314936676|ref|ZP_07844023.1| DNA mismatch repair protein MutS [Staphylococcus hominis subsp.
hominis C80]
gi|313655295|gb|EFS19040.1| DNA mismatch repair protein MutS [Staphylococcus hominis subsp.
hominis C80]
Length = 783
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 232/796 (29%), Positives = 380/796 (47%), Gaps = 123/796 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE+DK+ V+S + LGRE + + +T + + DE + KH
Sbjct: 4 KTLDVLEFDKIKSFVASETISDLGREKVSKMSPATDFETVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G LS V I + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LSKVSPLIHRAKIGGVLNVTELNVIKRLIQVQNQFKTFYNQLLEEDEGV- 116
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + + QL V L + I + D + D+AS L+ R ++ +++ Q +D
Sbjct: 117 VKYPILNERMNQLPVLTDLYQEINEKCDA-YDLYDNASYELQGIRSKISSTTQRIRQNLD 175
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++++ N+ + ++ + R I A+ + FKG++ S+SG IEP S V +
Sbjct: 176 RIVKSQANQKKLSDAIITVRNDRNVIPVKAEYRQDFKGIVHDQSASGQTLYIEPSSIVEM 235
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + D + + + Q+D + A+A Y+ S GT
Sbjct: 236 NNQISRLRNDEAVERERILTELTGLVAADDNNCLVAESVMGQIDFLTAKARYARSIKGTK 295
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + +E T+YLP AYHPLL KD AN
Sbjct: 296 PTFY----------------------KERTVYLPNAYHPLL-----------NKDTVVAN 322
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T I ++ITGPNTG
Sbjct: 323 T-----------------------------------------IEFIDDIETVIITGPNTG 341
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 342 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFENVYCDIGDEQSIEQSLSTFSSHMKNI 401
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ ++ SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH+ ELK Y
Sbjct: 402 VEILKETDKNSLVLFDELGAGTDPSEGAALAMSILDHVRDIGSLV-MATTHYPELKAYSY 460
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 461 NREGVMNASVEFDVNTLSPTYKLLMGVPGRSNAFDISKKLGLGLNIINKAKTMIGTDEQE 520
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV-QKIS 705
IN +I +E+ + E E L +R H +L R Q+++ QK+
Sbjct: 521 INSMIESLEKNSKRVDEQRIELEKLLREARTTHDDLER---------QYQQYKNYEQKLM 571
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQ 765
D A A Q SA++ + K +++R + +H L
Sbjct: 572 DEAK-------DKANQRIKSATKEADDILKDLREMRDKKGADV-------KEHEL----- 612
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEI 825
+DK +H + K +KQ+ + ++ + + GD V V S+G+KG V+++ + E
Sbjct: 613 ---IDKKKHLEDQYEA--KSLKQNVKKQKWDDIHAGDEVKVLSYGQKGEVLEL-SGEHEA 666
Query: 826 VVQVGNMKWIMKFTDI 841
+VQ+G +K + D+
Sbjct: 667 IVQMGIIKMKLPIEDL 682
>gi|418620520|ref|ZP_13183324.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus hominis VCU122]
gi|374822650|gb|EHR86670.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus hominis VCU122]
Length = 783
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 233/796 (29%), Positives = 380/796 (47%), Gaps = 123/796 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE+DK+ V+S + LGRE + + +T + + DE + KH
Sbjct: 4 KTLDVLEFDKIKSFVASETISDLGREKVSKMSPATDFETVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G LS V I + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LSKVSPLIHRAKIGGVLNVTELNVIKRLIQVQNQFKTFYNQLLEEDEGV- 116
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I++ L + + QL V L + I + D + D+AS L+ R ++ +++ Q +D
Sbjct: 117 IKYPILNERMNQLPVLTDLYQEINEKCDA-YDLYDNASYELQGIRSKISSTTQRIRQNLD 175
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++++ N+ + ++ + R I A+ + FKG++ S+SG IEP S V +
Sbjct: 176 RIVKSQANQKKLSDAIITVRNDRNVIPVKAEYRQDFKGIVHDQSASGQTLYIEPSSIVEM 235
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + + + + Q+D + A+A Y+ S GT
Sbjct: 236 NNQISRLRNDEAVERERILTELTGLVAANDNNCLVAESVMGQIDFLTAKARYARSIKGTK 295
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + +E T+YLP AYHPLL KD AN
Sbjct: 296 PTFY----------------------KERTVYLPNAYHPLL-----------NKDTVVAN 322
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T I ++ITGPNTG
Sbjct: 323 T-----------------------------------------IEFIDDIETVIITGPNTG 341
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 342 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFENVYCDIGDEQSIEQSLSTFSSHMKNI 401
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ ++ SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH+ ELK Y
Sbjct: 402 VEILKETDKNSLVLFDELGAGTDPSEGAALAMSILDHVRDIGSLV-MATTHYPELKAYSY 460
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 461 NREGVMNASVEFDVNTLSPTYKLLMGVPGRSNAFDISKKLGLGLNIINKAKTMIGTDEQE 520
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV-QKIS 705
IN +I +E+ + E E L +R H +L R Q+++ QK+
Sbjct: 521 INSMIESLEKNSKRVDEQRIELEKLLREARTTHDDLER---------QYQQYKNYEQKLM 571
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQ 765
D A A Q SA++ + K +++R + +H L
Sbjct: 572 DEAK-------DKANQRIKSATKEADDILKDLREMRDKKGADV-------KEHEL----- 612
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEI 825
+DK +H + K +KQ+ + ++ + + GD V V S+G+KG V+++ + E
Sbjct: 613 ---IDKKKHLEDQYEA--KSLKQNVKKQKWDDIHAGDEVKVLSYGQKGEVLEL-SGENEA 666
Query: 826 VVQVGNMKWIMKFTDI 841
VVQ+G +K + D+
Sbjct: 667 VVQMGIIKMKLPIEDL 682
>gi|259047143|ref|ZP_05737544.1| DNA mismatch repair protein MutS [Granulicatella adiacens ATCC
49175]
gi|259036193|gb|EEW37448.1| DNA mismatch repair protein MutS [Granulicatella adiacens ATCC
49175]
Length = 785
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 209/691 (30%), Positives = 339/691 (49%), Gaps = 131/691 (18%)
Query: 165 EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
E+ ++ ++ +P +++ +L + K + + EDG + DSASP L R +Q E++
Sbjct: 110 EEEEIALKRVP--RLVEKLESIPEVTKELEASIREDGYVLDSASPNLHGIRVGIQKTEQE 167
Query: 225 LYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLLSSSSGIGSVI--EPL 281
+ + MD + +N + L + +I + R + A+ S G + SG G + EP
Sbjct: 168 IRRQMDQYLTGKNAQYLSDTIITIRNDRYVLPVKAEYKSVFGGTVHDQSGTGQTLFMEPQ 227
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ V LN++L++ + + E +L L++K+ + + + + +LDVVNA+A Y+
Sbjct: 228 AVVNLNNKLREYQVQEKREVERILWELSQKLMPYTNSLHQNHYVLARLDVVNAKALYANE 287
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
T P I +R+ + L KA+HPLL D
Sbjct: 288 INATEPII----------------------DRQNHVALWKAWHPLL-------------D 312
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
E A V DI + + + +VIT
Sbjct: 313 REKA---------------------------------------VSNDIILGEEYQAIVIT 333
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKTI LKTVG+ +MA+ GL+I + E ++V F +FADIGDEQS+ Q+LSTFS
Sbjct: 334 GPNTGGKTILLKTVGVIQLMAQMGLYIPAGENSRVGIFTEIFADIGDEQSIEQNLSTFSS 393
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+ I +I+ Q +SL+L+DEIG+GT+P EG++L +++L+ A S + IA+TH+ EL
Sbjct: 394 HMSNIVSILKQINDKSLLLIDEIGSGTDPQEGSSLAIAILDYIASKQSYV-IASTHYPEL 452
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K Y NA MEFD L+PTY++L G+PGRS+A +I++RLGLP I++ AR L
Sbjct: 453 KAYGYDRPKTINASMEFDGDTLQPTYQLLLGIPGRSNAFDISKRLGLPSIIIDQARGLLS 512
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFR-- 699
++N +I ++E+ + + + RH L LS L ++L + +++F+
Sbjct: 513 EEDQDLNAMISDLEQKRRRAQRDADKMRHQLELSTQLLEDLQK---------ETEQFKAN 563
Query: 700 KVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHV 759
K + + +A A SL+ +S S+ R L QLR
Sbjct: 564 KARLLEEAKERANSLIEQSKDDADKILSEIREL------QLRS----------------- 600
Query: 760 LTSNFQQTTVDKVEHPATASSSVVKDIKQSP---------RVKRTELPNVGDLVHVSSFG 810
+QTTV EH + + D+K +VK + VG V V SFG
Sbjct: 601 -----KQTTVK--EHEMIEKKTALTDLKHEQALKKNKVLRKVKAKKALQVGQSVEVLSFG 653
Query: 811 KKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
++GT+++ + S EE VVQ+G +K + D+
Sbjct: 654 QRGTLVE-KVSDEEWVVQMGIIKMKIAIEDL 683
>gi|22300014|ref|NP_683261.1| recombination and DNA strand exchange inhibitor protein
[Thermosynechococcus elongatus BP-1]
gi|22296199|dbj|BAC10023.1| DNA mismatch repair protein [Thermosynechococcus elongatus BP-1]
Length = 811
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 203/622 (32%), Positives = 309/622 (49%), Gaps = 112/622 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWS---INQTYQDSLRLLDETNAAIEMQK 108
+SL LEW +LC +++FA T G + QL + T S LL +T I ++
Sbjct: 30 KSLGRLEWPRLCQQLATFASTKRG----MRQLQGGDILGGTQAASQVLLAQTAEVIALET 85
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
LD + V + ++ A+ + L+ E LA+ LL + R I+E
Sbjct: 86 VHQVRLDFSQV--TDIEPALARLDHQGCLQGTELLAIAHLLSTAR----QQRRQIEEHGQ 139
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L L Q++ + + + I + + + G + D ASP L Q R Q + ++ Q
Sbjct: 140 L----SELQQLVAGVRTYPEVTQEIYRCITDQGQVSDRASPELAQIRQQQRQCRAQIQQQ 195
Query: 229 MDML-----------IRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLS-SSSGIGS 276
+ + + + + L V + H DQ+ G++ S+SG
Sbjct: 196 LQQILQQRAGAIQEPVVTQRRDRYVLAVKATH--------KDQIV--GIVHDLSASGATL 245
Query: 277 VIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARA 336
IEP + L + LQQ + E + AL++++ D++ +L+ + LDV ARA
Sbjct: 246 YIEPQETIDLQNRLQQLAHQEAEVERAICQALSDQLATISDDLWYLLDVLTTLDVAVARA 305
Query: 337 TYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKT 395
YSL G P F+ Q ++L HPLL+ Q+H ++
Sbjct: 306 RYSLWLQGNPPQ-FVSQTR---------------------LHLKALRHPLLVWQEHHEQG 343
Query: 396 QQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKT 455
Q VPIDI + T
Sbjct: 344 QPV----------------------------------------------VPIDIELQPAT 357
Query: 456 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 515
+V+ ITGPNTGGKT LKT+GLA +MAK+GL++ ++ ++PWF ++ADIGDEQSL+Q+
Sbjct: 358 KVVTITGPNTGGKTATLKTLGLAALMAKAGLYVPAAAPVELPWFTGIWADIGDEQSLTQN 417
Query: 516 LSTFSGHLKQIGNIISQ---STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLT 572
LSTFS H+ I +I+++ + +LVLLDE+GAGT+P EGTAL ++LL AE S LT
Sbjct: 418 LSTFSSHICNIRDILTELEVTGGNTLVLLDEVGAGTDPSEGTALAIALLRYLAEHAS-LT 476
Query: 573 IATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIV 632
ATTH+GELK LKY + FENA +EFDE L PTY++LWG+PG+S+A+ IA+RLGL +
Sbjct: 477 FATTHYGELKALKYQDSRFENASVEFDEETLAPTYRLLWGIPGQSNALAIAQRLGLYPSI 536
Query: 633 VQNARQLYGAASAEINEVIIEM 654
V+ A+ L S +NE+I+ +
Sbjct: 537 VEEAKALLSKDSNSVNEMIMGL 558
>gi|291521669|emb|CBK79962.1| MutS2 family protein [Coprococcus catus GD/7]
Length = 793
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 221/815 (27%), Positives = 390/815 (47%), Gaps = 158/815 (19%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWS--INQTYQDSLRLLDETNAAIEMQKH 109
++LR+LE+ K+ ++ +A + +G+E + S I++ Q + + ++A + K
Sbjct: 4 KALRILEYPKIIDMLTGYASSPMGKELCRNLMPSSDISEILQGQM---ETSDALTRVMKK 60
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRAS-PLRPNEALAVVALLQFSETLQLSLRA------- 161
GS S S IR++R + L+ + + LL + TL ++LRA
Sbjct: 61 GSLSF-----------SGIRDIRGSLLRLKVGSTVGMAELLNIAATLDVALRAKSYGRRE 109
Query: 162 AIKEDAD----LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQ 217
A ED D L+ + PL+ + N + + I +DE+ ++ D ASP LK R Q
Sbjct: 110 ADDEDQDSLEGLFAQIEPLSNL------NHEIRRCI---IDEE-TMADDASPTLKSIRRQ 159
Query: 218 VQMLERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSG 273
+++ +++ + ++ ++N S + V+ +GR C+ A+ S +G++ SS+G
Sbjct: 160 IKLTNERIHSQLASMVSSQNIGSKLQDNLVTMRNGRYCLPVKAEYRSQVQGMIHDQSSTG 219
Query: 274 IGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVN 333
IEP++ V LN++L++ + + E +L L+E +E+ + + +LD +
Sbjct: 220 STLFIEPMAVVKLNNDLRELGSKEKEEIEHILDTLSELAGKSAVMLEQDIAVLTRLDFIF 279
Query: 334 ARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQ 393
A+A+ S ++ G+ EPV ++ I++ K HPL
Sbjct: 280 AKASLSRTYNGS----------------EPVFNE------NGYIHIKKGRHPL------- 310
Query: 394 KTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIAR 453
L ++K+ VPID+ + +
Sbjct: 311 ---------------LDKKKV------------------------------VPIDLILGK 325
Query: 454 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 513
R+L++TGPNTGGKT+ LKTVGL +M ++GLHI + +++++ FD VFADIGDEQS+
Sbjct: 326 DYRMLIVTGPNTGGKTVSLKTVGLFTLMGQAGLHIPAFDHSELAVFDDVFADIGDEQSIE 385
Query: 514 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 573
QSLSTFS H+ I I++ + +++LVL DE+ AGT+P EG AL +++L+ + T+
Sbjct: 386 QSLSTFSSHMTNIVRILNAADAKTLVLFDELCAGTDPTEGAALAIAILKTLLNR-HVTTM 444
Query: 574 ATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVV 633
ATTH+ ELK + + NAC EFD L PTY++L G+PG+S+A I+ +LGLP ++
Sbjct: 445 ATTHYSELKVFALTTEQVCNACCEFDVATLSPTYRLLIGIPGKSNAFAISGKLGLPAHII 504
Query: 634 QNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL-------HKNLLRTR 686
+ A++ E+I ++E + + E + +L H N+ + +
Sbjct: 505 EEAKKNIDVQEQNFEELIADLETSRATIEKEQEELSAYKAQVESLKKRLEEKHDNITKQK 564
Query: 687 RKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQ 746
+IL A+++ + + + DA A + ++ +L S + + ++R +Q
Sbjct: 565 ERILNE-ANEKAQNI--LQDAKDYADHTI-RTMNKLSKSGGVDMKALEQERSRVRDKLNQ 620
Query: 747 SLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHV 806
S N+ Q+ V D KQ GD VHV
Sbjct: 621 S-------NNRKKAAPTAQKAKV-----------YAASDFKQ------------GDSVHV 650
Query: 807 SSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
S KGTV+ SK E+ +Q+G +K + F+D+
Sbjct: 651 RSLDLKGTVVSQPNSKGELSIQMGILKSRIHFSDL 685
>gi|384160390|ref|YP_005542463.1| recombination and DNA strand exchange inhibitor protein [Bacillus
amyloliquefaciens TA208]
gi|384169470|ref|YP_005550848.1| recombination and DNA strand exchange inhibitor [Bacillus
amyloliquefaciens XH7]
gi|328554478|gb|AEB24970.1| recombination and DNA strand exchange inhibitor protein [Bacillus
amyloliquefaciens TA208]
gi|341828749|gb|AEK90000.1| recombination and DNA strand exchange inhibitor [Bacillus
amyloliquefaciens XH7]
Length = 785
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 240/798 (30%), Positives = 380/798 (47%), Gaps = 132/798 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA-----TLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
L +LE+ K+ +++ A +SLGRE LT L I Q L ++E +A + ++
Sbjct: 6 LSLLEFHKVKEQITAHAASSLGREKLLQLKPLTDLADI----QKQLDEVEEASAIMRLRG 61
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
H L+ ++SA+R S L P E + LL + ++ + + + ED
Sbjct: 62 HAPFG------GLTDIRSALRRAEIGSVLTPAEFTELSGLLYAVKQMKHFI-SQMTEDG- 113
Query: 169 LYIRFMPLTQM-IMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
+PL Q +L L + I +D+ G + D ASPAL+ R Q++ LE ++
Sbjct: 114 ---VSIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQLRTLESRVRD 170
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSA 283
++ ++R+ + + + V+ + R I + S G ++ +SSSG IEP +
Sbjct: 171 RLESMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAI 230
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V +N+ LQQA+ + E +L LTE EI + + + LD + A+A Y+ +
Sbjct: 231 VDMNNSLQQAKVKEKQEIERILRMLTEHTAEHTQEIVQNVEVLQTLDFIFAKARYAKAMK 290
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
T P F+ D I L KA HPLL Q Q D+E
Sbjct: 291 ATKP--FMNGD--------------------GFIRLKKARHPLLPQD-----QVVANDIE 323
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
GG+ +VITGP
Sbjct: 324 -----------LGGDYT------------------------------------TIVITGP 336
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT+GL +MA++GLHI + E ++ FD VFADIGDEQS+ QSLSTFS H+
Sbjct: 337 NTGGKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDHVFADIGDEQSIEQSLSTFSSHM 396
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I +I+ + SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK
Sbjct: 397 VNIVSILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARV-LATTHYPELKA 455
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
Y+ NA +EFD L PTYK+L GVPGRS+A I+ RLGLP ++ A+ A
Sbjct: 456 YGYNRQGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAE 515
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
E++ +I +E+ K + E + E + LHK L +++I+E A + K
Sbjct: 516 HNEVDLMIASLEQSKKRADEELSETESIRKEAEKLHKEL---QQQIIELNAQK-----DK 567
Query: 704 ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+ + A K+A++L +A +A ++ ++LR S Q K +H L
Sbjct: 568 LMEEAE------QKAAEKLEDAAKEAEQII----RELR-SIKQEHRSFK----EHEL--- 609
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+D + A + K + + ++ GD V V +FG+KG +++ + ++
Sbjct: 610 -----IDAKKRLGDAMPAFEKSKQPERKTEKKRELKPGDEVKVLTFGQKGALLE-KTGEK 663
Query: 824 EIVVQVGNMKWIMKFTDI 841
E VQ+G +K +K D+
Sbjct: 664 EWNVQIGILKMKVKEKDL 681
>gi|228476275|ref|ZP_04060977.1| MutS2 protein [Staphylococcus hominis SK119]
gi|228269678|gb|EEK11180.1| MutS2 protein [Staphylococcus hominis SK119]
Length = 783
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 232/796 (29%), Positives = 380/796 (47%), Gaps = 123/796 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE+DK+ V+S + LGRE + + +T + + DE + KH
Sbjct: 4 KTLDVLEFDKIKSFVASETISDLGREKVSKMSPATDFETVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G LS V I + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LSKVSPLIHRAKIGGVLNVTELNVIKRLIQVQNQFKTFYNQLLEEDEGV- 116
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I++ L + + QL V L + I + D + D+AS L+ R ++ +++ Q +D
Sbjct: 117 IKYPILNERMNQLPVLTDLYQEINEKCDA-YDLYDNASYELQGIRSKISSTTQRIRQNLD 175
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++++ N+ + ++ + R I A+ + FKG++ S+SG IEP S V +
Sbjct: 176 RIVKSQANQKKLSDAIITVRNDRNVIPVKAEYRQDFKGIVHDQSASGQTLYIEPSSIVEM 235
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + + + + Q+D + A+A Y+ S GT
Sbjct: 236 NNQISRLRNDEAVERERILTELTGLVAANDNNCLVAESVMGQIDFLTAKARYARSIKGTK 295
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + +E T+YLP AYHP+L KD AN
Sbjct: 296 PTFY----------------------KERTVYLPNAYHPIL-----------NKDTVVAN 322
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T I ++ITGPNTG
Sbjct: 323 T-----------------------------------------IEFIDDIETVIITGPNTG 341
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 342 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFENVYCDIGDEQSIEQSLSTFSSHMKNI 401
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ ++ SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH+ ELK Y
Sbjct: 402 VEILKETDKNSLVLFDELGAGTDPSEGAALAMSILDHVRDIGSLV-MATTHYPELKAYSY 460
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 461 NREGVMNASVEFDVNTLSPTYKLLMGVPGRSNAFDISKKLGLGLNIINKAKTMIGTDEQE 520
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV-QKIS 705
IN +I +E+ + E E L +R H +L R Q+++ QK+
Sbjct: 521 INSMIESLEKNSKRVDEQRIELEKLLREARTTHDDLER---------QYQQYKNYEQKLM 571
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQ 765
D A A Q SA++ + K +++R + +H L
Sbjct: 572 DEAK-------DKANQRIKSATKEADDILKDLREMRDKKGADV-------KEHEL----- 612
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEI 825
+DK +H + K +KQ+ + ++ + + GD V V S+G+KG V+++ + E
Sbjct: 613 ---IDKKKHLEDQYEA--KSLKQNVKKQKWDDIHAGDEVKVLSYGQKGEVLEL-SGENEA 666
Query: 826 VVQVGNMKWIMKFTDI 841
VVQ+G +K + D+
Sbjct: 667 VVQMGIIKMKLPIEDL 682
>gi|254432766|ref|ZP_05046469.1| MutS2 family protein [Cyanobium sp. PCC 7001]
gi|197627219|gb|EDY39778.1| MutS2 family protein [Cyanobium sp. PCC 7001]
Length = 804
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 235/819 (28%), Positives = 378/819 (46%), Gaps = 149/819 (18%)
Query: 47 SRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM 106
S+V +E+L +LEW +LC +S FA T GR + ++ + + S LL ET + +
Sbjct: 2 SKVEHEALELLEWPRLCDQLSGFASTEAGRRHC--RALALPLSLEHSRALLAETTEMLAL 59
Query: 107 QKHGSCSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKE 165
L GV D++ AVVAL T A+
Sbjct: 60 DGLLEGGLSFQGVADIT---------------------AVVALCAKGGTAAGEALLALAT 98
Query: 166 DA-----------DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQS 214
D +R + + ++ +L L + + ++E G + D AS L+
Sbjct: 99 TLAAARRLRRQIDDPALRPV-CSALVAELRTLPELEQRLHFALEEGGRVADRASAPLEAV 157
Query: 215 RGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGR--LCIRTGADQLSFKGLLL-SSS 271
R Q++ L + + + L+R ++ +GR L ++ GA GL+ SS+
Sbjct: 158 RRQLKGLRAERRERLQELLRRHAPLLQDTVIAERNGRPVLAVKAGAAA-QLPGLVHDSSA 216
Query: 272 SGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDV 331
SG +EP + + L + L+ + E+ VL L+ + + + ++++ +++LD
Sbjct: 217 SGSTVFVEPQAVISLGNRLRDLEGRERELEQAVLAELSALVGAEAEALQQLHAVLLRLDA 276
Query: 332 VNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQH 391
ARA Y G P++ + H P + L HPLLL Q
Sbjct: 277 ALARARYGAWLGAVRPDL-------EADPHAPFS-------------LVDLSHPLLLWQQ 316
Query: 392 KQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFI 451
+++ G+A VP+ I +
Sbjct: 317 RREQ---------------------GHAV------------------------VPVSITV 331
Query: 452 ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQS 511
+ RV+ ITGPNTGGKT+ LK++GLA +MA++GL + S ++PW +V ADIGDEQS
Sbjct: 332 GAELRVVAITGPNTGGKTVTLKSLGLAALMARAGLFLPCSGTPRLPWCGAVLADIGDEQS 391
Query: 512 LSQSLSTFSGHLKQIGNIISQ----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
L Q+LSTFSGH+++I I++ +LVLLDE+GAGT+P+EG+AL +LL A+
Sbjct: 392 LQQNLSTFSGHIRRIARILAALAEPRQGATLVLLDEVGAGTDPVEGSALATALLRHLADR 451
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
+ LTIATTH GELK LKY++ FENA + FD L PTY++ WG+PGRS+A+ IA+RLG
Sbjct: 452 -ARLTIATTHFGELKALKYADPRFENASVAFDVDTLSPTYRLQWGIPGRSNALAIAQRLG 510
Query: 628 LPGIVVQNARQLY-GAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTR 686
L V++ A+ L E+N+VI+ +E + + E EA L + LH+ LL
Sbjct: 511 LSEAVLEQAQALLEPGGEGEVNQVIVGLESQRQRQQEAAEEAAALLARTELLHEELL--- 567
Query: 687 RKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQ 746
S+ ++ Q+ ++ L + +QL S + + V + ++LR +
Sbjct: 568 --------SRWHQQKQQSAE-------LQEQRRRQLERSIREGQQEVRRIIRRLRQGGDR 612
Query: 747 SLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE----LPNVGD 802
S G+ Q T+ + ++EH + P +R E +P VGD
Sbjct: 613 S----AAGRGQLGETARQAGQRLKQLEH------------QHRPAPERREHGGWMPEVGD 656
Query: 803 LVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V V S GK V+ + E+ V+ G M+ + I
Sbjct: 657 RVRVLSLGKAAEVLALADGGRELTVRCGVMRLTVPLEGI 695
>gi|87125334|ref|ZP_01081180.1| MutS 2 protein [Synechococcus sp. RS9917]
gi|86167103|gb|EAQ68364.1| MutS 2 protein [Synechococcus sp. RS9917]
Length = 798
Score = 266 bits (680), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 202/626 (32%), Positives = 309/626 (49%), Gaps = 100/626 (15%)
Query: 44 DKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA 103
D++ + +++L +LEW +LC ++ FA T+ G+ L ++ LR
Sbjct: 5 DRRVDLWHDTLELLEWPRLCQHLAQFASTAAGQRRCL------DEPLPSDLR-------- 50
Query: 104 IEMQKHGSCSLDLTGVDLSLVKSAI--REVRRASP--LRPNEALAV--VALLQFSETLQL 157
E ++ + S++L G+D +V + + V P LR + ALL ++TL
Sbjct: 51 -ESRERLARSIELAGLD-GVVDGGLSFQGVHDLEPVLLRCCKGGTADGEALLAVADTLAA 108
Query: 158 S--LRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSR 215
+ LR I +D +L R L + + L L + + ++E G + D AS L R
Sbjct: 109 ARRLRRQI-DDPELRPRCTALLKDVATLP---DLEQRLKFSLEEGGRVADRASAVLAGLR 164
Query: 216 GQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGR--LCIRTGADQLSFKGLLLSSSSG 273
GQ Q + ++ + +IR ++ ++ HGR L ++ GA + SS+SG
Sbjct: 165 GQWQTVRQQRRDRLQEVIRRWASQLQDTVIAERHGRPVLAVKAGAVAQCPGMVHDSSASG 224
Query: 274 IGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVN 333
+EP V L + L + + E+ VL L+ + + + + ++ ++ LD+
Sbjct: 225 STVFVEPRQVVDLGNRLADLEGRIREEEQRVLAELSAAVAAEGEALTRLGAVLLVLDLSL 284
Query: 334 ARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQ 393
RA Y G P + ++ E + L HPLL+ Q ++
Sbjct: 285 TRARYGQWLGAVPPQL--------------------EADPEAPLVLHDLRHPLLVWQERR 324
Query: 394 KTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIAR 453
GG A VPI + ++
Sbjct: 325 ---------------------AGGGAV------------------------VPISVEVSS 339
Query: 454 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 513
RV+ ITGPNTGGKT+ LK++GLA +MA++GL + S +PW V ADIGDEQSL
Sbjct: 340 HLRVVAITGPNTGGKTVTLKSIGLAALMARAGLWLPCSGRPSLPWCAQVLADIGDEQSLQ 399
Query: 514 QSLSTFSGHLKQIGNIIS---QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL 570
QSLSTFSGH+K+IG I+ + +LVLLDE+GAGT+P EGTAL +LL + A+ +
Sbjct: 400 QSLSTFSGHVKRIGRILEALHSGAAPALVLLDEVGAGTDPSEGTALATALLRSLADR-AR 458
Query: 571 LTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPG 630
LTIATTH GELK LKYS+ FENA + FD L PTY++LWG+PGRS+A+ IA RLGL
Sbjct: 459 LTIATTHFGELKALKYSDPRFENASVAFDSDTLSPTYRLLWGIPGRSNALAIATRLGLDA 518
Query: 631 IVVQNARQLYGA-ASAEINEVIIEME 655
V+ A++L A ++N VI +E
Sbjct: 519 DVIAQAQELLAPRAEGDVNAVIRGLE 544
>gi|385799733|ref|YP_005836137.1| MutS2 family protein [Halanaerobium praevalens DSM 2228]
gi|309389097|gb|ADO76977.1| MutS2 family protein [Halanaerobium praevalens DSM 2228]
Length = 791
Score = 265 bits (678), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 229/825 (27%), Positives = 375/825 (45%), Gaps = 176/825 (21%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN--QTYQDSLRLLDETNAAI------ 104
SL VLE+ K+ + A T +G+E + L +N + +D L + + I
Sbjct: 5 SLEVLEYKKIIKMTAQRAATKIGKE-IIQNLEPVNNAEYIKDRLEKVSALKSMIVEFSNP 63
Query: 105 ----------EMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSET 154
+++K S+ L+ +S V++ IR AV L ++
Sbjct: 64 PFGGARDIREDLKKAAKGSV-LSTTAISRVRNTIR--------------AVFELKRYLNG 108
Query: 155 LQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQS 214
++ +L I E + + + L SL + I + ++E + D AS L+
Sbjct: 109 IKSNLDPRIIER-----EYQKIYDLCSDLQTTPSLAREIDRCLNEYNEVADEASNKLRSL 163
Query: 215 RGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQL-SFKGLLLS-S 270
R Q++ +E + +D +I+++ + + E V+ R + ++ SF G++ S
Sbjct: 164 RAQIESIENSIRDKLDSIIKSKKYQDILQENIVTRRENRYVVPVKQEKRNSFDGIVHGQS 223
Query: 271 SSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLD 330
+SG+ +EP++ V LN++L++ +A + +L L+ K+ + I++ L I LD
Sbjct: 224 ASGLTLFMEPMAVVRLNNQLREVQAKENVEIQRILQMLSSKIAQSENIIKRNLMIISNLD 283
Query: 331 VVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQ 390
+ A A +SL F P + I L KA HPLL
Sbjct: 284 SLAAAAKFSLDFDCNQPEV----------------------NESGIIELKKARHPLL--- 318
Query: 391 HKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIF 450
GE+ PVPID+
Sbjct: 319 --------------------------------GEE------------------PVPIDLK 328
Query: 451 IARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQ 510
+ LVITGPNTGGKT+ LKTVGL +M ++GLHI ++ + + F+ +FADIGDEQ
Sbjct: 329 LGNDIATLVITGPNTGGKTVALKTVGLLTLMTQTGLHIPAAANSTISIFNKIFADIGDEQ 388
Query: 511 SLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL 570
S+ QSLSTFS H+ +I +++S + +LVL+DE+G GT+P EG ALG+S+LE E +
Sbjct: 389 SIEQSLSTFSSHMHRIRKFLAESDNSTLVLMDELGVGTDPEEGAALGISILEKLQEKKA- 447
Query: 571 LTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPG 630
TIATTH+ +LK+ Y + ENA +EFD LKPTYK++ GVPG S+A IA RLG+P
Sbjct: 448 TTIATTHYSQLKSYAYGTEEVENASVEFDLDTLKPTYKLIMGVPGGSNAFEIALRLGIPE 507
Query: 631 IVVQNARQLYGAASAEINEVIIEM--ERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK 688
++ AR L ++ ++I E+ ER + Q L H EA
Sbjct: 508 EIIDRARSLLSEEEIKVEDIINELNQERNRYQKLRHEMEA-------------------- 547
Query: 689 ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL 748
R R+ + + + K +++ + +A ++V + + A + +
Sbjct: 548 -------YRNREKELKEKYEKMIKEQQQKHEEEIQAARKEAEAIV----TETKKEAKRII 596
Query: 749 HCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP---------- 798
K GKN + Q++ VD+ A +S +D+K+ +V E
Sbjct: 597 SNLK-GKNYN------QRSEVDR------AQTSANQDLKELSQVLEAENEKEEAKISASK 643
Query: 799 -NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
VGD V V S G+KG +I ++ K+E +Q G M+ D+V
Sbjct: 644 FEVGDQVRVHSIGRKGEIINIDQDKKEAKIQAGIMQVTASLADLV 688
>gi|312143799|ref|YP_003995245.1| MutS2 family protein [Halanaerobium hydrogeniformans]
gi|311904450|gb|ADQ14891.1| MutS2 family protein [Halanaerobium hydrogeniformans]
Length = 790
Score = 265 bits (678), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 187/625 (29%), Positives = 311/625 (49%), Gaps = 107/625 (17%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
SL VLE+ K+ + + A T +G+E + L +N +L + T + + G
Sbjct: 5 SLEVLEYYKIINMTAERAATRVGKE-IVENLKPVNNEAYIKEKLAEVTALKTMITEFGKL 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRA---------AI 163
IR++R + L+ E +V++ + ++ ++ +LR I
Sbjct: 64 PF-----------GGIRDIRES--LKKAEKGSVLSTDKIND-IRNTLRGIKEIDKYFVKI 109
Query: 164 KEDADLYI---RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQM 220
K++ D I + L ++ +L L + I + +++ G I D AS LK R ++
Sbjct: 110 KDELDPRIIEREYQLLYEITAELLPREKLAREIDRCINDYGEIADDASSKLKSLRAKIDS 169
Query: 221 LERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGS 276
+E + +D +I++ + + E V+ R + + + F G++ S+SG+
Sbjct: 170 IENGIRDKLDSIIKSSKYQDMLQESIVTKRENRYVVPVKQEHRNKFDGIIHGQSASGLTL 229
Query: 277 VIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARA 336
+EP++ V LN++L++ RA + + +L L+ K+ + I+K L I LDV++A A
Sbjct: 230 FMEPMAVVRLNNQLREVRAQESAEIQRILQVLSSKIAEQAEIIKKDLKIISHLDVISASA 289
Query: 337 TYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQ 396
+SL +P+I +E I L +A HPLL ++
Sbjct: 290 RFSLDHDCNAPDI----------------------NQEGLIDLKEARHPLLKEE------ 321
Query: 397 QAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTR 456
PVPID+ + +
Sbjct: 322 -----------------------------------------------PVPIDVQLGDQIS 334
Query: 457 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSL 516
LVITGPNTGGKT+ LKTVGL +MA++G+HI + + + F VFADIGDEQS+ QSL
Sbjct: 335 TLVITGPNTGGKTVSLKTVGLLTLMAQTGMHIPAKANSTIAVFKKVFADIGDEQSIEQSL 394
Query: 517 STFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 576
STFS H+ +I +++S S +LVL+DE+G GT+P EG ALG+S+LE + G+ +TIATT
Sbjct: 395 STFSSHMTKIKEFLAESDSNTLVLMDELGVGTDPEEGAALGISILEELQQKGA-VTIATT 453
Query: 577 HHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 636
H+ +LK+ Y D ENA +EFD L+PTY ++ GVPG S+A IA RLG+P +++ A
Sbjct: 454 HYSQLKSYAYGADNVENASVEFDIESLRPTYNLIMGVPGGSNAFEIALRLGIPEGIIKRA 513
Query: 637 RQLYGAASAEINEVIIEMERFKTQF 661
R L ++ ++I E+ + + ++
Sbjct: 514 RSLLTEEEIKVEDIINELNQERKRY 538
>gi|308174555|ref|YP_003921260.1| DNA mismatch repair enzyme [Bacillus amyloliquefaciens DSM 7]
gi|307607419|emb|CBI43790.1| putative DNA mismatch repair enzyme [Bacillus amyloliquefaciens DSM
7]
Length = 785
Score = 265 bits (678), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 240/798 (30%), Positives = 379/798 (47%), Gaps = 132/798 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA-----TLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
L LE+ K+ +++ A +SLGRE LT L I Q L ++E +A + ++
Sbjct: 6 LSSLEFHKVKEQITAHAASSLGREKLLQLKPLTDLADI----QKQLDEVEEASAIMRLRG 61
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
H L+ ++SA+R S L P E + LL + ++ + + + ED
Sbjct: 62 HAPFG------GLTDIRSALRRAEIGSVLTPAEFTELSGLLYAVKQMKHFI-SQMTEDG- 113
Query: 169 LYIRFMPLTQM-IMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
+PL Q +L L + I +D+ G + D ASPAL+ R Q++ LE ++
Sbjct: 114 ---VSIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQLRTLESRVRD 170
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSA 283
++ ++R+ + + + V+ + R I + S G ++ +SSSG IEP +
Sbjct: 171 RLESMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAI 230
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V +N+ LQQA+ + E +L LTE EI + + + LD + A+A Y+ +
Sbjct: 231 VDMNNSLQQAKVKEKQEIERILRMLTEHTAEHTQEIVQNVEVLQTLDSIFAKARYAKAMK 290
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
T P F+ D I L KA HPLL Q Q D+E
Sbjct: 291 ATKP--FMNGD--------------------GFIRLKKARHPLLPQD-----QVVANDIE 323
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
GG+ +VITGP
Sbjct: 324 -----------LGGDYT------------------------------------TIVITGP 336
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT+GL +MA++GLHI + E ++ FD VFADIGDEQS+ QSLSTFS H+
Sbjct: 337 NTGGKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDHVFADIGDEQSIEQSLSTFSSHM 396
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I +I+ + SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK
Sbjct: 397 VNIVSILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARV-LATTHYPELKA 455
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
Y+ NA +EFD L PTYK+L GVPGRS+A I+ RLGLP ++ A+ A
Sbjct: 456 YGYNRQGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAE 515
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
E++ +I +E+ K + E + E + LHK L +++I+E A + K
Sbjct: 516 HNEVDLMIASLEKSKKRADEELSETESIRKEAEKLHKEL---QQQIIELNAQK-----DK 567
Query: 704 ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+ + A K+A++L +A +A ++ ++LR S Q K +H L
Sbjct: 568 LMEEAE------QKAAEKLEDAAKEAEQII----RELR-SIKQEHRSFK----EHEL--- 609
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+D + A + K + + ++ GD V V +FG+KG +++ + ++
Sbjct: 610 -----IDAKKRLGDAMPAFEKSKQPERKTEKKRELKPGDEVKVLTFGQKGALLE-KTGEK 663
Query: 824 EIVVQVGNMKWIMKFTDI 841
E VQ+G +K +K D+
Sbjct: 664 EWNVQIGILKMKVKEKDL 681
>gi|384165327|ref|YP_005546706.1| DNA mismatch repair enzyme [Bacillus amyloliquefaciens LL3]
gi|328912882|gb|AEB64478.1| putative DNA mismatch repair enzyme [Bacillus amyloliquefaciens
LL3]
Length = 785
Score = 265 bits (677), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 240/798 (30%), Positives = 379/798 (47%), Gaps = 132/798 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA-----TLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
L LE+ K+ +++ A +SLGRE LT L I Q L ++E +A + ++
Sbjct: 6 LSSLEFHKVKEQITAHAASSLGREKLLQLKPLTDLADI----QKQLDEVEEASAIMRLRG 61
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
H L+ ++SA+R S L P E + LL + ++ + + + ED
Sbjct: 62 HAPFG------GLTDIRSALRRAEIGSVLTPAEFTELSGLLYAVKQMKHFI-SQMTEDG- 113
Query: 169 LYIRFMPLTQM-IMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
+PL Q +L L + I +D+ G + D ASPAL+ R Q++ LE ++
Sbjct: 114 ---VSIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQLRTLESRVRD 170
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSA 283
++ ++R+ + + + V+ + R I + S G ++ +SSSG IEP +
Sbjct: 171 RLESMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAI 230
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V +N+ LQQA+ + E +L LTE EI + + + LD + A+A Y+ +
Sbjct: 231 VDMNNSLQQAKVKEKQEIERILRMLTEHTAEHTQEIVQNVEVLQTLDFIFAKARYAKAMK 290
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
T P F+ D I L KA HPLL Q Q D+E
Sbjct: 291 ATKP--FMNGD--------------------GFIRLKKARHPLLPQD-----QVVANDIE 323
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
GG+ +VITGP
Sbjct: 324 -----------LGGDYT------------------------------------TIVITGP 336
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT+GL +MA++GLHI + E ++ FD VFADIGDEQS+ QSLSTFS H+
Sbjct: 337 NTGGKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDHVFADIGDEQSIEQSLSTFSSHM 396
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I +I+ + SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK
Sbjct: 397 VNIVSILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARV-LATTHYPELKA 455
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
Y+ NA +EFD L PTYK+L GVPGRS+A I+ RLGLP ++ A+ A
Sbjct: 456 YGYNRQGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAE 515
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
E++ +I +E+ K + E + E + LHK L +++I+E A + K
Sbjct: 516 HNEVDLMIASLEQSKKRADEELSETESIRKEAEKLHKEL---QQQIIELNAQK-----DK 567
Query: 704 ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+ + A K+A++L +A +A ++ ++LR S Q K +H L
Sbjct: 568 LMEEAE------QKAAEKLEDAAKEAEQII----RELR-SIKQEHRSFK----EHEL--- 609
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+D + A + K + + ++ GD V V +FG+KG +++ + ++
Sbjct: 610 -----IDAKKRLGDAMPAFEKSKQPERKTEKKRELKPGDEVKVLTFGQKGALLE-KTGEK 663
Query: 824 EIVVQVGNMKWIMKFTDI 841
E VQ+G +K +K D+
Sbjct: 664 EWNVQIGILKMKVKEKDL 681
>gi|398818390|ref|ZP_10576981.1| MutS2 family protein [Brevibacillus sp. BC25]
gi|398027832|gb|EJL21362.1| MutS2 family protein [Brevibacillus sp. BC25]
Length = 785
Score = 265 bits (676), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 242/804 (30%), Positives = 387/804 (48%), Gaps = 144/804 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
+ LE+DK+ + A + G+E ++L LRL DE A + + +
Sbjct: 6 FKTLEYDKIVALLIDKASCTYGKEKA-SELIPF-------LRL-DEVITAQQGTEQAATV 56
Query: 114 LDLTGVDLSLVKSAIREVRRASPL---RPNEALAVVALLQFSETLQLSLRAA-----IKE 165
L L G S+ IR++R P+ R N LA + LL + T+ R + E
Sbjct: 57 LRLKG---SVPLGGIRDIR--GPVQRARLNAMLAPMELLDIASTVMAGRRLKTFLLDMCE 111
Query: 166 DADLYIRFMPLTQMIMQLFVN-RSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
D +L PL Q + R L I + +DE+G I DSAS L+Q R +++ LE +
Sbjct: 112 DHEL-----PLLQQEAERIEGLRELETEIRRCIDENGDILDSASLELRQVRQEIRQLESR 166
Query: 225 LYQLMDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEP 280
+ + +D + R+ + + +E + +I G R I + S G ++ S+SG IEP
Sbjct: 167 IREKLDQMTRSSTYQKMLMENIVTIRGDRFVIPVKQEYRSVFGGIVHDQSASGATLFIEP 226
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
V +N++L++ R + E +L LTE++ ++ + + + +LD + A+A +
Sbjct: 227 EVIVEMNNKLRELRLREEREVERILYVLTEQVSFAVEALIENTEALTELDFMFAKAQLAW 286
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
S P I ++R + + + KA HPL+
Sbjct: 287 SMKAICPRI---------------------NDRGY-VNMRKARHPLI------------- 311
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
P E+ V P+D+ + + + +V+
Sbjct: 312 ------------------------------PREVVV---------PVDVELGGEYQAIVV 332
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT+ LKT+GL +M +GLHI + E +++ F S+FADIGDEQS+ QSLSTFS
Sbjct: 333 TGPNTGGKTVSLKTIGLLSLMTMAGLHIPAEEESEMTVFSSIFADIGDEQSIEQSLSTFS 392
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H+ I I+++ +SLVL DE+GAGT+P EG AL MS+++ +SG+ L +ATTH+ E
Sbjct: 393 SHMTNIIQILAKMDDKSLVLFDELGAGTDPTEGAALAMSIIDHVIDSGARL-VATTHYSE 451
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK Y NA +EFD L+PTY++L GVPGRS+A IA RLGLP ++ AR
Sbjct: 452 LKAYAYDRPEVINASVEFDVQTLRPTYRLLIGVPGRSNAFAIARRLGLPEHIIDVAR--- 508
Query: 641 GAASAEINEV---IIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
G+ S E N+V I +ER + A+ +R + L R + A ++
Sbjct: 509 GSISEEDNQVESMIASLERNRKSAEADSLAAKA----ARQEAEELRRQLEEERAQFAEEK 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
+++++ D A IA L + A+ + R L A+ + + + K
Sbjct: 565 NKRMERAEDEARIAVQLAKEEAETII------RELREMMAEGMEIKEHRLIDAKK----- 613
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L + + +KV+ PA A V+ T++ VGD V V+SFG+KGTV++
Sbjct: 614 -RLGNAVLELEKEKVKKPAKA-------------VRATQI-KVGDEVMVTSFGQKGTVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G MK +K D+
Sbjct: 659 -KVNNEEFLVQIGIMKMKVKRDDM 681
>gi|304440485|ref|ZP_07400372.1| DNA mismatch repair protein MutS [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304370963|gb|EFM24582.1| DNA mismatch repair protein MutS [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 786
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 223/804 (27%), Positives = 396/804 (49%), Gaps = 139/804 (17%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM-QKHGS 111
+++ LE+DK+ ++ + + LGRE + SI++T ++ L ET+ A+++ K G+
Sbjct: 6 AIKTLEFDKILENLKTKCESDLGREVADSTDISISETEINNR--LKETDEAVDIIDKKGT 63
Query: 112 CSLDLTGVDLSLVKSAIREVRRASP-LRPNEALAVVALLQFSETLQLS--LRAAIKEDAD 168
L I +++ A+ L L +LL ++ L++S L+ I+E+ D
Sbjct: 64 PPL-----------FGIHDIKEATARLDLGGTLGARSLLNVADFLRVSRLLKKYIEEEDD 112
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
+ M LF ++ + I + + + I DSASP L+Q R + + +++ +
Sbjct: 113 EGKSHEIIEDMASLLFTSKQIEDRISECIISEEEISDSASPKLRQIRRNIFVKNKQIREK 172
Query: 229 MDMLIRNENNESLFLE---VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
+D ++ N+ S +L+ V+ GR I ++ + KGL+ S++G + IEP++
Sbjct: 173 LDSIV---NSGSKYLQDNIVTMREGRYVIPVKSENKNKIKGLVHDMSATGQTAYIEPIAV 229
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+EL+ + E +L L+ + +I+ + + +LD + A+A +
Sbjct: 230 VNLNNELKTLEIEEREEIERILAELSAYVADYSLQIKGNQDILSRLDFIFAKAKLAFEME 289
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
T P I + ++ L KA HPLL
Sbjct: 290 ATKPKI----------------------NNDLSLKLYKARHPLL---------------- 311
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
+K E VPIDI + ++ L+ITGP
Sbjct: 312 -----------------KKNE-------------------VVPIDISLGKEFTSLIITGP 335
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKTVGL +MA+ GL I + E ++V FD +F+DIGDEQS+ QSLSTFS H+
Sbjct: 336 NTGGKTVTLKTVGLLNIMAQYGLFIPAEEGSQVGIFDKIFSDIGDEQSIEQSLSTFSSHM 395
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I NI+ + +SLVL DE+GAGT+P EG AL S+++ E + I+TTH+ +LKT
Sbjct: 396 VNIVNILENADERSLVLFDELGAGTDPTEGAALARSIMDFMLER-KIRCISTTHYNQLKT 454
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
+ + +NA MEFD L+PTY+++ G+PG+S+A I++RLGL ++++A++
Sbjct: 455 YALTTEGVQNASMEFDVDTLRPTYRLIIGIPGKSNAFLISKRLGLRDDIIEDAKKQMSQD 514
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
S E +V+ +E+ + + +H EA + + +L + +++ E AS + ++
Sbjct: 515 SIEFEKVLENIEKDRWEIEKHRSEAELYKI-------DLEKQNKRLEEELASMKEKREDI 567
Query: 704 ISDAAAIARSLVHKSAQQLCPSASQARSLVHK--RAQQLRPSASQSL---HCTKVGKNQH 758
+ A AR +++++ ++ + S+ + +V + + Q R SQ L + K K
Sbjct: 568 LEKARREARQIINRAKEESELALSEIKDVVSEVSKDQARRLQESQDLIRENLNKASKKDK 627
Query: 759 VLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKV 818
+L ++ V++PA ++IK G+ V ++S KGTV+++
Sbjct: 628 IL--------IEAVKNPA-------ENIKP------------GETVMIASLNAKGTVLEL 660
Query: 819 EPSKEEIVVQVGNMKWIMKFTDIV 842
S +++VQ G MK +K I+
Sbjct: 661 PDSNGDVLVQAGMMKMKVKKEAII 684
>gi|227510203|ref|ZP_03940252.1| MutS family DNA mismatch repair protein [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227190408|gb|EEI70475.1| MutS family DNA mismatch repair protein [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 788
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 229/802 (28%), Positives = 375/802 (46%), Gaps = 137/802 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE++K+ ++++ T GRE + QL ++ + RL + + A ++ G
Sbjct: 6 LETLEYNKIKDQLANYLTTDRGRE-IIDQLRPSSKFEEVDHRLKETEDGANIVRLQGEIP 64
Query: 114 LDLTGVDLSLVKSAIREVR-RASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L+ + ++ +R + L E + LL+ T+ ED +L +
Sbjct: 65 I----PKLTEISPYMKRLRIENASLSGTELSHITKLLRAVRTINDFFDNFQDEDVNLTV- 119
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
++Q++ QL + + K ++Q +++DGSI D+AS L+ R + + + M
Sbjct: 120 ---VSQIVSQLTLMPEITKRMVQSINDDGSILDTASSELRTIRRTINRTQNDIRSRMGKY 176
Query: 233 IRNENNESLFLEVSSIHGR-----LCIRTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
++ ++S +L S I R L IR Q F G++ S+SG +EP + V +
Sbjct: 177 LKG--SDSKYLTESIITMREDRFVLPIRADYKQ-HFGGIVHDQSASGQTLYVEPSNVVEM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N++L++ + + E +L LT+ ++ E+ +N + QLD VNA+A ++ G
Sbjct: 234 NNQLRRDQLAERAEERRILAELTDLIRPYRSELLNNMNLVGQLDFVNAKAKFAHQIGAVQ 293
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P I RE + L +A HPL+ +D AN
Sbjct: 294 PEI----------------------SRENVVNLRRARHPLI-----------ARDKAVAN 320
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
DI I R ++ITGPNTG
Sbjct: 321 -----------------------------------------DIQIGDGYRTIIITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKTVGL +M +SGL I ++E +++ FD VFADIGD+QS+ +LSTFS H+ I
Sbjct: 340 GKTITLKTVGLLQLMGQSGLFITANEESQIGVFDDVFADIGDDQSIEANLSTFSSHMDNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
+I++ +SQSL+LLDE+GAGT+P EG AL M++++A +SG L IATTH+ ELK Y
Sbjct: 400 ISILNGMSSQSLILLDELGAGTDPKEGAALAMAIIDAIHQSGCEL-IATTHYPELKAYAY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA MEFD L+PTY+ L G+PG+S+A+NIA +LGL +++ AR + + +
Sbjct: 459 NRSGIINASMEFDIETLRPTYRFLMGIPGQSNALNIASKLGLSKEIIEKARAFTDSENQD 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRT-------RRKILEHCASQRFR 699
IN +I E+ + + + L S LH +L + +LE Q +
Sbjct: 519 INNMIDELTAQTKRAHDEADQLDEQLTDSTKLHDDLQNQFTQYQNQKDHLLEQAREQANQ 578
Query: 700 KVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHV 759
V+K +A + +HK QQ+ SA + L+ + R + +L KV + +
Sbjct: 579 VVEKAKISADKIIADLHKKQQQVGQSAIKENELIDAKGALNRLEVTPNLKKNKVLRKEKA 638
Query: 760 LTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVE 819
+F HP GD V V S+G++GT+I+ E
Sbjct: 639 -KHDF---------HP-------------------------GDEVLVKSYGQQGTLIRQE 663
Query: 820 PSKEEIVVQVGNMKWIMKFTDI 841
+ VQ+G +K + D+
Sbjct: 664 KNG-AWEVQLGILKMQIDENDL 684
>gi|159902779|ref|YP_001550123.1| DNA mismatch repair protein MutS family protein [Prochlorococcus
marinus str. MIT 9211]
gi|159887955|gb|ABX08169.1| putative DNA mismatch repair protein MutS family [Prochlorococcus
marinus str. MIT 9211]
Length = 805
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 205/617 (33%), Positives = 321/617 (52%), Gaps = 98/617 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLG-REATLTQLWSINQTYQDSLRLLDETNAAIEMQKHG 110
E+L +L+W LC+ +S+FA T+ G RE + I Q + + + L ET + K+
Sbjct: 19 ETLELLDWRILCNHLSTFAPTAKGKRECKNIE---IPQDIETTRKRLSETLEIGTLDKNL 75
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR-AAIKEDADL 169
+ GV+ + I + E LL +ETL+ R I ED
Sbjct: 76 EAGISFQGVNE--LDGVILHCSKGGIASGEE------LLSIAETLRAVRRLKKIFEDP-- 125
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ T + + L + L K ++ ++E G + D AS L Q R +Q L ++
Sbjct: 126 -VSRPYTTSLFIDLATHHELEKVLLFGIEEGGRVADRASNQLSQLRRHLQDLRIGRRSIL 184
Query: 230 DMLIRNENNESLFLE--VSSIHGR--LCIRTGA-DQLSFKGLLL-SSSSGIGSVIEPLSA 283
LIR N S+ + ++ +GR + ++ G+ DQ+ G++ SSSSG +EP
Sbjct: 185 QDLIRR--NGSILQDTVIAERYGRPVIAMKVGSVDQVP--GVVHDSSSSGNTIFLEPQIV 240
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
+ L +++ + + ++K EE +L ++ + +++ + + + ++QL++ ARA Y G
Sbjct: 241 ISLGNQIVEIQTKISKEEERLLSIWSQLVAKNINSLNHLSSVLLQLELGLARARYGDWLG 300
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAY-HPLLLQQHKQKTQQAWKDL 402
G P I +D +P +L K + HPLLL WK+
Sbjct: 301 GVLPVITTKED-------DP--------------FLIKDFSHPLLL----------WKN- 328
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
K GG+ +PI +++ +V+ ITG
Sbjct: 329 ----------KKLGGHKV------------------------IPITFDVSKGLKVVAITG 354
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKTI LK+ GLAV+MA+ G+ + S +PW + V ADIGDEQSL Q+LSTFSGH
Sbjct: 355 PNTGGKTIALKSFGLAVLMARCGMLLPCSSEPTLPWCNQVLADIGDEQSLEQNLSTFSGH 414
Query: 523 LKQIG---NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579
+ +I ++I+QS ++VLLDE+GAGT+P EG+A+ +SLL A A+S LTIATTH G
Sbjct: 415 IARIVRILDVIAQSPGPTVVLLDEVGAGTDPTEGSAIAISLLRALADSAR-LTIATTHLG 473
Query: 580 ELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 639
ELK LKYS+ FENA + FD ++PTY +LWG+PGRS+A+ IA RLGL + + A++L
Sbjct: 474 ELKALKYSDSRFENASVAFDSETIRPTYHLLWGIPGRSNAVAIAIRLGLDSQITETAKKL 533
Query: 640 YGAAS-AEINEVIIEME 655
G ++N+VI+ +E
Sbjct: 534 IGPKGLQDVNQVILGLE 550
>gi|375363272|ref|YP_005131311.1| MutS2 protein [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|371569266|emb|CCF06116.1| MutS2 protein [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
Length = 785
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 206/639 (32%), Positives = 310/639 (48%), Gaps = 100/639 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA-----TLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
L LE+ K+ +++ A +SLGRE LT L I Q L ++E +A + ++
Sbjct: 6 LSSLEFHKVKEQITAHAASSLGREKLLQLKPLTDLADI----QKQLDEVEEASAVMRLRG 61
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
H L+ ++SA+R S L P E + LL + ++ + + + ED
Sbjct: 62 HAPFG------GLTDIRSALRRAEIGSVLTPAEFTELSGLLYAVKQMKHFI-SQMTEDG- 113
Query: 169 LYIRFMPLTQM-IMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
+PL Q +L L + I +D+ G + D ASPAL+ R Q++ LE ++
Sbjct: 114 ---VGIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQLRTLESRVRD 170
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSA 283
++ ++R+ + + + V+ + R I + S G ++ +SSSG IEP +
Sbjct: 171 RLESMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAI 230
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V +N+ LQQA+ + E +L LTE EI + + + LD + A+A Y+ +
Sbjct: 231 VDMNNSLQQAKVKEKQEIERILRMLTEHTAEHTQEIAQNVEVLQTLDFIFAKARYAKAIK 290
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
T P F+ D I L KA HPLL Q Q D+E
Sbjct: 291 ATKP--FMNGD--------------------GFIRLKKARHPLLPQD-----QVVANDIE 323
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
GG+ + +VITGP
Sbjct: 324 -----------LGGDYS------------------------------------TIVITGP 336
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT+GL +MA++GLHI + E ++ FD+VFADIGDEQS+ QSLSTFS H+
Sbjct: 337 NTGGKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDNVFADIGDEQSIEQSLSTFSSHM 396
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I NI+ + SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK
Sbjct: 397 VNIVNILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARV-LATTHYPELKA 455
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
Y+ NA +EFD L PTYK+L GVPGRS+A I+ RLGLP ++ A+ A
Sbjct: 456 YGYNRQGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAE 515
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
E++ +I +E+ K + E + E + LHK L
Sbjct: 516 HNEVDLMIASLEKSKKRADEELSETESLRKEAEKLHKEL 554
>gi|451345992|ref|YP_007444623.1| recombination and DNA strand exchange inhibitor protein [Bacillus
amyloliquefaciens IT-45]
gi|449849750|gb|AGF26742.1| recombination and DNA strand exchange inhibitor protein [Bacillus
amyloliquefaciens IT-45]
Length = 785
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 206/639 (32%), Positives = 310/639 (48%), Gaps = 100/639 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA-----TLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
L LE+ K+ +++ A +SLGRE LT L I Q L ++E +A + ++
Sbjct: 6 LSSLEFHKVKEQITAHAASSLGREKLLQLKPLTDLADI----QKQLDEVEEASAVMRLRG 61
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
H L+ ++SA+R S L P E + LL + ++ + + + ED
Sbjct: 62 HAPFG------GLTDIRSALRRAEIGSVLTPAEFTELSGLLYAVKQMKHFI-SQMTEDG- 113
Query: 169 LYIRFMPLTQM-IMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
+PL Q +L L + I +D+ G + D ASPAL+ R Q++ LE ++
Sbjct: 114 ---VGIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQLRTLESRVRD 170
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSA 283
++ ++R+ + + + V+ + R I + S G ++ +SSSG IEP +
Sbjct: 171 RLESMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAI 230
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V +N+ LQQA+ + E +L LTE EI + + + LD + A+A Y+ +
Sbjct: 231 VDMNNSLQQAKVKEKQEIERILRMLTEHTAEHTQEIAQNVEVLQTLDFIFAKARYAKAMK 290
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
T P F+ D I L KA HPLL Q Q D+E
Sbjct: 291 ATKP--FMNGD--------------------GFIRLKKARHPLLPQD-----QVVANDIE 323
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
GG+ + +VITGP
Sbjct: 324 -----------LGGDYS------------------------------------TIVITGP 336
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT+GL +MA++GLHI + E ++ FD+VFADIGDEQS+ QSLSTFS H+
Sbjct: 337 NTGGKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDNVFADIGDEQSIEQSLSTFSSHM 396
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I NI+ + SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK
Sbjct: 397 VNIVNILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARV-LATTHYPELKA 455
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
Y+ NA +EFD L PTYK+L GVPGRS+A I+ RLGLP ++ A+ A
Sbjct: 456 YGYNRQGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAE 515
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
E++ +I +E+ K + E + E + LHK L
Sbjct: 516 HNEVDLMIASLEKSKKRADEELSETESLRKEAEKLHKEL 554
>gi|374604257|ref|ZP_09677223.1| MutS2 family protein [Paenibacillus dendritiformis C454]
gi|374390142|gb|EHQ61498.1| MutS2 family protein [Paenibacillus dendritiformis C454]
Length = 785
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 238/795 (29%), Positives = 381/795 (47%), Gaps = 128/795 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA--IEMQKHGS 111
L +++ K+ S+++ A T LG +A L S + +D L T+ A +E K G
Sbjct: 6 LNTMDYHKILASLATHAATGLGEQAALNLRPSSD--LEDVKLRLQATDEAMTVERLKGGP 63
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L GV ++ A++ R + L E + ALL + + + A +E+A
Sbjct: 64 P---LAGV--KDIRGALKRARIQAMLSSTELWDISALLFAARRTKRHIAAVHEEEA---- 114
Query: 172 RFMPLTQMIMQLFVN-RSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+PL Q + + + + L + I Q +DE G I D AS L R ++++ E ++ + ++
Sbjct: 115 --IPLLQDLAETISDQKQLEEDIRQCIDEQGEILDQASFELAAIRRELRIGETRIREKLE 172
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPL 286
+IR+ N + E ++ + R I + S G ++ SG G+ IEP + V +
Sbjct: 173 AMIRSSNAAKMLQEQLITIRNDRYVIPVKQEYRSHYGGIVHDQSGSGATLFIEPEAIVAM 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N++L++ + + E +L LTE++ + D +E + LD + A+A
Sbjct: 233 NNKLRETKLREEREIERILSRLTEQVGLLADVLEYDTGAVETLDFMFAKAR--------- 283
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
L ++MK SL ++R + + L KA HPL+
Sbjct: 284 ----LAREMKASLPR--------MNDRGF-LKLRKARHPLI------------------- 311
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
P++ QV VPID+ + +++TGPNTG
Sbjct: 312 ------------------------PAD-QV--------VPIDVELGNSYTSILVTGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA SGL I + + +++ FD+++ADIGDEQS+ QSLSTFS HL I
Sbjct: 339 GKTVTLKTIGLLNLMAMSGLFIPAEDGSQMCVFDAIYADIGDEQSIEQSLSTFSSHLTNI 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ Q T +SLVLLDE+GAGT+P EG+AL +++LE G + +ATTH+ ELK Y
Sbjct: 399 IRILEQMTPKSLVLLDEVGAGTDPAEGSALAIAILEHIHRLGCRM-VATTHYSELKAYAY 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
NA MEFD L+PTY++L GVPGRS+A IAERLGLP ++ +AR E
Sbjct: 458 ERKGVINASMEFDVQTLRPTYRLLVGVPGRSNAFAIAERLGLPKPIIDHAR-------GE 510
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+ E + +E ++ +A + L L R+K+ Q + ++
Sbjct: 511 VTEEDMRVETMIASLEDNRLKAEAERETASKLRMELEAMRQKLSRELEKQEAEREKRQEQ 570
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A A AR++V K AR + +LR A + + +H+LT +
Sbjct: 571 AEAKARAIVDK-----------ARREAQEIIAELRQLAMEGVQV-----KEHMLTEARK- 613
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
+++ A + K + + V+R E GD V V S +KG+V VE + EE V
Sbjct: 614 ----RLDEAAPEAKLAAKPKRDAKPVRRIE---AGDDVRVYSLNQKGSV--VELAGEEAV 664
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G MK + D+
Sbjct: 665 VQLGIMKMKVPLDDL 679
>gi|73662960|ref|YP_301741.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus saprophyticus subsp. saprophyticus ATCC
15305]
gi|123642323|sp|Q49WR1.1|MUTS2_STAS1 RecName: Full=MutS2 protein
gi|72495475|dbj|BAE18796.1| MutS-like protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 782
Score = 262 bits (670), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 233/797 (29%), Positives = 383/797 (48%), Gaps = 126/797 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
+SL VLE+DK+ + + + LG+E + + + T + + DE + KH
Sbjct: 4 KSLNVLEFDKIKALIENETISDLGKEKVVDMAPATDFNTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ + + I + L +E + L+Q + + E+
Sbjct: 62 MPSL--SG--LAKISTYIHRAKIGGVLSVSELNVIKRLIQIQNQYKTFYNNLLNEEET-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I + L + QL V L +SI Q D + D+AS L+ R ++ +++ Q +D
Sbjct: 116 INYPILNDRMEQLPVLSDLYQSIHQKCDT-YDLYDNASYELQGIRSKISSTNQRIKQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++++ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 KIVKSQANQKKLSDAIVTVRNERNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSIVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDE--IEKMLNGIIQLDVVNARATYSLSFGG 344
++++ + + E +L ALT ++ + D I + + G Q+D + A+A Y+ S G
Sbjct: 235 SNQISRLKNDEAIERERILSALTVEVAEEADACLISESIMG--QIDFLTAKARYASSIKG 292
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
T P ++ T+YLPKA+HPLL KQ
Sbjct: 293 TKPQFT----------------------KDRTVYLPKAFHPLL---DKQTV--------V 319
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
ANT I A+ ++ITGPN
Sbjct: 320 ANT-----------------------------------------IEFAQDIETVIITGPN 338
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKT+GL ++MA+SG+ I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K
Sbjct: 339 TGGKTVTLKTLGLIIVMAQSGILIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMK 398
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I I+ +T SL+L DE+GAGT+P EG AL MS+L+ E GSL+ +ATTH+ ELK
Sbjct: 399 NIVEILQDTTKNSLILFDELGAGTDPSEGAALAMSILDHVHEIGSLV-MATTHYPELKAY 457
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL V+Q A+ + G
Sbjct: 458 SYNREGVMNASVEFDVNTLSPTYKLLMGVPGRSNAFDISKKLGLNMKVIQKAKSMIGQDE 517
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
EINE+I +E + E E + L +++ H L + + H + Q +
Sbjct: 518 QEINEMIASLESNSKRVDEQRIELDYLLREAQDTHDALAKQYEQYQNH-------EKQLM 570
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
++A + A Q SA++ + K ++LR + +H L
Sbjct: 571 NEAK--------EKANQRVKSATKEADDILKELRELRDQKGADV-------KEHELIDKK 615
Query: 765 QQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEE 824
+Q D+ E K +KQ+ + K+ + N GD V V ++G+KG V+++ E
Sbjct: 616 KQLD-DQYE---------AKSLKQNVQKKKWDEINAGDEVKVLTYGQKGEVLEL-IDNNE 664
Query: 825 IVVQVGNMKWIMKFTDI 841
VVQ+G +K + D+
Sbjct: 665 AVVQMGIIKMKLPLEDL 681
>gi|375084730|ref|ZP_09731589.1| MutS2 family protein [Megamonas funiformis YIT 11815]
gi|374567865|gb|EHR39064.1| MutS2 family protein [Megamonas funiformis YIT 11815]
Length = 789
Score = 262 bits (670), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 205/661 (31%), Positives = 315/661 (47%), Gaps = 118/661 (17%)
Query: 189 LIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VS 246
L + I +VDE GS++DSAS L + R +++ +R++ +D +++N + + F + V+
Sbjct: 128 LEREIDNIVDEHGSMRDSASVELMRIRREIKSSQRRIKTNLDGILKNPDYQKYFQDNIVT 187
Query: 247 SIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDV 304
R I + + F G++ SSSG IEP+S V LN++++Q + E +
Sbjct: 188 IRDERYVIPIKQEYRQQFPGVVHDQSSSGSTLFIEPMSIVDLNNDIKQLVIDEKREIERI 247
Query: 305 LLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPV 364
L ++EK+ + D + + QLD A+A + T P I
Sbjct: 248 LKVISEKIARNADSLLHNCEIMAQLDFAFAKAKLARKMHATMPEI--------------- 292
Query: 365 TSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGE 424
E + L KA HPLL
Sbjct: 293 -------NDEGIVNLAKARHPLL------------------------------------N 309
Query: 425 KDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKS 484
KD + VPIDI + R L+ITGPNTGGKT+ +KT+GL V+M +S
Sbjct: 310 KD----------------NVVPIDIRLGEGYRTLLITGPNTGGKTVSMKTLGLLVLMTQS 353
Query: 485 GLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEI 544
GL I +K+ F +V+ADIGDEQS+ QSLSTFS H++ I NI++ L+LLDE+
Sbjct: 354 GLFIPVQSGSKISIFQNVYADIGDEQSIEQSLSTFSAHMRNIVNILNNIEHDDLLLLDEV 413
Query: 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLK 604
G+GT+P EG AL MS+LE + G+ T+ATTH+ ELKT YS + ENAC+EFD L+
Sbjct: 414 GSGTDPEEGAALAMSILERLMDIGA-CTVATTHYNELKTFAYSKEGIENACVEFDIKSLR 472
Query: 605 PTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEH 664
PTY++L G PG S+A I++RLGL ++ A+QL A A+ V+ +E K +
Sbjct: 473 PTYRLLIGTPGASNAFAISKRLGLSDTLILRAQQLIKADHAQFENVLNTLENEKLMY--- 529
Query: 665 VHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCP 724
E ++ + R QR K++K A + + + K Q L
Sbjct: 530 --EQKNADIAER------------------QQRIEKLEK--QLADMKQEMAKKKEQTLRK 567
Query: 725 SASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVK 784
+ Q SL+ + R + + + K N + +Q T+D H V
Sbjct: 568 TKEQCASLLRR----TRRESEEIIKELKAQFNDQGMKK--RQETIDAARHKLRGRLDKVS 621
Query: 785 DIKQSPRVKRTELPN-----VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFT 839
P K E + VGD+V+V+ +KGT+ + S +E+ VQ+G++K +K
Sbjct: 622 QQNDDPN-KPGEAVDIKTIAVGDIVYVNKLRQKGTITDI--SGKELTVQLGSLKMNVKAK 678
Query: 840 D 840
D
Sbjct: 679 D 679
>gi|418576544|ref|ZP_13140678.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus saprophyticus subsp. saprophyticus KACC
16562]
gi|379324965|gb|EHY92109.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus saprophyticus subsp. saprophyticus KACC
16562]
Length = 782
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 233/797 (29%), Positives = 383/797 (48%), Gaps = 126/797 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
+SL VLE+DK+ + + + LG+E + + + T + + DE + KH
Sbjct: 4 KSLNVLEFDKIKALIENETISDLGKEKVVDMAPATDFNTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ + + I + L +E + L+Q + + E+
Sbjct: 62 MPSL--SG--LAKISTYIHRAKIGGVLSVSELNVIKRLIQIQNQYKTFYNNLLNEEET-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I + L + QL V L +SI Q D + D+AS L+ R ++ +++ Q +D
Sbjct: 116 INYPILNDRMEQLPVLSDLYQSIHQKCDT-YDLYDNASYELQGIRSKISSTNQRIKQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++++ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 KIVKSQANQKKLSDAIVTVRNERNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSIVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDE--IEKMLNGIIQLDVVNARATYSLSFGG 344
++++ + + E +L ALT ++ + D I + + G Q+D + A+A Y+ S G
Sbjct: 235 SNQISRLKNDEAIERERILSALTVEVAEEADACLISESIMG--QIDFLTAKARYASSIKG 292
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
T P ++ T+YLPKA+HPLL KQ
Sbjct: 293 TKPQFT----------------------KDRTVYLPKAFHPLL---DKQTV--------V 319
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
ANT I A+ ++ITGPN
Sbjct: 320 ANT-----------------------------------------IEFAQDIETVIITGPN 338
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKT+GL ++MA+SG+ I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K
Sbjct: 339 TGGKTVTLKTLGLIIVMAQSGILIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMK 398
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I I+ +T SL+L DE+GAGT+P EG AL MS+L+ E GSL+ +ATTH+ ELK
Sbjct: 399 NIVEILHDTTKNSLILFDELGAGTDPSEGAALAMSILDHVHEIGSLV-MATTHYPELKAY 457
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL V+Q A+ + G
Sbjct: 458 SYNREGVMNASVEFDVNTLSPTYKLLMGVPGRSNAFDISKKLGLNMKVIQKAKSMIGQDE 517
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
EINE+I +E + E E + L +++ H L + + H + Q +
Sbjct: 518 QEINEMIASLESNSKRVDEQRIELDYLLREAQDTHDALAKQYEQYQNH-------EKQLM 570
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
++A + A Q SA++ + K ++LR + +H L
Sbjct: 571 NEAK--------EKANQRVKSATKEADDILKELRELRDQKGADV-------KEHELIDKK 615
Query: 765 QQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEE 824
+Q D+ E K +KQ+ + K+ + N GD V V ++G+KG V+++ E
Sbjct: 616 KQLD-DQYE---------AKSLKQNVQKKKWDEINAGDEVKVLTYGQKGEVLEL-IDHNE 664
Query: 825 IVVQVGNMKWIMKFTDI 841
VVQ+G +K + D+
Sbjct: 665 AVVQMGIIKMKLPLEDL 681
>gi|421730736|ref|ZP_16169862.1| recombination and DNA strand exchange inhibitor protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|407074890|gb|EKE47877.1| recombination and DNA strand exchange inhibitor protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
Length = 785
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 206/639 (32%), Positives = 311/639 (48%), Gaps = 100/639 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA-----TLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
L LE+ K+ +++ A +SLGRE LT L I Q L ++E +A + ++
Sbjct: 6 LSSLEFHKVKEQITAHAASSLGREKLLQLKPLTDLADI----QKQLDEVEEASAVMRLRG 61
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
H L+ ++SA+R S L P E + LL + ++ + + + ED
Sbjct: 62 HAPFG------GLTDIRSALRRAEIGSVLTPAEFTELSGLLYAVKQMKHFI-SQMTEDG- 113
Query: 169 LYIRFMPLTQMI-MQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
+PL Q +L +L + I +D+ G + D ASPAL+ R Q++ LE ++
Sbjct: 114 ---VGIPLIQAHGEELITLGNLEREINSCIDDHGEVLDHASPALRGIRTQLRTLESRVRD 170
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSA 283
++ ++R+ + + + V+ + R I + S G ++ +SSSG IEP +
Sbjct: 171 RLESMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAI 230
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V +N+ LQQA+ + E +L LTE EI + + + LD + A+A Y+ +
Sbjct: 231 VDMNNSLQQAKVKEKQEIERILRMLTEHTAEHTQEIAQNVEVLQTLDFIFAKARYAKAMK 290
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
T P F+ D I L KA HPLL Q Q D+E
Sbjct: 291 ATKP--FMNGD--------------------GFIRLKKARHPLLPQD-----QVVANDIE 323
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
GG+ + +VITGP
Sbjct: 324 -----------LGGDYS------------------------------------TIVITGP 336
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT+GL +MA++GLHI + E ++ FD+VFADIGDEQS+ QSLSTFS H+
Sbjct: 337 NTGGKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDNVFADIGDEQSIEQSLSTFSSHM 396
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I NI+ + SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK
Sbjct: 397 VNIVNILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARV-LATTHYPELKA 455
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
Y+ NA +EFD L PTYK+L GVPGRS+A I+ RLGLP ++ A+ A
Sbjct: 456 YGYNRQGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAE 515
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
E++ +I +E+ K + E + E + LHK L
Sbjct: 516 HNEVDLMIASLEKSKKRADEELSETESLRKEAEKLHKEL 554
>gi|399046291|ref|ZP_10738749.1| MutS2 family protein [Brevibacillus sp. CF112]
gi|433543508|ref|ZP_20499913.1| DNA mismatch repair protein [Brevibacillus agri BAB-2500]
gi|398055652|gb|EJL47713.1| MutS2 family protein [Brevibacillus sp. CF112]
gi|432185182|gb|ELK42678.1| DNA mismatch repair protein [Brevibacillus agri BAB-2500]
Length = 785
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 241/804 (29%), Positives = 392/804 (48%), Gaps = 144/804 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGRE--ATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L+ LE+DK+ + A + G+E A LT LDE A + + +
Sbjct: 6 LKTLEYDKIIALLVDKASCTYGKEKAAELTPFVR-----------LDEVKIAQQGTEEAA 54
Query: 112 CSLDLTGVDLSLVKSAIREVRRA-SPLRPNEALAVVALLQFSETLQLSLRAA-----IKE 165
L L G S IR++R + R N LA + LL + T+ R + E
Sbjct: 55 TVLRLKG---SAPLGGIRDIRGSVQRARLNAMLAPMELLDIASTVMAGRRLKTFLLDMCE 111
Query: 166 DADLYIRFMPLT-QMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
D + MPL Q ++ R L I + +DE+G + DSAS L+Q R +++ +E +
Sbjct: 112 DHE-----MPLIKQQAERIEGLRELEMEIRRCIDENGDVMDSASMELRQVRQEIRQVESR 166
Query: 225 LYQLMDMLIRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEP 280
+ + +D + R+ + + + +E + +I G R I + + F G++ S+SG IEP
Sbjct: 167 IREKLDQMTRSSSYQKMLMENIVTIRGDRFVIPVKQEYRHVFGGIVHDQSASGATLFIEP 226
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
V +N++L++ R + E +L LTE++ +D + + ++ + +LD + A+A +
Sbjct: 227 EVIVSMNNKLRELRLREEREVERILYLLTEQVAFAVDALVENVDALTELDFMFAKAQLAW 286
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
S P + ++R + + + KA HPL+
Sbjct: 287 SMKAVCPKL---------------------NDRGY-LNMKKARHPLI------------- 311
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
P E+ V P+D+ + + + +V+
Sbjct: 312 ------------------------------PREVVV---------PVDVELGGEYQAIVV 332
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT+ LKT+GL +MA +GLHI + E +++ F SVFADIGDEQS+ QSLSTFS
Sbjct: 333 TGPNTGGKTVSLKTIGLLSLMAMAGLHIPAEEESEMTVFSSVFADIGDEQSIEQSLSTFS 392
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H+K I +I+ + ++SLVL DE+GAGT+P EG AL MS+++ +SG+ L +ATTH+ E
Sbjct: 393 SHMKNIISILEKMDAKSLVLFDELGAGTDPTEGAALAMSIIDHVIDSGARL-VATTHYSE 451
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK Y NA +EFD L+PTY++L GVPGRS+A IA RLGLP +++ AR
Sbjct: 452 LKAYAYDRPEVINASVEFDVQTLRPTYRLLVGVPGRSNAFAIARRLGLPEAIIEVAR--- 508
Query: 641 GAASAEINEV---IIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
G+ S E N+V I +ER + + R +R + L R + A ++
Sbjct: 509 GSISEEDNQVESMIASLERNR----KSAEADRLAAAAARKEAEELRRQLEEERARFAEEK 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
+ +++ D A IA L + A+ + R L R + + + + K
Sbjct: 565 NKLMERAEDEARIAVQLAKEEAETII------RELREMRDEGVEIKEHRLIDAKK----- 613
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L + + +KV+ PA A V+ T++ VGD V V+SFG+KGTV++
Sbjct: 614 -RLGNAVLELEKEKVKKPAKA-------------VRATQI-KVGDEVMVTSFGQKGTVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + +E +VQ+G MK ++ D+
Sbjct: 659 -KVNNDEFLVQIGIMKMKVRREDM 681
>gi|317129869|ref|YP_004096151.1| MutS2 family protein [Bacillus cellulosilyticus DSM 2522]
gi|315474817|gb|ADU31420.1| MutS2 family protein [Bacillus cellulosilyticus DSM 2522]
Length = 788
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 235/804 (29%), Positives = 372/804 (46%), Gaps = 142/804 (17%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSL 114
R+LE+DK+ + + A +SLG++ S+N E A + G+ L
Sbjct: 7 RILEYDKMKSQLVNHASSSLGKQRVEHLQPSLN---------FSEIEHAQKSTYEGAKVL 57
Query: 115 DLTG-VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR------AAIKEDA 167
L G L ++ V+RA + AL + LL S T+ S R A I+++
Sbjct: 58 RLKGQAPLGGIRDIRASVKRA---KIGGALNEIELLDVSSTIYGSRRFKSFVEAMIEDEV 114
Query: 168 DLYI------RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQML 221
+L I +PLT + + I Q +DE+G + DSASPAL+ R Q++
Sbjct: 115 ELTIIPELAENIVPLT----------DVERDIKQAIDENGEVLDSASPALRTLRQQIRSY 164
Query: 222 ERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSV 277
E + ++ + R+ + + + ++ + R I + F G++ S+SG
Sbjct: 165 ESSVRSKLESITRSSSGRKMLSDGIITIRNDRYVIPVKQEYRGHFGGMVHDQSASGATLF 224
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
IEP S V +N++L++AR + +LLAL+ + +E+ ++ + ++D + A+A
Sbjct: 225 IEPSSVVEINNQLREARMKEKQEISRILLALSVLVSEVAEELLTIVEVMSEIDFIFAKAL 284
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
YSL GGT P + + I++ KA HPL+
Sbjct: 285 YSLEIGGTQPKL----------------------NEDGYIHMAKARHPLI---------- 312
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
A E+ VPIDI I ++
Sbjct: 313 -------AKDEI-----------------------------------VPIDIEIGKEYSS 330
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
LVITGPNTGGKT+ LKTVGL +M +SGL I E + F +FADIGDEQS+ QSLS
Sbjct: 331 LVITGPNTGGKTVTLKTVGLLTLMVQSGLQIPCEEGSSAAVFQHIFADIGDEQSIEQSLS 390
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I +I+ +SLVL DE+GAGT+P EG AL +S+L+ G+ + IATTH
Sbjct: 391 TFSSHMTNIVDILKHVDHRSLVLFDELGAGTDPTEGAALAISILDYVYNVGAKV-IATTH 449
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L+PTY++L GVPGRS+A I+ RLGL ++++A+
Sbjct: 450 YSELKGYAYNREGVMNASVEFDVETLRPTYRLLIGVPGRSNAFAISRRLGLSDTIIEDAK 509
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
A + +I +I +E + + E+ LLR + L +
Sbjct: 510 SHITADTNKIENMIASLESSRKNAEREMEES------------ELLRKEAEQLHQQLEKE 557
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F K+Q + I + K+ Q L + ++A ++ + + R + H K +
Sbjct: 558 FEKLQ--MEREKILQQAEEKAEQSLNKATAEAEKIISELREIQRSNPQIKDHQLIEAKKR 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
+ V+K + +SS K K P GD V V SF +KG +++
Sbjct: 616 ---LEEAKPHLVNKKSNEKPKTSSNSKKKKLIP----------GDEVKVLSFDQKGHIVE 662
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + +E VQ+G MK +K DI
Sbjct: 663 -QVNDKEYFVQLGMMKMKVKADDI 685
>gi|435854741|ref|YP_007316060.1| MutS2 family protein [Halobacteroides halobius DSM 5150]
gi|433671152|gb|AGB41967.1| MutS2 family protein [Halobacteroides halobius DSM 5150]
Length = 788
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 207/725 (28%), Positives = 352/725 (48%), Gaps = 121/725 (16%)
Query: 124 VKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQL 183
++SA+++V + + L +E L ++ + + L+ S ++++ + Y+R + ++ I +
Sbjct: 71 IRSALKKVEKGAILGADELLDILITITSGKKLR-SYFLGLEDEDNEYVRILKISSQI-ET 128
Query: 184 FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFL 243
F N L + I + VD G IKDSAS L R +++ ++ ++ ++ + +S
Sbjct: 129 FSN--LEQKIRKAVDNQGQIKDSASSKLADLRRKIRNTSDRIKNKLNSILNSNRYQSYIQ 186
Query: 244 E--VSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTK 299
E V+ R I A Q F G++ S+SG IEP+ V +N++LQQ R+ +
Sbjct: 187 ESVVTIRDQRYVIPVKAAKQSDFPGIIHDKSASGQTVFIEPMPVVEINNKLQQLRSEEEE 246
Query: 300 AEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSL 359
+ +L L+ +++ L I++ + + LD + A+A YS+ + P
Sbjct: 247 EIKRILQELSIEVEKRLQPIKETIKVLAVLDFIFAKAKYSIELEASEP------------ 294
Query: 360 THEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNA 419
+ SK I L KA HPLL +
Sbjct: 295 ---ILNSK-------GQINLIKARHPLLTE------------------------------ 314
Query: 420 ARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAV 479
++ P ++Q+ D F + LVITGPNTGGKT+ LKT+GL
Sbjct: 315 --------DVVPIDVQLG----------DNFAS-----LVITGPNTGGKTVSLKTIGLLT 351
Query: 480 MMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLV 539
+M ++GLH+ + +K+ F+ V+ADIGDEQS+ Q+LSTFS H+ QI I+ +++ SLV
Sbjct: 352 IMGQAGLHVPALSGSKLAIFNQVYADIGDEQSIEQNLSTFSSHMTQIIKIVERASINSLV 411
Query: 540 LLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599
LLDE+GAGT+P+EG+AL +L+ + G+ T+ATTH+ ELKT Y+ D ENA +EFD
Sbjct: 412 LLDELGAGTDPVEGSALARGILDYLHQQGA-KTVATTHYSELKTYAYNQDGVENASVEFD 470
Query: 600 EVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKT 659
L PTY + G+PGRS+A IA RLGL ++ A Q E++ +I ++E K
Sbjct: 471 VETLAPTYNLQMGLPGRSNAFQIASRLGLSDEIIDKASQFLDQEDIELDNIIKQIEEDKR 530
Query: 660 QFLEHVHEARHFLMLSRNLHKNLLRTRRKI---LEHCASQRFRKVQKISDAAAIARSLVH 716
++ + A+ +R L + +K+ E + +R+ KI I R+
Sbjct: 531 EYQQKKESAQENKRQARELREEYEAKLKKLEAQKEREMKEAYREANKI-----IKRA--Q 583
Query: 717 KSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPA 776
+ A ++ + R L ++ + R + K + Q ++ + +Q
Sbjct: 584 QKANKIIDELKEQRQLNDRKIEGARSELREERKDLK-EERQELIEAKREQ---------- 632
Query: 777 TASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIM 836
K+ P +K VGD V +S+ +KG V+++ KEE +VQ G MK +
Sbjct: 633 ----------KEVPDIK------VGDKVKLSNLNQKGKVLEIHSGKEEALVQAGIMKVTV 676
Query: 837 KFTDI 841
++
Sbjct: 677 DLREL 681
>gi|70726818|ref|YP_253732.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus haemolyticus JCSC1435]
gi|82592981|sp|Q4L5E9.1|MUTS2_STAHJ RecName: Full=MutS2 protein
gi|68447542|dbj|BAE05126.1| MutS-like protein [Staphylococcus haemolyticus JCSC1435]
Length = 783
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 235/795 (29%), Positives = 373/795 (46%), Gaps = 121/795 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE+DK+ V+S + LGRE + + +T + + DE + KH
Sbjct: 4 KTLDVLEFDKIKSFVASETISDLGREKVSKMSPATDFETVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ + I L E V L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKISPLIHRANIGGVLNVTELNLVKRLIQVQNQFKTFYNQLLEEDEQV- 116
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + QL + L + I + D + DSAS L+ R ++ +++ Q +D
Sbjct: 117 VKYPILNDKMNQLPILSDLFQEINEKCDTH-DLYDSASYELQGIRSKISSTNQRIRQNLD 175
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++++ N+ + ++ + R I A+ + FKG++ S+SG IEP S V +
Sbjct: 176 RIVKSQANQKKLSDAIITVRNDRNVIPVKAEYRQDFKGIVHDQSASGQTLYIEPSSIVEM 235
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + Q+D + A+A Y+ S GT
Sbjct: 236 NNQISRLRNDEAVERERILTELTGMVAAEADGCLIAESVMGQIDFLTAKARYARSIKGTK 295
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + ++ T+YLP AYHPLL KD AN
Sbjct: 296 PTFY----------------------KDRTVYLPNAYHPLL-----------NKDTVVAN 322
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T I ++ITGPNTG
Sbjct: 323 T-----------------------------------------IEFVDDIETVIITGPNTG 341
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 342 GKTVTLKTLGLIIIMAQSGLLIPTLDGSQLSVFENVYCDIGDEQSIEQSLSTFSSHMKNI 401
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ ++ SLVL DE+GAGT+P EG AL MS+L+ E GSL+ +ATTH+ ELK Y
Sbjct: 402 VEILQETDKNSLVLFDELGAGTDPSEGAALAMSILDHVREIGSLV-MATTHYPELKAYSY 460
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+ +LGL ++ A+ + G E
Sbjct: 461 NREGVMNASVEFDVNTLSPTYKLLMGVPGRSNAFDISRKLGLSLGIINKAKTMIGTDEQE 520
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E+ + E E L +R H + LEH Q +K+ D
Sbjct: 521 INSMIESLEKNSKRVDEQRIELDRLLKEARKTHDD--------LEHQYEQYKSYEKKLMD 572
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A + A Q SA++ + K + LR + +H L +Q
Sbjct: 573 EAK-------EKANQRVKSATKEADSILKELRTLRDQKGADV-------KEHELIDKKKQ 618
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
D+ E K +KQ+ + ++ + + GD V V S+G+KG V S+EE V
Sbjct: 619 LD-DQYE---------AKSLKQNVQKQKYDEIHAGDEVKVLSYGQKGEV-LELVSEEEAV 667
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K + D+
Sbjct: 668 VQMGIIKMKLPIEDL 682
>gi|242373376|ref|ZP_04818950.1| MutS family DNA mismatch repair protein [Staphylococcus epidermidis
M23864:W1]
gi|242348739|gb|EES40341.1| MutS family DNA mismatch repair protein [Staphylococcus epidermidis
M23864:W1]
Length = 782
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 228/796 (28%), Positives = 383/796 (48%), Gaps = 124/796 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL-LDETNAAIEM-QKH 109
++L VLE+DK+ V+ + LGRE + Q+ T D++ ++ET+ ++ KH
Sbjct: 4 KTLDVLEFDKIKSFVAEETISDLGREK-VEQMAPA--TDFDTVEFQINETDEISQIYNKH 60
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
SL +G L+ V I L E + L+Q + ++ED +
Sbjct: 61 RLPSL--SG--LAKVSPLIHRANIGGVLNVTELNVIKRLIQVQNQFKTFYNQLLEEDEE- 115
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+++ L + + QL V L + I D + D AS AL+ R ++ +++ Q +
Sbjct: 116 -VKYPILDEKMNQLPVLSDLFQEIKDKCDT-YDLFDHASYALQGIRSKISSTNQRIRQNL 173
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
D ++++++N+ + V+ + R I A+ + F G++ S+SG IEP S V
Sbjct: 174 DRIVKSQSNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSVVE 233
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
+N+++ + R E +L LT ++ + D + + + Q+D + A+A Y+ S GT
Sbjct: 234 MNNQISRLRNDEAVERERILTELTGQVAAEADALLIAESVMGQIDFLTAKARYARSIKGT 293
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
P ++E T+YLP A+HPLL K+ A
Sbjct: 294 KPTF----------------------KKERTVYLPNAFHPLL-----------NKETVVA 320
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
NT +E V ++ITGPNT
Sbjct: 321 NT-------------------------------IEFIDDV----------ETVIITGPNT 339
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKT+GL ++MA+SGL + + + +++ F++V+ DIGDEQS+ QSLSTFS H+K
Sbjct: 340 GGKTVTLKTLGLIIVMAQSGLLVPTLDGSQLSVFENVYCDIGDEQSIEQSLSTFSSHMKN 399
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I I+ ++ SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK
Sbjct: 400 IVEILHEADKNSLILFDELGAGTDPSEGAALAMSILDYVRNLGSLV-MATTHYPELKAYS 458
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G
Sbjct: 459 YNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQ 518
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKIS 705
EIN +I +ER + E E + ++ H L + ++ Q + K +
Sbjct: 519 EINSMIESLERNSKRVDEQRIELDRLVREAQETHDALSK------QYQQYQNYEK--SLM 570
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQ 765
D A + A Q SA++ + K + LR + + ++ + L ++
Sbjct: 571 DEAK-------EKANQRVKSATKEADSILKELRDLRDNKGVEVKEHELIDKKKQLDEQYE 623
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEI 825
+ K IKQ+ + K+ + N GD V V S+G+KG V+++ ++E
Sbjct: 624 E-----------------KSIKQNVQKKKYDKINAGDEVKVLSYGQKGEVLEL-VGEDEA 665
Query: 826 VVQVGNMKWIMKFTDI 841
VVQ+G +K + D+
Sbjct: 666 VVQMGIIKMKLPIEDL 681
>gi|154686993|ref|YP_001422154.1| recombination and DNA strand exchange inhibitor protein [Bacillus
amyloliquefaciens FZB42]
gi|189030421|sp|A7Z7E7.1|MUTS2_BACA2 RecName: Full=MutS2 protein
gi|154352844|gb|ABS74923.1| MutSB [Bacillus amyloliquefaciens FZB42]
Length = 785
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 203/636 (31%), Positives = 310/636 (48%), Gaps = 94/636 (14%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ--TYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ +++ A +SLGRE L QL + Q L ++E +A + ++ H
Sbjct: 6 LSSLEFHKVKEQITAHAASSLGRE-KLLQLKPLTDLSDIQKQLDEVEEASAVMRLRGHAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++SA+R S L P E + LL + ++ + + + ED
Sbjct: 65 FG------GLTDIRSALRRAEIGSVLTPAEFTELSGLLYAVKQMKHFI-SQMTEDG---- 113
Query: 172 RFMPLTQM-IMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+PL Q +L L + I +D+ G + D ASPAL+ R Q++ LE ++ ++
Sbjct: 114 VGIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQLRTLESRVRDRLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +
Sbjct: 174 SMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ LQQA+ + E +L LTE EI + + + LD + A+A Y+ + T
Sbjct: 234 NNSLQQAKVKEKQEIERILRMLTEHTAEHTQEIAQDVEVLQTLDFIFAKARYAKAMKATK 293
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + I L KA HPLL Q Q D+E
Sbjct: 294 PLM----------------------NGDGFIRLKKARHPLLPQD-----QVVANDIE--- 323
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
GG+ + +VITGPNTG
Sbjct: 324 --------LGGDYS------------------------------------TIVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA++GLHI + E ++ FD+VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDNVFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
NI+ + SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y
Sbjct: 400 VNILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARV-LATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA +EFD L PTYK+L GVPGRS+A I+ RLGLP ++ A+ A E
Sbjct: 459 NRQGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAEHNE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
++ +I +E+ K + E + E + LHK+L
Sbjct: 519 VDLMIASLEKSKKRADEELSETESIRKEAEKLHKDL 554
>gi|223043809|ref|ZP_03613852.1| MutS2 family protein [Staphylococcus capitis SK14]
gi|417907533|ref|ZP_12551304.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus capitis VCU116]
gi|222442906|gb|EEE49008.1| MutS2 family protein [Staphylococcus capitis SK14]
gi|341595562|gb|EGS38205.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus capitis VCU116]
Length = 782
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 230/795 (28%), Positives = 378/795 (47%), Gaps = 122/795 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE+DK+ V+ + LGRE + +T + + DE + KH
Sbjct: 4 KTLDVLEFDKIKSFVADETISDLGREKVDAMTPATEFETVEFQINETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V I L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLIHRANIGGVLNVTELNVIKRLIQVQNQFKTFYNQLLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + + QL V L + I D + D AS AL+ R ++ +++ Q +D
Sbjct: 116 VKYPILDEKMSQLPVLTDLFQEIKDKCDT-YDLYDHASYALQGIRSKISSTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
++++++N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKSQSNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT ++ V+ D I + + Q+D + A+A Y+ S GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGQVAVEADSILIAESVMGQIDFLIAKARYARSIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P ++E T+YLP A+HPLL
Sbjct: 295 PTF----------------------KKERTVYLPNAFHPLL------------------- 313
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
+K+T +S + +E V ++ITGPNTG
Sbjct: 314 -----------------DKETVVS------NTIEFIDDV----------ETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ ++ SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILHEADKNSLILFDELGAGTDPSEGAALAMSILDYVRNLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EF+ L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFNVDTLSPTYKLLMGVPGRSNAFDISKKLGLGLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +ER + E E + ++ H L + ++ + S +K
Sbjct: 520 INSMIESLERNSKRVDEQRIELDRLVREAQETHDALAKQYQQYQNYEQSLMNEAKEK--- 576
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A Q SA++ + K + LR + + +H L +Q
Sbjct: 577 ------------ANQRVKSATKEADTILKELRDLRDNKGAEV-------KEHELIDKKKQ 617
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
D+ E K IKQS + K+ + N GD V V S+G+KG V+++ ++E V
Sbjct: 618 LD-DQYE---------AKSIKQSVQKKKYDKINAGDEVKVLSYGQKGEVLEL-VGEDEAV 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K + D+
Sbjct: 667 VQMGIIKMKLPIEDL 681
>gi|429506149|ref|YP_007187333.1| recombination and DNA strand exchange inhibitor protein [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
gi|429487739|gb|AFZ91663.1| recombination and DNA strand exchange inhibitor protein [Bacillus
amyloliquefaciens subsp. plantarum AS43.3]
Length = 785
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 203/636 (31%), Positives = 309/636 (48%), Gaps = 94/636 (14%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ--TYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ +++ A +SLGRE L QL + Q L ++E +A + ++ H
Sbjct: 6 LSSLEFHKVKEQITAHAASSLGRE-KLLQLKPLTDLSDIQKQLDEVEEASAVMRLRGHAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++SA+R S L P E + LL + ++ + + + ED
Sbjct: 65 FG------GLTDIRSALRRAEIGSVLTPAEFTELSGLLYAVKQMKHFI-SQMTEDG---- 113
Query: 172 RFMPLTQM-IMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+PL Q +L L + I +D+ G + D ASPAL+ R Q++ LE ++ ++
Sbjct: 114 VGIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQLRTLESRVRDRLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +
Sbjct: 174 SMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ LQQA+ + E +L LTE EI + + + LD + A+A Y+ + T
Sbjct: 234 NNSLQQAKVKEKQEIERILRMLTEHTAEHTQEIAQNVEVLQTLDFIFAKARYAKAMKATK 293
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + I L KA HPLL Q Q D+E
Sbjct: 294 PLM----------------------NGDGFIRLKKARHPLLPQD-----QVVANDIE--- 323
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
GG+ + +VITGPNTG
Sbjct: 324 --------LGGDYS------------------------------------TIVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA++GLHI + E ++ FD+VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDNVFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
NI+ + SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y
Sbjct: 400 VNILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARV-LATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA +EFD L PTYK+L GVPGRS+A I+ RLGLP ++ A+ A E
Sbjct: 459 NRQGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAEHNE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
++ +I +E+ K + E + E + LHK L
Sbjct: 519 VDLMIASLEKSKKRADEELSETESIRKEAEKLHKEL 554
>gi|338814182|ref|ZP_08626216.1| MutS2 family protein [Acetonema longum DSM 6540]
gi|337273787|gb|EGO62390.1| MutS2 family protein [Acetonema longum DSM 6540]
Length = 786
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 167/480 (34%), Positives = 253/480 (52%), Gaps = 79/480 (16%)
Query: 187 RSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEV- 245
R+L ++I + E G I+D ASP L + R +++ +++ + +D ++ + + F +V
Sbjct: 127 RNLEQAIENAISEQGQIRDDASPELSRLRREIRTTRQRIREKVDSILHSSEYQKYFQDVL 186
Query: 246 SSIHG-RLCIRTGADQL-SFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEE 302
++ G R CI + F G++ S+SG IEP++ V LN++L+QA A+ E
Sbjct: 187 VTVRGDRYCIPVKQEHRHQFPGIIHDQSASGATVFIEPMAVVQLNNDLKQAMAAEKNEIE 246
Query: 303 DVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHE 362
+L L+ ++ + + + +D A+A +L D+K HE
Sbjct: 247 RILTLLSLQVAKSASLLTQSCETMAHIDFAFAKARLAL-------------DLK---AHE 290
Query: 363 PVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARK 422
P+ ++ E L +A HPL+
Sbjct: 291 PLFNQTGQVE------LRQARHPLI----------------------------------- 309
Query: 423 GEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMA 482
PSE VPID+ I +LVITGPNTGGKT+ LKTVG+ +MA
Sbjct: 310 --------PSE---------DVVPIDVRIGNDFHILVITGPNTGGKTVALKTVGIFALMA 352
Query: 483 KSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLD 542
++GL I ++ ++ F ++FADIGDEQS+ QSLSTFS H+ + I++Q T + LVLLD
Sbjct: 353 QAGLFIPAANECQLTVFHNIFADIGDEQSIEQSLSTFSAHMTNLVRILNQVTGKDLVLLD 412
Query: 543 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 602
EIG GT+P EG AL M++LE G+ TIATTH+ ELKT YS ENAC+EFD+
Sbjct: 413 EIGIGTDPDEGAALAMAILEYLHSIGA-RTIATTHYSELKTFAYSRSGIENACVEFDQQT 471
Query: 603 LKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFL 662
L+PTY++L GVPG S+A I++RLGLP ++ ARQL E+ V+ +E KT ++
Sbjct: 472 LRPTYRLLIGVPGSSNAFQISKRLGLPVKIIDRARQLLDKGHVEMESVLSSLEEEKTSYI 531
>gi|452856510|ref|YP_007498193.1| putative DNA mismatch repair enzyme [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452080770|emb|CCP22535.1| putative DNA mismatch repair enzyme [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 785
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 203/636 (31%), Positives = 309/636 (48%), Gaps = 94/636 (14%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ--TYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ +++ A +SLGRE L QL + Q L ++E +A + ++ H
Sbjct: 6 LSSLEFHKVKEQITAHAASSLGRE-KLLQLKPLTDLSDIQKQLDEVEEASAVMRLRGHAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++SA+R S L P E + LL + ++ + + + ED
Sbjct: 65 FG------GLTDIRSALRRAEIGSVLTPAEFTELSGLLYAVKQMKHFI-SQMTEDG---- 113
Query: 172 RFMPLTQM-IMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+PL Q +L L + I +D+ G + D ASPAL+ R Q++ LE ++ ++
Sbjct: 114 VGIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQLRTLESRVRDRLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +
Sbjct: 174 SMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ LQQA+ + E +L LTE EI + + + LD + A+A Y+ + T
Sbjct: 234 NNSLQQAKVKEKQEIERILRMLTEHTAEHTQEIAQNVEVLQTLDFIFAKARYAKAMKATK 293
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + I L KA HPLL Q Q D+E
Sbjct: 294 PLM----------------------NGDGFIRLKKARHPLLPQD-----QVVANDIE--- 323
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
GG+ + +VITGPNTG
Sbjct: 324 --------LGGDYS------------------------------------TIVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA++GLHI + E ++ FD+VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDNVFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
NI+ + SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y
Sbjct: 400 VNILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARV-LATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA +EFD L PTYK+L GVPGRS+A I+ RLGLP ++ A+ A E
Sbjct: 459 NRQGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAEHNE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
++ +I +E+ K + E + E + LHK L
Sbjct: 519 VDLMIASLEKSKKRADEELSETESIRKEAEKLHKEL 554
>gi|394991851|ref|ZP_10384649.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. 916]
gi|393807396|gb|EJD68717.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. 916]
Length = 785
Score = 259 bits (663), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 203/636 (31%), Positives = 309/636 (48%), Gaps = 94/636 (14%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ--TYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ +++ A +SLGRE L QL + Q L ++E +A + ++ H
Sbjct: 6 LSSLEFHKVKEQITAHAASSLGRE-KLLQLKPLTDLSDIQKQLDEVEEASAVMRLRGHAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++SA+R S L P E + LL + ++ + + + ED
Sbjct: 65 FG------GLTDIRSALRRAEIGSVLTPAEFTELSGLLYAVKQMKHFI-SQMTEDG---- 113
Query: 172 RFMPLTQM-IMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+PL Q +L L + I +D+ G + D ASPAL+ R Q++ LE ++ ++
Sbjct: 114 VSIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQLRTLESRVRDRLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +
Sbjct: 174 SMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ LQQA+ + E +L LTE EI + + + LD + A+A Y+ + T
Sbjct: 234 NNSLQQAKVKEKQEIERILRMLTEHTAEHTQEIAQDVEVLQTLDFIFAKARYAKAMKATK 293
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + I L KA HPLL Q Q D+E
Sbjct: 294 PLM----------------------NGDGFIRLKKARHPLLPQD-----QVVANDIE--- 323
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
GG+ + +VITGPNTG
Sbjct: 324 --------LGGDYS------------------------------------TIVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA++GLHI + E ++ FD+VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDNVFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
NI+ + SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y
Sbjct: 400 VNILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARV-LATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA +EFD L PTYK+L GVPGRS+A I+ RLGLP ++ A+ A E
Sbjct: 459 NRQGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAEHNE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
++ +I +E+ K + E + E + LHK L
Sbjct: 519 VDLMIASLEKSKKRADEELSETESIRKEAEKLHKEL 554
>gi|339448753|ref|ZP_08652309.1| MutS2 protein [Lactobacillus fructivorans KCTC 3543]
Length = 785
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 201/654 (30%), Positives = 322/654 (49%), Gaps = 108/654 (16%)
Query: 191 KSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIH- 249
K + +DEDG + DSAS L+ R ++ LE + M+ I + ++ L + ++
Sbjct: 134 KRLQASIDEDGRVLDSASSELRSIRREITRLETNIKTTMNKYIHGKQSKYLSEPIITVRD 193
Query: 250 GRLCIRTGA-DQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLA 307
GR I + D+ F G++ S+SG+ IEP S V N++L++++ K +L
Sbjct: 194 GRYVIPVKSEDKQKFGGIVHDQSTSGLTLYIEPQSVVSSNNDLRRSQLDERKEIHKILSE 253
Query: 308 LTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSK 367
L++ ++ +E+ + + D++NA+A ++ T P
Sbjct: 254 LSDMIRPYQEELMENAAQLGHFDLINAKAKFADQMHATKP-------------------- 293
Query: 368 VSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDT 427
S +E + L HPL+ Q +K+ G
Sbjct: 294 --SVSKENHVNLKNVRHPLIDQ----------------------KKVVGN---------- 319
Query: 428 NLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
DI I R ++ITGPNTGGKTI +KT+G+ +MA+SG+
Sbjct: 320 --------------------DIQIGSDFRQIIITGPNTGGKTITIKTLGINQLMAQSGIF 359
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
++++E ++V FD+VFADIGDEQS+ +LSTFS H+ + NI+ T+QSL+L+DE+GAG
Sbjct: 360 VMANEGSQVGVFDNVFADIGDEQSIEANLSTFSSHMDNLINILKHITNQSLILIDELGAG 419
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL MS+L+ ESGS + +ATTH+ ELK Y+ N+ MEFDE LKPTY
Sbjct: 420 TDPKEGAALAMSILDKMGESGSEV-LATTHYPELKVYGYNRPETINSSMEFDEKTLKPTY 478
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
++L GVPG+S+A+NIA+RLGLP ++ A L + S +IN +I ++ + E +
Sbjct: 479 RLLLGVPGQSNALNIAKRLGLPDTIISEASSLMDSDSQDINRMIKQLTKQTKDADERARK 538
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+ L + LH +L K ++ S ++DA A +V K+ +Q +
Sbjct: 539 LKVELAENERLHADLNDKLTKFTDNKDSM-------VNDAKRQANQIVSKTRRQANEIIN 591
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
V KR Q P L K GK ++ +Q HP ++ V+K K
Sbjct: 592 NLHQ-VQKRTNQ--PIKENELIDAK-GK-----INSLEQ-------HPELKNNRVLKREK 635
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K GD V V S+G++G ++K + K+ VQ+G +K + +D+
Sbjct: 636 AKHHFKE------GDDVLVKSYGQRGVLLK-KMGKDNWEVQLGILKMKVSESDL 682
>gi|87301320|ref|ZP_01084161.1| putative DNA mismatch repair protein MutS family protein
[Synechococcus sp. WH 5701]
gi|87284288|gb|EAQ76241.1| putative DNA mismatch repair protein MutS family protein
[Synechococcus sp. WH 5701]
Length = 800
Score = 259 bits (662), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 237/822 (28%), Positives = 363/822 (44%), Gaps = 166/822 (20%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
+ E+L +LEW++L ++SFA TS G A + + +SLRLL ET+ + +
Sbjct: 4 IAAEALELLEWERLGQHLASFASTSAG--AAHCRALPLAADRSESLRLLAETSELLGLDG 61
Query: 109 HGSCSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
L G DL+ +R + + LAV + + L+ + A
Sbjct: 62 LIEGGLSFQGAADLT---GTLRHCAKGGTAGGEDLLAVASTQAVARRLRRQIEAP----- 113
Query: 168 DLYIRFMPL-TQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
P+ +Q++ L L + + ++E G + D ASP L R Q+ L +
Sbjct: 114 ----ELRPVCSQLMGDLRTLPELEQRLRFCLEEGGRVADRASPELAGLRQQLAGLRQLRR 169
Query: 227 QLMDMLIRNENNESLFLEVSSI---HGR--LCIR-TGADQLSFKGLLL-SSSSGIGSVIE 279
+ L+R + L+ S I +GR L ++ T A QL GL+ SS+SG IE
Sbjct: 170 DRLQELMRRQGG---LLQDSVIAERNGRPVLAVKVTAASQLP--GLVHDSSASGSTVFIE 224
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
P + + L +++++ + E VL +L+ + + +E++ ++ LDV ARA Y
Sbjct: 225 PKAVITLGNQIRELEGRERQEEWRVLASLSALVAEEAPALEELHRVLVALDVALARARYG 284
Query: 340 LSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAW 399
G P + S++ + + L HPLLL Q +
Sbjct: 285 QWLGAVRPEL--------------------SADPQAPVLLRDLRHPLLLWQER------- 317
Query: 400 KDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLV 459
R GE A VP+ + + + RV+
Sbjct: 318 ---------------------RGGE-----------------AKVVPVTVSVGAELRVVA 339
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
ITGPNTGGKT+ LK+VGLA +MA++GL + S ++PW V ADIGDEQSL Q+LSTF
Sbjct: 340 ITGPNTGGKTVTLKSVGLAALMARAGLFLPCSGTPQLPWCSLVLADIGDEQSLQQNLSTF 399
Query: 520 SGHLKQIGNIISQ-----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIA 574
SGH+++I I+ + +LVLLDE+GAGT+P EGTAL ++LL AE + LTIA
Sbjct: 400 SGHVRRIARILEALDAPAAPGATLVLLDEVGAGTDPTEGTALAIALLRHLAER-ARLTIA 458
Query: 575 TTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQ 634
TTH GELK LKY++ FENA + FD L PTY + WG+PGRS+A+ IA RLGL V+
Sbjct: 459 TTHFGELKALKYADSRFENASVAFDSDTLSPTYHLQWGIPGRSNALAIASRLGLDQAVIA 518
Query: 635 NARQLYGA-ASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK------------- 680
A L E+N+VI +E + + E EA L + LH+
Sbjct: 519 EANGLLAPRGEGELNQVIRGLEDQRRRQQEAAEEAAALLARTELLHEELLQRWQQQQEQS 578
Query: 681 -NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQ 739
L RR+ LEH I D R ++ +
Sbjct: 579 AELQEQRRQALEH----------SIRDGQQEVRRIIRR---------------------- 606
Query: 740 LRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPN 799
LR + G +Q V+ P ++S + P
Sbjct: 607 LRQGGGDGERARQAG-------VRLKQLQVEHTPQPQRRATSGWR-------------PE 646
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
VG+ + + S GK V+++ E+ V+ G ++ + + I
Sbjct: 647 VGERIRLLSLGKAAQVLEISADGRELSVRCGVLRLQVDLSGI 688
>gi|33863813|ref|NP_895373.1| DNA mismatch repair protein MutS family protein [Prochlorococcus
marinus str. MIT 9313]
gi|33635396|emb|CAE21721.1| putative DNA mismatch repair protein MutS family [Prochlorococcus
marinus str. MIT 9313]
Length = 828
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 229/833 (27%), Positives = 377/833 (45%), Gaps = 124/833 (14%)
Query: 16 FNTKSFAITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLG 75
+ + +++ R + S V +S S ++L+ LEW +LC ++ FA T G
Sbjct: 6 YGRDDWLLSSSVGRNSVEMSAVVMSSEVSTASLAFQDTLKQLEWPRLCEHLAGFASTLQG 65
Query: 76 REATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGV-DLSLVKSAIREVRRA 134
R Q S+ S L ET + L GV DL + + + A
Sbjct: 66 RRHC--QTLSLPADLSASRLRLAETLEIGALDGLIDGGLSFQGVHDLGHILARCSKGGVA 123
Query: 135 SPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIM 194
S E LAV L + L+ ++ D +R ++ +++ + L + +
Sbjct: 124 SG---EELLAVADTLAAARRLR-------RQINDPELRPT-ISSLLLDVATMPELERRLK 172
Query: 195 QVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCI 254
++E G + D S L R Q Q L ++ + ++R ++ HGR +
Sbjct: 173 FALEEGGRVADRVSSKLAGLRRQWQGLRQERRDCLQEVVRRHAAMLQDTVIADRHGRPVL 232
Query: 255 RTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKM 312
A +S GL+ SS+SG +EP + L++ L + + + ++ VL L+ +
Sbjct: 233 AVKAAAVSQLPGLVHDSSASGSTVFVEPQVVITLSNRLAELDGRIREQQQLVLAELSAAV 292
Query: 313 QVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSE 372
I ++ ++QLD+ AR Y GG P + H + S
Sbjct: 293 AEAGVSIGRLAEVLLQLDLALARGRYGQWLGGVPPTL-----------HAEAAAPFS--- 338
Query: 373 REWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPS 432
L + HPLL+ QH++ +A
Sbjct: 339 ------LQELRHPLLVWQHRRDHGEA---------------------------------- 358
Query: 433 EMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE 492
VPI + ++ +V+ ITGPNTGGKT+ LK+VGLA++MA++GL + +
Sbjct: 359 -----------VVPISVEVSSTLKVVAITGPNTGGKTVTLKSVGLALLMARAGLLLPCTG 407
Query: 493 YAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI---ISQSTSQSLVLLDEIGAGTN 549
+PW V ADIGDEQSL Q+LSTFSGH+K+IG I +++ +LVLLDE+GAGT+
Sbjct: 408 SPSMPWCAQVLADIGDEQSLQQNLSTFSGHVKRIGCILEALNEGPGPALVLLDEVGAGTD 467
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EGTAL +LL A+ + LTIATTH G+LK LKY + FENA + FD + PTY++
Sbjct: 468 PSEGTALATALLRTLADR-ARLTIATTHFGKLKALKYGDSRFENASVAFDGETMLPTYRL 526
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYG-AASAEINEVIIEMERFKTQFLEHVHEA 668
WG+PGRS+A++IA RLGL G V+ +A++L G E+NEVI +E ++ +A
Sbjct: 527 QWGIPGRSNALSIAMRLGLDGAVIAHAQELLGPCGDGEVNEVIRGLEEQRSLQQAAAEDA 586
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
L + LH+ LL R++K +K S A L + Q+L S +
Sbjct: 587 AALLARTELLHEELL------------SRWQKQRKQSAA------LQEQGRQKLESSIRE 628
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
+ V + ++LR + + G+ + ++ + I+
Sbjct: 629 GQKEVRQLIRRLREGRADGESARRAGQRLRRIQADHR--------------------IQP 668
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ P VG+ + + + GK VI + +++ V+ G M+ ++ + +
Sbjct: 669 QRKQHMGWRPEVGERIRLLALGKAAEVIAISEDGKQLTVRCGVMRSTVELSGV 721
>gi|227524346|ref|ZP_03954395.1| MutS family DNA mismatch repair protein [Lactobacillus hilgardii
ATCC 8290]
gi|227088577|gb|EEI23889.1| MutS family DNA mismatch repair protein [Lactobacillus hilgardii
ATCC 8290]
Length = 788
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 227/802 (28%), Positives = 375/802 (46%), Gaps = 137/802 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE++K+ ++++ T GRE + QL ++ + RL + + A ++ G
Sbjct: 6 LETLEYNKIKDQLANYLTTDRGRE-IIDQLRPSSKFEEVDHRLKETEDGANIVRLQGEIP 64
Query: 114 LDLTGVDLSLVKSAIREVR-RASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L+ + ++ +R + L E + LL+ T+ ED +L +
Sbjct: 65 I----PKLTEISPYMKRLRIENASLSGTELSHITKLLRAVRTINDFFDNFQDEDVNLTV- 119
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
++Q++ QL + + K ++Q ++EDGSI D+AS L+ R + + + +
Sbjct: 120 ---VSQIVSQLTLMPEITKRMVQSINEDGSILDTASSELRTIRRTINRTQNDIRSRIGKY 176
Query: 233 IRNENNESLFLEVSSIHGR-----LCIRTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
++ ++S +L S I R L IR Q F G++ S+SG +EP + V +
Sbjct: 177 LKG--SDSKYLTESIITMREDRFVLPIRADYKQ-HFGGIVHDQSASGQTLYVEPSNVVEM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N++L++ + + E +L LT+ ++ E+ +N + QLD VNA+A ++
Sbjct: 234 NNQLRRDQLAERAEERRILAELTDLIRPYRSELLNNMNLVGQLDFVNAKAKFAHQIRAVQ 293
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P I R+ + L +A HPL+ +D AN
Sbjct: 294 PEI----------------------SRDNVVNLRQARHPLI-----------ARDKVVAN 320
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
DI I + R ++ITGPNTG
Sbjct: 321 -----------------------------------------DIQIGDEYRTIIITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKTVGL +M +SGL I ++E +++ FD VFADIGD+QS+ +LSTFS H+ I
Sbjct: 340 GKTITLKTVGLLQLMGQSGLFITANEESQIGVFDDVFADIGDDQSIEANLSTFSSHMDNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
+I++ +SQSL+LLDE+GAGT+P EG AL M++++A +SG L IATTH+ ELK Y
Sbjct: 400 ISILNGMSSQSLILLDELGAGTDPKEGAALAMAIIDAIHQSGCEL-IATTHYPELKAYAY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA MEFD L+PTY+ L G+PG+S+A+NIA +LGL +++ AR + + +
Sbjct: 459 NRSGIINASMEFDIETLRPTYRFLMGIPGQSNALNIASKLGLSKGIIEKARAFTDSENQD 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL-------LRTRRKILEHCASQRFR 699
IN +I E+ + + + L S LH +L + +LE Q +
Sbjct: 519 INNMIDELTAQTKRAHDEADQLDEQLTDSTKLHDDLQNQFTQYQNQKDHLLEQAREQANQ 578
Query: 700 KVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHV 759
V+K +A + +HK QQ+ SA + L+ + R + +L KV + +
Sbjct: 579 VVEKAKISADKIIADLHKKQQQVGQSAIKENELIDAKGALNRLEVTPNLKKNKVLRKEKA 638
Query: 760 LTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVE 819
+F HP GD V V S+G++GT+I+ E
Sbjct: 639 -KHDF---------HP-------------------------GDEVLVKSYGQQGTLIRQE 663
Query: 820 PSKEEIVVQVGNMKWIMKFTDI 841
+ VQ+G +K + D+
Sbjct: 664 KNG-AWEVQLGILKMQIDENDL 684
>gi|314933341|ref|ZP_07840706.1| DNA mismatch repair protein MutS [Staphylococcus caprae C87]
gi|313653491|gb|EFS17248.1| DNA mismatch repair protein MutS [Staphylococcus caprae C87]
Length = 782
Score = 258 bits (660), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 231/796 (29%), Positives = 380/796 (47%), Gaps = 124/796 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL-LDETNAAIEM-QKH 109
++L VLE+DK+ V+ + LGRE + T D++ ++ET+ ++ KH
Sbjct: 4 KTLDVLEFDKIKSFVADETISDLGREKVDAMTPA---TEFDTVEFQINETDEISQIYNKH 60
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
SL +G L+ V I L +E + L+Q + ++ED +
Sbjct: 61 RLPSL--SG--LAKVSPLIHRANIGGVLNVSELNVIKRLIQVQNQFKTFYNQLLEEDEE- 115
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+++ L + + QL V L + I D + D AS AL+ R ++ +++ Q +
Sbjct: 116 -VKYPILDEKMNQLPVLTDLFQEIKDKCDT-YDLFDHASYALQGIRSKISSTNQRIRQNL 173
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
D ++++++N+ + V+ + R I A+ + F G++ S+SG IEP S V
Sbjct: 174 DRIVKSQSNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPTSVVE 233
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
+N+++ + R E +L LT ++ VD D I + + Q+D + A+A Y+ S GT
Sbjct: 234 MNNQISRLRNDEAVERERILTELTGQVAVDADSILIAESVMGQIDFLIAKARYARSIKGT 293
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
P ++E T+YLP A+HPLL K+ A
Sbjct: 294 KPTF----------------------KKERTVYLPNAFHPLL-----------DKETVVA 320
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
NT +E V ++ITGPNT
Sbjct: 321 NT-------------------------------IEFIDDV----------ETVIITGPNT 339
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKT+GL ++MA+SGL + + + +++ F++V+ DIGDEQS+ QSLSTFS H+K
Sbjct: 340 GGKTVTLKTLGLIIVMAQSGLLVPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKN 399
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I I+ ++ SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK
Sbjct: 400 IVEILHEADKNSLILFDELGAGTDPSEGAALAMSILDYVRNLGSLV-MATTHYPELKAYS 458
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
Y+ + NA +EF+ L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G
Sbjct: 459 YNCEGVMNASVEFNVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQ 518
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKIS 705
EIN +I +ER E E + ++ H L + ++ + S +K
Sbjct: 519 EINSMIESLERNSKCVDEQRIELDRLVREAQETHDALAKQYQQYQNYEQSLMNEAKEK-- 576
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQ 765
A Q SA++ + K + LR + + +H L +
Sbjct: 577 -------------ANQRVKSATKEADTILKELRDLRDNKGAEV-------KEHELIDKKK 616
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEI 825
Q D+ E K IKQ+ + K+ + N GD V V S+G+KG V+++ ++E
Sbjct: 617 QLD-DQYE---------AKSIKQTVQKKKYDKINAGDEVKVLSYGQKGEVLEL-VGEDEA 665
Query: 826 VVQVGNMKWIMKFTDI 841
VVQ+G +K + D+
Sbjct: 666 VVQMGIIKMKLPIEDL 681
>gi|304317232|ref|YP_003852377.1| MutS2 family protein [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302778734|gb|ADL69293.1| MutS2 family protein [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
Length = 786
Score = 258 bits (660), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 192/605 (31%), Positives = 300/605 (49%), Gaps = 90/605 (14%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
R LE+DK+ + + + + G+E L N + + +D+ N A+ + +G+
Sbjct: 6 FRNLEFDKIVNHIVNLCDSEPGKEMALDIKPYDN--LDKAAKEIDKVNEAVSFISSYGNM 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
S +D L K+ I+ S L + + + L + ++ LR+ KE+++
Sbjct: 64 SFAFKKIDDILNKAKIK-----STLNIGQLMTISRFLSLAGRVKSYLRSE-KEESN---- 113
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
+ L + ++L R L + I ++V + + D ASPALK R Q + K+ ++ +
Sbjct: 114 YPLLREYNIRLTNLRDLYERIDRIVISEDELSDDASPALKDIRRQKAHINNKIKDTLNSI 173
Query: 233 IRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDEL 290
I + + E ++ +GR + + FKGL+ SSSG IEP++ V LN++L
Sbjct: 174 IASSSKELQDPIITIRNGRYVVPVKQEYRGMFKGLIHDQSSSGATLFIEPMTVVELNNDL 233
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIF 350
+Q + E +L LT+ + + EI + + + +LDV+ A+A YS++ + P +F
Sbjct: 234 RQLEIKEQQEIEKILSELTDDISQHISEIHENMIALTELDVIFAKAKYSINTNSSKP-VF 292
Query: 351 LPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELR 410
TH I L A HPLL
Sbjct: 293 --------NTH-------------GYINLKNARHPLL----------------------- 308
Query: 411 RRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTI 470
P + V P+ + ++ LVITGPNTGGKT+
Sbjct: 309 --------------------PKDAVV-------PISV--YLGDSFDTLVITGPNTGGKTV 339
Query: 471 CLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 530
LKTVGL +MA SGL+I + E + V +FD++F DIGDEQS+ QSLSTFS H+ I I+
Sbjct: 340 TLKTVGLLTLMAMSGLNIPTDEGSSVAFFDNIFVDIGDEQSIEQSLSTFSAHMTNIVTIL 399
Query: 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590
+ TS SLVLLDE+GAGT+P EG AL MS+L+ F + TIATTH+ ELK ND
Sbjct: 400 NSVTSNSLVLLDELGAGTDPTEGAALAMSILD-FLHRINCRTIATTHYSELKQYALKNDG 458
Query: 591 FENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEV 650
ENA +EFD L+PTY++ G+PG+S+A I+ RLGL ++ NAR + ++
Sbjct: 459 VENASVEFDVETLRPTYRLTIGIPGKSNAFEISRRLGLNEEIIDNARNYITNEELKFEDI 518
Query: 651 IIEME 655
I ++E
Sbjct: 519 IKDLE 523
>gi|224476251|ref|YP_002633857.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus carnosus subsp. carnosus TM300]
gi|254766600|sp|B9DPU2.1|MUTS2_STACT RecName: Full=MutS2 protein
gi|222420858|emb|CAL27672.1| MutS2-like protein [Staphylococcus carnosus subsp. carnosus TM300]
Length = 782
Score = 258 bits (660), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 225/797 (28%), Positives = 380/797 (47%), Gaps = 126/797 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGR--EATLTQLWSINQTYQDSLRLLDETNAAIEM-QK 108
++L VL++DK+ V + A + LGR A +T Y+ + ++ET+ ++ K
Sbjct: 4 KTLDVLDFDKIKAQVENEAVSDLGRVKAAAMTPASD----YETVVFQMNETDELSQIYNK 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
H SL +G L+ VK I + S L E + L+Q + ++E+
Sbjct: 60 HRLPSL--SG--LTEVKPLIHRAKIGSILNVRELNQIKRLIQVQNQYKTFYSQLLEEEE- 114
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
I + L + + QL + L + I Q D + D AS L+ R ++ +++ Q
Sbjct: 115 -AINYPILDERMAQLPILTDLYQEIHQKCDA-YDLFDDASHELQSIRSRIHSTSQRIKQN 172
Query: 229 MDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAV 284
+D ++++++N+ + ++ + R I A+ + F G++ SSSG IEP + V
Sbjct: 173 LDRIVKSQSNQKKLSDAIITVRNDRHVIPVKAEYRQDFNGIVHDQSSSGQTLYIEPSAVV 232
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
+N+++ + R E +L L+ ++ + D + + Q+D + A+A Y S G
Sbjct: 233 EMNNKISRLRNDEKVEVERILSVLSGEVAAEADACLIAESVMGQIDFLTAKARYGQSIKG 292
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
T P E +YLPKA+HPL
Sbjct: 293 TKPEFT----------------------EERNVYLPKAFHPL------------------ 312
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
L+ A V I A + ++ITGPN
Sbjct: 313 ----------------------------------LDRATVVANTIEFAEDIQTVIITGPN 338
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKT+GL ++MA+SGL I + + +K+ FD+V+ DIGDEQS+ QSLSTFS H+K
Sbjct: 339 TGGKTVTLKTLGLIIVMAQSGLLIPALDGSKLSVFDNVYCDIGDEQSIEQSLSTFSSHMK 398
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I I+ + SL+L DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH+ ELK
Sbjct: 399 NIVEILKHADHNSLILFDELGAGTDPSEGAALAMSILDHVQKLGSLV-MATTHYPELKAY 457
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
Y+ + NA +EFD L PTYK+L GVPGRS+A I+ +LGL G +++ A+ L G
Sbjct: 458 SYNREGVMNASVEFDVNILSPTYKLLMGVPGRSNAFEISSKLGLSGNIIREAKSLIGQDE 517
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
EIN +I +E + + E L ++ +H +L + ++ Q + K Q +
Sbjct: 518 QEINNMIASLETNAKKVEDQRIELDRLLREAKQVHGDLNK------KYEQYQNYEK-QLM 570
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
DA K+ Q++ + +A ++ K + +R + + ++ + + L +
Sbjct: 571 DDAKV-------KANQRVKAATKEADDII-KDLRHMRDEKNAEVKEHELIEKRKHLDEQY 622
Query: 765 QQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEE 824
+ T DIKQ+ + ++ + GD V V ++G+KG V+++ +E
Sbjct: 623 EGT-----------------DIKQNVKKQKWDEIQAGDEVKVLTYGQKGEVLEI-LDDDE 664
Query: 825 IVVQVGNMKWIMKFTDI 841
VVQ+G +K + D+
Sbjct: 665 AVVQMGIIKMKLPIADL 681
>gi|350269070|ref|YP_004880378.1| MutS2 protein [Oscillibacter valericigenes Sjm18-20]
gi|348593912|dbj|BAK97872.1| MutS2 protein [Oscillibacter valericigenes Sjm18-20]
Length = 795
Score = 258 bits (660), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 227/806 (28%), Positives = 355/806 (44%), Gaps = 131/806 (16%)
Query: 47 SRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTY-QDSLRLLDETNAAIE 105
S + +S+R LE L ++ A ++ EA L +T ++ LRLLD+T+AA E
Sbjct: 2 SELFEKSMRTLE---LPQVLTLLAAQAVSDEAKRRALALTPETEPEEVLRLLDQTDAARE 58
Query: 106 MQK-HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIK 164
M GS S L V+ A+ R L E L + LL + + A
Sbjct: 59 MIGLRGSPSFS----GLKPVREALDRADRGGGLNTRELLTIAGLLTAARRTREYFNADTG 114
Query: 165 EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
E + + + + L NR L I V+ ++ +I D+ASP L R +++ + K
Sbjct: 115 EKS-------AIDHLFLSLHGNRFLEDRIKSVILDEDTISDNASPELNDIRRKMRAAQAK 167
Query: 225 LYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQ-LSFKGLLLS-SSSGIGSVIEP 280
Q++ +I + + + E ++ GR + A+Q + GL+ SS+G +EP
Sbjct: 168 SRQVLQRIISSPSYSKVLQESLITQRDGRFVVPVKAEQKAALPGLVHDVSSTGATLFVEP 227
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
+ V N+E + A K E +L L+ ++I+ + ++ LD++ AR S
Sbjct: 228 MGVVQANNEYIELEAREKKEIERILAELSADAANHREDIQWDYDALVHLDLIFARGQLSY 287
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
G P I R+ I L KA HPL
Sbjct: 288 KLDGVRPEI----------------------RRDGAIVLRKARHPL-------------- 311
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
L+ A VPIDI + LVI
Sbjct: 312 --------------------------------------LDRAKAVPIDIELGDSFDTLVI 333
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT+ LKT+GL +MA+ GLHI ++ +++ ++ V AD+GDEQS+ QSLSTFS
Sbjct: 334 TGPNTGGKTVSLKTLGLLTLMAQCGLHIPAASGSQISVYERVLADVGDEQSIEQSLSTFS 393
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H+ I I+ ++ ++LVL DE+GAGT+P+EG AL +++++ G+ L ATTH+ E
Sbjct: 394 AHMTSIVRILQETDQRTLVLFDELGAGTDPVEGAALAIAIIQQVRRFGAKLA-ATTHYAE 452
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LKT + ENA EFD L+PTY++L G+PG+S+A I+ RLGLP VV++A+
Sbjct: 453 LKTFAMTTAGVENASCEFDVESLQPTYRLLIGIPGKSNAFAISRRLGLPDDVVEDAKAQM 512
Query: 641 GAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRK 700
S +V+ ++E+ K Q LE L R R R +E
Sbjct: 513 AGDSVRFEDVLTQLEQ-KRQALEKKQVEVDRLYQQREEDARKGREFRTQMERARDN---- 567
Query: 701 VQKISDAAAIARSLVHKSAQQLCPSASQA-----RSLVHKRAQQLRPSASQSLHCTKVGK 755
ARS A+++ A A L R QQ + A+Q+L+ +
Sbjct: 568 ----------ARSRGEADARRILRDAKAAADQTMNELAELRRQQAKADAAQNLNEAQAAI 617
Query: 756 NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ + + + + + P S ++ Q E+P V L V S GK G
Sbjct: 618 RRGLNEAEEKLRSREFAPEPIPRPSRPIQKGDQ------VEIPGVKTLAEVVSVGKDGV- 670
Query: 816 IKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ +Q G MK +K ++
Sbjct: 671 ---------LQLQAGRMKMTVKANEV 687
>gi|78212059|ref|YP_380838.1| MutS2 family protein [Synechococcus sp. CC9605]
gi|78196518|gb|ABB34283.1| MutS2 family protein [Synechococcus sp. CC9605]
Length = 799
Score = 258 bits (660), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 237/804 (29%), Positives = 369/804 (45%), Gaps = 129/804 (16%)
Query: 48 RVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQ 107
R E+L +LEW ++C +S FA T +GR+A Q + + +S + L ET +EM
Sbjct: 7 RAQKETLELLEWHRVCDHLSGFASTGMGRDAARVQ--PLPASLDESKQRLAET---VEM- 60
Query: 108 KHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVA----LLQFSETLQLSLRAAI 163
+ DLT LS R V+ P+ + VA LL +ETL + R
Sbjct: 61 ---AVLNDLTEGGLSF-----RGVQNLEPVVLRCSKGGVASGEELLAVAETLAAARRLRR 112
Query: 164 KEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
+ D D +R + T +I + L + + ++E G + D AS AL R Q L +
Sbjct: 113 QID-DPELRPV-CTALIETMVTLPELEQRLKFALEEGGRVADRASSALSALRHQWNGLRQ 170
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIHGR--LCIRTGADQLSFKGLLLSSSSGIGSVIEPL 281
+ + L+R ++ HGR L ++ GA + SS+SG +EP
Sbjct: 171 ERRDKLQELLRRLAPSLQDSVIAERHGRPVLAVKAGAVSQVPGQVHDSSASGSTIFVEPR 230
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
S + + ++L + + + E VL L+ + + + +++ + LD+ AR Y
Sbjct: 231 SVLTMGNKLAELESRIRDEERKVLAELSALVAEEASALNQVVAVLRTLDLALARGRYGRW 290
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
GG P + EP E HPLL+ QHK+
Sbjct: 291 LGGVEPQL------------EPAA--------EAPFRFSGLRHPLLVWQHKR-------- 322
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
+ P VPI + ++ + RV+ IT
Sbjct: 323 -------------------------ADGPPV------------VPISVEVSPELRVVAIT 345
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ LK++GLA +MA++G+ + S +PW V ADIGDEQSL QSLSTFSG
Sbjct: 346 GPNTGGKTVTLKSIGLAALMARAGMLLPCSGQPSLPWCAQVLADIGDEQSLQQSLSTFSG 405
Query: 522 HLKQIGNIIS---QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578
H+K+IG I+ + ++ +LVLLDE+GAGT+P EGTAL +LL+A A+ + LTIATTH
Sbjct: 406 HVKRIGRILEALQRGSAPALVLLDEVGAGTDPSEGTALATALLKALADR-ARLTIATTHF 464
Query: 579 GELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
GELK LKY + FENA + F+ L PTY++LWG+PGRS+A+ IA RLGL V+ A+Q
Sbjct: 465 GELKALKYDDARFENASVAFNPETLSPTYELLWGIPGRSNALAIATRLGLDSDVLHQAQQ 524
Query: 639 LYG-AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
L E+N VI +E + + +A L + LH+ LL+ +K + A ++
Sbjct: 525 LLAPGGDGEVNSVIRGLEEQRQRQQAAAEDAAALLARTELLHEELLQRWQKQKQQTAQRQ 584
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
+ Q++ Q + + R+L+ + LR + + G+
Sbjct: 585 EQGRQRLE--------------QSIRQGQKEVRTLIRR----LRDERADGETARRAGQRL 626
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L + + T + P P VGD V + + GK V+
Sbjct: 627 RSLEDHHRPTPERRAPKPGWR-------------------PAVGDHVRLLALGKAADVLA 667
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ ++ V+ G M+ + T +
Sbjct: 668 ITDDGLQLTVRCGVMRTTVDLTAV 691
>gi|327475225|gb|AEA77207.1| MutS2 [Bacillus aquimaris]
Length = 786
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 225/793 (28%), Positives = 385/793 (48%), Gaps = 120/793 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
LR LE+DK+ + FA ++LG + L S+ Y++ + L +ET+ A+ + + G
Sbjct: 6 LRTLEFDKIKELLKGFAASALGHARVSSLLPSVE--YEEIVHLHEETDEAMTILRLKGHA 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
L + ++ ++ + L P+E + V + ++ S L + ++E+ ++ +
Sbjct: 64 PLG----GIFDIRPHVKRAQIGGMLAPSELVQVASTIRASRKLTKFVEELLEEEVEIPLL 119
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
+ +I + L ++I +VVD++G I DSAS L+ R Q++ E ++ + ++ +
Sbjct: 120 ENKMNTVIPLPY----LEQNIRKVVDDNGEILDSASETLRSIRTQLRSNESRIREKLEKM 175
Query: 233 IRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
R+ N + + + ++ + R I + G ++ SSSG IEP + V LN+
Sbjct: 176 TRSSNAQKMLSDAIITIRNDRYVIPVKQEYRGHYGGIIHDQSSSGQTLFIEPEAIVALNN 235
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
+L++ R E +LLAL+ ++Q +E+ +++ + +D + +A + S G+ P
Sbjct: 236 QLRELRLKEQTEIEKILLALSVEVQEAAEELLLIVSILSDVDFMFTKAKFGRSIKGSKPI 295
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
I E I L KA HPL
Sbjct: 296 I----------------------NNEGRIKLNKARHPL---------------------- 311
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
L + V DI + ++ +VITGPNTGGK
Sbjct: 312 ------------------------------LPIEEAVANDIELGKEFSSIVITGPNTGGK 341
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GL MMA++GL I + + ++V F S++ADIGDEQS+ QSLSTFS H+ I
Sbjct: 342 TVTLKTLGLTNMMAQAGLPIPALDDSEVGIFRSIYADIGDEQSIEQSLSTFSSHMVNIVE 401
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I+ + +SLVL DE+GAGT+P EG AL +S+L+ G+ + +ATTH+ ELK Y+
Sbjct: 402 ILEKVDHESLVLFDELGAGTDPQEGAALAISILDEVHGKGARV-VATTHYPELKAYGYNR 460
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
+ NA +EFD L PTYK+L GVPGRS+A I++RLGL V+ A+ G + E+
Sbjct: 461 EGVVNASVEFDVETLSPTYKLLLGVPGRSNAFEISKRLGLSDSVILRAKSHIGTDTKEVE 520
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+I +E + Q + + EA L + +HK++ +++++E+ +K Q A
Sbjct: 521 NMIASLEENRRQGEKELEEAHELLRQAEKMHKDM---QKQMMEYYE----KKDQLYEKAQ 573
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
A LV K+ ++ R + +++ Q++ + +H K ++ T
Sbjct: 574 LKASDLVEKAKEEADQVIKDLRRMQKEKSAQIKE--HELIHAKK----------QLEEAT 621
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
P SSV K + + ++ GD V V SF +KG +I+ SK E VQ
Sbjct: 622 ------PKLKKSSVQKSKGNNGK----QVLKAGDEVKVLSFDQKGHLIEKVSSK-EWQVQ 670
Query: 829 VGNMKWIMKFTDI 841
+G MK +K +D+
Sbjct: 671 MGIMKMKVKESDL 683
>gi|124022099|ref|YP_001016406.1| DNA mismatch repair protein MutS [Prochlorococcus marinus str. MIT
9303]
gi|123962385|gb|ABM77141.1| putative DNA mismatch repair protein MutS family protein
[Prochlorococcus marinus str. MIT 9303]
Length = 828
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 230/833 (27%), Positives = 374/833 (44%), Gaps = 124/833 (14%)
Query: 16 FNTKSFAITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLG 75
+ + +++ R + S V +S S ++L+ LEW +LC ++ FA T G
Sbjct: 6 YGRDDWLLSSSVGRNSVEMSAVVMSSEVSTASLAFQDTLKQLEWPRLCEHLAGFASTLQG 65
Query: 76 REATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGV-DLSLVKSAIREVRRA 134
R Q S+ DS L ET + L GV DL + + + A
Sbjct: 66 RRHC--QTLSLPADLSDSRLRLAETLEIGALDGLIDGGLSFQGVHDLGHILARCTKGGVA 123
Query: 135 SPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIM 194
S E LAV L + L+ ++ D +R ++ +++ + L + +
Sbjct: 124 SG---EELLAVADTLAAARRLR-------RQINDPELRPT-ISALLLDVATMPELERRLK 172
Query: 195 QVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCI 254
++E G + D S L R Q Q L ++ + +IR ++ HGR +
Sbjct: 173 FALEEGGRVADRVSSKLAGLRRQWQGLRQERRDCLQEVIRRHAAMLQDTVIADRHGRPVL 232
Query: 255 RTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKM 312
A +S GL+ SS+SG +EP + L++ L + + + ++ VL L+ +
Sbjct: 233 AVKAAAVSQLPGLVHDSSASGSTVFVEPQVVITLSNRLAELDGHIREQQQLVLAELSAAV 292
Query: 313 QVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSE 372
I ++ ++QLD+ AR Y GG P + H + S
Sbjct: 293 AESGVSISRLGEVLLQLDLALARGRYGQWLGGVPPAL-----------HAEAAAPFS--- 338
Query: 373 REWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPS 432
L + HPLL+ QH+++ +A
Sbjct: 339 ------LQELRHPLLVWQHRREHGEA---------------------------------- 358
Query: 433 EMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE 492
VPI + ++ +V+ ITGPNTGGKT+ LK+VGLA++MA++GL + +
Sbjct: 359 -----------VVPISVEVSSTLKVVAITGPNTGGKTVTLKSVGLALLMARAGLLLPCTG 407
Query: 493 YAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS---QSTSQSLVLLDEIGAGTN 549
+PW V ADIGDEQSL Q+LSTFSGH+K+IG I+ + +LVLLDE+GAGT+
Sbjct: 408 SPSMPWCAQVLADIGDEQSLQQNLSTFSGHVKRIGRILEALIEGPGPALVLLDEVGAGTD 467
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EGTAL +LL A+ + LTIATTH G+LK LKY + FENA + FD + PTY++
Sbjct: 468 PSEGTALATALLRTLADR-ARLTIATTHFGKLKALKYGDSRFENASVAFDSETMLPTYRL 526
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYG-AASAEINEVIIEMERFKTQFLEHVHEA 668
WG+PGRS+A++IA RLGL V+ A++L G E+NEVI +E ++ +A
Sbjct: 527 QWGIPGRSNALSIAMRLGLDDAVIAQAQELLGPCGDGEVNEVIRGLEEQRSLQQAAAEDA 586
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
L + LH+ LL +K + A + + QK+ + + V + ++L +
Sbjct: 587 AALLARTELLHEELLSRWQKQRKQSADLQEQGRQKLESSIREGQKEVRQLIRRLREGRAD 646
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
S + Q+LR Q+ H + + QH+
Sbjct: 647 GES-ARRAGQRLR--RIQADHRIQPQRKQHI----------------------------- 674
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
P VG+ + + + GK VI + +++ V+ G M+ ++ + +
Sbjct: 675 ------GWRPEVGERIRLLALGKAAEVIAISEDGKQLTVRCGVMRSTVELSGV 721
>gi|384266410|ref|YP_005422117.1| DNA mismatch repair protein mutS [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387899448|ref|YP_006329744.1| DNA mismatch repair protein [Bacillus amyloliquefaciens Y2]
gi|380499763|emb|CCG50801.1| DNA mismatch repair protein mutS [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387173558|gb|AFJ63019.1| DNA mismatch repair protein [Bacillus amyloliquefaciens Y2]
Length = 785
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 203/636 (31%), Positives = 308/636 (48%), Gaps = 94/636 (14%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ--TYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ +++ A +SLGRE L QL + Q L ++E +A + ++ H
Sbjct: 6 LSSLEFHKVKEQITAHAVSSLGRE-KLLQLKPLTDLSDIQKQLDEVEEASAVMRLRGHAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++SA+R S L P E + LL + ++ + + + ED
Sbjct: 65 FG------GLTDIRSALRRAEIGSVLTPAEFTELSGLLYAVKQMKHFI-SQMTEDG---- 113
Query: 172 RFMPLTQM-IMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+PL Q +L L + I +D+ G + D ASPAL+ R Q++ LE ++ ++
Sbjct: 114 VGIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQLRTLESRVRDRLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +
Sbjct: 174 SMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ LQQA+ + E +L LTE EI + + + LD + A+A Y+ + T
Sbjct: 234 NNSLQQAKVKEKQEIERILRMLTEHTAEHTQEIAQNVEVLQTLDFIFAKARYAKAMKATK 293
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + I L KA HPLL Q Q D+E
Sbjct: 294 PLM----------------------NGDGFIRLKKARHPLLPQD-----QVVANDIE--- 323
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
GG+ + +VITGPNTG
Sbjct: 324 --------LGGDYS------------------------------------TIVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA++GLHI + E ++ FD+VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDNVFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
NI+ + SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y
Sbjct: 400 VNILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARV-LATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA +EFD L PTYK+L GVPGRS+A I+ RLGLP ++ A+ A E
Sbjct: 459 NRQGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAEHNE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
++ +I +E K + E + E + LHK L
Sbjct: 519 VDLMIASLENSKKRADEELSETESIRKEAEKLHKEL 554
>gi|90962080|ref|YP_535996.1| DNA mismatch repair protein [Lactobacillus salivarius UCC118]
gi|227891101|ref|ZP_04008906.1| DNA mismatch repair protein [Lactobacillus salivarius ATCC 11741]
gi|122448818|sp|Q1WT38.1|MUTS2_LACS1 RecName: Full=MutS2 protein
gi|90821274|gb|ABD99913.1| DNA mismatch repair protein [Lactobacillus salivarius UCC118]
gi|227866975|gb|EEJ74396.1| DNA mismatch repair protein [Lactobacillus salivarius ATCC 11741]
Length = 786
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 221/788 (28%), Positives = 366/788 (46%), Gaps = 134/788 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ ++ +F TS+G+ L + Y DE + ++ K G+
Sbjct: 6 LKTLEYDKVKQNLYAFTTTSMGKR--LIDKLEPSSDY-------DEISNSLAQTKDGADI 56
Query: 114 LDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
L + G +L +KS ++ + L E A+ +L+ + + K+ AD
Sbjct: 57 LRIKGGIPVPNLISIKSFLKRLDIGGTLNSKELAAIGRVLRATN----EVNRFFKDLADN 112
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I+ L + +L + K ++ ++ DG + D AS LK R Q+ + E + + +
Sbjct: 113 KIKLEVLFDDVAKLESLPEISKKLLVSIENDGHVTDDASTLLKSIRQQISVTEETIRERL 172
Query: 230 DMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
+ R N++ L V +I R + + S F G++ SSSG +EP V L
Sbjct: 173 NAYTRGTNSKYLSNAVVTIRNERYVLPVKQEYRSKFGGIVHDQSSSGQTLFVEPAVIVEL 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L+Q + + + +L L++++ E+ + LD +NA+A Y+ S T
Sbjct: 233 NNRLRQQQVAEREEINRILEELSKELAPYTHELNNNAKILGMLDFINAKAKYAHSIKAT- 291
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
EP+ SK E +YL + +HPL
Sbjct: 292 ---------------EPILSK------ENDVYLRQVWHPL-------------------- 310
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
L++ V DI I + + +VITGPNTG
Sbjct: 311 --------------------------------LDMKKAVKNDIMIGKDYQAIVITGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+GL +M +SGL+I + E +++ FD +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 339 GKTITLKTLGLVQLMGQSGLYIPAFEESRIGIFDDIFADIGDEQSIEQSLSTFSSHMTNI 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ +SLVL DE+GAGT+P EG AL +S+L+A GS + +ATTH+ ELK +
Sbjct: 399 VEILKGIDEKSLVLFDELGAGTDPQEGAALAISILDAVGAKGSYV-VATTHYPELKAYGF 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
NA MEFD L+PTY++L G+PGRS+A +I++RLGL ++V ARQL S +
Sbjct: 458 ERPNTINASMEFDANTLQPTYRLLIGIPGRSNAFDISQRLGLDKMIVMAARQLTSQDSQD 517
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+NE+I ++ + E R +L + LH + LE Q R+ + + +
Sbjct: 518 LNEMISDLVAKRHDAEEKEIMYRKYLREAEELHHD--------LETNFHQFERQKENMLE 569
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A + A Q+ + + ++++ SA+ ++ + Q + + Q+
Sbjct: 570 QA-------KERANQIVEETKKKSDELISELRKMKMSAASNIEEGSLIDAQGRVNALHQE 622
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
T + K + V++ KQ + PN D V V+S+G++G +++
Sbjct: 623 TNLKK--------NKVLRKAKQQQELH----PN--DDVMVNSYGQRGVLLR--------- 659
Query: 827 VQVGNMKW 834
+ GN W
Sbjct: 660 -KAGNHAW 666
>gi|260434383|ref|ZP_05788353.1| MutS2 family protein [Synechococcus sp. WH 8109]
gi|260412257|gb|EEX05553.1| MutS2 family protein [Synechococcus sp. WH 8109]
Length = 799
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 235/796 (29%), Positives = 366/796 (45%), Gaps = 129/796 (16%)
Query: 48 RVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQ 107
R E+L +LEW ++C +S FA T +GR+A Q + + ++S + L ET +EM
Sbjct: 7 RAQQETLELLEWHRVCDHLSGFASTGMGRDAARVQ--PLPASLEESKQRLAET---VEM- 60
Query: 108 KHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVA----LLQFSETLQLSLRAAI 163
LD DL+ + R V+ P+ + VA LL +ETL + R
Sbjct: 61 ----AVLD----DLTEGGLSFRGVQNLEPVVLRCSKGGVASGEELLAVAETLAAARRLRR 112
Query: 164 KEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
+ D D +R + T +I + L + + ++E G + D AS AL R Q L +
Sbjct: 113 QTD-DPELRPV-CTALIETMVTLPELEQRLKFALEEGGRVADRASSALSALRHQWNGLRQ 170
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIHGR--LCIRTGADQLSFKGLLLSSSSGIGSVIEPL 281
+ + L+R ++ HGR L ++ GA + SS+SG +EP
Sbjct: 171 ERRDKLQELLRRLAPSLQDSVIAERHGRPVLAVKAGAVSQVPGQVHDSSASGSTLFVEPR 230
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
S + + ++L + + + E VL L+ + + + +++ + LD+ AR Y
Sbjct: 231 SVLTMGNKLVELESRIRDEERKVLAELSALVAEEASVLNQVVAVLRALDLALARGRYGRW 290
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
GG P + + E HPLL+ QHK+
Sbjct: 291 LGGVEPQL--------------------EAASEAPFRFSGLRHPLLVWQHKR-------- 322
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
+ P VPI + ++ + RV+ IT
Sbjct: 323 -------------------------ADGPPV------------VPISLEVSPELRVVAIT 345
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ LK++GLA +MA++G+ + S +PW V ADIGDEQSL QSLSTFSG
Sbjct: 346 GPNTGGKTVTLKSIGLAALMARAGMLLPCSGQPSLPWCAQVLADIGDEQSLQQSLSTFSG 405
Query: 522 HLKQIGNIIS---QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578
H+K+IG I+ + S +LVLLDE+GAGT+P EGTAL +LL+A A+ + LTIATTH
Sbjct: 406 HVKRIGRILEALHRGGSPALVLLDEVGAGTDPSEGTALATALLKALADR-ARLTIATTHF 464
Query: 579 GELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
GELK LKY + FENA + F+ L PTY++LWG+PGRS+A+ IA RLGL V+ A+Q
Sbjct: 465 GELKALKYDDARFENASVAFNPETLSPTYELLWGIPGRSNALAIATRLGLDSDVLHQAQQ 524
Query: 639 LYG-AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
L E+N VI +E + + +A L + LH+ LL+ +K + A ++
Sbjct: 525 LLAPGGDGEVNSVIRGLEEQRQRQQAAAEDAAALLARTELLHEELLQRWQKQKQQTAQRQ 584
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
+ Q++ Q + + R+L+ + LR + K G+
Sbjct: 585 EQGRQRLE--------------QSIRQGQKEVRTLIRR----LRDERADGETARKAGQRL 626
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L + + T + P P+VGD V + + GK V+
Sbjct: 627 RSLEDHHRPTPERRAPKPGWR-------------------PSVGDRVRLLALGKAADVLA 667
Query: 818 VEPSKEEIVVQVGNMK 833
+ ++ V+ G M+
Sbjct: 668 ITDDGLQLTVRCGVMR 683
>gi|123965482|ref|YP_001010563.1| DNA mismatch repair protein MutS family protein [Prochlorococcus
marinus str. MIT 9515]
gi|123199848|gb|ABM71456.1| putative DNA mismatch repair protein MutS family [Prochlorococcus
marinus str. MIT 9515]
Length = 803
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 223/800 (27%), Positives = 375/800 (46%), Gaps = 132/800 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ES+ +LEWD L ++SFA T +G+ L + I Y+ S RLL ET E++K+
Sbjct: 19 ESIGLLEWDTLKTQIASFASTKMGKNVVLQ--FEIPTEYEISRRLLKETIEINELEKNLD 76
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
S+ +GV + K+ I + + ++ L + + S L+ L L
Sbjct: 77 KSISFSGV-FDICKN-IEICSKGGVINSSDLLEIAETISASRNLKKIL---------LDF 125
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQV-VDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
P ++ ++ + I+ I++ ++ +G I D AS L R ++ + + L++
Sbjct: 126 EQRPFISAFLKGLIDHNQIEKILKNGIESNGRISDRASQKLANLRQELLSKKSERRVLVN 185
Query: 231 MLIRNENNESLFLEVSSIHGR--LCIRTGADQLSFKGLLL-SSSSGIGSVIEPLSAVPLN 287
I+N V +GR L I+ + FKG++ SS+SG +EP S V
Sbjct: 186 KFIQNNLPYIQDTIVGDRYGRPVLAIKVQYAE-KFKGIIHDSSASGNTIYLEPESIVLKG 244
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+++ A V E +L + ++ + + +M N +++ + R+ YS GG +P
Sbjct: 245 NKIASMEARVAGEEFKLLKEWSHIIRDNNQSLLEMSNILLRAEFSLTRSRYSNWIGGNAP 304
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+ + P+ S + S HPLL+ ++K+K
Sbjct: 305 IV----------ENSPIVSLMGFS------------HPLLIWENKKK------------- 329
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
+ A PV ID I R T+V+ ITGPNTGG
Sbjct: 330 --------------------------------QAAKPVSIDFHIDRNTKVVAITGPNTGG 357
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LK +G+A++MA+SGL I S + +P+ ++F DIGD+QSL +LSTFSGH+ +I
Sbjct: 358 KTVALKGLGIALLMARSGLFIPSIQKPIIPFCPNIFVDIGDDQSLEGNLSTFSGHILRIK 417
Query: 528 NIISQSTSQ---SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
NI+ ++ S+VLLDEIG+GT+P EGTAL ++LL+ FA S +T+ATTH+G++K L
Sbjct: 418 NILEALNNKKGFSVVLLDEIGSGTDPSEGTALAIALLKEFAIV-SDITLATTHYGDIKAL 476
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
KYS++ FEN + FDE KP Y + WG+PGRS+A++I++R+G+ ++ NA
Sbjct: 477 KYSDNRFENVSVAFDEESFKPKYTLNWGIPGRSNALSISKRIGINEKILNNASNYLKPKE 536
Query: 645 AE-INEVI--IEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
E IN +I +E ER K Q + EA + + LH E F+K+
Sbjct: 537 VENINNIIKGLEEERLKQQ--KSAEEAAELIARTEILHD----------EIKNKYEFQKL 584
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLT 761
+A I + K ++ + + + +L+ K Q L ++ + + T
Sbjct: 585 ----NALKIQEAEKQKLSKHIKEAQKEVINLIKKLKDQNATGEDARLIGIRL---KEIET 637
Query: 762 SNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPS 821
+ Q+ V++ T S S P +GD + + S G +I ++
Sbjct: 638 DHLTQSNVER-----TTSWS----------------PKIGDFIKIKSLNSSGQIIDIDEK 676
Query: 822 KEEIVVQVGNMKWIMKFTDI 841
+ V+ G+ + + D
Sbjct: 677 AKSYEVKCGSFRSTLSINDF 696
>gi|385265748|ref|ZP_10043835.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. 5B6]
gi|385150244|gb|EIF14181.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. 5B6]
Length = 785
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 234/795 (29%), Positives = 373/795 (46%), Gaps = 126/795 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ--TYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ +++ A +SLGRE L QL + Q L ++E +A + ++ H
Sbjct: 6 LSSLEFHKVKEQITAHAASSLGRE-KLLQLKPLTDLSDIQKQLDEVEEASAVMRLRGHAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++SA+R S L P E + LL + ++ + + + ED
Sbjct: 65 FG------GLTDIRSALRRAEIGSVLTPAEFTELSGLLYAVKQMKHFI-SQMTEDG---- 113
Query: 172 RFMPLTQM-IMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+PL Q +L L + I +D+ G + D ASPAL+ R Q++ LE ++ ++
Sbjct: 114 VGIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQLRTLESRVRDRLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +
Sbjct: 174 SMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ LQQA+ + E +L LTE EI + + LD + A+A Y+ + T
Sbjct: 234 NNSLQQAKVKEKQEIERILRMLTEHTAEHTQEIAHNVEVLQTLDFIFAKARYAKAMKATK 293
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + I L KA HPLL Q Q D+E
Sbjct: 294 PLM----------------------NGDGFIRLKKARHPLLPQD-----QVVANDIE--- 323
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
GG+ + +VITGPNTG
Sbjct: 324 --------LGGDYS------------------------------------TIVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA++GLHI + E ++ FD+VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTVTLKTLGLLTIMAQAGLHIPADEGSEASVFDNVFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
NI+ + SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y
Sbjct: 400 VNILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARV-LATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA +EFD L PTYK+L GVPGRS+A I+ RLGLP ++ A+ A E
Sbjct: 459 NRQGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAEHNE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++ +I +E+ K + E + E + LHK L +++I+E Q+ + +++
Sbjct: 519 VDLMIASLEKSKKRADEELSETESIRKEAEKLHKEL---QQQIIE-LNDQKDKMMEEAEQ 574
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
AA K A+Q+ + RS+ K +H S +
Sbjct: 575 KAAEKLEAAAKEAEQII---RELRSI----------------------KQEH--RSFKEH 607
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
+D + A + K + + ++ GD V V +FG+KG +++ + ++E
Sbjct: 608 ELIDAKKRLGDAMPAFEKSKQPERKTEKKRELKPGDEVKVLTFGQKGALLE-KTGEKEWN 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K +K D+
Sbjct: 667 VQIGILKMKVKEKDL 681
>gi|116073767|ref|ZP_01471029.1| putative DNA mismatch repair protein MutS family [Synechococcus sp.
RS9916]
gi|116069072|gb|EAU74824.1| putative DNA mismatch repair protein MutS family [Synechococcus sp.
RS9916]
Length = 804
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 202/606 (33%), Positives = 293/606 (48%), Gaps = 90/606 (14%)
Query: 59 WDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTG 118
W +LC ++SFA T GR A ++ + S + L + + L G
Sbjct: 25 WPRLCAHLASFASTQPGRRAAKAT--ALPDDLEASRQWLARSIELAGLDGVTEGGLSFQG 82
Query: 119 V-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPL- 176
V DL V ++ + E L V L + L+ + D DL PL
Sbjct: 83 VHDLDAV---LKRCSKGGVADGEELLEVADTLAAARRLRRQI-----VDPDLR----PLC 130
Query: 177 TQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNE 236
T++ + L + + ++E G + D AS AL R Q Q L ++ + ++R
Sbjct: 131 TELFNAVATFPELEQRLKFSLEEGGRVADRASAALAGLRLQWQSLRQQRRDRLQDVMRRW 190
Query: 237 NNESLFLEVSSIHGR--LCIRTGADQLSFKGLLL-SSSSGIGSVIEPLSAVPLNDELQQA 293
+ + ++ HGR L ++ GA KG++ SS+SG +EP + + L + L
Sbjct: 191 SAQLQDTVIAERHGRPVLAVKAGAVG-HCKGMVHDSSASGNTVFVEPQAVIELGNRLAAQ 249
Query: 294 RASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQ 353
+ + E+ VL L+ + D + K+ ++ LD+ ARA Y GG P +
Sbjct: 250 EGRIREEEQRVLAELSTAVGEQHDPLTKLGEVLLLLDLTLARARYGQWLGGVPPRLEADP 309
Query: 354 DMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRK 413
D L + HPLL+ Q K++
Sbjct: 310 DAP--------------------FALEQLRHPLLVWQQKRE------------------- 330
Query: 414 LYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLK 473
YG + VPI I +A RV+ ITGPNTGGKT+ LK
Sbjct: 331 -YGADV-------------------------VPISITVAGDLRVVAITGPNTGGKTVTLK 364
Query: 474 TVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS-- 531
++GLA +MA++GL + +PW V ADIGDEQSL QSLSTFSGH+K+IG I++
Sbjct: 365 SIGLAALMARAGLWLPCQGTPSLPWCALVLADIGDEQSLQQSLSTFSGHVKRIGRILAAL 424
Query: 532 -QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590
Q + +LVLLDE+GAGT+P EGTAL +LL + A+ + LTIATTH GELK LKYS+
Sbjct: 425 DQGATPALVLLDEVGAGTDPSEGTALATALLRSLADR-ARLTIATTHFGELKALKYSDSR 483
Query: 591 FENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA-ASAEINE 649
FENA + FD L PTY++LWG+PGRS+A+ IA RLGL V++ AR L A ++N
Sbjct: 484 FENASVAFDSETLSPTYQLLWGIPGRSNALAIATRLGLDPQVIEQARGLLSPQADGDVNA 543
Query: 650 VIIEME 655
VI +E
Sbjct: 544 VIRGLE 549
>gi|301300876|ref|ZP_07207048.1| recombination and DNA strand exchange inhibitor protein
[Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851475|gb|EFK79187.1| recombination and DNA strand exchange inhibitor protein
[Lactobacillus salivarius ACS-116-V-Col5a]
Length = 786
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 221/788 (28%), Positives = 365/788 (46%), Gaps = 134/788 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ ++ +F TS+G L + Y DE + ++ K G+
Sbjct: 6 LKTLEYDKVKQNLYAFTTTSMGNR--LIDKLEPSSDY-------DEISNSLAQTKDGADI 56
Query: 114 LDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
L + G +L +KS ++ + L E A+ +L+ + + K+ AD
Sbjct: 57 LRIKGGIPVPNLISIKSFLKRLDIGGTLNSKELAAIGRVLRATN----EVNRFFKDLADN 112
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I+ L + +L + K ++ ++ DG + D AS LK R Q+ + E + + +
Sbjct: 113 KIKLEVLFDDVAKLESLPEISKKLLVSIENDGHVTDDASTLLKSIRQQISVTEETIRERL 172
Query: 230 DMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
+ R N++ L V +I R + + S F G++ SSSG +EP V L
Sbjct: 173 NAYTRGTNSKYLSNAVVTIRNERYVLPVKQEYRSKFGGIVHDQSSSGQTLFVEPAVIVEL 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L+Q + + + +L L++++ E+ + LD +NA+A Y+ S T
Sbjct: 233 NNRLRQQQVAEREEINRILEELSKELAPYTHELNNNAKILGMLDFINAKAKYAHSIKAT- 291
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
EP+ SK E +YL + +HPL
Sbjct: 292 ---------------EPILSK------ENDVYLRQVWHPL-------------------- 310
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
L++ V DI I + + +VITGPNTG
Sbjct: 311 --------------------------------LDMKKAVKNDIMIGKDYQAIVITGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+GL +M +SGL+I + E +++ FD +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 339 GKTITLKTLGLVQLMGQSGLYIPAFEESRIGIFDDIFADIGDEQSIEQSLSTFSSHMTNI 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ +SLVL DE+GAGT+P EG AL +S+L+A GS + +ATTH+ ELK +
Sbjct: 399 VEILKGIDEKSLVLFDELGAGTDPQEGAALAISILDAVGAKGSYV-VATTHYPELKAYGF 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
NA MEFD L+PTY++L G+PGRS+A +I++RLGL ++V ARQL S +
Sbjct: 458 ERPNTINASMEFDANTLQPTYRLLIGIPGRSNAFDISQRLGLDKMIVMAARQLTSQDSQD 517
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+NE+I ++ + E R +L + LH + LE Q R+ + + +
Sbjct: 518 LNEMISDLVAKRHDAEEKEIMYRKYLREAEELHHD--------LETNFHQFERQKENMLE 569
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A + A Q+ + + ++++ SA+ ++ + Q + + Q+
Sbjct: 570 QA-------KERANQIVEETKKKSDELISELRKMKMSAASNIEEGSLIDAQGRVNALHQE 622
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
T + K + V++ KQ + PN D V V+S+G++G +++
Sbjct: 623 TNLKK--------NKVLRKAKQQQELH----PN--DDVMVNSYGQRGVLLR--------- 659
Query: 827 VQVGNMKW 834
+ GN W
Sbjct: 660 -KAGNHAW 666
>gi|442804258|ref|YP_007372407.1| MutS2 protein MutS [Clostridium stercorarium subsp. stercorarium
DSM 8532]
gi|442740108|gb|AGC67797.1| MutS2 protein MutS [Clostridium stercorarium subsp. stercorarium
DSM 8532]
Length = 794
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 221/803 (27%), Positives = 375/803 (46%), Gaps = 135/803 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
R+LE+D++ + A ++LG+E L + + Y++ R L ET A+ + + GS
Sbjct: 6 FRILEFDRIIEKLKDRASSTLGKE--LAEKLVPSTDYEEIKRTLRETTDAVTCILRKGSP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSL---RAAIKEDADL 169
L + ++ I+ L P E L + +L+ S L+ + + ++E +
Sbjct: 64 PLG----GIHDIRPYIQRAEAGGMLYPGELLKIADVLRVSRNLKNYVSQDKMELEETNTV 119
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
Y+ + L +R+L + + Q ++ + + D ASPAL R ++ ++ + +
Sbjct: 120 YV-------LCSGLGTDRTLEERLNQAIENEEELSDYASPALAAIRRDIRRMQDAVKDKL 172
Query: 230 DMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVP 285
+ +IR+ N + + V ++ G R I A+ S F GL+ S SG +EP++ V
Sbjct: 173 NSIIRSAQNRKIMQDAVVTLRGDRYVIPVKAEYRSQFPGLVHDVSQSGATIFVEPMAVVE 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQL----DVVNARATYSLS 341
LN+E++Q + + E +L LT ++ +I +ML ++L D V A+A SL
Sbjct: 233 LNNEIRQLKIKEEREVERILTELTGEVA----KISEMLKANVKLLALIDFVFAKARLSLD 288
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
GT EPV +K E I + K HPL
Sbjct: 289 LKGT----------------EPVLNK------ERRIVIKKGRHPL--------------- 311
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
++ A VP+DI + +VIT
Sbjct: 312 -------------------------------------IDPAVVVPVDISLGEDFTTMVIT 334
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ LKT+GL V+M ++GLHI ++E +++ F VFADIGDEQS+ QSLSTFS
Sbjct: 335 GPNTGGKTVTLKTMGLFVLMTQAGLHIPAAENSEMCVFTKVFADIGDEQSIEQSLSTFSA 394
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+ I I+ + SLVL DE+GAGT+P EG AL ++L+ + G + T+ATTH+ EL
Sbjct: 395 HMTNIVGILREVDENSLVLFDELGAGTDPTEGAALAKAILDRLTKRG-IRTMATTHYSEL 453
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K + NAC EFD L+PTY++L G+PGRS+A I+ RLGL +++ A++
Sbjct: 454 KIYAMTTPGVRNACCEFDVETLRPTYRLLIGIPGRSNAFAISLRLGLDEGIIEEAKRFMR 513
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
+ E++ ++++ + + + A L K + R R+ A++ RK
Sbjct: 514 GEDIQFEELLSDIQKNRLETEKERERAYREL-------KEIERLRQ------AAEEQRK- 559
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLT 761
K D + K A+ + +A + + +R ++L + Q + + L
Sbjct: 560 -KTEDEKESILNQARKEARAILANARRQAEEIMERLKELEKAYQQR----NIDREMMELR 614
Query: 762 SNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP---NVGDLVHVSSFGKKGTVIKV 818
N ++T E A + +++ PR + P GD V + + ++GTV++
Sbjct: 615 QNLRKTM---NELDAQMAETIL------PRRGDGKPPENLKPGDTVMIINLNQRGTVLEA 665
Query: 819 EPSKEEIVVQVGNMKWIMKFTDI 841
+++Q G MK M T +
Sbjct: 666 PDKDGNVLIQAGIMKVKMHITQL 688
>gi|336394748|ref|ZP_08576147.1| mutS family ATPase [Lactobacillus farciminis KCTC 3681]
Length = 784
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 227/802 (28%), Positives = 374/802 (46%), Gaps = 144/802 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLW--SINQTYQDSLRLLDETNAAIEMQKH 109
++L+VLE+DK+ ++ + T+ G+ L +L S+ Q RL+D+T
Sbjct: 4 KALKVLEFDKIKAEIAKYLITTRGK-TLLKKLMPMSVESIVQ---RLIDQTK-------- 51
Query: 110 GSCSLDLTGVDLSLVKSAIREVRR-------ASPLRPNEALAVVALLQFSETLQLS--LR 160
G D+ +K I VR+ A+ L+ + L L Q + LQ + L+
Sbjct: 52 -------DGADIIRIKGEI-PVRKLADLHDQANRLKKDGNLNGTELSQIGQVLQNTSELK 103
Query: 161 AAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQM 220
++ D + L + L N L K + + +D+ G + D+AS LK R Q+
Sbjct: 104 EFFEDLKDEQLDLRQLYDLNDNLIDNPELTKHLARSLDDTGRVLDTASEDLKYIRNQITR 163
Query: 221 LERKLYQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSV 277
L ++ M+ R +N + L + ++ R I + + F G++ S+SG
Sbjct: 164 LNDQIRHTMEQYTRGKNTKYLTENLVTLRDDRFVIPVKTEYKTKFGGVVHDQSASGQTLY 223
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
IEP + V +N++L +A+ S E +L L++ ++ +DEI + + Q D++NA+A
Sbjct: 224 IEPQAVVGMNNQLHEAQVSEKAEEIRILNKLSDLVRPQIDEILENNEVLAQFDLINAKAK 283
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
Y+ T EP+ SK + + L A HPL+
Sbjct: 284 YAKEIKAT----------------EPIISK------DHIVDLHDAKHPLI---------- 311
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
P ++ V DI + +
Sbjct: 312 --------------------------------DPDKV----------VANDIKMGEGYKT 329
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKTI +KT+GL +MA++GL I + E +++ FD VF DIGDEQS+ Q+LS
Sbjct: 330 MLITGPNTGGKTITMKTLGLIQLMAQAGLFIPAHEESEIAVFDEVFVDIGDEQSIEQNLS 389
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I NII + + SLVL+DE+GAGT+P EG A+ +++LE A+S + +ATTH
Sbjct: 390 TFSSHMDNIINIIRKVSEHSLVLIDELGAGTDPQEGAAIAIAILEKLAQSHCFI-MATTH 448
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ NA MEFDE LKPTY++L G+PG S+A NIA RLG+ VV +
Sbjct: 449 YPELKIFAYNTPETINASMEFDEKSLKPTYRLLIGIPGASNAFNIAARLGMDKGVVNRGQ 508
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
L S ++N +I ++E + +F + + + L ++++ K+ + + + S+
Sbjct: 509 ALMDGESQDLNNMIADLENRRKEFEQKNDQLKVQLAKNKDVQKDYEKKSDALDKSKNSE- 567
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG-KN 756
I A A +V K+ ++ + + +HK Q + K G KN
Sbjct: 568 ------IQAAKVRANQIVSKARKE----SDKIIEKLHKLEQDGVAVKEDQIIAAKTGLKN 617
Query: 757 QHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVI 816
H + A + V++ R KR + VGD V + + GT++
Sbjct: 618 LH--------------QDEAVKKNRVLR------RNKRRQQLKVGDTVKSLQYDQIGTIV 657
Query: 817 KVEPSKEEIVVQVGNMKWIMKF 838
+ + E VQ+G +K MKF
Sbjct: 658 R-KNKNNEFEVQLGILK--MKF 676
>gi|345017977|ref|YP_004820330.1| MutS2 protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033320|gb|AEM79046.1| MutS2 protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 791
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 191/627 (30%), Positives = 306/627 (48%), Gaps = 99/627 (15%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGS 111
+++ LE+DK+ + + + LG++ I + ++ R LD N AI + +G
Sbjct: 9 AIKSLEFDKIVEFIVGYCDSDLGKQKASN--IVIKKDIEEIERELDLLNEAISFISSYGG 66
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
S + + I++ + S L E L + L ++ + +++D ++
Sbjct: 67 ISFAFEDI-----RDYIKKAQIDSVLYNQELLKIKKFLNLVSQIKGYFKNL--QESDRFV 119
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
R + ++ + + L K I ++ + I D ASP LK R Q + K+ ++
Sbjct: 120 RLKEYDKKVLPI---KDLEKRIENIIISEDEIADDASPMLKSLRRQKSSINEKIRATLNS 176
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
+I E ++ GR + + S FKG++ SSSG IEP+ V LN+E
Sbjct: 177 IISTRQKELQEPIITVRQGRYVVPVKQEYRSTFKGIVHDQSSSGATLFIEPMQVVDLNNE 236
Query: 290 LQQARASVTKAEEDVLLALTEKM----QVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
L+Q + + +LL L++++ Q+ D+IE + + LD + A+A YSL
Sbjct: 237 LRQVELKERQEIQRILLELSQEVKKYSQILFDDIEIVSD----LDFIFAKAKYSLKLKAV 292
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
P + ++ + I L KA HPL+ Q
Sbjct: 293 RPEL-------NTMGY---------------INLKKARHPLINQ---------------- 314
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
E+ P+ DI+I + LVITGPNT
Sbjct: 315 ----------------------------------EVIVPI--DIYIGDQFNTLVITGPNT 338
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKTVGL +MA +GL+I + E ++V F+ VF DIGDEQS+ QSLSTFS H+
Sbjct: 339 GGKTVTLKTVGLLTLMAMAGLNIPAEERSQVSIFEEVFVDIGDEQSIEQSLSTFSSHMTN 398
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I +I+ + LVLLDE+GAGT+P+EG AL MS+L+ + G+ TIATTH+ ELK
Sbjct: 399 IVSILQKVNKNCLVLLDELGAGTDPIEGAALAMSILDTLHKIGA-KTIATTHYSELKQYA 457
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
ENA +EFD LKPTYK++ G+PG+S+A I++RLGLP +++NAR+ +
Sbjct: 458 LKAPGVENASVEFDVETLKPTYKLIIGLPGKSNAFEISKRLGLPQQIIENARKYISGEAL 517
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFL 672
+ ++I ++E K + LE ++ FL
Sbjct: 518 KFEDIIADVES-KRRELEKANQEIAFL 543
>gi|288553660|ref|YP_003425595.1| recombination and DNA strand exchange inhibitor protein [Bacillus
pseudofirmus OF4]
gi|288544820|gb|ADC48703.1| MutS2 recombination and DNA strand exchange inhibitor protein
[Bacillus pseudofirmus OF4]
Length = 788
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 227/799 (28%), Positives = 373/799 (46%), Gaps = 129/799 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
LRVLE++K+ + +SLG++ L + +D R ET+ G+
Sbjct: 5 LRVLEYNKMKQQLQEHVASSLGKQ--LVHTLKPHVDLEDVARSQKETS-------EGATV 55
Query: 114 LDLTG-VDLSLVKSAIREVRRA---SPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
L L G V L + +RA L E + + + + L+ + ++E+
Sbjct: 56 LRLKGHVPLGGIFDVTAHAKRAQIGGALAAGELIEIASTIYGGRQLKKFIETMVEEEELE 115
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
TQ I L + +++ Q +D++G + DSASPAL+ R QV+ E + +
Sbjct: 116 LPHLYYYTQQIEPL---TDVERAVKQCIDDNGHVLDSASPALRTIRQQVRSYESSVRSKL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVP 285
+ + R+ N + + + V+ + R I + S F G++ S+SG IEP + V
Sbjct: 173 ESITRSSNTQKMLSDAIVTIRNDRFVIPVKQEYRSAFGGIVHDQSASGATLFIEPQAIVT 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
+N++L++A+ E +L L+ + + I L + QLD + ++A Y+ T
Sbjct: 233 INNQLREAKVKEAHEVERILAELSALISEHAEAILINLEQLAQLDFIFSKAHYAKRIKAT 292
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
+P + ++R + I+L +A HPLL A
Sbjct: 293 APLL---------------------NDRGY-IHLKRARHPLL-----------------A 313
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
+ E+ VPID+ + + R L+ITGPNT
Sbjct: 314 DEEV-----------------------------------VPIDVILGDEYRSLIITGPNT 338
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKTVGL +MA+SGLH+ E ++V F +FADIGDEQS+ QSLSTFS H+
Sbjct: 339 GGKTVTLKTVGLLTLMAQSGLHVPVDEESEVAVFKQIFADIGDEQSIEQSLSTFSSHMTN 398
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I +I+ + QSLVL DE+GAGT+P EG AL +S+L+ + G+ + +ATTH+ ELK
Sbjct: 399 IVDILGKVDFQSLVLFDELGAGTDPTEGAALAISILDDVYKRGACV-VATTHYSELKGYA 457
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
Y+ + NA +EFD L+PTY++L GVPGRS+A I+ RLGL ++++A++ + +
Sbjct: 458 YNREGAMNASVEFDVETLRPTYRLLIGVPGRSNAFAISRRLGLDERIIESAKEQIDSETN 517
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKIS 705
+I +I +E + EA + L L+ +E Q+ R +++
Sbjct: 518 QIENMIASLETSQKSAESEWAEASEIRKKAETLRNELMAQ----IEQLEEQKERVLKEAE 573
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTK---VGKNQHVLTS 762
D A A SA + + +LR + L+ + + +H+ +
Sbjct: 574 DKAKAA-----------VESAKEEAEFI---IGELREMQKEGLNVKEHQLIDAKKHLEEA 619
Query: 763 NFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSK 822
+ T K A + + IK GD V V SFG+KG VI+ + ++
Sbjct: 620 APKLTAKQKKVKKEAARAKAKQTIK------------AGDDVKVLSFGQKGHVIE-QVNE 666
Query: 823 EEIVVQVGNMKWIMKFTDI 841
+E VQ+G MK +K D+
Sbjct: 667 KEYNVQIGIMKMKVKADDL 685
>gi|344996322|ref|YP_004798665.1| MutS2 protein [Caldicellulosiruptor lactoaceticus 6A]
gi|343964541|gb|AEM73688.1| MutS2 protein [Caldicellulosiruptor lactoaceticus 6A]
Length = 786
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 221/807 (27%), Positives = 388/807 (48%), Gaps = 149/807 (18%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTY-QDSLRLLDETNAAIEMQKHGS 111
+ R LE+D++ + + A + + + S ++ + Q L ++E I + K+G
Sbjct: 5 TFRALEYDRILEMLMTAAHSEPAKRYFQNLVPSSDKDFIQKELDKVEE--CFIYILKYGR 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ S + +++ R + L P+E L V +L+ S+ ++ L A D+
Sbjct: 63 ----LPALEFSDISLILKKARAQAILTPHEILEVEKVLKLSQEVRSYLANA---DSSY-- 113
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + +LF + +I I Q I D+ASP LK+ R +++ LE ++ ++
Sbjct: 114 ----LKTIRERLFNLKEIIARIDQTFLTPEEILDTASPRLKEIRDRIRRLEARIRDELNK 169
Query: 232 LIRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLN 287
+IR+ + E + ++ G +L + A+ + S KG++ S++G +EP V ++
Sbjct: 170 MIRDPKIQRFLQEPIITVRGDKLLLPVKAEHKDSIKGIIHDQSATGATLFVEPFVCVEIS 229
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
++++ AR+ + E +L L++ + +EI++ + +LD++ +A ++ F +
Sbjct: 230 NQIRVARSEEKEEIERILQELSQLISDSYNEIKQNFESLSELDILFTKAQWAHQFRAS-- 287
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+P+ + I L KA HPL+ K+K
Sbjct: 288 --------------KPILNTAG------YINLKKARHPLI---EKEKV------------ 312
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
VPID+ + ++ VLVITGPNTGG
Sbjct: 313 -------------------------------------VPIDVHLGKEFDVLVITGPNTGG 335
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT+GL ++A+SG+ + + E ++V F +FADIGDEQS+ QSLSTFS H+K I
Sbjct: 336 KTVTLKTIGLFCLLAQSGIFLPADEGSEVCVFSKIFADIGDEQSIIQSLSTFSAHMKNII 395
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
I + S +LVLLDEIG+GT+P EG AL ++L+ + GS + +ATTH+GELKT
Sbjct: 396 EITQNADSSTLVLLDEIGSGTDPEEGAALAKAILKFLFKKGSKV-VATTHYGELKTFAQQ 454
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
+ FENA EFD LKPTY++L G+PG S+A+ I+ LGL +V+ A+ + E+
Sbjct: 455 EERFENASCEFDINTLKPTYRLLIGIPGMSNALYISSNLGLKEEIVELAKSYMSKKTLEL 514
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL-------LRTRRKILEHCASQRFRK 700
++I EMER + + E + A + + NL K L +++I E + +
Sbjct: 515 TDIINEMERKRKELEETLENANKLKIEAENLKKTLEEERRRFEAEKQRIKERASREAREF 574
Query: 701 VQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVL 760
VQ++ D V K ++LR A +SL
Sbjct: 575 VQRVEDE-------------------------VEKLFKELRKIA-ESLK----------- 597
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVK---RTELPN---VGDLVHVSSFGKKGT 814
++ + ++E ++VK I+Q+ + + +++LP +G V+V SF +G
Sbjct: 598 ----EKEMLKQLEEKKREYENLVKSIEQASQKEEKLQSKLPENLRLGQKVYVKSFDAEGF 653
Query: 815 VIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V + SK + V++G MK + +D+
Sbjct: 654 VESLPDSKGNLTVRIGIMKLSVNISDV 680
>gi|389819500|ref|ZP_10209368.1| MutS2 protein [Planococcus antarcticus DSM 14505]
gi|388463298|gb|EIM05662.1| MutS2 protein [Planococcus antarcticus DSM 14505]
Length = 786
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 232/802 (28%), Positives = 378/802 (47%), Gaps = 137/802 (17%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
+LR LE+ K+ V+ + +SLG+ L S + ++E N +E G+
Sbjct: 6 ALRTLEFYKIRDEVARYCTSSLGKAHVDKLLPSTD---------INEVNRLLEQMDEGAQ 56
Query: 113 SLDL-TGVDLSLVKSAIREVRRA---SPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
L + V + + RRA L P E + V + ++ S L+ IKE+A
Sbjct: 57 VLRVKNNVPMGGIFDIRLHARRAQIGGSLSPMELMEVSSTIRASRILR-QFFETIKEEAV 115
Query: 169 LYI-RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
+ I F+ + + L V L +I +D++G + DSAS L+ R Q++ E ++ +
Sbjct: 116 IQIPHFLEKKESMPILTV---LEHAINICIDDNGGVLDSASSELRSIRQQLRTQESRVRE 172
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSA 283
++ L+R +N + + V+ + R I + + G ++ SSSG IEP
Sbjct: 173 RLESLVRGKNASKMLSDSIVTIRNDRFVIPVKQEYRNHYGGIVHDQSSSGQTLFIEPDVV 232
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V N+E+++ + + + +LL L+ ++Q E+ ++ + ++D++ A+A Y +
Sbjct: 233 VQANNEVRRLKMKEKEEIDRILLMLSAQVQEVAHELFLLVEVLGEIDLILAKAKYGAAHK 292
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
GT P + E I L KA HPL+ K + D+E
Sbjct: 293 GTKPTM----------------------NTEGYINLQKARHPLI-----PKDEVVPNDIE 325
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
+GG+ +VITGP
Sbjct: 326 -----------FGGDIT------------------------------------AIVITGP 338
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKTVGL+ +MA+SGL + + + +++ FD +FADIGDEQS+ QSLSTFS H+
Sbjct: 339 NTGGKTVTLKTVGLSTLMAQSGLPVPALDGSELSVFDQIFADIGDEQSIEQSLSTFSSHM 398
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I +I+++ SLV+ DE+GAGT+P EG AL +SLL+ G+ + IATTH+ ELK
Sbjct: 399 VNIVDILTKFDENSLVIFDELGAGTDPQEGAALAISLLDEVHGRGARV-IATTHYPELKA 457
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
Y+ NA +EFD L PTY++L GVPGRS+A I++RLGLP ++ +A+ G
Sbjct: 458 YGYNRPGVANASVEFDVETLSPTYRLLIGVPGRSNAFEISKRLGLPEHIINHAKSFTGTD 517
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
S ++ +I +E+ + + + + + L S L K L K LE Q+ R +K
Sbjct: 518 SKAVDSMIASLEKSRREAEQDAEQTKKILSESEQLKKELA----KQLEEYEQQKERLEEK 573
Query: 704 ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKN--QHVLT 761
A AR +V ++ + S R + QL S+S H K ++ L
Sbjct: 574 ---AKEKARKIVGQARVEAEAVISDLRKM------QLNQSSSVKEHELIDAKKRLENALP 624
Query: 762 SN--FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVE 819
N ++ D E P A+ D V V SFG+KGT+++ +
Sbjct: 625 QNRILKKAAKDNAEKPLKAN----------------------DEVKVISFGQKGTLVE-K 661
Query: 820 PSKEEIVVQVGNMKWIMKFTDI 841
SK E +VQ+G +K + +D+
Sbjct: 662 VSKNEWIVQIGILKMKLPESDL 683
>gi|123967774|ref|YP_001008632.1| DNA mismatch repair protein MutS family protein [Prochlorococcus
marinus str. AS9601]
gi|123197884|gb|ABM69525.1| putative DNA mismatch repair protein MutS family [Prochlorococcus
marinus str. AS9601]
Length = 803
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 203/651 (31%), Positives = 327/651 (50%), Gaps = 108/651 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ES+ +LEWD L +SSFA T +G+++ L+ + I Y+ S RLL+ET E++K+
Sbjct: 19 ESINLLEWDSLKTHLSSFASTEMGKQSILS--FVIPSEYEASKRLLNETVEINELEKNLD 76
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
S+ +GV D+S R + LL+ ++T+ AA + +
Sbjct: 77 KSISFSGVFDIS---------RNIEICSKGGVITSSELLEIAKTI-----AAARNLKKIL 122
Query: 171 IRF--MPLTQMIMQLFVNRSLIKSIMQV-VDEDGSIKDSASPALKQSRGQV--QMLERKL 225
+ F P + ++ I++I + ++ +G I D+AS L R + + LERK+
Sbjct: 123 LDFEQRPYISSFTKNLIDHQNIETIFKKGIESNGRISDNASNELSILRKEFLSKKLERKI 182
Query: 226 YQLMDMLIRNENNESLFLEVSSI---HGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEP 280
L++ I+ +L+ ++I +GR + + + FKG++ SSSSG EP
Sbjct: 183 --LVEKFIQKN---LAYLQDTTIGDRYGRPVLAVKVNYVDKFKGIIHDSSSSGNTVYFEP 237
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
S V +++ A +T E +L + + + + +M + +++L+ R+ YS
Sbjct: 238 ESVVTKGNKIASLEARITAEEFKLLKKWSHVVSDNSKNLIEMASILLRLENALTRSRYSK 297
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
GG +P + P+ S + S HPLL+ +HK+K
Sbjct: 298 WIGGKTP----------TFEKNPIISLIGFS------------HPLLIWEHKKKG----- 330
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
+P PV +D +I R +V+ I
Sbjct: 331 -----------------------------APP-----------PVAVDFYINRNIKVVAI 350
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT LK +GL+++MA++GL I S+ +P+ +++ DIGD QSL ++LSTFS
Sbjct: 351 TGPNTGGKTAALKGLGLSLLMARAGLLIPSTNNPIIPFCPNIYVDIGDNQSLEENLSTFS 410
Query: 521 GHLKQIGNIISQ---STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
GH+ +I I+ S+VLLDEIG+GT+PLEG+AL M+LL+ FA S +T+ATTH
Sbjct: 411 GHISRIKGILDSLDYKKGLSVVLLDEIGSGTDPLEGSALAMALLKEFANK-SDITLATTH 469
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL-PGIVVQNA 636
+G++K LKY++ FEN + FDE LKP Y + WG+PGRS+A++I++R+GL I+ + A
Sbjct: 470 YGDIKALKYNDSRFENVSVAFDEESLKPKYILNWGIPGRSNALSISKRIGLDESILNEAA 529
Query: 637 RQLYGAASAEINEVI--IEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRT 685
L IN +I +E ER K Q A + + LH L R
Sbjct: 530 NYLKPKEVDNINSIIKGLEEERIKQQ--NSAEAAAELIARTEILHDELKRN 578
>gi|33860777|ref|NP_892338.1| DNA mismatch repair protein MutS family protein [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|33633719|emb|CAE18676.1| putative DNA mismatch repair protein MutS family [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 803
Score = 256 bits (653), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 227/797 (28%), Positives = 376/797 (47%), Gaps = 142/797 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ES+ +LEWD L +SSFA T +G A L I Y+ S RLL ET E++K
Sbjct: 19 ESISLLEWDNLKIQLSSFASTKMGENAILES--EIPTEYEISRRLLQETIEINELEKTLD 76
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
S+ +GV D+S I + + +E LL+ +ET+ +A K+ +
Sbjct: 77 KSISFSGVFDIS---KNIEICSKGGVINSSE------LLEIAETI-----SAAKDLKKIL 122
Query: 171 IRF--MPLTQMIMQLFVNRSLIKSIMQV-VDEDGSIKDSASPALKQSRGQV--QMLERKL 225
+ F P + ++ + I+ I++ ++ +G I D AS L R + + ER++
Sbjct: 123 LDFEARPFISSFLNRLIDHNQIEKILKNGIESNGRISDRASQKLANLRQDLLSKKSERRI 182
Query: 226 YQLMDMLIRNENNESLFLEVSSIHGR--LCIRTGADQLSFKGLLL-SSSSGIGSVIEPLS 282
L+D I+ N + +GR + I+ + FKG++ SS+SG +EP S
Sbjct: 183 --LVDKFIQKNINYIQDTIIGDRYGRPVVAIKVQFGE-KFKGIIHDSSASGNTIYLEPES 239
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
V +++ A V E +L ++ + + + +M + +++ + R+ YS
Sbjct: 240 IVFKGNKIASMEARVAGEEFKLLKEWSQIVSDNDKSLIEMSDILLRTEHALIRSRYSNWI 299
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
GG +P + + P+ + + S HPLL+ ++K+K
Sbjct: 300 GGNAPIV----------ENNPIVNLIGFS------------HPLLIWENKKK-------- 329
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
E PV ID I R T+V+ ITG
Sbjct: 330 -------------------------------------EAPKPVSIDFHINRNTKVVAITG 352
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKT+ LK +G+A++MA+SGL I S + +P+ ++F DIGD+QSL +LSTFSGH
Sbjct: 353 PNTGGKTVALKGLGIALLMARSGLFIPSIKNPIIPFCPNIFVDIGDDQSLEGNLSTFSGH 412
Query: 523 LKQIGNIISQSTSQ---SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579
+ +I NI+ ++ S+VLLDEIG+GT+P EGTAL ++LL+ FA + S +T+ATTH+G
Sbjct: 413 ILRIRNILESLNNKKGLSVVLLDEIGSGTDPSEGTALAIALLKEFA-TLSDITLATTHYG 471
Query: 580 ELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 639
++K LKYS+D FEN + FDE KP Y + WG+PGRS+A++I+ R+G+ ++ A
Sbjct: 472 DIKALKYSDDRFENVSVAFDEESFKPRYTLNWGIPGRSNALSISRRIGIDEKILNEAANY 531
Query: 640 YGAASAE-INEVI--IEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQ 696
E IN +I +E ER K Q EA + + LH E ++
Sbjct: 532 LKPKEVENINSIIKGLEDERIKQQ--NSAEEAAELIARTEILHD----------EIKSNY 579
Query: 697 RFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKN 756
F+K ++A I S K ++ + + + +L+ K Q N
Sbjct: 580 EFQK----NNAEKIQESEKQKLSKYIRAAKKEVINLIKKLKDQ----------------N 619
Query: 757 QHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVI 816
+ S + ++E +++ K+I SP+ +GD + + S G +I
Sbjct: 620 ANGEDSRLIGIRLKEIEKEHLTQTNINKEISWSPK--------IGDFIKIKSLNSTGQII 671
Query: 817 KVEPSKEEIVVQVGNMK 833
++ V+ G+ +
Sbjct: 672 DIDRKARSFEVKCGSFR 688
>gi|385840651|ref|YP_005863975.1| MutS2 protein [Lactobacillus salivarius CECT 5713]
gi|300214772|gb|ADJ79188.1| MutS2 protein [Lactobacillus salivarius CECT 5713]
Length = 786
Score = 255 bits (651), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 221/788 (28%), Positives = 364/788 (46%), Gaps = 134/788 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ ++ +F TS+G+ L + Y DE + ++ K G+
Sbjct: 6 LKTLEYDKVKQNLYAFTTTSMGKR--LIDKLEPSSDY-------DEISNSLAQTKDGADI 56
Query: 114 LDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
L + G +L +KS ++ + L E A+ +L+ + + K+ AD
Sbjct: 57 LRIKGGIPVPNLISIKSFLKRLDIGGTLNSKELAAIGRVLRATN----EVNRFFKDLADN 112
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I L + +L + K ++ ++ DG + D AS LK R Q+ + E + + +
Sbjct: 113 KIELEVLFDDVAKLESLPEISKKLLVSIENDGHVTDDASTLLKSIRQQISVTEETIRERL 172
Query: 230 DMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
+ R N++ L V +I R + + S F G++ SSSG +EP V L
Sbjct: 173 NAYTRGTNSKYLSNAVVTIRNERYVLPVKQEYRSKFGGIVHDQSSSGQTLFVEPAVIVEL 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L+Q + + + +L L++++ E+ + LD +NA+A Y+ S T
Sbjct: 233 NNRLRQQQVAEREEINRILEELSKELAPYTHELNNNAKILGMLDFINAKAKYAHSIKAT- 291
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
EP+ SK E +YL + +HPL
Sbjct: 292 ---------------EPILSK------ENDVYLRQVWHPL-------------------- 310
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
L + V DI I + + +VITGPNTG
Sbjct: 311 --------------------------------LGMKKAVKNDIMIGKDYQAIVITGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+GL +M +SGL+I + E +++ FD +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 339 GKTITLKTLGLVQLMGQSGLYIPAFEESRIGIFDDIFADIGDEQSIEQSLSTFSSHMTNI 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ +SLVL DE+GAGT+P EG AL +S+L+A GS + +ATTH+ ELK +
Sbjct: 399 VEILKGIDEKSLVLFDELGAGTDPQEGAALAISILDAVGAKGSYV-VATTHYPELKAYGF 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
NA MEFD L+PTY++L G+PGRS+A +I++RLGL ++V ARQL S +
Sbjct: 458 ERPNTINASMEFDANTLQPTYRLLIGIPGRSNAFDISQRLGLDKMIVMAARQLTSQDSQD 517
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+NE+I ++ + E R +L + LH + LE Q R+ + + +
Sbjct: 518 LNEMISDLVAKRHDAEEKEIMYRKYLREAEELHHD--------LETNFHQFERQKENMLE 569
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A + A Q+ + + ++++ SA+ ++ + Q + + Q+
Sbjct: 570 QA-------KERANQIVEETKKKSDELISELRKMKMSAASNIEEGSLIDAQGRVNALHQE 622
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
T + K + V++ KQ + PN D V V+S+G++G +++
Sbjct: 623 TNLKK--------NKVLRKAKQQQELH----PN--DDVMVNSYGQRGVLLR--------- 659
Query: 827 VQVGNMKW 834
+ GN W
Sbjct: 660 -KAGNHAW 666
>gi|312793836|ref|YP_004026759.1| muts2 family protein [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180976|gb|ADQ41146.1| MutS2 family protein [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 786
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 223/808 (27%), Positives = 392/808 (48%), Gaps = 151/808 (18%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTY-QDSLRLLDETNAAIEMQKHGS 111
+ R LE+D++ + + A + + + S ++ + Q L ++E I + K+G
Sbjct: 5 TFRALEYDRILEMLMTAAHSEPAKRYFQNLVPSSDKDFIQKELDKVEE--CFIYILKYGR 62
Query: 112 C-SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
+L+ + D+SL+ +++ R + L P+E L V +L+ S+ ++ L A D+
Sbjct: 63 PPALEFS--DISLI---LKKARAQAILTPHEILEVEKVLKLSQEVRSYLANA---DSSY- 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
L + +LF + +I I Q I D+ASP LK+ R +++ LE ++ ++
Sbjct: 114 -----LKTIQERLFNLKEIIARIDQTFLTPEEILDTASPRLKEIRDRIRRLEARIRDELN 168
Query: 231 MLIRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+IR+ + E + ++ G +L + A+ + S KG++ S++G +EP V +
Sbjct: 169 KMIRDPKIQRFLQEPIITVRGDKLLLPVKAEHKDSIKGIIHDQSATGSTLFVEPFVCVEI 228
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
+++++ AR+ + E +L L++ + +EI++ + +LD++ +A ++ F +
Sbjct: 229 SNQIRVARSEEKEEIERILQELSQLISDSYNEIKQNFESLSELDILFTKARWAHQFRAS- 287
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
+P+ + I L KA HPL+ K+K
Sbjct: 288 ---------------KPILNTAG------YINLKKARHPLI---EKEKV----------- 312
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
VPID+ + ++ VLVITGPNTG
Sbjct: 313 --------------------------------------VPIDVHLGKEFDVLVITGPNTG 334
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++A+SG+ + + E ++V F +FADIGDEQS+ QSLSTFS H+K I
Sbjct: 335 GKTVTLKTIGLFCLLAQSGMFLPADEGSEVCVFSKIFADIGDEQSIIQSLSTFSAHMKNI 394
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I + S +LVLLDEIG+GT+P EG AL ++L+ + GS + +ATTH+GELKT
Sbjct: 395 IEITQNADSSTLVLLDEIGSGTDPEEGAALAKAILKFLFKKGSKV-VATTHYGELKTFAQ 453
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ FENA EFD LKPTY++L G+PG S+A+ I+ LGL +V+ A+ + E
Sbjct: 454 QEERFENASCEFDINTLKPTYRLLIGIPGMSNALYISSNLGLKEEIVELAKSYMSKKTLE 513
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL-------LRTRRKILEHCASQRFR 699
+ ++I EMER + + E + A + + NL K L +++I E + +
Sbjct: 514 LTDIINEMERKRKELEETLENANKLKIEAENLKKTLEEERRRFEAEKQRIKERASREARE 573
Query: 700 KVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHV 759
VQ++ D V K ++LR A +SL
Sbjct: 574 FVQRVEDE-------------------------VEKLFKELRKIA-ESLK---------- 597
Query: 760 LTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVK---RTELPN---VGDLVHVSSFGKKG 813
++ + ++E ++VK I+Q+ + + +++LP +G V+V SF +G
Sbjct: 598 -----EKEMLKQLEEKKREYENLVKSIEQASQKEEKLQSKLPENLRLGQKVYVKSFDAEG 652
Query: 814 TVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V + SK + V++G MK + +D+
Sbjct: 653 FVESLPDSKGNLTVRIGIMKLSVNISDV 680
>gi|417810043|ref|ZP_12456724.1| DNA mismatch repair protein [Lactobacillus salivarius GJ-24]
gi|335350967|gb|EGM52463.1| DNA mismatch repair protein [Lactobacillus salivarius GJ-24]
Length = 786
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 203/670 (30%), Positives = 319/670 (47%), Gaps = 105/670 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ ++ +F TS+G+ L + Y DE ++ K G+
Sbjct: 6 LKTLEYDKVKQNLYAFTTTSMGKR--LIDKLEPSSDY-------DEIANSLSQTKDGADI 56
Query: 114 LDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
L + G +L +KS ++ + L E A+ +L+ + + K+ AD
Sbjct: 57 LRIKGGIPVPNLISIKSFLKRLDIGGTLNSKELAAIGRVLRATN----EVNRFFKDLADN 112
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I+ L + +L + K ++ ++ DG + D AS LK R Q+ + E + + +
Sbjct: 113 KIKLEVLFDDVAKLESLPEISKKLLVSIENDGHVTDDASTLLKSIRQQISVTEETIRERL 172
Query: 230 DMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
+ R N++ L V +I R + + S F G++ SSSG +EP V L
Sbjct: 173 NSYTRGTNSKYLSNAVVTIRNERYVLPVKQEYRSKFGGIVHDQSSSGQTLFVEPAVIVEL 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L+Q + + + +L L+E++ E+ + LD NA+A Y+ S T
Sbjct: 233 NNRLRQQQVAEREEINRILEELSEELAPYTHELNNNAKILGMLDFTNAKAKYAHSIKAT- 291
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
EP+ SK E +YL + +HPL
Sbjct: 292 ---------------EPILSK------ENDVYLRQVWHPL-------------------- 310
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
L++ V DI I + + +VITGPNTG
Sbjct: 311 --------------------------------LDMKKAVKNDIMIGKDYQAIVITGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+GL +M +SGL+I + E +++ F ++FADIGDEQS+ QSLSTFS H+ I
Sbjct: 339 GKTITLKTLGLVQLMGQSGLYIPAFEESRIGIFGNIFADIGDEQSIEQSLSTFSSHMTNI 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ +SLVL DE+GAGT+P EG AL +S+L+A GS + +ATTH+ ELK +
Sbjct: 399 VEILKDIDEKSLVLFDELGAGTDPQEGAALAISILDAVGAKGSYV-VATTHYPELKAYGF 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
NA MEFD L+PTY++L G+PGRS+A +I++RLGL ++V ARQL S +
Sbjct: 458 ERPNTINASMEFDVNTLQPTYRLLIGIPGRSNAFDISQRLGLDKMIVMAARQLTSQDSQD 517
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL-------LRTRRKILEHC---ASQ 696
+NE+I ++ + E R +L + LH +L R + +LE A+Q
Sbjct: 518 LNEMISDLVAKRHDAEEKEITYRKYLREAEELHHDLEANFHQFERQKENMLEQAKEKANQ 577
Query: 697 RFRKVQKISD 706
+ +K SD
Sbjct: 578 IVEETKKKSD 587
>gi|418324592|ref|ZP_12935826.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus pettenkoferi VCU012]
gi|365225279|gb|EHM66524.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus pettenkoferi VCU012]
Length = 783
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 226/793 (28%), Positives = 381/793 (48%), Gaps = 131/793 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
+SL VLE+DK+ V A + LG+ ++++ + +DET+ ++ +
Sbjct: 4 KSLDVLEFDKIKAMVEQEAVSDLGQVKAREMSPQVDRST--VIFQMDETDEIAQI--YNK 59
Query: 112 CSL-DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
L L+G L+ +K IR + L E + L+Q + + A + ED +
Sbjct: 60 LRLPSLSG--LAQIKPLIRRAQIGGVLNVTELNTIKRLIQVQNQFK-TFYAQLLEDDEEV 116
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+ + L + + +L V L ++I D + D AS L+ R ++ +++ Q +D
Sbjct: 117 VHYPILHERMNELPVLTDLYRTIHDKCDAH-DLYDHASTTLQSIRSKISSTSQRIRQNLD 175
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
++++++N+ + V+ + R I A+ + F G++ SSSG IEP S V +
Sbjct: 176 RIVKSQSNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSSSGQTLYIEPSSVVEM 235
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDE--IEKMLNGIIQLDVVNARATYSLSFGG 344
N+++ + R E +L LT ++ D D I + + G Q+D + A+A Y+
Sbjct: 236 NNQISRLRNDEAVERERILTELTAEVAADADGCLIAEQIMG--QIDFLTAKARYARKIKA 293
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
T P + ++YLPKA+HPLL Q +
Sbjct: 294 TKPEF----------------------TEDRSVYLPKAFHPLLDQ-----------ETVV 320
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
ANT I A ++ITGPN
Sbjct: 321 ANT-----------------------------------------IEFAEDVETVIITGPN 339
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKT+GL ++MA++GL I + + +K+ F++V+ DIGDEQS+ QSLSTFS H+K
Sbjct: 340 TGGKTVTLKTLGLIIIMAQAGLLIPTLDGSKLGIFENVYCDIGDEQSIEQSLSTFSSHMK 399
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I +I+ ++T SL+L DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH+ ELK
Sbjct: 400 NIVSILEEATQNSLILFDELGAGTDPSEGAALAMSILDYVHDIGSLV-MATTHYPELKAY 458
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G
Sbjct: 459 SYNREGVMNASVEFDVNTLSPTYKLLMGVPGRSNAFDISKKLGLGMKIISKAKTMIGHDE 518
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKIL---EHCASQRFRKV 701
EIN +I +E+ + E E L +++ H +L + +K +H ++ K
Sbjct: 519 QEINNMIESLEKNSKRVDEQRIELDRLLREAQDTHDDLEQHYKKFKNYEQHLMNEARDKA 578
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLT 761
+ AA K A Q+ + L H R ++ L + K +H L
Sbjct: 579 NQRVKAAT-------KEADQIL------KDLRHMRDKKGADVKEHEL----IDKKKH-LE 620
Query: 762 SNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPS 821
+++ S+ KD+K+ ++ + + GD V V ++G+KG V+++
Sbjct: 621 DQYEE-------------KSLKKDVKK----QKWDEIHAGDEVKVLTYGQKGEVLEL-VG 662
Query: 822 KEEIVVQVGNMKW 834
+E VVQ+G +K
Sbjct: 663 DDEAVVQMGIIKM 675
>gi|160878313|ref|YP_001557281.1| MutS2 family protein [Clostridium phytofermentans ISDg]
gi|229486372|sp|A9KR74.1|MUTS2_CLOPH RecName: Full=MutS2 protein
gi|160426979|gb|ABX40542.1| MutS2 family protein [Clostridium phytofermentans ISDg]
Length = 796
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 224/816 (27%), Positives = 375/816 (45%), Gaps = 157/816 (19%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREAT-----LTQLWSINQTYQDSLRLLDETNAAIEM 106
++LR LE+ K+ +S+ A +SLGRE L +L I Q Q++ T+A +
Sbjct: 4 KALRTLEYHKIIEKLSALAGSSLGREKCHQLLPLVKLEDIVQMQQET------TDALTRL 57
Query: 107 QKHGSCSLDLTGVDLSLVKSAIREVRRA-SPLRPNEALAVVALLQFSETLQLSLRAA--- 162
G+ S S I ++R L +L LL+ S L +LRA
Sbjct: 58 YAKGTLSF-----------SGIPDIRDTLMRLEIGASLGAGELLKISSVLTATLRAKNYG 106
Query: 163 --------IKEDAD--LYIRFM---PLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASP 209
+E A L RF PL+ +N + + I+ + I D ASP
Sbjct: 107 YNQKNNEETEEAAQDTLTERFHLLEPLSP------INNEIRRCIIS----EEEIADDASP 156
Query: 210 ALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGL 266
LK R Q+++ K+++ + ++ + + + + + ++ +GR C+ + + +F+G+
Sbjct: 157 GLKSVRRQIKITNDKIHESLGSILNSASTKGMLQDAIITMRNGRYCLPIKQEYKNTFQGM 216
Query: 267 LLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNG 325
+ SS+G + IEP++ V LN+EL + + E +L L+ + + ++
Sbjct: 217 MHDQSSTGSTAFIEPMAIVKLNNELAELAVREQEEIEKILAELSNLVATEKYNLKYNQTT 276
Query: 326 IIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHP 385
+ +LD + ARA L ++MK S H + R + I + K HP
Sbjct: 277 LAELDFIFARAG-------------LSKNMKASQPH--------FNNRHY-INIKKGRHP 314
Query: 386 LLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV 445
L + P ++ V
Sbjct: 315 L------------------------------------------IDPKKV----------V 322
Query: 446 PIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFAD 505
PIDI+ K +LVITGPNTGGKT+ LKTVGL +M ++GLHI + + +++ F+ V+AD
Sbjct: 323 PIDIYFGDKFDLLVITGPNTGGKTVSLKTVGLFTLMGQAGLHIPAFDGSELSIFEEVYAD 382
Query: 506 IGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565
IGDEQS+ QSLSTFS H+ +I+ + SLVL DE+GAGT+P EG AL M++L ++
Sbjct: 383 IGDEQSIEQSLSTFSSHMTNTVSILEHANENSLVLFDELGAGTDPTEGAALAMAIL-SYL 441
Query: 566 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAER 625
+ T+ATTH+ ELK S D NAC EF L+PTY++L G+PG+S+A I+ +
Sbjct: 442 HQRKIRTMATTHYSELKIFALSTDGVSNACCEFSVETLQPTYRLLIGIPGKSNAFAISSK 501
Query: 626 LGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRT 685
LGL +++ AR+ G +VI +E + + EA + K +
Sbjct: 502 LGLSNYIIEKAREFIGTKDESFEDVISNLEASRIAMEKDKAEAEQY-------KKEVEEL 554
Query: 686 RRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSAS 745
+RK+ E K KI DA + + + A + +AR+++ Q+ + A
Sbjct: 555 KRKLAE--------KNSKIDDA----KDRILREANE------KARTIL----QEAKDYAD 592
Query: 746 QSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVH 805
+++ + E SS+V K++ + + VGD VH
Sbjct: 593 ETIRKYNKWGAGGANNKEMENERAALREKLGDTDSSLVSKAKKNRKQHKPSDFKVGDSVH 652
Query: 806 VSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V S KG+V + +K ++ VQ+G ++ ++ +D+
Sbjct: 653 VISLNLKGSVSTLPNAKGDLYVQMGILRSLVNISDL 688
>gi|78778605|ref|YP_396717.1| MutS2 family protein [Prochlorococcus marinus str. MIT 9312]
gi|78712104|gb|ABB49281.1| MutS2 family protein [Prochlorococcus marinus str. MIT 9312]
Length = 803
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 232/808 (28%), Positives = 385/808 (47%), Gaps = 150/808 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ES+ +LEWD + +SSFA T +G+ A L+ + I Y+ + RLL+ET E++ +
Sbjct: 19 ESISLLEWDSIKTHLSSFASTEMGKRAILS--FKIPSEYEVAKRLLNETVEITELENNLE 76
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR-AAIKEDADL 169
S+ +GV D+S R E + ++ SE L++++ +A + +
Sbjct: 77 KSISFSGVCDIS---------------RNIEICSKGGVILSSELLEIAITISAARNLKKI 121
Query: 170 YIRF--MPLTQMIMQLFVNRSLIKSIMQV-VDEDGSIKDSASPALKQSRGQV--QMLERK 224
+ F P + ++ I++I++ ++ +G I D AS L R ++ + LERK
Sbjct: 122 LLDFEKRPFISSFTKNLIDHHNIETILKNGIESNGRISDDASSKLSILRKELLSKKLERK 181
Query: 225 LYQLMDMLIRNENNESLFLEVSSI---HGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIE 279
+ L+D I+ +L+ + I +GR + + + FKG++ SSSSG E
Sbjct: 182 I--LVDKFIQKN---LAYLQDTIIGDRYGRPVLAVKVNYIDKFKGIIHDSSSSGNTVYFE 236
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
P S V +++ A + E +L ++ + + + + M + +++L+ R+ YS
Sbjct: 237 PDSVVTKGNKIASLEARIAAEEFKLLQKWSQVISDNSENLIAMASILLRLENALTRSRYS 296
Query: 340 LSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAW 399
GG +P IF P+ S + S HPLL+ ++K+K
Sbjct: 297 KWIGGKTP-IF---------EENPIISLIGFS------------HPLLIWENKKKG---- 330
Query: 400 KDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLV 459
SP PV +D I R +V+
Sbjct: 331 ------------------------------SPP-----------PVAVDFQINRNIKVVA 349
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
ITGPNTGGKT LK +GL+++MA++GL I S+ +P+ +++ DIGD QSL ++LSTF
Sbjct: 350 ITGPNTGGKTAALKGLGLSLLMARAGLLIPSTNNPIIPFCPNIYVDIGDNQSLEENLSTF 409
Query: 520 SGHLKQIGNIISQSTSQ---SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 576
SGH+ +I I+ ++ S+VLLDEIG+GT+PLEG+AL M+LL+ FA S +T+ATT
Sbjct: 410 SGHISRIKEILESLDNRRGLSVVLLDEIGSGTDPLEGSALAMALLKEFANK-SDITLATT 468
Query: 577 HHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL-PGIVVQN 635
H+G++K LKY++ FEN + FDE LKP Y + WG+PGRS+A++I++R+GL I+ +
Sbjct: 469 HYGDIKALKYNDSRFENVSVAFDEDSLKPKYILNWGIPGRSNALSISKRIGLNESILNEA 528
Query: 636 ARQLYGAASAEINEVI--IEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHC 693
A L IN +I +E ER K Q A + + LH L
Sbjct: 529 ANYLKPKEVDNINSIIKGLEEERIKQQ--NSAEAAAELIARTEILHDEL----------- 575
Query: 694 ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKV 753
+R + QKI +A I +K ++++ + + L+ K LR +
Sbjct: 576 --KRNYEYQKI-NAEKIQEIERYKLSKKIISAKKEVIDLIRK----LRDQNVNGEDTRII 628
Query: 754 GKN-QHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKK 812
GK + + T + Q VD K I +P+ VGD V + S
Sbjct: 629 GKRLKEIETEHLTQKKVD-------------KSISWNPK--------VGDFVKIKSLNST 667
Query: 813 GTVIKVEPSKEEIVVQVGNMKWIMKFTD 840
G ++ ++ V+ G+ + I+ D
Sbjct: 668 GQIVDLDKKGGFYEVKCGSFRSILSVND 695
>gi|404328575|ref|ZP_10969023.1| recombination and DNA strand exchange inhibitor protein
[Sporolactobacillus vineae DSM 21990 = SL153]
Length = 786
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 222/803 (27%), Positives = 375/803 (46%), Gaps = 136/803 (16%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
+L+ LE+ K+ + + +SLG+ + QL +T + L +ET+ G+
Sbjct: 5 ALKALEYSKIKQQLMHYTASSLGKR-RIEQLQPA-ETLEAVRNLQEETD-------EGAT 55
Query: 113 SLDLTGV----DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
L L G ++ ++ A++ + S L E + + ++ ++ S + ED +
Sbjct: 56 VLRLKGSIPFGGITDIRPALKRTKIGSMLLAKELIDIADTIRGIRLMK-SFILDLAEDQE 114
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L + LT ++ + V L + I +D+ G + DSAS L+ RGQ++ + ++ Q
Sbjct: 115 LDLPI--LTGLVEHMTVPGGLEREIRSAIDDQGGVMDSASTTLRHIRGQIRTFDSRVKQK 172
Query: 229 MDMLIRNENNESLFLEVSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
++ ++ + ++ + R I + + +F G++ S+SG IEP S V L
Sbjct: 173 LENIVHSSGKMLSEAIITIRNDRQVIPVKQEYRGAFGGIVHDQSASGATLFIEPQSIVDL 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N++L +ARA E +L L+EK D + + G+ QLD + A+A+Y +
Sbjct: 233 NNQLSEARAKERHEVERILRVLSEKTAEYADGLLDSVAGLAQLDFIFAKASYGHQMKASR 292
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + ++R I L +A HPL+
Sbjct: 293 PRL---------------------NDR-GVIRLKRARHPLI------------------- 311
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
SP + VPID+ +T L+ITGPNTG
Sbjct: 312 -----------------------SPDRV----------VPIDVLFDEQTHALIITGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT GL +MA+SGL I + E ++V F VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 339 GKTVSLKTTGLLTLMAQSGLQIPAEEGSEVSVFKKVFADIGDEQSIEQSLSTFSSHMTNI 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ Q QSLVL DE+GAGT+P EG AL +++L+ G+ + + TTH+ ELK Y
Sbjct: 399 VGILGQVDDQSLVLFDELGAGTDPQEGAALSIAILDTVYGRGATI-VCTTHYSELKAYAY 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
NA +EFD L PTY++L G+PGRS+A I+++LGLP ++ AR + +
Sbjct: 458 ERPGVMNASVEFDVETLSPTYRLLLGIPGRSNAFEISKKLGLPEEIIDEARLQISHETNQ 517
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV-QKIS 705
I+++I +E+ + AR L+H A R ++ +K++
Sbjct: 518 IDKMIASLEQNRKAAETEEENARK-------------------LKHDAQAREAELTKKLN 558
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTK----VGKNQHVLT 761
D + ++ +Q+ A + K+A+Q +LH K V ++Q +
Sbjct: 559 D--------LERNKEQILIQAKEKAERAVKKARQEADEIIAALHHYKNSGNVKEHQLIDA 610
Query: 762 SNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP---NVGDLVHVSSFGKKGTVIKV 818
+D +E + S +K Q P+ ++P GD V ++SFG+ G ++
Sbjct: 611 KTRLSHALDALE---STDSRKIKHRIQVPK----KMPAGFKSGDHVRMTSFGQDGYIVD- 662
Query: 819 EPSKEEIVVQVGNMKWIMKFTDI 841
+ + E +VQ G +K ++ +D+
Sbjct: 663 KINDHEYLVQAGVLKMNVQDSDL 685
>gi|392971758|ref|ZP_10337151.1| DNA mismatch repair protein MutS [Staphylococcus equorum subsp.
equorum Mu2]
gi|392510297|emb|CCI60439.1| DNA mismatch repair protein MutS [Staphylococcus equorum subsp.
equorum Mu2]
Length = 782
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 232/800 (29%), Positives = 383/800 (47%), Gaps = 132/800 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGRE--ATLTQLWSINQT-YQDSLRLLDETNAAIEM-Q 107
+SL VLE+DK+ V + + LG+E +T N +Q ++ET+ ++
Sbjct: 4 KSLNVLEFDKIKALVENETISDLGKEKVVAMTPATDFNTVEFQ-----MNETDEIAQIYN 58
Query: 108 KHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
KH SL +G L+ + S I L +E + L+Q + + + E+
Sbjct: 59 KHRMPSL--SG--LAKISSFIHRATIGGVLNVSELNVIKRLIQIQNQYKTFYNSLLNEEE 114
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
+ I + L + QL V +L ++I Q D + D AS L+ R ++ +++ Q
Sbjct: 115 E--INYPILNDRMEQLPVLSNLYQNIHQKCDA-YDLFDDASYELQGIRSKISKTTQRIKQ 171
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSA 283
+D +++++ N+ + V+ + R I A+ + F G++ S+SG IEP S
Sbjct: 172 NLDKIVKHQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSI 231
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDE--IEKMLNGIIQLDVVNARATYSLS 341
V +++++ R E +L LT ++ + D I + + G Q+D + A+A Y+ S
Sbjct: 232 VEMSNQISSFRNDEAVERERILTELTVQVAEEADACLISESIMG--QIDFLTAKARYARS 289
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
GT P +++R T+YLPKA+HPL
Sbjct: 290 IKGTKPEF--------------------TTDR--TVYLPKAFHPL--------------- 312
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
L + + + +E A + ++IT
Sbjct: 313 ---------------------------LDRTSVVANTIEFAQDI----------ETVIIT 335
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ LKT+GL + MA+SG+ I + + +K+ F++V+ DIGDEQS+ QSLSTFS
Sbjct: 336 GPNTGGKTVTLKTLGLIIAMAQSGMLIPTLDGSKLSIFENVYCDIGDEQSIEQSLSTFSS 395
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+K I I+ +T SL+L DE+GAGT+P EG AL MS+L+ E GSL+ +ATTH+ EL
Sbjct: 396 HMKNIVEILQDATKNSLILFDELGAGTDPSEGAALAMSILDHVHEIGSLV-MATTHYPEL 454
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL V+Q A+ + G
Sbjct: 455 KAYSYNREGVMNASVEFDVNTLSPTYKLLMGVPGRSNAFDISKKLGLNMQVIQKAKSMIG 514
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
EINE+I +E + E E + ++ L + ++ Q + K
Sbjct: 515 QDEQEINEMIASLEHNSKRVDEQRIELDQLVREAQEARDALAK------QYAQYQNYEK- 567
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLT 761
Q +S+A + A Q SA++ + K + LR + +H L
Sbjct: 568 QLLSEAK--------EKANQRVKSATREADDILKELRDLRDKKGADV-------KEHELI 612
Query: 762 SNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPS 821
+Q D+ E K +KQ+ + ++ + GD V V ++G+KG V+++
Sbjct: 613 DKKKQLE-DQYE---------AKSLKQNVQKQKWDEIKAGDEVKVLTYGQKGEVLELIGD 662
Query: 822 KEEIVVQVGNMKWIMKFTDI 841
K E VVQ+G +K + D+
Sbjct: 663 K-EAVVQMGIIKMKLPLEDL 681
>gi|377556922|ref|ZP_09786596.1| DNA mismatch repair protein MutS2 [Lactobacillus gastricus PS3]
gi|376166998|gb|EHS85865.1| DNA mismatch repair protein MutS2 [Lactobacillus gastricus PS3]
Length = 789
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 221/711 (31%), Positives = 349/711 (49%), Gaps = 111/711 (15%)
Query: 137 LRPNEALAVVALLQFSETLQLSLRAA--IKEDADLYIRFMPLTQMIMQLFVNRSLIKSIM 194
L+ + AL L Q + L+ S+R ++ A+ + L Q++ ++ + K ++
Sbjct: 78 LKVDAALNGTELAQIMQVLRTSMRVQTFFEQLAEQKLTLRTLDQLVARIVTIPDVTKRLV 137
Query: 195 QVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSI-HGRLC 253
+ ++ DG +KD AS L R + E ++ Q ++ R + + L + +I + R
Sbjct: 138 RSLELDGRLKDEASTKLHGVRQLISQTETEIRQALEHYTRGKQAKKLSDPIITIRNDRYV 197
Query: 254 IRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEK 311
I A + F G++ S+SG IEP S V LN+ L+QA+ + VL+ L++
Sbjct: 198 IPVLAQYRNQFGGVVHDQSASGQTLYIEPGSVVELNNRLRQAQIEEVQEMRRVLIELSDL 257
Query: 312 MQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSS 371
++ DEI + + LD++NA+A L MK SL P+ +
Sbjct: 258 IRPYQDEIAQNEAILGHLDLINAKAK-------------LAAQMKASL---PIVND---- 297
Query: 372 EREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSP 431
+ + L +A HPL+ Q D AN
Sbjct: 298 --QLVVNLRQARHPLIPQ-----------DQVVAN------------------------- 319
Query: 432 SEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS 491
DI + + + LVITGPNTGGKTI LKT+G+ +MA+SG+ I ++
Sbjct: 320 ----------------DIQLGKDYQALVITGPNTGGKTITLKTLGIIQLMAQSGMFIPAN 363
Query: 492 EYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPL 551
E ++V FD+VFADIGDEQSL Q+LSTFSGH++ + I+ Q T SL+LLDE+GAGT+P
Sbjct: 364 ENSQVTVFDNVFADIGDEQSLEQNLSTFSGHMENVKTILEQMTDHSLILLDELGAGTDPK 423
Query: 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILW 611
EG AL M++L+A G+ + + TTH+ ELK Y NA MEFD+ L+PTY++L
Sbjct: 424 EGAALAMAILDAIGTCGARVMV-TTHYPELKVYAYDRQATINASMEFDQATLQPTYRLLI 482
Query: 612 GVPGRSSAINIAERLGL-PGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
G+PG+S+ I IA RLGL PGI +Q A+ L A S ++N++I ++ + Q E AR
Sbjct: 483 GIPGQSNGIAIANRLGLDPGI-IQTAQSLVQADSQDLNQMIGDLVEQRKQARE--ENARL 539
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
+ N K T++ L QR R + ARS K+ ++ + QA
Sbjct: 540 VELREANEAKEAELTQK--LTRFDEQRDRLYDE-------ARS---KANHEVAQAKKQAD 587
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
++H LR Q K +H L + Q ++P A +SV++
Sbjct: 588 KIIH----HLRQLQVQQGANVK----EHELINAKGQLNALHQDNPRLAHNSVLR------ 633
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
R K + GD V V S+G++GT++ + + + VQ+G +K + D+
Sbjct: 634 RAKAKQALKPGDTVQVKSYGQQGTLV-AKRGRHQWEVQLGILKMAIDEADL 683
>gi|205374420|ref|ZP_03227217.1| recombination and DNA strand exchange inhibitor protein [Bacillus
coahuilensis m4-4]
Length = 766
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 224/779 (28%), Positives = 367/779 (47%), Gaps = 122/779 (15%)
Query: 68 SFARTSLGREATLTQLWSINQTYQDSLRLLDETN-AAIEMQKHGSCSLDLTGVDLSLVKS 126
SFA +SLGRE + + + + +D + L +ET+ AA ++ G L + ++
Sbjct: 2 SFASSSLGRERAESLVPAT--SLEDVITLQEETDEAATVLRLKGHAPLG----GIFNIRP 55
Query: 127 AIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVN 186
++ L +E + V + + S ++ +E DL I +I ++ +
Sbjct: 56 QLKRAEIGGMLNASELVEVASTIYASRMIRAFEEQLSEEGVDLPI----FHGLISEMPIL 111
Query: 187 RSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE-- 244
L I Q +D++G I D ASPAL+ R Q ++ E ++ + ++ ++R+ N + + +
Sbjct: 112 TGLEHEIKQSIDDNGEILDGASPALRSIRSQRRLTEGRVREKLESMVRSRNAQKMLSDAI 171
Query: 245 VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVTKAEE 302
V+ + R + + G ++ SSSG IEP S V LN+ L++ R E
Sbjct: 172 VTIRNDRYVLPVKQEYRGHYGGIVHDQSSSGQTLFIEPESVVQLNNSLRELRVKEQTEIE 231
Query: 303 DVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHE 362
+LL L+ ++ +++ ++N + +D + +A Y S GT P++ D R
Sbjct: 232 KILLELSGRVSEVTEDLSVIINHLAHIDFMFTKAKYGRSIKGTKPSM---NDKGR----- 283
Query: 363 PVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARK 422
I L KA HPLL +E A
Sbjct: 284 --------------IKLFKARHPLL-------------GIEEA----------------- 299
Query: 423 GEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMA 482
V DIF+ +VITGPNTGGKT+ LKT+G+ ++A
Sbjct: 300 ----------------------VANDIFLGEDFTTIVITGPNTGGKTVTLKTIGICTLLA 337
Query: 483 KSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLD 542
++GL I + + +++ F SV+ADIGDEQS+ QSLSTFS H+ I +I+ + QSLVL D
Sbjct: 338 QAGLPIPALDGSELAVFQSVYADIGDEQSIEQSLSTFSSHMVNIVDILDKVDFQSLVLFD 397
Query: 543 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 602
E+GAGT+P EG AL +S+L+ + G+ + +ATTH+ ELK Y+ + NA +EFD
Sbjct: 398 ELGAGTDPQEGAALAISILDYVYKRGARV-VATTHYPELKAYGYNREGVVNASVEFDVET 456
Query: 603 LKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFL 662
L+PTY++L GVPGRS+A I++RLGL V+ AR G S ++ +I +E K
Sbjct: 457 LRPTYRLLLGVPGRSNAFEISKRLGLSDDVIDYARVHIGTDSKQVENMIASLEESKRMAE 516
Query: 663 EHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQL 722
+ EA L + LH++L +++ +E+ ++ V K D A + A+++
Sbjct: 517 KERMEANELLKSADKLHRDL---QKQTVEYY-EKKDELVDKAKDKAIKIVEEAKREAEEI 572
Query: 723 CPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSV 782
R L + R Q+ L K T N ++T
Sbjct: 573 I------RELRNLRIQKNAEVKEHELIEAKKRLEDATPTKNMKKT--------------- 611
Query: 783 VKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
Q+ R EL GD V V SFG+KG +++ + + E VQ+G +K ++ DI
Sbjct: 612 -----QASRTDSKEL-RPGDDVKVLSFGQKGVLLE-KTGEAEWAVQMGILKMKVETKDI 663
>gi|418961600|ref|ZP_13513485.1| DNA mismatch repair protein [Lactobacillus salivarius SMXD51]
gi|380343695|gb|EIA32043.1| DNA mismatch repair protein [Lactobacillus salivarius SMXD51]
Length = 786
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 204/673 (30%), Positives = 319/673 (47%), Gaps = 111/673 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ ++ +F TS+G+ L + Y DE ++ K G+
Sbjct: 6 LKTLEYDKVKQNLYAFTTTSMGKR--LIDKLEPSSDY-------DEIANSLSQTKDGADI 56
Query: 114 LDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
L + G +L +KS ++ + L E A+ +L+ + + K+ AD
Sbjct: 57 LRIKGGIPVPNLISIKSFLKRLDIGGTLNSKELAAIGRVLRATN----EVNRFFKDLADN 112
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I+ L + +L + K ++ ++ DG + D AS LK R Q+ + E + + +
Sbjct: 113 KIKLEVLFDDVAKLESLPEISKKLLVSIENDGHVTDDASTLLKSIRQQISVTEETIRERL 172
Query: 230 DMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
+ R N++ L V +I R + + S F G++ SSSG +EP V L
Sbjct: 173 NSYTRGTNSKYLSNAVVTIRNERYVLPVKQEYRSKFGGIVHDQSSSGQTLFVEPAVIVEL 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L+Q + + + +L L+E++ E+ + LD NA+A Y+ S T
Sbjct: 233 NNRLRQQQVAEREEINRILEELSEELAPYTHELNNNAKILGMLDFTNAKAKYAHSIKAT- 291
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
EP+ SK E +YL + +HPL
Sbjct: 292 ---------------EPILSK------ENDVYLRQVWHPL-------------------- 310
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
L++ V DI I + + +VITGPNTG
Sbjct: 311 --------------------------------LDMKKAVKNDIMIGKDYQAIVITGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+GL +M +SGL+I + E +++ F ++FADIGDEQS+ QSLSTFS H+ I
Sbjct: 339 GKTITLKTLGLVQLMGQSGLYIPAFEESRIGIFGNIFADIGDEQSIEQSLSTFSSHMTNI 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ +SLVL DE+GAGT+P EG AL +S+L+A GS + +ATTH+ ELK +
Sbjct: 399 VEILKDIDEKSLVLFDELGAGTDPQEGAALAISILDAVGAKGSYV-VATTHYPELKAYGF 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
NA MEFD L+PTY++L G+PGRS+A +I++RLGL ++V ARQL S +
Sbjct: 458 ERPNTINASMEFDVNTLQPTYRLLIGIPGRSNAFDISQRLGLDKMIVMAARQLTSQDSQD 517
Query: 647 INEVIIEM----------ERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHC--- 693
+NE+I ++ E ++L E H L N H+ R + +LE
Sbjct: 518 LNEMISDLVAKRHDAEEKEIMYRKYLREAEELHH--DLEANFHQ-FERQKENMLEQAKEK 574
Query: 694 ASQRFRKVQKISD 706
A+Q + +K SD
Sbjct: 575 ANQIVEETKKKSD 587
>gi|417788685|ref|ZP_12436368.1| recombination inhibitory protein MutS2 [Lactobacillus salivarius
NIAS840]
gi|334308862|gb|EGL99848.1| recombination inhibitory protein MutS2 [Lactobacillus salivarius
NIAS840]
Length = 786
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 221/788 (28%), Positives = 365/788 (46%), Gaps = 134/788 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ ++ +F TS+G+ L + Y DE ++ K G+
Sbjct: 6 LKTLEYDKVKQNLYAFTTTSMGKR--LIDKLEPSSDY-------DEIANSLSQTKDGADI 56
Query: 114 LDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
L + G +L +KS ++ + L E A+ +L+ + + K+ AD
Sbjct: 57 LRIKGGIPVPNLISIKSFLKRLDIGGTLNSKELAAIGRVLRATN----EVNRFFKDLADN 112
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I+ L + +L + K ++ ++ DG + D AS LK R Q+ + E + + +
Sbjct: 113 KIKLEVLFDDVAKLESLPEISKKLLVSIENDGHVTDDASTLLKSIRQQISVTEETIRERL 172
Query: 230 DMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
+ R N++ L V +I R + + S F G++ SSSG +EP V L
Sbjct: 173 NSYTRGTNSKYLSNAVVTIRNERYVLPVKQEYRSKFGGIVHDQSSSGQTLFVEPAVIVEL 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L+Q + + + +L L+E++ E+ + LD NA+A Y+ S T
Sbjct: 233 NNRLRQQQVAEREEINRILEELSEELAPYTHELNNNAKILGMLDFTNAKAKYAHSIKAT- 291
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
EP+ SK E +YL + +HPL
Sbjct: 292 ---------------EPILSK------ENDVYLRQVWHPL-------------------- 310
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
L++ V DI I + + +VITGPNTG
Sbjct: 311 --------------------------------LDMKKAVKNDIMIGKDYQAIVITGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+GL +M +SGL+I + E +++ F ++FADIGDEQS+ QSLSTFS H+ I
Sbjct: 339 GKTITLKTLGLVQLMGQSGLYIPAFEESRIGIFGNIFADIGDEQSIEQSLSTFSSHMTNI 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ +SLVL DE+GAGT+P EG AL +S+L+A GS + +ATTH+ ELK +
Sbjct: 399 VEILKGIDEKSLVLFDELGAGTDPQEGAALAISILDAVGAKGSYV-VATTHYPELKAYGF 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
NA MEFD L+PTY++L G+PGRS+A +I++RLGL ++V ARQL S +
Sbjct: 458 ERPNTINASMEFDANTLQPTYRLLIGIPGRSNAFDISQRLGLDKMIVMAARQLTSQDSQD 517
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+NE+I ++ + E R +L + LH + LE Q R+ + + +
Sbjct: 518 LNEMISDLVAKRHDAEEKEIMYRKYLREAEELHHD--------LETNFHQFERQKENMLE 569
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A + A Q+ + + + ++++ SA+ ++ + Q + + Q+
Sbjct: 570 QA-------KERANQIVEETKKKSNELISELRKMKMSAASNIEEGSLIDAQGRVNALHQE 622
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
T + K + V++ KQ + PN D V V+S+G++G +++
Sbjct: 623 TNLKK--------NKVLRKAKQQQELH----PN--DDVMVNSYGQRGVLLR--------- 659
Query: 827 VQVGNMKW 834
+ GN W
Sbjct: 660 -KAGNHAW 666
>gi|403046921|ref|ZP_10902390.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus sp. OJ82]
gi|402763617|gb|EJX17710.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus sp. OJ82]
Length = 782
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 232/800 (29%), Positives = 383/800 (47%), Gaps = 132/800 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGRE--ATLTQLWSINQT-YQDSLRLLDETNAAIEM-Q 107
+SL VLE+DK+ V + + LG+E +T N +Q ++ET+ ++
Sbjct: 4 KSLNVLEFDKIKALVENETISDLGKEKVVAMTPATDFNTVEFQ-----MNETDEIAQIYN 58
Query: 108 KHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
KH SL +G L+ + S I L +E + L+Q + + + E+
Sbjct: 59 KHRMPSL--SG--LAKISSFIHRATIGGVLNVSELNVIKRLIQIQNQYKTFYNSLLNEEE 114
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
+ I + L + QL V +L ++I Q D + D AS L+ R ++ +++ Q
Sbjct: 115 E--INYPILNDRMEQLPVLSNLYQNIHQKCDA-YDLFDDASYELQGIRSKISKTTQRIKQ 171
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSA 283
+D +++++ N+ + V+ + R I A+ + F G++ S+SG IEP S
Sbjct: 172 NLDKIVKHQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSI 231
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDE--IEKMLNGIIQLDVVNARATYSLS 341
V +++++ R E +L LT ++ + D I + + G Q+D + A+A Y+ S
Sbjct: 232 VEMSNQISSFRNDEAVERERILTELTVQVAEEADACLISESIMG--QIDFLTAKARYARS 289
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
GT P +++R T+YLPKA+HPL
Sbjct: 290 IKGTKPEF--------------------TTDR--TVYLPKAFHPL--------------- 312
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
L + + + +E A + ++IT
Sbjct: 313 ---------------------------LDRTSVVANTIEFAQDI----------ETVIIT 335
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ LKT+GL + MA+SG+ I + + +K+ F++V+ DIGDEQS+ QSLSTFS
Sbjct: 336 GPNTGGKTVTLKTLGLIIAMAQSGMLIPTLDGSKLSIFENVYCDIGDEQSIEQSLSTFSS 395
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+K I I+ +T SL+L DE+GAGT+P EG AL MS+L+ E GSL+ +ATTH+ EL
Sbjct: 396 HMKNIVEILQDATKNSLILFDELGAGTDPSEGAALAMSILDHVHEIGSLV-MATTHYPEL 454
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL V+Q A+ + G
Sbjct: 455 KAYSYNREGVMNASVEFDVNTLSPTYKLLMGVPGRSNAFDISKKLGLNMQVIQKAKSMIG 514
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
EINE+I +E + E E + ++ L + ++ Q + K
Sbjct: 515 QDEQEINEMIASLEHNSKRVDEQRIELDQLVREAQEARDALAK------QYAQYQNYEK- 567
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLT 761
Q +S+A + A Q SA++ + K + LR + +H L
Sbjct: 568 QLLSEAK--------EKANQRVKSATREADDILKELRDLRDKKGADV-------KEHELI 612
Query: 762 SNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPS 821
+Q D+ E K +KQ+ + ++ + GD V V ++G+KG V+++
Sbjct: 613 DKKKQLE-DQYE---------AKSLKQNVQKQKWDEIKAGDEVKVLTYGQKGEVLELIGD 662
Query: 822 KEEIVVQVGNMKWIMKFTDI 841
K E VVQ+G +K + D+
Sbjct: 663 K-EAVVQMGIIKMKLPLEDL 681
>gi|168030914|ref|XP_001767967.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680809|gb|EDQ67242.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 964
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 261/875 (29%), Positives = 404/875 (46%), Gaps = 129/875 (14%)
Query: 20 SFAITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREAT 79
S+ ++N++ F S +D DD + V E+L++LEW ++C VS FA T +
Sbjct: 50 SYEVSNES-----FLSDDVKADIDDGNN-VETETLKLLEWPRVCIQVSEFASTPMAVAVA 103
Query: 80 LTQLWSINQTYQDSLRLLDETNAA------------------IEMQKHGS-CSLDLTGVD 120
I +T +S L +T AA IE + G+ C L+ +
Sbjct: 104 RKGDLPIGRTVVESEELQAQTVAAQLLSSPLEFSGIEDLRKFIEDAQSGNVCQLE----E 159
Query: 121 LSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMI 180
L LV+ + VRR N+ + Q +L +S A+I PL ++
Sbjct: 160 LCLVRKTLAAVRRLH----NQVVG-----QSHSSLHVSGAASIG----------PLQAVM 200
Query: 181 MQLFVNRSLIKSIMQVVD-EDGSIKDSASPALKQSRGQVQ----MLERKLYQLMDMLIRN 235
+ + L +I +D +I D AS L R Q LE + + M+
Sbjct: 201 LGCNLCSELESAIEYCLDCSRSTILDRASSKLASVRLMRQENSMALESLIKETAAMVFSA 260
Query: 236 ENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLS------SSSGIGSVIEPLSAVPLNDE 289
+S V+ GR+C+ A Q KGLL S++G +EP SA+ N+E
Sbjct: 261 GGMDSQL--VTKRRGRMCVAVRASQ---KGLLKGGVTLDVSNTGATYFMEPESAIHFNNE 315
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDL-DEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
Q A K EE +L M +D D++ +L + LD+ ARA +S G P
Sbjct: 316 EIQL-AEEEKLEEIAVLRQLTFMLLDTSDDVIDLLERVTTLDLACARAGHSAWLNGARP- 373
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSERE--WTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
+F+ + ++ ++ +E + + HPLLL LES
Sbjct: 374 VFVNSMADSMSSSHSSSALDTTPAKEDLLLVDIKGVRHPLLL----------GSALESPV 423
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPS---EMQVSALELAHPVPIDIFIARKTRVLVITGP 463
R G R+ EK S ++ S ++ PVPIDI I +V+ ITGP
Sbjct: 424 NSPRY-----GIYIRQKEKSRRSSSGLKGAVESSNVDRMLPVPIDINIRTGVKVVTITGP 478
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT LKT+G+ +MAK+GL + ++ ++PWFDS+ ADIGD+QSL ++LSTFSGH+
Sbjct: 479 NTGGKTAALKTLGVVALMAKAGLCLPATGVPRLPWFDSILADIGDDQSLERNLSTFSGHI 538
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
+++ I+ T+QSL+LLDEIG GT+P EG AL ++L A S LT+ATTH EL+T
Sbjct: 539 RRVRQILEAGTAQSLILLDEIGGGTDPSEGAALATAILRNLAASVQ-LTLATTHCAELRT 597
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY--- 640
LK + FENA +EFD L+PTY++LWG+ G+S+A+NIA LG V+ AR+L
Sbjct: 598 LKDHDPEFENASVEFDVKTLRPTYRVLWGIAGQSNALNIAASLGFDSEVLTRARELVTKL 657
Query: 641 --GAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRF 698
+ A E+++ + + + + LE A L + L+ L + + A +
Sbjct: 658 VPASLGARSTELMVPLVKQRNEQLERSAAAASALAIISKLYNKLQSEAENLAQKEA--KL 715
Query: 699 RKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQH 758
R++Q+ A + + H +A + + + + SA Q K +++
Sbjct: 716 RRLQE----EATNKKVAHANAS------------LEEILLKFQESAHQ-----KAKEDEG 754
Query: 759 VLTSNFQQTTVDKVEHPATASSSVVKDIKQSP--------RVKRTELPNVGDLVHVSSFG 810
+ Q + VE AT V I +P + E VGD V + G
Sbjct: 755 FSMRDAQAAIIAVVEEHATKP---VASITSNPASITEPEGKEGEGEQLRVGDEVIIKRLG 811
Query: 811 KKGTVIKVEPSKEE--IVVQVGNMKWIMKFTDIVT 843
K I P E + VQVG MK +K +I++
Sbjct: 812 KLPATIVDIPQAENDYLTVQVGTMKMRVKLNEILS 846
>gi|326391467|ref|ZP_08213002.1| MutS2 family protein [Thermoanaerobacter ethanolicus JW 200]
gi|392940299|ref|ZP_10305943.1| LOW QUALITY PROTEIN: MutS2 family protein [Thermoanaerobacter
siderophilus SR4]
gi|325992493|gb|EGD50950.1| MutS2 family protein [Thermoanaerobacter ethanolicus JW 200]
gi|392292049|gb|EIW00493.1| LOW QUALITY PROTEIN: MutS2 family protein [Thermoanaerobacter
siderophilus SR4]
Length = 791
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 190/627 (30%), Positives = 306/627 (48%), Gaps = 99/627 (15%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGS 111
+++ LE+DK+ + + + LG++ I + ++ R LD N AI + +G
Sbjct: 9 AIKSLEFDKIVEFIVGYCDSDLGKQKASD--IVIKKDIEEIERELDLLNEAISFISSYGG 66
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
S + + I++ + S L E L + L ++ + +++D ++
Sbjct: 67 ISFAFEDI-----RDYIKKAQIDSVLYNQELLKIKKFLNLVSQIKGYFKNL--QESDRFV 119
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
R + ++ + ++L K I ++ + I D ASP LK R Q + K+ ++
Sbjct: 120 RLKEYDKKVLPI---KNLEKRIENIIISEDEIADDASPMLKALRRQKLSINEKIRATLNS 176
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
+I E ++ GR + + S FKG++ SSSG IEP+ V LN+E
Sbjct: 177 IISTRQKELQEPIITVRQGRYVVPVKQEYRSTFKGIVHDQSSSGATLFIEPMQVVDLNNE 236
Query: 290 LQQARASVTKAEEDVLLALTEKM----QVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
L+Q + + +L L++++ Q+ D+IE + + LD + A+A YSL
Sbjct: 237 LRQVELKEKQEIQRILFELSQEVKKYSQILFDDIEIVSD----LDFIFAKAKYSLKLKAV 292
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
P + ++ + I L KA HPL+ Q
Sbjct: 293 RPEL-------NTMGY---------------INLKKARHPLINQ---------------- 314
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
E+ P+ DI+I + LVITGPNT
Sbjct: 315 ----------------------------------EVIVPI--DIYIGDQFNTLVITGPNT 338
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKTVGL +MA +GL+I + E ++V F+ VF DIGDEQS+ QSLSTFS H+
Sbjct: 339 GGKTVTLKTVGLLTLMAMAGLNIPAEERSQVSIFEEVFVDIGDEQSIEQSLSTFSSHMTN 398
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I +I+ + LVLLDE+GAGT+P+EG AL MS+L+ + G+ TIATTH+ ELK
Sbjct: 399 IVSILQKVNKNCLVLLDELGAGTDPIEGAALAMSILDTLHKIGA-KTIATTHYSELKQYA 457
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
ENA +EFD LKPTYK++ G+PG+S+A I++RLGLP +++NAR+ +
Sbjct: 458 LKAPGVENASVEFDVETLKPTYKLIIGLPGKSNAFEISKRLGLPQQIIENARKYISGEAL 517
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFL 672
+ ++I ++E K + LE ++ FL
Sbjct: 518 KFEDIIADVES-KRRELEKANQEIAFL 543
>gi|145347182|ref|XP_001418054.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578282|gb|ABO96347.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 725
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 123/224 (54%), Positives = 162/224 (72%), Gaps = 6/224 (2%)
Query: 437 SALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKV 496
A +L P+P+DIF +++T+V+VITGPNTGGKT +K VGLA +MAKSG+ I +E A +
Sbjct: 487 GAPKLKGPIPVDIFASKRTKVVVITGPNTGGKTAAMKAVGLAALMAKSGIFI-PAERAVI 545
Query: 497 PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556
P+FD V DIGD+QSL SLSTFSG L + I+ QST +SLVL+DE+G GT+P EG A+
Sbjct: 546 PFFDKVLVDIGDDQSLLTSLSTFSGRLTRAQAILEQSTPESLVLMDEVGTGTSPAEGAAI 605
Query: 557 GMSLLEAFA-----ESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILW 611
G +LL+A A + G+ LT ATTHHG+LK LKY ++ FENA +EFDE L+PTYK+LW
Sbjct: 606 GYALLKALAGIIPGQLGACLTFATTHHGQLKALKYEHEEFENAAVEFDEADLRPTYKLLW 665
Query: 612 GVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEME 655
GVPGRSSA+ IA R L VV AR+L G +++ I ++E
Sbjct: 666 GVPGRSSALQIATRYKLDADVVHEARELLGEGLVSLDDTISKLE 709
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 153/317 (48%), Gaps = 17/317 (5%)
Query: 41 DSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDET 100
D+D + ++ +SL WD ++ A T+LG+ A T + T +++ + LDET
Sbjct: 66 DADAVRRDLLEKSLASAGWDDARMFLAKRASTALGKAACET--LEASTTSREARKALDET 123
Query: 101 NAAIEMQ-KHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSL 159
AA+ M+ KHG SL+ G+ + V+ + R+ SPL +E A A L+ ++ L+ S+
Sbjct: 124 EAAMAMESKHG-VSLEFGGMLTAEVRRGFYKTRQGSPLGGDELAATAAFLESAKRLKTSI 182
Query: 160 RAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQ 219
+ E +PL + ++ + L + I V+E G +D+ASP L+++R Q
Sbjct: 183 E-GVTESGRRPRALVPLRAISGEMITHSELAEKIRGAVEETGEFRDNASPELRRARAQKG 241
Query: 220 MLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSVIE 279
E KL + M + + + GR+ + A ++ + + G +IE
Sbjct: 242 AAEGKLKKAM----QGKGTPTTH------QGRMVLAIPAPAPPDVLVVGTMAGGALVLIE 291
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
P V LN EL QA + A + + L+ + + ++E+ L +I+LDV+ A+ YS
Sbjct: 292 PPGIVTLNRELAQAVDAEKSAIDAIKRELSNDIALVVEELFACLEIVIKLDVIAAKCRYS 351
Query: 340 LSFGGTSP--NIFLPQD 354
+ G P ++F D
Sbjct: 352 QALNGVRPEFSVFADDD 368
>gi|194017274|ref|ZP_03055886.1| recombination and DNA strand exchange inhibitor protein MutS2
[Bacillus pumilus ATCC 7061]
gi|194011142|gb|EDW20712.1| recombination and DNA strand exchange inhibitor protein MutS2
[Bacillus pumilus ATCC 7061]
Length = 786
Score = 253 bits (645), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 236/801 (29%), Positives = 375/801 (46%), Gaps = 138/801 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREAT--LTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ V S+ ++LG+E LT L I +T Q L ++E I ++ GS
Sbjct: 7 LASLEFHKVKEKVMSYTASTLGKERAQDLTPLTDI-ETIQHLLEEVEEAQDVIRLK--GS 63
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++ A++ S L P+E + + LL + ++ L + ++ D+
Sbjct: 64 APFG----GLTDIRRAVKRAEIGSTLSPSELMEIAGLLYAVKNMKHFLTSMYEDGVDIP- 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
R + ++ L R K I + ++G + D A+PAL+ R Q++ LE K+ ++
Sbjct: 119 RLHTYAETLILLPEIR---KEIESCIGDNGEVLDHATPALRSLRIQLRSLESKVRDKLES 175
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+IR+++ + + V+ + R I + S G ++ SSSG IEP V +N
Sbjct: 176 MIRSQSASKMLSDTIVTIRNDRFVIPVKQEYRSNYGGIVHDQSSSGATLFIEPQVVVDVN 235
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQQ R + E +L LTE + + E+ + + LD + A+A Y+ + T P
Sbjct: 236 NTLQQTRLKEKQEVEKILQMLTESVSEHIGELLHNVKELQTLDFIFAKAKYAKTEKATKP 295
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+ + IYL +A HP
Sbjct: 296 AV----------------------NDQGEIYLKRARHP---------------------- 311
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
L P + V+ DI + + +VITGPNTGG
Sbjct: 312 ---------------------LLPRDQVVAN---------DIELGKDFSTIVITGPNTGG 341
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT+GL +M ++GLHI E ++V FD VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 342 KTVTLKTLGLLTLMTQAGLHIPVEEGSEVAVFDQVFADIGDEQSIEQSLSTFSSHMVNIV 401
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
+I+ TS SLVL DE+GAGT+P EG AL MS+L+ ++ + + IATTH+ ELK Y+
Sbjct: 402 DILKHLTSNSLVLFDELGAGTDPAEGAALAMSILDEVHQTNARV-IATTHYPELKAYGYN 460
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
+ NA +EFD L PTY++L GVPGRS+A I++RLGLP ++ A+ A E+
Sbjct: 461 REGVTNASVEFDIETLSPTYRLLIGVPGRSNAFEISKRLGLPDHLIDRAKADMHAEHNEV 520
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR-------TRRKILEHCASQRFRK 700
+++I +E K Q E +HE + + LHK L R + K+LE A Q+ +
Sbjct: 521 DQMIASLEDSKKQAEEELHETEVYRKEAEKLHKELQRQILEWNEQKDKLLEE-AEQKAK- 578
Query: 701 VQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVL 760
+KI A+ A ++ Q+L S+ RS R +++
Sbjct: 579 -EKIEQASKEAEDII----QELRSIKSEHRSFKEHELIDARKRLEEAV------------ 621
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
F + + V+ +K GD V V +FG+KGT+++ +
Sbjct: 622 -PEFDRKKK------PEPAKKAVRQLKS------------GDEVKVLTFGQKGTLLE-QT 661
Query: 821 SKEEIVVQVGNMKWIMKFTDI 841
+E VQ+G +K +K D+
Sbjct: 662 GDKEWSVQIGILKMKVKEKDM 682
>gi|157412576|ref|YP_001483442.1| DNA mismatch repair protein MutS family protein [Prochlorococcus
marinus str. MIT 9215]
gi|157387151|gb|ABV49856.1| putative DNA mismatch repair protein MutS family [Prochlorococcus
marinus str. MIT 9215]
Length = 810
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 197/626 (31%), Positives = 323/626 (51%), Gaps = 106/626 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ES+ +LEWD L +SSF+ T +G+ A L + I Y+ S RLL+ET E++ +
Sbjct: 26 ESISLLEWDSLKVHLSSFSSTEMGKRAILG--FGIPSEYELSKRLLNETVEINELENNLD 83
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
S+ + V D+S R ++ LL+ ++T+ AA + ++
Sbjct: 84 KSISFSNVFDIS---------RNIEICSKGGVISSSELLEIAKTI-----AAARNLKKIF 129
Query: 171 IRF--MPLTQMIMQLFVNRSLIKSIMQV-VDEDGSIKDSASPALKQSRGQV--QMLERKL 225
+ F P + ++ +++I + ++ +G I D+AS L R ++ + LERK+
Sbjct: 130 LDFEQRPYISSFTKNLLDHQNVETIFKRGIESNGRISDNASNELSVLRKELLSKKLERKI 189
Query: 226 YQLMDMLIRNENNESLFLEVSSI---HGRLCIRTGADQ-LSFKGLLL-SSSSGIGSVIEP 280
L++ I+ +L+ ++I +GR + + + FKG++ SSSSG EP
Sbjct: 190 --LVEKFIQKN---LAYLQDTTIGDRNGRPVLAVKVNYVIKFKGIIHDSSSSGNTVYFEP 244
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
S V +++ A +T E +L ++ + + + + +M + +++L+ R+ YS
Sbjct: 245 ESVVTKGNKIASLEARITAEEFKLLKKWSQIVSDNSENLIEMASILLRLENALTRSRYSK 304
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
GG +P + P+ S V S HPLL+ +HK+K
Sbjct: 305 WIGGKTP----------TFEKNPIISLVGFS------------HPLLIWEHKKKG----- 337
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
+P PV +D I R +V+ I
Sbjct: 338 -----------------------------APP-----------PVAVDFHINRNIKVVAI 357
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT LK +GL+++MA++GL I S+ +P+ +++ DIGD QSL ++LSTFS
Sbjct: 358 TGPNTGGKTAALKGLGLSLLMARAGLLIPSTNNPIIPFCPNIYVDIGDNQSLEENLSTFS 417
Query: 521 GHLKQIGNIISQSTSQ---SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
GH+ +I I+ ++ S+VLLDEIG+GT+PLEG+AL M+LL+ FA S +T+ATTH
Sbjct: 418 GHISRIKEILDSLNNKRGLSVVLLDEIGSGTDPLEGSALAMALLKEFANK-SDITLATTH 476
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL-PGIVVQNA 636
+G++K LKY++ FEN + FDE LKP Y + WG+PGRS+A++I++R+GL I+ + A
Sbjct: 477 YGDIKALKYTDSRFENVSVVFDEDSLKPKYILNWGIPGRSNALSISKRIGLDENILNEAA 536
Query: 637 RQLYGAASAEINEVI--IEMERFKTQ 660
L INE+I +E ER K Q
Sbjct: 537 NYLRPKEVDNINEIIKGLEEERIKQQ 562
>gi|113953514|ref|YP_731592.1| MutS2 family protein [Synechococcus sp. CC9311]
gi|113880865|gb|ABI45823.1| MutS2 family protein [Synechococcus sp. CC9311]
Length = 805
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 222/743 (29%), Positives = 340/743 (45%), Gaps = 116/743 (15%)
Query: 59 WDKLCHSVSSFARTSLGREATLT-QL---WSINQTYQDSLRLLDETNAAIEMQKHGSCSL 114
W +LC S+FA T GR+ L QL TYQ L + ++ L
Sbjct: 26 WPRLCQHFSTFASTPQGRQQCLKGQLPADLETTLTYQARSMELASLDGLLD------GGL 79
Query: 115 DLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
GV DL +V + + E L+V L + L+ + +D DL R
Sbjct: 80 SFQGVYDLEMV---LLRCYKGGTASGEELLSVAHTLAAARRLRRQI-----DDPDLRPRC 131
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
L + + L L + + ++E G + + AS +L+ R Q Q+ ++ + ++
Sbjct: 132 SALLENVATLP---ELEQRLKFALEEGGRVANRASESLEDLRLQWQVARQERRDRLQAVV 188
Query: 234 RNENNESLFLEVSSIHGR--LCIRTGADQLSFKGLLLSSSSGIGSVIEPLSAVPLNDELQ 291
R + ++ HGR L ++ GA + SSSSG +EP + + L + L
Sbjct: 189 RRWSTLLQDTVIAERHGRPVLAVKAGAASQCPGMVHDSSSSGNTVFVEPKTVIGLGNRLA 248
Query: 292 QARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFL 351
+ E VL L+ + D I++++ +++LD+ AR Y G P +
Sbjct: 249 ALDGRIRDEERRVLAELSAAVAEQNDVIDRLMAVLLKLDLALARGRYGQWLGAVPPRL-- 306
Query: 352 PQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL-QQHKQKTQQAWKDLESANTELR 410
+E + ++ + HPLL+ QQ K+ + +LR
Sbjct: 307 ------------------EAEADSPFHILELRHPLLVWQQRKEGGAPVVPVSVEVSEQLR 348
Query: 411 RRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTI 470
V+ ITGPNTGGKT+
Sbjct: 349 ----------------------------------------------VVAITGPNTGGKTV 362
Query: 471 CLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI- 529
LK++GLA +MA++G+ I + +PW V ADIGDEQSL QSLSTFSGH+K+IG+I
Sbjct: 363 TLKSIGLAALMARAGMWIPCNGSPSLPWCAQVLADIGDEQSLQQSLSTFSGHVKRIGSIL 422
Query: 530 --ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
I+ + +LVLLDE+GAGT+P EGTAL ++LL A + LTIATTH GELK LKYS
Sbjct: 423 QSIASGPAPALVLLDEVGAGTDPSEGTALAIALLRNLANC-ARLTIATTHFGELKALKYS 481
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG-AASAE 646
+ FENA + FD L PTY++LWG+PGRS+A+ IA RLG V++ ARQL + +
Sbjct: 482 DSRFENASVSFDSDSLSPTYQLLWGIPGRSNALAIATRLGFDSGVIEQARQLLKPSGDGD 541
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQ----RFRKVQ 702
+N VI +E + + +A L + LH+ LL+ + ++ A Q R R
Sbjct: 542 VNAVIRGLEEQRQRQQAAAEDAAALLARTELLHEELLQRWEQQRKNSAQQQELGRQRLES 601
Query: 703 KISDAAAIARSLVHK-------------SAQQLCPSASQARSLVHKRAQ-QLRPSASQSL 748
I D R L+ + + Q+L S+ RS+ +R + RPS + +
Sbjct: 602 SIRDGQKEVRHLIRRLRDQKADGETARSAGQRLRKLESKHRSVPERRLHPEWRPSVGERI 661
Query: 749 HCTKVGKNQHVL--TSNFQQTTV 769
+ K VL + + QQ +V
Sbjct: 662 RLLALDKAAEVLEVSDDGQQLSV 684
>gi|256751292|ref|ZP_05492172.1| MutS2 family protein [Thermoanaerobacter ethanolicus CCSD1]
gi|256749847|gb|EEU62871.1| MutS2 family protein [Thermoanaerobacter ethanolicus CCSD1]
Length = 791
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 189/627 (30%), Positives = 306/627 (48%), Gaps = 99/627 (15%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGS 111
+++ LE+DK+ + + + LG++ I + ++ R LD N AI + +G
Sbjct: 9 AIKSLEFDKIVEFIVGYCDSDLGKQKASD--IVIKKDIEEIERELDLLNEAISFISSYGG 66
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
S + + I++ + S L E L + L ++ + +++D ++
Sbjct: 67 ISFAFEDI-----RDYIKKAQIDSVLYNQELLKIKKFLNLVSKIKGYFKNL--QESDRFV 119
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
R + ++ + ++L K I ++ + I D ASP LK R Q + K+ ++
Sbjct: 120 RLKEYDKKVLPI---KNLEKRIENIIISEDEIADDASPMLKSLRRQKLSINEKIRATLNS 176
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
+I E ++ GR + + S FKG++ SSSG IEP+ V LN+E
Sbjct: 177 IISTRQKELQEPIITVRQGRYVVPVKQEYRSTFKGIVHDQSSSGATLFIEPMQVVDLNNE 236
Query: 290 LQQARASVTKAEEDVLLALTEKM----QVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
L+Q + + +L L++++ Q+ D+IE + + LD + A+A YSL
Sbjct: 237 LRQVELKEKQEIQRILFELSQEVKKYSQILFDDIEIVSD----LDFIFAKAKYSLKLKAV 292
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
P + ++ + I L KA HPL+ Q
Sbjct: 293 RPEL-------NTMGY---------------INLKKARHPLINQ---------------- 314
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
E+ P+ DI+I + LVITGPNT
Sbjct: 315 ----------------------------------EVIVPI--DIYIGDQFNTLVITGPNT 338
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKTVGL +MA +GL+I + E ++V F+ VF DIGDEQS+ QSLSTFS H+
Sbjct: 339 GGKTVTLKTVGLLTLMAMAGLNIPAEERSQVSIFEEVFVDIGDEQSIEQSLSTFSSHMTN 398
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I +I+ + LVLLDE+GAGT+P+EG AL MS+L+ + G+ TIATTH+ ELK
Sbjct: 399 IVSILQKVNKNCLVLLDELGAGTDPIEGAALAMSILDTLHKIGA-KTIATTHYSELKQYA 457
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
ENA +EF+ LKPTYK++ G+PG+S+A I++RLGLP +++NAR+ +
Sbjct: 458 LKAPGVENASVEFNVETLKPTYKLIIGLPGKSNAFEISKRLGLPQQIIENARKYISGEAL 517
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFL 672
+ ++I ++E K + LE ++ FL
Sbjct: 518 KFEDIIADVES-KRRELEKANQEIAFL 543
>gi|146296717|ref|YP_001180488.1| MutS2 family protein [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|238685558|sp|A4XK62.1|MUTS2_CALS8 RecName: Full=MutS2 protein
gi|145410293|gb|ABP67297.1| MutS2 family protein [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 787
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 222/796 (27%), Positives = 382/796 (47%), Gaps = 123/796 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L+ LE+DK+ + + A+++ +E + S N ++ L +DE + K+G
Sbjct: 4 KTLKALEYDKIVEILKNMAKSTPAKEYFENLIPSTNLADIENELNKVDEGYRYV--LKYG 61
Query: 111 SC-SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ +L+ + SL KS + + L P+E L + +L+ S +R+ + D
Sbjct: 62 NPPTLEFENILPSLKKSKL-----GATLNPHEILQIGKVLKLS----YEMRSYLSYTQD- 111
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
F L M +L + +I I Q I D+ASP LK+ R +++ LE ++ +
Sbjct: 112 ---FSFLESMKKRLVNLKEVISRIDQTFLTADEILDTASPRLKEIRDRIRKLESRIRDEL 168
Query: 230 DMLIRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
+ +IR+ + E + +I G +L + A+ + KG++ S++G +EP V
Sbjct: 169 NSMIRDPKIQRFLQEPIITIRGEKLLLPVKAEFRNEVKGIVHDQSATGATLFVEPFVCVE 228
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
++++++ ++ + E +L ++ + DEIE +++LD+V +A ++ +
Sbjct: 229 ISNQIRILKSQEKEEIERILQEISSLIASYCDEIETSFYALVELDIVFTKAIWAKEMNAS 288
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
+PV +++S I L KA HPL+
Sbjct: 289 ----------------KPV---INTS---GIINLKKARHPLI------------------ 308
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
+KD VPIDI + + VL+ITGPNT
Sbjct: 309 ------------------QKD----------------KVVPIDIHLGKDFDVLIITGPNT 334
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKTVGL ++ +SG+ I + E +++ F +FADIGD+QS+ QSLSTFS H+K
Sbjct: 335 GGKTVTLKTVGLFCLLCQSGIFIPADEDSQLCIFQKIFADIGDDQSIVQSLSTFSAHMKN 394
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I I + ++LVLLDEIGAGT+P EG AL ++L+ +E GS + IATTH+GELK
Sbjct: 395 IIEITKNADDKTLVLLDEIGAGTDPEEGAALAKAILKYLSEKGSKV-IATTHYGELKIFA 453
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
D FENA EFD LKPTY++L G+PGRS+A+ I+ LGL +V+ AR +
Sbjct: 454 QQEDRFENASCEFDVKTLKPTYRLLIGIPGRSNALVISSNLGLDKGIVEMARGYLSQKTI 513
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKIS 705
+++ +I EME+ + + E++ AR + ++ L +++ +R RK
Sbjct: 514 DLDRIINEMEQKRKEAEENLELARKLKLEAQALKAAYEEEKKRF--ETERERIRK----- 566
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQ 765
A A+ +V ++ ++ R L A+ L+ K + + ++ S Q
Sbjct: 567 KAINEAKEIVERAQYEIENLFKDLRKL----AENLKEKEVLKELEEKKREYERLIQSISQ 622
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEI 825
Q + + + +++I+ +G V+V SF G V + SK +
Sbjct: 623 QEK----QEAESKTKKTLQNIR------------LGQKVYVRSFDAVGFVESLPDSKGNL 666
Query: 826 VVQVGNMKWIMKFTDI 841
VQ+G MK + +DI
Sbjct: 667 TVQIGIMKLNVNISDI 682
>gi|56964440|ref|YP_176171.1| recombination and DNA strand exchange inhibitor protein [Bacillus
clausii KSM-K16]
gi|81678829|sp|Q5WEK0.1|MUTS2_BACSK RecName: Full=MutS2 protein
gi|56910683|dbj|BAD65210.1| MutS family DNA mismatch repair protein [Bacillus clausii KSM-K16]
Length = 787
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 223/794 (28%), Positives = 377/794 (47%), Gaps = 122/794 (15%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA---IEMQKHGS 111
RVLE++K+ + +SLGR+ + S + ++ L DET A + ++ H
Sbjct: 6 RVLEYNKMKQQLLEHVASSLGRQKVNELVPST--SLEEVRHLQDETAEAANVLRLKGH-- 61
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ L G+ S V+ I+ L E + + + L + ++ + I+ D +I
Sbjct: 62 --VPLGGI--SDVRPHIKRAAIGGVLSATELIEIASTLYGGKRVKQFIETIIE---DGHI 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ + K+I Q +D++G + DSAS +L+ R Q++ E + +D
Sbjct: 115 EVPILAGHVEQIEPLSPIEKAIKQCIDDNGYVLDSASTSLRTVRHQIRSYESGIKSKLDQ 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLN 287
L R+ N + + V+ R + + + +F G++ SSSG IEP + V LN
Sbjct: 175 LTRSSNTRKMLSDAIVTIRSDRYVLPVKQEYRGTFGGIVHDQSSSGATLFIEPAAIVTLN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
++L +A+A + E +L L+ K+ + +++ ++ + QLD + A+A Y+ + P
Sbjct: 235 NQLTEAKAKEKREIERILRELSAKVAEESEQLLLNVDKLAQLDFICAKAYYAKAVKAVKP 294
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+ ++R + + L +A HPLL
Sbjct: 295 TL---------------------NDRGY-LDLRQARHPLL-------------------- 312
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
+ PS+M + + R LVITGPNTGG
Sbjct: 313 -----------------PPDKVVPSDMAI---------------GDQVRSLVITGPNTGG 340
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT+GL +MA+SGL + ++E ++ F+ +FADIGDEQS+ QSLSTFS H+K I
Sbjct: 341 KTVTLKTIGLLTLMAQSGLFVPAAEETELAVFEHIFADIGDEQSIEQSLSTFSSHMKNIV 400
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
+I+++ SL+L DE+GAGT+P EG AL +S+L+ + G+ L +ATTH+ ELK Y+
Sbjct: 401 SILNEMNENSLILFDELGAGTDPTEGAALAISILDHVYKRGA-LAVATTHYSELKGYAYN 459
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
+ NA +EFD L+PTY++L GVPGRS+A I+ RLGL ++ A+ + ++++
Sbjct: 460 REGALNASVEFDVETLRPTYRLLVGVPGRSNAFAISRRLGLDERIIDQAKLQIDSDASQV 519
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
++I +E + A + L ++L +R +++ +A
Sbjct: 520 EKMIASLEDSQKSAQSEWSRAEAVRREAEALKRDL------------EKRMASFEEMKEA 567
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
A + A+++ +A + L+ +LR L V +H L +Q
Sbjct: 568 AL---QKAEQKAEKVVAAAQENAELI---ISELR-----DLQKQGVAVKEHQLIEARKQL 616
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
+ P S + KQ+ + KR LP GD V V SF +KGTV+K + E V
Sbjct: 617 ---EEAAPKLVSKKRKQVKKQAEKAKR--LPEPGDEVKVLSFNQKGTVVK-KIGDNEYQV 670
Query: 828 QVGNMKWIMKFTDI 841
Q+G MK + DI
Sbjct: 671 QLGIMKMAVPIDDI 684
>gi|167037192|ref|YP_001664770.1| recombination and DNA strand exchange inhibitor protein
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167040669|ref|YP_001663654.1| recombination and DNA strand exchange inhibitor protein
[Thermoanaerobacter sp. X514]
gi|300914710|ref|ZP_07132026.1| MutS2 family protein [Thermoanaerobacter sp. X561]
gi|307724056|ref|YP_003903807.1| MutS2 family protein [Thermoanaerobacter sp. X513]
gi|320115610|ref|YP_004185769.1| MutS2 family protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166854909|gb|ABY93318.1| MutS2 family protein [Thermoanaerobacter sp. X514]
gi|166856026|gb|ABY94434.1| MutS2 family protein [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|300889645|gb|EFK84791.1| MutS2 family protein [Thermoanaerobacter sp. X561]
gi|307581117|gb|ADN54516.1| MutS2 family protein [Thermoanaerobacter sp. X513]
gi|319928701|gb|ADV79386.1| MutS2 family protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 791
Score = 252 bits (643), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 186/622 (29%), Positives = 303/622 (48%), Gaps = 98/622 (15%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGS 111
+++ LE+DK+ + + + LG++ L I + ++ R LD N AI + +G
Sbjct: 9 AIKSLEFDKIVEFIVGYCDSDLGKQKALD--IVIKKDIEEIERELDLLNEAISFISSYGG 66
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
S + + I++ + S L E L + L ++ + +++D ++
Sbjct: 67 ISFAFEDI-----RDYIKKAQIDSVLYNQELLKIKKFLNLVSQIKGYFKNL--QESDRFV 119
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
R + ++ + ++L K I ++ + I D ASP LK R Q + K+ ++
Sbjct: 120 RLKEYDKKVLPI---KNLEKRIENIIISEDEIADDASPMLKALRRQKLSINEKIRATLNS 176
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
+I E ++ GR + + S FKG++ SSSG IEP+ V LN+E
Sbjct: 177 IISTRQKELQEPIITVRQGRYVVPVKQEYRSTFKGIVHDQSSSGATLFIEPMQVVDLNNE 236
Query: 290 LQQARASVTKAEEDVLLALTEKM----QVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
L+Q + + +L L++++ Q+ ++IE + +LD + A+A YSL
Sbjct: 237 LRQVELKEKQEIQRILFELSQEVKKYSQILFNDIEI----VSELDFIFAKAKYSLKLKAV 292
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
P + ++ + I L KA HPL+ Q
Sbjct: 293 RPEL-------NTMGY---------------INLKKARHPLINQ---------------- 314
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
E+ P+ DI I ++ LVITGPNT
Sbjct: 315 ----------------------------------EVVVPI--DIHIGKQFNTLVITGPNT 338
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKTVGL +MA +GL+I + E ++V F+ VF DIGDEQS+ QSLSTFS H+
Sbjct: 339 GGKTVTLKTVGLLTLMAMAGLNIPAEEKSQVSIFEEVFVDIGDEQSIEQSLSTFSSHMTN 398
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I +I+ + LVLLDE+GAGT+P+EG AL MS+L+ + G+ TIATTH+ ELK
Sbjct: 399 IVSILQKVNKNCLVLLDELGAGTDPIEGAALAMSILDTLHKIGA-KTIATTHYSELKQYA 457
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
ENA +EFD LKPTYK++ +PG+S+A I++RLGLP +++NAR+ +
Sbjct: 458 LKIPGVENASVEFDVETLKPTYKLIISLPGKSNAFEISKRLGLPQQIIENARKYISGEAL 517
Query: 646 EINEVIIEMERFKTQFLEHVHE 667
+ ++I ++E + + + HE
Sbjct: 518 KFEDIIADVESKRRELEKANHE 539
>gi|365905349|ref|ZP_09443108.1| MutS family DNA mismatch repair protein [Lactobacillus
versmoldensis KCTC 3814]
Length = 784
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 225/799 (28%), Positives = 374/799 (46%), Gaps = 138/799 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSL--RLLDETNAAIEMQKH 109
++L VLE+DK+ ++ + TS G+ T L + +S+ RL+D+T +++ +
Sbjct: 4 KALSVLEFDKIKDEIAKYLITSRGK----TLLKKLMPMSVESIVHRLIDQTKDGMDIVR- 58
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALL-------QFSETLQLSLRAA 162
++ L + +++ L E A+ +L QF ET+
Sbjct: 59 --LKGEIPVRKLDDLHDQANRLKKDGNLNGTELAAIGQVLKNTSELKQFFETMH------ 110
Query: 163 IKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLE 222
D I L + +L N L K I Q VDE G + D+AS L R Q+ L
Sbjct: 111 -----DDEITLRELYNLSDKLIDNPQLTKRINQSVDESGRLLDTASDDLGYIRNQINKLN 165
Query: 223 RKLYQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIE 279
++ M+ R + + L + ++ R + + + F G++ S+SG IE
Sbjct: 166 DQIRHSMEQFTRGKGTKYLTEAIVTLRDDRFVVPVKTEYRAKFGGVVHDQSASGQTLYIE 225
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
P S V +N++L A+ S E +L L++ ++ D+ +I + + D++NA+A Y+
Sbjct: 226 PQSVVGMNNQLHDAQTSERLEEIKILGELSDLVRPDISDILNNNEVLAEFDLINAKAKYA 285
Query: 340 LSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAW 399
T EP+ S R+ + L +A HPL+
Sbjct: 286 NQIKAT----------------EPLVS------RDNIVDLKQAKHPLI------------ 311
Query: 400 KDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLV 459
P ++ V DI I + ++
Sbjct: 312 ------------------------------DPDKI----------VANDIKIGDDYKTML 331
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
ITGPNTGGKTI +KT+GL +MA++GL I + E + V FD VF DIGDEQS+ Q+LSTF
Sbjct: 332 ITGPNTGGKTITMKTLGLIQIMAQAGLFIPAHEESHVAVFDEVFVDIGDEQSIEQNLSTF 391
Query: 520 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579
S H+ I NI+ T +SLVL+DE+GAGT+P EG A+ +++LE ++S + +ATTH+
Sbjct: 392 SSHMDNIINIMKNVTDKSLVLIDELGAGTDPQEGAAIAIAILEELSKSDCEI-MATTHYP 450
Query: 580 ELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 639
ELK Y+ NA MEFD+ LKPTY++L G+PG S+A NIA RLG+ VV+ + L
Sbjct: 451 ELKIYAYNTQDTINASMEFDDKSLKPTYRLLIGIPGASNAFNIASRLGMNSSVVERGKSL 510
Query: 640 YGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFR 699
S ++N +I ++E + +F + + L + L KN +++ E +QR
Sbjct: 511 MSGESQDLNNMISDLENRRKEFENNNQK------LEQQLAKN-----KEVEEDYENQR-D 558
Query: 700 KVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHV 759
+++K D+ A + A Q+ S + + ++L S K+ +
Sbjct: 559 QLEKSKDSEIKAAKI---RANQIVSSTKKKTEKIIDHLKELERSGVAV-------KDDQI 608
Query: 760 LTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVE 819
+++ + + E AT + V++ R K+ + VGD V +G+ GT+I+ +
Sbjct: 609 ISARTDLKNLHQDE--ATKKNRVLR------RAKKRQQLKVGDEVKAIPYGQIGTIIR-K 659
Query: 820 PSKEEIVVQVGNMKWIMKF 838
+ VQ+G +K MKF
Sbjct: 660 NKDNQYEVQLGILK--MKF 676
>gi|126695576|ref|YP_001090462.1| DNA mismatch repair protein MutS family protein [Prochlorococcus
marinus str. MIT 9301]
gi|126542619|gb|ABO16861.1| putative DNA mismatch repair protein MutS family [Prochlorococcus
marinus str. MIT 9301]
Length = 803
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 197/649 (30%), Positives = 323/649 (49%), Gaps = 104/649 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ES+ +LEWD L +SSFA T +G+ A L+ + I Y+ S RLL+ET +++ +
Sbjct: 19 ESISLLEWDSLKTHLSSFALTEMGKRAILS--FDIPSEYESSKRLLNETVEITQLENNLD 76
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
S+ +GV D+S R ++ LL+ ++T+ AA + +
Sbjct: 77 KSISFSGVFDIS---------RNIEICSKGGVISSSELLEIAKTI-----AAARNLKKIL 122
Query: 171 IRF--MPLTQMIMQLFVNRSLIKSIMQV-VDEDGSIKDSASPALKQSRGQV--QMLERKL 225
+ F P + ++ I++I + ++ +G I D+AS L R + + LERK+
Sbjct: 123 LDFEQRPYISSFTKNLIDHQNIETIFKKGIESNGRISDNASNELSILRKEFLSKKLERKI 182
Query: 226 YQLMDMLIRNENNESLFLEVSSI---HGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEP 280
L++ I+ +L+ ++I +GR + + + FKG++ SSSSG EP
Sbjct: 183 --LVEKFIQKN---LAYLQDTTIGDRYGRPVLAVKVNYVDKFKGIIHDSSSSGNTVYFEP 237
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
S V +++ A +T E +L + + + + + +M +++L+ R+ YS
Sbjct: 238 DSVVNKGNKIASLEARITAEEFKLLKKWSLVVSDNSENLIEMAAILLRLENALTRSRYSK 297
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
GG +P + P+ S + + HPLL+ +HK+K
Sbjct: 298 WIGGKTP----------TFEKSPIISLIGFT------------HPLLIWEHKKKGA---- 331
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
PV +D +I R +V+ I
Sbjct: 332 -----------------------------------------CPPVAVDFYINRNIKVVAI 350
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT LK +GL+++MA++GL I S+ +P+ +++ DIGD QSL ++LSTFS
Sbjct: 351 TGPNTGGKTAALKGLGLSLLMARAGLLIPSTNNPIIPFCPNIYVDIGDNQSLEENLSTFS 410
Query: 521 GH---LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
GH +K+I +++ S+VLLDEIG+GT+PLEG+AL M+LL+ FA S +T ATTH
Sbjct: 411 GHISRIKEILDLLDHKKGLSVVLLDEIGSGTDPLEGSALAMALLKEFANK-SDITFATTH 469
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL-PGIVVQNA 636
+G++K LKY++ FEN + FDE LKP Y + WG+PGRS+A++I++R+GL I+ + A
Sbjct: 470 YGDIKALKYNDSRFENVSVAFDEDSLKPKYILNWGIPGRSNALSISKRIGLDESILNEAA 529
Query: 637 RQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRT 685
L IN +I +E K + A + + LH L R
Sbjct: 530 NYLKPKEVDNINSIIKGLEEEKIKQQNSAEAAAELIARTEILHDELKRN 578
>gi|403237728|ref|ZP_10916314.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. 10403023]
Length = 786
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 224/794 (28%), Positives = 381/794 (47%), Gaps = 122/794 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L+VLE+DK+ + +SLGRE + S N ++ + L ++T+ A ++ + G+
Sbjct: 6 LKVLEFDKVKEQLKQHVSSSLGREKVDKMIPSTN--VEEVIFLQEQTDEAAKVLRLKGNV 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
L L+ +++A++ L E L + + ++ + I++D +L I
Sbjct: 64 PLG----GLTDIRAAVKRASIGGALNTLELLDIAGTIYAGRQMKKFIEGMIEDDIELPI- 118
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
L ++I + L + I +D++G + D AS L+ R Q++ E ++ + +D +
Sbjct: 119 ---LAELITSITPLYELEQKIKNCIDDNGVVMDGASDKLRGIRQQLRSSEARIREKLDHI 175
Query: 233 IRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
IR+ + + + ++ + R I + G ++ SSSG IEP S V LN+
Sbjct: 176 IRSSSAQKTLSDAIITIRNDRYVIPVKQEYRGTYGGIVHDQSSSGATLFIEPQSVVDLNN 235
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
LQ+AR + + +L L+ ++ ++ + + + ++ + +LD + +A+YS G+ P
Sbjct: 236 VLQEARVKEKQEIDRILFELSNEVALETESLYQNVDTLGELDFMFTKASYSKKVKGSKPK 295
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
I + + K HPL+ A KD+ + E
Sbjct: 296 I----------------------NGNGYVLIKKGRHPLI----------APKDVVPNDIE 323
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
L G+K T+ +VITGPNTGGK
Sbjct: 324 L-------------GKKYTS-----------------------------IVITGPNTGGK 341
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GL +MA+SGL I + E +++ F+SV+ADIGDEQS+ QSLSTFS H+ I +
Sbjct: 342 TVTLKTIGLLTIMAQSGLQIPAQEESEIAVFESVYADIGDEQSIEQSLSTFSSHMVNIVD 401
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I+ + S SLVL DE+GAGT+P EG AL +S+L+ G+ + IATTH+ ELK Y+
Sbjct: 402 ILKRVDSTSLVLFDELGAGTDPQEGAALAISILDEVYNRGARV-IATTHYPELKAYGYNR 460
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
+ NA +EFD L PTYK+L GVPGRS+A I++RLGL ++ A+ + + +
Sbjct: 461 EGVINASVEFDIETLSPTYKLLIGVPGRSNAFEISKRLGLSDTIIHAAKSHISSETNTVE 520
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+I +E+ K + EA + LHK L + +I+E QR + +K
Sbjct: 521 NMIASLEKSKKDAERELDEAEGIRKQAEILHKQL---QEQIIEFN-EQRDKLYEKAE--- 573
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHK-RAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
K+ + + + ++A ++ R +L QSL V ++Q + +
Sbjct: 574 -------RKAEETIKNATTEAEEVIRDLRKMKLE---QQSL----VKEHQLIEAKKRLEN 619
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
V P T+ + + I + + KR +P GD V V S +KG +I+ E V
Sbjct: 620 AV-----PQTSKKTNKQAI--ASKAKRKLVP--GDEVKVISLNQKGHLIE-NTGNNEWQV 669
Query: 828 QVGNMKWIMKFTDI 841
Q+G +K +K D+
Sbjct: 670 QIGILKMKVKEKDL 683
>gi|291533994|emb|CBL07107.1| Mismatch repair ATPase (MutS family) [Megamonas hypermegale
ART12/1]
Length = 611
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 174/522 (33%), Positives = 260/522 (49%), Gaps = 90/522 (17%)
Query: 189 LIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VS 246
L + I +VDE GS++DSAS L + R +++ +R++ +D +++N + + F + V+
Sbjct: 128 LEREIDNIVDEHGSMRDSASVELMRIRREIKSSQRRIKTNLDGILKNPDYQKYFQDNIVT 187
Query: 247 SIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDV 304
R I + + F G++ SSSG IEP+S V LN++++Q + E +
Sbjct: 188 IRDERYVIPIKQEYRQQFPGVVHDQSSSGSTLFIEPMSIVDLNNDIKQLVIDEKREIERI 247
Query: 305 LLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPV 364
L ++EK+ + D + + QLD A+A + T P I
Sbjct: 248 LKVISEKIARNADSLLHNCEIMAQLDFAFAKAKLARKMHATMPEI--------------- 292
Query: 365 TSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGE 424
E + L KA HPLL
Sbjct: 293 -------NDEGIVNLAKARHPLL------------------------------------N 309
Query: 425 KDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKS 484
KD + VPIDI + R L+ITGPNTGGKT+ +KT+GL V+M +S
Sbjct: 310 KD----------------NVVPIDIRLGEGYRTLLITGPNTGGKTVSMKTLGLLVLMTQS 353
Query: 485 GLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEI 544
GL I +K+ F +V+ADIGDEQS+ QSLSTFS H++ I NI++ L+LLDE+
Sbjct: 354 GLFIPVQSGSKISIFQNVYADIGDEQSIEQSLSTFSAHMRNIVNILNNIEHDDLLLLDEV 413
Query: 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLK 604
G+GT+P EG AL MS+LE E G+ T+ATTH+ ELKT YS + ENAC+EFD L+
Sbjct: 414 GSGTDPEEGAALAMSILERLMEIGA-CTVATTHYNELKTFAYSKEGIENACVEFDIKSLR 472
Query: 605 PTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEH 664
PTY++L G PG S+A I++RLGL ++ A+QL A A+ V+ +E K + +
Sbjct: 473 PTYRLLIGTPGASNAFAISKRLGLSDTLILRAQQLIKADHAQFENVLNTLENEKLMYEQK 532
Query: 665 VHE-----------ARHFLMLSRNLHKNLLRTRRKILEHCAS 695
+ + + + + K +T RK E CAS
Sbjct: 533 NADIAERQQRIEKLEKQLADMKQEMAKKKEQTLRKTKEQCAS 574
>gi|332686481|ref|YP_004456255.1| recombination inhibitory protein MutS2 [Melissococcus plutonius
ATCC 35311]
gi|332370490|dbj|BAK21446.1| recombination inhibitory protein MutS2 [Melissococcus plutonius
ATCC 35311]
Length = 789
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 208/666 (31%), Positives = 318/666 (47%), Gaps = 105/666 (15%)
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L I QL + SL + I + EDG++ D ASP LK R + ER + + ++
Sbjct: 114 IEFYNLYTWIDQLVILSSLTRQIKVAITEDGAVTDEASPELKNIRQMIHKNERAVREKLE 173
Query: 231 MLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLN 287
LIR +N L + ++ R I + + +F G++ S+SG IEP V LN
Sbjct: 174 ELIRGKNARYLSDSIITMRNERYVIPVKQEHKNTFGGVVHDQSASGQTLFIEPKQIVELN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + +L L+ ++ EI + I LD +NA+A + G +
Sbjct: 234 NHLRQLQIAERTEINRILAELSAELAPYYKEILRNAEIIGTLDFINAKADF-----GKNL 288
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+P+ +++ I+L +A HPL
Sbjct: 289 KAIVPKINEKN-----------------HIFLKQARHPL--------------------- 310
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
L+ V DI I + +VITGPNTGG
Sbjct: 311 -------------------------------LDHDKAVSNDITIGEDYQTIVITGPNTGG 339
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KTI LKT+GL +M +SGL I ++ +++ F +FADIGDEQS+ Q+LSTFS H+ I
Sbjct: 340 KTITLKTIGLLQLMGQSGLPIPVNDNSQIGIFKEIFADIGDEQSIEQNLSTFSSHMTNIV 399
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
+II + SLVLLDE+GAGT+P EG AL +S+L+A + TIATTH+ ELK Y+
Sbjct: 400 SIIEKVDKNSLVLLDELGAGTDPQEGAALAISILDAL-NTKQAYTIATTHYPELKIYGYN 458
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
NA MEF+ L PTY++L GVPGRS+A +I++RLGL ++ ARQ+ S E+
Sbjct: 459 RSGTINASMEFNIDTLSPTYRLLIGVPGRSNAFDISKRLGLNTKIIDEARQIMNGDSQEL 518
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
NE+I ++E + EAR+FL + L L +++ + +R +++K A
Sbjct: 519 NEMIADLENRRKMAETEYKEARYFLNEAEQLQTEL----KEVYRYLHQERENEMEK---A 571
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
A S+V K+ ++ + R + QQ Q + + SN QQT
Sbjct: 572 NKQANSIVKKAQEEADAIIKEIRKMQLNTNQQTTIKEHQLIDAK-------IKLSNLQQT 624
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
EH ++ K + K + N GD V V ++G+ GT++K + KE V
Sbjct: 625 E----EH--------LEKNKVLKKAKAKKQLNAGDEVIVETYGQHGTLLK-KLDKEHWQV 671
Query: 828 QVGNMK 833
Q+G +K
Sbjct: 672 QLGILK 677
>gi|157693276|ref|YP_001487738.1| recombination and DNA strand exchange inhibitor protein [Bacillus
pumilus SAFR-032]
gi|157682034|gb|ABV63178.1| recombination and DNA strand exchange inhibitor protein MutS2
[Bacillus pumilus SAFR-032]
Length = 786
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 233/801 (29%), Positives = 371/801 (46%), Gaps = 138/801 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREAT--LTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ V S+ ++LG+E LT L I +T Q L + E I ++ GS
Sbjct: 7 LSSLEFHKVKEKVMSYTASTLGKERAQDLTPLTDI-ETIQHLLEEVAEAQDVIRLK--GS 63
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++ A++ S L P+E + + LL + ++ L + ++ D+
Sbjct: 64 APFG----GLTDIRRAVKRAEIGSTLSPSELMEIAGLLYAVKNMKHFLTSMYEDGVDIP- 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
R + ++ L + K I + ++G + D A+PAL+ R Q++ LE K+ ++
Sbjct: 119 RLHTYAETLILL---PDIRKEIESCIGDNGEVLDHATPALRTIRTQLRSLESKVRDKLEA 175
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+IR+++ + + V+ + R I + S G ++ SSSG IEP V +N
Sbjct: 176 MIRSQSASKMLSDTIVTIRNDRFVIPVKQEYRSNYGGIVHDQSSSGATLFIEPQVVVDVN 235
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQQ R + E +L LTE + + E+ + + LD + A+A Y+ + T P
Sbjct: 236 NTLQQTRLKEKQEVEKILQMLTESVSEHIGELLHNVKELQTLDFIFAKAKYAKTEKATKP 295
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+ + IYL +A HP
Sbjct: 296 AV----------------------NDQGEIYLKRARHP---------------------- 311
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
L P + V+ DI + + +VITGPNTGG
Sbjct: 312 ---------------------LLPRDQVVAN---------DIELGKDFSTIVITGPNTGG 341
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT+GL +M ++GLHI E ++V FD VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 342 KTVTLKTLGLLTLMTQAGLHIPVEEGSEVAVFDQVFADIGDEQSIEQSLSTFSSHMVNIV 401
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
+I+ TS SLVL DE+GAGT+P EG AL MS+L+ ++ + + IATTH+ ELK Y+
Sbjct: 402 DILKNLTSNSLVLFDELGAGTDPAEGAALAMSILDEVHQTNARV-IATTHYPELKAYGYN 460
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
+ NA +EFD L PTY++L GVPGRS+A I++RLGLP ++ A+ A E+
Sbjct: 461 REGVTNASVEFDIETLSPTYRLLIGVPGRSNAFEISKRLGLPDHLIDRAKADMHAEHNEV 520
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR-------TRRKILEHCASQRFRK 700
+++I +E K Q E +HE + + LHK L R + K+LE +
Sbjct: 521 DQMIASLEDSKKQAEEELHETEVYRKEAEKLHKELQRQILEWNEQKDKLLEEA---ELKA 577
Query: 701 VQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVL 760
+KI A+ A ++ Q+L S+ RS R +++
Sbjct: 578 KEKIEQASKEAEEII----QELRSIKSEHRSFKEHELIDARKRLEEAV------------ 621
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
F + + V+ +K GD V V +FG+KGT+++ +
Sbjct: 622 -PEFDRKKK------PEPAKKAVRQLKS------------GDEVKVLTFGQKGTLLE-QT 661
Query: 821 SKEEIVVQVGNMKWIMKFTDI 841
+E VQ+G +K +K D+
Sbjct: 662 GDKEWSVQMGILKMKVKEKDM 682
>gi|418329211|ref|ZP_12940290.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis 14.1.R1.SE]
gi|418631982|ref|ZP_13194426.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU128]
gi|420192813|ref|ZP_14698670.1| MutS2 family protein [Staphylococcus epidermidis NIHLM023]
gi|365230873|gb|EHM71948.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis 14.1.R1.SE]
gi|374833651|gb|EHR97326.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU128]
gi|394260629|gb|EJE05438.1| MutS2 family protein [Staphylococcus epidermidis NIHLM023]
Length = 782
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 228/795 (28%), Positives = 370/795 (46%), Gaps = 122/795 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVAELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINETCDAH-DLFDHASYTLQSIRSEISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGFVSAEADALLIAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEDRTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T +E V ++ITGPNTG
Sbjct: 322 T-------------------------------IEFIDDV----------ETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVETLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E+ + + E + ++ H L + ++ Q + K + D
Sbjct: 520 INAMIESLEQNSKRVDQQRIELDRLVREAQQTHDALSK------QYQQYQNYEK--SLMD 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A + A Q SA++ + K + LR + +H L +Q
Sbjct: 572 EAK-------EKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDKKKQ 617
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
D+ E VK IKQ + K+ + + GD V V S+G+KG V+++ EE V
Sbjct: 618 LD-DQYE---------VKSIKQHVQKKKYDTIHTGDEVKVLSYGQKGEVLEL-VGDEEAV 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K + D+
Sbjct: 667 VQMGIIKMKLPIEDL 681
>gi|407978334|ref|ZP_11159166.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. HYC-10]
gi|407415102|gb|EKF36715.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. HYC-10]
Length = 786
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 238/794 (29%), Positives = 381/794 (47%), Gaps = 124/794 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREAT--LTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ V S+ ++LG+E LT L I +T Q L + E I ++ GS
Sbjct: 7 LASLEFHKVKEKVMSYTASTLGKEKAQDLTPLTDI-ETIQHLLEEVAEAQDVIRLK--GS 63
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++ ++ + S L P E + + LL ++ ++ L + ++ D+
Sbjct: 64 APFG----GLTDIRRGVKRAQIGSTLSPLELMEIAGLLYTTKNMKHFLTSMYEDGVDIP- 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
R + ++ L R K I + ++G + D A+PAL+ R Q++ LE K+ ++
Sbjct: 119 RLHTYAESLILLPEVR---KEIESCIGDNGEVLDHATPALRTIRTQLRSLESKVRDKLES 175
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+IR+++ + + V+ + R I + S G ++ SSSG IEP V LN
Sbjct: 176 MIRSQSASKMLSDTIVTIRNDRFVIPVKQEYRSNYGGIVHDQSSSGATLFIEPQVVVDLN 235
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQQ R + E +L LT + +DE+ +N + LD + A+A Y+ + T P
Sbjct: 236 NTLQQTRLKEKQEVEKILQMLTASVSEHIDELLHNVNELQTLDFIFAKAKYAKAEKATKP 295
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
++ + IYL +A HPLL + Q D+E
Sbjct: 296 SV----------------------NEQGEIYLKRARHPLL-----PRDQVVANDIE---- 324
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
+ + +VITGPNTGG
Sbjct: 325 -------------------------------------------LGKDFSTIVITGPNTGG 341
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT+GL +M ++GLHI E ++V FD VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 342 KTVTLKTLGLLTLMTQAGLHIPVEEGSEVAVFDQVFADIGDEQSIEQSLSTFSSHMVNIV 401
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
+I+ T +SLVL DE+GAGT+P EG AL MS+L+ ++ + + IATTH+ ELK Y+
Sbjct: 402 DILKNLTPRSLVLFDELGAGTDPAEGAALAMSILDEVHQTNARV-IATTHYPELKAYGYN 460
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
+ NA +EFD L PTY++L GVPGRS+A I++RLGLP ++ A+ A E+
Sbjct: 461 REGVTNASVEFDIETLSPTYRLLIGVPGRSNAFEISKRLGLPHHLIDRAKADMHAEHNEV 520
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
+++I +E K + E +HE + + LHK L +R+ILE + K+ +
Sbjct: 521 DQMIASLEASKKKAEEELHETEVYRREAEKLHKEL---QRQILEWNEQK-----DKLLEE 572
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
A K+A+++ +A +A ++ Q+LR S+ +H L
Sbjct: 573 AE------QKAAEKIEQAAKEAEDII----QELR-----SIKSEHRSFKEHEL------- 610
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
+D + A + K P K + GD V V +FG+KGT+I+ + +E V
Sbjct: 611 -IDARKRLEEAVPEFDRKKKPEPVKKTSRQLKPGDEVKVLTFGQKGTLIE-QTGNKEWSV 668
Query: 828 QVGNMKWIMKFTDI 841
Q+G +K +K D+
Sbjct: 669 QMGILKMKVKEKDM 682
>gi|297840849|ref|XP_002888306.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297334147|gb|EFH64565.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 891
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 239/832 (28%), Positives = 397/832 (47%), Gaps = 135/832 (16%)
Query: 40 SDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDE 99
+ SDD +S V ++L VLEW LC+ ++ FA TS+G AT + + ++S LLDE
Sbjct: 46 ASSDDSQS-VENQTLEVLEWRALCNQLAPFASTSMGLSATKNAEIPVGNSPEESRNLLDE 104
Query: 100 TNAAIEM------QKHGSCSL-DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFS 152
T AA+ Q+ G + DL+ + V + VR +R L+ +
Sbjct: 105 TAAALAAMEMMESQRLGLSEIQDLSDIVERAVAGQLLTVRELCSVRST-------LMAAT 157
Query: 153 ETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGS-IKDSASPAL 211
Q +AAI + R PL ++ +L + I +D + S I D AS L
Sbjct: 158 SVFQKLRKAAISDK-----RVSPLVGLVQGCDFKDTLQQKIGFCIDCNMSMILDRASEDL 212
Query: 212 KQSRGQVQMLERKLYQLMDMLIRNENNESLFLE-------VSSIHGRLC--IRTGADQLS 262
+ R + R+ + +D L++ + + +F ++ R+C IR L
Sbjct: 213 EIIRSE----RRRNMEKLDSLLKKISTQ-IFQAGGIDRPLITQRRSRMCVAIRATHKSLL 267
Query: 263 FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLA-LTEKMQVDLDEIE 320
G++LS SSS IEP AV LN+ ++ A+ KAEE +L+ LT ++ + +I
Sbjct: 268 PGGVVLSVSSSRATCYIEPKEAVELNN-MEVRHANSEKAEEMAILSILTSEVSMAQKDIL 326
Query: 321 KMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLP 380
+L+ I++LD+ ARA+++ G PN+ + T + + ++ +
Sbjct: 327 HLLDRILELDIAFARASHAKWMNGVYPNV---------TSEHTKTPGLGGDHKSLSVDID 377
Query: 381 KAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALE 440
A HPLLL + G SP++ V
Sbjct: 378 SAQHPLLLGS-----------------------VLG-------------SPNDGMV---- 397
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
PVPIDI + + +V+VI+GPNTGGKT LKT+GL +M+KSG+++ + ++PWFD
Sbjct: 398 --FPVPIDIKVESRAKVVVISGPNTGGKTALLKTLGLISLMSKSGMYLPAKNCPRLPWFD 455
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+ ADIGD QSL QSLSTFSGH+ +I I+ ++ SLVLLDEI +GT+P EG AL S+
Sbjct: 456 FILADIGDPQSLEQSLSTFSGHISRIRQILDIASENSLVLLDEICSGTDPSEGVALATSI 515
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
L+ + ++ + + +TH+G+L LK + F+NA MEF L+PT+++LWG G S+A+
Sbjct: 516 LQ-YIKNRVNVAVVSTHYGDLSRLKDNEPQFQNAAMEFSMETLQPTFRVLWGSTGLSNAL 574
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLML----SR 676
+A+ +G +++NA + + E + +ER K + + E R+ L L +
Sbjct: 575 TVAKSIGFNTGILENAHKWTEKLNPEQD-----VER-KGSLFQSLVEERNKLKLQASKTE 628
Query: 677 NLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR 736
H++L+ + LEH + D R+L+ K Q++ + A+S + K
Sbjct: 629 AFHRDLMNLYHE-LEH----------ESHDLEKRERALLKKETQKVQEDLNSAKSKMQKL 677
Query: 737 AQQLRPS---ASQSLHCTKVGKNQHVLTSNFQQTT---VDKVEHPATASSSVVKDIKQSP 790
+ + A + + + K + + + +D +E P + S
Sbjct: 678 VAEFKSQLEIAQADQYNSLILKTEEAVAEIIEACCPIDLDSIEEPYSDYS---------- 727
Query: 791 RVKRTELPNVGDLVHVSSFGKK-GTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
P G+ V V+ G K GTV++ E ++VQ G ++ +K DI
Sbjct: 728 -------PQAGEKVLVTGLGDKLGTVVEEPGDDETVLVQHGKIRVRIKKKDI 772
>gi|379727500|ref|YP_005319685.1| recombination inhibitory protein MutS2 [Melissococcus plutonius
DAT561]
gi|376318403|dbj|BAL62190.1| recombination inhibitory protein MutS2 [Melissococcus plutonius
DAT561]
Length = 789
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 210/667 (31%), Positives = 320/667 (47%), Gaps = 107/667 (16%)
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L I QL + SL + I + EDG++ D ASP LK R + ER + + ++
Sbjct: 114 IEFYNLYTWIDQLVILSSLTRQIKVAITEDGAVTDEASPELKNIRQMIHKNERAVREKLE 173
Query: 231 MLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLN 287
LIR +N L + ++ R I + + +F G++ S+SG IEP V LN
Sbjct: 174 ELIRGKNARYLSDSIITMRNERYVIPVKQEHKNTFGGVVHDQSASGQTLFIEPKQIVELN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + +L L+ ++ EI + I LD +NA+A + G +
Sbjct: 234 NHLRQLQIAERTEINRILAELSAELAPYYKEILRNAEIIGTLDFINAKADF-----GKNL 288
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+P+ +++ I+L +A HPL
Sbjct: 289 KAIVPKINEKN-----------------HIFLKQARHPL--------------------- 310
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
L+ V DI I + +VITGPNTGG
Sbjct: 311 -------------------------------LDHDKAVSNDITIGEDYQTIVITGPNTGG 339
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KTI LKT+GL +M +SGL I ++ +++ F +FADIGDEQS+ Q+LSTFS H+ I
Sbjct: 340 KTITLKTIGLLQLMGQSGLPIPVNDNSQIGIFKEIFADIGDEQSIEQNLSTFSSHMTNIV 399
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
+II + SLVLLDE+GAGT+P EG AL +S+L+A + TIATTH+ ELK Y+
Sbjct: 400 SIIEKVDKNSLVLLDELGAGTDPQEGAALAISILDAL-NTKQAYTIATTHYPELKIYGYN 458
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
NA MEF+ L PTY++L GVPGRS+A +I++RLGL ++ ARQ+ S E+
Sbjct: 459 RSGTINASMEFNIDTLSPTYRLLIGVPGRSNAFDISKRLGLNTKIIDEARQIMNGDSQEL 518
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
NE+I ++E + EAR+FL + L L +++ + +R +++K A
Sbjct: 519 NEMIADLENRRKMAETEYKEARYFLNEAEQLQTEL----KEVYRYFHQERENEMEK---A 571
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHC-TKVGKNQHVLTSNFQQ 766
A S+V K+ ++ + R + QQ Q + TK+ SN QQ
Sbjct: 572 NKQANSIVKKAQEEADAIIKEIRKMQLNTNQQTTIKEHQLIDAKTKL--------SNLQQ 623
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
T EH ++ K + K + N GD V V ++G+ GT++K + KE
Sbjct: 624 TE----EH--------LEKNKVLKKAKAKKQLNAGDEVIVETYGQHGTLLK-KLDKEHWQ 670
Query: 827 VQVGNMK 833
VQ+G +K
Sbjct: 671 VQLGILK 677
>gi|312135400|ref|YP_004002738.1| muts2 family protein [Caldicellulosiruptor owensensis OL]
gi|311775451|gb|ADQ04938.1| MutS2 family protein [Caldicellulosiruptor owensensis OL]
Length = 786
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 222/813 (27%), Positives = 384/813 (47%), Gaps = 159/813 (19%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTY-QDSLRLLDETNAAIEMQKHG 110
++ R LE+D++ + S A + + L S ++ + Q L ++E I + K+G
Sbjct: 4 KTFRALEYDRILEMLISAAHSEPAKRYFQNLLPSTDKDFIQKELDKVEE--CFIYILKYG 61
Query: 111 SC-SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI----KE 165
+L+ + + L L K+ + + L P+E L V +L+ S+ ++ L A+ K
Sbjct: 62 RPPALEFSDISLILKKAKAQAI-----LTPHEILEVARILKLSQEVKSYLANAVGSCLKS 116
Query: 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
+ LT I Q F+ I D+ASP LK+ R +++ LE ++
Sbjct: 117 SRERLFNLKELTARIDQTFLTPE-------------EILDTASPRLKEIRDRIRRLETRI 163
Query: 226 YQLMDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQL-SFKGLLLS-SSSGIGSVIEPL 281
++ +IR+ + E + ++ G +L + A+ S KG++ S++G +EP
Sbjct: 164 RDELNRMIRDPKIQRFLQEPIITVRGDKLLLPVKAEHKDSIKGIIHDQSATGATLFVEPF 223
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
V ++++++ AR+ + E +L L++ + +EI++ + +LD++ +A ++
Sbjct: 224 VCVEISNQIRVARSEEKEEIEKILQELSQLISDSYNEIKQNFESLSELDILFTKAQWAHQ 283
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
F + +P+ + I L KA HPL+ K+K
Sbjct: 284 FRAS----------------KPILNTAG------YINLKKARHPLI---EKEKV------ 312
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
VPID+ + ++ VLVIT
Sbjct: 313 -------------------------------------------VPIDVHLGKEFDVLVIT 329
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ LKT+GL ++A+SG+ + + E ++V F +FADIGDEQS+ QSLSTFS
Sbjct: 330 GPNTGGKTVTLKTIGLFCLLAQSGMFLPADEGSEVCVFSKIFADIGDEQSIIQSLSTFSA 389
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+K I I + + +LVLLDEIG+GT+P EG AL ++L+ G+ + +ATTH+GEL
Sbjct: 390 HMKNIIEITQNADNSTLVLLDEIGSGTDPEEGAALAKAILKFLHNKGAKV-VATTHYGEL 448
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
KT + FENA EFD LKPTY++L G+PG S+A+ I+ LGL +V+ A+
Sbjct: 449 KTFAQQEERFENASCEFDINTLKPTYRLLIGIPGMSNALYISSNLGLNKEIVELAKSYMS 508
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL-------LRTRRKILEHCA 694
E+ ++I EMER + + E + A + + NL K L +++I E +
Sbjct: 509 KKMLELTDIINEMERKRKELEEVLESANKLKIETENLKKTLEEERRRFEAEKQRIKERAS 568
Query: 695 SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG 754
+ VQ++ D V K ++LR A +SL
Sbjct: 569 KEAREFVQRVEDE-------------------------VEKLFKELRKIA-ESLK----- 597
Query: 755 KNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVK---RTELPN---VGDLVHVSS 808
++ + ++E ++VK I+Q+ + + +++LP +G V+V S
Sbjct: 598 ----------EKEMLKQLEEKKREYENLVKSIEQASQKEEKLQSKLPENLRLGQKVYVKS 647
Query: 809 FGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
F +G V + SK + V++G MK + +DI
Sbjct: 648 FDAEGFVESLPDSKGNLTVRIGIMKLSVNISDI 680
>gi|416124432|ref|ZP_11595428.1| mutS2 protein [Staphylococcus epidermidis FRI909]
gi|319401542|gb|EFV89752.1| mutS2 protein [Staphylococcus epidermidis FRI909]
Length = 782
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 235/799 (29%), Positives = 380/799 (47%), Gaps = 130/799 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQINETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVAELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINEKCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGFVSAEADALLIAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEDRTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T +E V ++ITGPNTG
Sbjct: 322 T-------------------------------IEFIDDV----------ETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVETLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCA-SQRFRKVQKIS 705
IN +I +E Q L+ V + R + L R L+R ++ H A S+++++ Q
Sbjct: 520 INAMIESLE----QNLKRVDQQR--IELDR-----LVREAQQT--HDALSKQYQQYQNYE 566
Query: 706 DAAAIARSLVHKS---AQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTS 762
+SL+ ++ A Q SA++ + K + LR + +H L
Sbjct: 567 ------KSLMDEAKEKANQRVKSATKEADEILKELRNLRDYKGAEV-------KEHELID 613
Query: 763 NFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSK 822
+Q D+ E VK IKQ + K+ + + GD V V S+G+KG V+++
Sbjct: 614 KKKQLD-DQYE---------VKSIKQHVQKKKYDTIHTGDEVKVLSYGQKGEVLEL-VGD 662
Query: 823 EEIVVQVGNMKWIMKFTDI 841
EE VVQ+G +K + D+
Sbjct: 663 EEAVVQMGIIKMKLPIEDL 681
>gi|418634564|ref|ZP_13196957.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU129]
gi|374836787|gb|EHS00364.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU129]
Length = 782
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 228/795 (28%), Positives = 370/795 (46%), Gaps = 122/795 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V S + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSSLVHRASIGGVLNVAELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINEKCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGFVSAEADALLIAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEDRTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T +E V ++ITGPNTG
Sbjct: 322 T-------------------------------IEFIDDV----------ETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVETLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E+ + + E + ++ H L + ++ + S + D
Sbjct: 520 INAMIESLEQNSKRVDQQRIELDRLVREAQQTHDALSKQYQQYQNYETS--------LMD 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A + A Q SA++ + K + LR + +H L +Q
Sbjct: 572 EAK-------EKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDKKKQ 617
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
D+ E VK IKQ + K+ + + GD V V S+G+KG V+++ EE V
Sbjct: 618 LD-DQYE---------VKSIKQHVQKKKYDTIHTGDEVKVLSYGQKGEVLEL-VGDEEAV 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K + D+
Sbjct: 667 VQMGIIKMKLPIEDL 681
>gi|295706821|ref|YP_003599896.1| DNA mismatch repair protein MutS [Bacillus megaterium DSM 319]
gi|294804480|gb|ADF41546.1| DNA mismatch repair protein MutS [Bacillus megaterium DSM 319]
Length = 787
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 232/795 (29%), Positives = 387/795 (48%), Gaps = 123/795 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
VLE++K+ + +SLGRE + S Y++ ++ + T+ A + + G+
Sbjct: 6 FHVLEFNKVKEQLQKKVASSLGREKVANLIPSTQ--YEEVVKWQEATDEATTVLRLRGNV 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
L + V+ +++ L NE L V + + + ++ + + ED DL +
Sbjct: 64 PLG----GIFDVRPSVKRAEIGGTLSSNELLDVASTIYAARQVKQFIEQVV-EDEDLQLP 118
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
+T+ I +L + ++I +DE+G++ D AS L+ R +++ E ++ + ++ L
Sbjct: 119 I--ITEHIEKLMPLPEVEQTIKMSIDENGTVLDGASDQLRGIRQKLRSTESRIREKLESL 176
Query: 233 IRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
IR+ + + + + V+ + R I + S G ++ SSSG IEP + V LN+
Sbjct: 177 IRSSSAQKMLSDAIVTIRNERFVIPVKQEYRSAYGGIVHDQSSSGATLFIEPQAIVTLNN 236
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
ELQ+A+ + E +L+ALT ++ +E+ + + + +LD + A+ YS
Sbjct: 237 ELQEAKVKEKQEIERILIALTVQVAEVANELRQNVYLLGELDFMFAKGRYS--------- 287
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
HE SK ++R + I L KA HPL+ Q+ D+ + + E
Sbjct: 288 ------------HELKASKPKMNDRGY-IKLVKAKHPLIAQE----------DVVANDIE 324
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
L G++ T++ VITGPNTGGK
Sbjct: 325 L-------------GDQYTSI-----------------------------VITGPNTGGK 342
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GL +MA++GL I + + +++ F VFADIGDEQS+ QSLSTFS H+ I +
Sbjct: 343 TVTLKTLGLFTLMAQAGLQIPALDGSEMAVFKHVFADIGDEQSIEQSLSTFSSHMVNIVD 402
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I+ + +SLVL DE+GAGT+P EG AL +S+L+ E G+ + +ATTH+ ELK Y+
Sbjct: 403 ILQKVDHESLVLFDELGAGTDPQEGAALAISILDQVYERGARV-VATTHYPELKAYGYNR 461
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
+ NA +EFD L PTYK+L GVPGRS+A I++RLGL V++ A+ G+ + ++
Sbjct: 462 EGVVNASVEFDIETLSPTYKLLIGVPGRSNAFEISKRLGLSAEVIERAKGYIGSETNKVE 521
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+I +E + Q + EA ++ LHK L + +I+E K K+ + A
Sbjct: 522 NMIASLEDSRRQSEHELEEAEELRKEAQKLHKEL---QSQIIEFN-----EKRDKLYEKA 573
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ AQ +AS+ K LR K+ + H L +
Sbjct: 574 -------EEKAQATVKAASEE---AEKIISDLR----------KMSQKNHALVKEHELIE 613
Query: 769 VDKVEHPATASSSVVKDIKQSPRV--KRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
K A + ++ K+ P V K+ GD V V S+G+KGT+++ S E
Sbjct: 614 ARKRLEDAVPT---LEKSKKKPAVPKKQERTLQAGDEVKVLSWGQKGTLVE-RVSNNEWQ 669
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G MK +K D+
Sbjct: 670 VQMGIMKMKVKEKDL 684
>gi|418411583|ref|ZP_12984850.1| MutS2 protein [Staphylococcus epidermidis BVS058A4]
gi|420167521|ref|ZP_14674174.1| MutS2 family protein [Staphylococcus epidermidis NIHLM087]
gi|394238147|gb|EJD83630.1| MutS2 family protein [Staphylococcus epidermidis NIHLM087]
gi|410892309|gb|EKS40103.1| MutS2 protein [Staphylococcus epidermidis BVS058A4]
Length = 782
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 228/798 (28%), Positives = 371/798 (46%), Gaps = 128/798 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVGELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINEKCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + D D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGLVSADSDALLVAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEDRTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T +E V ++ITGPNTG
Sbjct: 322 T-------------------------------IEFIDDV----------ETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E + + E + ++ H L S+++++ Q
Sbjct: 520 INAMIESLEHNSKRVDQQRIELDRLVREAQETHDAL------------SKQYQQYQNYE- 566
Query: 707 AAAIARSLVHKS---AQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+SL+ ++ A Q SA++ + K + LR + +H L
Sbjct: 567 -----KSLMEEAKEKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDK 614
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+Q D+ E K IKQ + K+ + + GD V V S+G+KG V+++ E
Sbjct: 615 KKQLD-DQYE---------AKSIKQHVQKKKYDTIHAGDEVKVLSYGQKGEVLEL-VGNE 663
Query: 824 EIVVQVGNMKWIMKFTDI 841
E VVQ+G +K + D+
Sbjct: 664 EAVVQMGIIKMKLPIEDL 681
>gi|420198949|ref|ZP_14704633.1| MutS2 family protein [Staphylococcus epidermidis NIHLM031]
gi|394272635|gb|EJE17085.1| MutS2 family protein [Staphylococcus epidermidis NIHLM031]
Length = 782
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 228/795 (28%), Positives = 370/795 (46%), Gaps = 122/795 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVAELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINEKCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGFVSAEADALLIAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEDRTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T +E V ++ITGPNTG
Sbjct: 322 T-------------------------------IEFIDDV----------ETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVETLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E+ + + E + ++ H L + ++ Q + K + D
Sbjct: 520 INAMIESLEQNSKRVDQQRIELDRLVREAQQTHDALSK------QYQQYQNYEK--SLMD 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A + A Q SA++ + K + LR + +H L +Q
Sbjct: 572 EAK-------EKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDKKKQ 617
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
D+ E VK IKQ + K+ + + GD V V S+G+KG V+++ EE V
Sbjct: 618 LD-DQYE---------VKSIKQHVQKKKYDTIHTGDEVKVLSYGQKGEVLEL-VGDEEAV 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K + D+
Sbjct: 667 VQMGIIKMKLPIEDL 681
>gi|420177446|ref|ZP_14683782.1| MutS2 family protein [Staphylococcus epidermidis NIHLM057]
gi|420180254|ref|ZP_14686509.1| MutS2 family protein [Staphylococcus epidermidis NIHLM053]
gi|394247830|gb|EJD93072.1| MutS2 family protein [Staphylococcus epidermidis NIHLM057]
gi|394251293|gb|EJD96392.1| MutS2 family protein [Staphylococcus epidermidis NIHLM053]
Length = 782
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 228/795 (28%), Positives = 370/795 (46%), Gaps = 122/795 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVAELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINEKCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGFVSAEADALLIAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEDRTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T +E V ++ITGPNTG
Sbjct: 322 T-------------------------------IEFIDDV----------ETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVETLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E+ + + E + ++ H L + ++ Q + K + D
Sbjct: 520 INAMIESLEQNSKRVDQQRIELDRLVREAQQTHDALSK------QYQQYQNYEK--SLMD 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A + A Q SA++ + K + LR + +H L +Q
Sbjct: 572 EAK-------EKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDKKKQ 617
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
D+ E VK IKQ + K+ + + GD V V S+G+KG V+++ EE V
Sbjct: 618 LD-DQYE---------VKSIKQHVQKKKYDTIHTGDEVKVLSYGQKGEVLEL-VGDEEAV 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K + D+
Sbjct: 667 VQMGIIKMKLPIEDL 681
>gi|456014379|gb|EMF47994.1| Recombination inhibitory protein MutS2 [Planococcus halocryophilus
Or1]
Length = 786
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 228/800 (28%), Positives = 385/800 (48%), Gaps = 133/800 (16%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWS--INQTYQDSLRLLDETNAAIEMQKHG 110
+LR LE+ K+ V+ + +SLG+ L S INQ RLL++ + ++ +
Sbjct: 6 ALRTLEFYKIRDEVARYCTSSLGKAHVDNLLPSTDINQVN----RLLEQMDEGAQVLRVK 61
Query: 111 SCSLDLTGV-DLSLVKSAIREVRRA---SPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
+ ++ + G+ D+ L + RRA L P E + V + ++ S L+ +ED
Sbjct: 62 N-NVPMGGIFDIRL------QARRAQIGGSLSPMELMEVSSTVRASRILRQFFETIQEED 114
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
F+ + + L V L +I +D++G + DSAS L+ R Q++ E ++
Sbjct: 115 VVQIPHFLEKKESMPILTV---LEHAINVCIDDNGGVLDSASTELRSIRQQLRTQESRVR 171
Query: 227 QLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLS 282
+ ++ L+R +N + + V+ + R I + S G ++ SSSG IEP S
Sbjct: 172 ERLESLVRGKNASKMLSDSIVTIRNDRFVIPVKQEYRSHYGGIVHDQSSSGQTLFIEPDS 231
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
V N+E+++ + + + +LL L+ ++Q E+ +++ + ++D++ A+A Y +
Sbjct: 232 VVQANNEVRRLKMKEKEEIDRILLMLSAQVQEVAHELFVLVDVLGEIDLILAKAKYGSAH 291
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
GT P + E I L KA HP++ +
Sbjct: 292 KGTKPTM----------------------NTEGYINLKKARHPMIPRDE----------- 318
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
+ P++++ R+ +VITG
Sbjct: 319 --------------------------VVPNDIE---------------FGREITAIVITG 337
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKT+ LKTVGLA +MA+SGL + + + +++ FD +FADIGDEQS+ QSLSTFS H
Sbjct: 338 PNTGGKTVTLKTVGLATLMAQSGLPVPALDGSELAVFDQIFADIGDEQSIEQSLSTFSSH 397
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
+ I +I+++ SLV+ DE+GAGT+P EG AL +SLL+ G+ + IATTH+ ELK
Sbjct: 398 MVNIVDILTKFDENSLVIFDELGAGTDPQEGAALAISLLDEVHGRGARV-IATTHYPELK 456
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642
++ NA +EFD L PTY++L GVPGRS+A I++RLGLP ++ +A+ G
Sbjct: 457 AYGFNRPGVANASVEFDVETLSPTYRLLIGVPGRSNAFEISKRLGLPEHIISHAKSFTGT 516
Query: 643 ASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQ 702
S ++ +I +E+ + + + L S L K L + LE Q+ ++ +
Sbjct: 517 DSKAVDSMIASLEKSRREAERDAERTQEVLSESEQLKKELAQQ----LEEYEKQKEQREE 572
Query: 703 KISDAAAIARSLVHKSAQQLCPSASQARSLVHK-RAQQLRPSASQSLHCTKVGKNQHVLT 761
K A AR +V + + ++A S++ + R QL +S H K + L
Sbjct: 573 K---AKEKARKIVDE-------ARAEAESVISELRKMQLNQGSSVKEHELIYAKKR--LE 620
Query: 762 SNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPS 821
Q + K A+ + PN D V V SFG+KGT+++ + S
Sbjct: 621 DAMPQNRILKKAAKDNAAKPL--------------QPN--DEVKVISFGQKGTLVE-KVS 663
Query: 822 KEEIVVQVGNMKWIMKFTDI 841
K E +VQ+G +K + +D+
Sbjct: 664 KNEWIVQIGILKMKLPESDL 683
>gi|57866654|ref|YP_188310.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis RP62A]
gi|242242444|ref|ZP_04796889.1| MutS family DNA mismatch repair protein [Staphylococcus epidermidis
W23144]
gi|418612985|ref|ZP_13176006.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU117]
gi|418626824|ref|ZP_13189420.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU126]
gi|420175070|ref|ZP_14681515.1| MutS2 family protein [Staphylococcus epidermidis NIHLM061]
gi|420234319|ref|ZP_14738884.1| MutS2 family protein [Staphylococcus epidermidis NIH051475]
gi|81674957|sp|Q5HQ30.1|MUTS2_STAEQ RecName: Full=MutS2 protein
gi|57637312|gb|AAW54100.1| MutS2 family protein [Staphylococcus epidermidis RP62A]
gi|242234094|gb|EES36406.1| MutS family DNA mismatch repair protein [Staphylococcus epidermidis
W23144]
gi|374817295|gb|EHR81480.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU117]
gi|374831368|gb|EHR95110.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU126]
gi|394244356|gb|EJD89701.1| MutS2 family protein [Staphylococcus epidermidis NIHLM061]
gi|394304373|gb|EJE47778.1| MutS2 family protein [Staphylococcus epidermidis NIH051475]
Length = 782
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 227/795 (28%), Positives = 369/795 (46%), Gaps = 122/795 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVAELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINETCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGFVSAEADALLIAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEDRTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T +E V ++ITGPNTG
Sbjct: 322 T-------------------------------IEFIDDV----------ETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVETLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E+ + + E + ++ H L + ++ + S + D
Sbjct: 520 INAMIESLEQNSKRVDQQRIELDRLVREAQQTHDALSKQYQQYQNYETS--------LMD 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A + A Q SA++ + K + LR + +H L +Q
Sbjct: 572 EAK-------EKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDKKKQ 617
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
D+ E VK IKQ + K+ + + GD V V S+G+KG V+++ EE V
Sbjct: 618 LD-DQYE---------VKSIKQHVQKKKYDTIHTGDEVKVLSYGQKGEVLEL-VGDEEAV 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K + D+
Sbjct: 667 VQMGIIKMKLPIEDL 681
>gi|254526388|ref|ZP_05138440.1| MutS2 family protein [Prochlorococcus marinus str. MIT 9202]
gi|221537812|gb|EEE40265.1| MutS2 family protein [Prochlorococcus marinus str. MIT 9202]
Length = 803
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 200/651 (30%), Positives = 329/651 (50%), Gaps = 108/651 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ES+ +LEWD L +SSF+ T +G+ A L+ + I Y+ S RLL+ET E++ +
Sbjct: 19 ESISLLEWDSLKVHLSSFSSTEMGKRAILS--FGIPSEYELSKRLLNETVEINELENNLD 76
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
S+ + V D+S R ++ LL+ ++T+ AA + +
Sbjct: 77 KSISFSNVFDIS---------RNIEICSKGGVISSTELLEIAKTI-----AAARNLKKIL 122
Query: 171 IRF--MPLTQMIMQLFVNRSLIKSIMQV-VDEDGSIKDSASPALKQSRGQV--QMLERKL 225
+ F P + ++ +++I + ++ +G I D+AS L R ++ + LERK+
Sbjct: 123 LDFEQRPYISSFTKNLIDHQNVETIFKKGIESNGKISDNASNELSILRKELLSKKLERKI 182
Query: 226 YQLMDMLIRNENNESLFLEVSSI---HGRLCIRTGADQ-LSFKGLLL-SSSSGIGSVIEP 280
L++ I+ +L+ ++I +GR + + + FKG++ SSSSG EP
Sbjct: 183 --LVEKFIQKN---LAYLQDTTIGDRNGRPVLAVKVNYVIKFKGIIHDSSSSGNTVYFEP 237
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
S V +++ A + E +L ++ + + + + +M + +++L+ R+ YS
Sbjct: 238 ESVVTKGNKIASLEARIIAEEFKLLKKWSQIVSDNSENLIEMSSILLRLENALTRSRYSK 297
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
GG +P + P+ S V S HPLL+ +HK+K
Sbjct: 298 WIGGKTP----------TFEKNPIISLVGFS------------HPLLIWEHKKKG----- 330
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
+P PV +D I R +V+ I
Sbjct: 331 -----------------------------APP-----------PVAVDFHINRNIKVVAI 350
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT LK +GL+++MA++GL I S+ +P+ +++ DIGD QSL ++LSTFS
Sbjct: 351 TGPNTGGKTAALKGLGLSLLMARAGLLIPSTNNPIIPFCPNIYVDIGDNQSLEENLSTFS 410
Query: 521 GHLKQIGNIISQSTSQ---SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
GH+ +I I+ ++ S+VLLDEIG+GT+PLEG+AL M+LL+ FA S +T+ATTH
Sbjct: 411 GHISRIKEILDSLNNKKGLSVVLLDEIGSGTDPLEGSALAMALLKEFANK-SDITLATTH 469
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL-PGIVVQNA 636
+G++K LKY++ FEN + FDE LKP Y + WG+PGRS+A++I++R+GL I+ + A
Sbjct: 470 YGDIKALKYTDSRFENVSVVFDEDSLKPKYILNWGIPGRSNALSISKRIGLDENILNEAA 529
Query: 637 RQLYGAASAEINEVI--IEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRT 685
L IN++I +E ER K Q A + + LH L R
Sbjct: 530 NYLRPKEVDNINDIIKGLEEERIKQQ--NSAEAAAELIARTEILHDELKRN 578
>gi|302391195|ref|YP_003827015.1| MutS2 family protein [Acetohalobium arabaticum DSM 5501]
gi|302203272|gb|ADL11950.1| MutS2 family protein [Acetohalobium arabaticum DSM 5501]
Length = 801
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 221/389 (56%), Gaps = 28/389 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPIDI + K LVITGPNTGGKT+ LKTVGL +MA+SGLHI + +K+ FD +
Sbjct: 319 VPIDIKLGGKFDTLVITGPNTGGKTVTLKTVGLLTLMAQSGLHIPALSGSKIAVFDEIHG 378
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ Q+LSTFS H+ +I +I+ + +LVLLDEIGAGT+P EG AL M++LE
Sbjct: 379 DIGDEQSIEQNLSTFSSHMTRIIDILETAQENNLVLLDEIGAGTDPTEGAALAMAILEEL 438
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G + TIATTH+ +LKT Y + +NA +EFD L+PTY++ G+PGRS+A IA
Sbjct: 439 YSRGRINTIATTHYSQLKTFAYQQEGIQNASVEFDVETLQPTYRLQMGMPGRSNAFEIAG 498
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGLP V++ AR E++ +I +E K +E+ AR ++ L K
Sbjct: 499 RLGLPTEVIEKARAKLSEEDIEVDRIIQSIEESKQSIVENEEAARKERKKAKEL-KEEYE 557
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
T+ + +E Q+ +K DA A A ++ +S +++ ++ + Q++ +
Sbjct: 558 TKLEEVEKL-EQKIKK-----DAYAEAEKIIAESKKKVNEVVTEMKEKAEVNQQEVDRAK 611
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
S K+ + ++ L+S VD + D+KQ + +E VGD V
Sbjct: 612 S------KIDEYKYNLSSE----RVD-----------LESDLKQQRIQQNSEDLEVGDKV 650
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
+ K+G +I++ KEE V+Q G MK
Sbjct: 651 RLKKLNKEGEIIELSEDKEEAVIQAGPMK 679
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 32/215 (14%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL + L + I + VD G++ D+AS L+ R + +++ ++ ++ ++ +S
Sbjct: 126 QLDNFKPLERKINKAVDNQGNVLDTASTKLRNIRRSITDYSQRIKDKLNSILSSKKYQSY 185
Query: 242 FLE--VSSIHGRLCIRTGAD-QLSFKGLLLSSSSGIGSV-IEPLSAVPLNDELQQARASV 297
+ V+ R I + Q G++ S+ +V IEP++ V LN++L R+ +
Sbjct: 186 IQDSLVTIRDKRYVIPIKSQFQEKVSGIVHDQSASKQTVFIEPMAVVKLNNKL---RSFM 242
Query: 298 TKAEEDVLLALTE---KMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQD 354
+ EE+V LTE +++ +LD I++ L + LD A+A YS G
Sbjct: 243 AEEEEEVYRILTELTYEVREELDRIKETLKLLAWLDFTFAKAEYSFKIEGA--------- 293
Query: 355 MKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQ 389
EPV + +E I L KA HPL+ Q
Sbjct: 294 -------EPVLN------QEEYINLEKARHPLIPQ 315
>gi|427394069|ref|ZP_18887571.1| MutS2 family protein [Alloiococcus otitis ATCC 51267]
gi|425730239|gb|EKU93079.1| MutS2 family protein [Alloiococcus otitis ATCC 51267]
Length = 793
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 214/795 (26%), Positives = 373/795 (46%), Gaps = 133/795 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
+S+ VL++ K+ +S ++ LG++ L S + ++ LL++T + + +
Sbjct: 7 KSIEVLDFPKVKQELSQHTQSDLGKKMALALKPST--SIEEIKMLLNQTGDGVSLLRMKG 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRAS---PLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
G+ ++ +S + +++R S L E +++ +++ + ++ R A +ED
Sbjct: 65 ------GIPVTPFESILPQLKRLSIGGGLNGGEIASIMKIIKNAREIKNFFREA-QEDDI 117
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
+ ++ M+ L L K+I VVDEDG + DSASP LK R ++ +E+ + Q
Sbjct: 118 VLENLYAVSDMLNPL---SDLSKTIQAVVDEDGRVVDSASPKLKGIRTGIKQVEQSIRQK 174
Query: 229 MDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVP 285
++ + R + L + +I + R + AD + G ++ S G +EP S +
Sbjct: 175 LENITRGSKSRYLTDAIITIRNDRYVVPVKADSKNVFGGIVHDQSATGQTLFVEPQSVLN 234
Query: 286 LNDELQQARASVTKAEEDVLLA-LTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
N++L++ S KAE D LLA L++K+ ++E+ L + LD + A+A YS
Sbjct: 235 QNNKLKEY-TSQEKAEVDRLLADLSQKITPYSKDLEQDLQVLTLLDFIAAKAKYSRQLSA 293
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
+ P + RE +Y A HPL+
Sbjct: 294 SQP--------------------IVDDNREIALY--GARHPLI----------------- 314
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
P ++ V DI + + +V+TGPN
Sbjct: 315 -------------------------DPDQV----------VENDITLGLDYKAIVVTGPN 339
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKT+GL +M +SGLH+ + +++ F+ +ADIGDEQS+ QSLSTFS H+
Sbjct: 340 TGGKTVVLKTLGLLQIMGQSGLHLPVKDNSRIGVFEKCYADIGDEQSIEQSLSTFSSHMT 399
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I +I+S +L++LDE+GAGT+P EG AL +++L+ + GS + I T+H+ ELK
Sbjct: 400 NIVSILSDIDEATLIVLDELGAGTDPQEGAALAIAILDYISARGSTVVI-TSHYPELKAY 458
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
Y+ NA M FD LKPTYK+L G+PGRS+A +A+RLGL ++ ++QL S
Sbjct: 459 AYNRPETINASMAFDVNSLKPTYKLLLGIPGRSNAFEVAQRLGLNNEIIAASKQLMSGES 518
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
+N++I ++E + + + + L + LH +L E Q++
Sbjct: 519 QSVNQMIEDLEAKRQAYHKRNQSLQKELYDASKLHNDLKNFYEAYQERS--------QEL 570
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHK-RAQQLRPSASQSLHCTKVGKNQHVLTSN 763
D A + + + AQ+ QA ++ R +QL + ++ +H
Sbjct: 571 EDKAKDKANRIVEKAQE------QADQIIDDLRQKQLNQPSEDNI-------KEHEFIDA 617
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+ + K E + V++ K+ + VGD VHV SF ++GT
Sbjct: 618 KSRLSNMKYEQKHLKQNKVLQKEKEKKALA------VGDQVHVDSFDQEGT--------- 662
Query: 824 EIVVQVGNMKWIMKF 838
+V Q G+ KW+++
Sbjct: 663 -LVDQTGDSKWVVQM 676
>gi|51968460|dbj|BAD42922.1| DNA mismatch repair protein MutS2-like [Arabidopsis thaliana]
Length = 283
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 131/255 (51%), Positives = 182/255 (71%), Gaps = 1/255 (0%)
Query: 22 AITNKNRRGRLFCSTVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLT 81
+I N+NR S+ + + KS+ +SLRVLEWDKLC V+SFARTSLGREAT
Sbjct: 20 SIGNRNRVKLSLISSSSPTLVCHSKSKSQTDSLRVLEWDKLCDVVASFARTSLGREATKK 79
Query: 82 QLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNE 141
+LWS++Q++ +SL+LLDET+AAI+M +HGS LDL+ + +SLV+S IR +R LR ++
Sbjct: 80 KLWSLDQSFSESLKLLDETDAAIKMLEHGSFCLDLSSIHISLVESGIRHAKRRLSLRADQ 139
Query: 142 ALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDG 201
AL V +LL+F E LQL L+AAIK+D D Y RFMPL+++I+ +NRS +K + QV+D DG
Sbjct: 140 ALEVASLLRFFENLQLDLKAAIKQDGDWYKRFMPLSELIVHPVINRSFVKLVEQVIDPDG 199
Query: 202 SIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL 261
+IKDSAS AL+QSR +VQ LERKL QL+D +IR++ ++ + + I GR CI+ ++QL
Sbjct: 200 TIKDSASSALRQSRERVQTLERKLQQLLDAIIRSQKDDESVMLAAEIDGRWCIQMSSNQL 259
Query: 262 -SFKGLLLSSSSGIG 275
S GLLLS G
Sbjct: 260 TSVNGLLLSRWRDCG 274
>gi|27467755|ref|NP_764392.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis ATCC 12228]
gi|293366874|ref|ZP_06613550.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417656654|ref|ZP_12306337.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU028]
gi|417660105|ref|ZP_12309696.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU045]
gi|417909781|ref|ZP_12553514.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU037]
gi|418603410|ref|ZP_13166795.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU041]
gi|418606840|ref|ZP_13170105.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU057]
gi|418609778|ref|ZP_13172912.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU065]
gi|418628985|ref|ZP_13191501.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU127]
gi|418663768|ref|ZP_13225276.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU081]
gi|419772619|ref|ZP_14298650.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-K]
gi|420202124|ref|ZP_14707719.1| MutS2 family protein [Staphylococcus epidermidis NIHLM018]
gi|420206519|ref|ZP_14712029.1| MutS2 family protein [Staphylococcus epidermidis NIHLM008]
gi|420210956|ref|ZP_14716345.1| MutS2 family protein [Staphylococcus epidermidis NIHLM001]
gi|420219527|ref|ZP_14724543.1| MutS2 family protein [Staphylococcus epidermidis NIH04008]
gi|420222048|ref|ZP_14726973.1| MutS2 family protein [Staphylococcus epidermidis NIH08001]
gi|420224910|ref|ZP_14729748.1| MutS2 family protein [Staphylococcus epidermidis NIH06004]
gi|420229273|ref|ZP_14733979.1| MutS2 family protein [Staphylococcus epidermidis NIH04003]
gi|420231637|ref|ZP_14736282.1| MutS2 family protein [Staphylococcus epidermidis NIH051668]
gi|38604826|sp|Q8CPL6.1|MUTS2_STAES RecName: Full=MutS2 protein
gi|27315299|gb|AAO04434.1|AE016746_224 MutS-like protein [Staphylococcus epidermidis ATCC 12228]
gi|291319175|gb|EFE59545.1| DNA mismatch repair protein MutS [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329734429|gb|EGG70742.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU045]
gi|329736315|gb|EGG72587.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU028]
gi|341652390|gb|EGS76178.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU037]
gi|374406114|gb|EHQ77017.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU065]
gi|374406846|gb|EHQ77724.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU057]
gi|374407579|gb|EHQ78432.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU041]
gi|374411187|gb|EHQ81905.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU081]
gi|374834979|gb|EHR98610.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU127]
gi|383359246|gb|EID36676.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-K]
gi|394270097|gb|EJE14620.1| MutS2 family protein [Staphylococcus epidermidis NIHLM018]
gi|394278358|gb|EJE22675.1| MutS2 family protein [Staphylococcus epidermidis NIHLM008]
gi|394282893|gb|EJE27075.1| MutS2 family protein [Staphylococcus epidermidis NIHLM001]
gi|394288952|gb|EJE32849.1| MutS2 family protein [Staphylococcus epidermidis NIH04008]
gi|394290079|gb|EJE33949.1| MutS2 family protein [Staphylococcus epidermidis NIH08001]
gi|394294313|gb|EJE37999.1| MutS2 family protein [Staphylococcus epidermidis NIH06004]
gi|394299039|gb|EJE42590.1| MutS2 family protein [Staphylococcus epidermidis NIH04003]
gi|394302179|gb|EJE45627.1| MutS2 family protein [Staphylococcus epidermidis NIH051668]
Length = 782
Score = 249 bits (635), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 228/798 (28%), Positives = 371/798 (46%), Gaps = 128/798 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVGELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINEKCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGLVSAESDALLVAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + E TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEERTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T +E V ++ITGPNTG
Sbjct: 322 T-------------------------------IEFIDDV----------ETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E + + E + ++ H L S+++++ Q
Sbjct: 520 INAMIESLEHNSKRVDQQRIELDRLVREAQETHDAL------------SKQYQQYQNYE- 566
Query: 707 AAAIARSLVHKS---AQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+SL+ ++ A Q SA++ + K + LR + +H L
Sbjct: 567 -----KSLMEEAKEKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDK 614
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+Q D+ E K IKQ + K+ + + GD V V S+G+KG V+++ E
Sbjct: 615 KKQLD-DQYE---------AKSIKQHVQKKKYDTIHAGDEVKVLSYGQKGEVLEL-VGNE 663
Query: 824 EIVVQVGNMKWIMKFTDI 841
E VVQ+G +K + D+
Sbjct: 664 EAVVQMGIIKMKLPIEDL 681
>gi|420189663|ref|ZP_14695631.1| MutS2 family protein [Staphylococcus epidermidis NIHLM037]
gi|420204084|ref|ZP_14709644.1| MutS2 family protein [Staphylococcus epidermidis NIHLM015]
gi|394260998|gb|EJE05800.1| MutS2 family protein [Staphylococcus epidermidis NIHLM037]
gi|394274098|gb|EJE18523.1| MutS2 family protein [Staphylococcus epidermidis NIHLM015]
Length = 782
Score = 249 bits (635), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 227/795 (28%), Positives = 369/795 (46%), Gaps = 122/795 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVAELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINEKCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGFVSAEADALLIAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEDRTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T +E V ++ITGPNTG
Sbjct: 322 T-------------------------------IEFIDDV----------ETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVETLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E+ + + E + ++ H L + ++ + S + D
Sbjct: 520 INAMIESLEQNSKRVDQQRIELDRLVREAQQTHDALSKQYQQYQNYETS--------LMD 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A + A Q SA++ + K + LR + +H L +Q
Sbjct: 572 EAK-------EKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDKKKQ 617
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
D+ E VK IKQ + K+ + + GD V V S+G+KG V+++ EE V
Sbjct: 618 LD-DQYE---------VKSIKQHVQKKKYDTIHTGDEVKVLSYGQKGEVLEL-VGDEEAV 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K + D+
Sbjct: 667 VQMGIIKMKLPIEDL 681
>gi|194468338|ref|ZP_03074324.1| MutS2 family protein [Lactobacillus reuteri 100-23]
gi|194453191|gb|EDX42089.1| MutS2 family protein [Lactobacillus reuteri 100-23]
Length = 791
Score = 249 bits (635), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 228/790 (28%), Positives = 377/790 (47%), Gaps = 137/790 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQT-YQDSLRLLDETNAAIEMQKHGSC 112
L LE+D++ ++ + ++ GR LTQL + QT Y+ LL ET ++ +
Sbjct: 6 LETLEFDRIKGQLAQYLVSAAGRRE-LTQL--VPQTDYEAVKELLTETTDGADILR---L 59
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L+ +K ++ ++ + L E + +LQ S +S++ + + I+
Sbjct: 60 EDGIPIPQLADIKPQLKRLKIKANLNGTELAQITKVLQTS----MSVKNFFDQMREKKIK 115
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
LT + +L S+ + +++ +D DG I D AS L R + E +++Q M+
Sbjct: 116 LRVLTTQVDRLVTIPSITQRLVRSIDPDGRINDEASAKLHGIRQLITQTETEIHQQMERY 175
Query: 233 IRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
R +N + L + ++ + R I A + F G++ S+SG IEP + V N+
Sbjct: 176 TRGKNAKYLSDPIVTMRNDRYVIPVIARYRNKFGGVVHDQSASGQTLYIEPAAVVETNNR 235
Query: 290 LQQARASVTKAEEDVLLALTEKM---QVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
L+QA+ + + VL+ L++ + + D+ + E +L LD +NA+A ++
Sbjct: 236 LRQAQIEERQEMQRVLIELSQMIAPYRHDIGQNEAILG---HLDFINAKARWA------- 285
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
D K +L P+ SK E + L KA HPL+
Sbjct: 286 ------HDTKATL---PLLSK------ENHVSLRKARHPLI------------------- 311
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
+LRR V DI I + ++ITGPNTG
Sbjct: 312 -DLRR--------------------------------VVTNDIKIGEDCQAIIITGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+G+ +M +SGL I + E + + FD+VFADIGDEQSL Q+LSTFSGH+ +
Sbjct: 339 GKTITLKTLGIIQLMGQSGLFIPAEEGSTIGIFDNVFADIGDEQSLEQNLSTFSGHMDGV 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ Q TS+SLVLLDE+GAGT+P EG AL M++L+ G+++ I TTH+ ELK Y
Sbjct: 399 KAILEQITSRSLVLLDELGAGTDPKEGAALAMAILDNIGSKGTMVVI-TTHYPELKVYGY 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
NA MEFD+ LKPTYK+L G+PGRS+ + IA+RLG+ V+ AR S +
Sbjct: 458 DRAKTINASMEFDQETLKPTYKLLLGIPGRSNGLEIAQRLGINPQVIDEARTFVSDDSQD 517
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+N +I ++ + + E + + + ++L + L QR + ++
Sbjct: 518 LNNMIGDLVEQRKKAREESERLAKLVAKNEKVQRDL----DEKLTRFNEQRDKLYEQ--- 570
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG--KNQHVLTSNF 764
ARS K+ Q+ + +A ++H Q L + G K ++ +
Sbjct: 571 ----ARS---KANHQVSMAKKKADRIIHHLRQ---------LEVQQGGNVKENELIDAQG 614
Query: 765 QQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEE 824
Q + + ++P ++SV++ KQ + + GD V V S+G+ G E
Sbjct: 615 QLNALHR-DNPRLQNNSVLQRAKQKHDLHK------GDAVLVKSYGQYG----------E 657
Query: 825 IVVQVGNMKW 834
++ + GN KW
Sbjct: 658 LLSKRGNHKW 667
>gi|37523206|ref|NP_926583.1| recombination and DNA strand exchange inhibitor protein
[Gloeobacter violaceus PCC 7421]
gi|35214209|dbj|BAC91578.1| glr3637 [Gloeobacter violaceus PCC 7421]
Length = 790
Score = 249 bits (635), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 204/680 (30%), Positives = 317/680 (46%), Gaps = 110/680 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+ +L W +LC ++SFA+T + T L + ++ R L A+ + +
Sbjct: 9 ETRGLLGWARLCAQLASFAQTKAAKGECETLL--PFEARSEAERWLQRAEEALRLAESVP 66
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L GV + S + R L LAV + L + L+ ++ + +L +
Sbjct: 67 GGLAFDGV--HDIASDVERAGRGGLLTGEALLAVASTLAAARRLRRAIEEHSGQAEELAL 124
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQ------------SRGQVQ 219
++ ++ L + I + +D+ G + D AS L+ R +Q
Sbjct: 125 -------LVAEVRTFPELEQEIYRCIDDTGEVADRASEKLRDLRSGHRRLRAEIQRTLLQ 177
Query: 220 MLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLL-SSSSGIGSVI 278
+L+R+ + LI + E + V H DQ+ G++ SS+SG +
Sbjct: 178 LLQRRANCFQESLI-TQRGERFVVPVKVSH--------RDQVP--GIVHDSSASGQTLFV 226
Query: 279 EPLSAVPLNDELQQA-RASVTKAEEDV--LLALTEKMQVDLDEIEKMLNGIIQLDVVNAR 335
EP++ + + L + RA + E + L AL + +L + ++L + LD+ AR
Sbjct: 227 EPMAVIDTTNRLVEGMRAEQVEIERILAELAALVAERATELLHLHRVL---VDLDLAAAR 283
Query: 336 ATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKT 395
A Y+ G P E L + HPLL+
Sbjct: 284 ARYASWLGAVRPRFG-----------------------ERGCGLVQVRHPLLV------- 313
Query: 396 QQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKT 455
W++ T + VP+D+ +
Sbjct: 314 ---WQERHEQGTPV-----------------------------------VPVDLPVDPAV 335
Query: 456 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 515
R +VITGPNTGGKT+ LKT+GL V+MA++GL + + + A +PWFD V ADIGDEQS+ Q+
Sbjct: 336 RAVVITGPNTGGKTVTLKTLGLVVLMAQAGLFVPARDPAVLPWFDRVLADIGDEQSIEQN 395
Query: 516 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 575
LSTFSGH+++I I++ T +LVLLDE+GAGT+P EG AL +LL AE L+ +AT
Sbjct: 396 LSTFSGHIRRIVRILAALTPDALVLLDEVGAGTDPQEGAALARALLVHLAERAGLV-LAT 454
Query: 576 THHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQN 635
TH+GELK LKY+ FENA +EFD L PTY++LWG+PGRS+A+ IAERLGL VV
Sbjct: 455 THYGELKALKYTQSHFENASVEFDLATLSPTYRLLWGIPGRSNALTIAERLGLDAQVVAV 514
Query: 636 ARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCAS 695
A+ E++ VI ++ E V L +LLR + + A+
Sbjct: 515 AQASLSEGDVELDRVIGALQEQLQIQEEQVRSTTRLRGEVERLQSDLLRQQVLLDAREAA 574
Query: 696 QRFRKVQKISDAAAIARSLV 715
R R+ Q++ + A AR+ V
Sbjct: 575 LRARQDQQVREVVAEARAEV 594
>gi|323490483|ref|ZP_08095690.1| MutS2 protein [Planococcus donghaensis MPA1U2]
gi|323395887|gb|EGA88726.1| MutS2 protein [Planococcus donghaensis MPA1U2]
Length = 786
Score = 248 bits (634), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 197/677 (29%), Positives = 329/677 (48%), Gaps = 103/677 (15%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
+LR LE+ K+ V+ + +SLG+ L S + ++E N +E G+
Sbjct: 6 ALRTLEFYKIRDEVARYCTSSLGKAHVDNLLPSTD---------INEVNRLLEQMDEGAQ 56
Query: 113 SLDL-TGVDLSLVKSAIREVRRA---SPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
L + V + + + RRA L P E + V + ++ S L+ I+E+
Sbjct: 57 VLRVKNNVPMGGIFDIRLQARRAQIGGSLSPMELMEVSSTVRASRILR-QFFETIQEEGV 115
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
+ I + M + +L +I +D++G + DSAS L+ R Q++ E ++ +
Sbjct: 116 VQIPHFLEKKESMPILT--ALEHAINVCIDDNGGVLDSASTELRSIRQQLRTQESRVRER 173
Query: 229 MDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAV 284
++ L+R +N + + V+ + R I + S G ++ SSSG IEP S V
Sbjct: 174 LESLVRGKNASKMLSDSIVTIRNDRFVIPVKQEYRSHYGGIVHDQSSSGQTLFIEPDSVV 233
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
N+E+++ + + + +L+ L+ ++Q E+ +++ + ++D++ A+A Y + G
Sbjct: 234 QANNEVRRLKMKEKEEIDRILMMLSAQVQEVAHELFVLVDVLGEIDLILAKAKYGSAHKG 293
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
T P + E I L KA HP++
Sbjct: 294 TKPTM----------------------NTEGYINLKKARHPMI----------------- 314
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
P E VP DI R +VITGPN
Sbjct: 315 --------------------------PKE---------EVVPNDIEFGRDITAIVITGPN 339
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKTVGLA +MA+SGL + + + +++ FD +FADIGDEQS+ QSLSTFS H+
Sbjct: 340 TGGKTVTLKTVGLATLMAQSGLPVPALDGSELAVFDQIFADIGDEQSIEQSLSTFSSHMV 399
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I +I+++ SLV+ DE+GAGT+P EG AL +SLL+ G+ + IATTH+ ELK
Sbjct: 400 NIVDILTKFDENSLVIFDELGAGTDPQEGAALAISLLDEVHGRGARV-IATTHYPELKAY 458
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
++ NA +EFD L PTY++L GVPGRS+A I++RLGLP ++ +A+ G S
Sbjct: 459 GFNRPGVANASVEFDVETLSPTYRLLIGVPGRSNAFEISKRLGLPEHIISHAKSFTGTDS 518
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR------TRRKILEHCASQRF 698
++ +I +E+ + + + + L S L K L + +++ E A ++
Sbjct: 519 KAVDSMIASLEKSRREAEQDAERTQEVLSESEQLKKELAQQLEEYEQKKEQREEKAKEKA 578
Query: 699 RKVQKISDAAAIARSLV 715
RK+ + +A A A S++
Sbjct: 579 RKI--VDEARAEAESVI 593
>gi|407473381|ref|YP_006787781.1| DNA mismatch repair protein MutS [Clostridium acidurici 9a]
gi|407049889|gb|AFS77934.1| DNA mismatch repair protein MutS [Clostridium acidurici 9a]
Length = 792
Score = 248 bits (634), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 218/796 (27%), Positives = 371/796 (46%), Gaps = 136/796 (17%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQ-KHGS 111
+LRVLE+ K+ ++ +SLG E L S+N Y++ L DET+ A+ + K GS
Sbjct: 5 TLRVLEYSKIIEKLTDKTESSLGEEIALKLSPSLN--YEEVKYLQDETDEAVSLLLKRGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADL 169
L + + EV+RA L+ LL+ ++T++ + ++ +K++ D
Sbjct: 63 PPL-------GGIHDVLSEVKRA---EIGGILSPGGLLRVADTIRAARKIKGFLKQEKDE 112
Query: 170 YIRFMP-LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
P L +I L R + +I + + I D+AS L+ R Q+Q+ +
Sbjct: 113 NNSSYPILESLIGDLNSYREIEDNIFNAIVSEEEISDNASSNLRNIRKQIQIKNDNIRTK 172
Query: 229 MDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAV 284
++ +I + N+ + ++ R + + S F GL+ SSSG IEP++ V
Sbjct: 173 LNSIINSSTNKKYLQDAIITIRSERYVVPVKQEYRSIFPGLIHDQSSSGATLFIEPMAIV 232
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+EL++ + + K E +L L+E + + + I + Q+D + A+ SL G
Sbjct: 233 NLNNELKELKLNEKKEIEKILTELSEMVGEENEGIRSNQKILSQIDFIFAKGKLSLDMNG 292
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
+ PNI + R + I + K HPLL
Sbjct: 293 SKPNI---------------------NNRGY-INIKKGRHPLL----------------- 313
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
G KD VP DI++ L+ITGPN
Sbjct: 314 ------------------GVKDV-----------------VPTDIYLGDNFTTLLITGPN 338
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKTVGL +M +SGL + ++ F+++FADIGDEQS+ QSLSTFS H+
Sbjct: 339 TGGKTVTLKTVGLFTLMMQSGLQVPVEHGTEMAVFENIFADIGDEQSIEQSLSTFSSHMT 398
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I +I++ SLVL DE+GAGT+P EG AL MS+L+ + + + T+ATTH+ ELK
Sbjct: 399 NIVDILNNLDDNSLVLFDELGAGTDPTEGAALAMSILD-YLYNRKIRTVATTHYSELKVY 457
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
+ + ENA +EF+ L PTY++L GVPG+S+A I++RLGL ++ +A++ +
Sbjct: 458 ALTTEGIENASVEFNVETLSPTYRLLIGVPGKSNAFEISKRLGLQDFIIDSAKEFISKEN 517
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
+V+ +E+ + + ++ EA N LR L+ ++ K++
Sbjct: 518 IAFEDVLASIEKDRIETEKNREEA------------NRLRREVNQLKEELEEKTLKIE-- 563
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ---QLRPSASQSLHCTKVGKNQHVLT 761
++ I R ++ L + +++ ++++ + ++ S+ L K L
Sbjct: 564 NNREKILREAREEARNVLLKARAESEEILNELKEVSIEIEKEQSRRLQEAK-----EKLK 618
Query: 762 SNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP----NVGDLVHVSSFGKKGTVIK 817
N +D +E D+ + K++ P ++G+ V + S + GTV+
Sbjct: 619 GN-----IDNIEG----------DLSEQILSKKSAKPLASVDIGENVKILSLNQTGTVLS 663
Query: 818 VEPSKEEIVVQVGNMK 833
++VQVG MK
Sbjct: 664 APDENGNVLVQVGIMK 679
>gi|308804283|ref|XP_003079454.1| DNA mismatch repair MutS family protein (ISS) [Ostreococcus tauri]
gi|116057909|emb|CAL54112.1| DNA mismatch repair MutS family protein (ISS) [Ostreococcus tauri]
Length = 1083
Score = 248 bits (633), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 160/221 (72%), Gaps = 6/221 (2%)
Query: 440 ELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWF 499
+L PVP+DIF +++T+V+VITGPNTGGKT +K VGL +MAKSG+ I +E A VP+F
Sbjct: 453 KLRGPVPVDIFASKRTKVVVITGPNTGGKTAAMKAVGLVAIMAKSGIFI-PAERAVVPFF 511
Query: 500 DSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 559
D V DIGD+QSL SLSTFSG L + I+ Q T +SLVL+DE+G GT+P EG A+G +
Sbjct: 512 DKVLVDIGDDQSLLTSLSTFSGRLTRAQAILEQCTPESLVLMDEVGTGTSPAEGAAIGYA 571
Query: 560 LLEAFA-----ESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVP 614
LL+A A + G+ LT ATTHHG+LK LKY ++ FENA +EFDE L+PTYK+LWGVP
Sbjct: 572 LLKALAGIVPGQLGACLTFATTHHGQLKALKYEHEEFENAAVEFDEADLRPTYKLLWGVP 631
Query: 615 GRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEME 655
GRSSA+ IA R L V++ AR++ G +++ I ++E
Sbjct: 632 GRSSALQIATRFNLSVDVIEEAREVLGEGLVSLDDTISKLE 672
>gi|419768706|ref|ZP_14294822.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-250]
gi|383359532|gb|EID36955.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-250]
Length = 694
Score = 248 bits (633), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 227/798 (28%), Positives = 369/798 (46%), Gaps = 128/798 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVGELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINEKCDA-HDLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGLVSAESDALLVAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + E TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEERTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T I ++ITGPNTG
Sbjct: 322 T-----------------------------------------IEFIDDVETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E + + E + ++ H L S+++++ Q
Sbjct: 520 INAMIESLEHNSKRVDQQRIELDRLVREAQETHDAL------------SKQYQQYQNYE- 566
Query: 707 AAAIARSLVHKS---AQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+SL+ ++ A Q SA++ + K + LR + +H L
Sbjct: 567 -----KSLMEEAKEKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDK 614
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+Q D+ E K IKQ + K+ + + GD V V S+G+KG V+++ E
Sbjct: 615 KKQLD-DQYE---------AKSIKQHVQKKKYDTIHAGDEVKVLSYGQKGEVLEL-VGNE 663
Query: 824 EIVVQVGNMKWIMKFTDI 841
E VVQ+G +K + D+
Sbjct: 664 EAVVQMGIIKMKLPIEDL 681
>gi|418325075|ref|ZP_12936285.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU071]
gi|420185530|ref|ZP_14691622.1| MutS2 family protein [Staphylococcus epidermidis NIHLM040]
gi|365228981|gb|EHM70153.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU071]
gi|394254516|gb|EJD99485.1| MutS2 family protein [Staphylococcus epidermidis NIHLM040]
Length = 782
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 227/798 (28%), Positives = 371/798 (46%), Gaps = 128/798 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVGELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINEKCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGLVSAESDALLVAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEDRTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T +E V ++ITGPNTG
Sbjct: 322 T-------------------------------IEFIDDV----------ETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E + + E + ++ H L S+++++ Q
Sbjct: 520 INAMIESLEHNSKRVDQQRIELDRLVREAQETHDAL------------SKQYQQYQNYE- 566
Query: 707 AAAIARSLVHKS---AQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+SL+ ++ A Q SA++ + K + LR + +H L
Sbjct: 567 -----KSLMEEAKEKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDK 614
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+Q D+ E K IKQ + K+ + + GD V V S+G+KG V+++ E
Sbjct: 615 KKQLD-DQYE---------AKSIKQHVQKKKYDTIHAGDEVKVLSYGQKGEVLEL-VGNE 663
Query: 824 EIVVQVGNMKWIMKFTDI 841
E VVQ+G +K + D+
Sbjct: 664 EAVVQMGIIKMKLPIEDL 681
>gi|418637528|ref|ZP_13199847.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus lugdunensis VCU139]
gi|374838774|gb|EHS02309.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus lugdunensis VCU139]
Length = 783
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 226/803 (28%), Positives = 369/803 (45%), Gaps = 137/803 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATL---------TQLWSINQTYQDSLRLLDETNA 102
++L VLE++K+ +++ + LGRE L T ++ +N+T DE +
Sbjct: 4 KTLDVLEFNKIKALIANETISDLGREKVLQLHPATDYDTVVFQMNET--------DEISQ 55
Query: 103 AIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAA 162
+ S S LS V + + S L E + L+Q + +
Sbjct: 56 IYNKYRMPSLS------GLSKVSPLLHRAKIGSVLNVTELNQLKRLIQVQNQFK-TFYNQ 108
Query: 163 IKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLE 222
+ ED + + + L +M+L V L + I D + D AS L+ R ++
Sbjct: 109 LLEDDEQQVYYPLLHDNMMRLPVLTDLFQEINDKCDTH-DLYDHASYELQGIRSKISSTT 167
Query: 223 RKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVI 278
+++ Q +D +++N++N+ + V+ + R I A+ + FKG++ S+SG I
Sbjct: 168 QRIRQNLDRIVKNQSNQKKLSDAIVTVRNERNVIPVKAEYRQDFKGIVHDQSASGQTLYI 227
Query: 279 EPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATY 338
EP S V +N+++ + R E +L LT + ++ + LD + A+A Y
Sbjct: 228 EPSSIVEMNNQVSRLRNDEAVERERILTILTTMVAQQAEQCLVAEEVMGHLDFLTAKARY 287
Query: 339 SLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQA 398
+ + GT P + TIYLP A+HPLL
Sbjct: 288 ASAIKGTKPTFY----------------------EARTIYLPNAFHPLL----------- 314
Query: 399 WKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVL 458
K+ ANT +E A V +
Sbjct: 315 DKETVVANT-------------------------------IEFADDV----------ETV 333
Query: 459 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 518
+ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F VF DIGDEQS+ QSLST
Sbjct: 334 IITGPNTGGKTVTLKTLGLIIIMAQSGLLIPTLDGSQLSVFHDVFCDIGDEQSIEQSLST 393
Query: 519 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578
FS H+K I I+ Q+ SL+L DE+GAGT+P EG AL MS+L+ G+L+ +ATTH+
Sbjct: 394 FSSHMKNIVAILQQADKHSLILFDELGAGTDPSEGAALAMSILDYTRALGALV-MATTHY 452
Query: 579 GELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 453 PELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLNLSIINKAKT 512
Query: 639 LYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRF 698
+ G EIN +I +E+ + E H L ++ H +L + ++ Q +
Sbjct: 513 MIGTDEQEINLMIESLEKNAKRVDTQRIELDHLLKEAQQTHDDLEK------QYNQFQAY 566
Query: 699 RKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQH 758
K Q I DA A Q +A++ + K + LR + ++ +
Sbjct: 567 EK-QLIEDAK--------DKANQRVKAATKEADEILKELRTLRDQKGADVKEHELIDKKK 617
Query: 759 VLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKV 818
L + ++ K IKQ + ++ + GD V V S+G+KG V+++
Sbjct: 618 QLDNQYE-----------------AKSIKQQVQKQKYDKIVAGDEVKVLSYGQKGEVLEL 660
Query: 819 EPSKEEIVVQVGNMKWIMKFTDI 841
+E VVQ+G +K + D+
Sbjct: 661 -VGNDEAVVQMGIIKMKLPIEDL 682
>gi|315658547|ref|ZP_07911419.1| DNA mismatch repair protein MutS [Staphylococcus lugdunensis
M23590]
gi|315496876|gb|EFU85199.1| DNA mismatch repair protein MutS [Staphylococcus lugdunensis
M23590]
Length = 783
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 226/803 (28%), Positives = 369/803 (45%), Gaps = 137/803 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATL---------TQLWSINQTYQDSLRLLDETNA 102
++L VLE++K+ +++ + LGRE L T ++ +N+T DE +
Sbjct: 4 KTLDVLEFNKIKALIANETISDLGREKVLQLHPATDYDTVVFQMNET--------DEISQ 55
Query: 103 AIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAA 162
+ S S LS V + + S L E + L+Q + +
Sbjct: 56 IYNKYRMPSLS------GLSKVSPLLHRAKIGSVLNVTELNQLKRLIQVQNQFK-TFYNQ 108
Query: 163 IKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLE 222
+ ED + + + L +M+L V L + I D + D AS L+ R ++
Sbjct: 109 LLEDDEQQVYYPLLHDNMMRLPVLTDLFQEINDKCDTH-DLYDHASYELQGIRSKISSTT 167
Query: 223 RKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVI 278
+++ Q +D +++N++N+ + V+ + R I A+ + FKG++ S+SG I
Sbjct: 168 QRIRQNLDRIVKNQSNQKKLSDAIVTVRNERNVIPVKAEYRQDFKGIVHDQSASGQTLYI 227
Query: 279 EPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATY 338
EP S V +N+++ + R E +L LT + ++ + LD + A+A Y
Sbjct: 228 EPSSIVEMNNQVSRLRNDEAVERERILTILTTMVAQQAEQCLVAEEVMGHLDFLTAKARY 287
Query: 339 SLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQA 398
+ + GT P + TIYLP A+HPLL
Sbjct: 288 ASAIKGTKPTFY----------------------EARTIYLPNAFHPLL----------- 314
Query: 399 WKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVL 458
K+ ANT +E A V +
Sbjct: 315 DKETVVANT-------------------------------IEFADDV----------ETV 333
Query: 459 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 518
+ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F VF DIGDEQS+ QSLST
Sbjct: 334 IITGPNTGGKTVTLKTLGLIIIMAQSGLLIPTLDGSQLSVFHDVFCDIGDEQSIEQSLST 393
Query: 519 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578
FS H+K I I+ Q+ SL+L DE+GAGT+P EG AL MS+L+ G+L+ +ATTH+
Sbjct: 394 FSSHMKNIVAILQQADKHSLILFDELGAGTDPSEGAALAMSILDYTRALGALV-MATTHY 452
Query: 579 GELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 453 PELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLNLSIINKAKT 512
Query: 639 LYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRF 698
+ G EIN +I +E+ + E H L ++ H +L + ++ Q +
Sbjct: 513 MIGTDEQEINLMIESLEKNAKRVDTQRIELDHLLKEAQQTHDDLEK------QYNQFQAY 566
Query: 699 RKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQH 758
K Q I DA A Q +A++ + K + LR + ++ +
Sbjct: 567 EK-QLIEDAK--------DKANQRVKAATKEADEILKELRTLRDQKGADVKEHELIDKKK 617
Query: 759 VLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKV 818
L + ++ K IKQ + ++ + GD V V S+G+KG V+++
Sbjct: 618 QLDNQYE-----------------AKSIKQQVQKQKYDKIVAGDEVKVLSYGQKGEVLEL 660
Query: 819 EPSKEEIVVQVGNMKWIMKFTDI 841
+E VVQ+G +K + D+
Sbjct: 661 -VGNDEAVVQMGIIKMKLPIEDL 682
>gi|289551051|ref|YP_003471955.1| recombination inhibitory protein MutS2 [Staphylococcus lugdunensis
HKU09-01]
gi|385784672|ref|YP_005760845.1| MutS family DNA mismatch repair protein [Staphylococcus lugdunensis
N920143]
gi|418414347|ref|ZP_12987562.1| MutS2 protein [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|289180583|gb|ADC87828.1| Recombination inhibitory protein MutS2 [Staphylococcus lugdunensis
HKU09-01]
gi|339894928|emb|CCB54231.1| MutS family DNA mismatch repair protein [Staphylococcus lugdunensis
N920143]
gi|410876954|gb|EKS24851.1| MutS2 protein [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 783
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 226/803 (28%), Positives = 369/803 (45%), Gaps = 137/803 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATL---------TQLWSINQTYQDSLRLLDETNA 102
++L VLE++K+ +++ + LGRE L T ++ +N+T DE +
Sbjct: 4 KTLDVLEFNKIKALIANETISDLGREKVLQLHPATDYDTVVFQMNET--------DEISQ 55
Query: 103 AIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAA 162
+ S S LS V + + S L E + L+Q + +
Sbjct: 56 IYNKYRMPSLS------GLSKVSPLLHRAKIGSVLNVTELNQLKRLIQVQNQFK-TFYNQ 108
Query: 163 IKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLE 222
+ ED + + + L +M+L V L + I D + D AS L+ R ++
Sbjct: 109 LLEDDEQQVYYPLLHDNMMRLPVLTDLFQEINDKCDTH-DLYDHASYELQGIRSKISSTT 167
Query: 223 RKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVI 278
+++ Q +D +++N++N+ + V+ + R I A+ + FKG++ S+SG I
Sbjct: 168 QRIRQNLDRIVKNQSNQKKLSDAIVTVRNERNVIPVKAEYRQDFKGIVHDQSASGQTLYI 227
Query: 279 EPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATY 338
EP S V +N+++ + R E +L LT + ++ + LD + A+A Y
Sbjct: 228 EPSSIVEMNNQVSRLRNDEAVERERILTILTTMVAQQAEQCLVAEEVMGHLDFLTAKARY 287
Query: 339 SLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQA 398
+ + GT P + TIYLP A+HPLL
Sbjct: 288 ASAIKGTKPTFY----------------------EARTIYLPNAFHPLL----------- 314
Query: 399 WKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVL 458
K+ ANT +E A V +
Sbjct: 315 DKETVVANT-------------------------------IEFADDV----------ETV 333
Query: 459 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 518
+ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F VF DIGDEQS+ QSLST
Sbjct: 334 IITGPNTGGKTVTLKTLGLIIIMAQSGLLIPTLDGSQLSVFHDVFCDIGDEQSIEQSLST 393
Query: 519 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578
FS H+K I I+ Q+ SL+L DE+GAGT+P EG AL MS+L+ G+L+ +ATTH+
Sbjct: 394 FSSHMKNIVAILQQADKHSLILFDELGAGTDPSEGAALAMSILDYTRALGALV-MATTHY 452
Query: 579 GELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 453 PELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLNLSIINKAKT 512
Query: 639 LYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRF 698
+ G EIN +I +E+ + E H L ++ H +L + ++ Q +
Sbjct: 513 MIGTDEQEINLMIESLEKNAKRVDTQRIELDHLLKEAQQTHDDLEK------QYNQFQAY 566
Query: 699 RKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQH 758
K Q I DA A Q +A++ + K + LR + ++ +
Sbjct: 567 EK-QLIEDAK--------DKANQRVKAATKEADEILKELRTLRDQKGADVKEHELIDKKK 617
Query: 759 VLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKV 818
L + ++ K IKQ + ++ + GD V V S+G+KG V+++
Sbjct: 618 QLDNQYE-----------------AKSIKQQVQKQKYDKIVAGDEVKVLSYGQKGEVLEL 660
Query: 819 EPSKEEIVVQVGNMKWIMKFTDI 841
+E VVQ+G +K + D+
Sbjct: 661 -VGNDEAVVQMGIIKMKLPIEDL 682
>gi|417645954|ref|ZP_12295839.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU144]
gi|329729966|gb|EGG66357.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU144]
Length = 782
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 226/798 (28%), Positives = 371/798 (46%), Gaps = 128/798 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM-QKHG 110
++L VLE++K+ V+ + LGRE Q + + ++ET+ ++ KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKV--QEMAPASNFDIVEFQMNETDEISQIYNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVGELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINEKCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEHRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGLVSAESDALLVAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + E TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEERTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T I ++ITGPNTG
Sbjct: 322 T-----------------------------------------IEFIDDVETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E + + E + ++ H L S+++++ Q
Sbjct: 520 INAMIESLEHNSKRVDQQRIELDRLVREAQETHDAL------------SKQYQQYQNYE- 566
Query: 707 AAAIARSLVHKS---AQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+SL+ ++ A Q SA++ + K + LR + +H L
Sbjct: 567 -----KSLMEEAKEKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDK 614
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+Q D+ E K IKQ + K+ + + GD V V S+G+KG V+++ E
Sbjct: 615 KKQLD-DQYE---------AKSIKQHVQKKKYDTIHAGDEVKVLSYGQKGEVLEL-VGNE 663
Query: 824 EIVVQVGNMKWIMKFTDI 841
E VVQ+G +K + D+
Sbjct: 664 EAVVQMGIIKMKLPIEDL 681
>gi|51892253|ref|YP_074944.1| DNA mismatch repair protein [Symbiobacterium thermophilum IAM
14863]
gi|81692142|sp|Q67QE3.1|MUTS2_SYMTH RecName: Full=MutS2 protein
gi|51855942|dbj|BAD40100.1| DNA mismatch repair protein [Symbiobacterium thermophilum IAM
14863]
Length = 793
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 228/802 (28%), Positives = 354/802 (44%), Gaps = 139/802 (17%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGRE-----ATLTQLWSINQTYQDSLRLLDETNAAIEMQ 107
+LR LE+ K+ ++ TSLGRE A T + ET+ A +
Sbjct: 5 TLRTLEFAKIKEMLAERTATSLGREVVESLAPATDFLEVQHRQA-------ETSEARRLY 57
Query: 108 KHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
+ G ++ L G L +++ ++ R L P + L V S L+ L +E
Sbjct: 58 E-GGHAIPLGG--LHDLRAHVQRAVRGGVLDPGDLLDVADTAASSRRLKRFL----EEQE 110
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
L I LT + L L I Q VDE G ++D ASPAL + R +++L+ ++ +
Sbjct: 111 GLPI----LTALSRMLGTFHHLEAEIRQAVDEHGEVRDDASPALAEIRRSMRILQNRMKE 166
Query: 228 LMDMLIRNENNESLFLEVSSI-HGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAV 284
+D +R + L + +I GR + + + G++ S+SG IEP++ V
Sbjct: 167 RLDAFVRGSAAKYLQDPIVTIREGRFVVPVKIEYRAQVPGIVHDQSASGSTLFIEPMAIV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
+N++L++ + E +L L+ + + D + L + Q+D +A+ SL
Sbjct: 227 EMNNDLRELALKEHEEVERILARLSSLVAGEADALLDTLQAVAQIDFASAKGKLSLDLDC 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
T P + RE + + K HPLL
Sbjct: 287 TEPELV----------------------REPILEIHKGRHPLL----------------- 307
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
KG + P ++ + + D + ITGPN
Sbjct: 308 -----------------KG----RVVPIDVHIG-------ITFDTLV--------ITGPN 331
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKT+GL V+MA++GLH+ + +V F VF DIGDEQS+ QSLSTFSGH+
Sbjct: 332 TGGKTVALKTMGLFVLMAQAGLHLPAGHGTRVGVFQQVFVDIGDEQSIEQSLSTFSGHMT 391
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I I+ +LVLLDE+GAGT+P EG AL MS+LE + G+ T+ATTH+ ELKT
Sbjct: 392 NIIRILDALEGPALVLLDELGAGTDPTEGAALAMSILEHLHKRGA-KTVATTHYSELKTY 450
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
Y+ ENA +EFD L+PT+++L GVPG S+A I+ RLGL +V ARQ
Sbjct: 451 AYTRSRVENASVEFDVETLRPTFRLLIGVPGSSNAFEISRRLGLSPHIVDRARQF----- 505
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRK--VQ 702
+ E ER + ++ +H R L R L +QR R+ +
Sbjct: 506 -----LTQEQERVE-DLIQGIHATRAELEKERAEAHRL---------RAEAQRMREEYER 550
Query: 703 KISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTS 762
+ DA A V K+ Q A Q + + A+ + Q+L + + + S
Sbjct: 551 RYGDAQRKAAETVEKARAQ----AQQILATARREAEAVIAELKQALREQREAERMQAIQS 606
Query: 763 NFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP---NVGDLVHVSSFGKKGTVIKVE 819
+ A A +V ++ +R E+P GD V V S G V+
Sbjct: 607 ARSRL--------ARARQAVEPTEEEQRARRRGEVPRGLKPGDKVRVVSLDTTGYVLSEP 658
Query: 820 PSKEEIVVQVGNMKWIMKFTDI 841
+ ++VQ G +K + TD+
Sbjct: 659 DADGNVLVQAGILKMTVSLTDL 680
>gi|339635048|ref|YP_004726689.1| MutS2 family protein [Weissella koreensis KACC 15510]
gi|338854844|gb|AEJ24010.1| MutS2 family protein [Weissella koreensis KACC 15510]
Length = 798
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 205/670 (30%), Positives = 318/670 (47%), Gaps = 114/670 (17%)
Query: 181 MQLFVNR-----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRN 235
+Q +V+R + + + Q +D+DG I D ASP LK+ R + E + Q M R
Sbjct: 120 LQSYVDRLITLPEVTRQLNQSIDQDGRITDEASPELKRVRQLILGTENGIRQKMQEYTRG 179
Query: 236 ENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLNDELQQ 292
+ + L + +I + R + A+ + G ++ S G IEP V LN+ L++
Sbjct: 180 KMAKYLSDPIVTIRNDRYVVPVRAENRNKFGGVVHDQSQTGQTLYIEPAPVVDLNNRLKE 239
Query: 293 ARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLP 352
A+ E VL L+ +Q DEI + + LD VNA+A Y++ P
Sbjct: 240 AQLKERAEEAQVLHDLSAALQPYQDEILENAKVLGHLDFVNAKALYAIDLKAVQPE---- 295
Query: 353 QDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRR 412
+ P E I L +A HPLL Q+
Sbjct: 296 --------YSP----------EQHIRLLQARHPLLDQK---------------------- 315
Query: 413 KLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICL 472
V DI + +++TGPNTGGKTI L
Sbjct: 316 ------------------------------QAVANDIILGEDYTAIIVTGPNTGGKTITL 345
Query: 473 KTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ 532
KT+GL +MA+SGL I + EY+ V FD++FADIGDEQS+ QSLSTFS H+ I +I+ +
Sbjct: 346 KTLGLLQIMAQSGLFIPADEYSTVGIFDNIFADIGDEQSIEQSLSTFSSHMVNIVDILDK 405
Query: 533 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 592
T SLVL DE+GAGT+P EG AL M++L+A G+ T+ATTH+ ELK Y+
Sbjct: 406 MTPNSLVLFDELGAGTDPQEGAALAMAILDAVGAIGA-YTVATTHYPELKVYGYNRVDTI 464
Query: 593 NACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVII 652
NA MEFD L+PTY+ + G+PGRS+A+ I++RLGL ++ A QL S E+N++I
Sbjct: 465 NASMEFDVETLRPTYRFMIGIPGRSNALEISKRLGLSENIIDQASQLTSDDSQELNDMIQ 524
Query: 653 EMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIAR 712
++ + + E L L+R L + KI A+ K QK A
Sbjct: 525 DLVDKRNLVTKQKIELEQQLQLNRVKTNQLDQATEKIAVEQATM-LEKAQK------EAN 577
Query: 713 SLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKV 772
+V +S Q+ A + +H+ +Q V +NQ + ++ +
Sbjct: 578 HIVAESRQK----ADRIIDDLHRLQRQ----------GGNVKENQIIDAKG----ALNAL 619
Query: 773 EHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVI-KVEPSKEEIVVQVGN 831
TA ++ + ++++ K+ + VGD V V +G++GT++ K++ K E VQ+G
Sbjct: 620 RQEPTAENNRI--LRRAKAKKQVNI-EVGDTVLVPEYGQQGTILRKLKDGKYE--VQIGI 674
Query: 832 MKWIMKFTDI 841
+K ++ +I
Sbjct: 675 LKMVLPGAEI 684
>gi|418616514|ref|ZP_13179438.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU120]
gi|420182831|ref|ZP_14688964.1| MutS2 family protein [Staphylococcus epidermidis NIHLM049]
gi|420214358|ref|ZP_14719637.1| MutS2 family protein [Staphylococcus epidermidis NIH05005]
gi|420217164|ref|ZP_14722348.1| MutS2 family protein [Staphylococcus epidermidis NIH05001]
gi|374820592|gb|EHR84668.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU120]
gi|394249294|gb|EJD94507.1| MutS2 family protein [Staphylococcus epidermidis NIHLM049]
gi|394283723|gb|EJE27888.1| MutS2 family protein [Staphylococcus epidermidis NIH05005]
gi|394290520|gb|EJE34375.1| MutS2 family protein [Staphylococcus epidermidis NIH05001]
Length = 782
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 226/798 (28%), Positives = 369/798 (46%), Gaps = 128/798 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVGELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINEKCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGLVSAESDALLVAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEDRTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T I ++ITGPNTG
Sbjct: 322 T-----------------------------------------IEFIDDVETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E + + E + ++ H L S+++++ Q
Sbjct: 520 INAMIESLEHNSKRVDQQRIELDRLVREAQETHDAL------------SKQYQQYQNYE- 566
Query: 707 AAAIARSLVHKS---AQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+SL+ ++ A Q SA++ + K + LR + +H L
Sbjct: 567 -----KSLMEEAKEKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDK 614
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+Q D+ E K IKQ + K+ + + GD V V S+G+KG V+++ E
Sbjct: 615 KKQLD-DQYE---------AKSIKQHVQKKKYDTIHAGDEVKVLSYGQKGEVLEL-VGNE 663
Query: 824 EIVVQVGNMKWIMKFTDI 841
E VVQ+G +K + D+
Sbjct: 664 EAVVQMGIIKMKLPIEDL 681
>gi|420194100|ref|ZP_14699929.1| MutS2 family protein [Staphylococcus epidermidis NIHLM021]
gi|394266798|gb|EJE11423.1| MutS2 family protein [Staphylococcus epidermidis NIHLM021]
Length = 782
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 227/798 (28%), Positives = 369/798 (46%), Gaps = 128/798 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVGELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINEKCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGLVSAESDALLVAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + E TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEERTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T I ++ITGPNTG
Sbjct: 322 T-----------------------------------------IEFIDDVETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRCLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E + + E + ++ H L S+++++ Q
Sbjct: 520 INAMIESLEHNSKRVDQQRIELDRLVREAQETHDAL------------SKQYQQYQNYE- 566
Query: 707 AAAIARSLVHKS---AQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+SL+ ++ A Q SA++ + K + LR + +H L
Sbjct: 567 -----KSLMEEAKEKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDK 614
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+Q D+ E K IKQ + K+ + + GD V V S+G+KG V+++ E
Sbjct: 615 KKQLD-DQYE---------AKSIKQHVQKKKYDTIHAGDEVKVLSYGQKGEVLEL-VGNE 663
Query: 824 EIVVQVGNMKWIMKFTDI 841
E VVQ+G +K + D+
Sbjct: 664 EAVVQMGIIKMKLPIEDL 681
>gi|365853718|ref|ZP_09393983.1| MutS2 family protein [Lactobacillus parafarraginis F0439]
gi|363711876|gb|EHL95582.1| MutS2 family protein [Lactobacillus parafarraginis F0439]
Length = 788
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 213/793 (26%), Positives = 361/793 (45%), Gaps = 162/793 (20%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGRE-----------ATLTQLWSINQTYQDSLRLLDE--- 99
L LE++K+ ++ F T G E A + Q D +RL E
Sbjct: 6 LDTLEYNKIKDQLAGFLTTDRGHEIVQNLQPSGDYAVVDQQLKETADGADIVRLAGEIPI 65
Query: 100 ---TNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQ 156
T + M++ + L+G +L+ + +R V+ S QF E +
Sbjct: 66 PKLTEISPYMKRLKIENAALSGTELAHITKLLRAVKTVS--------------QFFEDFK 111
Query: 157 LSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRG 216
+ ++ +R +P T + +L + + ++Q +D+DG + DSAS L+ R
Sbjct: 112 ---------NEEVTLRTVPKT--VAKLTLMPDITTRMVQSIDDDGRVLDSASSQLRAIRR 160
Query: 217 QVQMLERKLYQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSG 273
++ + + M ++ ++ L + ++ R + A+ S F G++ S+SG
Sbjct: 161 TIEQTQSNIRTRMGKYLKGSESKYLSEPIITVRDERFVLPIRAEYKSHFGGIVHDQSASG 220
Query: 274 IGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVN 333
+EP + V +N++L++ + + + +L LTE ++ E+ + +N + QLD VN
Sbjct: 221 QTLYVEPSNVVEMNNQLRRDQLAERTEQRRILAELTEMIRPYRQELLENMNLVGQLDFVN 280
Query: 334 ARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQ 393
A+A Y+ G P K+S+ E + L A HPL+ ++
Sbjct: 281 AKAKYAHQSGAVLP-------------------KIST---ENVVNLRHARHPLIAKE--- 315
Query: 394 KTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIAR 453
+ P+++++ A
Sbjct: 316 ----------------------------------KVVPNDIKIGA--------------- 326
Query: 454 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 513
+ +++TGPNTGGKTI +KTVGL +M +SGL I + E +++ FD VFADIGD+QS+
Sbjct: 327 DYQTIIVTGPNTGGKTITIKTVGLLQLMGQSGLFITADEESQIGVFDDVFADIGDDQSIE 386
Query: 514 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 573
+LSTFS H+ I I+ Q T +SLVLLDE+GAGT+P EG AL M++++A SG + I
Sbjct: 387 ANLSTFSSHMDNIIAIMKQLTDKSLVLLDELGAGTDPKEGAALAMAIIDAIHRSGCEM-I 445
Query: 574 ATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVV 633
ATTH+ ELK Y+ NA MEFD L+PTY++L G+PG+S+A+NIA RLG+P +V
Sbjct: 446 ATTHYPELKAFAYNRPGIINASMEFDVETLRPTYRLLLGIPGQSNALNIASRLGMPEQIV 505
Query: 634 QNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR-------TR 686
Q A+ + + +IN +I E+ + + E L + LH +L + +
Sbjct: 506 QQAKSFTDSENQDINNMIAELTSQTKRAHDEADELATELSEATKLHADLQKRFDQYQNQK 565
Query: 687 RKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQ 746
++ EH Q V+K A + +H+ +Q+ + + L+ + + +
Sbjct: 566 DRLQEHAREQANEIVEKAKHNADKIIADLHRKQRQVGKTTVKENELIDAKGALNQLEVAP 625
Query: 747 SLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHV 806
SL KV K + K +H A GD V V
Sbjct: 626 SLKRNKVLKKE-------------KAKHNFKA----------------------GDEVLV 650
Query: 807 SSFGKKGTVIKVE 819
S+G++GT+I+ E
Sbjct: 651 KSYGQQGTLIRQE 663
>gi|389573810|ref|ZP_10163881.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. M 2-6]
gi|388426380|gb|EIL84194.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. M 2-6]
Length = 786
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 238/797 (29%), Positives = 372/797 (46%), Gaps = 130/797 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREAT-----LTQLWSINQTYQDSLRLLDETNAAIEMQK 108
L LE+ K+ V S+ ++LG+E LT + SI Q L ++E I ++
Sbjct: 7 LASLEFHKVKEKVMSYTASTLGKEKAQDLIPLTDIESI----QHLLEEVEEAQDVIRLK- 61
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
GS L+ ++ ++ S L P E + + ALL ++ ++ L ++ ED
Sbjct: 62 -GSAPFG----GLTDIRRGVKRAEIGSILSPAELMEIAALLYTTKNMKHFL-TSMYEDGV 115
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
R + ++ L R K I + ++G + D A+PAL+ R Q++ LE K+
Sbjct: 116 EIPRLHTYAESLILLPDVR---KEIESCIGDNGEVLDHATPALRTIRTQLRSLESKVRDK 172
Query: 229 MDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAV 284
++ +IR+++ + + V+ + R I + S G ++ SSSG IEP V
Sbjct: 173 LESMIRSQSASKMLSDTIVTIRNDRFVIPVKQEYRSNYGGIVHDQSSSGATLFIEPQVVV 232
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+ LQQ R + E +L LT + +DE+ +N + LD + A+A Y+ +
Sbjct: 233 DLNNTLQQTRLKEKQEIEKILQMLTASVSEHIDELLHNVNELQTLDFIFAKAKYAKAEKA 292
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
T P + + IYL +A HPLL + Q D+E
Sbjct: 293 TKPTV----------------------NNQGEIYLKRARHPLL-----PRDQVVANDIE- 324
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
+ + +VITGPN
Sbjct: 325 ----------------------------------------------LGKDFSTIVITGPN 338
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKT+GL +M ++GLHI E ++V FD VFADIGDEQS+ QSLSTFS H+
Sbjct: 339 TGGKTVTLKTLGLLTLMTQAGLHIPVEEGSEVAVFDQVFADIGDEQSIEQSLSTFSSHMV 398
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I +I+ TS SLVL DE+GAGT+P EG AL MS+L+ ++ + + IATTH+ ELK
Sbjct: 399 NIVDILKLLTSNSLVLFDELGAGTDPAEGAALAMSILDEVHQTNARV-IATTHYPELKAY 457
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
Y+ + NA +EFD L PTY++L GVPGRS+A I++RLGLP ++ A+ A
Sbjct: 458 GYNREGVTNASVEFDIETLSPTYRLLIGVPGRSNAFEISKRLGLPHHLIDRAKADMHAEH 517
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
E++++I +E K Q E +HE + + LHK L +++ILE +
Sbjct: 518 NEVDQMIASLEDSKKQAEEELHETEVYRKEAEKLHKEL---QKQILEWNEQK-------- 566
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
L+ ++ Q+ QA+ + Q+LR S+ +H L
Sbjct: 567 -------DKLLEEAEQKAAEKIEQAKKEAEEIIQELR-----SIKSEHRSFKEHEL---- 610
Query: 765 QQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEE 824
+D + A + K P K GD V V +FG+KGT+I+ + +E
Sbjct: 611 ----IDARKRLEEAVPEFDRKKKPEPVKKAARQLKPGDEVKVLTFGQKGTLIE-QTGNKE 665
Query: 825 IVVQVGNMKWIMKFTDI 841
VQ+G +K +K D+
Sbjct: 666 WSVQMGILKMKVKEKDM 682
>gi|366053748|ref|ZP_09451470.1| MutS2 family protein [Lactobacillus suebicus KCTC 3549]
Length = 790
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 224/799 (28%), Positives = 376/799 (47%), Gaps = 132/799 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGRE--ATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HG 110
L +E+D++ ++ + ++ G++ A+LT Y+ LL ET A++E+ + +G
Sbjct: 6 LETMEFDRIKDQIAPYLVSAAGKKELASLTPASD----YETVNELLGETTASVEILRLNG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
+ LS + ++ ++ + L E + +L+ S + + +++ D+
Sbjct: 62 GMPIP----QLSDISEQLKRLKIKATLNGTELAQIARVLRASASTKDFFEKLRQQEIDI- 116
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+ + +L S+ K ++ V++DG +KD AS L R ++ E + Q M+
Sbjct: 117 ---KAVEHYVDELVTIPSITKQLVSSVEDDGRLKDEASTKLHGLREKITQTEALIRQRME 173
Query: 231 MLIRNENNESLFLEVSSI---HGRLCIRTGADQLS-FKGLLLSSS-SGIGSVIEPLSAVP 285
R + ES +L S + + R + A+ + F G++ S SG+ IEP + +
Sbjct: 174 NYTRGK--ESKYLSDSIVTMRNDRYVLPVQANYRNHFGGVVHDQSQSGLTLFIEPQAVME 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKM---QVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
LN+ L++A+ E +L L+ + ++++ E +L LD +NA+A
Sbjct: 232 LNNRLREAQIDERHEERRILAELSSTLAPYRIEIAHNETILG---HLDFLNAKA------ 282
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
++ HE +K SE+ + L +A HPL+
Sbjct: 283 ---------------AIAHEMNATKPIVSEQNH-VNLKRARHPLI--------------- 311
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
P +M V DI I + ++ITG
Sbjct: 312 ---------------------------DPKKM----------VANDIEIGDAYKAIIITG 334
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKTI LKT+GL +M +SGL+I + E + + F +FADIGDEQSL Q+LSTFSGH
Sbjct: 335 PNTGGKTITLKTIGLIQLMGQSGLYIPTEEESSIGVFGDIFADIGDEQSLEQNLSTFSGH 394
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
++ + +I+ S+SLVLLDE+GAGT+P EG AL MS+L+A S + + TTH+ ELK
Sbjct: 395 MENVKSILDHIDSRSLVLLDELGAGTDPKEGAALAMSILDAIGVKNSYVMV-TTHYPELK 453
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642
Y D NA MEFD+ L+PTY++L G+PGRS+A IA+RLG+ ++ AR L
Sbjct: 454 VYGYDRDQTINASMEFDQETLQPTYRLLLGIPGRSNAFEIAQRLGISSEIISEARSLTDD 513
Query: 643 ASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQ 702
S ++N++I ++ + + EH E H + + +L L R+ L+ + R
Sbjct: 514 DSQDLNKMIGDLVEQRKKAHEHELELEHQVADATDLQTEL----RQKLDQFEANR----D 565
Query: 703 KISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTS 762
++ D A + Q +QAR + LR Q V +NQ L
Sbjct: 566 QMQDQARV----------QANHEVAQARQKADQIISHLRQLERQ--QGANVKENQ--LID 611
Query: 763 NFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSK 822
Q + P + V++ R KR VGD V V S+G+ G + + + K
Sbjct: 612 AKGQLNALHMNDPKLKKNKVLQ------REKRKHDLKVGDAVLVKSYGQYGELTR-KMGK 664
Query: 823 EEIVVQVGNMKWIMKFTDI 841
++ VQ+G +K + +D+
Sbjct: 665 DDWEVQLGILKMKVNESDL 683
>gi|153810971|ref|ZP_01963639.1| hypothetical protein RUMOBE_01362 [Ruminococcus obeum ATCC 29174]
gi|149832859|gb|EDM87942.1| MutS2 family protein [Ruminococcus obeum ATCC 29174]
Length = 793
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 226/810 (27%), Positives = 368/810 (45%), Gaps = 149/810 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLD--ETNAAIEMQKH 109
++L LE+ K+ ++ A + +G++ S T +++RL+ +A + +
Sbjct: 4 KALNALEYPKIIEKLTEKASSYMGKQLCKNLEPS---TDLETIRLMQVQTKDALTRLFQK 60
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
GS S ++ ++ +++ + S L E LAV LL+ + ++ R KE DL
Sbjct: 61 GSISFG----NVKDIRGSLKRLEIGSALSIQEILAVCGLLENTSRVKTYSR---KERNDL 113
Query: 170 YIRFMP---LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
P L M L L I + + + I D ASPAL+Q R +++ +++
Sbjct: 114 -----PGDSLDSMFDGLSPLTPLSTEIRRCILSEEEISDDASPALRQIRRNMKITNDRIH 168
Query: 227 QLMDMLIRNENNESLFLEVSSI---HGRLCIRTGADQLSFKGLLLS-----SSSGIGSVI 278
+ L+ + +L+ S I +GR CI A+ +KG + SS+G I
Sbjct: 169 TQLAGLVNG--SARTYLQDSVITMRNGRYCIPVKAE---YKGQVPGMIHDQSSTGSTLFI 223
Query: 279 EPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATY 338
EP+S V LN+++++ K E +L L++++ + + I L ++QLD + ARAT
Sbjct: 224 EPMSVVKLNNDMRELELQEQKEIEVILADLSQQIATEQEAISLNLELMVQLDFIFARATL 283
Query: 339 SLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQA 398
++ + P +F E I L KA HPL+ +K+K
Sbjct: 284 AMEMNASEP-VF---------------------NDEGRINLKKARHPLI---NKKKV--- 315
Query: 399 WKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVL 458
VPIDI + + +L
Sbjct: 316 ----------------------------------------------VPIDIRLGDEFDLL 329
Query: 459 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 518
VITGPNTGGKT+ LKTVGL +M +SGLHI + + +++ F V+ADIGDEQS+ QSLST
Sbjct: 330 VITGPNTGGKTVSLKTVGLLTLMGQSGLHIPTLDRSELALFHEVYADIGDEQSIEQSLST 389
Query: 519 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578
FS H+ I + + ++ SLVL DE+ +GT+P EG AL +S+L E G + T+ATTH+
Sbjct: 390 FSSHMTNIVSFLGKADRHSLVLFDELCSGTDPTEGAALAISILSYLHERG-IRTMATTHY 448
Query: 579 GELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
ELK S ENAC EF+ L PTY++L G+PG+S+A I+ +LG+P +++ AR+
Sbjct: 449 SELKVFALSASGIENACCEFNVETLSPTYRLLIGIPGKSNAFAISSKLGIPESIIEKARE 508
Query: 639 LYGAASAEINEVI-------IEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILE 691
+V+ I +E +T+ ++ E N + L + +I+
Sbjct: 509 QINEQDESFEDVLTSLEESRITIENERTEIAQYKLEIETLKKQLENKQEKLDVQKERIIR 568
Query: 692 HCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCT 751
+ + +Q D A L HK + +A+ R R Q+L + + T
Sbjct: 569 QANEEAHKVLQDAKDYADQTMKLFHKFHNEYVDTAAVERERQQLR-QRLNKAEQKMAQPT 627
Query: 752 KVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGK 811
K + VLT+ KDI ++GD V V S
Sbjct: 628 PKKKPKKVLTA---------------------KDI------------HLGDTVRVLSMNL 654
Query: 812 KGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
KGTV SK + VQ+G ++ + +D+
Sbjct: 655 KGTVSTRPDSKGYLFVQMGIIRSKVHISDL 684
>gi|420161043|ref|ZP_14667814.1| MutS family DNA mismatch repair protein [Weissella koreensis KCTC
3621]
gi|394745793|gb|EJF34611.1| MutS family DNA mismatch repair protein [Weissella koreensis KCTC
3621]
Length = 806
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 206/670 (30%), Positives = 315/670 (47%), Gaps = 114/670 (17%)
Query: 181 MQLFVNR-----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRN 235
+Q +V+R + + + Q +D+DG I D ASP LK+ R + E + Q M R
Sbjct: 128 LQSYVDRLITLPEVTRQLNQSIDQDGRITDEASPELKRVRQLILGTENGIRQKMQEYTRG 187
Query: 236 ENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLNDELQQ 292
+ + L + +I + R + A+ + G ++ S G IEP V LN+ L++
Sbjct: 188 KMAKYLSDPIVTIRNDRYVVPVRAENRNKFGGVVHDQSQTGQTLYIEPAPVVDLNNRLKE 247
Query: 293 ARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLP 352
A+ E VL L+ +Q DEI + + LD VNA+A Y++ P
Sbjct: 248 AQLKERAEEAQVLHDLSAALQPYQDEILENAKVLGHLDFVNAKALYAIDLKAVQPE---- 303
Query: 353 QDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRR 412
+ P E I L +A HPLL Q+
Sbjct: 304 --------YSP----------EQHIRLLQARHPLLDQK---------------------- 323
Query: 413 KLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICL 472
V DI + +++TGPNTGGKTI L
Sbjct: 324 ------------------------------QAVANDIILGEDYTAIIVTGPNTGGKTITL 353
Query: 473 KTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ 532
KT+GL +MA+SGL I + EY+ V FD++FADIGDEQS+ QSLSTFS H+ I +I+ +
Sbjct: 354 KTLGLLQIMAQSGLFIPADEYSTVGIFDNIFADIGDEQSIEQSLSTFSSHMVNIVDILDK 413
Query: 533 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 592
T SLVL DE+GAGT+P EG AL M++L+A G+ T+ATTH+ ELK Y+
Sbjct: 414 MTPNSLVLFDELGAGTDPQEGAALAMAILDAVGAIGA-YTVATTHYPELKVYGYNRVDTI 472
Query: 593 NACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVII 652
NA MEFD L+PTY+ + G+PGRS+A+ I++RLGL ++ A QL S E+N++I
Sbjct: 473 NASMEFDVETLRPTYRFMIGIPGRSNALEISKRLGLSENIIDQASQLTSDDSQELNDMIQ 532
Query: 653 EMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIAR 712
++ + + E L L+R L + KI A+ K QK A
Sbjct: 533 DLVDKRNLVTKQKIELEQQLQLNRVKTNQLDQATEKIAVEQATM-LEKAQK------EAN 585
Query: 713 SLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKV 772
+V +S Q+ A + +H+ +Q V +NQ + ++ +
Sbjct: 586 HIVAESRQK----ADRIIDDLHRLQRQ----------GGNVKENQIIDAKG----ALNAL 627
Query: 773 EHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVI-KVEPSKEEIVVQVGN 831
TA ++ I + + K+ VGD V V +G++GT++ K++ K E VQ+G
Sbjct: 628 RQEPTAENN---RILRRAKAKKQVNIEVGDTVLVPEYGQQGTILRKLKDGKYE--VQIGI 682
Query: 832 MKWIMKFTDI 841
+K ++ +I
Sbjct: 683 LKMVLPGAEI 692
>gi|334118052|ref|ZP_08492142.1| MutS2 protein [Microcoleus vaginatus FGP-2]
gi|333460037|gb|EGK88647.1| MutS2 protein [Microcoleus vaginatus FGP-2]
Length = 909
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 152/461 (32%), Positives = 232/461 (50%), Gaps = 107/461 (23%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+D+ I RV+ ITGPNTGGKT+ LKT+GLA +MAK+G+ + + E ++PWFD++ A
Sbjct: 367 VPVDLTIGPHIRVVAITGPNTGGKTVTLKTLGLAALMAKAGMFVAAREPVELPWFDNILA 426
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNII-------------------------------SQS 533
DIGDEQSL QSLSTFSGH+++I I+ +Q+
Sbjct: 427 DIGDEQSLQQSLSTFSGHIRRISRILEVLGNKSQAEGEETSNLPITNSQQQDQEVTDTQN 486
Query: 534 TSQSLVLL---------------------------DEIGAGTNPLEGTALGMSLLEAFAE 566
T +L +L DE+GAGT+P EG+AL ++LL+ A+
Sbjct: 487 TVSALPILKPKLQIPKAQSPISNSQLAIPKSLVLLDEVGAGTDPSEGSALAIALLQYLAQ 546
Query: 567 SGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERL 626
SLLT+ATTH GELK LKY + FENA +EFD+ ++PTY++LWG+PGRS+A+ IA+RL
Sbjct: 547 H-SLLTVATTHFGELKALKYQDSRFENASVEFDDNSMQPTYRLLWGIPGRSNALTIAKRL 605
Query: 627 GLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTR 686
GL +V+ A+ G AS ++N+VI +E + + EA L + LH+ + +
Sbjct: 606 GLLASIVEEAQTYVGGASQDVNQVIAGLEAQRRKQETKAREATQLLHQTEKLHREVSQKA 665
Query: 687 RKILEHCASQRFRKVQKISDAAAIARSLVH------KSAQQLCPSASQARSLVHKRAQQL 740
+ E + + +++A A+S + +S Q +A QA +++ +++
Sbjct: 666 AALQERERELKIAQEVAVNEAIGSAKSEIAQIIRRLQSGNQTAQNAQQATDTLNQISEKH 725
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
PS Q PA S +P V
Sbjct: 726 LPSRQQ----------------------------PAKPKPSF--------------MPKV 743
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD + + S G+ V+ + EE+ V+ G MK +K +I
Sbjct: 744 GDRIRIPSLGQTAEVLSGPDANEELSVRFGIMKMTVKLGEI 784
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 142/301 (47%), Gaps = 14/301 (4%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L +LEW +LC +++FA T LG A L I T + LL +T+ A +++
Sbjct: 14 ETLELLEWPRLCQHLATFAATKLGVAAALD--LPIPATQAQTAELLAQTHEAYQLESRAG 71
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+L G+ + ++++ L E LA+ L + LR I AD+
Sbjct: 72 GALSFEGIQD--IGTSLQRAELQGLLSGEELLAIATTLAGAR----QLRRIIDSQADVPT 125
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L ++ QL L + I + +D+ + D A+P L R Q++ L ++YQ++
Sbjct: 126 ----LKELAAQLRTYPELEQEIHRCIDDRAQVADRATPKLAGIRVQMRQLRDRIYQILQG 181
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
+++ ++N ++ GR I A Q + G++ SS+SG +EP S V LN++
Sbjct: 182 ILQRQSNAVQEQLITQRSGRFVIPVKAPQKDAIPGIVHDSSASGATLYVEPHSTVNLNNQ 241
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
++Q EE V ALTE++ ++++++ + LD+ A+A YS P
Sbjct: 242 MRQFLRQEQAEEEAVRRALTEQVAAVKPDLDRLVVVVTTLDLAAAKARYSFWLQANPPKF 301
Query: 350 F 350
Sbjct: 302 I 302
>gi|255083879|ref|XP_002508514.1| predicted protein [Micromonas sp. RCC299]
gi|226523791|gb|ACO69772.1| predicted protein [Micromonas sp. RCC299]
Length = 1064
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 156/409 (38%), Positives = 213/409 (52%), Gaps = 36/409 (8%)
Query: 444 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 503
P P+D+F+ R +VITGPNTGGKT +K VGLA +MA+SGL + +E A++PWFDSV
Sbjct: 513 PAPVDVFVPLNARCVVITGPNTGGKTAAMKAVGLASLMARSGLFV-PAEMARLPWFDSVL 571
Query: 504 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 563
DIGD Q L QSLSTFS L + I+S + SLVL+DE+G GT+P EG A+G +LLE
Sbjct: 572 VDIGDSQDLMQSLSTFSARLAKQRAILSAAGPDSLVLMDEVGTGTSPAEGAAIGGALLER 631
Query: 564 FAESG--------SLLTIATTHHGELKTLKY--SNDFFENACMEFDEVKLKPTYKILWGV 613
A G + LT+ATTHHGELK LKY +FENA +EFDE L PTY++LWGV
Sbjct: 632 LAGVGAGGTDFNRAGLTLATTHHGELKALKYEHPGGYFENAAVEFDEAALAPTYRLLWGV 691
Query: 614 PGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLM 673
PGRS A+ IAER GL VV +AR G A + E I +E + E + A L
Sbjct: 692 PGRSRALQIAERFGLEPAVVDDARAALGEGRATLEETIGALESARRGADEDIKRALSLLW 751
Query: 674 LSRNLHKNLLRTRRKI-LEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSL 732
N+ RT +I + + A+ IAR+ + +L A +A+
Sbjct: 752 -------NVDRTAPRIAAAQARVDAAEEAADVKLASGIARAGRERK-TRLAADARRAQVE 803
Query: 733 VHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRV 792
V + + ++ + T + + K+ PA +V
Sbjct: 804 VAREKRGAALASGATDFATAAAAARAAEAEAERAAAAAKLRPPA--------------KV 849
Query: 793 KRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
P+VGD V V + G +G V KV S + VQ G M+ + D+
Sbjct: 850 PSGWCPDVGDPVVVLTTGMQGKVRKVAGSA--VTVQAGLMQLKVDVADV 896
Score = 86.7 bits (213), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 13/302 (4%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
+SL W +L ++ +A T LG+EA +Q + LLDET AA+ M+ H
Sbjct: 61 QSLEACGWGELLEDLAEYASTRLGQEAVRVMQPPEGGAWQSEM-LLDETEAAMVMENHLG 119
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
S+D G+ + V+ A+ + + + L +E A+VA + + L+ ++ + +
Sbjct: 120 ASIDFGGIMSAEVRRALYKAEKYASLGGDELAAMVAFIASAARLKKTVE-NVAVNGVPPP 178
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
PL ++ + + +I Q VD+ G KD ASP L+++R Q E KL + +
Sbjct: 179 ELAPLRNIVAAMAPRPEVADAIKQCVDDQGGFKDGASPELRRARSQRAAAEAKLRRAL-- 236
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV-IEPLSAVPLNDEL 290
+N N +V++ GR+ + L++ ++G G V IEP V LN +L
Sbjct: 237 --QNANG-----QVTTHQGRVVLAV-TPPAPAGALVVGVAAGGGLVLIEPPGVVLLNGQL 288
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIF 350
Q AS A + + LT + ++ L+ + +LDV+ ARA + + P
Sbjct: 289 AQCVASEESAIDAIRRRLTNTVAAATPDLFVALDVVTRLDVIAARARQASAMNACRPTFV 348
Query: 351 LP 352
+P
Sbjct: 349 IP 350
>gi|163791552|ref|ZP_02185956.1| MutS2 family protein [Carnobacterium sp. AT7]
gi|159873188|gb|EDP67288.1| MutS2 family protein [Carnobacterium sp. AT7]
Length = 788
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 223/797 (27%), Positives = 377/797 (47%), Gaps = 128/797 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
+ LE++K+ ++++ A + LG+E L SIN+ + + DET + G+
Sbjct: 6 FQTLEFNKIIQAIANLAASDLGKEQVLMLAPSINKEEVEVWQ--DET-------EDGTKI 56
Query: 114 LDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
L L G L V+ ++ + + L E + +L+ + + +KE
Sbjct: 57 LKLRGRMPIPKLQNVRPHLKRLDIGASLNGLEIAQIGKILRTTSEIN-RFFENLKESGIE 115
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
R LT+ + +L + I + VDEDG + + ASPALK R ++ E + + +
Sbjct: 116 MNRLYELTE---KFITTPALNQLIRETVDEDGRVMNDASPALKGIRTGIKRGETNVREKL 172
Query: 230 DMLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPL 286
D ++R ++ + L + +I + R I + S G ++ S G +EP S V L
Sbjct: 173 DGIVRGKSAQYLSDTIITIRNDRYVIPVKQEYRSHFGGVVHDQSSTGQTLFVEPQSVVEL 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L+Q + + + +L ++ ++ +I + + +LD + A+A+Y+ +
Sbjct: 233 NNRLRQLQIEERREIDRILAEISNEIAPYSKDILNNMYLLGKLDFIGAKASYAKNI---- 288
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
D R + H+ E + L A HPLL D ES
Sbjct: 289 -------DANRPMIHD-----------ENEVKLLSARHPLL-------------DPESV- 316
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
V DI I + + ++ITGPNTG
Sbjct: 317 --------------------------------------VANDILIGGENQAVIITGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+GL +M +SGL + + +++ F +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 339 GKTIILKTLGLLQLMGQSGLQLPVAPDSQMGLFTEIFADIGDEQSIEQSLSTFSSHMTNI 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
+I+ + ++SL++ DE+GAGT+P EG AL +++L+ GS + + T+H+ ELK Y
Sbjct: 399 VSILDRIDNKSLIIFDELGAGTDPQEGAALAIAILDRVGAVGSYVMV-TSHYPELKAYGY 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA MEFD L PTY++L GVPGRS+A I++RLGL V+ +ARQL S
Sbjct: 458 NRPQTINASMEFDIDTLSPTYRLLIGVPGRSNAFEISKRLGLSEEVIDSARQLIDGESQN 517
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRF--RKVQKI 704
+NE+I ++E + E RH++ + LH +L A Q+F + + +
Sbjct: 518 LNEMISDLENRRKMAETEYLEVRHYVDEAEQLHADL---------QTAVQQFYAEREELL 568
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
A A SLV ++ + +A+Q + K+ Q L + K ++ +
Sbjct: 569 KKAREKANSLVEETEE----TANQIIKDLRKK---------QILGQYEGVKEHELIDAKT 615
Query: 765 QQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEE 824
Q + + + E A + V+K + K ++ GD V V SFG+KG +++ + K
Sbjct: 616 QLSGLRQEE--ALEKNKVLK------KAKAKQVMKPGDDVIVQSFGQKGILME-KADKNH 666
Query: 825 IVVQVGNMKWIMKFTDI 841
VVQ+G +K +K +D+
Sbjct: 667 WVVQMGMLKMKLKESDL 683
>gi|376260578|ref|YP_005147298.1| MutS2 family protein [Clostridium sp. BNL1100]
gi|373944572|gb|AEY65493.1| MutS2 family protein [Clostridium sp. BNL1100]
Length = 792
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 213/796 (26%), Positives = 377/796 (47%), Gaps = 140/796 (17%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLR----LLDETNAAIE-MQKH 109
RVLE+ K+ + + LGRE L T Q LR +L ETN + + K
Sbjct: 7 RVLEFYKIIDKLKGLTASELGRELVL------ELTPQTDLRAVEKMLSETNDGVSCVLKR 60
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
GS L ++ ++ ++ + L P E L + +L+ + L+ + + E+
Sbjct: 61 GSPPLG----GITDIRMTLKRLDMGGVLSPGELLRLAGVLRAARRLKGYINDKLDEN--- 113
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ + ++I L N+ L + I + + I D+ASPAL R Q++ + + +
Sbjct: 114 --KTNVVNELISCLESNQRLEQKIENCILSEDEIADNASPALSSIRRQIKEQQASIKDKL 171
Query: 230 DMLIRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLL-SSSSGIGSVIEPLSAVP 285
+ +IR+ + E V ++ G R I + + GL+ SS+SG IEP++ V
Sbjct: 172 NSIIRSTKYQKFIQESVVTMRGDRYVIPVKQEHKGDIPGLVHDSSASGATLFIEPMAVVE 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
N+ ++Q R + +L L++ + L ++ ++ + +LD + A+A
Sbjct: 232 ANNSIKQLRVKEQTEIDRILAELSQDASLILPQLNANMSIMARLDFIFAKA--------- 282
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
K ++ ++ + +++ + + I + K HPL
Sbjct: 283 ----------KLAVDYKCICPRINDTGK---IIIKKGRHPL------------------- 310
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
L P ++ +PID +I K L++TGPNT
Sbjct: 311 -----------------------LDPQKV----------IPIDFWIGEKFSSLIVTGPNT 337
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKTVGL +M +SGL + ++E ++ F+ ++ADIGDEQS+ QSLSTFS H+K
Sbjct: 338 GGKTVSLKTVGLFTLMVQSGLLVPANEGTEMSVFEKIYADIGDEQSIEQSLSTFSSHMKN 397
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I +I+S ++SL+LLDE+GAGT+P EG AL MS+LE+ + G+ T+ATTH+ ELK
Sbjct: 398 IVDILSGVNNKSLILLDELGAGTDPTEGAALAMSILESLHQMGA-TTLATTHYSELKVYA 456
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
S ENA EFD L+PTY++L GVPG+S+A I++RLGL +++ +++
Sbjct: 457 ISTTGVENASCEFDVETLRPTYRLLIGVPGKSNAFAISKRLGLTDDIIERSKEFLSQEDI 516
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKIS 705
++++ +E+ +++ + A + + L K+L +R++ A+Q+ +++K
Sbjct: 517 RFEDILLSIEKNRSEAEKEKMRAESYRQEAERLKKDLEDQKRRL----AAQKESELRK-- 570
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSL--------VHKRAQQLRPSASQSLHCTKVGKNQ 757
A AR ++ S Q S+ + L V ++ ++LR ++S++
Sbjct: 571 -AREEARRILTDSKHQADELVSEMKRLAKEQEEAEVRRQTEELRQRLNKSIN-------- 621
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
N + V+ + P K++K GD V + + +KGT++
Sbjct: 622 -----NLDDSLVESI-MPRQGLVKPPKNLKP------------GDTVLIVNLNQKGTILS 663
Query: 818 VEPSKEEIVVQVGNMK 833
+ E VQ G MK
Sbjct: 664 LPDKNGEAQVQAGIMK 679
>gi|328956937|ref|YP_004374323.1| recombination and DNA strand exchange inhibitor protein
[Carnobacterium sp. 17-4]
gi|328673261|gb|AEB29307.1| recombination and DNA strand exchange inhibitor protein
[Carnobacterium sp. 17-4]
Length = 791
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 227/797 (28%), Positives = 372/797 (46%), Gaps = 128/797 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+ K+ +V++ A + LG+E LT SI++ + + DET + G+
Sbjct: 9 LQTLEFSKIIQAVANLAASDLGKEQALTLAPSIDKEEVELWQ--DET-------EDGTKI 59
Query: 114 LDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ L G L V+ ++ + + L E + +L+ + L +KE
Sbjct: 60 IKLRGRMPIPKLQNVRPHLKRLDIGASLNGLEIAQIGKILRTTTELN-RFFENLKESG-- 116
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I L + +L + I + VDEDG I D ASPALK R ++ E + + +
Sbjct: 117 -IEMNRLYDLADNFVTTPTLNQLIRETVDEDGHILDDASPALKGVRTGIKRGENNVREKL 175
Query: 230 DMLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPL 286
D ++R ++ + L + +I + R I + S G ++ S G +EP S V L
Sbjct: 176 DGIVRGKSAQYLSDAIITIRNDRYVIPVKQEYRSHFGGVVHDQSSTGQTLFVEPQSVVEL 235
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L+Q + + + +L ++ ++ +I + + +LD + A+A+Y+ +
Sbjct: 236 NNRLRQLQIEERREVDRILAEISNEIAPYSKDILNNMFLLGKLDFIGAKASYAKNVAANR 295
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P L HE E + L A HPLL
Sbjct: 296 P-----------LIHE-----------ENEVKLLSARHPLL----------------DPE 317
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T + L GG + + ++ITGPNTG
Sbjct: 318 TVVANDILIGG------------------------------------ENQAVIITGPNTG 341
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+GL +M ++GL I + +++ F +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 342 GKTIILKTLGLLQLMGQAGLQIPVAPESQIGLFTEIFADIGDEQSIEQSLSTFSSHMTNI 401
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
+I+ + ++SL++ DE+GAGT+P EG AL +++L+ GS + + T+H+ ELK Y
Sbjct: 402 VSILDRMDNKSLIIFDELGAGTDPQEGAALAIAILDKVGAVGSYVMV-TSHYPELKAYGY 460
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA MEFD L PTY++L GVPGRS+A I++RLGL V+ +ARQL S
Sbjct: 461 NRPQTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISKRLGLSEEVIDSARQLIDGESQN 520
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRF--RKVQKI 704
+NE+I ++E + E RH++ + LH +L A Q+F + + +
Sbjct: 521 LNEMISDLENRRKMAETEYLEVRHYVDEAEQLHTDL---------QTAVQQFYAEREELM 571
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
A A SLV ++ + +A Q + LR Q H V K ++ +
Sbjct: 572 KKAREKANSLVEETEE----TADQI-------IKDLRKKQIQG-HYENV-KEHELIDAKT 618
Query: 765 QQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEE 824
Q + + + E A A + V+K + K ++ GD V V SFG+KG +++ K
Sbjct: 619 QLSGLRQEE--ALAKNKVLK------KAKAKQVMKPGDDVMVQSFGQKGVLME-RADKNH 669
Query: 825 IVVQVGNMKWIMKFTDI 841
VVQ+G +K +K +D+
Sbjct: 670 WVVQMGMLKMKLKESDL 686
>gi|251810592|ref|ZP_04825065.1| MutS family DNA mismatch repair protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876408|ref|ZP_06285275.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis SK135]
gi|417913383|ref|ZP_12557050.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU109]
gi|418624906|ref|ZP_13187566.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU125]
gi|420172837|ref|ZP_14679335.1| MutS2 family protein [Staphylococcus epidermidis NIHLM067]
gi|420198524|ref|ZP_14704232.1| MutS2 family protein [Staphylococcus epidermidis NIHLM020]
gi|420226953|ref|ZP_14731726.1| MutS2 family protein [Staphylococcus epidermidis NIH05003]
gi|421607338|ref|ZP_16048584.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis AU12-03]
gi|251805752|gb|EES58409.1| MutS family DNA mismatch repair protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295433|gb|EFA87960.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis SK135]
gi|341655665|gb|EGS79389.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU109]
gi|374826171|gb|EHR90079.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU125]
gi|394241514|gb|EJD86928.1| MutS2 family protein [Staphylococcus epidermidis NIHLM067]
gi|394264219|gb|EJE08915.1| MutS2 family protein [Staphylococcus epidermidis NIHLM020]
gi|394297454|gb|EJE41051.1| MutS2 family protein [Staphylococcus epidermidis NIH05003]
gi|406657130|gb|EKC83523.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis AU12-03]
Length = 782
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 226/798 (28%), Positives = 371/798 (46%), Gaps = 128/798 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVGELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINEKCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGLVSAESDALLVAESVMGQIDFLIAKARYARTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + TIYLP A+HPLL KD AN
Sbjct: 295 PTF----------------------KEDRTIYLPNAFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T +E V ++ITGPNTG
Sbjct: 322 T-------------------------------IEFIDDV----------ETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E + + E + ++ H L S+++++ Q
Sbjct: 520 INAMIESLEHNSKRVDQQRIELDRLVREAQETHDAL------------SKQYQQYQNYE- 566
Query: 707 AAAIARSLVHKS---AQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+SL+ ++ A + SA++ + K + LR + +H L
Sbjct: 567 -----KSLMEEAKEKANKRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDK 614
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+Q D+ E K IKQ + K+ + + GD V V S+G+KG V+++ E
Sbjct: 615 KKQLD-DQYE---------AKSIKQHVQKKKYDTIHAGDEVKVLSYGQKGEVLEL-VGNE 663
Query: 824 EIVVQVGNMKWIMKFTDI 841
E VVQ+G +K + D+
Sbjct: 664 EAVVQMGIIKMKLPIEDL 681
>gi|169829506|ref|YP_001699664.1| MutS2 protein [Lysinibacillus sphaericus C3-41]
gi|168993994|gb|ACA41534.1| MutS2 protein [Lysinibacillus sphaericus C3-41]
Length = 788
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 232/807 (28%), Positives = 383/807 (47%), Gaps = 148/807 (18%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQT-YQDSLRLLDETNAAIEMQKHGS 111
+L+ LE+DK+ V+++ +S+G+ A + +L + QT Y ++LL+E + + + +
Sbjct: 6 ALKTLEYDKVRQQVATYCTSSIGKSA-IEEL--VPQTDYDKVVQLLEEMDEGLSILR--- 59
Query: 112 CSLDLTGVDLSLVKSAIREVR-RASPLRPNEALAVVALLQFSETLQLS--LRAAIKE-DA 167
V ++ I +VR A + LA + L++ S T++ S LR I++ +A
Sbjct: 60 -------VKGNVPMGGIFDVRPSARRAQIGGMLAAIELMEISSTIRASRILRNFIEDLEA 112
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
D I + V L I +D++G++ DSAS L+ R ++ E K+
Sbjct: 113 DEVIEIPHFIAKKETMPVLTGLQHEINNCIDDNGAVLDSASTTLRTIRQSLRSEEAKVRS 172
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSA 283
++ LIR N + + V+ + R I + G ++ SSSG IEP S
Sbjct: 173 KLESLIRGSNASKMLSDTLVTIRNDRFVIPVKQEYRHHYGGIVHDQSSSGQTLFIEPDSI 232
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQ---VDLDEIEKMLNGIIQLDVVNARATYSL 340
V N+E+ + + E +LLAL+ +Q DL + K+L I DV+ A+ Y
Sbjct: 233 VQANNEIHRLKMKEQAEVERILLALSAMVQDVAPDLFNLVKVLGDI---DVILAKGKYGQ 289
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
+ T P + ++ I L +A HPLL
Sbjct: 290 ANKCTMPKM----------------------NQDGYIRLVRARHPLL------------- 314
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
P ++ V P DI + +VI
Sbjct: 315 ------------------------------PIDIAV---------PNDIEFGKDITAIVI 335
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT+ LKTVGL +MA++GL + + + +++ F +FADIGDEQS+ QSLSTFS
Sbjct: 336 TGPNTGGKTVTLKTVGLCTLMAQAGLPVPALDGSQLAVFKQLFADIGDEQSIEQSLSTFS 395
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H+ I +I+ + +SLVL DE+GAGT+P EG AL +S+L+ G+ + +ATTH+ E
Sbjct: 396 SHMVNIVDILQKFDHESLVLFDELGAGTDPQEGAALAISILDEVHGRGARV-MATTHYPE 454
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK Y+ NA +EFD L PTY++L GVPGRS+A I+ RLGLP +++ A+
Sbjct: 455 LKAYGYNRPGVANASVEFDIETLSPTYRLLIGVPGRSNAFEISSRLGLPESIIERAKGFT 514
Query: 641 GAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL------LRTRRKILEHCA 694
G E+ +I +E + Q + + L+ S +L K L R++ L+ A
Sbjct: 515 GTDRHEVESMIASLEETRRQSEDDAERSHALLLESESLRKELQDKLQAYEERKEALDKKA 574
Query: 695 SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG 754
++ RK+ + +A A ++ + +++R +A Q V
Sbjct: 575 KEKARKI--VEEAKREAEGIIAE-------------------LREMRKNADQ------VV 607
Query: 755 KNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVK-RTELPNVGDLVHVSSFGKKG 813
K ++ + + +E+ K +K++ +VK R + VGD V V S+G++G
Sbjct: 608 KEHELIEARKRLEEATPLENN--------KVLKKAAQVKARAQNLVVGDEVKVLSYGQRG 659
Query: 814 TVIKVEPSKEEIVVQVGNMKWIMKFTD 840
T+++ + S E VVQ+G +K MK +D
Sbjct: 660 TLLE-KVSNTEWVVQMGILK--MKISD 683
>gi|417910746|ref|ZP_12554462.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU105]
gi|418622194|ref|ZP_13184950.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU123]
gi|420187633|ref|ZP_14693653.1| MutS2 family protein [Staphylococcus epidermidis NIHLM039]
gi|341654934|gb|EGS78670.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU105]
gi|374827569|gb|EHR91431.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU123]
gi|394256075|gb|EJE01011.1| MutS2 family protein [Staphylococcus epidermidis NIHLM039]
Length = 782
Score = 245 bits (626), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 225/798 (28%), Positives = 368/798 (46%), Gaps = 128/798 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE++K+ V+ + LGRE + N T + + DE + KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 62 LPSL--SG--LAKVSPLVHRASIGGVLNVGELNRIKRLVQVQNQFKTFYNQMLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILHDKMNHLPILTDLFKEINEKCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILTELTGLVSAESDALLVAESVMGQIDFLIAKARYAHTIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + TIYLP +HPLL KD AN
Sbjct: 295 PTF----------------------KEDRTIYLPNTFHPLL-----------DKDTVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T I ++ITGPNTG
Sbjct: 322 T-----------------------------------------IEFIDDVETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E + + E + ++ H L S+++++ Q
Sbjct: 520 INAMIESLEHNSKRVDQQRIELDRLVREAQETHDAL------------SKQYQQYQNYE- 566
Query: 707 AAAIARSLVHKS---AQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+SL+ ++ A Q SA++ + K + LR + +H L
Sbjct: 567 -----KSLMEEAKEKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDK 614
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+Q D+ E K IKQ + K+ + + GD V V S+G+KG V+++ E
Sbjct: 615 KKQLD-DQYE---------AKSIKQHVQKKKYDTIHAGDEVKVLSYGQKGEVLEL-VGNE 663
Query: 824 EIVVQVGNMKWIMKFTDI 841
E VVQ+G +K + D+
Sbjct: 664 EAVVQMGIIKMKLPIEDL 681
>gi|354806618|ref|ZP_09040099.1| mutS2 family protein [Lactobacillus curvatus CRL 705]
gi|354514802|gb|EHE86768.1| mutS2 family protein [Lactobacillus curvatus CRL 705]
Length = 787
Score = 245 bits (626), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 222/778 (28%), Positives = 365/778 (46%), Gaps = 138/778 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + A T+ G+E +TQL N RL D+T
Sbjct: 6 LQTLEYDKIKQMLQGHAITAFGQE-QITQLTPANDAELIQERL-DQTK------------ 51
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPN-EALAVVALLQFSETLQLS--LRAAIK------ 164
GVD+ +K I + + +RP+ + + + A L +E Q+ LRA
Sbjct: 52 ---DGVDIERLKGGI-PLPQLDNIRPHLKRIEIGATLNGTELAQVGRVLRATSAVVRFFD 107
Query: 165 --EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLE 222
E +L ++ +P ++ QL L + I V +DG++ D+AS L+ R ++ LE
Sbjct: 108 DLEKDELTLKALP--DLVAQLVTLPQLTEKIRSSVADDGAVLDTASTKLRGLRTSLKQLE 165
Query: 223 RKLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIE 279
++ M + L + +I + R I + + F G++ S+SG +E
Sbjct: 166 GQIRSRMASYTHGAKAKYLSDSIVTIRNDRYVIPVKQEYRGQFGGVVHDQSASGQTLFME 225
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
P + + LN+ L+Q + + E +L L+E + + I + QLD VNA+A +
Sbjct: 226 PQALMELNNRLRQLQIEEQQEIERILAELSEAIMPERHNILANAELLGQLDFVNAKAQLA 285
Query: 340 LSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAW 399
+ T P I L E + L +A HPL
Sbjct: 286 KALKATEPLINL----------------------ENHVELKQARHPL------------- 310
Query: 400 KDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLV 459
+ P+++ V DI I + +V
Sbjct: 311 -----------------------------IDPAKV----------VANDIAIGADYQAIV 331
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
+TGPNTGGKTI LKT+GL +MA+SGL I + E ++V F +FADIGDEQS+ Q+LSTF
Sbjct: 332 VTGPNTGGKTITLKTLGLVQVMAQSGLFITAREESQVGVFSDIFADIGDEQSIEQNLSTF 391
Query: 520 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579
S H++ I I+ +SLVLLDE+GAGT+P EG AL +++L+ G+ + +A+TH+
Sbjct: 392 SAHMENIIQILQHIDDRSLVLLDELGAGTDPQEGAALAIAILDQIGIVGADV-VASTHYP 450
Query: 580 ELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 639
ELK Y+ NA MEFD L+PTY++L GVPGRS+A +I+ RLGLP +VQ A+QL
Sbjct: 451 ELKIYGYNRPQTINASMEFDVATLQPTYRLLIGVPGRSNAFDISTRLGLPSSIVQQAKQL 510
Query: 640 YGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFR 699
S ++N +I ++E + RH L + +LH+ L ++ E ++ +
Sbjct: 511 MNDESQDLNNMITDLENQRKAAETEYQALRHELAEATDLHQQLSTAYQQFFEDRETEMTK 570
Query: 700 KVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHV 759
+K A ++V K+ + ++ R + + Q++ + ++ +
Sbjct: 571 AKEK-------ANAIVEKAEVKADKVITKLRDMQMNQGAQIKEN--------QLIDAKSE 615
Query: 760 LTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L Q+TT+ K + V++ R KR + GD V V+S+G++GT+++
Sbjct: 616 LGQLHQETTLKK--------NKVLQ------RAKRRQTLKEGDDVLVTSYGQRGTLVR 659
>gi|294501473|ref|YP_003565173.1| DNA mismatch repair protein MutS [Bacillus megaterium QM B1551]
gi|294351410|gb|ADE71739.1| DNA mismatch repair protein MutS [Bacillus megaterium QM B1551]
Length = 787
Score = 245 bits (626), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 231/793 (29%), Positives = 387/793 (48%), Gaps = 119/793 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
VLE++K+ + +SLGRE + S Y++ ++ + T+ A + + G+
Sbjct: 6 FHVLEFNKVKEQLQKKVASSLGREKVANLIPSTQ--YEEVVKWQEATDEATTVLRLRGNV 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
L + V+S+++ L NE L V + + + ++ + + ED DL +
Sbjct: 64 PLG----GIFDVRSSVKRAEIGGTLSSNELLDVASTIYAARQVKQFIEQVV-EDEDLQLP 118
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
+T+ I +L + ++I +DE+G++ D AS L+ R +++ E ++ + ++ L
Sbjct: 119 I--ITEHIEKLMPLPEVEQTIKMSIDENGTVLDGASDQLRGIRQKLRSTESRIREKLESL 176
Query: 233 IRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
IR+ + + + + V+ + R I + S G ++ SSSG IEP + V LN+
Sbjct: 177 IRSSSAQKMLSDAIVTIRNERFVIPVKQEYRSAYGGIVHDQSSSGATLFIEPQAIVTLNN 236
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
ELQ+A+ + E +L+ALT ++ +E+ + + + +LD + A+ YS
Sbjct: 237 ELQEAKVKEKQEIERILIALTVQVAEVANELRQNVYLLGELDFMFAKGRYS--------- 287
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
HE SK ++R + I L KA HPL+ Q +D+ + + E
Sbjct: 288 ------------HELKASKPKMNDRGY-IKLVKAKHPLIAQ----------EDVVANDIE 324
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
L G++ T++ VITGPNTGGK
Sbjct: 325 L-------------GDQYTSI-----------------------------VITGPNTGGK 342
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKT+GL +MA++GL I + + +++ F VFADIGDEQS+ QSLSTFS H+ I +
Sbjct: 343 TVTLKTLGLFTLMAQAGLQIPALDGSEMAVFKHVFADIGDEQSIEQSLSTFSSHMVNIVD 402
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I+ + +SLVL DE+GAGT+P EG AL +S+L+ E G+ + +ATTH+ ELK Y+
Sbjct: 403 ILQKVDHESLVLFDELGAGTDPQEGAALAISILDQVYERGARV-VATTHYPELKAYGYNR 461
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
+ NA +EFD L PTYK+L GVPGRS+A I++RLGL V++ A+ G+ + ++
Sbjct: 462 EGVVNASVEFDIETLSPTYKLLIGVPGRSNAFEISKRLGLSAEVIERAKGYIGSETNKVE 521
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+I +E + Q + EA ++ LHK L + +I+E K K+ + A
Sbjct: 522 NMIASLEDSRRQSEHELEEAEELRKEAQKLHKEL---QSQIIEFN-----EKRDKLYEKA 573
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ AQ +AS+ K LR + ++ K +H L +
Sbjct: 574 -------EEKAQATVKAASEE---AEKIISDLRKMSQKNYALVK----EHELIEARK--- 616
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
++E K + +RT GD V V S+G+KGT+++ S E VQ
Sbjct: 617 --RLEDAVPTLEKSKKKPAAPKKQERT--LQAGDEVKVLSWGQKGTLVE-RVSNNEWQVQ 671
Query: 829 VGNMKWIMKFTDI 841
+G MK +K D+
Sbjct: 672 MGIMKMKVKEKDL 684
>gi|383761505|ref|YP_005440487.1| MutS2 protein [Caldilinea aerophila DSM 14535 = NBRC 104270]
gi|381381773|dbj|BAL98589.1| MutS2 protein [Caldilinea aerophila DSM 14535 = NBRC 104270]
Length = 811
Score = 245 bits (625), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 220/791 (27%), Positives = 373/791 (47%), Gaps = 109/791 (13%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM--QKHG 110
+LRVLE+ K+ ++ + S G E + L S + T L +T A ++ QK
Sbjct: 5 TLRVLEYPKILERLAHYCAFSGGAELAASLLPSDDLTTVQEW--LAQTREAYQLLGQKD- 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
D++ +S ++ + R + L P + L + LQ + L+ +L I+
Sbjct: 62 ----DISFGGVSDLRPLLDRAERGAILLPPDLLEIKFTLQRARQLR-TLLTRIESS---- 112
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
F L +M + L++ I +++ G + DSASP L + R ++++ + +L +D
Sbjct: 113 --FPHLAEMAADIEPCDHLVEQISHCINDRGDVMDSASPELARIRSELRIAQERLLSTLD 170
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+I + + E V+ GR I A+ + + +G++ S+SG IEPL V
Sbjct: 171 RIIHSADIRPYLQEALVTQRQGRYVIPIRAEYKGNIEGIIHDQSASGATLFIEPLKVVQQ 230
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ +++ K +LL L+ + + + + + + +LD A+A Y+ + T
Sbjct: 231 NNAVRELELQEEKEVRRILLELSTAVAEEAVYLRRNVQALARLDFTFAKARYAYALDATV 290
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + LP +RS T + +++ I L +A HPL
Sbjct: 291 PEM-LPFQPRRSKQKRDETEE-AAAHPGSIIDLRRARHPL-------------------- 328
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
L P + VPID+++ T ++VITGPNTG
Sbjct: 329 ----------------------LDPQTV----------VPIDVYLDDDTYIIVITGPNTG 356
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKTVGL +MA+SGL I + +++ F+ ++ADIGDEQS+ Q+LSTFS H+ I
Sbjct: 357 GKTVTLKTVGLLTLMAQSGLMIPADVGSRLSVFEGIYADIGDEQSIEQNLSTFSSHMTNI 416
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ ++ SLVLLDE+GAGT+P EG+AL ++LLE + G + T ATTH+ +LK +
Sbjct: 417 IAILEEADPHSLVLLDELGAGTDPEEGSALAIALLENLRDRG-ITTFATTHYSDLKLYAH 475
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA +EFD L PTY++ G+PGRS+A+ IA RLGL ++V+ A + + +
Sbjct: 476 NTPGVRNASVEFDVETLSPTYELSIGLPGRSNALTIARRLGLNPVIVEKAESIVRPDTLQ 535
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++++ ++ R + + LE A+ +R LL A R++ Q I
Sbjct: 536 ADKLLDDIRRARQEALEAAERAK-----ARERQAQLLE---------ADLRYQLAQ-IEQ 580
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP--SASQSLHCTKVGKNQHVLTSNF 764
A RS++ ++ + AR + + +Q R S + H + + + L
Sbjct: 581 A---RRSVIAETRALMQAELEAARKEIEQLRRQARSGFSTGTTAHEEFLARAEKELARRS 637
Query: 765 QQT--TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSK 822
Q T +V P +A ++ I+ VGD V V S G V+ + +
Sbjct: 638 QATEEVNRRVVVPGSAEERLIGSIE------------VGDTVWVPSLQASGEVLAIHSAS 685
Query: 823 EEIVVQVGNMK 833
E VQ+GN +
Sbjct: 686 NEADVQLGNFR 696
>gi|429204941|ref|ZP_19196222.1| DNA mismatch repair protein [Lactobacillus saerimneri 30a]
gi|428146803|gb|EKW99038.1| DNA mismatch repair protein [Lactobacillus saerimneri 30a]
Length = 786
Score = 245 bits (625), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 185/667 (27%), Positives = 321/667 (48%), Gaps = 98/667 (14%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
++L+VLE+DK+ + + T +G+ L + Q + ++ K G+
Sbjct: 4 KALQVLEYDKIRKKLVEYTTTEMGQRLALRMHPLVKQA---------QIQHHLDQTKDGA 54
Query: 112 CSLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
L L G L ++ ++ + + L E A+ +L+ + L++ R + E+
Sbjct: 55 DILRLKGGIPLPRLGNIRPFLKRLDIGASLNGQELAAIGLVLRTTNQLKVFFRDLLDEE- 113
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
++ + L Q++ +L + + ++ +D DG + D AS L+ R Q+ E ++ +
Sbjct: 114 ---VQLLSLDQLVDELVSLPQVGRRLLTAIDNDGFVTDEASSLLRSLRRQIATTETQIRE 170
Query: 228 LMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAV 284
+ R N + L + +I + R I + + F G++ S+SG +EP + V
Sbjct: 171 QLGQFTRGNNAKYLSNAIVTIRNDRYVIPVRQEYRNKFGGVVHDQSASGQTVFVEPKAIV 230
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+ L++ +++ + + +L L+ + +E++ + I QLD VNA+A Y+ +
Sbjct: 231 ELNNRLKRQQSAEREEVKRILAELSALIAPYTEELQANAHIIGQLDFVNAKARYAHAIKA 290
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
T P I + + +YL + +HPLL+ Q+A ++
Sbjct: 291 TEPII----------------------DTDNNVYLRQVWHPLLV------PQKAVRN--- 319
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
DI + + + ++ITGPN
Sbjct: 320 -------------------------------------------DIMLGKDYQAIIITGPN 336
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKTI LKT+GL MM +SGL I + E +++ F +FADIGDEQS+ Q+LSTFS H+
Sbjct: 337 TGGKTITLKTLGLVQMMGQSGLFIPAYEESRIGIFTDIFADIGDEQSIEQNLSTFSSHMV 396
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I NI+ + SLVL DE+GAGT+P EG +L +++L+A +G+ + +ATTH+ ELK
Sbjct: 397 NIVNILQHIDAHSLVLFDELGAGTDPQEGASLAIAILDAVGATGAYV-VATTHYPELKAY 455
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
+ NA MEFD L+PTY++L G+PGRS+A NI+ RLGL ++ A++L S
Sbjct: 456 GFERPGTINASMEFDVETLQPTYRLLLGIPGRSNAFNISRRLGLDETIIAAAQELTTQDS 515
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKIL---EHCASQRFRKV 701
++N +I ++ + Q E + L + LH +L + K++ H Q K
Sbjct: 516 QDLNAMITDLVAKRHQAEEEAIALQKHLEEAEKLHHDLAQAYEKLVAERSHLTEQAKMKA 575
Query: 702 QKISDAA 708
I A
Sbjct: 576 NDIVQVA 582
>gi|357237673|ref|ZP_09125014.1| MutS2 family protein [Streptococcus ictaluri 707-05]
gi|356753863|gb|EHI70966.1| MutS2 family protein [Streptococcus ictaluri 707-05]
Length = 778
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 199/652 (30%), Positives = 330/652 (50%), Gaps = 127/652 (19%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLC 253
+Q +++ G I++ ASPAL++ R Q+ E+ Q++ +++ +++ ++S +GR
Sbjct: 134 LQAINDGGFIENFASPALEKIRRQIAEEEQASRQMLQDIVKKQSDYLSEALIASRNGRSV 193
Query: 254 I---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ T ++++ G++ SSSG IEP + V +N+ + Q +A +L AL+
Sbjct: 194 LPVKNTYRNKVA--GVVHDISSSGSTVYIEPRALVQMNEVITQLQADERHELVRILRALS 251
Query: 310 EKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVS 369
+ ++ D++ + LD V A+ Y + T P I
Sbjct: 252 DMLRPYSDQLRNNAWLLGHLDFVRAKYYYMRDYKATIPKI-------------------- 291
Query: 370 SSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNL 429
++ +++L HPLL T
Sbjct: 292 --SKDKSLHLLSVRHPLL---------------------------------------TEA 310
Query: 430 SPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
P+++Q S ELA V+VITGPNTGGKTI LKT+GLA +MA+SGL IL
Sbjct: 311 VPNDLQFSK-ELA--------------VIVITGPNTGGKTIMLKTLGLAQLMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ ++ADIGDEQS+ Q+LSTFS H+ I +I+ Q+ SLVL DE+GAGT+
Sbjct: 356 ADKGSRVALFNEIYADIGDEQSIEQNLSTFSSHMTHIVSILDQADQDSLVLFDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG +L M++LE + S+ T+ATTH+ ELK DF ENA MEFD +LKPTY+
Sbjct: 416 PQEGASLAMAILEQLRLT-SIKTMATTHYPELKAYGIETDFVENASMEFDSTRLKPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA RLGL +V+ A+++ S ++N +I E+ + Q LE
Sbjct: 475 MQGVPGRSNAFEIASRLGLAPHIVKEAQEMTDTDS-DVNRII---EQLEAQTLESRKRLE 530
Query: 670 HFLMLSR-NLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA-S 727
H + + NL N R +K+ + + ++++K S + AQ++ A +
Sbjct: 531 HIKSVEQDNLKFN--RAVKKLYNEFSHAKDKELEKAS-----------QEAQEIVDMALT 577
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDK-VEHPATASSSVVKDI 786
++ +++ K LH K ++ + +T + K V P + + V+K
Sbjct: 578 ESEAILEK------------LHDKAELKPHQIIEA---KTELKKLVPEPNLSQNKVLK-- 620
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTVIK-VEPSKEEIVVQVGNMKWIMK 837
+ K+ P VGD + V+++G++GT++K V+ K E QVG +K +K
Sbjct: 621 ----KAKKLRAPRVGDGILVTAYGQRGTLVKQVKDKKWE--AQVGLIKMTLK 666
>gi|317059473|ref|ZP_07923958.1| DNA mismatch repair protein mutS [Fusobacterium sp. 3_1_5R]
gi|313685149|gb|EFS21984.1| DNA mismatch repair protein mutS [Fusobacterium sp. 3_1_5R]
Length = 778
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 224/805 (27%), Positives = 369/805 (45%), Gaps = 147/805 (18%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATL-----TQLWSINQTY---QDSLRLLDETNAAI 104
S RVLE+DKL V ++ E + T L S+ Q + QD +
Sbjct: 5 SHRVLEFDKLKEKVMTYLAIEKNVEEIINLKPFTDLSSLQQEFVYVQDCMDF-------- 56
Query: 105 EMQKHGSCSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI 163
MQ G LD+ + D+ + I+ + + L +E + L+F Q L
Sbjct: 57 -MQYDGG--LDVRHLKDICALTEKIKLI--GTYLEVDELWDININLRFFRIFQTQL---- 107
Query: 164 KEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
ED ++ L + Q+ R + I + +D + IKD AS L+ R ++L +
Sbjct: 108 -EDLG---KYKALRDYMKQVSPLRLIEDLISKAIDAEKQIKDDASLDLRDIRIHKKVLAQ 163
Query: 224 KLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLLS-----SSSGIGS 276
+ + D L + + F E ++ GR+ + +L FKGL+ SSSG
Sbjct: 164 NIRRKFDELFEEPSVSAAFQERIITERDGRMVVPV---KLDFKGLIKGIEHDRSSSGQTV 220
Query: 277 VIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARA 336
IEPLS V LN+++++ + +LL L+E+++ DEI K+ N I+ +D + A+A
Sbjct: 221 FIEPLSIVSLNNKMRELETKEKEEIRKILLRLSEQIRNHQDEIYKIGNMILYIDRLQAKA 280
Query: 337 TYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQ 396
+ L H P+ V E +YL KA HP +
Sbjct: 281 NFGLE----------------EACHVPM---VQGKE---ILYLEKARHPFI--------- 309
Query: 397 QAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTR 456
P E VP+ I + +
Sbjct: 310 ----------------------------------PKE---------KVVPLTFEIGKDYK 326
Query: 457 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSL 516
+L+ITGPNTGGKT+ LKT GL +MA SG+ I +S+ +++ +F VFADIGDEQS+ QSL
Sbjct: 327 ILLITGPNTGGKTVALKTAGLLTLMALSGIPIPASQNSRIGFFQGVFADIGDEQSIEQSL 386
Query: 517 STFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 576
S+FS H+ + +I+ Q LVLLDE+G+GT+P EG+A MS+++ E +I TT
Sbjct: 387 SSFSAHVTNLQDILEQVHRNCLVLLDELGSGTDPTEGSAFAMSIIDYLKEK-KCNSIITT 445
Query: 577 HHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 636
H+ E+K Y+ + E A MEFD L PTY++L G+PG S+A+ IA+RLG+P +++ A
Sbjct: 446 HYSEVKAHGYNEEGIETASMEFDTTTLSPTYRLLMGIPGESNALTIAKRLGIPQEIIEKA 505
Query: 637 RQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQ 696
+ + +I E++I + K++ L+ + L + +++ RK LE ++
Sbjct: 506 QSYISEDNKKI-ELMINNIKNKSESLDKMQAELTGLREAAKMNQEKWEEERKALEREKNE 564
Query: 697 RFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKN 756
+K S + + ++A +L+ K Q+ S Q+ ++ KN
Sbjct: 565 ILKKA-------------YEDSEKMMNEMRAKASALIEK-IQKEEHSKEQA---KQIQKN 607
Query: 757 QHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVI 816
++L+S ++ + ++ K +K+ K GD V V + + TV+
Sbjct: 608 LNMLSSALKE--------EKNKTITLNKTMKKKAHFKE------GDRVFVKNINQFATVL 653
Query: 817 KVEPSKEEIVVQVGNMKWIMKFTDI 841
K+ KE VQ G +K + F +I
Sbjct: 654 KINAMKESAQVQAGILKLEVPFEEI 678
>gi|315917841|ref|ZP_07914081.1| DNA mismatch repair protein mutS [Fusobacterium gonidiaformans ATCC
25563]
gi|313691716|gb|EFS28551.1| DNA mismatch repair protein mutS [Fusobacterium gonidiaformans ATCC
25563]
Length = 778
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 224/805 (27%), Positives = 369/805 (45%), Gaps = 147/805 (18%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATL-----TQLWSINQTY---QDSLRLLDETNAAI 104
S RVLE+DKL V ++ E + T L S+ Q + QD +
Sbjct: 5 SHRVLEFDKLKEKVMTYLAIEKNVEEIINLKPFTDLSSLQQEFVYVQDCMDF-------- 56
Query: 105 EMQKHGSCSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI 163
MQ G LD+ + D+ + I+ + + L +E + L+F Q L
Sbjct: 57 -MQYDGG--LDVRHLKDICALTEKIKLI--GTYLEVDELWDININLRFFRIFQTQL---- 107
Query: 164 KEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
ED ++ L + Q+ R + I + +D + IKD AS L+ R ++L +
Sbjct: 108 -EDLG---KYKALRDYMKQVSPLRLIEDLISKAIDAEKQIKDDASLDLRDIRIHKKVLAQ 163
Query: 224 KLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLLS-----SSSGIGS 276
+ + D L + + F E ++ GR+ + +L FKGL+ SSSG
Sbjct: 164 NIRRKFDELFEEPSVSAAFQERIITERDGRMVVPV---KLDFKGLIKGIEHDRSSSGQTV 220
Query: 277 VIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARA 336
IEPLS V LN+++++ + +LL L+E+++ DEI K+ N I+ +D + A+A
Sbjct: 221 FIEPLSIVSLNNKMRELETKEKEEIRKILLRLSEQIRNHQDEIYKIGNMILYIDRLQAKA 280
Query: 337 TYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQ 396
+ L H P+ V E +YL KA HP +
Sbjct: 281 NFGLE----------------EACHVPM---VQGKE---ILYLEKARHPFI--------- 309
Query: 397 QAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTR 456
P E VP+ I + +
Sbjct: 310 ----------------------------------PKE---------KVVPLTFEIGKDYK 326
Query: 457 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSL 516
+L+ITGPNTGGKT+ LKT GL +MA SG+ I +S+ +++ +F VFADIGDEQS+ QSL
Sbjct: 327 ILLITGPNTGGKTVALKTAGLLTLMALSGIPIPASQNSRIGFFQGVFADIGDEQSIEQSL 386
Query: 517 STFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 576
S+FS H+ + +I+ Q LVLLDE+G+GT+P EG+A MS+++ E +I TT
Sbjct: 387 SSFSAHVTNLQDILEQVHRNCLVLLDELGSGTDPTEGSAFAMSIIDYLKEK-KCNSIITT 445
Query: 577 HHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 636
H+ E+K Y+ + E A MEFD L PTY++L G+PG S+A+ IA+RLG+P +++ A
Sbjct: 446 HYSEVKAHGYNEEGIETASMEFDTTTLSPTYRLLMGIPGESNALTIAKRLGIPQEIIEKA 505
Query: 637 RQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQ 696
+ + +I E++I + K++ L+ + L + +++ RK LE ++
Sbjct: 506 QSYISEDNKKI-ELMINNIKNKSESLDKMQTELTGLREAAKMNQEKWEEERKALEREKNE 564
Query: 697 RFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKN 756
+K S + + ++A +L+ K Q+ S Q+ ++ KN
Sbjct: 565 ILKKA-------------YEDSEKMMNEMRAKASALIEK-IQKEEHSKEQA---KQIQKN 607
Query: 757 QHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVI 816
++L+S ++ + ++ K +K+ K GD V V + + TV+
Sbjct: 608 LNMLSSALKE--------EKNKTITLNKTMKKKAHFKE------GDRVFVKNINQFATVL 653
Query: 817 KVEPSKEEIVVQVGNMKWIMKFTDI 841
K+ KE VQ G +K + F +I
Sbjct: 654 KINAMKESAQVQAGILKLEVPFEEI 678
>gi|124025008|ref|YP_001014124.1| DNA mismatch repair protein MutS family protein [Prochlorococcus
marinus str. NATL1A]
gi|123960076|gb|ABM74859.1| putative DNA mismatch repair protein MutS family [Prochlorococcus
marinus str. NATL1A]
Length = 804
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 231/820 (28%), Positives = 379/820 (46%), Gaps = 152/820 (18%)
Query: 43 DDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNA 102
D KK++++ ESL +LEW +C +S+FA T GR+ + + + + S LL +T
Sbjct: 9 DSKKAQIISESLDLLEWPTVCSHLSTFALTQQGRKKC--ESFDLPRNLSLSQELLSQT-- 64
Query: 103 AIEMQKHGSCSLDLTGVDLSLVKS----AIREVRRASPLRPNEALAVVA-LLQFSETLQL 157
L++ +D SL + + ++ + +A+ LL+ ++TL+
Sbjct: 65 -----------LEIGSLDSSLNEGISFDGVHDLENILLICSKGGIAIGEDLLKVADTLRA 113
Query: 158 SLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQ 217
+ R K D IR L++++ + L K + +DE G I D ASP L + R
Sbjct: 114 A-RKLRKLIFDQVIR-PRLSELLKDVATLPDLQKLLEFGLDEGGRIADRASPKLSELRRY 171
Query: 218 VQMLERKLYQLMDMLIRNENNESLFLEVSSIHGR--LCIRTG-ADQLSFKGLLL-SSSSG 273
+ + ++ +IR +S +GR L + G +DQ+ KG++ SS+SG
Sbjct: 172 RNSVRLQRKDILQDIIRKYGGLLQDNIISERYGRPVLAFKAGTSDQI--KGMVHDSSASG 229
Query: 274 IGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVN 333
+EP + + + L + + ++ E +L ++++ ++ I ++ ++Q++
Sbjct: 230 NTIYVEPQVVISIGNRLAKIDSEISDEERRLLADWSKEVGLNAIVIAHLVEILLQIEFAL 289
Query: 334 ARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAY-HPLLLQQHK 392
+RA YS G P I + E +++ K + HPLL+
Sbjct: 290 SRARYSKWLNGV-PAIL--------------------DQEEHSLFEIKDFRHPLLV---- 324
Query: 393 QKTQQAWKDL-ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFI 451
W D E NT VP +
Sbjct: 325 ------WNDFHEKKNT------------------------------------VVPTSFDV 342
Query: 452 ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQS 511
A +V+ ITGPNTGGKT+ LK++GLAV+MAK+GL + + ++PW +VFADIGDEQS
Sbjct: 343 APDLKVVAITGPNTGGKTVALKSIGLAVLMAKAGLLLPCTGSPRLPWCKNVFADIGDEQS 402
Query: 512 LSQSLSTFSGHLKQIGNI---ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
L Q+LSTFSGH+ +I I I +LVLLDE+GAGT+P EGTAL M+LL+ A
Sbjct: 403 LQQNLSTFSGHILRISRILDAIDVFPGTTLVLLDEVGAGTDPTEGTALAMALLQVMANRA 462
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
LTIATTH G+LK LKYS+ FENA + FD ++PT+ + WG+PGRS+AI I++RLGL
Sbjct: 463 R-LTIATTHFGQLKALKYSDSRFENASVSFDSETIQPTFHLQWGIPGRSNAIEISKRLGL 521
Query: 629 PGIVVQNARQLYGAASAE-INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLL---- 683
V+ +A++ + +N+VI +E+ + + +A L + LH+ LL
Sbjct: 522 DEQVIISAQKFINPERVDNVNQVIQGLEKQRERQQSAAEDAAALLAKTELLHEELLNSWQ 581
Query: 684 RTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPS 743
+ R++ E RF+ I + R L+ + Q S AR + +R +Q+
Sbjct: 582 KQRQQSEEFNEQGRFKLESSIREGQKEVRHLIKRLRDQ-NASGETAR-IAGQRLRQIE-- 637
Query: 744 ASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE--LPNVG 801
K + R+ T+ P +G
Sbjct: 638 ----------------------------------------KGYRNDKRINHTQSWTPKIG 657
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ V +SS GK G +I ++ V G + + T++
Sbjct: 658 EKVRLSSIGKAGEIISFSDDGMQLTVLCGVFRSKVNLTEV 697
>gi|222151569|ref|YP_002560725.1| recombination and DNA strand exchange inhibitor protein
[Macrococcus caseolyticus JCSC5402]
gi|222120694|dbj|BAH18029.1| recombination and DNA strand exchange inhibitor protein homolog
[Macrococcus caseolyticus JCSC5402]
Length = 783
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 228/798 (28%), Positives = 369/798 (46%), Gaps = 146/798 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLG-REATLTQLWSINQTYQDSLRLLDETNAAIEM-QKH 109
++L +LE++K+ V +F + L ++ +TQ S L L+E IEM Q
Sbjct: 9 KALNILEYNKIIERVDAFTQNELSSKKVRMTQPISDKAEIDSMLAQLEEARL-IEMTQTE 67
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR-----AAIK 164
S+ LS ++S +R S L+VV L + +++ R A +
Sbjct: 68 PGMSM------LSDIQSLVRRAVIGS------VLSVVELNKIKNNIKVVNRYKTYIANLY 115
Query: 165 EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
E+ +L I M QL L +SI DE ++ D ASP L + R ++ + R+
Sbjct: 116 EERELEIPVM--YHKFQQLPQVTELAESIQSKCDE-TTLFDHASPKLSEIRQEMNRINRR 172
Query: 225 LYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLL-SSSSGIGSVIEP 280
+ + ++ ++R+ NN+ + V+ +GR I ++ + F G++ +SSSG IEP
Sbjct: 173 IKERLESIVRSSNNQKKLSDAIVTIRNGRQVIPVRSEYKQDFPGIVHDTSSSGQTFYIEP 232
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
S V L+ EL + E +L LT ++ + + + + LDV+ A+A Y
Sbjct: 233 NSIVQLSTELSAVTHREQEEVERILYELTNEVAEYDNALTYSTDVLSDLDVLMAKAKYGN 292
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
PN+ T+ LP A+HPLL
Sbjct: 293 RNKMVMPNVV----------------------NARTVDLPGAWHPLL------------- 317
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
A+T ++ N+S FI T+ ++I
Sbjct: 318 ---PADTVVK----------------NNIS-------------------FIG-DTQTVII 338
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT+ LKT GL ++M +SG+ I ++E A + FD VF DIGDEQS+ QSLSTFS
Sbjct: 339 TGPNTGGKTVTLKTTGLIILMTQSGMMIPAAEGATISVFDEVFCDIGDEQSIEQSLSTFS 398
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H+ I +I+ + TS S V+ DE+GAGT+P EG AL MS+L+ E +++T+ATTH+ E
Sbjct: 399 SHMTNIVSILKEMTSNSFVMFDELGAGTDPSEGAALAMSILDRCLEQ-NVMTMATTHYPE 457
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK Y+ NA +EFD L PTY++L GVPG+S+A +IA++LGL ++++ARQ+
Sbjct: 458 LKAYSYNRKHVMNASVEFDIETLSPTYRLLMGVPGKSNAFDIAKKLGLSPSIIKHARQMI 517
Query: 641 GAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRK 700
EI+ +I +E Q + + ++LH +L +K + +Q+
Sbjct: 518 QMDDVEIDNMIKSLESNAKQMEDDRIFTEQLKLEVQSLHSDL----KKNFDSYLAQKENL 573
Query: 701 VQKIS-DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL---RPSASQSLHCTKVGKN 756
+++ DA I + K A +L + +S + +L R + H TK
Sbjct: 574 IERAKQDANKIVKD-AEKEADELLKTLRNLKSNADIKENELIEKRSKLGEMYHETK---- 628
Query: 757 QHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVI 816
IK + + E+ GD V V S+G+KG ++
Sbjct: 629 -----------------------------IKADKKSTKNEVIEKGDHVKVLSYGQKGVIL 659
Query: 817 KVEPSKEEIVVQVGNMKW 834
V+ +E +VQ+G +K
Sbjct: 660 DVD--GKEAIVQMGIIKM 675
>gi|374296809|ref|YP_005047000.1| MutS2 family protein [Clostridium clariflavum DSM 19732]
gi|359826303|gb|AEV69076.1| MutS2 family protein [Clostridium clariflavum DSM 19732]
Length = 793
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 215/795 (27%), Positives = 371/795 (46%), Gaps = 115/795 (14%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
+++R+LE++K+ + S ++LG + QL N + + L + ++ + + GS
Sbjct: 4 KTIRILEYNKIIDKLVSLTASTLGADLA-RQLVPDNDIEKVKINLKETSDGVNFISRRGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQ-LSLRAAIKEDADLY 170
L + ++ ++R S L P E + + +L+ L+ S A +KE D
Sbjct: 63 PPLG----GIHDIRDSVRRAEIGSMLNPGELMRIANVLRAVRNLKNYSNSANVKEGEDNI 118
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+ ++I L + + I + + I D+ASPAL R Q++ + + ++
Sbjct: 119 V-----GELIECLEAAKRIEDKINLCIVSEEEISDNASPALGSIRRQIRHAQNSIKDKLN 173
Query: 231 MLIRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLL-SSSSGIGSVIEPLSAVPL 286
LIR+ + E + ++ G R I + + GL+ SS+SG IEP++ V
Sbjct: 174 ELIRSPKYQKYMQEPIVTMRGERYVIPVKQEYRTEVPGLIHDSSASGATLFIEPMAVVEA 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ +++ + E +L L+ + E+ +N + +LD + A+A
Sbjct: 234 NNAIRELKIKEEAEIERILRELSCDVAEIAVELNTNINLLAKLDFIFAKA---------- 283
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
K SL + V K+++ E I + K HPL
Sbjct: 284 ---------KLSLEYNCVCPKLNN---EGKIIIKKGRHPL-------------------- 311
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
L P + VPID +I LV+TGPNTG
Sbjct: 312 ----------------------LVPKTV----------VPIDFWIGEDFHTLVVTGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKTVGL +MA++GLHI + E + F+ VFADIGDEQS+ QSLSTFS H+K I
Sbjct: 340 GKTVTLKTVGLFTLMAQAGLHIPAGEGTVLSVFNKVFADIGDEQSIEQSLSTFSSHMKNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
NI+ ++LVL DE+GAGT+P EG AL M++LE + G + +ATTH+ +LK
Sbjct: 400 VNILENIDDRTLVLFDELGAGTDPTEGAALAMAILEHLKDRGCTV-VATTHYSQLKVYAV 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + ENAC EFD LKPTYK+L GVPGRS+A I++RLGL V++ A+ + +
Sbjct: 459 TTPYVENACCEFDVETLKPTYKLLIGVPGRSNAFAISKRLGLTDSVIERAKSYLTSEEIK 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++++ +E+ +++++ + + ++ L + + + ++ +K + + +
Sbjct: 519 FEDMLLNIEK-------NLNQSENEKLQAQLLKQEAEKIKSEMENEKRKLEEKKEKILRE 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A AR L+ + + S+ R + +R A++ + L SN
Sbjct: 572 AREEARKLLLNAKHEADNILSEMRRIQKERENIQSQKAAEEMRLK--------LKSN--- 620
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
+D +E + S + + P+ + GD V + + ++GTVI E +
Sbjct: 621 --IDTIEDALSKSVMPKNTLVKPPKNLKP-----GDSVLIVNLNQRGTVITPPDRDGEAI 673
Query: 827 VQVGNMKWIMKFTDI 841
VQVG MK + T++
Sbjct: 674 VQVGIMKINVHITNL 688
>gi|72383421|ref|YP_292776.1| MutS 2 protein [Prochlorococcus marinus str. NATL2A]
gi|72003271|gb|AAZ59073.1| MutS 2 protein [Prochlorococcus marinus str. NATL2A]
Length = 804
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 232/819 (28%), Positives = 377/819 (46%), Gaps = 150/819 (18%)
Query: 43 DDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNA 102
D KK++++ ESL +LEW +C +S+FA T GR+ + + + + S LL +T
Sbjct: 9 DSKKTQIISESLDLLEWPTVCSHLSTFALTQQGRKKC--ESFDLPRNLSLSQELLSQT-- 64
Query: 103 AIEMQKHGSCSLDLTGVDLSLVKS----AIREVRRASPLRPNEALAVVA-LLQFSETLQL 157
L++ +D SL + + ++ + +A+ LL+ ++TL+
Sbjct: 65 -----------LEIGSLDSSLNEGISFDGVHDLENILLICSKGGIAIGEDLLKVADTLRA 113
Query: 158 SLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQ 217
+ R K D IR L++++ + L K + +DE G I D ASP L + R
Sbjct: 114 A-RKLRKLIFDQVIR-PRLSELLKDVATLPDLQKLLEFGLDEGGRIADRASPKLSELRRY 171
Query: 218 VQMLERKLYQLMDMLIRNENNESLFLEVSSIHGR--LCIRTG-ADQLSFKGLLL-SSSSG 273
+ + ++ +IR +S +GR L + G +DQ+ KG++ SS+SG
Sbjct: 172 RNSVRLQRKDILQDIIRKYGGLLQDNIISERYGRPVLAFKAGTSDQI--KGMVHDSSASG 229
Query: 274 IGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVN 333
+EP + + + L + + ++ E +L ++++ ++ I ++ ++Q++
Sbjct: 230 NTIYVEPQVVISIGNRLAKIDSEISDEERRLLADWSKEVGLNAIVIAHLVEILLQIEFAL 289
Query: 334 ARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQ 393
+RA YS G P I ++ H P K HPLL+
Sbjct: 290 SRARYSKWLNGV-PAILDQEE------HSPFEIK-------------DFRHPLLV----- 324
Query: 394 KTQQAWKDL-ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA 452
W D E NT VP +A
Sbjct: 325 -----WNDFYEKKNT------------------------------------VVPTSFDVA 343
Query: 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSL 512
+V+ ITGPNTGGKT+ LK++GLAV+MAK+GL + + ++PW +VFADIGDEQSL
Sbjct: 344 PDLKVVAITGPNTGGKTVALKSIGLAVLMAKAGLLLPCTGSPRLPWCKNVFADIGDEQSL 403
Query: 513 SQSLSTFSGHLKQIGNI---ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 569
Q+LSTFSGH+ +I I I +LVLLDE+GAGT+P EGTAL M+LL+ A
Sbjct: 404 QQNLSTFSGHILRISRILDAIDVFPGTTLVLLDEVGAGTDPTEGTALAMALLQVMANRAR 463
Query: 570 LLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLP 629
LTIATTH G+LK LKYS+ FENA + FD ++PT+ + WG+PGRS+AI I++RLGL
Sbjct: 464 -LTIATTHFGQLKALKYSDSRFENASVSFDSETIQPTFHLQWGIPGRSNAIEISKRLGLD 522
Query: 630 GIVVQNARQLYGAASAE-INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLL----R 684
V+ +A++ + +N+VI +E+ + + +A L + LH+ LL +
Sbjct: 523 EQVIISAQKFINPERVDNVNQVIQGLEKQRERQQSAAEDAAALLAKTELLHEELLNSWQK 582
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
R++ E RF+ I + R L+ + Q S AR + +R +Q+
Sbjct: 583 QRQQSEEFNEQGRFKLESSIREGQKEVRHLIKRLRDQ-NASGETAR-IAGQRLRQIE--- 637
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE--LPNVGD 802
K + R+ T+ P +G+
Sbjct: 638 ---------------------------------------KGYRNDKRINHTQSWTPKIGE 658
Query: 803 LVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V +SS GK G +I ++ V G + + T++
Sbjct: 659 KVRLSSIGKAGEIISFSDDGMQLTVLCGVFRSKVNLTEV 697
>gi|386319584|ref|YP_006015747.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus pseudintermedius ED99]
gi|323464755|gb|ADX76908.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus pseudintermedius ED99]
Length = 782
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 208/728 (28%), Positives = 343/728 (47%), Gaps = 121/728 (16%)
Query: 121 LSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMI 180
LS V+ I+ + L E A+ L+Q + + + ED + + + L +
Sbjct: 68 LSRVQPYIKRSQIGGTLNVQELNAIKTLIQVQNQFK-TFYNQLVEDEET-VNYEILDGQM 125
Query: 181 MQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNE- 239
QL V L +SI Q D + DSAS L+ R ++ +++ +D ++++ +N+
Sbjct: 126 QQLPVLTHLYQSIHQKCDTQ-DLFDSASMELQSIRSRIAKTNQRVRAQLDRMVKSTSNQK 184
Query: 240 ---SLFLEVSSIHGRLCIRTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARA 295
+ V + + +R Q F G++ S+SG IEP + V LN+++ + R+
Sbjct: 185 KLSDAIVTVRNERNVIPVRAEYRQ-DFNGIVHDQSASGQTLYIEPSAVVELNNQISRLRS 243
Query: 296 SVTKAEEDVLLALTEKMQVDLDE--IEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQ 353
+ +L LT ++ + + I + + G LD + +A Y+ GT P +
Sbjct: 244 EEATEVQRILAELTAEVAEEAEACLISEQVMG--HLDFLIGKARYAAKIKGTKPTFAV-- 299
Query: 354 DMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRK 413
E +YLPKA+HPLL +D ANT
Sbjct: 300 --------------------ERQVYLPKAFHPLL-----------DRDTVVANT------ 322
Query: 414 LYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLK 473
I + ++ITGPNTGGKT+ LK
Sbjct: 323 -----------------------------------IEFESSIQTVIITGPNTGGKTVTLK 347
Query: 474 TVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQS 533
T+GL ++MA+SGL I + + +++ FD+VF DIGDEQS+ QSLSTFS H+K I NI+ ++
Sbjct: 348 TLGLIILMAQSGLLIPTLDGSQLSVFDNVFCDIGDEQSIEQSLSTFSSHMKTIVNILEEA 407
Query: 534 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 593
+SL+L DE+GAGT+P EG AL MS+L+ G+L+ +ATTH+ ELK Y+ + N
Sbjct: 408 NDKSLILFDELGAGTDPSEGAALAMSILDHVHGMGALV-MATTHYPELKAYSYNREGVMN 466
Query: 594 ACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIE 653
A +EFD L PTYK+L GVPGRS+A +I++RLGL ++ +A+ + G EINE+I
Sbjct: 467 ASVEFDVDTLSPTYKLLMGVPGRSNAFDISKRLGLGLKIINHAKSMIGQDEQEINEMIAS 526
Query: 654 MERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARS 713
+E+ + + E + + +H +L R E + R +++ D
Sbjct: 527 LEKNAKRVDDQRIELDRLVREASQIHNDLSRA----YEQYQNMESRLIEEAKD------- 575
Query: 714 LVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVE 773
A Q +A + + K + +R + ++ + L ++
Sbjct: 576 ----KANQRVKAAMEEADDILKSLRDMRDQKGAEVKEHELIDQRKRLEDQYE-------- 623
Query: 774 HPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
K IKQ+ + ++ + GD V V S+G+KG V++V S EE VVQ+G +K
Sbjct: 624 ---------AKSIKQNVQKQKWDEIKAGDEVKVLSYGQKGEVLEV-LSDEEAVVQMGIIK 673
Query: 834 WIMKFTDI 841
+ +D+
Sbjct: 674 MKLPLSDL 681
>gi|315649009|ref|ZP_07902103.1| MutS2 family protein [Paenibacillus vortex V453]
gi|315275690|gb|EFU39044.1| MutS2 family protein [Paenibacillus vortex V453]
Length = 789
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 241/798 (30%), Positives = 382/798 (47%), Gaps = 132/798 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLG--REATL---TQLWSINQTYQDSLRLLDETNAAIEMQK 108
L+ LE+ K+ ++++ + +TS+G R L T+L ++ LL T+ A + +
Sbjct: 6 LQTLEYRKILNTLTQYTQTSMGNLRAEALKPETELEAVKD-------LLAATDQAYTVDR 58
Query: 109 -HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
G+ S ++ + A++ R L P+E LA + S ++ + AA+ ED
Sbjct: 59 LKGNPSFR----GITDINDALKRARIGGTLSPHELLATSNTIHGSRRIKRFI-AALHEDE 113
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
+ I F L+ +I + + L +I +D+ + DSAS L Q R +++ E ++ +
Sbjct: 114 QIEILF-NLSDLISE---QKPLEDAIRLCIDDAAEVLDSASAELSQIRRELRGGEVRIRE 169
Query: 228 LMDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSA 283
++ +IR+++ + + + +I G R I A+ S G ++ SG G+ IEP S
Sbjct: 170 KLESMIRSQSVAKMLQDQLITIRGDRFVIPVKAEYRSHFGGIVHDQSGSGATLFIEPESI 229
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V +N++L++ R + E +L LT ++ D + L+ I QLD + A+A +
Sbjct: 230 VAMNNKLRETRMREEREIEVILQKLTAQVGEQADLLSMDLDLIGQLDFIFAKARLAHVMR 289
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
+ P + ++R + I L K HPL+ Q D+E
Sbjct: 290 ASLPRM---------------------NDRGY-IKLRKGRHPLI-----PMDQVVPLDVE 322
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
NT T ++V TGP
Sbjct: 323 LGNT----------------------------------------------YTSIIV-TGP 335
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT+GL +MA SGL I + E +++ FD+++ADIGDEQS+ QSLSTFS H+
Sbjct: 336 NTGGKTVTLKTIGLLNLMAMSGLFIPAEEGSQMCVFDAIYADIGDEQSIEQSLSTFSSHM 395
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I I+ Q T +SLVLLDE+GAGT+P EG+AL +S+LE G + IATTH+ ELK
Sbjct: 396 TNIIRILGQMTQKSLVLLDEVGAGTDPAEGSALAISILEHIHRMGCRM-IATTHYSELKA 454
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
Y NA MEFD L PTY++L GVPGRS+A IAERLGLPG +++ AR
Sbjct: 455 YAYERKGVINASMEFDINTLSPTYRLLVGVPGRSNAFAIAERLGLPGSILEFAR------ 508
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
EV E +R + + + E RH + R + + RK +E + ++QK
Sbjct: 509 ----GEVKEEDQRVE-HMIASLEENRHTAEMEREKAEQV----RKEMEELRVRHEHELQK 559
Query: 704 ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+ + LV K+ + +ARS + LR A + K +H L +
Sbjct: 560 LEEQKD---KLVDKARMEARQIVDKARSEAEEIISDLRKIALEEGASVK----EHKLIAA 612
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
++ +D E + + KQ +R+ P GD V V S +KG V+++ SK
Sbjct: 613 RKR--LDDAEPQQGKKTGGQRSAKQ----QRSIEP--GDEVRVFSLNQKGHVVEMTGSK- 663
Query: 824 EIVVQVGNMKWIMKFTDI 841
E VVQ+G MK + D+
Sbjct: 664 EAVVQLGIMKMKVALDDL 681
>gi|126652668|ref|ZP_01724829.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. B14905]
gi|126590517|gb|EAZ84635.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. B14905]
Length = 788
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 231/807 (28%), Positives = 383/807 (47%), Gaps = 148/807 (18%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQT-YQDSLRLLDETNAAIEMQKHGS 111
+L+ LE+DK+ V+++ +S+G+ A + +L + QT + ++LL+E + + + +
Sbjct: 6 ALKTLEYDKVRQQVATYCTSSIGKSA-IEEL--VPQTDFDKVVQLLEEMDEGLSILR--- 59
Query: 112 CSLDLTGVDLSLVKSAIREVR-RASPLRPNEALAVVALLQFSETLQLS--LRAAIKE-DA 167
V ++ I +VR A + LA + L++ S T++ S LR I++ +A
Sbjct: 60 -------VKGNVPMGGIFDVRPSARRAQIGGMLAAIELMEISSTIRASRILRNFIEDLEA 112
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
D I + V L I +D++G++ DSAS L+ R ++ E K+
Sbjct: 113 DEVIEIPHFIAKKETMPVLTGLQHEINNCIDDNGAVLDSASTTLRTIRQSLRSEEAKVRS 172
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSA 283
++ LIR N + + V+ + R I + G ++ SSSG IEP S
Sbjct: 173 KLESLIRGSNASKMLSDTLVTIRNDRFVIPVKQEYRHHYGGIVHDQSSSGQTLFIEPDSI 232
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQ---VDLDEIEKMLNGIIQLDVVNARATYSL 340
V N+E+ + + E +LLAL+ +Q DL + K+L I DV+ A+ Y
Sbjct: 233 VQANNEIHRLKMKEQAEVERILLALSAMVQDVAPDLFNLVKVLGDI---DVILAKGKYGQ 289
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
+ T P + ++ I L +A HPLL
Sbjct: 290 ANKCTMPKM----------------------NQDGYIRLVRARHPLL------------- 314
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
P + V P DI + +VI
Sbjct: 315 ------------------------------PIDTAV---------PNDIEFGKDITAIVI 335
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT+ LKTVGL +MA++GL + + + +++ F +FADIGDEQS+ QSLSTFS
Sbjct: 336 TGPNTGGKTVTLKTVGLCTLMAQAGLPVPALDGSQLAVFKQLFADIGDEQSIEQSLSTFS 395
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H+ I +I+ + +SLVL DE+GAGT+P EG AL +S+L+ G+ + +ATTH+ E
Sbjct: 396 SHMVNIVDILQKFDDESLVLFDELGAGTDPQEGAALAISILDEVHGRGARV-MATTHYPE 454
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK Y+ NA +EFD L PTY++L GVPGRS+A I+ RLGLP +++ A+
Sbjct: 455 LKAYGYNRPGVANASVEFDIETLSPTYRLLIGVPGRSNAFEISSRLGLPETIIERAKGFT 514
Query: 641 GAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL------LRTRRKILEHCA 694
G E+ +I +E + Q + + L+ S +L K L R++ L+ A
Sbjct: 515 GTDRHEVESMIASLEETRRQSEDDAERSHALLLESESLRKELQDKLQAYDERKEALDKKA 574
Query: 695 SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG 754
++ RK+ + +A A ++ + +++R +A Q +
Sbjct: 575 KEKARKI--VEEAKHEAEGIIAE-------------------LREMRKNADQVV------ 607
Query: 755 KNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVK-RTELPNVGDLVHVSSFGKKG 813
+H L + ++E ++ V +K++ +VK R + VGD V V S+G++G
Sbjct: 608 -KEHELIEARK-----RLEEATPLDNNKV--LKKAAQVKARAQNLVVGDEVKVLSYGQRG 659
Query: 814 TVIKVEPSKEEIVVQVGNMKWIMKFTD 840
T+++ + S E VVQ+G +K MK +D
Sbjct: 660 TLLE-KVSNTEWVVQMGILK--MKISD 683
>gi|306490923|gb|ADM95040.1| mismatch repair ATPase [uncultured candidate division JS1
bacterium]
Length = 793
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 194/666 (29%), Positives = 319/666 (47%), Gaps = 115/666 (17%)
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+F +T+ L R L + I ++E+ IKD ASP LK+ R ++ E+K+ ++++
Sbjct: 119 KFPLITKKAYSLKYLRVLEREIKNCLNEEAEIKDEASPVLKKVRQKIHSTEKKIREVLER 178
Query: 232 LIRNENNESLFLEVSSI--HGRLCIRTG-ADQLSFKGLLLS-SSSGIGSVIEPLSAVPLN 287
+IRN N ++ + GR I ++ F+G++ S SG+ +EPL V N
Sbjct: 179 IIRNPENRTIIQDDIITIRQGRYVIPVKQQEKGKFQGVIHDKSESGVTVFMEPLIVVNFN 238
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+EL++ R K E +L LT + +I + +LD++ A+A S P
Sbjct: 239 NELRELRLQEKKEEYKILQRLTALVGQSTGDILSNYQYLGELDLIAAKAEVSRKMNALEP 298
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+ V R W +A HPLL
Sbjct: 299 KL-----------------NVDGHIRLW-----QARHPLL-------------------- 316
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
KG+ + P +M+ I K +L+ITGPNTGG
Sbjct: 317 --------------KGK----VVPIDME---------------IGEKYDILIITGPNTGG 343
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKTVGL +MA+SGLHI + ++V F +FADIGDEQS+ Q+LSTFS H+K I
Sbjct: 344 KTVTLKTVGLLHLMAQSGLHIPVAIDSEVTVFQKIFADIGDEQSMEQNLSTFSSHMKNII 403
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
+I++ + SL+LLDE+GAGT+P EG+AL M++L+ F G+ + ++TTHH LK Y
Sbjct: 404 SILNAADHNSLILLDELGAGTDPSEGSALAMAILDLFKTKGAKV-LSTTHHDSLKAYAYL 462
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
+ NA +EFDE L+P YK+ G+PG+S A ++A+RLGL IV++ A+ ++
Sbjct: 463 TERVRNARVEFDEKTLQPIYKLSIGLPGKSCAFSVAQRLGLSEIVLEKAKNYLEKEKIDL 522
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
+I +ME K Q +E + + + KN+ + + ++ E + F K +
Sbjct: 523 ENLIKQMENDKAQLIEDLKDIKE-------EKKNIEKIKEELKEDI--RNFEK-----EK 568
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
I ++ + L + ++A+ +++ L+ + + T+ KN
Sbjct: 569 LKIKLEAYQEAERILTTAQNKAKEIIN----FLKKKKAGTEEFTEEIKN----------- 613
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
+D ++ + K++ TE G+ V V S K+G +I + K+ +V
Sbjct: 614 -LDDLKKEIKNQAEKYNIFKETGNT-FTE----GESVFVKSLQKEGIIIDKDDKKQTYMV 667
Query: 828 QVGNMK 833
QVGN+K
Sbjct: 668 QVGNLK 673
>gi|319892134|ref|YP_004149009.1| Recombination inhibitory protein MutS2 [Staphylococcus
pseudintermedius HKU10-03]
gi|317161830|gb|ADV05373.1| Recombination inhibitory protein MutS2 [Staphylococcus
pseudintermedius HKU10-03]
Length = 782
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 209/727 (28%), Positives = 345/727 (47%), Gaps = 119/727 (16%)
Query: 121 LSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMI 180
LS V+ I+ + L E A+ L+Q + + + ED + + + L +
Sbjct: 68 LSRVQPYIKRSQIGGTLNVQELNAIKTLIQVQNQFK-TFYNQLVEDEET-VNYEILDGQM 125
Query: 181 MQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNES 240
QL V L +SI Q D + DSAS L+ R ++ +++ +D ++++ +N+
Sbjct: 126 QQLPVLTHLYQSIHQKCDTQ-DLFDSASMELQAIRSRIAKTNQRVRAQLDRMVKSTSNQK 184
Query: 241 LFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARAS 296
+ V+ + R I A+ + F G++ S+SG IEP + V LN+++ + R+
Sbjct: 185 KLSDAIVTVRNERNVIPVRAEYRQDFNGIVHDQSASGQTLYIEPSAVVELNNQISRLRSE 244
Query: 297 VTKAEEDVLLALTEKMQVDLDE--IEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQD 354
+ +L LT ++ + + I + + G LD + +A Y+ GT P +
Sbjct: 245 EATEVQRILAELTAEVAEEAEACLISEQVMG--HLDFLIGKARYAAKIKGTKPTFAV--- 299
Query: 355 MKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKL 414
E +YLPKA+HPLL +D ANT
Sbjct: 300 -------------------ERQVYLPKAFHPLL-----------DRDTVVANT------- 322
Query: 415 YGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKT 474
I + ++ITGPNTGGKT+ LKT
Sbjct: 323 ----------------------------------IEFESSIQTVIITGPNTGGKTVTLKT 348
Query: 475 VGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQST 534
+GL ++MA+SGL I + + +++ FD+VF DIGDEQS+ QSLSTFS H+K I NI+ ++
Sbjct: 349 LGLIILMAQSGLLIPTLDGSQLSVFDNVFCDIGDEQSIEQSLSTFSSHMKTIVNILEEAN 408
Query: 535 SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENA 594
+SL+L DE+GAGT+P EG AL MS+L+ G+L+ +ATTH+ ELK Y+ + NA
Sbjct: 409 DKSLILFDELGAGTDPSEGAALAMSILDHVHGMGALV-MATTHYPELKAYSYNREGVMNA 467
Query: 595 CMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEM 654
+EFD L PTYK+L GVPGRS+A +I++RLGL ++ +A+ + G EINE+I +
Sbjct: 468 SVEFDVDTLSPTYKLLMGVPGRSNAFDISKRLGLGLKIINHAKSMIGQDEQEINEMIASL 527
Query: 655 ERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSL 714
E+ + + E + + +H +L R E + R +++ D
Sbjct: 528 EKNAKRVDDQRIELDRLVREASQIHNDLSRA----YEQYQNMESRLIEEAKD-------- 575
Query: 715 VHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEH 774
A Q +A + + K + +R + ++ + L ++
Sbjct: 576 ---KANQRVKAAMEEADDILKSLRDMRDQKGAEVKEHELIDQRKRLEDQYE--------- 623
Query: 775 PATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
K IKQ+ + ++ + GD V V S+G+KG V++V S EE VVQ+G +K
Sbjct: 624 --------AKSIKQNVQKQKWDEIKAGDEVKVLSYGQKGEVLEV-LSDEEAVVQMGIIKM 674
Query: 835 IMKFTDI 841
+ +D+
Sbjct: 675 KLPLSDL 681
>gi|339623939|ref|ZP_08659728.1| MutS family ATPase [Fructobacillus fructosus KCTC 3544]
Length = 799
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 229/797 (28%), Positives = 384/797 (48%), Gaps = 125/797 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L+ LE++K+ + F +T G A + + +Q+ R L+ET A +++ HG
Sbjct: 6 LQTLEYEKVKGELLPFIQTEQG--AKIVAALQPSSDFQEVSRWLEETAEAAMVERLHGGL 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+L +DL+ +K +R ++ + L E +A+ +L+ + + + I+ D D+
Sbjct: 64 AL----LDLTDIKEQVRRLQIQASLNGKEIVALAKVLKATAAVAHFFQR-IQAD-DMQDS 117
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
L M+ QL + L K + Q +D++G + DSAS AL R Q+ E + Q +
Sbjct: 118 VPRLQSMVDQLVLLPELTKRVEQTIDDNGRVLDSASTALASFRRQMAGKEEAIRQRLANY 177
Query: 233 IRNENNESLFLEVSSIHGRLCIRTGADQLSFK----GLLLSSS-SGIGSVIEPLSAVPLN 287
R ++ + +L + + R ++ ++ G++ S SG IEP S V +
Sbjct: 178 TRGKS--ARYLSETIVTKRADRYVLPVKVEYRHQVPGIVHDQSQSGQTYYIEPQSVVEMA 235
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVD-LDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
+EL + R + AEED +LA M D L+++ + + +LD VNA+A + + +
Sbjct: 236 NELSETRV-LALAEEDRVLAELSVMLADHLEDLRQNAMVLGKLDFVNAKARLAKAQNAMA 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + S ++E + L +A+HPL+
Sbjct: 295 PEL--------------------SEKKE--VVLNQAWHPLI------------------- 313
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
GEK V DI + K L+ITGPNTG
Sbjct: 314 ----------------GEK-----------------KAVKNDIALGEKYETLIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI +KT+GL ++A+SGL I + V FD +FADIGDEQS+ Q+LSTFS H++ I
Sbjct: 341 GKTITIKTLGLLQLLAQSGLFITVGRPSVVAVFDEIFADIGDEQSIEQNLSTFSSHMENI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I++++ SL++ DE+GAGT+P EG AL M++L+ + G+ TIATTH+ ELK
Sbjct: 401 KGILTRTDENSLLIFDELGAGTDPAEGAALAMAILDRAKDLGA-QTIATTHYPELKLYGN 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
ENA M FD LKPTY++L GVPG+S+A+ IA RLG ++ +A+ + + +
Sbjct: 460 ERSGTENASMVFDVKTLKPTYQLLIGVPGQSNALAIASRLGFDQQLLADAKTMVNPENQK 519
Query: 647 INEVIIEM-ERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKIS 705
+NE+I ++ ++ + E AR KNL+ T+ ++ E + + +
Sbjct: 520 LNEMIKDLVDQRQAAKTERERLARD--------QKNLVATQTELEEKTLKLEKEQAKVML 571
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSLVHK-RAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
DA A LV K+ + +A L+ + R+++L L + K + + +
Sbjct: 572 DAKKRANELVSKTKR-------EAEQLIKEIRSERLAGGQKNKLSEQDLQKQKQAIAA-L 623
Query: 765 QQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEE 824
QQ+ DK+E K R KR + GD V VSS+ ++GT++K + +
Sbjct: 624 QQS--DKLEKN-----------KVLQRAKRVKELKPGDDVMVSSYNQQGTLVKKHKNG-Q 669
Query: 825 IVVQVGNMKWIMKFTDI 841
VQ+G +K ++ D+
Sbjct: 670 WEVQMGILKMLVDEDDL 686
>gi|448821778|ref|YP_007414940.1| MutS2 protein [Lactobacillus plantarum ZJ316]
gi|448275275|gb|AGE39794.1| MutS2 protein [Lactobacillus plantarum ZJ316]
Length = 787
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 237/804 (29%), Positives = 388/804 (48%), Gaps = 142/804 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE+ ++ ++ + ++ G++A L +L + + D R LDETN
Sbjct: 6 LNTLEYQQVKQQLAPYLVSATGQQA-LNELHPMT-SVADIQRALDETN------------ 51
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPN-EALAVVALLQFSETLQLS--LR---------A 161
G ++ +K I V R + ++P+ + LA+ A L SE Q+ LR A
Sbjct: 52 ---DGAEVYRLKGGI-PVARLADIKPHMKRLAIGATLNGSELGQVGRVLRTTRAITRFFA 107
Query: 162 AIKEDA-DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQM 220
+ EDA + IR L + +L + K + ++ DG I D ASP L + R ++
Sbjct: 108 ELLEDAPENDIRH--LFDEVAELVTLPDVTKRLATAIEGDGHITDEASPELSRIRSNIRR 165
Query: 221 LERKLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSV 277
E ++ M R + + L + +I + R I A+ S F G++ S+SG
Sbjct: 166 TETEIRNQMGHYTRGHDAKYLSDPIITIRNDRYVIPVKAENRSRFGGIVHDQSASGQTLF 225
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
IEP + + +ND L+Q + + + E+ +L AL+ + DEI + D +NA+A
Sbjct: 226 IEPQAVMAMNDRLRQNQVAEKQEEQRILEALSNLIAPYQDEIINNAAILGHFDFINAKAR 285
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
Y+ DMK + EP S + +YL +A HPL
Sbjct: 286 YA-------------HDMKAT---EPAVSPKNE------VYLRQARHPL----------- 312
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
+ P ++ V DI + +
Sbjct: 313 -------------------------------IDPRKV----------VANDISLGTDYQA 331
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
+VITGPNTGGKTI LKT+GL +MA+SGL I ++V ++ +FADIGDEQS+ Q+LS
Sbjct: 332 MVITGPNTGGKTITLKTLGLLQLMAQSGLFIPVEVGSRVGVYNEIFADIGDEQSIEQNLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H++ I + ++Q + SLVL+DE+GAGT+P EG AL +++L+A G+ + +ATTH
Sbjct: 392 TFSSHMENIESFLAQIDAHSLVLVDELGAGTDPQEGAALAIAILDAIGAKGTQV-VATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK ++ NA MEFDE LKPTY++L G+PGRS+A++IA+RLG+P +V AR
Sbjct: 451 YPELKAYGFNRPDTINASMEFDEETLKPTYRLLVGIPGRSNALDIAQRLGIPQAIVDQAR 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
L S ++N +I ++ + Q + + + S LH+ L E A Q+
Sbjct: 511 SLTDTDSQDLNAMIADLVTKRKQVEDEQLHLKTQVADSEKLHRQLKS------EFNAYQQ 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
RK Q I DA A ++V + S ++A +++ ++ S + ++ ++ +
Sbjct: 565 -RKDQLIEDAKVQANTIVEQ-------SKTKADAIISDLRKKQLASGTATVKENELIDAK 616
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L + QQ P + V++ R K + GD V V S+G++G +++
Sbjct: 617 GALNALEQQ--------PKLKKNRVLR------RAKAQHDFHEGDDVLVKSYGQRGVLMR 662
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ K E VQ+G +K MK +D+
Sbjct: 663 -QMGKHEWEVQLGILK--MKISDV 683
>gi|227888700|ref|ZP_04006505.1| MutS family DNA mismatch repair protein [Lactobacillus johnsonii
ATCC 33200]
gi|227850727|gb|EEJ60813.1| MutS family DNA mismatch repair protein [Lactobacillus johnsonii
ATCC 33200]
Length = 788
Score = 243 bits (620), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 224/800 (28%), Positives = 379/800 (47%), Gaps = 145/800 (18%)
Query: 57 LEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDL 116
LE++++ +S A T+ +E LT + S N DE +I+ + S L +
Sbjct: 9 LEYNRIIKQLSDLAITAPAKEQALTLMPSSN---------FDEVKKSIDQTRVLSNILRV 59
Query: 117 TG----VDLSLVKSAIREVRRASPLRPNEALAVVALL-------QFSETLQLSLRAAIKE 165
G D V+++++ ++ + L E + +L QF++ L E
Sbjct: 60 KGPMPITDFKDVRASLKRLKVKANLNGEELGNIFLILSLAKDVSQFTDDL---------E 110
Query: 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
+ ++ IR P+ + + L + L K + Q ++ DG++KD+AS L Q R +Q E +
Sbjct: 111 EREIDIR--PIEKTLKNLAIPEDLFKKLNQAIEYDGTVKDTASSKLMQLRHDIQSNETDI 168
Query: 226 YQLMDMLIRNENNESLFLEVSSIH-GRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLS 282
M+ I ++ + L + +I GR + + + F G++ S+SG +EP +
Sbjct: 169 KNHMNDYISGKHTQYLSENIVTIRDGRYVLPVKQEYKNKFGGVVHDQSASGQTLFVEPQA 228
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
+ LN+ Q A + +L+ L+E + EI+ + + QLD ++A++ + +
Sbjct: 229 VLVLNNRQQNLMAQERQEINRILIELSELAGMYQKEIKNNADALTQLDFLSAKSKLAKAM 288
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
T P L QD I L KA HPL+
Sbjct: 289 KATEP--VLNQD--------------------HVIKLRKARHPLI--------------- 311
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
+P ++ VP +I + ++ITG
Sbjct: 312 ---------------------------NPKKV----------VPNNIELGTSFDTMLITG 334
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKTI LKT+GL +MA++GL I + E +++ F+ ++ADIGDEQS+ QSLSTFS H
Sbjct: 335 PNTGGKTITLKTLGLLQLMAQAGLFITAEEGSQLTVFNEIYADIGDEQSIEQSLSTFSSH 394
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
+ QI I+ T LVL+DE+GAGT+P EG +L +++L+ + + + I TTH+ ELK
Sbjct: 395 MDQIIKIMKDVTEDDLVLIDELGAGTDPEEGASLAIAILDDLRGAQAKIAI-TTHYPELK 453
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642
Y+ NA MEFD KL PTY++ G+PG+S+A IA +LG+ VV AR L
Sbjct: 454 LYGYNRARTTNASMEFDLKKLAPTYRLRIGIPGQSNAFAIAHQLGMNETVVNKARSLMND 513
Query: 643 ASAEINEVIIEMERF--KTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRK 700
++IN++I ER +T+ E +HE L +N+ +++ T ++ L++ ++
Sbjct: 514 EDSDINKMI---ERLTEQTKAAEQLHET-----LKQNVDQSI--TLKRQLQNGLDWYNQQ 563
Query: 701 VQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVL 760
VQK + A K+ + L +A +++ +Q R A + KV + + L
Sbjct: 564 VQKQLEKAQ------EKADEMLAKKRQKADKIINDLEEQRR--AGGQVRTNKVIEAKGAL 615
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
+ E+ A + V++ R KR +VGD V V S+G++G + K +
Sbjct: 616 NKL-------ERENQNLAQNKVLQ------REKRRHDVSVGDTVKVLSYGQQGVITK-KL 661
Query: 821 SKEEIVVQVGNMKWIMKFTD 840
+ E VQ+G +K +K TD
Sbjct: 662 ADHEFEVQIGILK--VKVTD 679
>gi|253579597|ref|ZP_04856866.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849098|gb|EES77059.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 793
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 223/819 (27%), Positives = 368/819 (44%), Gaps = 167/819 (20%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGRE--------ATLTQLWSINQTYQDSL-RLLDETNA 102
++ + LE+ K+ + ++ A +S+G+E + ++ + +D+L RL + N
Sbjct: 4 KAYKALEYYKIINMLTDKASSSMGKEICRKLEPSTDIDEIRHMQTQTRDALTRLFQKGNI 63
Query: 103 AIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRA- 161
+ GS + V+ +++ + S L E LA+ +LL+ + ++ R+
Sbjct: 64 SF-----GS---------VKDVRGSLKRLEIGSSLGIGELLAICSLLENTNRVKAYSRSE 109
Query: 162 ---AIKEDAD-LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQ 217
++ + D ++ PLT L I + + + I D AS L+Q R
Sbjct: 110 RGDSLPDSLDGMFEALEPLT----------PLTTEIRRCILSEDEISDDASSNLRQIRRN 159
Query: 218 VQMLERKLYQLMDMLI----RNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLS---- 269
+++ +++ + L+ RN +S+ ++ +GR CI A+ +KG +
Sbjct: 160 MKITGDRIHTQLSSLVNGSARNYLQDSV---ITMRNGRYCIPVKAE---YKGQVPGMVHD 213
Query: 270 -SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQ 328
SS+G IEP++ V LN+++++ K E +L L+++ D I LN ++Q
Sbjct: 214 QSSTGSTLFIEPMAIVKLNNDIRELELEEQKEIEVILSTLSQQTAEQTDSIRADLNIMVQ 273
Query: 329 LDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL 388
LDV+ ARA+ ++ T P IF E I L +A HPL
Sbjct: 274 LDVIFARASLAMDMNATEP-IF---------------------NDEGRIRLKQARHPL-- 309
Query: 389 QQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPID 448
++ VPID
Sbjct: 310 --------------------------------------------------IDKKKAVPID 319
Query: 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD 508
I + +LVITGPNTGGKT+ LKTVGL +M +SGLHI + + +++ F+ V+ADIGD
Sbjct: 320 IRLGDDFDLLVITGPNTGGKTVSLKTVGLLTLMGQSGLHIPTLDRSELALFEEVYADIGD 379
Query: 509 EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
EQS+ QSLSTFS H+ + + + ++ SLVL DE+GAGT+P EG AL +++L E G
Sbjct: 380 EQSIEQSLSTFSSHMTNVVSFLKKANRHSLVLFDELGAGTDPTEGAALAIAILSHLHEQG 439
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+ T+ATTH+ ELK S ENAC EFD L+PTY++L GVPG+S+A I+ +LGL
Sbjct: 440 -IRTMATTHYSELKVYALSTSGVENACCEFDVETLRPTYRLLIGVPGKSNAFAISSKLGL 498
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK 688
P ++ A++ +V+ +E + E + +L + + K
Sbjct: 499 PDYIIDKAKEQISEQDESFEDVLSSLESSRITIENERREIEQYKQEIASLKSEMESKQEK 558
Query: 689 ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR------SLVHKRAQQLRP 742
+ E QR R +++ ++ A + A Q + + S V K Q LR
Sbjct: 559 LNE----QRDRIIRQANEEAHAVLREAKEYADQTMKMFHKFQKDHVDLSAVEKERQNLRK 614
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGD 802
H K K Q+T K + TA KDI ++GD
Sbjct: 615 ------HMNKAEKGM------TQKTAAKKPKKELTA-----KDI------------SLGD 645
Query: 803 LVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V V S KGTV +K + VQ+G ++ + +D+
Sbjct: 646 AVKVLSMNLKGTVSSRPDNKGFLFVQMGIIRSKVHISDL 684
>gi|159901402|ref|YP_001547649.1| MutS2 family protein [Herpetosiphon aurantiacus DSM 785]
gi|159894441|gb|ABX07521.1| MutS2 family protein [Herpetosiphon aurantiacus DSM 785]
Length = 806
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 200/671 (29%), Positives = 315/671 (46%), Gaps = 108/671 (16%)
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
F+PL + QL +L I + + DG + DSAS L + R +++ +L + + +
Sbjct: 114 FVPLHPLAEQLPNLATLEHEIERTIGPDGEVLDSASAELGRLRSAIRVAFNRLQERLQAI 173
Query: 233 IRNENNESLFLE--VSSIHGRLCIRTGADQL-SFKGLLLS-SSSGIGSVIEPLSAVPLND 288
I + + E ++ GR + A Q + +G++ SSSG IEPL+ V LN+
Sbjct: 174 INSSQYADVLQEPIITVRDGRYVVPVKAPQRRALRGIVHDQSSSGATLYIEPLATVELNN 233
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
+ ++ + + + + +L AL+ K+ + I + +LD+ A+A YS+S + P
Sbjct: 234 QWRELQLAEREEIQRILAALSGKIANEGMPIIVGVEATAELDLAFAKAKYSISLRASQPA 293
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
I P E T+ L KA HPLL Q
Sbjct: 294 INTP-------------VPADDLHPESTLSLLKARHPLLNQ------------------- 321
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
+L P D+++ T++++ITGPNTGGK
Sbjct: 322 -------------------------------DLVVPT--DVWLGGPTQMIIITGPNTGGK 348
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKTVGL +MA++GLHI + + +++P F +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 349 TVALKTVGLMALMAQAGLHIPAHQGSRLPIFGKIFADIGDEQSIEQSLSTFSSHMTNIIQ 408
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I+ + T SLVL DE+GAGT+P+EG AL +++E G L +AT+H+ ELK YS
Sbjct: 409 ILDRVTPDSLVLFDELGAGTDPVEGAALARAIIERLLNVGC-LAMATSHYAELKAFAYST 467
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
D ENA +EFD L PTY++ G+PGRS+A+ IAERLGL +++ AR + ++
Sbjct: 468 DGVENASVEFDVETLSPTYRLSIGLPGRSNALAIAERLGLKRDLIERARATISRDNVQVE 527
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKI--LEHCASQRFRKVQK-IS 705
+++ + R +T EA L L + R R++ E Q+ Q+ +
Sbjct: 528 DLLAAIHRERTT---AESEAARALELREDAELVRDRLSRELYEFEQDREQQLASYQRQLD 584
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQ 765
D R+ + + + S S +R + + Q+L ++V +
Sbjct: 585 DELREVRAELRRLRDEFR-SVSVSRQWMEQAEQRL----------SRVAER--------- 624
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELP---NVGDLVHVSSFGKKGTVIKVEPSK 822
V + P A VV P+V LP VGD V VSS G V+ ++
Sbjct: 625 ---VPQTPTPPKAKVPVV------PKVALAPLPRTIQVGDQVFVSSVKLSGVVLDLDEEA 675
Query: 823 EEIVVQVGNMK 833
E VQ+G +
Sbjct: 676 NEAEVQLGGFR 686
>gi|83815784|ref|YP_444790.1| MutS2 family protein [Salinibacter ruber DSM 13855]
gi|83757178|gb|ABC45291.1| MutS2 family protein [Salinibacter ruber DSM 13855]
Length = 819
Score = 242 bits (618), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 166/510 (32%), Positives = 255/510 (50%), Gaps = 71/510 (13%)
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
AD R PL L ++I ++DED SI+D ASP L++ R Q++ E +L
Sbjct: 121 ADAVARATPLP----------DLEETIASILDEDASIRDDASPELRRLRQQIRSKEEELR 170
Query: 227 QLMDMLIRNENNESLFL-EVSSIHG-RLCIRTGADQLSFKGLLLS-----SSSGIGSVIE 279
+D +R+ E E +++ G R+ I A S KG + S+SG IE
Sbjct: 171 TTLDKALRHAVREGHATGEQATLRGGRMVIPVRA---SAKGKVEGFVHDRSASGQTVYIE 227
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
P + + LN+E+++ +++ E +L +T+ ++ + D IE+ L + Q D++ A+A ++
Sbjct: 228 PAACLELNNEVRELQSAEQAEIERILRRVTDHVRAESDAIEENLTVLAQFDLLRAKARFA 287
Query: 340 LSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAW 399
G P + + E IY + +P+L Q H
Sbjct: 288 NRLGAVVPKL--------------------NDEGHVEIY--EGRNPVL-QLH-------- 316
Query: 400 KDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLV 459
RR R ++ L P E+ VP+D+ + R LV
Sbjct: 317 ---------FERRDAGDATDGRASGEEEALPPREV----------VPLDLELGADFRTLV 357
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
ITGPN GGKT+ +KTVGL +M GL + + ++ P FD + ADIGDEQS+ LSTF
Sbjct: 358 ITGPNAGGKTVTMKTVGLFSLMLAYGLPLPVAPHSSFPLFDQIVADIGDEQSIEDDLSTF 417
Query: 520 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579
S H+ + +++S +LVL+DE G GT+P EG AL ++LE E+G+ TIATTHHG
Sbjct: 418 SSHVSNLRHMLSAVGENALVLIDEAGTGTDPDEGAALAQAVLEQLTEAGA-RTIATTHHG 476
Query: 580 ELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 639
LKT + + EN MEFD+ L+PT++ GVPG S A IA R+GL G ++ AR L
Sbjct: 477 TLKTYAHEAEAVENGSMEFDQETLRPTHRYQEGVPGSSYAFEIARRMGLSGDLLDRARTL 536
Query: 640 YGAASAEINEVIIEMERFKTQFLEHVHEAR 669
G + +I ER + + +++AR
Sbjct: 537 AGTQKTAMENLITTFERRTQELEDELYDAR 566
>gi|357057959|ref|ZP_09118816.1| hypothetical protein HMPREF9334_00533 [Selenomonas infelix ATCC
43532]
gi|355374536|gb|EHG21830.1| hypothetical protein HMPREF9334_00533 [Selenomonas infelix ATCC
43532]
Length = 784
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 205/798 (25%), Positives = 379/798 (47%), Gaps = 135/798 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ES +VLE+ K+ + ++SFA T G++ + + S + Y + +RL ET A+++Q+ +
Sbjct: 4 ESFKVLEYGKITNWLASFASTICGKQLCRSVIPSGD--YDEVVRLHHETAEAVQVQQ--T 59
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
S G+ DL ++ +++ + L +E +V++ + ++ R DL
Sbjct: 60 QSPPFGGIYDL---RTLLKKASMGAVLEIDELRSVMSTMCGMRNVKYFFR-------DLV 109
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+ L M + + + + + +DE G+ +D ASP L++ ++Q + ++ + +
Sbjct: 110 LDVPHLKTMAKPIEILGMVERHLKDTIDEHGNFRDDASPELRRITRELQTAQARVKERLS 169
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
++ + N+ F E V+ R I + + F G++ S+SG +EPL+ V L
Sbjct: 170 AILHDAANQKYFQEAIVTVRDERYVIPVKQEYRNYFPGVIHDQSASGATLFVEPLATVEL 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ ++Q + + + +L L+ ++ + + + + ++D++ ARA +
Sbjct: 230 NNTVRQMGLAREQEIQRILQKLSTEIAQNAGILSENCTILSEMDLIFARAGLAREMQAYP 289
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + + ++L +A HPLL
Sbjct: 290 PTL----------------------NQSGVVHLKRARHPLL------------------- 308
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
P + V PIDI + + +L+ITGPNTG
Sbjct: 309 ------------------------PKDKVV---------PIDIELGQNFSILLITGPNTG 335
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ +KT+GL ++A+SG + ++ +++P + +++ADIGDEQS+ QSLSTFS H + I
Sbjct: 336 GKTVSMKTLGLLALLAQSGCFLPTAPDSEIPVYRNIYADIGDEQSIEQSLSTFSAHTRNI 395
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
II ++ L+LLDE+GAGT+P EG AL S++ F + G + +ATTH+ LKT Y
Sbjct: 396 VRIIDKAEQGDLILLDEVGAGTDPDEGAALARSIIAHFLQQG-IAVVATTHYAVLKTYAY 454
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ ENA +EFD L+PTY++L G+PG S+A +I+ +LGLP +V A
Sbjct: 455 AESGIENASVEFDLKTLRPTYRLLIGIPGASNAFSISRQLGLPQDIVARAEIYISEEHTH 514
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
V+ E+ER K + E R+ +++ LR R+ L + +
Sbjct: 515 FEHVVNELEREKQDYETKNRELRNKEAEIKSVEAR-LRAERETLSNTRQE---------- 563
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQ- 765
L+HK AR + ++ R SA +++ K + H + +
Sbjct: 564 -------LLHK-----------AREEANNIVREARRSAEETIKSLKDQFDDHGVKERRKV 605
Query: 766 -QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPN---VGDLVHVSSFGKKGTVIKVEPS 821
Q ++++ S ++++P V +T P+ GD+V++ S ++GTV+ V+
Sbjct: 606 IQEARNRLDEAYIQDS-----LQKNPAVGKTIRPDDIRSGDIVYIESLAQEGTVLSVQ-- 658
Query: 822 KEEIVVQVGNMKWIMKFT 839
+E+ VQVG ++ I+K +
Sbjct: 659 GKELTVQVGGLRTIVKMS 676
>gi|304436503|ref|ZP_07396477.1| DNA mismatch repair protein MutS [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304370549|gb|EFM24200.1| DNA mismatch repair protein MutS [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 785
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 208/797 (26%), Positives = 370/797 (46%), Gaps = 124/797 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ES +VLE++K+ ++S+A T+ G+E + + S + Y RL ET A+ + +
Sbjct: 4 ESFKVLEYEKIKTRLASYAATAYGKERCRSIMPSSD--YDHVARLQRETEEAVRVAQIQP 61
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
D + ++ ++ R L +E V + + ++ R + DA+L
Sbjct: 62 PPFD----GIHHLQEILKRAGRGILLELDELRLVKSTIGGMRDVKCFFRD-LSADAEL-- 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + ++ + L +++ +DE G+ +D ASP L++ +++ + ++ + +
Sbjct: 115 ----LKDLARRIEILGMLERNLKAAIDEYGNFRDDASPVLRRITNELRTAQSRVKERLSS 170
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLN 287
++ + + +F E V+ R I + S F G++ S+SG IEPL+ V LN
Sbjct: 171 ILHDAAYQKMFQEAIVTVRDERYVIPVKQEYRSQFPGVIHDQSASGATLFIEPLAIVELN 230
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ ++Q + + ++ LT ++ D + + LD++ ARA+ + P
Sbjct: 231 NTVRQMGIAREQEILRIMQRLTGEIARSADVLSANCTILSDLDLIFARASLAREMSAYPP 290
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+ R+ ++L +A HPL
Sbjct: 291 IL----------------------NRDGYVHLRRARHPL--------------------- 307
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
L P ++ VPIDI + + L+ITGPNTGG
Sbjct: 308 ---------------------LPPDKV----------VPIDIELGKTFSTLLITGPNTGG 336
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ +KT+G+ +M++SG + + +++P + +++ADIGDEQS+ QSLSTFS H + I
Sbjct: 337 KTVSMKTLGILALMSQSGCFLPAESGSEIPIYQNIYADIGDEQSIEQSLSTFSAHTRNIV 396
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
II ++T LVLLDE+GAGT+P EG AL S++E F + + T+ATTH+ +LKT Y+
Sbjct: 397 RIIDRATFGDLVLLDEVGAGTDPDEGAALARSIIEHFLMN-RIATVATTHYADLKTYAYT 455
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
ENA +EFD L+PTY++L G+PG S+A +I+ +LGLP +V A + A+
Sbjct: 456 QQGVENASVEFDLKTLRPTYRLLIGIPGASNAFSISRQLGLPEEIVARAEEYVSEDHAQF 515
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
V+ ++ER KT + E KN L +++ A R R
Sbjct: 516 ETVVHDLERAKTIYEE----------------KNQLLYKKETDVGRAESRLRA------- 552
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
R+ +S Q+L +AR + ++ R SA +++ K + H + +
Sbjct: 553 ---ERAAFEQSKQELL---HKAREEANNIVREARRSAEETIQSLKEQFDDHGIKERQKAI 606
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
+ ++ I R R GD V++ + ++GTV+ V+ +E+ V
Sbjct: 607 QAARSRLNEAYVHNISPKIPAEGRPVRPGEIQSGDTVYIRTLAQEGTVLSVQ--GKELSV 664
Query: 828 QVGNMKWIMKFTDIVTY 844
QVG ++ ++K D T+
Sbjct: 665 QVGGLRTMVKM-DACTF 680
>gi|373465637|ref|ZP_09557092.1| MutS2 family protein [Lactobacillus kisonensis F0435]
gi|371759887|gb|EHO48594.1| MutS2 family protein [Lactobacillus kisonensis F0435]
Length = 787
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 188/676 (27%), Positives = 317/676 (46%), Gaps = 121/676 (17%)
Query: 176 LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRN 235
+T ++ +L + ++ K +M VD+DG + DSAS L+ R + + + M I+
Sbjct: 120 ITGIVDKLTLMPTVTKRMMTSVDDDGRVLDSASSELRAIRKSISRTQTDIRTKMGKFIKG 179
Query: 236 ENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQ 292
+ + L + ++ R + AD + F G++ S+SG +EP + V +N++L++
Sbjct: 180 SDAKYLSEPIITVRDDRFVLPIRADYKQHFGGIVHDQSASGQTLYVEPSNVVEMNNQLRR 239
Query: 293 ARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLP 352
+ + +L LT ++ +E+ +N + QLD VNA+A Y+ G P I
Sbjct: 240 DQLAERAEVRRILGELTNLLRPYRNELMTNMNLVGQLDFVNAKAKYAHQTGSIQPRI--- 296
Query: 353 QDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRR 412
++ + L KA HP++ + + D+E
Sbjct: 297 -------------------SKDNVVNLRKARHPMI-----DRDKVVANDIE--------- 323
Query: 413 KLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICL 472
I K +++TGPNTGGKTI +
Sbjct: 324 --------------------------------------IGDKYSTIIVTGPNTGGKTITM 345
Query: 473 KTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ 532
KT+GL +M +SGL I ++E +++ FD VFADIGDEQS+ +LSTFS H+ I +++ +
Sbjct: 346 KTIGLLQLMGQSGLFITANEDSQIGAFDEVFADIGDEQSIEANLSTFSSHMDNIISMLDK 405
Query: 533 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 592
++ SLVLLDE+GAGT+P EG AL M++++A +G L IATTH+ ELK Y+
Sbjct: 406 ISNNSLVLLDELGAGTDPKEGAALAMAIIDAIHATGCEL-IATTHYPELKAFAYNRSGII 464
Query: 593 NACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVII 652
NA MEFD L+PTY+ L G+PG+S+A+NIA++LG P ++ NAR + + +IN +I
Sbjct: 465 NASMEFDVNTLRPTYRFLMGIPGQSNALNIAQKLGFPKQIIDNARSFTDSKNQDINNMIA 524
Query: 653 EMERFKTQFLEHVHEARHFLMLSRNLHKNLLR-------TRRKILEHCASQRFRKVQKIS 705
E+ + + + + L S LH+ L R ++ E + R V++
Sbjct: 525 ELTAQTKRAHDEADQLQKQLAESTKLHQELTNQFNKYQAQRDRLTEQAQEKANRVVEEAK 584
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQ 765
A + +H+ +Q+ A + L+ + + + + +L KV
Sbjct: 585 QQADKIIADLHQKQKQIGKVAIKENELIDAKGELNKLEVAPNLKKNKV------------ 632
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEI 825
T +K +H + GD V V S+G++GT+I E +
Sbjct: 633 -LTKEKEKHNF----------------------HTGDDVLVKSYGQQGTLIGKEKNG-TW 668
Query: 826 VVQVGNMKWIMKFTDI 841
VQ+G +K + DI
Sbjct: 669 DVQIGILKMKIDEADI 684
>gi|42518575|ref|NP_964505.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii NCC 533]
gi|81703880|sp|Q74KU8.1|MUTS2_LACJO RecName: Full=MutS2 protein
gi|41582860|gb|AAS08471.1| DNA mismatch repair protein MutS [Lactobacillus johnsonii NCC 533]
Length = 788
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 222/793 (27%), Positives = 377/793 (47%), Gaps = 131/793 (16%)
Query: 57 LEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDL 116
LE++++ +S A T +E LT + S N DE +I+ + S L +
Sbjct: 9 LEYNRIIKQLSDLAITVPAKEQALTLMPSSN---------FDEVKKSIDQTRVLSNVLRV 59
Query: 117 TG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
G D V+++++ ++ + L E + +L ++ +S A E+ ++ R
Sbjct: 60 KGPMPITDFKDVRASLKRLKVKANLNGEELGNIFLILSLAK--DVSQFTADLEEREIDTR 117
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
P+ + + L + L K + Q ++ DG++KD+AS L Q R +Q E + M+
Sbjct: 118 --PIEKTLKNLAIPEDLFKKLNQAIEYDGTVKDTASSKLMQLRHDIQSNETDIKNHMNDY 175
Query: 233 IRNENNESLFLEVSSIH-GRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
I ++ + L + +I GR + + + F G++ S+SG +EP + + LN+
Sbjct: 176 ISGKHTQYLSENIVTIRDGRYVLPVKQEYKNKFGGVVHDQSASGQTLFVEPQAVLVLNNR 235
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
Q A + +L+ L+E + EI+ + + QLD ++A++ + + T P
Sbjct: 236 QQNLMAQERQEIHRILIELSELAGMYQKEIKNNADALTQLDFLSAKSKLAKAMKATEP-- 293
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
L QD I L KA HPL+
Sbjct: 294 VLNQD--------------------HVIKLRKARHPLI---------------------- 311
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKT 469
P ++ VP +I + ++ITGPNTGGKT
Sbjct: 312 --------------------DPKKV----------VPNNIELGTSFDTMLITGPNTGGKT 341
Query: 470 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 529
I LKT+GL +MA++GL I + E +++ F+ ++ADIGDEQS+ QSLSTFS H+ QI I
Sbjct: 342 ITLKTLGLLQLMAQAGLFITAEEGSQLTVFNEIYADIGDEQSIEQSLSTFSSHMDQIIKI 401
Query: 530 ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589
+ T LVL+DE+GAGT+P EG +L +++L+ + + + I TTH+ ELK Y+
Sbjct: 402 MKDVTEDDLVLIDELGAGTDPEEGASLAIAILDDLRGAQAKIAI-TTHYPELKLYGYNRA 460
Query: 590 FFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINE 649
NA MEFD KL PTY++ G+PG+S+A IA +LG+ +VV AR L ++IN+
Sbjct: 461 RTTNASMEFDLKKLAPTYRLRIGIPGQSNAFAIAHQLGMNEVVVDKARSLMNDEDSDINK 520
Query: 650 VIIEMERF--KTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
+I ER +T+ E +HE L +N+ +++ T ++ L++ ++VQK +
Sbjct: 521 MI---ERLTEQTKAAEQLHET-----LKQNVDQSI--TLKRQLQNGLDWYNQQVQKQLEK 570
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
A K+ + L +A +++ +Q R A + KV + + L
Sbjct: 571 AQ------EKADEMLAKKRQKADKIINDLEEQRR--AGGQVRTNKVIEAKGALNKL---- 618
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
+ E+ A + V++ R KR +VGD V V S+G++G + K + + E V
Sbjct: 619 ---ERENQNLAQNKVLQ------REKRRHDVSVGDTVKVLSYGQQGVITK-KLADHEFEV 668
Query: 828 QVGNMKWIMKFTD 840
Q+G +K +K TD
Sbjct: 669 QIGILK--VKVTD 679
>gi|410459253|ref|ZP_11313005.1| recombination and DNA strand exchange inhibitor protein [Bacillus
azotoformans LMG 9581]
gi|409930446|gb|EKN67445.1| recombination and DNA strand exchange inhibitor protein [Bacillus
azotoformans LMG 9581]
Length = 785
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 222/800 (27%), Positives = 377/800 (47%), Gaps = 135/800 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
LR+LE++K+ ++ A +SLG+E T L S + +++ ++ +ET+ A ++ +
Sbjct: 6 LRILEFEKIREALMKHAASSLGKEKAETILPSFD--FEEVVKWQEETDEAAKVLRL-KGQ 62
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ L G+ V+ +++ + L +E L + + + ++ + A +++ +L I
Sbjct: 63 VPLGGI--FDVRPSLKRAQIGGDLSASELLDIASTIYGGRQIKNFIEAMVEDGVELPI-- 118
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
L+ I QL L + I +D+ G + D AS L+ R ++ E ++ + ++ +
Sbjct: 119 --LSSYIEQLTTLTDLERKIKNCIDDHGHVMDGASDKLRSIRQTLRSAESRIREKLENMT 176
Query: 234 RNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDE 289
R+ N + + + ++ + R I + S G ++ S+SG IEP + V LN+
Sbjct: 177 RSSNAQKMLSDAIITIRNDRFVIPVKQEYRSAYGGIVHDQSASGATLFIEPQAVVELNNT 236
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
LQ+ARA + E +L LT + D + + + + ++D + A+A++ + P +
Sbjct: 237 LQEARAKEKQEVERILHELTLFVAEDAESMLHNVKILTEIDFMFAKASFGQKIKASMPKM 296
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
RE I L KA HPL+
Sbjct: 297 ----------------------NREGRIRLFKARHPLI---------------------- 312
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKT 469
++ VP DI + +VITGPNTGGKT
Sbjct: 313 ------------------------------DIKQVVPNDIILGEDYSAIVITGPNTGGKT 342
Query: 470 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 529
+ LKT+GL +MA++GL I + + +++ F SVFADIGDEQS+ QSLSTFS H+ I I
Sbjct: 343 VTLKTLGLLTLMAQAGLQIPALDGSEMTVFSSVFADIGDEQSIEQSLSTFSSHMTNIVEI 402
Query: 530 ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589
+ Q + SLVL DE+GAGT+P EG AL +++L+ G+ + +ATTH+ ELK Y+
Sbjct: 403 LKQVDANSLVLFDELGAGTDPQEGAALAIAILDDVYNRGAKV-VATTHYPELKAYGYNRS 461
Query: 590 FFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINE 649
NA +EFD L PTY++L GVPGRS+A I++RLGL V++NA+ + ++
Sbjct: 462 GVINASVEFDVETLSPTYRLLLGVPGRSNAFEISKRLGLSQHVIENAKGYVSQETNKVEN 521
Query: 650 VIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR-------TRRKILEHCASQRFRKVQ 702
+I +E K Q E EA + +LH+ L + R KILE ++
Sbjct: 522 MIASLEESKKQAEEEWSEAEDIRKDAEHLHQELQKQIIAFYEERDKILEKAEEDAKEAIE 581
Query: 703 KI-SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLT 761
K DA AI R L ++++ +A+Q++ +H L
Sbjct: 582 KAKGDAEAIIRDL-----------------------RKMKFNAAQAV-------KEHELI 611
Query: 762 SNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPS 821
++ A + K I Q + K+ LP GD V V S ++G +++ + S
Sbjct: 612 EARKRL------EEAVPTLQKNKKIVQKQKAKQKLLP--GDEVKVVSLDQRGHIVE-QVS 662
Query: 822 KEEIVVQVGNMKWIMKFTDI 841
+ E VQ+G +K +K D+
Sbjct: 663 EGEFQVQIGILKMKVKEKDL 682
>gi|78185392|ref|YP_377827.1| MutS 2 protein [Synechococcus sp. CC9902]
gi|78169686|gb|ABB26783.1| MutS 2 protein [Synechococcus sp. CC9902]
Length = 814
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 217/633 (34%), Positives = 320/633 (50%), Gaps = 118/633 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGRE-ATLTQLWSINQTYQDSLRLLDET--NAAIEMQK 108
E+L +LEW +C +++FA T +G E A TQL Q+ ++L+ ET A ++
Sbjct: 26 ETLELLEWPVVCEHLATFASTRMGLESARATQL---PQSLAETLQRQAETVEMAVLDDLT 82
Query: 109 HGSCSL----DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIK 164
G S DL V L +K + AS E LAV L + L+ +
Sbjct: 83 EGGLSFRGVNDLRPVLLRCLKGGV-----ASG---EELLAVAGTLAAARKLRRQI----- 129
Query: 165 EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQV-VDEDGSIKDSASPALKQSRGQVQMLER 223
+D +L P+ +++ V ++ ++ ++E G + D ASP L R Q + +
Sbjct: 130 DDQELR----PVCTALIETMVTLPDLEQRLKFSLEEGGRVADRASPPLAGLRQQWNGVRQ 185
Query: 224 KLYQLMDMLIRNENNESLFLEVSSI---HGR--LCIRTGA-DQLSFKGLLLSSSSGIGSV 277
+ + L R + FL+ S I HGR L ++ GA Q+S + + SS+SG
Sbjct: 186 ERRDKLQELTRRYAS---FLQDSVIAQRHGRPVLAVKAGAVGQVSGQ-VHDSSASGNTVF 241
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNA--- 334
IEP S + + ++L A + K E+ VL L++ + D E++LN ++++ +
Sbjct: 242 IEPRSVLTMGNKLVDIEARIRKEEQRVLAELSDLVAQD----ERVLNSLVEILLALDLAL 297
Query: 335 -RATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQ 393
R Y G P++ +P E L HPLL+ QHK+
Sbjct: 298 ARGRYGRWLGAVPPHLL----------EDP----------EAPFLLRDLRHPLLIWQHKR 337
Query: 394 KTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIAR 453
+ SP VPI + ++
Sbjct: 338 SSG---------------------------------SPV------------VPISVDVSA 352
Query: 454 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 513
+ RV+ ITGPNTGGKT+ LK++GL +MA++G+ I S +PW V ADIGDEQSL
Sbjct: 353 QLRVVAITGPNTGGKTVSLKSLGLVALMARAGMLIPCSGRPSLPWCAQVLADIGDEQSLQ 412
Query: 514 QSLSTFSGHLKQIGNIISQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL 570
QSLSTFSGH+K+IG I+ S +LVLLDE+GAGT+P EGTAL +LL+A A+ +
Sbjct: 413 QSLSTFSGHIKRIGRILQALESGPVPALVLLDEVGAGTDPSEGTALATALLKALADR-AR 471
Query: 571 LTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL-P 629
LTIATTH GELK LKY++D FENA + F+ L PTY++LWG+PGRS+A+ IA RLGL
Sbjct: 472 LTIATTHFGELKALKYTDDRFENASVAFNAETLSPTYELLWGIPGRSNALAIATRLGLDA 531
Query: 630 GIVVQNARQLYGAASAEINEVI--IEMERFKTQ 660
G++ Q L AA E+N VI +E +R + Q
Sbjct: 532 GVLDQAQALLALAAEGEVNTVIQGLEEQRQRQQ 564
>gi|297544938|ref|YP_003677240.1| MutS2 family protein [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
gi|296842713|gb|ADH61229.1| MutS2 family protein [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
Length = 791
Score = 241 bits (616), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 199/680 (29%), Positives = 322/680 (47%), Gaps = 110/680 (16%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGS 111
+L+ LE+DK+ + S+ + LG++ + I + ++ R LD N AI + +G
Sbjct: 9 ALKSLEFDKIVEFIVSYCDSDLGKQKASDIV--IKKDIEEIERELDLLNEAIYFISSYGG 66
Query: 112 CSLDLTGVDLSLVKSAIREV--RRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
S + + K+ I V + V + + + LQ ++D
Sbjct: 67 ISFAFEDIRDYIKKAQIDSVLYNKELLKIKKFLKLVSQIKGYFKNLQ---------ESDR 117
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
++R + ++ + + L K I ++ + I D ASP LK R Q + K+ +
Sbjct: 118 FVRLKEYDKKVLPI---KDLEKRIENIIISEDEIADDASPLLKSLRRQKSAINEKIRATL 174
Query: 230 DMLIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLN 287
+ +I E ++ GR + + S FKG++ SSSG IEP+ V LN
Sbjct: 175 NSIISTRQKELQEPIITVRQGRYVVPVKQEYRSTFKGIVHDQSSSGATLFIEPMQVVDLN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+EL+Q + + +L L+++++ + + + +LD A+A
Sbjct: 235 NELRQVELKERQEIQRILFELSQEVKKYAQALFNDIEIVSELDFTFAKA----------- 283
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
K SL + V ++++ I L KA HPL+ Q+A
Sbjct: 284 --------KYSLKLKAVRPELNTM---GYINLKKARHPLI-------NQEAV-------- 317
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
VPIDI+I + LVITGPNTGG
Sbjct: 318 -------------------------------------VPIDIYIGDQFNTLVITGPNTGG 340
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKTVGL +MA +GL+I + E ++V F+ +F DIGDEQS+ QSLSTFS H+ I
Sbjct: 341 KTVTLKTVGLLTIMAMAGLNIPAEEGSQVSIFEEIFVDIGDEQSIEQSLSTFSSHMTNII 400
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
+++ + L LLDE+GAGT+P+EG AL MS+L+ + G+ TIATTH+ ELK
Sbjct: 401 SMLQKVNKNCLALLDELGAGTDPVEGAALAMSILDTLHKIGA-KTIATTHYSELKQYALK 459
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
ENA +EFD LKPTYK++ G+PG+S+A IA+RLGLP ++++AR+ + +
Sbjct: 460 TAGVENASVEFDVETLKPTYKLIIGLPGKSNAFEIAKRLGLPRQIIEDARKYISGEALKF 519
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLH----------KNLLRTRRKILEHCASQR 697
++I ++E + + + HE L +N+ K L R KIL+ A +R
Sbjct: 520 EDIIADVENKRRELEKANHEV---AFLRKNVEILKEELEKEKKRLQNERDKILKE-AKER 575
Query: 698 FRKVQKISDAAAIARSLVHK 717
RK+ + +A A ++ K
Sbjct: 576 ARKI--VQEAKFTAEGIIKK 593
>gi|254557071|ref|YP_003063488.1| DNA mismatch repair protein MutS2 [Lactobacillus plantarum JDM1]
gi|254045998|gb|ACT62791.1| DNA mismatch repair protein MutS2 [Lactobacillus plantarum JDM1]
Length = 787
Score = 241 bits (616), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 234/803 (29%), Positives = 384/803 (47%), Gaps = 142/803 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE+ ++ ++ + ++ G++A L +L + + D R LDETN
Sbjct: 6 LNTLEYQQVKQQLAPYLVSATGQQA-LNELHPMT-SVADIQRALDETN------------ 51
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPN-EALAVVALLQFSETLQLS--LR---------A 161
G ++ +K I V R + ++P+ + LA+ A L SE Q+ LR A
Sbjct: 52 ---DGAEVYRLKGGI-PVARLADIKPHMKRLAIGATLNGSELGQVGRVLRTTRAITRFFA 107
Query: 162 AIKEDA-DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQM 220
+ EDA + IR L + +L + K + ++ DG I D ASP L + R ++
Sbjct: 108 ELLEDAPENDIRH--LFDEVAELVTLPDVTKRLATAIEGDGHITDEASPELSRIRSNIRR 165
Query: 221 LERKLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSV 277
E ++ M R + + L + +I + R I A+ S F G++ S+SG
Sbjct: 166 TETEIRNQMGHYTRGHDAKYLSDPIITIRNDRYVIPVKAENRSRFGGIVHDQSASGQTLF 225
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
IEP + + +ND L+Q + + + E+ +L L+ + DEI + D +NA+A
Sbjct: 226 IEPQAVMAMNDRLRQNQVAEKQEEQRILEELSNLIAPYQDEIINNAAILGHFDFINAKAR 285
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
Y+ T P + PQ+ +YL +A HPL
Sbjct: 286 YAHDMKATEPAVS-PQN---------------------EVYLRQARHPL----------- 312
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
+ P ++ V DI + +
Sbjct: 313 -------------------------------IDPRKV----------VANDISLGTDYQA 331
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
+VITGPNTGGKTI LKT+GL +MA+SGL I ++V ++ +FADIGDEQS+ Q+LS
Sbjct: 332 MVITGPNTGGKTITLKTLGLLQLMAQSGLFIPVEAGSRVGVYNEIFADIGDEQSIEQNLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H++ I + ++Q + SLVL+DE+GAGT+P EG AL +++L+A G+ + +ATTH
Sbjct: 392 TFSSHMENIESFLAQIDAHSLVLVDELGAGTDPQEGAALAIAILDAIGAKGTQV-VATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK ++ NA MEFDE LKPTY++L G+PGRS+A++IA+RLG+P +V AR
Sbjct: 451 YPELKAYGFNRPDTINASMEFDEETLKPTYRLLVGIPGRSNALDIAQRLGIPQTIVDQAR 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
L S ++N +I ++ + Q + + + S LH+ L E A Q+
Sbjct: 511 SLTDTDSQDLNAMIADLVTKRKQVEDEQLHLKTQVADSEKLHRQLKS------EFNAYQQ 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
RK Q I DA A ++V + S ++A +++ ++ S + ++ ++ +
Sbjct: 565 -RKDQLIEDAKVQANTIVEQ-------SKTKADAIISDLRKKQLASGTATVKENELIDAK 616
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L + QQ P + V++ R K + GD V V S+G++G +++
Sbjct: 617 GALNALEQQ--------PKLKKNRVLR------RAKAQHDFHEGDDVLVKSYGQRGVLMR 662
Query: 818 VEPSKEEIVVQVGNMKWIMKFTD 840
+ K E VQ+G +K MK +D
Sbjct: 663 -QMGKHEWEVQLGILK--MKISD 682
>gi|418275797|ref|ZP_12891120.1| DNA mismatch repair protein MutS2 [Lactobacillus plantarum subsp.
plantarum NC8]
gi|376009348|gb|EHS82677.1| DNA mismatch repair protein MutS2 [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 787
Score = 241 bits (616), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 236/803 (29%), Positives = 386/803 (48%), Gaps = 142/803 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE+ ++ ++ + ++ G++A L +L + + D R LDETN
Sbjct: 6 LNTLEYQQVKQQLAPYLVSATGQQA-LNELHPMT-SVADIQRALDETN------------ 51
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPN-EALAVVALLQFSETLQLS--LR---------A 161
G ++ +K I V R + ++P+ + LA+ A L SE Q+ LR A
Sbjct: 52 ---DGAEVYRLKGGI-PVARLADIKPHMKRLAIGATLNGSELGQVGRVLRTTRAITRFFA 107
Query: 162 AIKEDA-DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQM 220
+ EDA + IR L + +L + K + ++ DG I D ASP L + R ++
Sbjct: 108 ELLEDAPENDIRH--LFDEVAELVTLPDVTKRLATAIEGDGHITDEASPELSRIRSNIRR 165
Query: 221 LERKLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSV 277
E ++ M R + + L + +I + R I A+ S F G++ S+SG
Sbjct: 166 TETEIRNQMGHYTRGHDAKYLSDPIITIRNDRYVIPVKAENRSRFGGIVHDQSASGQTFF 225
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
IEP + + +ND L+Q + + + E+ +L L+ + DEI + D +NA+A
Sbjct: 226 IEPQAVMAMNDRLRQNQVAEKQEEQRILEELSNLIAPYQDEIINNAAILGHFDFINAKAR 285
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
Y+ DMK + EP S + +YL +A HPL
Sbjct: 286 YA-------------HDMKAT---EPAVSPKNE------VYLRQARHPL----------- 312
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
+ P ++ V DI + +
Sbjct: 313 -------------------------------IDPRKV----------VANDISLGTDYQA 331
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
+VITGPNTGGKTI LKT+GL +MA+SGL I ++V ++ +FADIGDEQS+ Q+LS
Sbjct: 332 MVITGPNTGGKTITLKTLGLLQLMAQSGLFIPVEAGSRVGVYNEIFADIGDEQSIEQNLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H++ I + ++Q + SLVL+DE+GAGT+P EG AL +++L+A G+ + +ATTH
Sbjct: 392 TFSSHMENIESFLAQIDAHSLVLVDELGAGTDPQEGAALAIAILDAIGAKGTQV-VATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK ++ NA MEFDE LKPTY++L G+PGRS+A++IA+RLG+P +V AR
Sbjct: 451 YPELKAYGFNRPDTINASMEFDEETLKPTYRLLVGIPGRSNALDIAQRLGIPQAIVDQAR 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
L S ++N +I ++ + Q + + + S LH+ L E A Q+
Sbjct: 511 SLTDTDSQDLNAMIADLVTKRKQVEDEQLHLKTQVADSEKLHRQLKS------EFNAYQQ 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
RK Q I DA A ++V + S ++A +++ ++ S + ++ ++ +
Sbjct: 565 -RKDQLIEDAKVQANTIVEQ-------SKTKADAIISDLRKKQLASGTATVKENELIDAK 616
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L + QQ P + V++ R K + GD V V S+G++G +++
Sbjct: 617 GALNALEQQ--------PKLKKNRVLR------RAKAQHDFHEGDDVLVKSYGQRGVLMR 662
Query: 818 VEPSKEEIVVQVGNMKWIMKFTD 840
+ K E VQ+G +K MK +D
Sbjct: 663 -QMGKHEWEVQLGILK--MKISD 682
>gi|380033002|ref|YP_004889993.1| DNA mismatch repair protein MutS2 [Lactobacillus plantarum WCFS1]
gi|81733674|sp|Q88V16.1|MUTS2_LACPL RecName: Full=MutS2 protein
gi|342242245|emb|CCC79479.1| DNA mismatch repair protein MutS2 [Lactobacillus plantarum WCFS1]
Length = 787
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 234/803 (29%), Positives = 384/803 (47%), Gaps = 142/803 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE+ ++ ++ + ++ G++A L +L + + D R LDETN
Sbjct: 6 LNTLEYQQVKQQLAPYLVSATGQQA-LNELHPMT-SVADIQRALDETN------------ 51
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPN-EALAVVALLQFSETLQLS--LR---------A 161
G ++ +K I V R + ++P+ + LA+ A L SE Q+ LR A
Sbjct: 52 ---DGAEVYRLKGGI-PVARLADIKPHMKRLAIGATLNGSELGQVGRVLRTTRAITRFFA 107
Query: 162 AIKEDA-DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQM 220
+ EDA + IR L + +L + K + ++ DG I D ASP L + R ++
Sbjct: 108 ELLEDAPENDIRH--LFDEVAELVTLPDVTKRLATAIEGDGHITDEASPELSRIRSNIRR 165
Query: 221 LERKLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSV 277
E ++ M R + + L + +I + R I A+ S F G++ S+SG
Sbjct: 166 TETEIRNQMGHYTRGHDAKYLSDPIITIRNDRYVIPVKAENRSRFGGIVHDQSASGQTLF 225
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
IEP + + +ND L+Q + + + E+ +L L+ + DEI + D +NA+A
Sbjct: 226 IEPQAVMAMNDRLRQNQVAEKQEEQRILEELSNLIAPYQDEIINNAAILGHFDFINAKAR 285
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
Y+ T P + PQ+ +YL +A HPL
Sbjct: 286 YAHDMKATEPAVS-PQN---------------------EVYLRQARHPL----------- 312
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
+ P ++ V DI + +
Sbjct: 313 -------------------------------IDPRKV----------VANDISLGTDYQA 331
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
+VITGPNTGGKTI LKT+GL +MA+SGL I ++V ++ +FADIGDEQS+ Q+LS
Sbjct: 332 MVITGPNTGGKTITLKTLGLLQLMAQSGLFIPVEAGSRVGVYNEIFADIGDEQSIEQNLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H++ I + ++Q + SLVL+DE+GAGT+P EG AL +++L+A G+ + +ATTH
Sbjct: 392 TFSSHMENIESFLAQIDAHSLVLVDELGAGTDPQEGAALAIAILDAIGAKGTQV-VATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK ++ NA MEFDE LKPTY++L G+PGRS+A++IA+RLG+P +V AR
Sbjct: 451 YPELKAYGFNRPDTINASMEFDEETLKPTYRLLVGIPGRSNALDIAQRLGIPQAIVDQAR 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
L S ++N +I ++ + Q + + + S LH+ L E A Q+
Sbjct: 511 SLTDTDSQDLNAMIADLVTKRKQVEDEQLHLKTQVADSEKLHRQLKS------EFNAYQQ 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
RK Q I DA A ++V + S ++A +++ ++ S + ++ ++ +
Sbjct: 565 -RKDQLIEDAKVQANTIVEQ-------SKTKADAIISDLRKKQLASGTATVKENELIDAK 616
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L + QQ P + V++ R K + GD V V S+G++G +++
Sbjct: 617 GALNALEQQ--------PKLKKNRVLR------RAKAQHDFHEGDDVLVKSYGQRGVLMR 662
Query: 818 VEPSKEEIVVQVGNMKWIMKFTD 840
+ K E VQ+G +K MK +D
Sbjct: 663 -QMGKHEWEVQLGILK--MKISD 682
>gi|333978122|ref|YP_004516067.1| MutS2 protein [Desulfotomaculum kuznetsovii DSM 6115]
gi|333821603|gb|AEG14266.1| MutS2 protein [Desulfotomaculum kuznetsovii DSM 6115]
Length = 785
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 215/397 (54%), Gaps = 30/397 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI I + + LVITGPNTGGKT+ LKTVGL +MA+SGLHI + E +++ FD VFA
Sbjct: 314 VPISIHVGYQFDTLVITGPNTGGKTVTLKTVGLLALMAQSGLHIPAGEGSELGVFDEVFA 373
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS HL I I++Q SLVLLDE+GAGT+P EG AL ++LE
Sbjct: 374 DIGDEQSIEQSLSTFSSHLTNIVQILNQVGQGSLVLLDELGAGTDPAEGAALAQAILERL 433
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
E G+ T+ATTH+ ELK Y+ + ENA +EFD + LKPTY++L G PG S+A IA
Sbjct: 434 HEMGA-KTVATTHYSELKNFAYARERVENASVEFDAITLKPTYRLLIGKPGSSNAFEIAR 492
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +V+ AR A ++ +++ ++ER + Q + EAR + L +
Sbjct: 493 RLGLAPDLVERARSFMTAEQVQVADLMQQLERARQQAERELEEARRMRQEAEGLKERYQA 552
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
R ++ R+ ++ A AR LV ++ Q+ + + R+ + A ++R A
Sbjct: 553 LRDELA-------ARRESILARAREEARQLVKRARQESEEAIRELRARLADEAARVREEA 605
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
+ + V+ Q P SV +VG V
Sbjct: 606 -----IREAREKLAVMQERLQVGAPRPKPEPGVIPESV----------------SVGQTV 644
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ F ++GTV+ + P E+ VQVG +K + ++
Sbjct: 645 FLPRFNQRGTVVAL-PEAGEVQVQVGMIKINVPLAEL 680
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 137/309 (44%), Gaps = 30/309 (9%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
+L+ LE+DK+ ++ + + LGRE SLR + + A M +
Sbjct: 5 TLKRLEYDKVLEHLARYTISPLGRERVF------------SLRPVTDRQAIHTMLAQTTQ 52
Query: 113 SLDL----TGVDLSL---VKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKE 165
+ +L G D ++ ++ V R + L P E LL+ +TL + R K
Sbjct: 53 ARELLRLEPGADFGGWHDIRQYLQRVVRGAVLEPQE------LLETGQTLG-ACRRIRKF 105
Query: 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
A+ R+ L ++ + + L K I + + G I D AS AL R ++Q ++++
Sbjct: 106 FAERPGRYPLLEEIALTIGNFTELEKKIARAILPGGEIADDASTALSTIRRRLQRAQQQV 165
Query: 226 YQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPL 281
+ ++ ++R+ + + V+ GR + + + G++ S+SG IEP+
Sbjct: 166 KEQLESIVRSPAYQKYLQDPIVTIREGRYVVPVKQEYRAQVPGIVHDQSASGATLFIEPM 225
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ V N+E+++ + + + +L L+ + +E+ L + QLD + ARA YS
Sbjct: 226 AVVESNNEVRRLQVAEKQEIARILGELSGAVAARGEELALSLEALGQLDFILARARYSEH 285
Query: 342 FGGTSPNIF 350
P +
Sbjct: 286 LDAVEPRLL 294
>gi|345861074|ref|ZP_08813351.1| mutS2 family protein [Desulfosporosinus sp. OT]
gi|344325837|gb|EGW37338.1| mutS2 family protein [Desulfosporosinus sp. OT]
Length = 787
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 189/674 (28%), Positives = 312/674 (46%), Gaps = 112/674 (16%)
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
F L ++++ + + L I + + EDG + DSASP L R + L+ ++ + ++
Sbjct: 115 FPGLWEIVLPIEPQKDLEDEISRCIAEDGKVADSASPELADLRRALNRLQNRIRESLEAT 174
Query: 233 IRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+RN + + + ++ R + + + +F G++ S+SG IEP+ V L +
Sbjct: 175 LRNSAYQKMLQDPIITQRSDRYVLPIKQEYRTAFPGIVHDQSASGATLFIEPMPVVHLGN 234
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
EL++ + +L L+ +++ +D + ++ + +LD+V A+A S++ +P
Sbjct: 235 ELREVILKEQREVMRILQMLSSQIEARVDAVAELHEALAKLDLVVAKAQLSVAMNAGAPE 294
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
+ Q MK L +A HPL+L
Sbjct: 295 LVKGQQMK----------------------LVQARHPLILG------------------- 313
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
+V L L + D + +TGPNTGGK
Sbjct: 314 --------------------------KVVPLSLELGIDFDTLV--------VTGPNTGGK 339
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LK VGL M +SGLHI + +++ F +FADIGDEQS+ QSLSTFSGH+K I
Sbjct: 340 TVALKVVGLMAAMTQSGLHIPAENDSRMGVFTQIFADIGDEQSVEQSLSTFSGHMKNIVE 399
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
II +S +SLVLLDE+GAGT+P EG AL M +L E G T++TTH+G LKT Y
Sbjct: 400 IIDRSDERSLVLLDEVGAGTDPTEGAALAMGILAELHERGC-RTVSTTHYGALKTFAYET 458
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
+NA +EFD L+PTY++L G+PG+S+A IA RLGL V++ A N
Sbjct: 459 PRVKNASVEFDTETLRPTYRLLIGIPGKSNAFTIAGRLGLSEQVLEKA-----------N 507
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+ E E +E++ E + L K ++T R+ +E + K + +
Sbjct: 508 TFVTEREMQVADLIENLGETHREI----ELEKQKVKTGRQAVERQSKALEEKSILLDEEY 563
Query: 709 AIARSLVHKSAQQLCPSA-SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
+ S+ A +L A +A +++ + L+ Q K + H +++ +
Sbjct: 564 ELLLSMAKDEASELVRQARREADAIIEELKAALKKENKQQQDIEKARQGFHRISARLDKG 623
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
KV+ P S V IK +G V ++ +KG VIK+ + E++V
Sbjct: 624 R--KVQRP--GSGLVADQIK------------LGQTVQMTKLRQKGQVIKLPNANGEVLV 667
Query: 828 QVGNMKWIMKFTDI 841
Q G MK ++ ++
Sbjct: 668 QAGIMKVMVPLVEL 681
>gi|334127861|ref|ZP_08501763.1| DNA mismatch repair protein MutS [Centipeda periodontii DSM 2778]
gi|333388582|gb|EGK59756.1| DNA mismatch repair protein MutS [Centipeda periodontii DSM 2778]
Length = 784
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 209/793 (26%), Positives = 372/793 (46%), Gaps = 127/793 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
+S +VLE++K+ + +++FA T G+E L S + Y +RL ET A+++ + +
Sbjct: 4 DSFKVLEYEKITNWLATFASTIRGKELCRNALPSGD--YDAVVRLHQETAEAVQVLQMQT 61
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
G+ DL + +++ S L +E +V++ + ++ R DL
Sbjct: 62 PPFG--GIYDL---RQIMKKASMGSVLEVDELRSVMSTMAGMRNVKYFFR-------DLD 109
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I L + L + + + + +DE G+ +D ASP L++ ++Q + + +
Sbjct: 110 IDVSILKEQARPLEILGMVERHLKDAIDEHGNFRDDASPELRRITRELQTAQARAKDRLS 169
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
++ + N+ F E V+ R I + + F G++ S+SG +EPL+ V L
Sbjct: 170 AILHDAANQKYFQEAIVTVRDERYVIPVKQEYRNYFPGVIHDQSASGATLFVEPLATVEL 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ ++Q + T+ + +L LT ++ + +E+ + +D++ ARA +
Sbjct: 230 NNTVRQMELARTQEIQRILRKLTAEIAQNARILEENCAILSTIDLIFARARLAREMEAYP 289
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + R ++L +A HPL
Sbjct: 290 PTL----------------------NRNGRVHLKRARHPL-------------------- 307
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
L R K+ VPIDI + + VL+ITGPNTG
Sbjct: 308 --LPRDKV------------------------------VPIDIELGKSFSVLLITGPNTG 335
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ +KT+GL ++A++G + ++ +++P + +++ADIGDEQS+ QSLSTFS H + I
Sbjct: 336 GKTVSMKTLGLLALLAQTGCFLPTAPDSEIPVYRNIYADIGDEQSIEQSLSTFSAHTRNI 395
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
II ++ L+LLDE+GAGT+P EG AL S++E F ++ T+ATTH+ LKT Y
Sbjct: 396 VRIIDKAEQGDLILLDEVGAGTDPDEGAALARSIIEHFLRR-NICTVATTHYAALKTFAY 454
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ ENA +EFD L+PTY++L G+PG S+A +I+ +LGL +V A
Sbjct: 455 TQTGVENASVEFDLKTLRPTYRLLIGIPGASNAFSISRQLGLSPDIVARAEIYISEEHTH 514
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQ-RFRKVQKIS 705
V+ E+E+ K + EAR+ ++ ++ L R L C + F K+++
Sbjct: 515 FENVVNELEQEKKDY-----EARNHMLHAKEAE---LTAREARL--CTERDTFTKMRQ-- 562
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQ 765
L+HK+ C A+ + + A++ S + V + + +
Sbjct: 563 -------ELLHKA----CEEANNIVRMARRSAEETIKSLKEQFDDHGVKERRKAIQEARD 611
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEI 825
+ VE A + SV K ++ GD+V++ S ++GTV+ ++ +E+
Sbjct: 612 RLNEAYVEGDAQRNESVGKPVRAGE-------VQSGDIVYIPSLAQEGTVLAIQ--GKEL 662
Query: 826 VVQVGNMKWIMKF 838
VQVG ++ I+K
Sbjct: 663 TVQVGGLRTIVKM 675
>gi|402303647|ref|ZP_10822737.1| MutS2 family protein [Selenomonas sp. FOBRC9]
gi|400378042|gb|EJP30906.1| MutS2 family protein [Selenomonas sp. FOBRC9]
Length = 785
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 215/800 (26%), Positives = 372/800 (46%), Gaps = 130/800 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHG 110
E+ +VLE++K+ +S FA + G+E T + + + LRL ET A+ +Q
Sbjct: 4 EAFKVLEYEKIKDRLSLFASSMRGKEVCRTMTPASD--FDTVLRLHAETAEAVSVLQMQA 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
+ + +L K+ + S L E +++ +Q ++ R DADL
Sbjct: 62 PPFGGIYDLRHTLQKATL-----GSTLEVEELREIMSTMQGMRNVKYFFR-----DADLS 111
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+ L + +++ + L K + +DE G+++D ASP L++ ++ + ++ + +
Sbjct: 112 LPL--LKEKGVRIEILGMLEKHLQNTIDEHGNLRDDASPELRRVTREMLSAQNRVKERLS 169
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
++ + + F E V+ R I + + F G++ S+SG +EPL+ V L
Sbjct: 170 TILHDAAYQKCFQEAIVTVRAERYVIPVKQEYRAQFPGVIHDRSASGATLFVEPLATVEL 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ ++Q + + +L L++++ D + + + +LD++ ARA S +
Sbjct: 230 NNTVRQMELAREQEIRRILQQLSQEIARAADILSENCTILAELDLIFARAGLSRDMEAYA 289
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P R + L +A HPLL
Sbjct: 290 PTF----------------------NRAGYVRLQRARHPLL------------------- 308
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
P + V PIDI + R VL+ITGPNTG
Sbjct: 309 ------------------------PKDRVV---------PIDIELGRGFSVLLITGPNTG 335
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ +KT+G+ +MA+SG + ++ A++P + S++ADIGDEQS+ QSLSTFS H K I
Sbjct: 336 GKTVSMKTLGILALMAQSGCFLPTASGAELPVYGSIYADIGDEQSIEQSLSTFSAHTKNI 395
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ ++ S LVLLDE+GAGT+P EG AL S++E + + IATTH+ LKT Y
Sbjct: 396 VRILQKAESNDLVLLDEVGAGTDPDEGAALARSIIEHLLQR-RISVIATTHYAALKTYAY 454
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
NA +EFD L+PTY++L G PG S+A +I+ RLGL +V A++
Sbjct: 455 GRQGVMNASVEFDTATLRPTYRLLIGTPGASNAFSISRRLGLADAIVARAQRYIDEDHVR 514
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
V+ E+E+ K V+E R + LRTR + + Q + K
Sbjct: 515 FETVVNELEKEK-----RVYETR----------QTELRTRAQKISAMEEQLRTERDKFIR 559
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A R L+HK+ ++ +AR + ++L+ Q V + + + ++
Sbjct: 560 A---HRKLLHKAREEANGIVREARRSAEETIKKLK----QQFDDHGVKERRKAIQEARER 612
Query: 767 TTVDKV--EHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEE 824
T + HP+ +K +++ E+ GD+VH++ ++GTV+ V+ +E
Sbjct: 613 LTEAYMPQRHPSA--------VKVGQKIRAGEI-EPGDIVHITRLAQEGTVLAVQ--GKE 661
Query: 825 IVVQVGNMKWIMKFTDIVTY 844
+ VQ+G ++ ++K TD T+
Sbjct: 662 LTVQIGALRTVVK-TDECTF 680
>gi|399924139|ref|ZP_10781497.1| MutS2 family protein [Peptoniphilus rhinitidis 1-13]
Length = 790
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 221/797 (27%), Positives = 369/797 (46%), Gaps = 144/797 (18%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM-QKHGSCS 113
+ LE D++ + + A S+ E + I+ + + L+ETN A+++ G
Sbjct: 10 KTLELDRVLGELKNLASASITSE--YIESIEISTDFDEIKNRLNETNEALKLILSKGEPQ 67
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDA--DL 169
L VD +K+ I+ V +L+ ALLQ S+ L++S L+ +K+++ D
Sbjct: 68 L-FGIVD---IKNIIKRVEIGG------SLSASALLQVSDFLRVSRGLKTYLKKESNSDE 117
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I+ + ++I L+ + L I + + I D AS L + R + + + +
Sbjct: 118 SIKLNYIDKLIEDLYTEKKLEDEINSKIISEEEIADDASRELLRIRRGIADKKNSIKNKL 177
Query: 230 DMLIRNENNESLFLE---VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAV 284
+ ++ NN++ +L+ V+ GR + + S +GL+ SSSG + IEP+S V
Sbjct: 178 NGIL---NNQANYLQDAIVTLRDGRYVVPVKIENKSRVRGLVHDISSSGQTAYIEPMSVV 234
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
N+EL++ E +L L+E + + I+ + +I+LD + A+A + +
Sbjct: 235 EANNELKELYIKENAEIEKILRELSELVAESSEYIKSNQDKLIELDFIFAKARLGIKYHA 294
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
P I ++ I L +AYHP L
Sbjct: 295 NMPKI----------------------NKDGRINLIRAYHPFL----------------- 315
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
RK+ VPIDI + L+ITGPN
Sbjct: 316 ------DRKI-----------------------------AVPIDINLGIDFSSLIITGPN 340
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKTVGL +M + GL I E +++ F+ VFADIGDEQS+ QSLSTFS H+
Sbjct: 341 TGGKTVSLKTVGLLSLMTQYGLLIPCEESSEIAIFEKVFADIGDEQSIEQSLSTFSSHMV 400
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I + T SLVL DE+GAGT+P EG AL +++E+ + ++ I+TTH+ +LK
Sbjct: 401 NIVYTLKNVTKNSLVLFDELGAGTDPTEGAALARAIMESMLKR-NIRCISTTHYNQLKVF 459
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
+ D NA MEFD L PTY++L GVPG+S+A I+ RLGLP +++ +++L + +
Sbjct: 460 ALTTDGVANASMEFDVDSLSPTYRLLIGVPGKSNAFEISRRLGLPNEIIEESKKLLSSEN 519
Query: 645 AEINEVIIEMERFKTQFLEHVH----EARHFLMLSRNLH---KNLLRTRRKILEHCASQR 697
E +V+ +++ +T+ E+ E R + ++ L +NL R KILE +
Sbjct: 520 IEFEDVLQSIDKDRTKIREYKEELEREKRDLEIENKKLEGKIRNLEDQREKILEKSREEA 579
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
R + + I S ++++ + S K+ Q+ + +SL ++
Sbjct: 580 KRILLNAKENVDIILSEINEAKDNINSENS-------KKIQEAQDLLRESLKNSR----- 627
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
N + + K +P +++IK VGD V +S G TVI+
Sbjct: 628 -----NNSELEIKKAVNP-------IREIK------------VGDKVR-TSLGNVATVIE 662
Query: 818 VEPSKEEIVVQVGNMKW 834
+ SK ++VQ G MK
Sbjct: 663 LPDSKGNVLVQSGIMKM 679
>gi|300768029|ref|ZP_07077935.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308181065|ref|YP_003925193.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|300494378|gb|EFK29540.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308046556|gb|ADN99099.1| DNA mismatch repair protein MutS [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 787
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 236/803 (29%), Positives = 386/803 (48%), Gaps = 142/803 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE+ ++ ++ + ++ G++A L +L + + D R LDETN
Sbjct: 6 LNTLEYQQVKQQLAPYLVSATGQQA-LNELHPMT-SVADIQRALDETN------------ 51
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPN-EALAVVALLQFSETLQLS--LR---------A 161
G ++ +K I V R + ++P+ + LA+ A L SE Q+ LR A
Sbjct: 52 ---DGAEVYRLKGGI-PVARLADIKPHMKRLAIGATLNGSELGQVGRVLRTTRAITRFFA 107
Query: 162 AIKEDA-DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQM 220
+ EDA + IR L + +L + K + ++ DG I D ASP L + R ++
Sbjct: 108 ELLEDAPENDIRH--LFDEVAELVTLPDVTKRLATAIEGDGHITDEASPELSRIRSNIRR 165
Query: 221 LERKLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSV 277
E ++ M R + + L + +I + R I A+ S F G++ S+SG
Sbjct: 166 TETEIRNQMGHYTRGHDAKYLSDPIITIRNDRYVIPVKAENRSRFGGIVHDQSASGQTLF 225
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
IEP + + +ND L+Q + + + E+ +L L+ + DEI + D +NA+A
Sbjct: 226 IEPQAVMAMNDRLRQNQVAEKQEEQRILEELSNLIAPYQDEIINNAAILGHFDFINAKAR 285
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
Y+ DMK + EP S + +YL +A HPL
Sbjct: 286 YA-------------HDMKAT---EPAVSPKNE------VYLRQARHPL----------- 312
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
+ P ++ V DI + +
Sbjct: 313 -------------------------------IDPRKV----------VANDISLGTDYQA 331
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
+VITGPNTGGKTI LKT+GL +MA+SGL I ++V ++ +FADIGDEQS+ Q+LS
Sbjct: 332 MVITGPNTGGKTITLKTLGLLQLMAQSGLFIPVEAGSRVGVYNEIFADIGDEQSIEQNLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H++ I + ++Q + SLVL+DE+GAGT+P EG AL +++L+A G+ + +ATTH
Sbjct: 392 TFSSHMENIESFLAQIDAHSLVLVDELGAGTDPQEGAALAIAILDAIGAKGTQV-VATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK ++ NA MEFDE LKPTY++L G+PGRS+A++IA+RLG+P +V AR
Sbjct: 451 YPELKAYGFNRPDTINASMEFDEETLKPTYRLLVGIPGRSNALDIAQRLGIPQAIVDQAR 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
L S ++N +I ++ + Q + + + S LH+ L E A Q+
Sbjct: 511 SLTDTDSQDLNAMIADLVTKRKQVEDEQLHLKTQVADSEKLHRQLKS------EFNAYQQ 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
RK Q I DA A ++V + S ++A +++ ++ S + ++ ++ +
Sbjct: 565 -RKDQLIEDAKVQANTIVEQ-------SKTKADAIISDLRKKQLASGTATVKENELIDAK 616
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L + QQ P + V++ R K + GD V V S+G++G +++
Sbjct: 617 GALNALEQQ--------PKLKKNRVLR------RAKAQHDFHEGDDVLVKSYGQRGVLMR 662
Query: 818 VEPSKEEIVVQVGNMKWIMKFTD 840
+ K E VQ+G +K MK +D
Sbjct: 663 -QMGKHEWEVQLGILK--MKISD 682
>gi|268318986|ref|YP_003292642.1| MutS2 protein [Lactobacillus johnsonii FI9785]
gi|262397361|emb|CAX66375.1| MutS2 protein [Lactobacillus johnsonii FI9785]
Length = 788
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 221/793 (27%), Positives = 379/793 (47%), Gaps = 131/793 (16%)
Query: 57 LEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDL 116
LE++++ +S A T+ +E LT + S N DE +I+ + S L +
Sbjct: 9 LEYNRIIKQLSDLAITAPAKEQALTLMPSSN---------FDEVKKSIDQTRVLSNILRV 59
Query: 117 TG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
G D V+++++ ++ + L E + +L ++ +S A E+ ++ R
Sbjct: 60 KGPMPITDFKDVRASLKRLKVKANLNGEELGNIFLILSLAK--DVSQFTADLEEREIDTR 117
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
P+ + + L ++ L K + Q ++ DG++KD+AS L Q R +Q E + M+
Sbjct: 118 --PIEKTLKNLAISEDLFKKLNQAIEYDGTVKDTASSKLMQLRHDIQSNETDIKNHMNDY 175
Query: 233 IRNENNESLFLEVSSIH-GRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
I ++ + L + +I GR + + + F G++ S+SG +EP + + LN+
Sbjct: 176 ISGKHTQYLSENIVTIRDGRYVLPVKQEYKNKFGGVVHDQSASGQTLFVEPQAVLVLNNR 235
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
Q A + +L+ L+E + EI+ + + QLD ++A++ + + T P
Sbjct: 236 QQNLMAQERQEIHRILIGLSELAGMYQKEIKNNADALTQLDFLSAKSKLAKAMKATEP-- 293
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
L H+ V I L KA HPL+
Sbjct: 294 --------VLNHDHV------------IKLRKARHPLI---------------------- 311
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKT 469
P ++ VP +I + ++ITGPNTGGKT
Sbjct: 312 --------------------DPKKV----------VPNNIELGTSFDTMLITGPNTGGKT 341
Query: 470 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 529
I LKT+GL +MA++GL I + E +++ F+ ++ADIGDEQS+ QSLSTFS H+ QI I
Sbjct: 342 ITLKTLGLLQLMAQAGLFITAEEGSQLTVFNEIYADIGDEQSIEQSLSTFSSHMDQIIKI 401
Query: 530 ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589
+ T LVL+DE+GAGT+P EG +L +++L+ + + + I TTH+ ELK Y+
Sbjct: 402 MKDVTEDDLVLIDELGAGTDPEEGASLAIAILDDLRGAQAKIAI-TTHYPELKLYGYNRA 460
Query: 590 FFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINE 649
NA MEFD KL PTY++ G+PG+S+A IA +LG+ VV AR L ++IN+
Sbjct: 461 RTTNASMEFDLKKLAPTYRLRIGIPGQSNAFAIAHQLGMNEAVVDKARSLMNDEDSDINK 520
Query: 650 VIIEMERF--KTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
+I ER +T+ E +HE L +N+ +++ T ++ L++ ++V+K +
Sbjct: 521 MI---ERLTEQTKAAEQLHET-----LKQNVDQSI--TLKRQLQNGLDWYNQQVRKQLEK 570
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
A K+ + L +A +++ +Q R A + KV + + L
Sbjct: 571 AQ------EKADEMLAKKRQKADKIINDLEEQRR--AGGQVRTNKVIEAKGALNKL---- 618
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
+ E+ A + V++ R KR +VGD V V S+G++G + K + + E V
Sbjct: 619 ---ERENQNLAQNKVLQ------REKRRHDVSVGDTVKVLSYGQQGVITK-KLADHEFEV 668
Query: 828 QVGNMKWIMKFTD 840
Q+G +K +K TD
Sbjct: 669 QIGILK--VKVTD 679
>gi|295107995|emb|CBL21948.1| MutS2 family protein [Ruminococcus obeum A2-162]
Length = 793
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 223/807 (27%), Positives = 362/807 (44%), Gaps = 143/807 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLD--ETNAAIEMQKH 109
++L LE+ K+ ++ A + +G++ S T + +RL+ +A + +
Sbjct: 4 KALNALEYPKIIEKLTDKASSYMGKQLCKNLEPS---TDLEEIRLMQIQTKDALTRLFQK 60
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
GS S + ++ +++ + S L E LA+ ALL+ + ++ R KE DL
Sbjct: 61 GSVSFG----SVKDIRGSLKRLEIGSSLGIQEILAICALLENTSRVKAYSR---KERNDL 113
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ L M L L I + + + D ASPAL+Q R +++ +++ +
Sbjct: 114 PVD--SLDGMFDALSPLTPLSAEIRRCILSEDEFSDDASPALRQIRRNMKITNDRIHTQL 171
Query: 230 DMLIRNENNESLFLEVSSI---HGRLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPL 281
L+ +L+ S I +GR CI A+ +KG + SS+G IEP+
Sbjct: 172 TSLVNG--GVRTYLQDSVITMRNGRYCIPVKAE---YKGQVPGMIHDQSSTGSTLFIEPM 226
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
S V LN+++++ K E +L L++++ ++ + I L ++QLD + ARA ++
Sbjct: 227 SVVKLNNDMRELELQEQKEIEVILADLSQQIALEQETISLNLKIMVQLDFIFARAALAMD 286
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
+ P IF E I L KA HPL+ +K+K
Sbjct: 287 MNASEP-IF---------------------NDEGRINLKKARHPLI---NKKKV------ 315
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
VPIDI + +LVIT
Sbjct: 316 -------------------------------------------VPIDIRLGDTFDLLVIT 332
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ LKTVGL +M +SGLHI + + +++ F V+ADIGDEQS+ QSLSTFS
Sbjct: 333 GPNTGGKTVSLKTVGLLTLMGQSGLHIPTLDRSELALFHEVYADIGDEQSIEQSLSTFSS 392
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+ I + + ++ SLVL DE+ +GT+P EG AL +S+L E G + T+ATTH+ EL
Sbjct: 393 HMTNIVSFLDKADRHSLVLFDELCSGTDPTEGAALAISILSYLHERG-IRTMATTHYSEL 451
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K S ENAC EFD L PTY++L G+PG+S+A I+ +LG+P +++ A++
Sbjct: 452 KVFALSASGVENACCEFDVETLSPTYRLLIGIPGKSNAFAISSKLGIPQSIIEKAKEQLN 511
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK-------ILEHCA 694
+V+ +E + E + L K L + K I+
Sbjct: 512 EQDESFEDVLTSLEESRVTIENERTEIAQYKQEIETLKKQLESKQEKLDIQKDRIIRQAN 571
Query: 695 SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG 754
+ + +Q+ D A L HK +A+ V + Q+LR K+
Sbjct: 572 EEAHKVLQEAKDYADQTMKLFHKFHNDYVDTAA-----VERERQKLR---------QKLN 617
Query: 755 KNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGT 814
K + ++ Q K + TA KD++ GD V V S KGT
Sbjct: 618 KTEQKMS---QPAAKKKPKKELTA-----KDVRP------------GDTVRVLSMNLKGT 657
Query: 815 VIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ SK + VQ+G ++ + +D+
Sbjct: 658 ISTRPDSKGYLFVQMGIIRSKVHISDL 684
>gi|384176446|ref|YP_005557831.1| MutS2 family protein [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349595670|gb|AEP91857.1| MutS2 family protein [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 785
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 231/794 (29%), Positives = 372/794 (46%), Gaps = 124/794 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA--TLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ V A +SLG+E L SI++ + L +DE + I ++
Sbjct: 6 LSALEFHKVKEQVIGHAASSLGKEMLLELKPSASIDEI-KKQLDEVDEASDIIRLRGQAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ A+R S L P+E + LL + ++ + ++ D+ +
Sbjct: 65 FG------GLVDIRGALRRAEIGSVLSPSEFTEISGLLYAVKQMKHFITQMAEDGVDIPL 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ Q QL L + I +D+ G + D AS L+ R Q++ LE ++ ++
Sbjct: 119 ----IHQHAEQLITLSDLERDINSCIDDHGEVLDHASETLRGIRTQLRTLESRVRDRLES 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +N
Sbjct: 175 MLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDMN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQQA+ + E +L LTEK +E+ L + LD + A+A Y+ + T
Sbjct: 235 NSLQQAKVKEKQEIERILRVLTEKTAEYTEELFLDLQVLQTLDFIFAKARYAKAVKAT-- 292
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+P+ + I L KA HPLL
Sbjct: 293 --------------KPIMNDTG------FIRLKKARHPLL-------------------- 312
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
P E V+ DI + R +VITGPNTGG
Sbjct: 313 -----------------------PPEQVVAN---------DIELGRDFSTIVITGPNTGG 340
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT+GL +MA+SGLHI + E ++ F+ VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 341 KTVTLKTLGLLTLMAQSGLHIPADEGSEAAVFEHVFADIGDEQSIEQSLSTFSSHMVNIV 400
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
I+ Q SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y+
Sbjct: 401 GILEQVNENSLVLFDELGAGTDPQEGAALAMSILDDVHRTNARV-LATTHYPELKAYGYN 459
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
+ NA +EFD L PTYK+L GVPGRS+A I++RLGLP ++ A+ A E+
Sbjct: 460 REGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISKRLGLPDHIIGQAKSEMTAEHNEV 519
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
+ +I +E+ K + E + E + LHK L +++I+E + +K + + +A
Sbjct: 520 DTMIASLEQSKKRAEEELSETESIRKEAEKLHKEL---QQQIIELNS----KKDKMLEEA 572
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
++A+++ + +A ++H +LR K +H + +
Sbjct: 573 E-------QQAAEKVKAAMKEAEDIIH----ELRSI-----------KEEHKSFKDHELI 610
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
K A + K +++ KR P GD V V +FG+KGT+++ + E V
Sbjct: 611 NAKKRLEGAVPTFEKSKKPEKTKAQKRDFKP--GDEVKVLTFGQKGTLLE-KTGGNEWNV 667
Query: 828 QVGNMKWIMKFTDI 841
Q+G +K +K D+
Sbjct: 668 QIGILKMKVKEKDL 681
>gi|373494347|ref|ZP_09584952.1| hypothetical protein HMPREF0380_00590 [Eubacterium infirmum F0142]
gi|371968844|gb|EHO86298.1| hypothetical protein HMPREF0380_00590 [Eubacterium infirmum F0142]
Length = 796
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/404 (37%), Positives = 223/404 (55%), Gaps = 27/404 (6%)
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
+E VP+DI I R L+ITGPNTGGKT+ LKT GL VMMA+SGLHI +S + +P
Sbjct: 310 IEYKKAVPVDIRIGGDYRTLIITGPNTGGKTVSLKTAGLLVMMAQSGLHIPASHASTLPV 369
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
F VFADIGDEQS+ QSLSTFS H+K I ++I +++ SLVL+DE+GAGT+P EG AL +
Sbjct: 370 FGDVFADIGDEQSIEQSLSTFSSHMKNIVSVIDKASYDSLVLVDELGAGTDPTEGAALAI 429
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
++LE F +SG+ LT+ATTH+ ELK + ENA MEFD L PTY++L GVPG+S+
Sbjct: 430 AILERFYDSGA-LTMATTHYNELKKYALATSGVENAAMEFDVETLTPTYRLLIGVPGKSN 488
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A I+++LGL V++ A + E VI +E K + +A
Sbjct: 489 AFEISKKLGLSESVIERASEHIKHGDMEFENVISSIEDDKRKAAADRLDAEEM------- 541
Query: 679 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
++ + R + LE K + IS+ A + + A++L A V K +
Sbjct: 542 -RDEIEERLRKLEE-------KEKAISEKRADIIAEAKREARELLRETKSAVKDVQKDLR 593
Query: 739 QLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP 798
+L+ S +++ G N L + ++ E S VVK + P T
Sbjct: 594 KLQKSGART-----NGFNTGALEKSRRKLN----EAENLVSEKVVKQVNSEPVSADT--I 642
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
+GD V + + G+ GT++ + K ++V +G +K + D++
Sbjct: 643 KIGDRVKLLTLGQNGTILSLPDEKGNLMVNIGVLKVKARLEDLM 686
>gi|373116161|ref|ZP_09530317.1| MutS2 family protein [Lachnospiraceae bacterium 7_1_58FAA]
gi|371669625|gb|EHO34724.1| MutS2 family protein [Lachnospiraceae bacterium 7_1_58FAA]
Length = 789
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 199/674 (29%), Positives = 319/674 (47%), Gaps = 106/674 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HG 110
+S+++LE K+ ++ A T G+E L L + D R LDET+AA++M G
Sbjct: 7 KSIQILELPKVLERLAGQAVTQEGKERCLA-LRPMTDP-DDVQRALDETSAAVDMSALRG 64
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
S S +GV V ++++ L E L + A+L+ + R+A +
Sbjct: 65 SPSF--SGV--KPVAASLQRAHMGGALNTRELLDIAAVLR-------AARSAREYGEGDE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIM-QVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ + + L NR L I +V ED I D+ASP L R ++ K+ ++
Sbjct: 114 RKKTCIDHLFRSLTANRFLEDKITGSIVGED-EIADAASPELASIRRHIRATASKVRDIL 172
Query: 230 DMLIRNENNESLFLE---VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAV 284
+ L+ +N++ +L+ ++ + R + ++ + GL+ SSSG IEP+ V
Sbjct: 173 NKLL--SSNQAKYLQEAIITQRNDRFVVPVKSEHKNDVPGLVHDVSSSGATFFIEPMGVV 230
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
N+EL++ +A K E +L L+ + D+I + + +I LDV+ ARA +
Sbjct: 231 KANNELKELQAREEKEIERILAELSAECAQFKDDITQDYDLLILLDVIFARAKLAYRMRA 290
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
+P I E +YL KA HPL
Sbjct: 291 CAPRIV-----------------------ERGLYLRKARHPL------------------ 309
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
L P V D+ + LVITGPN
Sbjct: 310 ------------------------LDPD----------RAVANDLMLGEDFDTLVITGPN 335
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ +KT+GL +MA+ GLHI S+ ++V F V AD+GDEQS++QSLSTFS H+
Sbjct: 336 TGGKTVTIKTIGLLTLMAQCGLHIPVSDDSRVKVFRRVLADVGDEQSIAQSLSTFSSHMV 395
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I I+ ++ ++L+L DE+GAGT+P+EG AL +++E+ E G+L+ ATTH+ ELK
Sbjct: 396 NIVGILGEADDETLILFDELGAGTDPIEGAALAAAIIESAREMGALVA-ATTHYAELKVY 454
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
+ ENA EF+ L PTY++L G+PG+S+A I+ERLGLP ++Q A+
Sbjct: 455 AMTTPGVENASCEFNVDSLAPTYRLLIGIPGKSNAFAISERLGLPKSIIQK-------AA 507
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
A I+ + E TQ E E + L + + T + E+ A + + +
Sbjct: 508 ARIDAENVRFEDVLTQLDEQRQEMEREKEAAARLRREMEETAKASREYKAKMEAERAKAV 567
Query: 705 SDAAAIARSLVHKS 718
A A AR+++ ++
Sbjct: 568 EKAQAEARAILDEA 581
>gi|300813660|ref|ZP_07093982.1| putative recombination and DNA strand exchange inhibitor protein
[Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300512202|gb|EFK39380.1| putative recombination and DNA strand exchange inhibitor protein
[Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 788
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 223/798 (27%), Positives = 377/798 (47%), Gaps = 140/798 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM-QKHG 110
+++R LE +K+ + FA ++ ++ I+ Y++ + L ET+ A+ + K G
Sbjct: 5 KAIRTLELNKILDKLKYFASANITKD--YIDEIEISTDYEEINKRLKETSEAVSLIVKKG 62
Query: 111 SCSLDLTGVDLSLVKSAIREV-RRAS---PLRPNEALAVVALLQFSETLQLSLRAAIKED 166
L +++ ++R+V RRAS L P+ + + L+ S L+ L+ K+D
Sbjct: 63 EPPL------FAII--SLRDVLRRASLGGILNPSNLIDISNFLRVSRLLKNYLK---KDD 111
Query: 167 ADLYIRFMPLTQ-MIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
D + + + +I L++NR+L SI + + + + D AS L R + L+ L
Sbjct: 112 KDENTENISIIKDLIDNLYINRNLEDSINKKIISEDQVADDASRKLLSIRRNIVKLQGSL 171
Query: 226 YQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
+ ++ +++++ + ++ GR I + S KGL+ S SG IEP+
Sbjct: 172 REKLEKILQSQKDYLQDCIITMREGRYVIPVRNENKSKVKGLVHDISGSGQTVYIEPIEV 231
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGII--QLDVVNARATYSLS 341
V N+E++ + + E +L L+E++ IE N +I ++D + A+ SL
Sbjct: 232 VNANNEIKTLKIEEKEEVEKILKELSEEVAEVSTSIES--NELILREIDFIFAKGKLSLD 289
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
G P + + I L AYHPLL
Sbjct: 290 MGANLPKV----------------------NKNRYIDLKNAYHPLL-------------- 313
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
RK+ VPI+I+I + L+IT
Sbjct: 314 ---------NRKI-----------------------------AVPINIYIGKDFTSLIIT 335
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ LKT+G+ +MA+ GLHI + E ++V F+++FADIGDEQS+ Q+LSTFS
Sbjct: 336 GPNTGGKTVTLKTLGILQLMAQYGLHIPADEDSQVGIFNNLFADIGDEQSIEQNLSTFSS 395
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+ I I+ + SLVL DE+GAGT+P EG AL S+++ E + I+TTH+ +L
Sbjct: 396 HMTNIVEILEKVDEDSLVLFDELGAGTDPTEGAALARSIMDFMLER-KIRCISTTHYNQL 454
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K + + +NA MEFD L PTYK+L G+PG+S+A I++RLGL ++ +AR L
Sbjct: 455 KIYALTTEGVKNASMEFDINTLSPTYKLLIGLPGKSNAFEISKRLGLSQKIINHARDLIS 514
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
+ E +V+ +E+ +T+ R F L++ HK+ L + LE+ ++
Sbjct: 515 QENIEFEKVLASIEKDRTK-------TREFKELAKR-HKSDLEKQNARLEN-------EL 559
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP--SASQSLHCTKVG---KN 756
+KI ++ A+++ S + L+ L+ S+ Q+ + G +N
Sbjct: 560 KKIENSKEKILKEAKDEARRILLSTKENVDLILDEISSLKAEISSDQARRIQESGDLLRN 619
Query: 757 QHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVI 816
N ++ ++K + P ++DIK VGD V +SFG TV+
Sbjct: 620 SIRKVDNDKKFVIEKAKKP-------IEDIK------------VGDQVR-NSFGNISTVL 659
Query: 817 KVEPSKEEIVVQVGNMKW 834
++ SK I +Q G MK
Sbjct: 660 ELPDSKGNIYIQSGIMKM 677
>gi|365845197|ref|ZP_09385983.1| MutS2 family protein [Flavonifractor plautii ATCC 29863]
gi|364561374|gb|EHM39279.1| MutS2 family protein [Flavonifractor plautii ATCC 29863]
Length = 789
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 199/674 (29%), Positives = 319/674 (47%), Gaps = 106/674 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HG 110
+S+++LE K+ ++ A T G+E L L + D R LDET+AA++M G
Sbjct: 7 KSIQILELPKVLERLAGQAVTQEGKERCLA-LRPMTDP-DDVQRALDETSAAVDMSALRG 64
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
S S +GV V ++++ L E L + A+L+ + R+A +
Sbjct: 65 SPSF--SGV--KPVAASLQRAHMGGALNTRELLDIAAVLR-------AARSAREYGEGDE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIM-QVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ + + L NR L I +V ED I D+ASP L R ++ K+ ++
Sbjct: 114 RKKTCIDHLFRSLTANRFLEDKITGSIVGED-EIADAASPELASIRRHIRATASKVRDIL 172
Query: 230 DMLIRNENNESLFLE---VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAV 284
+ L+ +N++ +L+ ++ + R + ++ + GL+ SSSG IEP+ V
Sbjct: 173 NKLL--SSNQAKYLQEAIITQRNDRFVVPVKSEHKNDVPGLVHDVSSSGATFFIEPMGVV 230
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
N+EL++ +A K E +L L+ + D+I + + +I LDV+ ARA +
Sbjct: 231 KANNELKELQAREEKEIERILAELSAECAQFKDDITQDYDLLILLDVIFARAKLAYRMRA 290
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
+P I E +YL KA HPL
Sbjct: 291 CAPRIV-----------------------ERGLYLRKARHPL------------------ 309
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
L P V D+ + LVITGPN
Sbjct: 310 ------------------------LDPD----------RAVANDLMLGEDFDTLVITGPN 335
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ +KT+GL +MA+ GLHI S+ ++V F V AD+GDEQS++QSLSTFS H+
Sbjct: 336 TGGKTVTIKTIGLLTLMAQCGLHIPVSDDSRVKVFRRVLADVGDEQSIAQSLSTFSSHMV 395
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I I+ ++ ++L+L DE+GAGT+P+EG AL +++E+ E G+L+ ATTH+ ELK
Sbjct: 396 NIVGILGEADGETLILFDELGAGTDPIEGAALAAAIIESAREMGALVA-ATTHYAELKVY 454
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
+ ENA EF+ L PTY++L G+PG+S+A I+ERLGLP ++Q A+
Sbjct: 455 AMTTPGVENASCEFNVDSLAPTYRLLIGIPGKSNAFAISERLGLPKSIIQK-------AA 507
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
A I+ + E TQ E E + L + + T + E+ A + + +
Sbjct: 508 ARIDAENVRFEDVLTQLDEQRQEMEREKEAAARLRREMEETAKASREYKAKMEAERAKAV 567
Query: 705 SDAAAIARSLVHKS 718
A A AR+++ ++
Sbjct: 568 EKAQAEARAILDEA 581
>gi|310658450|ref|YP_003936171.1| recombination and DNA strand exchange inhibitor protein
[[Clostridium] sticklandii]
gi|308825228|emb|CBH21266.1| recombination and DNA strand exchange inhibitor protein
[[Clostridium] sticklandii]
Length = 793
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 220/804 (27%), Positives = 369/804 (45%), Gaps = 144/804 (17%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
SL+VLE+D + + F T+LG++ S+++ ++ E QK
Sbjct: 10 SLKVLEFDSIKSMLLDFTVTTLGKKHVENLYPSVSRE-----NIIFSQKQTSEAQK---I 61
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
L V +S + +RAS + L LL+ S+TL++ + ++R
Sbjct: 62 ILTRGNVPISALGQVSEYAKRASI---DAILEPYQLLKISDTLRICRKVK------NFLR 112
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDE----DGSIKDSASPALKQSRGQVQMLERKLYQL 228
T ++ QL N +++K + +D + I D+ASP L + R + + ++ Q
Sbjct: 113 DSENTPILQQLSENITILKDLEDEIDNAIISEEEISDNASPELSKVRRSITNTKEQIRQK 172
Query: 229 MDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAV 284
+ ++ + E V+ R + A+ S G++ SSSSG IEP++ V
Sbjct: 173 LSSIVSSSQYSKYLQEAIVTMRQDRFVVPVKAENRSNVPGIVHDSSSSGATLFIEPMAVV 232
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
+N++L++ + + E +L L+ + EI I ++D + A+ S+
Sbjct: 233 EMNNKLREYKVKEQEEIERILTVLSAMAGLSYHEIRTNEQMIAEIDFIMAKGKLSVKMKA 292
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
P F+ D+ + L A HPL+
Sbjct: 293 QEP--FINSDL--------------------VMNLKNARHPLI----------------- 313
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
N+ PS +I I ++ LVITGPN
Sbjct: 314 --------------------DPKNVVPS---------------NINIGKEFDTLVITGPN 338
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LKT+GL +MA+SGLH+ + + FD++FADIGDEQS+ QSLSTFS H+
Sbjct: 339 TGGKTVTLKTIGLFAIMAQSGLHLPTDYGTSICIFDNIFADIGDEQSIEQSLSTFSSHMT 398
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I NI+ + LVL DE+GAGT+PLEG AL +S+L+ E L+T+ATTH+ ELK
Sbjct: 399 HIVNILDEVKDNCLVLFDELGAGTDPLEGAALAVSILDRLREY-KLITVATTHYSELKHY 457
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
+ + ENA +EFD L PTY++L G+PG+S+A I+ +LGL ++ A+ + S
Sbjct: 458 ALTTNRVENASVEFDVQTLSPTYRLLIGIPGKSNAFEISRKLGLKEEIILAAKHHLDSDS 517
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
+ +V+ E++ + Q +E E SR ++++ + + ++ E + +K + I
Sbjct: 518 ISMEDVLKEIDDNRKQ-IETEREQ------SRIIYEDAKKLQTRLKEKESKLDTQKDKII 570
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSL--------VHKRAQQLRPSASQSLHCTKVG-K 755
+A AR L+ ++ ++ + + R L ++K + R SL K G K
Sbjct: 571 QEAKNEARKLLQQAKEEADEAIKELRELSKRAEKQNINKEIEASRRKIKTSLD--KYGYK 628
Query: 756 NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
NQ ++T KD+ + ++ GD V+V SF K TV
Sbjct: 629 NQDLITE---------------------KDV-----INPVDIIVAGDEVYVPSFSKNATV 662
Query: 816 IKVEPSKEEIVVQVGNMKWIMKFT 839
+ V+ K+E +VQ+G MK + F+
Sbjct: 663 VSVDNDKKEALVQIGIMKLNLPFS 686
>gi|238926801|ref|ZP_04658561.1| recombination and DNA strand exchange inhibitor protein MutS2
[Selenomonas flueggei ATCC 43531]
gi|238885333|gb|EEQ48971.1| recombination and DNA strand exchange inhibitor protein MutS2
[Selenomonas flueggei ATCC 43531]
Length = 785
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 213/796 (26%), Positives = 376/796 (47%), Gaps = 131/796 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ES +VLE++K+ ++S+A T+ G+E + S + Y +L ET A+ + +
Sbjct: 4 ESFKVLEYEKIKARLASYAATAYGKERCSNIMPSSD--YDHIAQLHMETEEAVRVAQIQP 61
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
D + ++ +++ R L +E V + + ++ R + DA+L
Sbjct: 62 PPFD----GIHHLREILKKAGRGILLELDELRLVKSTIGGMRDVKYFFRD-LSADAEL-- 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L ++ ++ + L +++ +DE G+ +D ASP L + +++ + ++ +
Sbjct: 115 ----LKELARRIEILGMLERNLKAAIDEYGNFRDDASPVLHRITNELRTAQSRVKDRLSS 170
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLN 287
++ + + +F E V+ R I + S F G++ S+SG IEPL+ V LN
Sbjct: 171 VLHDAAYQKMFQEAIVTVRDERYVIPVKQEYRSQFPGVIHDQSASGATLFIEPLAIVELN 230
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ ++Q + + ++ LT ++ D + + LD++ ARA+
Sbjct: 231 NTVRQMGIAREQEILRIMQRLTGEIARSADILSANCTILSDLDLIFARAS---------- 280
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
L ++M+ + P+ + R+ +YL +A HPL
Sbjct: 281 ---LAREMR---AYPPILN------RDGYVYLRRARHPL--------------------- 307
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
L L VPIDI + + L+ITGPNTGG
Sbjct: 308 -------------------------------LPLDKVVPIDIALGKTFSTLLITGPNTGG 336
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ +KT+G+ +M++SG + + +++P + +++ADIGDEQS+ QSLSTFS H + I
Sbjct: 337 KTVSMKTLGILALMSQSGCFLPAESGSEIPVYQNIYADIGDEQSIEQSLSTFSAHTRNIV 396
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
II ++TS LVLLDE+GAGT+P EG AL S++E F + + T+ATTH+ +LKT Y+
Sbjct: 397 RIIDRATSGDLVLLDEVGAGTDPDEGAALARSIIEHFLMN-RIATVATTHYADLKTYAYT 455
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
ENA +EFD L+PTY++L G+PG S+A +I+ +LGL +V A + A
Sbjct: 456 QQGVENASVEFDLKTLRPTYRLLIGIPGASNAFSISRQLGLSEEIVARAEEYVSEDHAHF 515
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
V+ ++E KT + E KN L +++ A +R R ++
Sbjct: 516 ETVVHDLECAKTIYEE----------------KNQLLYKKETDIGRAEERLR-----AER 554
Query: 708 AAIARS---LVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKV-GKNQHVLTSN 763
AA +S L HK+ ++ +AR + + + L+ H K K H S
Sbjct: 555 AAFEQSKKELFHKAREEANNIVREARRIAEETIKSLKEQFDD--HGIKERQKAIHEARSR 612
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+T + + + S+ KDI +GD V++ + ++GTV+ ++ E
Sbjct: 613 LNETYIHDMPQK---NPSIGKDIHPGD-------VQIGDTVYIRTLAQEGTVLSLQ--GE 660
Query: 824 EIVVQVGNMKWIMKFT 839
E+ VQVG ++ I+K +
Sbjct: 661 ELTVQVGGLRTIVKMS 676
>gi|289578704|ref|YP_003477331.1| MutS2 family protein [Thermoanaerobacter italicus Ab9]
gi|289528417|gb|ADD02769.1| MutS2 family protein [Thermoanaerobacter italicus Ab9]
Length = 791
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 197/680 (28%), Positives = 320/680 (47%), Gaps = 110/680 (16%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGS 111
+L+ LE+DK+ + S+ + LG++ + I + ++ R LD N AI + +G
Sbjct: 9 ALKSLEFDKIVEFIVSYCDSDLGKQKASDIV--IKKDIEEIERELDLLNEAIYFISSYGG 66
Query: 112 CSLDLTGVDLSLVKSAIREV--RRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
S + + K+ I V + V + + + LQ ++D
Sbjct: 67 ISFAFEDIRDYIKKAQIDSVLYNKELLKIKKFLKLVSQIKSYFKNLQ---------ESDR 117
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
++R + ++ + + L K I ++ + I D ASP LK R Q + K+ +
Sbjct: 118 FVRLKEYDKKVLPI---KDLEKRIENIIISEDEIADDASPLLKSLRRQKSAINEKIRATL 174
Query: 230 DMLIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLN 287
+ +I E ++ GR + + S FKG++ SSSG IEP+ V LN
Sbjct: 175 NSIISTRQKELQEPIITVRQGRYVVPVKQEYRSTFKGIVHDQSSSGATLFIEPMQVVDLN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+EL+Q + + +L L+++++ + + + +LD A+A
Sbjct: 235 NELRQVELKERQEIQRILFELSQEVKKYAQALFNDIEIVSELDFTFAKA----------- 283
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
K SL + V ++++ I L KA HPL+ Q+A
Sbjct: 284 --------KYSLKLKAVRPELNTM---GYINLKKARHPLI-------NQEAV-------- 317
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
VPIDI+I + LVITGPNTGG
Sbjct: 318 -------------------------------------VPIDIYIGDQFNTLVITGPNTGG 340
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKTVGL +MA +GL+I + E ++V F+ +F DIGDEQS+ QSLSTFS H+ I
Sbjct: 341 KTVTLKTVGLLTIMAMAGLNIPAEEGSQVSIFEEIFVDIGDEQSIEQSLSTFSSHMTNII 400
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
+++ + L LLDE+GAGT+P+EG AL MS+L+ + G+ TIATTH+ ELK
Sbjct: 401 SMLQKVNKNCLALLDELGAGTDPVEGAALAMSILDTLHKIGA-KTIATTHYSELKQYALK 459
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
ENA +EFD LKPTYK++ G+PG+S+A IA+RLGLP ++++AR+ + +
Sbjct: 460 TAGVENASVEFDVETLKPTYKLIIGLPGKSNAFEIAKRLGLPRQIIEDARKYISGEALKF 519
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLL----------RTRRKILEHCASQR 697
++I ++E + + + HE L +N+ R KIL+ A +R
Sbjct: 520 EDIIADVESKRRELEKANHE---MAFLRKNVEILKEELEKEKKKLQNERDKILKE-AKER 575
Query: 698 FRKVQKISDAAAIARSLVHK 717
RK+ + +A A ++ K
Sbjct: 576 ARKI--VQEAKFTAEGIIKK 593
>gi|266619519|ref|ZP_06112454.1| DNA mismatch repair protein MutS [Clostridium hathewayi DSM 13479]
gi|288868929|gb|EFD01228.1| DNA mismatch repair protein MutS [Clostridium hathewayi DSM 13479]
Length = 799
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 216/807 (26%), Positives = 369/807 (45%), Gaps = 144/807 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAI-EMQKHG 110
++L+ LE+DK+ ++ +A G+E + SI+ Y + + ET A+ +++ G
Sbjct: 4 KALKTLEYDKIIVQLAEYASCESGKELCRRLVPSID--YDEIVTAQRETTDAVTRVRQKG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRA---AIKEDA 167
G+ VK ++R L +L +V LL S L + RA ED+
Sbjct: 62 -------GISFGGVKDIRASLKR---LEVGSSLGIVELLSVSSLLTTAARAKSYGRHEDS 111
Query: 168 DL--------YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQ 219
+L + PLT VN + + I+ + + D ASP L R ++
Sbjct: 112 ELPEDSLEQFFSVLEPLTP------VNTEIRRCILS----EEEVSDDASPGLHHVRRSMK 161
Query: 220 MLERKLYQLMDMLIRNENNESLFLEVSSI---HGRLCIRTGADQLSFKGLLLSSSSGIGS 276
+ K++ ++ ++ N+ +L+ + I GR C+ ++ S ++ S GS
Sbjct: 162 NIHDKIHTQLNSIL---NSNRTYLQDAVITMRDGRYCLPVKSEHKSNVPGMVHDQSSTGS 218
Query: 277 V--IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNA 334
IEP++ + LN++L+ K E VL L+ ++ DE+ + +LD + A
Sbjct: 219 TLFIEPMAILKLNNDLRALEIQEQKEIEMVLADLSNQLVPYQDELLTDFEVLTRLDFIFA 278
Query: 335 RATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQK 394
+A S + + P ++ I++ HPLL
Sbjct: 279 KAALSRHYQASEPRF----------------------NKKGIIHIKDGRHPLL------- 309
Query: 395 TQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARK 454
PS++ VPI + + R
Sbjct: 310 -----------------------------------DPSKV----------VPITVHLGRD 324
Query: 455 TRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQ 514
+LV+TGPNTGGKT+ LKTVGL ++ ++GLHI + + +++ FD VFADIGDEQS+ Q
Sbjct: 325 FDLLVVTGPNTGGKTVSLKTVGLFTLIGQAGLHIPAFDGSELSVFDEVFADIGDEQSIEQ 384
Query: 515 SLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIA 574
SLSTFS H+ I I+ Q+ S+SL L DE+GAGT+P EG AL +++L +F + T+A
Sbjct: 385 SLSTFSAHMTNIVQILGQADSRSLCLFDELGAGTDPTEGAALAIAIL-SFLHNMKCRTMA 443
Query: 575 TTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQ 634
TTH+ ELK + ENAC EF+ L+PTY++L GVPG+S+A I+ +LGLP +++
Sbjct: 444 TTHYSELKVFALTTPGVENACCEFNVETLQPTYRLLIGVPGKSNAFAISSKLGLPDYIIE 503
Query: 635 NARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCA 694
+A+ A +++ +E+ + + + + M L L + ++ E
Sbjct: 504 DAKTHLEAKDETFEDLLTHLEQNRVTIEKERIQIESYKMEVEKLKARLTQKEERLDE--- 560
Query: 695 SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG 754
R+ + I DA A+ ++ A+ + +Q+ AS+S VG
Sbjct: 561 ----RRDKMIRDAKEEAQRILR-----------DAKDTADQTIRQINKLASES----GVG 601
Query: 755 KNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGT 814
K + + K + + + K+ KQS K+ +L GD V V S GT
Sbjct: 602 KELEAERARIRGKL--KEVDSSLSLKNQTKEPKQSIDPKKLKL---GDGVRVLSMNLNGT 656
Query: 815 VIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V + SK ++ VQ+G ++ ++ +D+
Sbjct: 657 VSSLPNSKGDLYVQMGILRSLVNLSDL 683
>gi|350267033|ref|YP_004878340.1| MutS2 family protein [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349599920|gb|AEP87708.1| MutS2 family protein [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 785
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 230/795 (28%), Positives = 374/795 (47%), Gaps = 126/795 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA--TLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ V A +SLG+E L SI++ + L +DE +A I ++
Sbjct: 6 LSALEFHKVKEQVIEHAASSLGKEMLLELKPSASIDEI-KKQLDEVDEASAIIRLRGQAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++ A+R S L P+E + LL + ++ + ++ D+
Sbjct: 65 FG------GLTDIRGALRRAEIGSVLSPSEFTEISGLLYAVKQMKHFISQMAEDGVDI-- 116
Query: 172 RFMPLTQM-IMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
PL Q QL L + I +D+ G + D AS L+ R Q++ LE ++ ++
Sbjct: 117 ---PLIQQHTEQLITLSDLERDINSCIDDHGEVLDHASETLRGIRTQLRTLESRIRDRLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +
Sbjct: 174 SMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ LQQA+ + E +L LTE+ +E+ + L+ + LD + A+A Y+ + T
Sbjct: 234 NNSLQQAKVKEKQEIERILRVLTEQTAEHTEELFQDLHVLQTLDFIFAKARYAKAVKAT- 292
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
+P+ + + L KA HPL
Sbjct: 293 ---------------KPIMND------NGFVRLKKARHPL-------------------- 311
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
L P ++ V DI + +VITGPNTG
Sbjct: 312 ----------------------LPPDQV----------VANDIELGGDFSTIVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA+SGLHI + E ++ F+ VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTVTLKTLGLLTLMAQSGLHIPADEGSEAAVFEHVFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ Q SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y
Sbjct: 400 VGILEQVNENSLVLFDELGAGTDPQEGAALAMSILDDVHRTHARV-LATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A I++RLGLP ++ A+ A E
Sbjct: 459 NREGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISKRLGLPDHIIGQAKSEMTAEHNE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++ +I +E+ K + E + E + LHK L +++I+E + +K + + +
Sbjct: 519 VDTMIASLEQSKKRAEEELSETESIRKEAEKLHKEL---QQQIIELNS----KKDKMLEE 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A ++A ++ + +A ++H +LR K +H + +
Sbjct: 572 AE-------QQAADKVKAAMKEAEDIIH----ELRSI-----------KEEHKSFKDHEL 609
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
K A + K +++ KR P GD V V +FG+KGT+++ + E
Sbjct: 610 INAKKRLEGAVPTFEKSKKPEKTKTQKRDFKP--GDEVKVLTFGQKGTLLE-KTGGNEWN 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K +K D+
Sbjct: 667 VQIGILKMKVKEKDL 681
>gi|366090394|ref|ZP_09456760.1| DNA mismatch repair protein [Lactobacillus acidipiscis KCTC 13900]
Length = 786
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 171/537 (31%), Positives = 260/537 (48%), Gaps = 82/537 (15%)
Query: 197 VDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSI-HGRLCIR 255
++ DG + D AS LK R Q+ E+ + + R ++ + L V +I R +
Sbjct: 140 IENDGHVTDDASSLLKSLRRQIITTEQSIRDTLADFTRGKSAKYLSEAVVTIRQDRYVLP 199
Query: 256 TGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQ 313
A+ + SF G + S+SG IEP V LN+ L Q A+ + +L L+E +
Sbjct: 200 VKAEYRNSFGGQVYDQSTSGQTLFIEPKQIVALNNRLSQQEAAQKEEVRRILRELSELIA 259
Query: 314 VDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSER 373
EIE + LD+ NA+A Y+ G + P FL D
Sbjct: 260 PYTSEIEANAQLLGHLDLANAKAAYAKDLGASEP--FLTDD------------------- 298
Query: 374 EWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSE 433
++Y +A+HPL L P +
Sbjct: 299 -DSLYFRQAWHPL------------------------------------------LDPKK 315
Query: 434 MQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY 493
V DI + + + ++ITGPNTGGKTI LKT+GL +M +SGL I ++E
Sbjct: 316 ----------AVKNDIMLGKDFKTMLITGPNTGGKTITLKTIGLIQLMGQSGLFIPANEG 365
Query: 494 AKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553
+++ F +FADIGDEQS+ Q+LSTFS H+ I + + Q + +SLVL DE+G+GT+P EG
Sbjct: 366 SRICIFAEIFADIGDEQSIEQNLSTFSSHMTNIVDFLDQISPRSLVLFDELGSGTDPQEG 425
Query: 554 TALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGV 613
AL +++L+ A GS + +ATTH+ ELK Y NA +EFD LKPTYK+L G+
Sbjct: 426 AALAIAILDDVAAKGSYV-VATTHYPELKVYGYERPETVNASVEFDSSTLKPTYKLLIGI 484
Query: 614 PGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLM 673
PGRS+A++I+ RLGLP ++ +A QL S ++N +I ++ + + E + +L+
Sbjct: 485 PGRSNALDISRRLGLPQTIIDSATQLVSKDSQDLNNMIGDLVQKRHDAEEEKIQTHKYLV 544
Query: 674 LSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
S LH +L K QR + ++K A + K A Q+ Q R
Sbjct: 545 ESEQLHSDL----EKAYAALNDQRDKLLEKAKQKANDTVAETTKKADQIIADLRQLR 597
>gi|398306013|ref|ZP_10509599.1| recombination and DNA strand exchange inhibitor protein [Bacillus
vallismortis DV1-F-3]
Length = 785
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 233/795 (29%), Positives = 372/795 (46%), Gaps = 126/795 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA--TLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ V A +SLG+E L SI++ + L +DE +A I ++
Sbjct: 6 LSALEFHKVKEQVIEHAASSLGKEMLLALQPSASIDEI-KKQLDEVDEASAIIRLRGQAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ A+R S L P E + LL + ++ + ++ D+
Sbjct: 65 FG------GLVDIRGALRRAEIGSVLSPAEFTEISGLLYAVKQMKHFISQMAEDGVDI-- 116
Query: 172 RFMPLT-QMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
PL Q QL L + I +D+ G + D AS L+ R Q++ LE ++ ++
Sbjct: 117 ---PLIHQHAEQLITLSDLERDINSCIDDHGEVLDHASETLRGIRTQLRTLESRIRDRLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +
Sbjct: 174 SMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ LQQA+ + E +L LTE+ +E+ + L+ + LD + A+A Y+ + T
Sbjct: 234 NNSLQQAKVKEKQEIERILRMLTEQTAEHTEELFQDLHVLQTLDFIFAKARYAKAVKATK 293
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P L D + L KA HPLL
Sbjct: 294 P---LMND-------------------SGFVRLKKARHPLL------------------- 312
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
P+E V+ DI + +VITGPNTG
Sbjct: 313 ------------------------PAEQVVAN---------DIELGGDFSTMVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA+SGLHI + E ++ F+ VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTVTLKTLGLLTLMAQSGLHIPADEGSEAAVFEHVFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ Q SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y
Sbjct: 400 VGILEQVNENSLVLFDELGAGTDPQEGAALAMSILDDVHRTNARV-LATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A I++RLGLP ++ A+ A E
Sbjct: 459 NREGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISKRLGLPDHIIGQAKSEMTAEHNE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++ +I +E+ K + E + E + LHK L +++I+E + +K + + +
Sbjct: 519 VDTMIASLEQSKKRAEEELSETEAIRREADKLHKEL---QQQIIELNS----KKDKMLEE 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A ++A+++ + +A ++H +LR K +H + +
Sbjct: 572 AE-------QQAAEKVKAATKEAEDIIH----ELRSI-----------KQEHRSFKDHEL 609
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
K A + K ++ KR P GD V V +FG+KGT+++ + E
Sbjct: 610 INAKKRLEGAVPTFEKSKKPEKPKTQKRNFKP--GDEVKVLTFGQKGTLLE-KTGGSEWN 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K +K D+
Sbjct: 667 VQIGILKMKVKEKDL 681
>gi|414153028|ref|ZP_11409355.1| MutS2 protein [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411455410|emb|CCO07257.1| MutS2 protein [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 783
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 231/797 (28%), Positives = 365/797 (45%), Gaps = 130/797 (16%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSL--RLLDETNAAIEMQKHG 110
+++ LE+DK+ +++ A++ RE ++ + +L R L ET+ E+ +
Sbjct: 4 TIKRLEFDKVLEQLAACAQSEPARE----KIKDLVPGSDPALIKRRLAETSEGRELLRLD 59
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
+ +L+G ++ A+ V R + L E LAV ETL S R K +
Sbjct: 60 PLA-ELSG--WHDIRDALARVSRYAVLAAEELLAV------GETLAASRRIK-KFFNEKS 109
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
R+ L+++ L L K I++ + G I D ASP L Q R + + ++ + ++
Sbjct: 110 HRYPLLSEIAASLTQQPQLEKDILRAILPGGEIADHASPQLLQIRRGILRAQNRIRERVE 169
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
+IR N+ E V+ R I + + G++ S+SG +EPL+ V
Sbjct: 170 SIIRAPENQKYLQEPIVTVRQDRYVIPVKQEYRNQIPGIVHDQSASGATLFVEPLAVVDA 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+E+++ A+ + + +L L++ + E+ L + +LD + ARA YSL S
Sbjct: 230 NNEVRRLMAAEKQEIQRILAELSQGVSAVAQELSLALQALAELDYIMARARYSLKLKAWS 289
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P I +E IY+ + HPLL
Sbjct: 290 PQI---------------------TEGSPYIYIKQGRHPLL------------------- 309
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
G+A VP I + + + LVITGPNTG
Sbjct: 310 ---------PGDA-------------------------VPATIELGKNFKTLVITGPNTG 335
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKTVGL +M ++GLHI + + + +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 336 GKTVTLKTVGLFALMTQAGLHIPAEAGTTMGVYKKIFADIGDEQSIEQSLSTFSSHMTNI 395
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
+I+ Q SLVLLDE+GAGT+P EG AL ++LE G+ TIATTH+ ELK Y
Sbjct: 396 VHILQQVDEDSLVLLDELGAGTDPTEGAALARAILEELHNRGA-CTIATTHYSELKNYAY 454
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ ENA +EFD L+PTY++L G PGRS+A I+ RLGL +V ARQ +
Sbjct: 455 TTPGVENASVEFDAETLRPTYRLLIGRPGRSNAFEISARLGLRPDIVNRARQFLTTEQVQ 514
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+ E+I ++E KTQ A + R + L R++ E R +K + ++
Sbjct: 515 VAELINKLE--KTQQAAEKDRAAAAAL--RRESEQLQEEYRRLAEEL---RTKKEEILAR 567
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A A S V ++ + + + R+ + + + R A Q S QQ
Sbjct: 568 AHEEAGSFVRRARLEAEEAVKELRARLAEENTKNREEAIQQAR------------SKLQQ 615
Query: 767 TTVDKVE--HPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEE 824
T +KV P A++ V D +VK G+ V + + +K V+ V S E
Sbjct: 616 VT-NKVTTGAPQPAAAGEVPD-----QVK------PGEEVFLPKYNQKAYVLSV--SGEN 661
Query: 825 IVVQVGNMKWIMKFTDI 841
+ VQ G +K ++ ++
Sbjct: 662 VQVQAGILKMVVPVQEL 678
>gi|320529025|ref|ZP_08030117.1| putative recombination and DNA strand exchange inhibitor protein
[Selenomonas artemidis F0399]
gi|320138655|gb|EFW30545.1| putative recombination and DNA strand exchange inhibitor protein
[Selenomonas artemidis F0399]
Length = 785
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 217/803 (27%), Positives = 372/803 (46%), Gaps = 136/803 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAI---EMQK 108
E +VLE++K+ ++SFA + G+E L + + + LRL ET A+ +MQ
Sbjct: 4 EVFKVLEYEKIKDRLASFASSMRGKE--LCRTMTPASDFDTVLRLHAETAEAVSVLQMQ- 60
Query: 109 HGSCSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
S G+ DL + +++ S L E +++ +Q ++ R DA
Sbjct: 61 ----SPPFGGIYDL---RRTLQKATLGSILEVEELREIMSTMQGMRNVKYFFR-----DA 108
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
+L + L + +++ + L K + +DE G+ +D ASP L++ ++ + ++ +
Sbjct: 109 ELSLPL--LKEKSVRIEILGMLEKHLQNTIDEHGNFRDDASPELRRVTREMLSAQNRVKE 166
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSA 283
+ ++ + + F E V+ R I + + F G++ S+SG +EPL+
Sbjct: 167 RLSAILHDAAYQKCFQEAIVTVRAERYVIPVKQEYRAQFPGVIHDRSASGATLFVEPLAT 226
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+ ++Q + + +L L++++ D + + + +D++ ARA S
Sbjct: 227 VELNNTVRQMELAREQEIRRILQQLSQEIARAADILSENCTILADIDLIFARAGLSRDME 286
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
+P R + L +A HPLL
Sbjct: 287 AYAPTF----------------------NRAGYVRLQRARHPLL---------------- 308
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
P + H VPIDI + R VL+ITGP
Sbjct: 309 ---------------------------PKD---------HVVPIDIELGRDFSVLLITGP 332
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ +KT+G+ +MA+SG + ++ A++P + S++ADIGDEQS+ QSLSTFS H
Sbjct: 333 NTGGKTVSMKTLGILALMAQSGCFLPTASGAELPVYGSIYADIGDEQSIEQSLSTFSAHT 392
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
K I I+ ++ S LVLLDE+GAGT+P EG AL S++E + + IATTH+ LKT
Sbjct: 393 KNIVRILQKAKSDDLVLLDEVGAGTDPGEGAALARSIIEHLLQR-RISVIATTHYAALKT 451
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
Y NA +EFD L+PTY++L G PG S+A +I+ RLGL +V A++
Sbjct: 452 YAYGRQGVMNASVEFDTGTLRPTYRLLIGTPGASNAFSISRRLGLADAIVARAQRYIDED 511
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
V+ E+E+ K V+E R + LRTR + + Q + K
Sbjct: 512 HVRFETVVNELEQEK-----RVYETR----------QTELRTRAQKISAMEEQLRTERDK 556
Query: 704 ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
A R L+HK+ ++ +AR + ++L+ Q V + + +
Sbjct: 557 FIRA---HRELLHKAREEANGIVREARRSAEETIKKLK----QQFDDHGVKERRKAIQEA 609
Query: 764 FQQTTVDKV--EHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPS 821
++ T + HP+ A K ++ E+ GD+VH++ ++GTV ++
Sbjct: 610 RERLTEAYMPQRHPSAA--------KVGQKIHAGEI-EPGDIVHITRLAQEGTVFAIQ-- 658
Query: 822 KEEIVVQVGNMKWIMKFTDIVTY 844
+E+ VQ+G ++ ++K TD T+
Sbjct: 659 GKELTVQIGALRTVVK-TDECTF 680
>gi|331701294|ref|YP_004398253.1| MutS2 protein [Lactobacillus buchneri NRRL B-30929]
gi|329128637|gb|AEB73190.1| MutS2 protein [Lactobacillus buchneri NRRL B-30929]
Length = 788
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 214/793 (26%), Positives = 378/793 (47%), Gaps = 119/793 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQD-SLRLLDETNAAIEMQKHGSC 112
L LE+ K+ ++ + T GR+ + L + + +++ S RL + A ++ G
Sbjct: 6 LETLEYGKIKEQLAKYLTTDRGRQ--IVDLLTPSPSFETVSQRLAQTADGADIVRLKGEI 63
Query: 113 SLDLTGVDLSLVKSAIREVR-RASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ L+ + ++ +R + L E + LL+ + + R E+ L
Sbjct: 64 PIP----KLADIAPYMKRLRIENASLSGTELSHITKLLRAVQVVTEFFRGLAAEEVTL-- 117
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ +P ++ +L + + K ++ VDEDG I D AS L+ R + + + M
Sbjct: 118 KSVP--SIVDRLTLMPEVTKRMVASVDEDGRILDGASSQLRSIRRTIAATQSNIRSKMGK 175
Query: 232 LIRNENNESLFLEVSSIH-GRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
I+ + + L + ++ GR + A+ + F G++ S+SG +EP + V +N+
Sbjct: 176 FIKGSDAKYLSEPIITVRDGRFVLPIKAEYKQRFGGIIHDQSASGQTLYVEPNNVVEMNN 235
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
+L++ + + +L LT ++ DE+ ++ + QLD VNA+A ++ + G P
Sbjct: 236 QLRRDQLAERAEVRRILAELTNLIRPHRDELLANMDLVGQLDFVNAKAKFAHATGSVMPK 295
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
+ P+++ I L KA HPL+ + Q D+E
Sbjct: 296 VS-PKNV---------------------INLRKARHPLI-----PRDQVVANDIE----- 323
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
+ + +++TGPNTGGK
Sbjct: 324 ------------------------------------------LGDQYNTIIVTGPNTGGK 341
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
TI +KTVGL +M +SGL I ++E +++ FD+VFADIGDEQS+ +LSTFS H+ I +
Sbjct: 342 TITIKTVGLLQLMGQSGLFITANEDSQIGVFDNVFADIGDEQSIEANLSTFSSHMDNIIS 401
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I+ Q++ SLVLLDE+GAGT+P EG AL M++++AF + G L IATTH+ ELK Y+
Sbjct: 402 ILKQTSKDSLVLLDELGAGTDPKEGAALAMAIIDAFHQIGGEL-IATTHYPELKAFAYNR 460
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
NA MEFD L+PTY+ L G+PG+S+A+NIA +LG+P ++ AR + + +IN
Sbjct: 461 QGIINASMEFDVETLQPTYRFLLGIPGQSNALNIASKLGMPAAIIDQARAFTDSENQDIN 520
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+I E+ T + H+ + L + L + R L+H +F K + +
Sbjct: 521 NMIEEL----TAQTKRAHDE------ADELDQQLKESTR--LQHDLQDKFTKYESQKE-- 566
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
LV ++ QQ +A+ + L +Q KV ++ L +
Sbjct: 567 ----RLVEQAKQQANQVVEEAKKKADRIIDDLHQKQAQ---VGKVAVKENELID--AKGA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
++++E +A S + + + K P GD V V S+G++GT+++ + + VQ
Sbjct: 618 LNQLE---SAPSLTKNKVLRKEKAKHDFHP--GDDVLVKSYGQQGTLLRKDKN-HTWDVQ 671
Query: 829 VGNMKWIMKFTDI 841
+G +K ++ +D+
Sbjct: 672 IGILKMQIEESDL 684
>gi|225574101|ref|ZP_03782712.1| hypothetical protein RUMHYD_02166 [Blautia hydrogenotrophica DSM
10507]
gi|225038701|gb|EEG48947.1| MutS2 family protein [Blautia hydrogenotrophica DSM 10507]
Length = 793
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 185/625 (29%), Positives = 295/625 (47%), Gaps = 124/625 (19%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREAT--------LTQLWSINQTYQDSLRLLDETNAA 103
++L+ LE+DK+ +++ A + +G+ L Q+ ++ +D+L L
Sbjct: 4 KALKALEYDKIIDQLTAKASSPMGKNLCKDLKPCRDLEQIQTMQTQTKDALSRL------ 57
Query: 104 IEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI 163
QK G+ S + ++ +I+ + S L E L + ++L+ +
Sbjct: 58 --FQK-GTLSFH----KVKDIRGSIKRLEIGSTLGIGELLDICSVLENTAK--------- 101
Query: 164 KEDADLYIRFMPLTQ-------MIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRG 216
A Y RF T+ M L L I + + + I D ASP LKQ R
Sbjct: 102 ---AKSYGRFDRETETCDSLDAMFQNLEPLTPLSSEIRRCILSEEEISDDASPGLKQVRR 158
Query: 217 QVQMLERKLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLLS-----S 270
+++ +++ ++ L+ L V ++ +GR C+ A+ +KG + S
Sbjct: 159 SMKITNDRIHSQLNSLLNGSARSYLQDGVITMRNGRYCLPVKAE---YKGQVPGMIHDQS 215
Query: 271 SSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLD 330
S+G IEP+S V LN++L+Q K E VL L+E+ + + LN +I+LD
Sbjct: 216 STGSTLFIEPMSVVKLNNDLRQLEIQEQKEIEIVLSDLSEQAAQYQEVLTDNLNILIELD 275
Query: 331 VVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQ 390
+ ARA +L + P + I L KA HPL+
Sbjct: 276 FIFARAGLALEHNASEPQF----------------------NTDGKIQLKKARHPLI--- 310
Query: 391 HKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIF 450
HK++ VPIDI
Sbjct: 311 HKKQV-------------------------------------------------VPIDIR 321
Query: 451 IARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQ 510
+ +LV+TGPNTGGKT+ LKTVGL +M +SGLHI + +++ + F+ V+ADIGDEQ
Sbjct: 322 LGDDFDLLVVTGPNTGGKTVSLKTVGLLTLMGQSGLHIPAGDHSVLSVFEEVYADIGDEQ 381
Query: 511 SLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL 570
S+ QSLSTFS H+ + + + ++T +SLVL DE+GAGT+P EG AL +++L G +
Sbjct: 382 SIEQSLSTFSSHMTNVVSFLEKATDKSLVLFDELGAGTDPTEGAALAIAILSHLHRQG-I 440
Query: 571 LTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPG 630
T+ATTH+ ELK S ENA EFD L+PTY++L GVPG+S+A I+ +LGLP
Sbjct: 441 RTMATTHYSELKVYALSTPGVENASCEFDVETLRPTYRLLIGVPGKSNAFAISSKLGLPD 500
Query: 631 IVVQNARQLYGAASAEINEVIIEME 655
+++ A++ +VI ++E
Sbjct: 501 FIIEKAKEQISEQDESFEDVISKLE 525
>gi|294506640|ref|YP_003570698.1| DNA mismatch repair protein MutS2 [Salinibacter ruber M8]
gi|294342968|emb|CBH23746.1| DNA mismatch repair protein MutS2 [Salinibacter ruber M8]
Length = 819
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 166/510 (32%), Positives = 260/510 (50%), Gaps = 71/510 (13%)
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
AD R PL L ++I ++DE+ SI+D ASP L++ R Q++ E +L
Sbjct: 121 ADAVARATPLP----------DLEETIASILDENASIRDDASPELRRLRQQIRSKEEELR 170
Query: 227 QLMDMLIRNENNESLFL-EVSSIHG-RLCIRTGADQLSFKGLLLS-----SSSGIGSVIE 279
+D +R+ E E +++ G R+ I A S KG + S+SG IE
Sbjct: 171 TTLDKALRHAVREGHATGEQATLRGGRMVIPVRA---SAKGKVEGFVHDRSASGQTVYIE 227
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
P + + LN+E+++ +++ E +L +T+ ++ + D IE+ L + Q D++ A+A ++
Sbjct: 228 PAACLELNNEVRELQSAEQAEIERILRRVTDHVRAESDAIEENLTVLAQFDLLRAKARFA 287
Query: 340 LSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAW 399
G P + + E IY + +P+L Q +
Sbjct: 288 NRLGAVVPKL--------------------NDEGHVEIY--EGRNPVL--------QLHF 317
Query: 400 KDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLV 459
++L + RR GE++ L P E+ VP+D+ + R LV
Sbjct: 318 EELGAGGATDRRAS---------GEEEA-LPPREV----------VPLDLELGADFRTLV 357
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
ITGPN GGKT+ +KTVGL +M GL + + ++ P FD + ADIGDEQS+ LSTF
Sbjct: 358 ITGPNAGGKTVTMKTVGLFSLMLAYGLPLPVAPHSSFPLFDQIVADIGDEQSIEDDLSTF 417
Query: 520 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579
S H+ + +++S +LVL+DE G GT+P EG AL ++LE E+G+ TIATTHHG
Sbjct: 418 SSHVSNLRHMLSAVGESALVLIDEAGTGTDPDEGAALAQAVLERLTEAGA-RTIATTHHG 476
Query: 580 ELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 639
LKT + + EN MEFD+ L+PT++ GVPG S A IA R+GL G ++ AR L
Sbjct: 477 TLKTYAHEAEAVENGSMEFDQETLRPTHRYQEGVPGSSYAFEIARRMGLSGDLLDRARTL 536
Query: 640 YGAASAEINEVIIEMERFKTQFLEHVHEAR 669
G + +I ER + + +++AR
Sbjct: 537 AGTQKTAMENLITTFERRTQELEDELYDAR 566
>gi|385825407|ref|YP_005861749.1| mismatch repair ATPase [Lactobacillus johnsonii DPC 6026]
gi|417837023|ref|ZP_12483263.1| recombination inhibitory protein MutS2 [Lactobacillus johnsonii
pf01]
gi|329666851|gb|AEB92799.1| mismatch repair ATPase [Lactobacillus johnsonii DPC 6026]
gi|338762702|gb|EGP13969.1| recombination inhibitory protein MutS2 [Lactobacillus johnsonii
pf01]
Length = 788
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 221/793 (27%), Positives = 376/793 (47%), Gaps = 131/793 (16%)
Query: 57 LEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDL 116
LE++++ +S A T+ +E LT + S N DE +I+ + S L +
Sbjct: 9 LEYNRIIKQLSDLAITAPAKEQALTLMPSSN---------FDEVKKSIDQTRVLSNILRV 59
Query: 117 TG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
G D V+++++ ++ + L E + +L ++ +S A E+ ++ R
Sbjct: 60 KGPMPITDFKDVRASLKRLKVKANLNGEELGNIFLILSLAK--DVSQFTADLEEREIDTR 117
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
P+ + + L + L K + Q ++ DG++KD+AS L Q R +Q E + M+
Sbjct: 118 --PIEKTLKNLAIPEDLFKKLNQAIEYDGTVKDTASSKLMQLRHDIQSNETDIKNHMNDY 175
Query: 233 IRNENNESLFLEVSSIH-GRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
I ++ + L + +I GR + + + F G++ S+SG +EP + + LN+
Sbjct: 176 ISGKHTQYLSENIVTIRDGRYVLPVKQEYKNKFGGVVHDQSASGQTLFVEPQAVLVLNNR 235
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
Q A + +L+ L+E + EI+ + + QLD ++A++ + + T P
Sbjct: 236 QQNLMAQERQEIHRILIELSELAGMYQKEIKNNADALTQLDFLSAKSKLAKAMKATEP-- 293
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
L QD I L KA HPL+
Sbjct: 294 VLNQD--------------------HVIKLRKARHPLI---------------------- 311
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKT 469
P ++ VP +I + ++ITGPNTGGKT
Sbjct: 312 --------------------DPKKV----------VPNNIELGTSFDTMLITGPNTGGKT 341
Query: 470 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 529
I LKT+GL +MA++GL I + E +++ F+ ++ADIGDEQS+ QSLSTFS H+ QI I
Sbjct: 342 ITLKTLGLLQLMAQAGLFITAEEGSQLTVFNEIYADIGDEQSIEQSLSTFSSHMDQIIKI 401
Query: 530 ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589
+ T L L+DE+GAGT+P EG +L +++L+ + + + I TTH+ ELK Y+
Sbjct: 402 MKDVTEDDLALIDELGAGTDPEEGASLAIAILDDLRGAQAKIAI-TTHYPELKLYGYNRA 460
Query: 590 FFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINE 649
NA MEFD KL PTY++ G+PG+S+A IA +LG+ VV AR L ++IN+
Sbjct: 461 RTTNASMEFDLKKLAPTYRLRIGIPGQSNAFAIAHQLGMNEAVVDKARSLMNDEDSDINK 520
Query: 650 VIIEMERF--KTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
+I ER +T+ E +HE L +N+ +++ T ++ L++ ++VQK +
Sbjct: 521 MI---ERLTEQTKAAEQLHET-----LKQNVDQSV--TLKRQLQNGLDWYNQQVQKQLEK 570
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
A K+ + L +A +++ +Q R A + KV + + L
Sbjct: 571 AQ------EKADEMLAKKRQKADKIINDLEEQRR--AGGQVRTNKVIEAKGALNKL---- 618
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
+ E+ A + V++ R KR +VGD V V S+G++G + K + + E V
Sbjct: 619 ---ERENQNLAQNKVLQ------REKRRHDVSVGDTVKVLSYGQQGVITK-KLADHEFEV 668
Query: 828 QVGNMKWIMKFTD 840
Q+G +K +K TD
Sbjct: 669 QIGILK--VKVTD 679
>gi|325568915|ref|ZP_08145208.1| DNA mismatch repair protein MutS [Enterococcus casseliflavus ATCC
12755]
gi|325157953|gb|EGC70109.1| DNA mismatch repair protein MutS [Enterococcus casseliflavus ATCC
12755]
Length = 787
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 216/795 (27%), Positives = 369/795 (46%), Gaps = 124/795 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L VL ++++ + + T+ G+EA + S + S L ET AI++Q+ G
Sbjct: 6 LDVLGFEQVKSQIGQYIVTAQGKEALAKLVPSSDAQVISSW--LAETEDAIKIQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL--- 169
+ + ++ ++ + + L E V +L ++ L+ ADL
Sbjct: 64 PVP----KIENIRPQMKRIEIGADLNGVELAQVARVLSTTQELKRFF-------ADLSES 112
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I F L QL +L + + + +DEDG + D ASPAL+ R ++ ER + + +
Sbjct: 113 EIEFSRLYHWEEQLVSLPTLNRRLKEAIDEDGRVTDDASPALRGIRQSIRRAERTIRETL 172
Query: 230 DMLIRNENNESLFLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
D ++R N + L + ++ R I + G ++ SSSG IEP V
Sbjct: 173 DGIVRGGNAKYLSDTIVTMRNERYVIPVKQEYRGVFGGVVHDQSSSGQTLFIEPKQVVEQ 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L+Q + + +L L+ ++ EI I +D +NA+A +
Sbjct: 233 NNRLRQHQIAERDEITRILTELSAELAPYQREILHNAYVIGIMDFMNAKARFGKEMKAIV 292
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P I ++ ++ +A HPL+ Q+
Sbjct: 293 PAI----------------------NQDNHVFFKQARHPLIDQE---------------- 314
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
+ P+++ + + + +VITGPNTG
Sbjct: 315 ---------------------KVVPNDITI---------------GKDYQAVVITGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+GL +M ++GL IL+ E +++ F+ +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 339 GKTITLKTLGLLQIMGQAGLPILAEEESQMGIFNEIFADIGDEQSIEQSLSTFSSHMTTI 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
+++ + SLVL DE+GAGT+P EG AL +++L+ + S +ATTH+ ELK Y
Sbjct: 399 VDVLKKVDETSLVLFDELGAGTDPQEGAALAIAILDELG-AKSAYVMATTHYPELKVYGY 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA MEFD L PTY++L GVPGRS+A I++RLGLP ++ A+++ S +
Sbjct: 458 NRSNTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISKRLGLPETIIDQAKEIMDGESQD 517
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+NE+I ++E + E RH + + LH+ LE S F + +K
Sbjct: 518 LNEMIADLENRRKMTETEYLEVRHHVKEAARLHQE--------LEAAYSYFFEEREK--- 566
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A AR + A Q+ A + + ++++ + Q TKV K ++ + +
Sbjct: 567 ELAKAR----QKANQIVEEAKEESEKIIADIRKMQLAGGQ----TKV-KEHELIDARTKL 617
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
+ + + EH + V++ K + +K GD V V+S+G++G ++K + K +
Sbjct: 618 SGLQQEEH--LQKNKVLQKAKAAKTLKE------GDEVLVTSYGQRGVLLK-KAGKNQWQ 668
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K + TD+
Sbjct: 669 VQIGILKMNLPETDL 683
>gi|296331594|ref|ZP_06874063.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305675447|ref|YP_003867119.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. spizizenii str. W23]
gi|296151189|gb|EFG92069.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305413691|gb|ADM38810.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. spizizenii str. W23]
Length = 785
Score = 239 bits (609), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 228/794 (28%), Positives = 373/794 (46%), Gaps = 124/794 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA--TLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ V A +SLG+E L SI++ + L +DE +A I ++
Sbjct: 6 LSALEFHKVKEQVIEHAASSLGKEMLLELKPSASIDEI-KKQLDEVDEASAIIRLRGQAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++ A+R S L P+E + LL + ++ + ++ D+ +
Sbjct: 65 FG------GLTDIRGALRRAEIGSVLSPSEFTEISGLLYAVKQMKHFISQMAEDGVDIPL 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ Q QL L + I +D+ G + D AS L+ R Q++ LE ++ ++
Sbjct: 119 ----IHQHAEQLITLSDLERDINSCIDDHGEVLDHASETLRGIRTQLRTLESRIRDRLES 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +N
Sbjct: 175 MLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDMN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQQA+ + E +L LTE+ +E+ L + LD + A+A Y+ + T
Sbjct: 235 NSLQQAKVKEKQEIERILRVLTEQTAEHTEELFLDLRVLQTLDFIFAKARYAKAVKAT-- 292
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+P+ + + L KA HPL
Sbjct: 293 --------------KPIMND------NGFVRLKKARHPL--------------------- 311
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
L P ++ V DI + +VITGPNTGG
Sbjct: 312 ---------------------LPPDQV----------VANDIELGGDFSTIVITGPNTGG 340
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT+GL +MA+SGLHI + E ++ F+ VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 341 KTVTLKTLGLLTLMAQSGLHIPADEGSEAAVFEHVFADIGDEQSIEQSLSTFSSHMVNIV 400
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
I+ Q SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y+
Sbjct: 401 GILEQVNENSLVLFDELGAGTDPQEGAALAMSILDDVHRTNARV-LATTHYPELKAYGYN 459
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
+ NA +EFD L PTYK+L GVPGRS+A I++RLGLP ++ A+ A E+
Sbjct: 460 REGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISKRLGLPNHIIGQAKSEMTAEHNEV 519
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
+ +I +E+ K + E + E + LHK L +++I+E + +K + + +A
Sbjct: 520 DTMIASLEQSKKRAEEELSETESIRKEAEKLHKEL---QQQIIELNS----KKDKMLEEA 572
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
++A+++ + +A ++H +LR K +H + +
Sbjct: 573 E-------QQAAEKVKAAMKEAEDIIH----ELRSI-----------KEEHKSFKDHELI 610
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
K A + K +++ KR P GD V V +FG+KGT+++ + E V
Sbjct: 611 NAKKRLEGAVPTFEKSKKPEKTKTQKRDFKP--GDEVKVLTFGQKGTLLE-KTGGNEWNV 667
Query: 828 QVGNMKWIMKFTDI 841
Q+G +K +K D+
Sbjct: 668 QIGILKMKVKEKDL 681
>gi|365924477|ref|ZP_09447240.1| DNA mismatch repair protein [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420265357|ref|ZP_14767919.1| DNA mismatch repair protein [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394428189|gb|EJF00772.1| DNA mismatch repair protein [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 786
Score = 239 bits (609), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 216/786 (27%), Positives = 376/786 (47%), Gaps = 117/786 (14%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
++L+ LE+ K+ +++ F T +G E +T L + + R+ + A ++ G+
Sbjct: 4 KTLKTLEFAKVKNNLLPFISTPMG-EKQVTTLEPSSDIAEIKQRIAQTRDGADILRMKGA 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ L + +++ + + L E AV +L+ + ++ R +K D D I
Sbjct: 63 IPVP----KLLDISQSLKRLDIDASLNGKELAAVSKVLRATNEVR---RFFVKLD-DEAI 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L ++ L V + K ++ ++ DG + D AS AL R + +E +L +++
Sbjct: 115 ELASLDELAADLQVLPEVNKRLLTSIEGDGHVTDEASTALAGIRRSIAAIEGQLRDQLNV 174
Query: 232 LIRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLND 288
L+ +++ L V +I + R I + S F G++ S+SG +EP V LN+
Sbjct: 175 LVHGNSSKYLSDAVITIRNDRYVIPVKQEYRSHFGGVVHDQSASGQTVFVEPKQIVELNN 234
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
L+Q +++ + +L L++ + EI + + + D VNA+A Y+ T
Sbjct: 235 RLKQQQSNEKEEVARILRELSQLIAPYTTEIRQNVYLLGVFDFVNAKAQYAAQIKAT--- 291
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
EP+ S E +YL + +HPLL D+++A
Sbjct: 292 -------------EPLLST------ENKVYLRQVWHPLL-------------DMKAA--- 316
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
V DI + R +V+TGPNTGGK
Sbjct: 317 ------------------------------------VRNDIMLGDDYRAIVVTGPNTGGK 340
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
TI LKT+GL +M ++GL I + E +++ FD++FADIGDEQS+ QSLSTFS H+ I +
Sbjct: 341 TITLKTLGLVQLMGQAGLFIPAFEESRIGIFDNIFADIGDEQSIEQSLSTFSSHMTNIVS 400
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I+S+ +SL+L DE+GAGT+P EG AL +S+L+ + S S +ATTH+ ELK Y
Sbjct: 401 ILSEIDDKSLILFDELGAGTDPQEGAALAISILD-YVGSKSSYVMATTHYPELKAYGYER 459
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
NA MEFD LKPTY +L G+PGRS+A++I+++LGL +++ A+QL + ++N
Sbjct: 460 PQTINASMEFDIESLKPTYHLLLGIPGRSNALDISKKLGLDDVIIMQAKQLTAGQNQDLN 519
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
++I ++ + Q E E L SR LH +L K + +QR + + D A
Sbjct: 520 DMIQDLVAKRHQVEEESIELHKNLEESRKLHDDL----GKKYDEFVNQR----ENLLDNA 571
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
+ ++ A++ + +++R +A ++ K+ + L + Q T
Sbjct: 572 -------RRKGNEIVEQAAKKSEKIIAELRKMRLNAGTTIKEDKLISAKARLNALEQPTN 624
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ K + V++ R K ++ D V V S+G++G +++ + E VQ
Sbjct: 625 LKK--------NRVLR------RAKEKQILKPDDDVLVKSYGQRGVLLR-KAGNHEWEVQ 669
Query: 829 VGNMKW 834
+G +K
Sbjct: 670 LGILKM 675
>gi|282882263|ref|ZP_06290897.1| MutS2 protein [Peptoniphilus lacrimalis 315-B]
gi|281297884|gb|EFA90346.1| MutS2 protein [Peptoniphilus lacrimalis 315-B]
Length = 788
Score = 239 bits (609), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 223/798 (27%), Positives = 376/798 (47%), Gaps = 140/798 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM-QKHG 110
+++R LE +K+ + FA ++ ++ I+ Y++ + L ET+ A+ + K G
Sbjct: 5 KAIRTLELNKILDKLKYFASANITKD--YIDEIEISTDYEEINKRLKETSEAVSLIVKKG 62
Query: 111 SCSLDLTGVDLSLVKSAIREV-RRAS---PLRPNEALAVVALLQFSETLQLSLRAAIKED 166
L +++ ++R+V RRAS L P+ + + L+ S L+ L+ K+D
Sbjct: 63 EPPL------FAII--SLRDVLRRASLGGILNPSNLIDISNFLRVSRLLKNYLK---KDD 111
Query: 167 ADLYIRFMPLTQ-MIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
D + + + +I L++NR+L SI + + + + D AS L R + L+ L
Sbjct: 112 KDENTENISIIKDLIDNLYINRNLEDSINKKIISEDQVADDASRKLLSIRRNIVKLQGSL 171
Query: 226 YQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
+ ++ +++++ + ++ GR I + S KGL+ S SG IEP+
Sbjct: 172 REKLEKILQSQKDYLQDCIITMREGRYVIPVRNENKSKVKGLVHDISGSGQTVYIEPIEV 231
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGII--QLDVVNARATYSLS 341
V N+E++ + + E +L L+E++ IE N +I ++D + A+ SL
Sbjct: 232 VNANNEIKTLKIEEKEEVEKILKELSEEVAEVSTSIES--NELILREIDFIFAKGKLSLD 289
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
G P + + I L AYHPLL
Sbjct: 290 MGANLPKV----------------------NKNRYIDLKNAYHPLL-------------- 313
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
RK+ VPI+I+I + L+IT
Sbjct: 314 ---------NRKI-----------------------------AVPINIYIGKDFTSLIIT 335
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ LKT+G+ +MA+ GLHI + E ++V F+++FADIGDEQS+ Q+LSTFS
Sbjct: 336 GPNTGGKTVTLKTLGILQLMAQYGLHIPADEDSQVGIFNNLFADIGDEQSIEQNLSTFSS 395
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+ I I+ + SLVL DE+GAGT+P EG AL S+++ E + I+TTH+ +L
Sbjct: 396 HMTNIVEILEKVDEDSLVLFDELGAGTDPTEGAALARSIMDFMLER-KIRCISTTHYNQL 454
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K + + +NA MEFD L PTYK+L G+PG+S+A I++RLGL ++ +AR L
Sbjct: 455 KIYALTTEGVKNASMEFDINTLSPTYKLLIGLPGKSNAFEISKRLGLSQKIINHARDLIS 514
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
+ E +V+ +E+ +T+ R F L++ HK+ L + LE ++
Sbjct: 515 QENIEFEKVLASIEKDRTK-------TREFKELAKR-HKSDLEKQNARLEI-------EL 559
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP--SASQSLHCTKVG---KN 756
+KI ++ A+++ S + L+ L+ S+ Q+ + G +N
Sbjct: 560 KKIENSKEKILKEAKDEARRILLSTKENVDLILDEISSLKAEISSDQARRIQESGDLLRN 619
Query: 757 QHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVI 816
N ++ ++K + P ++DIK VGD V +SFG TV+
Sbjct: 620 SIRKVDNDKKFVIEKAKKP-------IEDIK------------VGDQVR-NSFGNISTVL 659
Query: 817 KVEPSKEEIVVQVGNMKW 834
++ SK I +Q G MK
Sbjct: 660 ELPDSKGNIYIQSGIMKM 677
>gi|334183641|ref|NP_001185315.1| DNA mismatch repair protein MutS2 [Arabidopsis thaliana]
gi|6227005|gb|AAF06041.1|AC009360_6 Contains similarity to gb|D90908 DNA mismatch repair protein MutS2
from Synechocystis sp. and is a member of PF|00488 Muts
family of mismatch repair proteins [Arabidopsis
thaliana]
gi|332196205|gb|AEE34326.1| DNA mismatch repair protein MutS2 [Arabidopsis thaliana]
Length = 876
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 245/831 (29%), Positives = 401/831 (48%), Gaps = 133/831 (16%)
Query: 37 VAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL 96
+ + SDD +S V ++L VLEW LC+ +S FA T++G AT + + ++S L
Sbjct: 35 IRAASSDDSQS-VENQTLEVLEWRALCNQLSPFASTTMGLSATKNAEIPVGNSPEESRNL 93
Query: 97 LDETNAAI---EMQKHGSCSL----DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALL 149
L+ET+AA+ EM K L DL+ + V + VR +R L
Sbjct: 94 LNETSAALAAMEMMKSRGLGLSEIQDLSDIVERAVSGQLLTVRELCTVRS-------TLT 146
Query: 150 QFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGS-IKDSAS 208
+ T Q +AAI ++ R PL ++ +L + I +D + + I D AS
Sbjct: 147 AATSTFQKLRKAAISDN-----RVTPLVDILQGCDFKDTLQQKISFCIDCNMTMILDRAS 201
Query: 209 PALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE-------VSSIHGRLC--IRTGAD 259
L+ R + R+ + +D L++ + + +FL ++ R+C IR
Sbjct: 202 EDLEIIRSE----RRRNMENLDSLLKKISTK-IFLAGGINKPLITQRRSRMCVAIRATHK 256
Query: 260 QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLA-LTEKMQVDLD 317
L G++LS SSS IEP AV LN+ ++ A+ KAEE +L+ LT ++ +
Sbjct: 257 SLLPGGVVLSVSSSRATCFIEPKEAVELNN-MEVRHANSEKAEEMAILSILTSEVVMAQR 315
Query: 318 EIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTI 377
EI +L+ I++LD+ ARA+++ G PN VTS+ + + +
Sbjct: 316 EILHLLDRILELDIAFARASHANWINGVYPN---------------VTSEHTKTP-GLAV 359
Query: 378 YLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVS 437
+ A HPLLL L S N GG+
Sbjct: 360 DIDSAQHPLLL----------GSVLGSPN---------GGDI------------------ 382
Query: 438 ALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVP 497
PVP+DI + +V+VI+GPNTGGKT LKT+GL +M+KSG+++ + ++P
Sbjct: 383 -----FPVPVDIKVESSAKVVVISGPNTGGKTALLKTLGLLSLMSKSGMYLPAKNCPRLP 437
Query: 498 WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557
WFD + ADIGD QSL QSLSTFSGH+ +I I+ ++ SLVLLDEI +GT+P EG AL
Sbjct: 438 WFDLILADIGDPQSLEQSLSTFSGHISRIRQILDIASENSLVLLDEICSGTDPSEGVALA 497
Query: 558 MSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRS 617
S+L+ + ++ + + +TH+G+L LK + F+NA MEF L+PT+++LWG G S
Sbjct: 498 TSILQ-YIKNRVNVAVVSTHYGDLSRLKDNEPRFQNAAMEFSMETLQPTFRVLWGSTGLS 556
Query: 618 SAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLML--- 674
+A+ +A+ +G +++NA + + E ++ER K + + E R+ L L
Sbjct: 557 NALRVAKSIGFNKRILENAHKWTEKLNPE-----QDVER-KGSLFQSLMEERNKLKLQAT 610
Query: 675 -SRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLV 733
+ H++L+ + LEH + D R+L+ K Q++ + A+S
Sbjct: 611 KTAAFHRDLMNLYHE-LEH----------ESHDLDKRERALLKKETQKVQEDLNSAKS-- 657
Query: 734 HKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVK 793
+ ++L L T+ + ++ T + V A + D +
Sbjct: 658 --KMERLVAEFESQLEITQADQYNSLILK-----TEEAVAEIIEACCPMDPDSLEEEYSD 710
Query: 794 RTELPNVGDLVHVSSFGKK-GTVIKVEPSKEE--IVVQVGNMKWIMKFTDI 841
+ P G+ V V+ G K GTV++ EP ++ ++VQ G ++ +K DI
Sbjct: 711 YS--PQAGEKVLVTGLGDKLGTVVE-EPGDDDDTVLVQHGKIRVRIKKKDI 758
>gi|291562931|emb|CBL41747.1| MutS2 family protein [butyrate-producing bacterium SS3/4]
Length = 798
Score = 238 bits (608), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 217/811 (26%), Positives = 374/811 (46%), Gaps = 156/811 (19%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREAT--LTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L+ LE+ K+ ++ A + G++ LT + N+ Q D A +++ GS
Sbjct: 6 LKTLEYYKIIDRLTDCAASEPGKKMCRELTPSSNFNEIVQTQTETAD---AVTRVRQKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRA-SPLRPNEALAVVALLQFSETLQLSLRAA-------- 162
SL + +R+VR + L +L++ LL S L + RA
Sbjct: 63 LSL-----------AGVRDVRDSLKRLEIGSSLSITELLSVSGLLTCAARAKNYGRHPEN 111
Query: 163 --IKEDA--DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQV 218
+ +D+ +++ PLT VN + + I+ ED I D ASP L R Q+
Sbjct: 112 MELPDDSLDEMFRTLEPLTN------VNSEITRCIL---GED-EIADDASPGLHHVRRQM 161
Query: 219 QMLERKLYQLMDMLIRNENNESLFLEVSSI---HGRLCIRTGADQLS-FKGLLLS-SSSG 273
++ K++ ++ ++ N+ L+ + I GR C+ A+ S F G++ S++G
Sbjct: 162 KITADKVHTQLNSIL---NSSRTMLQDAVITMRDGRYCLPVRAEYKSQFAGMVHDQSATG 218
Query: 274 IGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVN 333
IEP++ + LN+EL++ K E +L AL+ ++ ++ I + +LD +
Sbjct: 219 STLFIEPMAIIKLNNELRELELKEQKEIEMILAALSTELVPYIEPITTDFEILTKLDFIF 278
Query: 334 ARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQ 393
A+A S + + P R+ I++ HPL
Sbjct: 279 AKAALSRIYNCSMPKF----------------------NRKGYIHIKDGRHPL------- 309
Query: 394 KTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIAR 453
L P ++ VPI+I++ +
Sbjct: 310 -----------------------------------LDPKKV----------VPINIWMGK 324
Query: 454 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 513
+L++TGPNTGGKT+ LKTVGL +M +SGL I + + +++ FD VFADIGDEQS+
Sbjct: 325 DFDLLIVTGPNTGGKTVSLKTVGLFTLMGQSGLQIPAFDGSELSVFDEVFADIGDEQSIE 384
Query: 514 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 573
QSLSTFS H+ I I++Q+ S+SL L DE+ AGT+P EG AL +S+L +F + T+
Sbjct: 385 QSLSTFSAHMTNIVKILNQADSRSLCLFDELCAGTDPTEGAALAISIL-SFLHNMKCRTM 443
Query: 574 ATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVV 633
ATTH+ ELK S ENAC EF+ L+PTYK+L G+PG+S+A I+ +LGLP ++
Sbjct: 444 ATTHYSELKVFALSTPGVENACCEFNVETLRPTYKLLIGIPGKSNAFAISRQLGLPDYII 503
Query: 634 QNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHC 693
+A+ + +++ +E+ + + E + L KN+ + ++ E
Sbjct: 504 DDAKTHLESNDEAFEDLLANLEQSRVTIEKEREEIASYKEEISRLKKNIEQKEERLDE-- 561
Query: 694 ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKV 753
RK + + +A ++ AQ++ A + + +L S+ V
Sbjct: 562 -----RKEKLLKNA--------NEEAQRILREAKETADQTIRNINKLAASSG-------V 601
Query: 754 GKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP---NVGDLVHVSSFG 810
GK + ++ +DKV+ + +K + K+T P +GD V V +
Sbjct: 602 GKELEAERTKLRE-KLDKVDKSLS--------LKNNKGPKKTISPKKLKIGDGVKVLTMN 652
Query: 811 KKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
KGTV + +K ++ VQ+G ++ ++ D+
Sbjct: 653 LKGTVSTLPNAKGDLYVQMGILRSLVNIKDL 683
>gi|386759420|ref|YP_006232636.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. JS]
gi|384932702|gb|AFI29380.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. JS]
Length = 785
Score = 238 bits (608), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 232/795 (29%), Positives = 373/795 (46%), Gaps = 126/795 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQL---WSINQTYQDSLRLLDETNAAIEMQKHG 110
L LE+ K+ V A +SLG+E L QL SI++ + L +DE +A I ++
Sbjct: 6 LSALEFHKVKEQVIEHAASSLGKE-MLLQLKPSASIDEI-KKQLDEVDEASAIIRLRGRA 63
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
L ++ A+R S L P+E + LL + ++ + ++ D+
Sbjct: 64 PFG------GLVDIRGALRRAEIGSVLSPSEFTEISGLLYAVKQMKHFITQMAEDGVDIP 117
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+ + Q QL L + I +D+ G + D AS L+ R Q++ LE ++ ++
Sbjct: 118 L----IHQHAEQLITLSDLERDINSCIDDHGEVLDHASEKLRGIRTQLRTLESRIRDRLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +
Sbjct: 174 SMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ LQQA+ + E +L LTEK +E+ L + LD + A+A Y+ + T
Sbjct: 234 NNSLQQAKVKEKQEIERILRVLTEKTAEHTEELFLDLQVLQTLDFIFAKARYAKAVKAT- 292
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
+P+ + I L KA HPLL
Sbjct: 293 ---------------KPMMNDTG------FIRLKKARHPLL------------------- 312
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
P ++ V DI + +VITGPNTG
Sbjct: 313 -----------------------PPDQV----------VANDIELGGDFSTIVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA+SGLHI + E ++ F+ VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTVTLKTLGLLTLMAQSGLHIPADEGSEAAVFEHVFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ Q SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y
Sbjct: 400 VGILEQVNENSLVLFDELGAGTDPQEGAALAMSILDDVHRTNARV-LATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A I++RLGLP ++ A+ A E
Sbjct: 459 NREGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISKRLGLPDHIIGQAKSEMTAEHNE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++ +I +E+ K + E + E + LHK L +++I+E + +K + + +
Sbjct: 519 VDTMIASLEQSKKRAEEELSETESIRKEAEKLHKEL---QQQIIELNS----KKDKMLEE 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A ++A ++ + +A ++H +LR K +H + +
Sbjct: 572 AE-------QQAADKVKAAMKEAEDIIH----ELRSI-----------KEEHKSFKDHEL 609
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
K A + K +++ KR P GD V V +FG+KGT+++ + E
Sbjct: 610 INAKKRLEGAVPTFEKSKKPEKTKTQKRDFKP--GDEVKVLTFGQKGTLLE-KTGGNEWN 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K +K D+
Sbjct: 667 VQIGILKMKVKEKDL 681
>gi|420263850|ref|ZP_14766486.1| DNA mismatch repair protein MutS [Enterococcus sp. C1]
gi|394769292|gb|EJF49155.1| DNA mismatch repair protein MutS [Enterococcus sp. C1]
Length = 787
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 216/795 (27%), Positives = 369/795 (46%), Gaps = 124/795 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L VL ++++ + + T+ G+EA + S + S L ET AI++Q+ G
Sbjct: 6 LDVLGFEQVKSQIGQYIVTAQGKEALAKLVPSSDAQVISSW--LAETEDAIKIQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL--- 169
+ + ++ ++ + + L E V +L ++ L+ ADL
Sbjct: 64 PVP----KIENIRPQMKRIEIGADLNGVELAQVARVLSTTQELKRFF-------ADLSES 112
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I F L QL +L + + + +DEDG + D ASPAL+ R ++ ER + + +
Sbjct: 113 EIEFSRLYHWEEQLVSLPTLNRRLKEAIDEDGRVTDDASPALRGIRQSIRRAERTIRETL 172
Query: 230 DMLIRNENNESLFLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
D ++R N + L + ++ R I + G ++ SSSG IEP V
Sbjct: 173 DGIVRGGNAKYLSDTIVTMRNERYVIPVKQEYRGVFGGVVHDQSSSGQTLFIEPKQVVEQ 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L+Q + + +L L+ ++ EI I +D +NA+A +
Sbjct: 233 NNRLRQHQIAERDEITRILAELSAELAPYQREILHNAYVIGIMDFMNAKARFGKEMKAIV 292
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P I ++ ++ +A HPL+ Q+
Sbjct: 293 PAI----------------------NQDNHVFFKQARHPLIDQE---------------- 314
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
+ P+++ + + + +VITGPNTG
Sbjct: 315 ---------------------KVVPNDITI---------------GKDYQAVVITGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+GL +M ++GL IL+ E +++ F+ +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 339 GKTITLKTLGLLQIMGQAGLPILAEEESQMGIFNEIFADIGDEQSIEQSLSTFSSHMTTI 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
+++ + SLVL DE+GAGT+P EG AL +++L+ + S +ATTH+ ELK Y
Sbjct: 399 VDVLKKIDETSLVLFDELGAGTDPQEGAALAIAILDELG-AKSAYVMATTHYPELKVYGY 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA MEFD L PTY++L GVPGRS+A I++RLGLP ++ A+++ S +
Sbjct: 458 NRSNTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISKRLGLPETIIDQAKEIMDGESQD 517
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+NE+I ++E + E RH + + LH+ LE S F + +K
Sbjct: 518 LNEMIADLENRRKMTETEYLEVRHHVKEAARLHQE--------LEAAYSYFFEEREK--- 566
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A AR + A Q+ A + + ++++ + Q TKV K ++ + +
Sbjct: 567 ELAKAR----QKANQIVEEAKEESEKIIADIRKMQLAGGQ----TKV-KEHELIDARTKL 617
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
+ + + EH + V++ K + +K GD V V+S+G++G ++K + K +
Sbjct: 618 SGLQQEEH--LQKNKVLQKAKAAKTLKE------GDEVLVTSYGQRGVLLK-KAGKNQWQ 668
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K + TD+
Sbjct: 669 VQIGILKMNLPETDL 683
>gi|306490800|gb|ADM94921.1| mismatch repair ATPase [uncultured candidate division JS1
bacterium]
Length = 790
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 165/478 (34%), Positives = 244/478 (51%), Gaps = 80/478 (16%)
Query: 187 RSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE-- 244
R L K+I ++E+ I D ASP LK+ R ++ +ERK+ + ++ +I++ N + +
Sbjct: 130 RILEKTIKDSINEELQIVDDASPLLKKIRQKIHSIERKIKEKLENIIKDPQNRLIIQDDI 189
Query: 245 VSSIHGRLCIRTGA-DQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEE 302
++ GR I ++ F G++ S SG+ +EPL V N+EL++ + E
Sbjct: 190 ITIRQGRYVIPVKQQEKGKFPGVIHDKSESGVTVFMEPLPVVEFNNELRELYQDEKQEEY 249
Query: 303 DVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHE 362
+L LT + + +EI + +LD +NA+A S+ P I
Sbjct: 250 RILQKLTALVGQNGEEILYSYQILGELDFINAKAKLSIKMKAVEPQI------------- 296
Query: 363 PVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARK 422
+ I+L KA HPLL K + D+E
Sbjct: 297 ---------NEQGIIHLYKARHPLL------KNKVVPIDIEL------------------ 323
Query: 423 GEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMA 482
GEK +I I ITGPNTGGKT+ LKTVGL +MA
Sbjct: 324 GEK---------------------FEILI--------ITGPNTGGKTVTLKTVGLLTLMA 354
Query: 483 KSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLD 542
+SGLHI ++V F +FADIGDEQS+ QSLSTFS H++ I +I+ ++ SLVLLD
Sbjct: 355 QSGLHIPVEVDSEVAIFKKIFADIGDEQSMEQSLSTFSAHIQNIIHILEEADQYSLVLLD 414
Query: 543 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 602
E+GAGT+P EG+AL M++L+ G+ + ++TTHH LK Y + NA +EFDE
Sbjct: 415 ELGAGTDPSEGSALAMAILDLLKSKGAKV-LSTTHHDSLKAYAYLTEGVMNAKVEFDEKT 473
Query: 603 LKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQ 660
LKPTYKI G+PG+S A +A+RLGLP +V+ A Q ++ +I +ME+ K Q
Sbjct: 474 LKPTYKISIGLPGKSCAFAVAQRLGLPEMVLDKAEQYLVKEKLDLENLIRKMEKDKDQ 531
>gi|406026859|ref|YP_006725691.1| DNA mismatch repair protein MutS [Lactobacillus buchneri CD034]
gi|405125348|gb|AFS00109.1| DNA mismatch repair protein MutS [Lactobacillus buchneri CD034]
Length = 788
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 214/793 (26%), Positives = 378/793 (47%), Gaps = 119/793 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQD-SLRLLDETNAAIEMQKHGSC 112
L LE+ K+ ++ + T GR+ + L + + +++ S RL + A ++ G
Sbjct: 6 LETLEYGKIKEQLAKYLTTDRGRQ--IVDLLTPSPSFETVSQRLAQTADGADIVRLKGEI 63
Query: 113 SLDLTGVDLSLVKSAIREVR-RASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ L+ + ++ +R + L E + LL+ + + R E+ L
Sbjct: 64 PIP----KLADIAPYMKRLRIENASLSGTELSHITKLLRAVQVVTEFFRGLAAEEVTL-- 117
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ +P ++ +L + + K ++ VDEDG I D AS L+ R + + + M
Sbjct: 118 KSVP--SIVDRLTLMPEVTKRMVASVDEDGRILDGASSQLRSIRRTIAATQSNIRSKMGK 175
Query: 232 LIRNENNESLFLEVSSIH-GRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
I+ + + L + ++ GR + A+ + F G++ S+SG +EP + V +N+
Sbjct: 176 FIKGSDAKYLSEPIITVRDGRFVLPIKAEYKQRFGGIIHDQSASGQTLYVEPNNVVEMNN 235
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
+L++ + + +L LT ++ DE+ ++ + QLD VNA+A ++ + G P
Sbjct: 236 QLRRDQLAERAEVRRILAELTNLIRPHRDELLANMDLVGQLDFVNAKAKFAHATGSVMPK 295
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
+ P+++ I L KA HPL+ + Q D+E
Sbjct: 296 VS-PKNV---------------------INLRKARHPLI-----PRDQVVANDIE----- 323
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
+ + +++TGPNTGGK
Sbjct: 324 ------------------------------------------LGDQYNTIIVTGPNTGGK 341
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
TI +KTVGL +M +SGL I ++E +++ FD+VFADIGDEQS+ +LSTFS H+ I +
Sbjct: 342 TITIKTVGLLQLMGQSGLFITANEDSQIGVFDNVFADIGDEQSIEANLSTFSSHMDNIIS 401
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I+ Q++ SLVLLDE+GAGT+P EG AL M++++AF + G L IATTH+ ELK Y+
Sbjct: 402 ILKQTSKDSLVLLDELGAGTDPKEGAALAMAIIDAFHQIGGEL-IATTHYPELKAFAYNR 460
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
NA MEFD L+PTY+ L G+PG+S+A+NIA +LG+P ++ AR + + +IN
Sbjct: 461 QGIINASMEFDVETLQPTYRFLLGIPGQSNALNIASKLGMPEAIIDQARAFTDSENQDIN 520
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+I E+ T + H+ + L + L + R L+H +F K + +
Sbjct: 521 NMIEEL----TAQTKRAHDE------ADELDQQLKESTR--LQHDLQDKFTKYESQKE-- 566
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
LV ++ QQ +A+ + L +Q KV ++ L +
Sbjct: 567 ----RLVEQAKQQANQVVEEAKKKADRIIDDLHQKQAQ---VGKVAVKENELID--AKGA 617
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
++++E +A S + + + K P GD V V S+G++GT+++ + + VQ
Sbjct: 618 LNQLE---SAPSLTKNKVLRKEKAKHDFHP--GDDVLVKSYGQQGTLLRKDKN-HTWDVQ 671
Query: 829 VGNMKWIMKFTDI 841
+G +K ++ +D+
Sbjct: 672 IGILKMQIEESDL 684
>gi|295696872|ref|YP_003590110.1| MutS2 family protein [Kyrpidia tusciae DSM 2912]
gi|295412474|gb|ADG06966.1| MutS2 family protein [Kyrpidia tusciae DSM 2912]
Length = 783
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 150/394 (38%), Positives = 221/394 (56%), Gaps = 42/394 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+D+ I + L+ITGPNTGGKT+ LKT GL MA++GL I ++E +++ F+ +FA
Sbjct: 317 VPVDVLIGDEYHALIITGPNTGGKTVVLKTAGLLTCMAQAGLFIPAAEGSELSVFERIFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFSGH+K I I+ Q +SLVLLDEIGAGT+P EG AL ++L+ F
Sbjct: 377 DIGDEQSIEQSLSTFSGHMKHIIEILDQVNERSLVLLDEIGAGTDPAEGAALAEAILQFF 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ G + TIATTH+G+LK Y+ NA +EFD L+PTY++L GVPGRS+A+ +A
Sbjct: 437 VDRG-IRTIATTHYGDLKAFAYTTPGVMNASVEFDPETLRPTYRLLIGVPGRSNALAVAA 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL ++ AR GA + ++I ++E + Q E AR L R + R
Sbjct: 496 RLGLGQEILDRARHRLGADDVRVEDMIRQLETARNQAREEADRAR----LDR---EEASR 548
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
R++ Q+ + A AR +V ++ +++ + R L + L+
Sbjct: 549 LRQQWESEVRRWEAEADQRTAQAEERARRIVLQAEREVKDVLEELRRLSREDRSSLK--- 605
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPA-----TASSSVVKDIKQSPRVKRTELPN 799
+H T Q+ +D+V+ PA SS +D P
Sbjct: 606 ------------EHQFTELRQR--LDRVK-PAFRYGRRVPSSTGEDFG---------TPG 641
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
GD V V SFG+KGTV++++ +E +VQ+G +K
Sbjct: 642 PGDAVEVVSFGQKGTVLEIQ--GKEALVQIGALK 673
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 153/343 (44%), Gaps = 22/343 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDS-LRLLDETNAAIEMQKHGS 111
+LRVLE++K+C ++ A+T +G+ L L S ++ S R DE A + G
Sbjct: 5 TLRVLEFEKICQILADHAQTDMGKTLALELLPSSDEEEVRSWCRETDEAQAWDRLA--GG 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
SL + V ++R R L P + A L++ +Q SL E
Sbjct: 63 VSLQ----GATDVTESVRRAARGGVLSPEQLYATAELMRVGRRVQRSL-----EQVQSKA 113
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
R L + + +L K+I + V EDG+I D AS L R + + L ++ +D
Sbjct: 114 RTPQLQALASGIPELPALEKAIRESVGEDGAILDGASSELAALRRRKRALADRIRGALDE 173
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLN 287
LIRN N + E V+ GR C+ + + SF+G++ S+SG IEP + VPL
Sbjct: 174 LIRNPNTQKYLQEPLVTVRDGRYCVPVRVEFKNSFRGIVHDQSASGQTWFIEPAAIVPLG 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+EL+ A + E +L+ L+ + + + K + + +LD A++ + SP
Sbjct: 234 NELRGLEAQEEREIERILVRLSALVGQEESGLSKAVECLGRLDFALAKSRLAQQMDAVSP 293
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSER--EWTIYLPKAYHPLLL 388
+ ++ P+ K ER + + YH L++
Sbjct: 294 HFVGGGKLRLRRCRHPLIPK----ERVVPVDVLIGDEYHALII 332
>gi|418614027|ref|ZP_13177017.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU118]
gi|374821896|gb|EHR85937.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU118]
Length = 782
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 226/796 (28%), Positives = 371/796 (46%), Gaps = 124/796 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL-LDETNAAIEM-QKH 109
++L VLE++K+ V+ + LGRE + N D++ ++ET+ ++ KH
Sbjct: 4 KTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNF---DTVEFQMNETDEISQIYNKH 60
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
SL +G L+ V + L E + L+Q + ++ED +
Sbjct: 61 RLPSL--SG--LAKVSPLVHRASIGGVLNVAELNRIKRLVQVQNQFKTFYNQMLEEDEE- 115
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+++ L + L + L K I + D + D AS L+ R ++ +++ Q +
Sbjct: 116 -VKYPILHDKMNHLPILTDLFKEINETCDAH-DLFDHASYTLQSIRSKISRTNQRIRQNL 173
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
D +++N+ N+ + V+ + R I A+ + F G++ S+SG IEP S V
Sbjct: 174 DRIVKNQGNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVE 233
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
+N+++ + R E +L LT + + D + + + Q+D + A+A Y+ + GT
Sbjct: 234 MNNQISRLRNDEAVERERILTELTGFVSAEADALLIAESVMGQIDFLIAKARYARTIKGT 293
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
P + + TIYLP A+HPLL KD A
Sbjct: 294 KPTF----------------------KEDRTIYLPNAFHPLL-----------DKDTVVA 320
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
NT +E V ++ITGPNT
Sbjct: 321 NT-------------------------------IEFIDDV----------ETVIITGPNT 339
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K
Sbjct: 340 GGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKN 399
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH+ ELK
Sbjct: 400 IVEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTHYPELKAYS 458
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G
Sbjct: 459 YNREGVMNASVEFDVETLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQ 518
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKIS 705
EIN +I +E+ + + E + ++ H L + ++ Q + K +
Sbjct: 519 EINAMIESLEQNSKRVDQQRIELDRLVREAQQTHDALSK------QYQQYQNYEK--SLM 570
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQ 765
D A + A Q SA++ + K + LR + +H L +
Sbjct: 571 DEAK-------EKANQRVKSATKEADEILKELRNLRDHKGAEV-------KEHELIDKKK 616
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEI 825
Q D+ E VK IKQ + K+ + + GD V V S+G+K + +EE
Sbjct: 617 QLD-DQYE---------VKSIKQHVQKKKYDTIHTGDEVKVLSYGQK-GEVLELVGEEEA 665
Query: 826 VVQVGNMKWIMKFTDI 841
VVQ+G +K + D+
Sbjct: 666 VVQMGIIKMKLPIEDL 681
>gi|257877500|ref|ZP_05657153.1| DNA mismatch repair protein MutS [Enterococcus casseliflavus EC20]
gi|257811666|gb|EEV40486.1| DNA mismatch repair protein MutS [Enterococcus casseliflavus EC20]
Length = 787
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 216/795 (27%), Positives = 368/795 (46%), Gaps = 124/795 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L VL ++++ + + T+ G+EA + S + S L ET AI++Q+ G
Sbjct: 6 LDVLGFEQVKSQIGQYIVTAQGKEALAKLVPSSDVQVISSW--LAETEDAIKIQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL--- 169
+ + ++ ++ + + L E V +L ++ L+ ADL
Sbjct: 64 PVP----KIENIRPQMKRIEIGADLNGIELAQVARVLSTTQELKRFF-------ADLSES 112
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I F L QL +L + + + +DEDG + D ASPAL+ R ++ ER + + +
Sbjct: 113 EIEFSRLYHWEEQLVSLPTLNRRLKEAIDEDGRVTDDASPALRGIRQSIRRAERTIRETL 172
Query: 230 DMLIRNENNESLFLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
D ++R N + L + ++ R I + G ++ SSSG IEP V
Sbjct: 173 DGIVRGGNAKYLSDTIVTMRNERYVIPVKQEYRGVFGGVVHDQSSSGQTLFIEPKQVVEQ 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L+Q + + +L L+ ++ EI I +D +NA+A +
Sbjct: 233 NNRLRQHQIAERDEITRILAELSAELAPYQREILHNAYVIGIMDFMNAKARFGKEMKAIV 292
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P I ++ ++ +A HPL+ Q+
Sbjct: 293 PAI----------------------NQDNHVFFKQARHPLIDQE---------------- 314
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
+ P+++ + + + +VITGPNTG
Sbjct: 315 ---------------------KVVPNDITI---------------GKDYQAVVITGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+GL +M ++GL IL+ E +++ F+ +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 339 GKTITLKTLGLLQIMGQAGLPILAEEESQMGVFNEIFADIGDEQSIEQSLSTFSSHMTTI 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
++ + SLVL DE+GAGT+P EG AL +++L+ + S +ATTH+ ELK Y
Sbjct: 399 VEVLKKVDETSLVLFDELGAGTDPQEGAALAIAILDELG-AKSAYVMATTHYPELKVYGY 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA MEFD L PTY++L GVPGRS+A I++RLGLP ++ A+++ S +
Sbjct: 458 NRSNTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISKRLGLPDTIIDQAKEIMDGESQD 517
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+NE+I ++E + E RH + + LH+ LE S F + +K
Sbjct: 518 LNEMIADLENRRKMTETEYLEVRHHVKEAARLHQE--------LEAAYSYFFEEREK--- 566
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A AR + A Q+ A + + ++++ + Q TKV K ++ + +
Sbjct: 567 ELAKAR----QKANQIVEEAKEESEKIIADIRKMQLAGGQ----TKV-KEHELIDARTKL 617
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
+ + + EH + V++ K + +K GD V V+S+G++G ++K + K +
Sbjct: 618 SGLQQEEH--LQKNKVLQKAKAAKTLKE------GDEVLVTSYGQRGVLLK-KAGKNQWQ 668
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K + TD+
Sbjct: 669 VQIGILKMNLPETDL 683
>gi|257867419|ref|ZP_05647072.1| DNA mismatch repair protein MutS [Enterococcus casseliflavus EC30]
gi|257873749|ref|ZP_05653402.1| DNA mismatch repair protein MutS [Enterococcus casseliflavus EC10]
gi|257801475|gb|EEV30405.1| DNA mismatch repair protein MutS [Enterococcus casseliflavus EC30]
gi|257807913|gb|EEV36735.1| DNA mismatch repair protein MutS [Enterococcus casseliflavus EC10]
Length = 787
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 192/674 (28%), Positives = 320/674 (47%), Gaps = 107/674 (15%)
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL +L + + + +DEDG + D ASPAL+ R ++ ER + + +D
Sbjct: 114 IEFSRLYHWEEQLVSLPTLNRRLKEAIDEDGRVTDDASPALRGIRQSIRRAERTIRETLD 173
Query: 231 MLIRNENNESLFLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R N + L + ++ R I + G ++ SSSG IEP V N
Sbjct: 174 GIVRGGNAKYLSDTIVTMRNERYVIPVKQEYRGVFGGVVHDQSSSGQTLFIEPKQVVEQN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + +L L+ ++ EI I +D +NA+A + P
Sbjct: 234 NRLRQHQIAERDEITRILAELSAELAPYQREILHNAYVIGIMDFMNAKARFGKEMKAIVP 293
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
I ++ ++ +A HPL+ Q+
Sbjct: 294 AI----------------------NQDNHVFFKQARHPLIDQE----------------- 314
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
+ P+++ + ++ + +VITGPNTGG
Sbjct: 315 --------------------KVVPNDITI---------------GKEYQAVVITGPNTGG 339
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KTI LKT+GL +M ++GL IL+ E +++ F+ +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 KTITLKTLGLLQIMGQAGLPILAEEESQMGVFNEIFADIGDEQSIEQSLSTFSSHMTTIV 399
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
++ + SLVL DE+GAGT+P EG AL +++L+ + S +ATTH+ ELK Y+
Sbjct: 400 EVLKKVDETSLVLFDELGAGTDPQEGAALAIAILDELG-AKSAYVMATTHYPELKVYGYN 458
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
NA MEFD L PTY++L GVPGRS+A I++RLGLP ++ A+++ S ++
Sbjct: 459 RSNTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISKRLGLPDTIIDQAKEIMDGESQDL 518
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
NE+I ++E + E RH + + LH+ LE S F + +K
Sbjct: 519 NEMIADLENRRKMTETEYLEVRHHVKEAARLHQE--------LEAAYSYFFEEREK---E 567
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
A AR + A Q+ A + + ++++ + Q TKV K ++ + + +
Sbjct: 568 LAKAR----QKANQIVEEAKEESEKIIADIRKMQLAGGQ----TKV-KEHELIDARTKLS 618
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
+ + EH + V++ K + +K GD V V+S+G++G ++K + K + V
Sbjct: 619 GLQQEEH--LQKNKVLQKAKAAKTLKE------GDEVLVTSYGQRGVLLK-KAGKNQWQV 669
Query: 828 QVGNMKWIMKFTDI 841
Q+G +K + TD+
Sbjct: 670 QIGILKMNLPETDL 683
>gi|15217840|ref|NP_176687.1| DNA mismatch repair protein MutS2 [Arabidopsis thaliana]
gi|332196204|gb|AEE34325.1| DNA mismatch repair protein MutS2 [Arabidopsis thaliana]
Length = 857
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 245/831 (29%), Positives = 401/831 (48%), Gaps = 133/831 (16%)
Query: 37 VAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL 96
+ + SDD +S V ++L VLEW LC+ +S FA T++G AT + + ++S L
Sbjct: 35 IRAASSDDSQS-VENQTLEVLEWRALCNQLSPFASTTMGLSATKNAEIPVGNSPEESRNL 93
Query: 97 LDETNAAI---EMQKHGSCSL----DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALL 149
L+ET+AA+ EM K L DL+ + V + VR +R L
Sbjct: 94 LNETSAALAAMEMMKSRGLGLSEIQDLSDIVERAVSGQLLTVRELCTVRS-------TLT 146
Query: 150 QFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGS-IKDSAS 208
+ T Q +AAI ++ R PL ++ +L + I +D + + I D AS
Sbjct: 147 AATSTFQKLRKAAISDN-----RVTPLVDILQGCDFKDTLQQKISFCIDCNMTMILDRAS 201
Query: 209 PALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE-------VSSIHGRLC--IRTGAD 259
L+ R + R+ + +D L++ + + +FL ++ R+C IR
Sbjct: 202 EDLEIIRSE----RRRNMENLDSLLKKISTK-IFLAGGINKPLITQRRSRMCVAIRATHK 256
Query: 260 QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLA-LTEKMQVDLD 317
L G++LS SSS IEP AV LN+ ++ A+ KAEE +L+ LT ++ +
Sbjct: 257 SLLPGGVVLSVSSSRATCFIEPKEAVELNN-MEVRHANSEKAEEMAILSILTSEVVMAQR 315
Query: 318 EIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTI 377
EI +L+ I++LD+ ARA+++ G PN VTS+ + + +
Sbjct: 316 EILHLLDRILELDIAFARASHANWINGVYPN---------------VTSEHTKTP-GLAV 359
Query: 378 YLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVS 437
+ A HPLLL L S N GG+
Sbjct: 360 DIDSAQHPLLLGSV----------LGSPN---------GGDI------------------ 382
Query: 438 ALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVP 497
PVP+DI + +V+VI+GPNTGGKT LKT+GL +M+KSG+++ + ++P
Sbjct: 383 -----FPVPVDIKVESSAKVVVISGPNTGGKTALLKTLGLLSLMSKSGMYLPAKNCPRLP 437
Query: 498 WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557
WFD + ADIGD QSL QSLSTFSGH+ +I I+ ++ SLVLLDEI +GT+P EG AL
Sbjct: 438 WFDLILADIGDPQSLEQSLSTFSGHISRIRQILDIASENSLVLLDEICSGTDPSEGVALA 497
Query: 558 MSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRS 617
S+L+ + ++ + + +TH+G+L LK + F+NA MEF L+PT+++LWG G S
Sbjct: 498 TSILQ-YIKNRVNVAVVSTHYGDLSRLKDNEPRFQNAAMEFSMETLQPTFRVLWGSTGLS 556
Query: 618 SAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLML--- 674
+A+ +A+ +G +++NA + + E ++ER K + + E R+ L L
Sbjct: 557 NALRVAKSIGFNKRILENAHKWTEKLNPE-----QDVER-KGSLFQSLMEERNKLKLQAT 610
Query: 675 -SRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLV 733
+ H++L+ + LEH + D R+L+ K Q++ + A+S
Sbjct: 611 KTAAFHRDLMNLYHE-LEH----------ESHDLDKRERALLKKETQKVQEDLNSAKS-- 657
Query: 734 HKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVK 793
+ ++L L T+ + ++ T + V A + D +
Sbjct: 658 --KMERLVAEFESQLEITQADQYNSLILK-----TEEAVAEIIEACCPMDPDSLEEEYSD 710
Query: 794 RTELPNVGDLVHVSSFGKK-GTVIKVEPSKEE--IVVQVGNMKWIMKFTDI 841
+ P G+ V V+ G K GTV++ EP ++ ++VQ G ++ +K DI
Sbjct: 711 YS--PQAGEKVLVTGLGDKLGTVVE-EPGDDDDTVLVQHGKIRVRIKKKDI 758
>gi|303275984|ref|XP_003057286.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461638|gb|EEH58931.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1075
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/268 (47%), Positives = 165/268 (61%), Gaps = 19/268 (7%)
Query: 414 LYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLK 473
L GG AR D N + +++ PVP+D+F+ R +VITGPNTGGKT +K
Sbjct: 490 LLGGRLARN---DPN------RPGVVKIKGPVPVDVFVPLNARCVVITGPNTGGKTAAMK 540
Query: 474 TVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQS 533
VGLA +MA++GL I +E AK+PWFDSV DIGD Q L SLSTFS L + I+S +
Sbjct: 541 AVGLAALMARAGLFI-PAETAKLPWFDSVLVDIGDSQDLMTSLSTFSARLAKQRAILSAA 599
Query: 534 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-------ESGSLLTIATTHHGELKTLKY 586
+ SLVL+DE+G GT+P EG+A+G +LLE A + + LT+ATTHHGELK LKY
Sbjct: 600 SPTSLVLMDEVGTGTSPAEGSAIGAALLERLAGVAGGNSANAAGLTLATTHHGELKALKY 659
Query: 587 --SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
FENA +EFDE L PTY++LWGVPGRS A+ IAER GL VV +AR + G
Sbjct: 660 EHPGGVFENAAVEFDEALLAPTYRLLWGVPGRSRALQIAERFGLEPDVVDDARSMLGEGR 719
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFL 672
+ I +E + E + AR L
Sbjct: 720 VTLESTISALEIARRGADEDIATARRLL 747
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 143/302 (47%), Gaps = 14/302 (4%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ESL W +LC ++ +A T+LG+EA T L ++ S LLDET+AA+ M+ H
Sbjct: 66 ESLVACGWHELCEHLAGYASTALGQEACRT-LPLPSEGPWASEALLDETSAAVAMESHHG 124
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
SLD G+ + V+ A+ + + + L +E A+++ + + L S+ +K +
Sbjct: 125 VSLDFGGILSAEVRRALYKSEKYASLGGDELAAMMSFIAAVKRLTKSVE-GVKVNGAPPP 183
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
PL + + + +I VD+ G KD ASP L+++R Q E KL + +
Sbjct: 184 ELEPLRLLTSTTIAHGEVADAIRACVDDQGGFKDGASPELRRARSQKSAAESKLRRAL-- 241
Query: 232 LIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV-IEPLSAVPLNDEL 290
+S S GR+ + D+ L++ ++G V +EP S V LN L
Sbjct: 242 -------QSFGGSTVSHQGRMVLAV--DKAPPGALVVGVAAGGALVLVEPPSVVLLNGTL 292
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIF 350
QA A+ A + V LT ++ ++ L+ + +LDVV A+A + + P
Sbjct: 293 AQANAAEETAIDAVRRRLTYEVAAVCVDLLAALDVVTRLDVVAAKARQAAALNAIRPTFV 352
Query: 351 LP 352
LP
Sbjct: 353 LP 354
>gi|116072695|ref|ZP_01469961.1| MutS 2 protein [Synechococcus sp. BL107]
gi|116064582|gb|EAU70342.1| MutS 2 protein [Synechococcus sp. BL107]
Length = 779
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 211/615 (34%), Positives = 308/615 (50%), Gaps = 114/615 (18%)
Query: 62 LCHSVSSFARTSLGREAT-LTQL-WSINQTYQDSLRLLDETNAAIEMQKHGSCSL----D 115
+C +++FA T +G EA TQL S+ +T Q ++ A ++ G S D
Sbjct: 1 MCEHLATFASTRMGLEAARATQLPHSLAETLQRQAETVE--MAVLDDLTEGGLSFRSVND 58
Query: 116 LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMP 175
L V L +K + AS E LAV L + L+ + +D +L P
Sbjct: 59 LRPVLLRCLKGGV-----ASG---EELLAVAGTLAAARKLRRQI-----DDPELR----P 101
Query: 176 LTQMIMQLFVNRSLIKSIMQV-VDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIR 234
+ +++ V ++ ++ ++E G + D ASP L R Q L ++ + L R
Sbjct: 102 VCTALIETMVTLPDLEQRLKFSLEEGGRVADRASPPLAGLRQQWHGLRQERRDKLQELTR 161
Query: 235 NENNESLFLEVSSI---HGR--LCIRTGA-DQLSFKGLLLSSSSGIGSVIEPLSAVPLND 288
+ FL+ S I HGR L ++ GA Q+S + + SS+SG IEP S + + +
Sbjct: 162 RYAS---FLQDSVIAQRHGRPVLAVKAGAVGQVSGQ-VHDSSASGNTVFIEPRSVLTMGN 217
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNA----RATYSLSFGG 344
+L A + K E+ VL L++ + D E +LN ++++ + R Y G
Sbjct: 218 KLVDIEARIRKEEQRVLAELSDLVAQD----EPVLNSLVEILLALDLALARGRYGRWLGA 273
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
PN+ S + E L HPLL+ QHK+ +
Sbjct: 274 VPPNL--------------------SEDPEAPFLLRDLRHPLLIWQHKRSSG-------- 305
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
SP VPI + ++ + RV+ ITGPN
Sbjct: 306 -------------------------SPV------------VPISVDVSAQLRVVAITGPN 328
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKT+ LK++GLA +MA++G+ + S +PW V ADIGDEQSL QSLSTFSGH+K
Sbjct: 329 TGGKTVSLKSLGLAALMARAGMLLPCSGQPSLPWCPQVLADIGDEQSLQQSLSTFSGHIK 388
Query: 525 QIGNI---ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
+IG I + + +LVLLDE+GAGT+P EGTAL +LL+A A+ + LTIATTH GEL
Sbjct: 389 RIGRILHALESGPAPALVLLDEVGAGTDPSEGTALATALLKALADR-ARLTIATTHFGEL 447
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL-PGIVVQNARQLY 640
K LKYS+D FENA + F+ L PTY++LWG+PGRS+A+ IA RLGL G++ Q L
Sbjct: 448 KALKYSDDRFENASVAFNAETLSPTYELLWGIPGRSNALAIATRLGLDAGVLDQAQALLA 507
Query: 641 GAASAEINEVIIEME 655
AA E+N VI +E
Sbjct: 508 PAAEGEVNTVIQGLE 522
>gi|308068160|ref|YP_003869765.1| MutS2 protein [Paenibacillus polymyxa E681]
gi|305857439|gb|ADM69227.1| MutS2 protein [Paenibacillus polymyxa E681]
Length = 789
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 164/411 (39%), Positives = 221/411 (53%), Gaps = 51/411 (12%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L VPID+ + +++TGPNTGGKT+ LKT+GL +MA SGL + + +++ FD
Sbjct: 313 LEQVVPIDVELGNSYTSIIVTGPNTGGKTVTLKTIGLLSLMAMSGLFVPVEDESQLCVFD 372
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+++ADIGDEQS+ Q+LSTFS H+ I +I+ T +SLVLLDE+GAGT+P EG+AL +S+
Sbjct: 373 AIYADIGDEQSIEQNLSTFSSHMTNIISILKNMTPKSLVLLDEVGAGTDPAEGSALAVSI 432
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE G + +ATTH+ ELK Y NA MEFD L PTY++L GVPGRS+A
Sbjct: 433 LEHIHAMGCRM-VATTHYSELKAYAYERKGIINASMEFDVATLSPTYRLLVGVPGRSNAF 491
Query: 621 NIAERLGLPGIVVQNARQ---------LYGAASAEINEVIIEMERFKTQFLEHVHEARHF 671
IAERLGLPG ++ AR + AS E N + E ER K + L EA
Sbjct: 492 AIAERLGLPGRILDYARGEVTEEDQRVEHMIASLEQNRLTAEQEREKAEQLRKEMEA--- 548
Query: 672 LMLSRNLHKNLLRTRRKI-LEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
LR+R + L+ SQR R ++K D AR LV K AR
Sbjct: 549 -----------LRSRHQTELDKLESQRDRMLEKAEDE---ARVLVDK-----------AR 583
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
S K LR A + K +H L + ++ +D+ E P S VK P
Sbjct: 584 SEAEKIITDLRKLAQEEGASVK----EHKLIAARKE--LDEAE-PKQRKKSTVK----RP 632
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
RT GD V V S KKG V+++ +K E VVQ+G MK + D+
Sbjct: 633 AATRTRSIMAGDEVSVHSLNKKGHVVELSGTK-EAVVQLGIMKMKVSLDDL 682
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 147/302 (48%), Gaps = 22/302 (7%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHGSC 112
+ LE+ K+ + +S +A+T+ G++ L S + + + L+ DE AA ++ G
Sbjct: 6 FKTLEYQKILNKLSHYAQTATGQQTALRLQPSDDLEHIKKMLKGTDEAYAADRLK--GVP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
S + VD++ A++ R L P E L + +Q + +Q+ + + +E+
Sbjct: 64 SFNGV-VDIT---PAVKRARIGGTLSPQELLGIRTTVQAARRIQVYVTSLHEEN------ 113
Query: 173 FMPLTQMIM---QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
P+ ++ QL R L SI +DE+ + DSAS L Q R +++ E ++ + +
Sbjct: 114 --PVETLLYWSEQLSEQRGLENSIKGCIDENAEVLDSASTELSQIRRELRSGEVRIREKL 171
Query: 230 DMLIRNEN-NESLFLEVSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVP 285
D +IR+ ++ L ++ +I G R I A+ S+ G ++ SG G+ IEP S V
Sbjct: 172 DSMIRSSTVSKMLQDQLITIRGDRFVIPVKAEYRSYFGGIVHDQSGSGATLFIEPESIVA 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
+N++L++ R + E +L LT + D + ++ + LD + A+A + T
Sbjct: 232 MNNKLRETRLREEREIEVILQKLTALVAEQADMLLYDVDILGNLDFIFAKARLAREMKAT 291
Query: 346 SP 347
P
Sbjct: 292 LP 293
>gi|253577240|ref|ZP_04854559.1| MutS2 family protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843354|gb|EES71383.1| MutS2 family protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 788
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 188/591 (31%), Positives = 301/591 (50%), Gaps = 95/591 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ +E+ K+ +SSF++T+LG+ T L + +D RLL T+ A ++ +
Sbjct: 6 LKTMEYQKIIDQLSSFSQTALGKR-TAEALRPVTD-LEDVKRLLQATDEAFKVDRLKGAP 63
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
VD++ A++ R L P+E L + L+ S ++ + A + E+ ++ +
Sbjct: 64 GFGGIVDIT---PAVKRARIGGTLNPHELLGIATTLEGSRRIKRYI-ATMHEEHEVPL-- 117
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
L + L + L +I + +DE + DSASP L R +++ E ++ + +D +I
Sbjct: 118 --LYHLSDTLSDQKPLEDAIKRCIDESAEVLDSASPELATIRRELRSGEVRIREKLDAMI 175
Query: 234 RNENNESLFLE-VSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLNDE 289
R+ + + + + +I G R I A+ + G ++ SG G+ IEP S V +N++
Sbjct: 176 RSASVSKMLQDQLITIRGDRFVIPVKAEYRAHFGGIVHDQSGSGATLFIEPESIVAMNNK 235
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKML-NGII--QLDVVNARATYSLSFGGTS 346
L++ R + E +L LT + ++ E +L +G + QLD + A+A + GT
Sbjct: 236 LRETRLREEREIEVILQKLTALVG---EQAELLLYDGDVLGQLDFIFAKARLARELKGT- 291
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
LP+ R I L K HPL+
Sbjct: 292 ----LPRMNDRGF-----------------IKLKKGRHPLI------------------- 311
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
P++ QV VPID+ + + +++TGPNTG
Sbjct: 312 ------------------------PAD-QV--------VPIDVELGNQYTTIIVTGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA SGL + + + +++ FD+++ADIGDEQS+ QSLSTFS H+ I
Sbjct: 339 GKTVTLKTIGLLSLMAMSGLFVPAEDGSQLCVFDAIYADIGDEQSIEQSLSTFSSHMTNI 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
+I+ Q T +SLVLLDE+GAGT+P EG+AL +++LE G + +ATTH ELK Y
Sbjct: 399 ISILRQMTPKSLVLLDELGAGTDPAEGSALAIAILEHIHSLGCRM-VATTHFSELKAYAY 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
NA MEFD L PTY++L G+PGRS+A IAERLGLP +++ AR
Sbjct: 458 ERKGVINASMEFDVATLSPTYRLLVGIPGRSNAFAIAERLGLPERILEYAR 508
>gi|414584744|tpg|DAA35315.1| TPA: hypothetical protein ZEAMMB73_219783 [Zea mays]
Length = 901
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 189/599 (31%), Positives = 294/599 (49%), Gaps = 77/599 (12%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+ LEW +C ++ F T+ GR A + ++ ++S RL+D+T AA+ +
Sbjct: 67 ETESALEWGGVCERLAHFTATAAGRAACEGGRVPVGRSREESERLIDQTAAAVLL----P 122
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
LD GV+ A RA +R E AV ++ + L+ E D
Sbjct: 123 TPLDFGGVEDVSALVAAAVAGRALAVR--ELCAVGRSIRAVRAVFHQLKRLADEMPD--G 178
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGS-IKDSASPALKQSRGQVQMLERKLYQLMD 230
R+ L ++ L++ I +D S + D AS L+ R + + L L+
Sbjct: 179 RYSSLVDILQGCDFLTELVQRIEFCLDSTLSLVLDRASKKLEIIRRERRRNIEMLESLL- 237
Query: 231 MLIRNENNESLFLE-------VSSIHGRLCIRTGADQ--LSFKGLLLSSS-SGIGSVIEP 280
+ +FL V+ R+C+ A L G++LSSS SG +EP
Sbjct: 238 ----KDTAAKIFLAGGIDNPLVTKRRSRMCVGVKASHKHLMPGGIVLSSSGSGATYFMEP 293
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLD-EIEKMLNGIIQLDVVNARATYS 339
AV LN+ + + +AEE V+L+L M D +I +++ +++LD+ AR +Y+
Sbjct: 294 QDAVELNNR-EVKLSGEERAEELVVLSLLTSMIADSQLKIRNLMDNVLELDLACARGSYA 352
Query: 340 LSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAW 399
L P + T S +++IY+ HPLLL+Q
Sbjct: 353 LWTNSVRPTF-----------TDSYTISQSDQCNDYSIYIEGIRHPLLLEQSLMA----- 396
Query: 400 KDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLV 459
E + TE SEM PVP+D+++ + R++V
Sbjct: 397 ---EESTTE----------------------ASEM---------PVPLDMWVKKNARIVV 422
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
I+GPNTGGKT +KT+GL+ +M+K+G+ + ++PWFD V ADIGD QSL SLSTF
Sbjct: 423 ISGPNTGGKTATMKTLGLSSLMSKAGIFFPAKGRPRIPWFDQVLADIGDHQSLEHSLSTF 482
Query: 520 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579
SGH+ ++ I+ + SLVL+DEIG+GT+P EG AL S+L+ A S L I TTH+
Sbjct: 483 SGHISRLRKIVEMVSKDSLVLIDEIGSGTDPAEGVALSTSILKYLA-SRVNLAIVTTHYA 541
Query: 580 ELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
+L L+ ++ FENA MEF L+PTY+ILWG G S+A++IA+ +G V+ A++
Sbjct: 542 DLSRLQSVDNRFENAAMEFCVETLQPTYRILWGSTGNSNALSIAKSIGFDQKVLDRAQE 600
>gi|242074804|ref|XP_002447338.1| hypothetical protein SORBIDRAFT_06g033170 [Sorghum bicolor]
gi|241938521|gb|EES11666.1| hypothetical protein SORBIDRAFT_06g033170 [Sorghum bicolor]
Length = 912
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 231/807 (28%), Positives = 366/807 (45%), Gaps = 108/807 (13%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+ LEW +C ++ FA T+ GR A + + ++ ++S R +D+T AA+ +
Sbjct: 69 ETESALEWGGVCERLAHFASTAAGRAACEGRRVPVGRSREESERFIDQTAAAVLL----P 124
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
LD GV+ A RA +R E AV ++ + L+ E D
Sbjct: 125 TPLDFGGVEDVSALVAAAASGRALAVR--ELCAVGRSIRAVRAVFDQLKRLADEMPDG-- 180
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGS-IKDSASPALKQSRGQVQ----MLERKLY 226
R+ L ++ L++ I +D S + D AS L+ R + + MLE L
Sbjct: 181 RYSSLVDILQGCDFLTELVQRIEFCLDSTLSLVLDRASKKLEIIRRERRRNIEMLESLLK 240
Query: 227 QLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQ--LSFKGLLLSSS-SGIGSVIEPLSA 283
+ + +S V+ R+C+ A L G++LSSS SG +EP A
Sbjct: 241 DTAAKIFQAGGIDSPL--VTKRRSRMCVGVKASHKHLVPGGIVLSSSGSGATYFVEPRDA 298
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLD-EIEKMLNGIIQLDVVNARATYSLSF 342
V LN+ + + +AEE +L+L M D +I +++ +++LD+ AR +Y+
Sbjct: 299 VELNNR-EVKLSGDERAEELAILSLLTSMIADSQLKIRNLMDKVLELDLACARGSYARWT 357
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
G P + T S ++++Y+ HPLLL+Q
Sbjct: 358 NGVKPTF-----------SDSYTISQSDQCTDYSVYIEGIRHPLLLEQ------------ 394
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
+L E A E+ PVP+D+++ + R++VI+G
Sbjct: 395 -------------------------SLMAEESTTRASEM--PVPLDMWVKKHARIVVISG 427
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKT +KT+GL+ +M+K+G+ + ++PWFD V ADIGD QSL SLSTFSGH
Sbjct: 428 PNTGGKTATMKTLGLSSLMSKAGMFFPAKGSPRIPWFDQVLADIGDHQSLEHSLSTFSGH 487
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
+ ++ I+ + SLVL+DEIG+GT+P EG AL S+L+ A S L I TTH+ +L
Sbjct: 488 ISRLRKIVEIVSKDSLVLIDEIGSGTDPSEGVALSTSILKYLA-SKVNLAIVTTHYADLS 546
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ---- 638
L+ ++ FENA MEF L+PTY+ILWG G S+A++IA+ +G V+ A++
Sbjct: 547 RLQSVDNRFENAAMEFCVETLQPTYRILWGSTGNSNALSIAKSIGFDQKVLDRAQEWVEK 606
Query: 639 LYGAASAEINEVIIEMERFKTQFLE-HVHEARHFLMLSRNLHKNLLRTRRKILE-HCASQ 696
L E ++ + + + LE +EA L L+ N +R LE A
Sbjct: 607 LLPDKQKERQGLLYDSLLDEKKLLESQANEAASVLSQVEGLY-NEIRLEADDLESRVAGL 665
Query: 697 RFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKN 756
R R+ QK+ Q+L SQ +++ QL+ S + +
Sbjct: 666 RARETQKVQ--------------QELKVVKSQMDTIIKNFEAQLKNSKLEQYNS------ 705
Query: 757 QHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKK--GT 814
L + T V + D QS V P +GD V++ G T
Sbjct: 706 ---LMRKAEAATASVVAAHQPNEITFDDDENQSSFV-----PQIGDKVYIQGLGGGTMAT 757
Query: 815 VIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V++ E +VQ G +K +K I
Sbjct: 758 VVETFGEDESCMVQYGKIKVRVKRNKI 784
>gi|384044690|ref|YP_005492707.1| MutS2 family protein [Bacillus megaterium WSH-002]
gi|345442381|gb|AEN87398.1| MutS2 family protein [Bacillus megaterium WSH-002]
Length = 660
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 204/657 (31%), Positives = 327/657 (49%), Gaps = 113/657 (17%)
Query: 191 KSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSI 248
++I +DE+G++ D AS L+ R +++ E ++ + ++ LIR+ + + + + V+
Sbjct: 8 QTIKMSIDENGTVLDGASDQLRGIRQKLRSTESRIREKLESLIRSSSAQKMLSDAIVTIR 67
Query: 249 HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLL 306
+ R I + S G ++ SSSG IEP + V LN+ELQ+A+ + E +L+
Sbjct: 68 NERFVIPVKQEYRSAYGGIVHDQSSSGATLFIEPQAIVTLNNELQEAKVKEKQEIERILI 127
Query: 307 ALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTS 366
ALT ++ +E+ + + + +LD + A+ YS HE S
Sbjct: 128 ALTVQVAEVANELRQNVYLLGELDFMFAKGRYS---------------------HELKAS 166
Query: 367 KVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKD 426
K ++R + I L KA HPL+ Q +D+ + + EL G++
Sbjct: 167 KPKMNDRGY-IKLVKAKHPLIAQ----------EDVVANDIEL-------------GDQY 202
Query: 427 TNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL 486
T++ VITGPNTGGKT+ LKT+GL +MA++GL
Sbjct: 203 TSI-----------------------------VITGPNTGGKTVTLKTLGLFTLMAQAGL 233
Query: 487 HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGA 546
I + + +++ F VFADIGDEQS+ QSLSTFS H+ I +I+ + +SLVL DE+GA
Sbjct: 234 QIPALDGSEMAVFKHVFADIGDEQSIEQSLSTFSSHMVNIVDILQKVDHESLVLFDELGA 293
Query: 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPT 606
GT+P EG AL +S+L+ E G+ + +ATTH+ ELK Y+ + NA +EFD L PT
Sbjct: 294 GTDPQEGAALAISILDQVYERGARV-VATTHYPELKAYGYNREGVVNASVEFDIETLSPT 352
Query: 607 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVH 666
YK+L GVPGRS+A I++RLGL V++ A+ G+ + ++ +I +E + Q +
Sbjct: 353 YKLLIGVPGRSNAFEISKRLGLSAEVIERAKGYIGSETNKVENMIASLEDSRRQSEHELE 412
Query: 667 EARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
EA ++ LHK L + +I+E K K+ + A + AQ +A
Sbjct: 413 EAEELRKEAQKLHKEL---QSQIIEFN-----EKRDKLYEKA-------EEKAQATVKAA 457
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
S+ K LR K+ + H L + K A + ++
Sbjct: 458 SEE---AEKIISDLR----------KMSQKNHALVKEHELIEARKRLEDAVPT---LEKS 501
Query: 787 KQSPRV--KRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K+ P V K+ GD V V S+G+KGT+++ S E VQ+G MK +K D+
Sbjct: 502 KKKPAVPKKQERTLQAGDEVKVLSWGQKGTLVE-RVSNNEWQVQMGIMKMKVKEKDL 557
>gi|449095303|ref|YP_007427794.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis XF-1]
gi|449029218|gb|AGE64457.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis XF-1]
Length = 785
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 232/795 (29%), Positives = 371/795 (46%), Gaps = 126/795 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA--TLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ V A +SLG+E L SI++ + L +DE + I ++
Sbjct: 6 LSALEFHKVKEQVIGHAASSLGKEMLLELKPSASIDEI-KKQLDEVDEASDIIRLRGQAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ A+R S L P+E + LL + ++ + ++ D+
Sbjct: 65 FG------GLVDIRGALRRAEIGSVLSPSEFTEISGLLYAVKQMKHFITQMAEDGVDI-- 116
Query: 172 RFMPLT-QMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
PL Q QL L + I +D+ G + D AS L+ R Q++ LE ++ ++
Sbjct: 117 ---PLIHQHAEQLITLSDLERDINSCIDDHGEVLDHASETLRGIRTQLRTLESRVRDRLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +
Sbjct: 174 SMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ LQQA+ + E +L LTEK +E+ L + LD + A+A Y+ + T
Sbjct: 234 NNSLQQAKVKEKQEIERILRVLTEKTAEHTEELFLDLQVLQTLDFIFAKARYAKAVKAT- 292
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
+P+ + I L KA HPLL
Sbjct: 293 ---------------KPIMNDTG------FIRLKKARHPLL------------------- 312
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
P ++ V DI + R +VITGPNTG
Sbjct: 313 -----------------------PPDQV----------VANDIELGRDFSTIVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA+SGLHI + E ++ F+ VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTVTLKTLGLLTLMAQSGLHIPADEGSEAAVFEHVFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ Q SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y
Sbjct: 400 VGILEQVNENSLVLFDELGAGTDPQEGAALAMSILDDVHRTNARV-LATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A I++RLGLP ++ A+ A E
Sbjct: 459 NREGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISKRLGLPDHIIGQAKSEMTAEHNE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++ +I +E+ K + E + E + LHK L +++I+E + +K + + +
Sbjct: 519 VDTMIASLEQSKKRAEEELSETESIRKEAEKLHKEL---QQQIIELNS----KKDKMLEE 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A ++A+++ + +A ++H +LR K +H + +
Sbjct: 572 AE-------QQAAEKVKAAIKEAEDIIH----ELRSI-----------KEEHKSFKDHEL 609
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
K A + K ++ KR P GD V V +FG+KGT+++ + E
Sbjct: 610 INAKKRLEGAMPAFEKSKKPEKPKAQKRDFKP--GDEVKVLTFGQKGTLLE-KTGGNEWN 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K +K D+
Sbjct: 667 VQIGILKMKVKEKDL 681
>gi|392960889|ref|ZP_10326353.1| MutS2 protein [Pelosinus fermentans DSM 17108]
gi|421054879|ref|ZP_15517843.1| MutS2 family protein [Pelosinus fermentans B4]
gi|421058104|ref|ZP_15520836.1| MutS2 protein [Pelosinus fermentans B3]
gi|421063592|ref|ZP_15525555.1| MutS2 protein [Pelosinus fermentans A12]
gi|421071758|ref|ZP_15532871.1| MutS2 protein [Pelosinus fermentans A11]
gi|392439982|gb|EIW17670.1| MutS2 family protein [Pelosinus fermentans B4]
gi|392446346|gb|EIW23631.1| MutS2 protein [Pelosinus fermentans A11]
gi|392454456|gb|EIW31288.1| MutS2 protein [Pelosinus fermentans DSM 17108]
gi|392461473|gb|EIW37661.1| MutS2 protein [Pelosinus fermentans B3]
gi|392462624|gb|EIW38682.1| MutS2 protein [Pelosinus fermentans A12]
Length = 787
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 204/721 (28%), Positives = 345/721 (47%), Gaps = 115/721 (15%)
Query: 124 VKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQL 183
+++ ++ S L P+E +AV + L S ++ D+ + L ++
Sbjct: 71 IRTLLKRAEIGSVLAPDELVAVASTLYASRRMKNFF-------MDMPVALTILLGYAEKI 123
Query: 184 FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFL 243
V R++ I +V+E G I+D AS L R ++++ + ++ +D ++R+ + F
Sbjct: 124 NVLRNIENFIENIVNEQGQIRDDASVELLHVRREIRLSQSRIKDKLDGILRSSEYQKYFQ 183
Query: 244 E--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTK 299
+ V+ + R I + + F G++ S+SG +EP++ V LN+E++Q +T
Sbjct: 184 DALVTVRNERYVIPIKQEYRNHFPGIIHDQSASGATVFVEPMAVVILNNEIKQ----LTS 239
Query: 300 AEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSL 359
AE+ +EIE++L + S I++ DM ++
Sbjct: 240 AEK--------------NEIERILRSATE------------QIANVSETIYMNCDMLANI 273
Query: 360 THEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNA 419
+K+S + +A P++ + +QA L A+
Sbjct: 274 DFAFAKAKLSLT--------MQATMPIINNKGYVNLRQARHPLIEADV------------ 313
Query: 420 ARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAV 479
VPIDIFI + L+ITGPNTGGKT+ LKT+GL
Sbjct: 314 ------------------------VVPIDIFIGKDFNTLLITGPNTGGKTVTLKTLGLFA 349
Query: 480 MMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLV 539
+M ++GL+I +++ F+++FADIGDEQS+ QSLSTFS H+ + I++Q TS+ LV
Sbjct: 350 LMTQAGLYIPVQNGSEIAVFNNIFADIGDEQSIEQSLSTFSAHMTNLVRILNQITSEDLV 409
Query: 540 LLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599
L+DEIGAGT+P EG AL MS+LE G+ TIATTH+ ELKT YS ENA +EFD
Sbjct: 410 LIDEIGAGTDPDEGAALAMSILEHLLNIGA-KTIATTHYSELKTFAYSRQGIENASVEFD 468
Query: 600 EVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKT 659
L+PTY++L GVPG S+A I++RLGL ++ A Q AE V+ +E K
Sbjct: 469 IQTLRPTYRLLIGVPGSSNAFAISKRLGLSDRIIDQASQFIDKDHAEFETVLNALEEQKI 528
Query: 660 QFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSA 719
+ + +HE + + LH +LR + E+ + + K+ ++ A A SL+ K+
Sbjct: 529 AY-DKLHE--EVIQQEQTLH--ILREKLATEENVLAAKKHKI--LAKAQEEAESLLRKTR 581
Query: 720 QQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATAS 779
++ ++ ++ ++ S+++ K K N + D P +
Sbjct: 582 RETEEIITELKAQFTAKSN----SSTRQGIFDKSRKRLRDNLENLNENEEDDNSLPIVTA 637
Query: 780 SSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFT 839
S + +P G V++++ +KGTV+ + E++VQ+G MK + T
Sbjct: 638 SVL------TP----------GMQVYITTLKQKGTVVSI--GINEVIVQLGIMKMNVAIT 679
Query: 840 D 840
D
Sbjct: 680 D 680
>gi|433449627|ref|ZP_20412491.1| MutS2 family protein [Weissella ceti NC36]
gi|429539141|gb|ELA07179.1| MutS2 family protein [Weissella ceti NC36]
Length = 794
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 206/675 (30%), Positives = 316/675 (46%), Gaps = 117/675 (17%)
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
Y R + + ++ QL V +D DG + D AS L + R + E + Q M
Sbjct: 124 YTRLVTMPELTKQLNV----------AIDADGRVTDEASVELHRIRQAITGTENGIRQRM 173
Query: 230 DMLIRNENNESLFLE-VSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPL 286
R + + L V+ + R + A+ S G ++ S G +EP V +
Sbjct: 174 QDYTRGKMAQYLSDPIVTQRNDRYVVPVKAEYRSKFGGVVHDQSQTGQTLYVEPADVVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L++ E +L L+E + ++ + + QLD VNA+A Y++
Sbjct: 234 NNRLRENIVKERHEEARILAELSELLLPVAQDVTANADILGQLDFVNAKARYAM------ 287
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
M +SL EP S E I L +A HPLL DL A
Sbjct: 288 --------MSKSL--EPEVSD------ENHIRLLEARHPLL-------------DLNKA- 317
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
V DI + ++ITGPNTG
Sbjct: 318 --------------------------------------VANDIVLGEDYTAIIITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+GL +MA+SGL I ++E+A V FD +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTITLKTLGLLQLMAQSGLFIPTAEHATVGMFDQIFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
+I+ T SLVL DE+GAGT+P EG AL MS+L+A ++G+ T+ATTH+ ELK +
Sbjct: 400 VSILDNLTPNSLVLFDELGAGTDPQEGAALAMSILDAVGQTGA-YTVATTHYPELKVYGF 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ NA MEFD LKPTYK L G+PGRS+A+ I+ RLGL ++ A L S E
Sbjct: 459 NRADTINASMEFDVETLKPTYKFLLGIPGRSNALEISRRLGLDNTIIDGAASLADDESQE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+N++I ++ + L E LS + +N R + + + + Q I
Sbjct: 519 LNDMIADLVARRNAVLTQQIE------LSDQIAEN-RRMKNEYTDKLEKVDTVRAQTIEK 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A A +V +S ++ A + S +HK ++ +Q + K+ + L + Q+
Sbjct: 572 AKQEANHIVAESKKK----ADRIISDLHK----MQRDGAQ-IKENKLIDAKGALNALEQK 622
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
P+ ++ V+K KQ+ T+ GD V V +G++GTV++V ++
Sbjct: 623 --------PSAENNRVLKRAKQAKDQGITK----GDTVLVMEYGQQGTVLRV-LKNDQFE 669
Query: 827 VQVGNMKWIMKFTDI 841
+Q+G +K ++ +I
Sbjct: 670 IQMGILKMVLSGDEI 684
>gi|218195837|gb|EEC78264.1| hypothetical protein OsI_17950 [Oryza sativa Indica Group]
Length = 916
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 195/613 (31%), Positives = 304/613 (49%), Gaps = 61/613 (9%)
Query: 35 STVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSL 94
S VA + K+ RV E+ LEW +C ++ FA T+ GR A + ++ ++S
Sbjct: 54 SPVAAETPEAKQMRVETEA--ALEWGGVCARLAGFASTAAGRAACGEGRVPVGRSREESE 111
Query: 95 RLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSET 154
RLL++T AA + LD GV+ V SAI A L E V ++ +
Sbjct: 112 RLLEQTAAAALLPA----PLDFGGVED--VSSAIAAAAGARLLAVREICGVGRSIRAARR 165
Query: 155 LQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIK-DSASPAL-- 211
+ L+ +E D + PL ++ L++ I +D S+ D AS L
Sbjct: 166 VFDQLKTLSEETPDGR-SYTPLLDIMQDCDFLTELVQRIEFCLDYTLSVVLDRASDKLAT 224
Query: 212 --KQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQ--LSFKGLL 267
K+ R + MLE L + + +S V+ R+C+ A L G++
Sbjct: 225 IRKERRKNIDMLESLLRDTSTKIFQGGGIDSPV--VTKRRSRMCVGVKASHKHLVPGGIV 282
Query: 268 LSSS-SGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLD-EIEKMLNG 325
LSSS SG +EP A+ LN+ ++ + +AEE +L L D + +I ++
Sbjct: 283 LSSSGSGATYFMEPRDAIRLNN-MEVKLSGDERAEELAILGLLTSSIADSEMKIRHLMGK 341
Query: 326 IIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHP 385
I++LD+ AR +Y+L P F +D L + E ++++ HP
Sbjct: 342 ILELDLACARGSYALWINAVRP-AFTDRDSDTQL----------NPNSECSVFIEGIQHP 390
Query: 386 LLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV 445
LLL+Q +++ T + ++ L P+
Sbjct: 391 LLLEQSLSMVKES----------------------------TGVGKGQLSDEHLVSPMPI 422
Query: 446 PIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFAD 505
P+D+ + TR++VI+GPNTGGKT +KT+GLA +M+K+G+ + ++PWFD V AD
Sbjct: 423 PLDMQVRNDTRIIVISGPNTGGKTATMKTLGLASLMSKAGMFFPAKGTPRLPWFDQVLAD 482
Query: 506 IGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565
IGD QSL SLSTFSGH+ ++ I+ + SLVL+DEIG+GT+P +G AL S+L+ A
Sbjct: 483 IGDHQSLEHSLSTFSGHISRLRKIVQVVSKDSLVLIDEIGSGTDPSDGVALSTSILKYLA 542
Query: 566 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAER 625
S L I TTH+ +L LK +D FENA MEF L+PTY+ILWG G S+A++IA+
Sbjct: 543 -SRLNLAIVTTHYADLSRLKAVDDRFENAAMEFCLETLQPTYQILWGSTGNSNALSIAKS 601
Query: 626 LGLPGIVVQNARQ 638
+G V+ A++
Sbjct: 602 IGFDQKVLARAQE 614
>gi|395240988|ref|ZP_10418010.1| MutS2 protein [Lactobacillus gigeriorum CRBIP 24.85]
gi|394475496|emb|CCI87987.1| MutS2 protein [Lactobacillus gigeriorum CRBIP 24.85]
Length = 787
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 218/793 (27%), Positives = 366/793 (46%), Gaps = 126/793 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L++LE++++ +++ T+ +E S N YQ+ + L +T A ++ + G
Sbjct: 6 LKILEFERITARLANLTITNPAKEMANNLRPSDN--YQEIAKNLRQTLALADILRIKGQL 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
L D + V ++++ ++ + L E ++ +L ++ + A E D I+
Sbjct: 64 PL----TDFNSVATSMKRLKVKANLNAQELGNILLVLTLAKEIN-----AFVEGLDEKIK 114
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
+ +++ +L V + + +D DG+I DSAS L + R ++ E ++ MD
Sbjct: 115 LDAILELLDELDVPEEFYRVLKNALDIDGTILDSASSELARLRHDLRSNETEIKTRMDGY 174
Query: 233 IRNENNESLFLEVSSIH-GRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
++ +N+ L + +I GR I + + F G++ S+SG IEP + LN
Sbjct: 175 VKGRSNKYLSEAIVTIRDGRYVIPVKQEYRAKFGGIVHDQSASGQTLFIEPEGVLNLNSR 234
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
Q A + + +L L+ + ++ I + + +LD + A+A + T P
Sbjct: 235 QQNLLAQERQEIQRILRELSNLAREEIPTISTISEVLAELDFIQAKAKLATELKATEPK- 293
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
L QD ++ L KA HPL+
Sbjct: 294 -LTQD--------------------QSLKLLKARHPLI---------------------- 310
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKT 469
+L VP DI++ + ++ITGPNTGGKT
Sbjct: 311 ------------------------------DLTRVVPNDIYLGAEFDTMLITGPNTGGKT 340
Query: 470 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 529
I LKT GL +MA+SGL I + E ++V F +FADIGDEQS+ QSLSTFS H+ I +I
Sbjct: 341 ITLKTAGLLQLMAQSGLFIPAEEGSQVGVFKEIFADIGDEQSIEQSLSTFSSHINDIVDI 400
Query: 530 ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589
+ S +LVL+DEIGAGT+P EG +L +S+L+ + + + + TTH+ ELK Y+ +
Sbjct: 401 MKNSHQDTLVLIDEIGAGTDPEEGASLAISILDFLRQRKAKIMV-TTHYPELKLYGYNRE 459
Query: 590 FFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINE 649
NA MEFD L PTY++ G+PG S+A IA RLG+ VV+NA L ++IN+
Sbjct: 460 RTTNASMEFDIKTLSPTYRLQIGIPGHSNAFAIARRLGMREDVVKNAEGLMKDVDSDINQ 519
Query: 650 VIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAA 709
+I + + E + + L SRNL K K+ DA
Sbjct: 520 MIATLNDQTKKATEARIQLQTSLARSRNLEK----------------------KLQDALD 557
Query: 710 IARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTV 769
I V K + A++ + K+A+++ + + K ++ + +
Sbjct: 558 IYNQRVQKQLEFAQERANEVVAKKRKKAEEIIKELEEQRKNGALIKQNKLIDAKGE---F 614
Query: 770 DKVEHPAT--ASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
+K+E AT A++ V++ R KR NVGD V V S+G+ G + K + + + V
Sbjct: 615 NKLEQQATNLANNRVLQ------REKRRHHVNVGDQVKVLSYGQTGVITK-KLTDHDYEV 667
Query: 828 QVGNMKWIMKFTD 840
Q+G +K +K TD
Sbjct: 668 QIGIIK--VKVTD 678
>gi|220931412|ref|YP_002508320.1| MutS2 family protein [Halothermothrix orenii H 168]
gi|254766598|sp|B8D298.1|MUTS2_HALOH RecName: Full=MutS2 protein
gi|219992722|gb|ACL69325.1| MutS2 family protein [Halothermothrix orenii H 168]
Length = 791
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 140/395 (35%), Positives = 225/395 (56%), Gaps = 42/395 (10%)
Query: 444 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 503
PVPIDI + + + LVITGPNTGGKT+ LKTVGL V+M ++GLHI + E + F+ V+
Sbjct: 321 PVPIDITVGNEFKTLVITGPNTGGKTVALKTVGLFVLMVQAGLHIPAEEETVISIFNGVY 380
Query: 504 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 563
ADIGDEQS+ Q+LSTFS H+ +I + ++ ++SLVLLDEIG GT+P EG ALG+++LE
Sbjct: 381 ADIGDEQSIEQNLSTFSSHINRIKRFLGKADARSLVLLDEIGVGTDPREGAALGVAILEH 440
Query: 564 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIA 623
E G + TIATTH+ E+K+ YS D ENA +EFD L+PTY++L G+PG S+A IA
Sbjct: 441 LRERG-VTTIATTHYSEIKSYAYSQDGVENASVEFDMETLQPTYRLLMGIPGGSNAFEIA 499
Query: 624 ERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLL 683
+LGLP ++++ ++L ++ +I ++ E + + L + + L
Sbjct: 500 LKLGLPHDIIKDGKELMSGDDIKVENIISDLN----------EERKKYEQLKIEIEERLE 549
Query: 684 RTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPS 743
++K Q++ + ++D + L+ ++ ++ Q ++ +
Sbjct: 550 AVKKK------EQKYDSL--LTDLEKRKKKLITEAREEAL--------------QIIKKT 587
Query: 744 ASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATAS-SSVVKDI--KQSPRVKRTELPNV 800
+S + KN+ + ++ +D+VE+ + K+I K+ + RT + +
Sbjct: 588 RKESKEILRRLKNKEFAS----RSDIDRVENEINLNLKETEKEISEKRQNKDGRTRVKEI 643
Query: 801 --GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
GD V + G+KG VI V+ K E V+Q G MK
Sbjct: 644 SCGDQVRLKKTGQKGEVISVDREKGEAVIQAGIMK 678
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 147/303 (48%), Gaps = 12/303 (3%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
SL +LE+DK+ V FA T +G+E +++L ++ +L + ++A ++++G
Sbjct: 5 SLEILEFDKIIDRVQEFAATIIGKE-IISRLQPVDNLNYVKNKLREVSSAREILEEYGRP 63
Query: 113 SLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQ-FSETLQLSLRAAIKEDADLY 170
G+ DL + I + + L E + V + L+ E + S D +L
Sbjct: 64 PF--GGIRDL---REIIEKADKGIVLSVKEVMDVRSTLEGVRELKKYSREIGTGIDDELQ 118
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+ +T+ +L + L I + +DE G IKDSAS L+ R ++ +E K+ ++
Sbjct: 119 DIYSIITEKFDRLTPLKQLENEINRCIDEHGEIKDSASRKLRSIRREMDRIEGKINDKLN 178
Query: 231 MLIRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+I N + + + + +I G R + + + +F G++ S+SG+ +EP++ V L
Sbjct: 179 SIINNTRYQEMLQDKLVTIRGNRYVVPVKSSYKNTFSGIVHDQSTSGLTYFMEPMAIVKL 238
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L + + + + +L L+E ++ ++ L + LDV ARA +S+ G
Sbjct: 239 NNRLGELKRAEEQEIYRILKKLSENIKEHTRDLSDNLEMVSLLDVDFARARFSIEIEGIE 298
Query: 347 PNI 349
P I
Sbjct: 299 PGI 301
>gi|321312391|ref|YP_004204678.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis BSn5]
gi|320018665|gb|ADV93651.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis BSn5]
Length = 785
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 232/795 (29%), Positives = 371/795 (46%), Gaps = 126/795 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA--TLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ V A +SLG+E L SI++ + L +DE + I ++
Sbjct: 6 LSALEFHKVKEQVIGHAASSLGKEMLLELKPSASIDEI-KKQLDEVDEASDIIRLRGQAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ A+R S L P+E + LL + ++ + ++ D+
Sbjct: 65 FG------GLVDIRGALRRAEIGSVLSPSEFTEISGLLYAVKQMKHFITQMAEDGVDI-- 116
Query: 172 RFMPLT-QMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
PL Q QL L + I +D+ G + D AS L+ R Q++ LE ++ ++
Sbjct: 117 ---PLIHQHAEQLITLSDLERDINSCIDDHGEVLDHASETLRGIRTQLRTLESRVRDRLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +
Sbjct: 174 SMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ LQQA+ + E +L LTEK +E+ L + LD + A+A Y+ + T
Sbjct: 234 NNSLQQAKVKEKQEIERILRVLTEKTAEYTEELFLDLQVLQTLDFIFAKARYAKAVKAT- 292
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
+P+ + I L KA HPLL
Sbjct: 293 ---------------KPIMNDTG------FIRLKKARHPLL------------------- 312
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
P ++ V DI + R +VITGPNTG
Sbjct: 313 -----------------------PPDQV----------VANDIELGRDFSTIVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA+SGLHI + E ++ F+ VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTVTLKTLGLLTLMAQSGLHIPADEGSEAAVFEHVFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ Q SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y
Sbjct: 400 VGILEQVNENSLVLFDELGAGTDPQEGAALAMSILDDVHRTNARV-LATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A I++RLGLP ++ A+ A E
Sbjct: 459 NREGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISKRLGLPDHIIGQAKSEMTAEHNE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++ +I +E+ K + E + E + LHK L +++I+E + +K + + +
Sbjct: 519 VDTMIASLEQSKKRAEEELSETESIRKEAEKLHKEL---QQQIIELNS----KKDKMLEE 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A ++A+++ + +A ++H +LR K +H + +
Sbjct: 572 AE-------QQAAEKVKAAMKEAEDIIH----ELRSI-----------KEEHKSFKDHEL 609
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
K A + K ++ KR P GD V V +FG+KGT+++ + E
Sbjct: 610 INAKKRLEGAMPAFEKSKKPEKPKTQKRDFKP--GDEVKVLTFGQKGTLLE-KTGGNEWN 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K +K D+
Sbjct: 667 VQIGILKMKVKEKDL 681
>gi|302389949|ref|YP_003825770.1| MutS2 family protein [Thermosediminibacter oceani DSM 16646]
gi|302200577|gb|ADL08147.1| MutS2 family protein [Thermosediminibacter oceani DSM 16646]
Length = 790
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 209/800 (26%), Positives = 379/800 (47%), Gaps = 134/800 (16%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSL 114
++LE+DK+ +S +A + + + L + ++ S++ ET+ + + + G +
Sbjct: 7 KILEFDKVKRILSRYAVSDVAKGRLLELKPAADEQLIKSMQ--RETSEGVTILRSG---I 61
Query: 115 DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFM 174
++ +L ++++++ + L E L++ ++++ S ++ + + K A+ I
Sbjct: 62 NIPLNELPDIRTSLKRATMGAVLTTGELLSIASVMKTSRLVKNTW--SEKGIAECRI--- 116
Query: 175 PLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIR 234
+ +I ++ + SL I + + + I D ASP L R + ++L ++ + +++ I
Sbjct: 117 -IGSIIEEIHIFSSLEDKIHKAIISENEIADGASPRLSAIRKEKRILFQRAKEKLELYIS 175
Query: 235 NENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDEL 290
+ + E ++ + R I + + S G++ S+SG +EP+ + +N+EL
Sbjct: 176 SPQYQKFLQEPIITIRNSRYVIPVKQEFRSSIPGVIHDQSASGATLYLEPMPVLQINNEL 235
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIF 350
++ K E +L +EK + R ++F G F
Sbjct: 236 RRLEIEEQKEMEQILREFSEK-------------------IAENREYLEVTFEGLVRLDF 276
Query: 351 LPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELR 410
+ K S+ + V ++S I + K HPLL
Sbjct: 277 ILAKAKYSMDIKGVEPGLNSR---GYINIRKGRHPLL----------------------- 310
Query: 411 RRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTI 470
+GE VPIDI++ + VLVITGPNTGGKT+
Sbjct: 311 -----------RGE-------------------VVPIDIYLGDEFTVLVITGPNTGGKTV 340
Query: 471 CLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 530
LKTVGL +MA++GLH+ + E ++ F+ VFADIGDEQS+ QSLSTFS H+K I +I+
Sbjct: 341 SLKTVGLFALMAQAGLHLPAEEGTELSVFNEVFADIGDEQSIEQSLSTFSSHMKNIKDIV 400
Query: 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590
++ S+SLVLLDE+GAGT+P EG AL M++L+ F E G+ + +ATTH+ ELK YS +
Sbjct: 401 DKADSRSLVLLDELGAGTDPTEGAALAMAILDYFCEKGTRV-VATTHYSELKAFAYSMER 459
Query: 591 FENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEV 650
ENA +EFD L PTY++ G+PG+S+A IA+RLGL +++ AR + ++ ++
Sbjct: 460 MENASVEFDVETLSPTYRLTIGIPGKSNAFEIAKRLGLKREIIELARSFLNRENIQLEDL 519
Query: 651 I--IEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
+ +E ER + + R + +I E Q +++++ D
Sbjct: 520 LKGLEQERERAK-----------------------REKEEIQE-LKKQYMMRLKELEDE- 554
Query: 709 AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTT 768
L ++ + L + +ARS++ K + A + L K + Q T +
Sbjct: 555 --KEKLRNREEKILAKAREKARSIIEK----VNKEAEKILERLKEVEAQD--TRQVRDRI 606
Query: 769 VDKVEHPATASSSVVKDIKQSPRVKRTELP------NVGDLVHVSSFGKKGTVIKVEPSK 822
+++V +S + P +K+ N GD V V S ++G ++ V+ +
Sbjct: 607 IEEVRRRLKKASDDYS--PKEPLIKKAGAKVVAGPINPGDKVRVESLNQEGYIVSVDERE 664
Query: 823 EEIVVQVGNMKWIMKFTDIV 842
+ VQ+G MK + + +V
Sbjct: 665 KTAQVQIGIMKVNLPLSSLV 684
>gi|430758681|ref|YP_007208637.1| DNA mismatch repair protein MutSB [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|430023201|gb|AGA23807.1| DNA mismatch repair protein MutSB [Bacillus subtilis subsp.
subtilis str. BSP1]
Length = 785
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 232/795 (29%), Positives = 371/795 (46%), Gaps = 126/795 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA--TLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ V A +SLG+E L SI++ + L +DE + I ++
Sbjct: 6 LSALEFHKVKEQVIGHAASSLGKEMLLELKPSASIDEI-KKQLDEVDEASDIIRLRGQAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ A+R S L P+E + LL + ++ + ++ D+
Sbjct: 65 FG------GLVDIRGALRRAEIGSVLSPSEFTEISGLLYAVKQMKHFITQMAEDGVDI-- 116
Query: 172 RFMPLT-QMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
PL Q QL L + I +D+ G + D AS L+ R Q++ LE ++ ++
Sbjct: 117 ---PLIHQHAEQLITLSDLERDINSCIDDHGEVLDHASETLRGIRTQLRTLESRVRDRLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +
Sbjct: 174 SMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ LQQA+ + E +L LTEK +E+ L + LD + A+A Y+ + T
Sbjct: 234 NNSLQQAKVKEKQEIERILRVLTEKTAEYTEELFLDLQVLQTLDFIFAKARYAKAVKAT- 292
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
+P+ + I L KA HPL
Sbjct: 293 ---------------KPIMNDTG------FIRLKKARHPL-------------------- 311
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
L P ++ V DI + R +VITGPNTG
Sbjct: 312 ----------------------LPPDQV----------VANDIELGRDFSTIVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA+SGLHI + E ++ F+ VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTVTLKTLGLLTLMAQSGLHIPADEGSEAAVFEHVFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ Q SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y
Sbjct: 400 VGILEQVNENSLVLFDELGAGTDPQEGAALAMSILDDVHRTNARV-LATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A I++RLGLP ++ A+ A E
Sbjct: 459 NREGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISKRLGLPDHIIGQAKSEMTAEHNE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++ +I +E+ K + E + E + LHK L +++I+E + +K + + +
Sbjct: 519 VDTMIASLEQSKKRAEEELSETESIRKEAEKLHKEL---QQQIIELNS----KKDKMLEE 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A ++A+++ + +A ++H +LR K +H + +
Sbjct: 572 AE-------QQAAEKVKAAMKEAEDIIH----ELRSI-----------KEEHKSFKDHEL 609
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
K A + K ++ KR P GD V V +FG+KGT+++ + E
Sbjct: 610 INAKKRLEGAMPAFEKSKKPEKPKTQKRDFKP--GDEVKVLTFGQKGTLLE-KTGGNEWN 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K +K D+
Sbjct: 667 VQIGILKMKVKEKDL 681
>gi|16079910|ref|NP_390736.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. subtilis str. 168]
gi|221310799|ref|ZP_03592646.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. subtilis str. 168]
gi|221315124|ref|ZP_03596929.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. subtilis str. NCIB 3610]
gi|221320042|ref|ZP_03601336.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. subtilis str. JH642]
gi|221324324|ref|ZP_03605618.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. subtilis str. SMY]
gi|402777014|ref|YP_006630958.1| DNA mismatch repair enzyme [Bacillus subtilis QB928]
gi|418031956|ref|ZP_12670439.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. subtilis str. SC-8]
gi|452915656|ref|ZP_21964282.1| mutS2 family protein [Bacillus subtilis MB73/2]
gi|3914084|sp|P94545.2|MUTS2_BACSU RecName: Full=MutS2 protein
gi|1770036|emb|CAA99569.1| hypothetical protein [Bacillus subtilis]
gi|2635323|emb|CAB14818.1| putative DNA mismatch repair enzyme [Bacillus subtilis subsp.
subtilis str. 168]
gi|351470819|gb|EHA30940.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. subtilis str. SC-8]
gi|402482194|gb|AFQ58703.1| Putative DNA mismatch repair enzyme [Bacillus subtilis QB928]
gi|407960866|dbj|BAM54106.1| recombination and DNA strand exchange inhibitorprotein [Bacillus
subtilis BEST7613]
gi|407965696|dbj|BAM58935.1| recombination and DNA strand exchangeinhibitorprotein [Bacillus
subtilis BEST7003]
gi|452116004|gb|EME06400.1| mutS2 family protein [Bacillus subtilis MB73/2]
Length = 785
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 232/795 (29%), Positives = 371/795 (46%), Gaps = 126/795 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA--TLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ V A +SLG+E L SI++ + L +DE + I ++
Sbjct: 6 LSALEFHKVKEQVIGHAASSLGKEMLLELKPSASIDEI-KKQLDEVDEASDIIRLRGQAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ A+R S L P+E + LL + ++ + ++ D+
Sbjct: 65 FG------GLVDIRGALRRAEIGSVLSPSEFTEISGLLYAVKQMKHFITQMAEDGVDI-- 116
Query: 172 RFMPLT-QMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
PL Q QL L + I +D+ G + D AS L+ R Q++ LE ++ ++
Sbjct: 117 ---PLIHQHAEQLITLSDLERDINSCIDDHGEVLDHASETLRGIRTQLRTLESRVRDRLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +
Sbjct: 174 SMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ LQQA+ + E +L LTEK +E+ L + LD + A+A Y+ + T
Sbjct: 234 NNSLQQAKVKEKQEIERILRVLTEKTAEYTEELFLDLQVLQTLDFIFAKARYAKAVKAT- 292
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
+P+ + I L KA HPLL
Sbjct: 293 ---------------KPIMNDTG------FIRLKKARHPLL------------------- 312
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
P ++ V DI + R +VITGPNTG
Sbjct: 313 -----------------------PPDQV----------VANDIELGRDFSTIVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA+SGLHI + E ++ F+ VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTVTLKTLGLLTLMAQSGLHIPADEGSEAAVFEHVFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ Q SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y
Sbjct: 400 VGILEQVNENSLVLFDELGAGTDPQEGAALAMSILDDVHRTNARV-LATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A I++RLGLP ++ A+ A E
Sbjct: 459 NREGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISKRLGLPDHIIGQAKSEMTAEHNE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++ +I +E+ K + E + E + LHK L +++I+E + +K + + +
Sbjct: 519 VDTMIASLEQSKKRAEEELSETESIRKEAEKLHKEL---QQQIIELNS----KKDKMLEE 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A ++A+++ + +A ++H +LR K +H + +
Sbjct: 572 AE-------QQAAEKVKAAMKEAEDIIH----ELRTI-----------KEEHKSFKDHEL 609
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
K A + K ++ KR P GD V V +FG+KGT+++ + E
Sbjct: 610 INAKKRLEGAMPAFEKSKKPEKPKTQKRDFKP--GDEVKVLTFGQKGTLLE-KTGGNEWN 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K +K D+
Sbjct: 667 VQIGILKMKVKEKDL 681
>gi|428280333|ref|YP_005562068.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. natto BEST195]
gi|291485290|dbj|BAI86365.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. natto BEST195]
Length = 785
Score = 236 bits (602), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 232/795 (29%), Positives = 371/795 (46%), Gaps = 126/795 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA--TLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ V A +SLG+E L SI++ + L +DE + I ++
Sbjct: 6 LSALEFHKVKEQVIGHAASSLGKEMLLELKPSASIDEI-KKQLDEVDEASDIIRLRGQAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ A+R S L P+E + LL + ++ + ++ D+
Sbjct: 65 FG------GLVDIRGALRRAEIGSVLSPSEFTEISGLLYAVKQMKHFITQMAEDGVDI-- 116
Query: 172 RFMPLT-QMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
PL Q QL L + I +D+ G + D AS L+ R Q++ LE ++ ++
Sbjct: 117 ---PLIHQHAEQLITLSDLERDINSCIDDHGEVLDHASETLRGIRTQLRTLESRVRDRLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +
Sbjct: 174 SMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ LQQA+ + E +L LTEK +E+ L + LD + A+A Y+ + T
Sbjct: 234 NNSLQQAKVKEKQEIERILRVLTEKTAEYTEELFLDLQVLQTLDFIFAKARYAKAVKAT- 292
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
+P+ + I L KA HPLL
Sbjct: 293 ---------------KPIMNDTG------FIRLKKARHPLL------------------- 312
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
P ++ V DI + R +VITGPNTG
Sbjct: 313 -----------------------PPDQV----------VANDIELGRDFSTIVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA+SGLHI + E ++ F+ VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTVTLKTLGLLTLMAQSGLHIPADEGSEAAVFEHVFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ Q SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y
Sbjct: 400 VGILEQVNENSLVLFDELGAGTDPQEGAALAMSILDDVHRTNARV-LATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A I++RLGLP ++ A+ A E
Sbjct: 459 NREGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISKRLGLPDHIIGQAKSEMTAEHNE 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++ +I +E+ K + E + E + LHK L +++I+E + +K + + +
Sbjct: 519 VDTMIASLEQSKKRAEEELSETESIRKEAEKLHKEL---QQQIIELNS----KKDKMLEE 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A ++A+++ + +A ++H +LR K +H + +
Sbjct: 572 AE-------QQAAEKVKAAMKEAEDIIH----ELRTI-----------KEEHKSFKDHEL 609
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
K A + K ++ KR P GD V V +FG+KGT+++ + E
Sbjct: 610 INAKKRLEGAMPAFEKSKKPEKPKAQKRDFKP--GDEVKVLTFGQKGTLLE-KTGGNEWN 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K +K D+
Sbjct: 667 VQIGILKMKVKEKDL 681
>gi|457094647|gb|EMG25166.1| Recombination inhibitory protein MutS2 [Streptococcus parauberis
KRS-02083]
Length = 781
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 156/402 (38%), Positives = 234/402 (58%), Gaps = 47/402 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L PVP D+ ++ V+VITGPNTGGKTI LKT+GLA +M +SGL IL+ +K+ F+
Sbjct: 310 LQKPVPNDLHFSKDLTVIVITGPNTGGKTIMLKTLGLAQLMGQSGLPILADYGSKIAVFN 369
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I +I+ Q+T+ SLVL DE+GAGT+P EG +L M++
Sbjct: 370 GIFADIGDEQSIEQSLSTFSSHMTHIVSILDQATADSLVLFDELGAGTDPQEGASLAMAI 429
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + T+ATTH+ ELK ++F ENA MEFD L+PTY+ + GVPGRS+A
Sbjct: 430 LEEL-RLKEIKTMATTHYPELKAYGIESEFVENASMEFDSNSLQPTYRFMQGVPGRSNAF 488
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSR-NLH 679
IA RLGL G +V +A Q + +++N +I E+ ++Q LE H + + NL
Sbjct: 489 EIARRLGLAGHIVTDA-QNFTDTDSDVNRII---EKLESQTLESRKRLEHIKEVEQDNLK 544
Query: 680 KNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA-SQARSLVHK--R 736
N R +K+ + +R ++++K++ K AQ++ A +++ S++ K
Sbjct: 545 FN--RAVKKLYNEFSHERDKEMEKVT-----------KEAQEIVDLALAESESILAKLHD 591
Query: 737 AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE 796
QL+P H K Q L QT + K + V+K + K+
Sbjct: 592 KSQLKP------HEVIEAKTQ--LKKLVPQTDLSK--------NKVLK------QAKKLR 629
Query: 797 LPNVGDLVHVSSFGKKGTVI-KVEPSKEEIVVQVGNMKWIMK 837
VGD + VS++G++GT+I +++ K E QVG +K +K
Sbjct: 630 AARVGDDIIVSAYGQRGTLINQLKDQKWE--AQVGLIKMTLK 669
>gi|302758310|ref|XP_002962578.1| hypothetical protein SELMODRAFT_141299 [Selaginella moellendorffii]
gi|300169439|gb|EFJ36041.1| hypothetical protein SELMODRAFT_141299 [Selaginella moellendorffii]
Length = 825
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 192/591 (32%), Positives = 293/591 (49%), Gaps = 84/591 (14%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
V E+L +LEW +C ++ F T +G A + + +DS L D+T A ++
Sbjct: 3 VEAEALGLLEWPLVCRQIARFCATPMGVAAARGSNLPVGKNREDSEGLQDQTADAHKL-- 60
Query: 109 HGSCSLDLTGV-DLS-LVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
+ +L G D++ +V++AI E +V L+ + L L A
Sbjct: 61 --AGTLRFLGAKDVTKVVEAAIS----GEFCHVGELCSVKDTLECARRLHDQLFAKGGGG 114
Query: 167 ADL-YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIK-DSASPALKQSRGQVQM---- 220
+L + PL +++ L + L + I + +D I D AS L Q R Q Q
Sbjct: 115 LELERLELSPLQRIMQGLELCSELREDIDKCLDSKREIVLDRASTKLSQVRRQRQANMTE 174
Query: 221 LERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQ--LSFKGLLL-SSSSGIGSV 277
LE L + M+I +S+ +++ RLC+ A L G++L SS++G
Sbjct: 175 LESLLKETARMVIDAGGIDSM--TITTRRARLCVAVRASHKFLLPGGVVLDSSNTGATLF 232
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
+EP A+ LN+ Q A+ E + L ++ I + LN I +D+ ARA
Sbjct: 233 MEPEPALRLNNLEIQLSAAERAEEVAICRRLASRVAASAASILEQLNAITLVDLACARAK 292
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
++ G P F S SE + I + + HPLLL+
Sbjct: 293 HAKWLGAVKPAFF-----------------ESKSESKGVI-IEEIRHPLLLE-------- 326
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
A KG N PVPIDI + ++
Sbjct: 327 --------------------TALEKGLDRDNF--------------PVPIDIKVRDGVKI 352
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++I+GPNTGGKT+ LKT+G+A +MAK+GL++ +S ++PWFD +FAD+GD QSL Q+LS
Sbjct: 353 VIISGPNTGGKTVALKTLGIASIMAKAGLYLPASGNPRLPWFDRIFADVGDSQSLEQNLS 412
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFSGH++++ I S QSLVL+DEIG GT+P EG++L ++L+ FA++ L I TTH
Sbjct: 413 TFSGHMRRLCKITEASGPQSLVLIDEIGGGTDPAEGSSLATAVLKYFAKTVH-LCIVTTH 471
Query: 578 HGELKTLK-YSNDF-FENACMEFDEVKLKPTYKILWGVPGRSSAINIAERL 626
LKTL + D FENA +EFD L+PTY++LWG+PG+S+A+NIA+ L
Sbjct: 472 SASLKTLPIHDQDLPFENASVEFDLETLRPTYRVLWGLPGQSNALNIAKSL 522
>gi|210623508|ref|ZP_03293853.1| hypothetical protein CLOHIR_01803 [Clostridium hiranonis DSM 13275]
gi|210153566|gb|EEA84572.1| hypothetical protein CLOHIR_01803 [Clostridium hiranonis DSM 13275]
Length = 793
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 218/811 (26%), Positives = 374/811 (46%), Gaps = 155/811 (19%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
S +VLE+DK+ + + A +SLG + L + + RL + T A + K G
Sbjct: 5 SFKVLEFDKIIEILKTKASSSLGLHK-IENLEPSSDFEEVQYRLQETTEAQSILIKRGH- 62
Query: 113 SLDLTGVDLSLVKSAIREVRRA---SPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
V+L + + +V+RA + L P L V L+ + L SL +E+
Sbjct: 63 ------VNLGGIHDVLDKVKRAEIGASLDPGSLLMVADTLRAARVLSNSLSGDGEEEDFN 116
Query: 170 YIRFMPLTQ-MIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
Y P+ Q + L+++R + ++ + + I DSAS L+ R ++ + +
Sbjct: 117 Y----PIIQSLATSLYIHREIEDAVYNAIVSEIEIADSASHTLRDIRRKIVQKNQSIRSK 172
Query: 229 MDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAV 284
++ +I + + + + S+ G R + A+ S ++ SSSG IEP+S V
Sbjct: 173 LNTIISSATYQKYLQDSIISMRGDRFVVPVKAEYRSVVAGIVHDQSSSGATLFIEPMSIV 232
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVD--LDEIEKMLNGIIQLDVVNARATYSLSF 342
+N+EL++ L L E+ +++ L E+ KM+ I + + N + F
Sbjct: 233 EMNNELRK-------------LKLDEQEEIERILAELSKMIGEIAREIISNQEILEKIDF 279
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
IF K SL + + K++ ++ + + HPL
Sbjct: 280 ------IFAKG--KLSLEMKGIDPKLN---KDKSFVIKNGRHPL---------------- 312
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
L P ++ + I++ + LVITG
Sbjct: 313 --------------------------LDPKKV----------IANTIYLGDEFHTLVITG 336
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKT+ +KTVGL +M +SGLHI + + + +D++FADIGDEQS+ QSLSTFS H
Sbjct: 337 PNTGGKTVTIKTVGLFALMTQSGLHIPADFGSSMCVYDNIFADIGDEQSIEQSLSTFSSH 396
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
+ +I +I+ + T SLV+ DE+GAGT+P+EG AL +++LE +G+ IATTH+ ELK
Sbjct: 397 MTRIVSILDKVTEDSLVIFDELGAGTDPVEGAALAIAILEDVRMAGA-KCIATTHYSELK 455
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642
+ ENA +EFD L PTY++L GVPG+S+A I+++LGL V+ A++
Sbjct: 456 NYALTKKGVENAAVEFDVETLSPTYRLLIGVPGKSNAFEISKKLGLSEFVINRAKEFINT 515
Query: 643 ASAEINEVIIEMERFKTQFLEHVHEARHF---LMLSRNLH----KNLLRTRRKILEHCAS 695
+ E+ +++ +E+ + + E EA + + R+ + L + K++E S
Sbjct: 516 ENIELEDLLQNVEKNRIKAEEDRAEAEKLKTEIQMIRDAEAEKLEKLTNQKEKMMERARS 575
Query: 696 QRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA--------QQLRPSASQS 747
+ F S+ ++ +++ + R L +RA +QLR + S
Sbjct: 576 EAF--------------SITRQAKEEVDEIIKRLRELEQERASKEKNRQIEQLRKELTDS 621
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVS 807
+ Q TV + P AS +K++K VG+ V V
Sbjct: 622 MGSL--------------QPTVKSMIVPKVASKE-IKNLK------------VGEDVKVI 654
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMKWIMKF 838
+ ++GTV+ + K+E VVQ+G MK + +
Sbjct: 655 TLNQEGTVVSADDKKKEAVVQIGIMKMTLPY 685
>gi|302824584|ref|XP_002993934.1| hypothetical protein SELMODRAFT_236869 [Selaginella moellendorffii]
gi|300138206|gb|EFJ04981.1| hypothetical protein SELMODRAFT_236869 [Selaginella moellendorffii]
Length = 825
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 192/591 (32%), Positives = 294/591 (49%), Gaps = 84/591 (14%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
V E+L +LEW +C ++ F T +G A + + +DS L D+T A ++
Sbjct: 3 VEAEALGLLEWPLVCRQIARFCATPMGVAAARGSNLPVGKNREDSEGLQDQTADAHKL-- 60
Query: 109 HGSCSLDLTGV-DLS-LVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
+ +L G D++ +V++AI E +V L+ + L L A
Sbjct: 61 --AGTLRFLGAKDVTKVVEAAIS----GEFCNVGELCSVKDTLECARRLHDQLFAKGGGG 114
Query: 167 ADL-YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIK-DSASPALKQSRGQVQM---- 220
+L + PL +++ L + L + I + +D I D AS L Q R Q Q
Sbjct: 115 LELERLELSPLQRIMQGLELCSELREDIDKCLDSKREIVLDRASTKLSQVRRQRQANMTE 174
Query: 221 LERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQ--LSFKGLLL-SSSSGIGSV 277
L+ L + M+I +S+ +++ RLC+ A L G++L SS++G
Sbjct: 175 LDILLKETARMVIDAGGIDSM--TITTRRARLCVAVRASHKFLLPGGVVLDSSNTGATLF 232
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
+EP A+ LN+ Q A+ E + L ++ I + LN I+ LD+ ARA
Sbjct: 233 MEPEPALRLNNLEIQLSAAERAEEVAICRRLASRVAASAASILEQLNAIMLLDLACARAK 292
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
++ G P F S SE + I + + HPLLL+
Sbjct: 293 HAKWLGAVKPAFF-----------------ESKSESKGVI-IEEIRHPLLLE-------- 326
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
A KG N PVPIDI + ++
Sbjct: 327 --------------------TALEKGLDRDNF--------------PVPIDIKVRDGVKI 352
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++I+GPNTGGKT+ LKT+G+A +MAK+GL++ +S ++PWFD +FAD+GD QSL Q+LS
Sbjct: 353 VIISGPNTGGKTVALKTLGIASIMAKAGLYLPASGNPRLPWFDRIFADVGDSQSLEQNLS 412
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFSGH++++ I S QSLVL+DEIG GT+P EG++L ++L+ FA++ L I TTH
Sbjct: 413 TFSGHMRRLCKITEASGPQSLVLIDEIGGGTDPAEGSSLATAVLKYFAKTVH-LCIVTTH 471
Query: 578 HGELKTLK-YSNDF-FENACMEFDEVKLKPTYKILWGVPGRSSAINIAERL 626
LKTL + D FENA +EFD L+PTY++LWG+PG+S+A+NIA+ L
Sbjct: 472 SASLKTLPIHDQDLPFENASVEFDLETLRPTYRVLWGLPGQSNAVNIAKSL 522
>gi|372324775|ref|ZP_09519364.1| Recombination inhibitory protein [Oenococcus kitaharae DSM 17330]
gi|366983583|gb|EHN58982.1| Recombination inhibitory protein [Oenococcus kitaharae DSM 17330]
Length = 795
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 233/800 (29%), Positives = 381/800 (47%), Gaps = 132/800 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE+D++ + + SF T+ G+E L QL + S+ L +A + ++ G
Sbjct: 6 LTTLEFDEIKNRLDSFLVTAKGKEK-LAQLLPSGDAQRVSILLGQTDDALLIDRRRGGLP 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ T DL+ + + ++ + L +E + A LQ S+ + + IK++ I F
Sbjct: 65 IRATN-DLTEI---FKRIKLKAVLASSELADLNASLQSSQAV-IDFFQTIKDE----IWF 115
Query: 174 MPLTQMIMQLFVNR-----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L Q++ VNR L + + Q +D+ G + D+AS L R Q+ E + +L
Sbjct: 116 DNLQQIL--FLVNRLTDFSQLSQRLDQTIDDQGKMLDTASKKLAHIRKNTQLTETNIREL 173
Query: 229 MDMLIRNENNESLFLE---VSSIHGRLCIRTGAD-QLSFKGLLLSSS-SGIGSVIEPLSA 283
+ L + N++ +L +++ G L + A+ + F G++ S SG+ IEP +A
Sbjct: 174 L--LKMTKGNDAKYLSENVITTRDGVLVLPVKAENKKHFGGVVHDQSQSGLTLYIEPEAA 231
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGII-QLDVVNARATYSLSF 342
V LND L + +L+ +++ + L E K+ N +I +LD++ A+A + +
Sbjct: 232 VSLNDHLHDLEIDERREINAILIDISQSL-FPLYEQLKLNNELIGELDLIQAKARLANTM 290
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
P I +SE+E I L A HPLL
Sbjct: 291 DAIKPQI--------------------NSEKE--IDLQAARHPLL--------------- 313
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
PS+ + ++L H FI+ L+ITG
Sbjct: 314 ----------------------------PSDAVANDIKLGHD-----FIS-----LIITG 335
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKT+ +KT+GL +MA+SG+ I + + + + FD++FADIGDEQSL QSLSTFS H
Sbjct: 336 PNTGGKTVLMKTLGLLQLMAQSGIFITADKNSSIYVFDNIFADIGDEQSLEQSLSTFSSH 395
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
+ I II+ S + SLVLLDE+GAGT+P EG AL M+++E +E +L + TTH+ ELK
Sbjct: 396 MMNIKEIIADSDTDSLVLLDELGAGTDPSEGAALAMAIVENLSER-KILNLTTTHYPELK 454
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642
F NA MEFD L+PTY++L G+PG+S+AI IA RLG+ V++ A
Sbjct: 455 VFADQKPFAVNASMEFDLKTLRPTYRLLIGIPGQSNAITIARRLGVDKRVLERAEAYVDP 514
Query: 643 ASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQ 702
E+N +I + F+ Q L+ E + N K L + LE K +
Sbjct: 515 KDQELNNLIQGL-VFQRQDLDQQQEDLQRRLADVNSEKENLDRQSSELEQS------KAK 567
Query: 703 KISDAAAIARSLVHKSAQQLCPSASQARSLVHK-RAQQLRPSASQSLHCTKVGKNQHVLT 761
+ DA A +V + S+++ L+ + R+++L+ GKN+ L
Sbjct: 568 LLLDAKNEANHIV-------ASTRSESKKLLDQIRSERLKAGQGS-------GKNEQELN 613
Query: 762 SNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPS 821
Q DK+ + S+ K+ K + KR + +G+ V V+S+ + G + + S
Sbjct: 614 RIVNQ--FDKLRQ----NDSLEKN-KVLQKAKRAKQFRIGEDVMVTSYHQPGRITD-KVS 665
Query: 822 KEEIVVQVGNMKWIMKFTDI 841
E +Q+G +K + D+
Sbjct: 666 NHEWQIQMGILKMTVHENDL 685
>gi|340755208|ref|ZP_08691905.1| MutS2 protein [Fusobacterium sp. D12]
gi|419840320|ref|ZP_14363712.1| putative recombination and DNA strand exchange inhibitor protein
[Fusobacterium necrophorum subsp. funduliforme ATCC
51357]
gi|421499445|ref|ZP_15946489.1| MutS2 family protein [Fusobacterium necrophorum subsp. funduliforme
Fnf 1007]
gi|313685859|gb|EFS22694.1| MutS2 protein [Fusobacterium sp. D12]
gi|386908352|gb|EIJ73049.1| putative recombination and DNA strand exchange inhibitor protein
[Fusobacterium necrophorum subsp. funduliforme ATCC
51357]
gi|402269698|gb|EJU19022.1| MutS2 family protein [Fusobacterium necrophorum subsp. funduliforme
Fnf 1007]
Length = 778
Score = 236 bits (601), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 191/656 (29%), Positives = 307/656 (46%), Gaps = 117/656 (17%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + VD + IKD AS L+ R +ML + + + D L + F E V+ G
Sbjct: 133 ISKAVDSEKQIKDEASLDLRDIRIHKKMLAQNIRRKFDELFEEASIAVAFQERIVTERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ + D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVVPVKVD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVT 365
L L+E+++ DE+ K+ I+ LD + A+A + L P I
Sbjct: 250 LRLSEQIRNHQDEMYKIGTMILYLDRLQAKANFGLEEACHVPTI---------------- 293
Query: 366 SKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEK 425
+ + +YL KA HP +
Sbjct: 294 ------QGKEILYLEKARHPFI-------------------------------------- 309
Query: 426 DTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG 485
P E VP+ I + R+L+ITGPNTGGKT+ LKT GL +MA SG
Sbjct: 310 -----PKE---------KVVPLTFEIGKDYRILLITGPNTGGKTVALKTAGLLTLMALSG 355
Query: 486 LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIG 545
+ I +SE++K+ +F VFADIGDEQS+ QSLS+FS H+ + I+ + LVLLDE+G
Sbjct: 356 IPIPASEHSKIGFFQGVFADIGDEQSIEQSLSSFSAHVTNLQEILREVHRNCLVLLDELG 415
Query: 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKP 605
+GT+P EG+A MS+++ E I TTH+ E+K Y+ + E A MEFD L P
Sbjct: 416 SGTDPTEGSAFAMSIIDYLKEK-KCNAIITTHYSEVKAHGYNEEGIETASMEFDTATLSP 474
Query: 606 TYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHV 665
TY++L G+PG S+A+ IA+RLG+P ++ A+ + +I E++I + K++ L+ +
Sbjct: 475 TYRLLMGIPGESNALTIAKRLGVPQDIIDKAQSYISEDNKKI-ELMINNIKNKSESLDRM 533
Query: 666 HEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPS 725
L + +++ R+ LE ++ +K S + +
Sbjct: 534 QAELEGLREAARMNQQKWEEERRNLEREKNEILKKA-------------YEDSEKMMNEM 580
Query: 726 ASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKD 785
++A +L+ K Q+ S Q+ ++ KN ++L+S ++ + S+ K
Sbjct: 581 RAKASALIEK-IQKEENSKEQA---KQIQKNLNMLSSALKE--------EKNKTISITKT 628
Query: 786 IKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+K+ K GD V V + + +V+K+ KE VQ G +K + F +I
Sbjct: 629 MKKKANFKE------GDRVFVKNINQFASVLKINAMKESAQVQAGILKLEVPFDEI 678
>gi|310640954|ref|YP_003945712.1| muts2 protein [Paenibacillus polymyxa SC2]
gi|309245904|gb|ADO55471.1| MutS2 protein [Paenibacillus polymyxa SC2]
Length = 733
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 163/411 (39%), Positives = 220/411 (53%), Gaps = 51/411 (12%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L VPID+ + +++TGPNTGGKT+ LKT+GL +MA SGL + + +++ FD
Sbjct: 313 LEQVVPIDVELGNSYTSIIVTGPNTGGKTVTLKTIGLLSLMAMSGLFVPVEDESQLCVFD 372
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+++ADIGDEQS+ Q+LSTFS H+ I +I+ T +SLVLLDE+GAGT+P EG+AL +S+
Sbjct: 373 AIYADIGDEQSIEQNLSTFSSHMTNIISILKNMTPKSLVLLDEVGAGTDPAEGSALAVSI 432
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE G + +ATTH+ ELK Y NA MEFD L PTY++L GVPGRS+A
Sbjct: 433 LEHIHALGCRM-VATTHYSELKAYAYERKGIINASMEFDVATLSPTYRLLVGVPGRSNAF 491
Query: 621 NIAERLGLPGIVVQNARQ---------LYGAASAEINEVIIEMERFKTQFLEHVHEARHF 671
IAERLGLPG ++ AR + AS E N + E ER K + L EA
Sbjct: 492 AIAERLGLPGRILDYARGEVTEEDQRVEHMIASLEQNRLTAEQEREKAEQLRKEMEA--- 548
Query: 672 LMLSRNLHKNLLRTRRKI-LEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
LRTR + L+ SQR R ++K D AR LV K AR
Sbjct: 549 -----------LRTRHQTELDKLESQRDRMLEKAEDE---ARVLVDK-----------AR 583
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
S K LR A + K +H L + ++ +D+ E S+ + I
Sbjct: 584 SEAEKIITDLRRLAQEEGASVK----EHKLIAARKE--LDEAEPKQRKKSTAKRSI---- 633
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
RT GD V V S KKG V+++ SKE I VQ+G MK + D+
Sbjct: 634 -TTRTRSIMAGDEVSVHSLNKKGHVVELTGSKEAI-VQLGIMKMKVSLDDL 682
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 148/302 (49%), Gaps = 22/302 (7%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHGSC 112
+ LE+ K+ + +S +A+T+ G++ L S + + + L+ DE AA ++ G
Sbjct: 6 FKTLEYQKILNKLSHYAQTATGQQTALRLQPSDDLEHIKKLLKGTDEAYAADRLK--GVL 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
S + VD++ A++ R L P E L + +Q + +Q+ + + +E+
Sbjct: 64 SFNGV-VDIT---PAVKRARIGGTLSPQELLGIRTTVQAARRIQVYVTSLHEEN------ 113
Query: 173 FMPLTQMIM---QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
P+ ++ QL RSL SI +DE+ + DSAS L Q R +++ E ++ + +
Sbjct: 114 --PVETLLYWSEQLSEQRSLENSIKGCIDENAEVLDSASTELSQIRRELRSGEVRIREKL 171
Query: 230 DMLIRNEN-NESLFLEVSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVP 285
D +IR+ ++ L ++ +I G R I A+ S+ G ++ SG G+ IEP S V
Sbjct: 172 DSMIRSSTVSKMLQDQLITIRGDRFVIPVKAEYRSYFGGIVHDQSGSGATLFIEPESIVA 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
+N++L++ R + E +L LT + D + ++ + LD + A+A + T
Sbjct: 232 MNNKLRETRLREEREIEVILQKLTALVAEQADMLLYDVDILGNLDFIFAKARLAREMKAT 291
Query: 346 SP 347
P
Sbjct: 292 LP 293
>gi|159463342|ref|XP_001689901.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283889|gb|EDP09639.1| predicted protein [Chlamydomonas reinhardtii]
Length = 1007
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 193/640 (30%), Positives = 298/640 (46%), Gaps = 93/640 (14%)
Query: 38 AVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLL 97
A + D+ + +ESL +LEW +C V+ F TS+ + ++ +DS LL
Sbjct: 60 ATVEVDEHWAAAEHESLAILEWPAVCKQVACFCGTSVAADLVAGGGLPRGRSREDSELLL 119
Query: 98 DETNAAIEM-------------QKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALA 144
+T A+E + + + LTG L V S +
Sbjct: 120 QQTQEALEAGLEVGGLFDIRPAAEAAAGGVCLTGKQLEGVASTLE--------------- 164
Query: 145 VVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLF-VNRSLIKSIMQVVDEDGSI 203
A + E + + + ++ +R+ L + + R+L+++I + + G +
Sbjct: 165 --AAFELKERVTVPAQGPQQQQQQGGLRYPSLAALAASITDEERTLLRAIRGCI-QYGGV 221
Query: 204 KDSASPALKQSRGQVQMLERKLYQLMDMLIRN--ENNESLFLEVSSIHGRLCI--RTGAD 259
D+AS AL R + Q + +L ++ R + + VS I GR CI R G
Sbjct: 222 SDAASEALAAVRAERQANKERLRAEVEGWARQLQQKGAAEAGAVSLIRGRFCIGVRAGRQ 281
Query: 260 QLSFKG--LLLSSSSGIGSVIEPLSAVPLNDELQQARASVTKAEED----VLLALTEKMQ 313
KG L SS+G +EP AV LN+ A A + + EE VL L+ +
Sbjct: 282 GELPKGSVRLGQSSTGATLYLEPKPAVELNN----AEALLAEREEGEVVRVLSMLSTLLA 337
Query: 314 VDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSER 373
++ ++++ + LDVV ARA ++ G P + T +P S
Sbjct: 338 KRAPQLMRLVDCVTALDVVAARAKHARWLSGVRP----------AFTADPSESP------ 381
Query: 374 EWTIYLPKAYHPLLLQQHKQKTQQAW--------KDLESANT-ELRRRKLYGGNAARKGE 424
++P A HP+L+Q+ Q +D ++A ELRR + + R GE
Sbjct: 382 ---FWVPGALHPVLMQRGLPPLPQPPSVDDNRFDRDFQAAPAWELRR--VLTPDGPRPGE 436
Query: 425 ----KDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVM 480
V P P+D+ + V+ ITGPNTGGKT+ LKT GL +
Sbjct: 437 LADGSAAGRGSGGGAVDDRAALLPRPLDLRVPSSRAVVAITGPNTGGKTVTLKTAGLMTL 496
Query: 481 MAKSGLHILSSEYA------------KVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
MA++GL + A ++ WFD V ADIGD QSL Q+LSTFSGH+++I
Sbjct: 497 MAQAGLFLPCDPTARAEAAAAAAGTPRLAWFDRVLADIGDAQSLQQNLSTFSGHIRRIKQ 556
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I++ + +SLVLLDE+G+GT+PLEG AL ++L+ AE LT+ATTHH ELK +
Sbjct: 557 ILAVAGPRSLVLLDEVGSGTDPLEGAALARAVLDRLAEQAH-LTLATTHHAELKRASEED 615
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+ N M FD L+PTY++ WG G S+A++IAE LG
Sbjct: 616 GRYVNVSMAFDTATLRPTYRLCWGAAGASNALDIAETLGF 655
>gi|291545360|emb|CBL18468.1| MutS2 family protein [Ruminococcus sp. SR1/5]
Length = 793
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 214/761 (28%), Positives = 350/761 (45%), Gaps = 143/761 (18%)
Query: 103 AIEMQKHGSCS--LDLTGVDLSLVKSAIREVRR---ASPLRPNEALAVVALLQFSETLQL 157
A+++Q H + + G+ VK ++R S L E L+V +LL+ + ++
Sbjct: 45 AMQLQTHDALARLFKKGGISFGSVKDIRGTLKRLTVGSALNAPELLSVCSLLENTGRVKA 104
Query: 158 SLRA----AIKEDAD-LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALK 212
R+ + + D ++ PLT + + I + + + I D AS L+
Sbjct: 105 YSRSDRDDGMTDSLDGMFAALEPLTPLSTE----------IRRCILSEDEISDDASSTLR 154
Query: 213 QSRGQVQMLERKLYQLMDMLI----RNENNESLFLEVSSIHGRLCIRTGADQLSFKGL-- 266
Q R ++ +++ + L+ RN +S+ ++ GR CI A+ +KG
Sbjct: 155 QIRRSIKATNDRIHTQLSSLVAGSARNYLQDSV---ITMRDGRYCIPVKAE---YKGQVP 208
Query: 267 -LLSSSSGIGSV--IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKML 323
++ S GS IEP++ V LN+++++ K E +L +L++++ +L+ I L
Sbjct: 209 GMIHDQSATGSTLFIEPMAVVKLNNDIRELELKEQKEIEVILASLSQQVAAELEAIHADL 268
Query: 324 NGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAY 383
+ ++QLD + ARA L DM S EPV + E I L +A
Sbjct: 269 SIMVQLDFIFARAA-------------LAMDMNAS---EPVFNT------EGRIRLRQAR 306
Query: 384 HPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAH 443
HPL+ K+K
Sbjct: 307 HPLI---DKKKA------------------------------------------------ 315
Query: 444 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 503
VPIDI + +LV+TGPNTGGKT+ LKTVGL MM +SGLHI + + +++ F V+
Sbjct: 316 -VPIDIRLGDDFDLLVVTGPNTGGKTVSLKTVGLLTMMGQSGLHIPALDRSELALFREVY 374
Query: 504 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 563
ADIGDEQS+ QSLSTFS H+ + + + + SLVL DE+GAGT+P EG AL +++L
Sbjct: 375 ADIGDEQSIEQSLSTFSSHMTNVVSFLKSADQDSLVLFDELGAGTDPTEGAALAIAILSH 434
Query: 564 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIA 623
E G + T+ATTH+ ELK S ENAC EFD L+PTY++L GVPG+S+A I+
Sbjct: 435 LHEQG-IRTMATTHYSELKIYALSTPGVENACCEFDVETLRPTYRLLIGVPGKSNAFAIS 493
Query: 624 ERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLL 683
+LGLP ++ A++ +V+ +E+ + E + L K+L
Sbjct: 494 SKLGLPDFIIDKAKEQISEQDESFEDVLTSLEQSRVTIENERAEIARYKEQVEELKKSLQ 553
Query: 684 RTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPS 743
K+ E RK + + +A A +++ + + A Q L HK
Sbjct: 554 EKEEKLDE-------RKERILREANEQAHAILRDTKEY----ADQTMKLFHKF------- 595
Query: 744 ASQSLHCTKVGKNQHVLTSNFQ---QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+ HV T++ + Q ++ SS + K ++K ++L ++
Sbjct: 596 -----------QKDHVDTASVEKERQNLKKRMSKAENGMSSRQQKQKPKKQLKPSDL-SL 643
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V S KGTV S+ + VQ+G ++ + +D+
Sbjct: 644 GDTVKVLSLNLKGTVSSHPDSRGYLFVQMGIIRSKVHISDL 684
>gi|32487407|emb|CAE05741.1| OSJNBb0017I01.21 [Oryza sativa Japonica Group]
Length = 921
Score = 235 bits (600), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 192/613 (31%), Positives = 302/613 (49%), Gaps = 61/613 (9%)
Query: 35 STVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSL 94
S VA + K+ RV E+ LEW +C ++ FA T+ GR A + ++ ++S
Sbjct: 59 SPVAAETPEAKQMRVETEA--ALEWGGVCARLAGFASTAAGRAACGEGRVPVGRSREESE 116
Query: 95 RLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSET 154
RLL++T AA + LD GV+ A R +R E V ++ +
Sbjct: 117 RLLEQTAAAALLPA----PLDFGGVEDVSAAIAAAAGARLLAVR--EICGVGRSIRAARR 170
Query: 155 LQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIK-DSASPAL-- 211
+ L+ +E D + PL ++ L++ I +D S+ D AS L
Sbjct: 171 VFDQLKTLSEETPDGR-SYTPLLDIMQDCDFLTELVQRIEFCLDYTLSVVLDRASDKLAT 229
Query: 212 --KQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQ--LSFKGLL 267
K+ R + MLE L + + +S V+ R+C+ A L G++
Sbjct: 230 IRKERRKNIDMLESLLRDTSTKIFQGGGIDSPV--VTKRRSRMCVGVKASHKHLVPGGIV 287
Query: 268 LSSS-SGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLD-EIEKMLNG 325
LSSS SG +EP A+ LN+ ++ + +AEE +L L D + +I ++
Sbjct: 288 LSSSGSGATYFMEPRDAIRLNN-MEVKLSGDERAEELAILGLLTSSIADSEMKIRHLMGK 346
Query: 326 IIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHP 385
I++LD+ AR +Y+L P F +D L + E ++++ HP
Sbjct: 347 ILELDLACARGSYALWINAVRP-AFTDRDSDTQL----------NPNSECSVFIEGIQHP 395
Query: 386 LLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV 445
LLL+Q +++ T + ++ L P+
Sbjct: 396 LLLEQSLSMVKES----------------------------TRVGKGQLSDEHLVSPMPI 427
Query: 446 PIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFAD 505
P+D+ + TR++VI+GPNTGGKT +KT+GLA +M+K+G+ + ++PWFD V AD
Sbjct: 428 PLDMQVRNDTRIIVISGPNTGGKTATMKTLGLASLMSKAGMFFPAKGTPRLPWFDQVLAD 487
Query: 506 IGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565
IGD QSL SLSTFSGH+ ++ I+ + SLVL+DEIG+GT+P +G AL S+L+ A
Sbjct: 488 IGDHQSLEHSLSTFSGHISRLRKIVQVVSKDSLVLIDEIGSGTDPSDGVALSTSILKYLA 547
Query: 566 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAER 625
S L I TTH+ +L LK +D FENA MEF L+PTY+ILWG G S+A++IA+
Sbjct: 548 -SRLNLAIVTTHYADLSRLKAVDDRFENAAMEFCLETLQPTYQILWGSTGNSNALSIAKS 606
Query: 626 LGLPGIVVQNARQ 638
+G V+ A++
Sbjct: 607 IGFDQKVLARAQE 619
>gi|443632188|ref|ZP_21116368.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
gi|443348303|gb|ELS62360.1| recombination and DNA strand exchange inhibitor protein [Bacillus
subtilis subsp. inaquosorum KCTC 13429]
Length = 785
Score = 235 bits (600), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 227/794 (28%), Positives = 372/794 (46%), Gaps = 124/794 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREA--TLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L LE+ K+ V A +SLG+E L SI++ + L +DE +A I ++
Sbjct: 6 LSALEFHKVKEQVIEHAASSLGKEMLLELKPSASIDEI-KKQLDEVDEASAIIRLRGQAP 64
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++ A+R S L P+E + LL + ++ + ++ D+ +
Sbjct: 65 FG------GLTDIRGALRRAEIGSVLSPSEFTEISGLLYAVKQMKHFISQMAEDGVDIPL 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ Q QL L + I +D+ G + D AS L+ R Q++ LE ++ ++
Sbjct: 119 ----IHQHAEQLITLSDLERDINSCIDDHGEVLDHASGTLRGIRTQLKTLESRIRDRLES 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R+ + + + V+ + R I + S G ++ +SSSG IEP + V +N
Sbjct: 175 MLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDMN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQQA+ + E +L LTE +E+ + L + LD + A+A Y+ + T
Sbjct: 235 NSLQQAKVKEKQEIERILRVLTEHTAEHTEELFQDLQVLQTLDFIFAKARYAKAVKAT-- 292
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+P+ + + L KA HPLL
Sbjct: 293 --------------KPIVND------NGFVRLKKARHPLL-------------------- 312
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
P ++ V DI + +VITGPNTGG
Sbjct: 313 ----------------------PPDQV----------VANDIELGGDFSTIVITGPNTGG 340
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT+GL +MA+SGLHI + E ++ F+ VFADIGDEQS+ QSLSTFS H+ I
Sbjct: 341 KTVTLKTLGLLTLMAQSGLHIPADEGSEAAVFEHVFADIGDEQSIEQSLSTFSSHMVNIV 400
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
+I+ SLVL DE+GAGT+P EG AL MS+L+ + + + +ATTH+ ELK Y+
Sbjct: 401 DILEHVNENSLVLFDELGAGTDPQEGAALAMSILDDVHRTNARV-LATTHYPELKAYGYN 459
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
+ NA +EFD L PTYK+L GVPGRS+A I++RLGLP ++ A+ A E+
Sbjct: 460 REGVMNASVEFDIETLSPTYKLLIGVPGRSNAFEISKRLGLPDHIIGQAKSEMTAEHNEV 519
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
+ +I +E+ K + E + E + LHK L +++I+E + +K + + +A
Sbjct: 520 DTMIASLEQSKKRAEEELSETESIRKEAEKLHKEL---QQQIIELNS----KKDKMLEEA 572
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
++A+++ + +A ++H +LR K +H + +
Sbjct: 573 E-------QQAAEKVKAATKEAEDIIH----ELRSI-----------KEEHKSFKDHELI 610
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
K A + K ++ KR P GD V V +FG+KGT+++ + E V
Sbjct: 611 NAKKRLEGAVPTFEKSKKPEKPKTQKRDFKP--GDEVKVLTFGQKGTLLE-KTGGNEWNV 667
Query: 828 QVGNMKWIMKFTDI 841
Q+G +K +K D+
Sbjct: 668 QIGILKMKVKEKDL 681
>gi|320162401|ref|YP_004175626.1| MutS2 family protein [Anaerolinea thermophila UNI-1]
gi|319996255|dbj|BAJ65026.1| MutS2 family protein [Anaerolinea thermophila UNI-1]
Length = 808
Score = 235 bits (600), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 234/810 (28%), Positives = 372/810 (45%), Gaps = 146/810 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
++L +LE+ K+ ++ +A + A + + + +++ RL T+ A + S
Sbjct: 4 KTLHILEYPKILERLAGYA--AFSASAQMARNLRPTRRLEEAQRLQKITSEARLLLSLNS 61
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ + G S ++ + R L P E LA+ L + T+ SL KE
Sbjct: 62 -EIGVGGA--SDIRPLVERAARHGVLEPAELLAIKDTLISARTIARSLER--KEST---- 112
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQM-LERKLYQLMD 230
F L ++ L LI++I +VV E G I DSAS L + R +V++ ER + +L
Sbjct: 113 -FPLLAEIAAPLVPPPGLIETISRVVSERGEILDSASETLARLRREVKVAFERLMTRLEH 171
Query: 231 MLIRNENNESLFLEVSSI---HGRLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLS 282
M+ N+ + L+ S I +GR I A+ FKG + S SSSG +EPL+
Sbjct: 172 MV--NDPRIAPMLQDSLITQRNGRYVIPLRAE---FKGQVRSIIHDQSSSGATLFVEPLA 226
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
V LN+E + + V E +L L++++ + + + + + D A A Y+
Sbjct: 227 VVDLNNEWHELQLRVRDEERRILAELSDQVGAHFEALAALTEALARFDFALACAKYA--- 283
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSERE----WTIYLPKAYHPLLLQQHKQKTQQA 398
+D++ S EPV + R TI L +A HPL
Sbjct: 284 ----------EDLRAS---EPVLVRYRHPARPDHPGSTIRLIQARHPL------------ 318
Query: 399 WKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVL 458
L P + VPID+ + T +
Sbjct: 319 ------------------------------LDPQTV----------VPIDVDLDEDTFCV 338
Query: 459 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 518
VITGPNTGGKT+ LKTVGL +MA+SGLHI + +++ F++VFADIGDEQS+ QSLST
Sbjct: 339 VITGPNTGGKTVTLKTVGLLALMAQSGLHIPARSGSELSVFENVFADIGDEQSIEQSLST 398
Query: 519 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578
FSGH+K I I+ ++ + +LVL DE+GAGT+P EG AL ++L E IA TH+
Sbjct: 399 FSGHIKNISRILRRANTHTLVLFDELGAGTDPQEGAALARAILAHMVEKRIPCLIA-THY 457
Query: 579 GELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
ELK ++ NA MEFD L+PTY + G+PGRS+A+ IA RLGL ++++ AR
Sbjct: 458 PELKIFAHNTPGVINASMEFDLNTLRPTYHLTLGLPGRSNALAIASRLGLDPVIIEKAR- 516
Query: 639 LYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL----HKNLLRTRRKI---LE 691
AEI+ + E L +H R +R + + R R ++ LE
Sbjct: 517 ------AEISPEELRAE----NLLNEIHRQRDAARRARERAEKEQREVERLRAELAARLE 566
Query: 692 HCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCT 751
+R R ++K+ + A + + +++ +AR + + L+P +S
Sbjct: 567 KIEEERQRLLEKVREEAEQEAEALRREVEEVRRQLMRARQPL----EALQPLREKSEALV 622
Query: 752 KVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGK 811
+ + V T +TT+ +HP A GD V V S G
Sbjct: 623 ENARTALVSTPAAGETTLPP-QHPFRA----------------------GDKVRVRSLGM 659
Query: 812 KGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+G + + +E+ VQVGN++ + +D+
Sbjct: 660 QGVITAL--GEEDAEVQVGNLRVRARLSDL 687
>gi|335356987|ref|ZP_08548857.1| DNA mismatch repair protein [Lactobacillus animalis KCTC 3501]
Length = 786
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 218/774 (28%), Positives = 346/774 (44%), Gaps = 126/774 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
+SL +LE+DK+ + A T +G+ S + LDE + K G+
Sbjct: 4 KSLAILEYDKIKQKLFQHATTEMGKRQVKRLRPSTD---------LDEIQVKLLQTKDGA 54
Query: 112 CSLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
L L G L+L+ ++ + + L E + +L+ + + A A
Sbjct: 55 DILRLKGGVPVPQLTLITDHLKRLEIGATLNGKELAEISQVLRSANEVHRFFMAL----A 110
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
D + L ++ QL L K + ++ DG + D AS L+ R Q+ E +
Sbjct: 111 DEKVELNYLYELEEQLETLPQLAKRLQVSLEADGYVTDDASSLLRSLRRQISTTEATIRN 170
Query: 228 LMDMLIRNENNESL-FLEVSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAV 284
+ L R N + L V+ + R I A+ F G++ SSSG IEP V
Sbjct: 171 RLVALTRGNNAKYLSGANVTIRNDRYVIPVRAEHKGKFGGIVHDQSSSGQTYFIEPREIV 230
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+ L+Q + + + +L L+E+ E+ + + D +NA+A Y+
Sbjct: 231 ELNNRLKQEQVAEKEEILRILRELSEETMPYTAELAHDAKILGEFDFINAKAKYAKELKA 290
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
T P + +D IYL + +HPL
Sbjct: 291 TQPLLSEQKD----------------------IYLRQVWHPL------------------ 310
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
LE+ V DI + + + +VITGPN
Sbjct: 311 ----------------------------------LEMDKAVKNDIILGKDYQAMVITGPN 336
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKTI LKT+GL MM +SGL I + E +++ F +FADIGDEQS+ QSLSTFS H+
Sbjct: 337 TGGKTITLKTLGLVQMMGQSGLFIPAFENSRIGVFKDIFADIGDEQSIEQSLSTFSSHMT 396
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I NI+ SLVL DE+GAGT+P EG AL +++L+A SG+ + +ATTH+ ELKT
Sbjct: 397 NIVNILEHVDQDSLVLFDELGAGTDPQEGAALAIAILDAIGASGAYV-LATTHYPELKTY 455
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
+ NA MEF+E L+PTY++L G+PG+S+A NI+ERLGL +V AR L S
Sbjct: 456 GFERTQTINASMEFNEETLRPTYRLLIGIPGQSNAFNISERLGLSQTIVAAARNLVAKDS 515
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRF-RKVQK 703
++N +I ++ + Q E + L ++ LH +L A +RF + ++
Sbjct: 516 QDLNNMIADLVAKRRQAEEEAISLQANLDEAQKLHHDLA---------TAYERFVNEREQ 566
Query: 704 ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+ D A + A ++ A Q + + L+ +A T++ +N+ +
Sbjct: 567 MQDQA-------KQKANEIVEQAKQKADEIIGELRALKQNA-----ATEIKENELIDA-- 612
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
K + A +K K R KR + D V V+S+G++G +++
Sbjct: 613 -------KAQLNALEQKRALKKNKVLKRAKRKQAFKPNDDVMVTSYGQRGVLVQ 659
>gi|386040047|ref|YP_005959001.1| DNA mismatch repair protein mutS [Paenibacillus polymyxa M1]
gi|343096085|emb|CCC84294.1| DNA mismatch repair protein mutS [Paenibacillus polymyxa M1]
Length = 789
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 163/411 (39%), Positives = 220/411 (53%), Gaps = 51/411 (12%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L VPID+ + +++TGPNTGGKT+ LKT+GL +MA SGL + + +++ FD
Sbjct: 313 LEQVVPIDVELGNSYTSIIVTGPNTGGKTVTLKTIGLLSLMAMSGLFVPVEDESQLCVFD 372
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+++ADIGDEQS+ Q+LSTFS H+ I +I+ T +SLVLLDE+GAGT+P EG+AL +S+
Sbjct: 373 AIYADIGDEQSIEQNLSTFSSHMTNIISILKNMTPKSLVLLDEVGAGTDPAEGSALAVSI 432
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE G + +ATTH+ ELK Y NA MEFD L PTY++L GVPGRS+A
Sbjct: 433 LEHIHALGCRM-VATTHYSELKAYAYERKGIINASMEFDVATLSPTYRLLVGVPGRSNAF 491
Query: 621 NIAERLGLPGIVVQNARQ---------LYGAASAEINEVIIEMERFKTQFLEHVHEARHF 671
IAERLGLPG ++ AR + AS E N + E ER K + L EA
Sbjct: 492 AIAERLGLPGRILDYARGEVTEEDQRVEHMIASLEQNRLTAEQEREKAEQLRKEMEA--- 548
Query: 672 LMLSRNLHKNLLRTRRKI-LEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
LRTR + L+ SQR R ++K D AR LV K AR
Sbjct: 549 -----------LRTRHQTELDKLESQRDRMLEKAEDE---ARVLVDK-----------AR 583
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
S K LR A + K +H L + ++ +D+ E S+ + I
Sbjct: 584 SEAEKIITDLRRLAQEEGASVK----EHKLIAARKE--LDEAEPKQRKKSTAKRSI---- 633
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
RT GD V V S KKG V+++ SKE I VQ+G MK + D+
Sbjct: 634 -TTRTRSIMAGDEVSVHSLNKKGHVVELTGSKEAI-VQLGIMKMKVSLDDL 682
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 148/302 (49%), Gaps = 22/302 (7%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHGSC 112
+ LE+ K+ + +S +A+T+ G++ L S + + + L+ DE AA ++ G
Sbjct: 6 FKTLEYQKILNKLSHYAQTATGQQTALRLQPSDDLEHIKKLLKGTDEAYAADRLK--GVP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
S + VD++ A++ R L P E L + +Q + +Q+ + + +E+
Sbjct: 64 SFNGV-VDIT---PAVKRARIGGTLSPQELLGIRTTVQAARRIQVYVTSLHEEN------ 113
Query: 173 FMPLTQMIM---QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
P+ ++ QL RSL SI +DE+ + DSAS L Q R +++ E ++ + +
Sbjct: 114 --PVETLLYWSEQLSEQRSLENSIKGCIDENAEVLDSASTELSQIRRELRSGEVRIREKL 171
Query: 230 DMLIRNEN-NESLFLEVSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVP 285
D +IR+ ++ L ++ +I G R I A+ S+ G ++ SG G+ IEP S V
Sbjct: 172 DSMIRSSTVSKMLQDQLITIRGDRFVIPVKAEYRSYFGGIVHDQSGSGATLFIEPESIVA 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
+N++L++ R + E +L LT + D + ++ + LD + A+A + T
Sbjct: 232 MNNKLRETRLREEREIEVILQKLTALVAEQADMLLYDVDILGNLDFIFAKARLAREMKAT 291
Query: 346 SP 347
P
Sbjct: 292 LP 293
>gi|403384307|ref|ZP_10926364.1| MutS2 protein [Kurthia sp. JC30]
Length = 789
Score = 235 bits (599), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 226/803 (28%), Positives = 369/803 (45%), Gaps = 136/803 (16%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATL-----TQLWSINQTYQDSLRLLDETNAAIEMQ 107
+L+ LE+DK+ V++FA SLG E T+L + Q LL E + A+ +
Sbjct: 6 ALKTLEFDKVREQVATFATCSLGVEGIEKLVPETELEKVQQ-------LLAEMDEALSIL 58
Query: 108 K-HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
+ GS + + V+ R + L P E + + + ++ S + + +
Sbjct: 59 RIKGSVPMG----GIFDVRPHARRAQIGGMLSPKELMEISSTIRASRIFREFIEVV---E 111
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
AD +R +L + L I +D++ + DSAS L+ R Q++ E ++
Sbjct: 112 ADDEVRIPLFVAKKEELPILTGLQHEINSCIDDNAKVMDSASQTLRSIRTQLRTQEGRVR 171
Query: 227 QLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLS 282
+ L R + + + ++ + R I A+ S G ++ S+SG IEP +
Sbjct: 172 DRLASLTRGSSAAKMLSDTIITIRNDRFVIPVKAEYRSHYGGVIHDQSASGQTLYIEPDA 231
Query: 283 AVPLNDELQQARASVTKAEED-VLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
V N+E+Q + KAE D +L+ L+ K+Q + ++ + ++DVV A+A Y +
Sbjct: 232 VVQANNEIQGLKVK-EKAEVDRILMELSAKVQEVAHSLFVLVQILGEIDVVLAKAKYGQA 290
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
T P + ++R + + L KA HPLL D
Sbjct: 291 HKCTMPKM---------------------NDRGY-MKLTKARHPLL-------------D 315
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
+++A V DI +VIT
Sbjct: 316 VDTA---------------------------------------VANDIEFGDDVTAIVIT 336
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ LKT+GL +MA++GL + + + +++ F +FADIGDEQS+ QSLSTFS
Sbjct: 337 GPNTGGKTVTLKTIGLCTLMAQAGLPVPALDGSELAVFTQLFADIGDEQSIEQSLSTFSS 396
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+ I +I+++ SLVL DE+GAGT+P EG AL +S+L+ G+ + +ATTH+ EL
Sbjct: 397 HMVNIVDILNEFDHDSLVLFDELGAGTDPQEGAALAISILDEVHGRGARV-MATTHYPEL 455
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K Y+ NA MEF+ L PTY++L GVPGRS+A I++RLGLP +++ A+ G
Sbjct: 456 KAYGYNRPGVVNASMEFNVDTLSPTYRLLIGVPGRSNAFEISKRLGLPDNIIETAKSYTG 515
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
+ E+ +I +E + Q + E+ L S L +L KI E+ A++
Sbjct: 516 TETHEVESMIASLETSRRQAEKDAEESARLLAESNALRADL---DAKIAEYEATK----- 567
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLT 761
+L A + + A+Q S LH + NQ V
Sbjct: 568 ------------------DELAKKAKEKARKIVAEAKQEAESIIDELHKMQHRANQAVK- 608
Query: 762 SNFQQTTVD---KVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKV 818
+ +D ++E A A + + KQ R + VGD V V S+G++GT++K
Sbjct: 609 ---EHEIIDARKRLESAAPAPENRILK-KQRQLNARAQTLQVGDEVKVLSYGQRGTLLKK 664
Query: 819 EPSKEEIVVQVGNMKWIMKFTDI 841
+ S E VQ+G +K + D+
Sbjct: 665 DKSG-EWHVQIGILKMKLPEEDL 686
>gi|374322955|ref|YP_005076084.1| MutS2 protein [Paenibacillus terrae HPL-003]
gi|357201964|gb|AET59861.1| MutS2 protein [Paenibacillus terrae HPL-003]
Length = 789
Score = 235 bits (599), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 165/411 (40%), Positives = 221/411 (53%), Gaps = 51/411 (12%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L VPID+ + +++TGPNTGGKT+ LKT+GL +MA SGL + + +++ FD
Sbjct: 313 LEQVVPIDVELGNSYTSIIVTGPNTGGKTVTLKTIGLLSLMAMSGLFVPVEDESQLCVFD 372
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+++ADIGDEQS+ Q+LSTFS H+ I +I+ T +SLVLLDE+GAGT+P EG+AL +S+
Sbjct: 373 AIYADIGDEQSIEQNLSTFSSHMTNIISILKNMTPKSLVLLDEVGAGTDPAEGSALAVSI 432
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE G + +ATTH+ ELK Y NA MEFD L PTY++L GVPGRS+A
Sbjct: 433 LEHMHALGCRM-VATTHYSELKAYAYERKGIINASMEFDVATLSPTYRLLVGVPGRSNAF 491
Query: 621 NIAERLGLPGIVVQNARQ---------LYGAASAEINEVIIEMERFKTQFLEHVHEARHF 671
IAERLGLPG ++ AR + AS E N + E ER K + L E
Sbjct: 492 AIAERLGLPGRILDYARGEVTEEDQRVEHMIASLEQNRLTAEQEREKAEQLRGEMEE--- 548
Query: 672 LMLSRNLHKNLLRTRRKI-LEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
LRTR + LE +QR R ++K +D ARSLV K AR
Sbjct: 549 -----------LRTRHQNELEKLEAQRERLLEKAADE---ARSLVDK-----------AR 583
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
S LR A + K +H L + ++ +D+ E P S VK P
Sbjct: 584 SEAEIIIADLRKLAQEEGASVK----EHRLIAARKE--LDEAE-PKQRKKSAVK----RP 632
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
RT GD V V S KKG V+++ SK E VVQ+G MK + D+
Sbjct: 633 AATRTRSIVAGDEVSVHSLNKKGHVVELSGSK-EAVVQLGIMKMKVSLDDL 682
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 146/302 (48%), Gaps = 22/302 (7%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGRE-ATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
+ LE+ K+ + +S +A+T++G++ A Q + + L+ DE AA ++ G
Sbjct: 6 FKTLEYQKILNKLSHYAQTAIGQQTAQRLQPSDDLEHIKKLLKGTDEAYAADRLK--GVP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
S + VD + A++ R L P E L + +Q + +Q+ + + +E+
Sbjct: 64 SFNGV-VD---IIPAVKRARIGGTLSPQELLGIRTTVQAARRVQVYVASLHEEN------ 113
Query: 173 FMPLTQMIM---QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
P+ ++ QL R L SI +DE+ + DSAS L Q R +++ E ++ + +
Sbjct: 114 --PVETLLYWSEQLSEQRGLENSIKGCIDENAEVLDSASTELSQIRRELRSGEVRIREKL 171
Query: 230 DMLIRNEN-NESLFLEVSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVP 285
D +IR+ ++ L ++ +I G R I A+ S+ G ++ SG G+ IEP S V
Sbjct: 172 DSMIRSSTVSKMLQDQLITIRGDRFVIPVKAEYRSYFGGIVHDQSGSGATLFIEPESIVA 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
+N++L++ R + E +L LT + D + ++ + LD + A+A + T
Sbjct: 232 MNNKLRETRLREEREIEVILQKLTALVAEQADMLLYDVDVLGTLDFIFAKARLAREMKAT 291
Query: 346 SP 347
P
Sbjct: 292 LP 293
>gi|295397442|ref|ZP_06807529.1| DNA mismatch repair protein MutS [Aerococcus viridans ATCC 11563]
gi|294974343|gb|EFG50083.1| DNA mismatch repair protein MutS [Aerococcus viridans ATCC 11563]
Length = 793
Score = 235 bits (599), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 218/796 (27%), Positives = 386/796 (48%), Gaps = 121/796 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHGSC 112
+ LE++K+ V+ RT +G+ L S + + +L+ +D+ E+ K
Sbjct: 6 FQTLEFEKIQQQVAKETRTEIGKIQALNLKPSAEAEEIEQALQSVDDVKRLFELDKRIPV 65
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
S L VK ++ + + L E AV +L+ S + + + +KE +
Sbjct: 66 S------QLINVKPFLKRLDIGADLNGKELAAVGRVLRASGEVS-NFFSKLKE---AKVE 115
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
M L + R L++ + + +DGS+ D+AS L R ++ E + +D +
Sbjct: 116 LMQLYSIADDFIDMRDLMRKMQNAIADDGSVYDNASSTLHGLRQGIKREEAGIRVKLDHI 175
Query: 233 IRNENNESLFLEVSSI---HGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLN 287
IR+ N++ +L + I + R I + + +F G++ SSSG IEP + + N
Sbjct: 176 IRS--NKASYLSEAIITIRNNRFVIPVKQEYRNAFGGVVHDQSSSGQTLYIEPQTVLDAN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+ + + + + L+ ++ EI + + LD++ A+ ++ G
Sbjct: 234 NHLRSLQVQEDEEIKRIFQELSAELAPYTSEIAENNQRLGDLDLIQAKFFFAREIGA--- 290
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+ P+ + + SER I L +A HPL
Sbjct: 291 -------------NRPILA--NESER---IDLKEARHPL--------------------- 311
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
L R+ + V DI + + ++VITGPNTGG
Sbjct: 312 -LDRKSV------------------------------VANDIHFSHEYNMIVITGPNTGG 340
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KTI LKTVGL +MA+SGL+I + ++V F+ +FADIGDEQS+ QSLSTFSGH+ I
Sbjct: 341 KTITLKTVGLLQLMAQSGLYITAKADSRVEIFNEIFADIGDEQSIEQSLSTFSGHMTNII 400
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
I+ + SLVL+DE+G+GT+P EG A+ +++L FA + + +ATTH+ ELKT Y
Sbjct: 401 RIVEAADEHSLVLIDELGSGTDPQEGAAIAIAVLNRFAFLNARV-MATTHYPELKTYAYE 459
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
+ NA MEF+E+ L+PTYK+L GVPGRS+A +I++RLGLP +V+ AR S +
Sbjct: 460 HPGAINASMEFNEITLEPTYKLLIGVPGRSNAFDISQRLGLPVEMVEEARSYIQEDSQNL 519
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
NE+++++E + ++ + EA L + NL +L + + ++ Q +
Sbjct: 520 NEMLLDLEAQRHEYEDLSAEAAKDLADAENLLNDLKKAQARL--EADKQTY--------- 568
Query: 708 AAIARSLVHKSAQQLCP-SASQARSLVHK-RAQQLRPSASQSLHCTKVGKNQHVLTSNFQ 765
+ K A QL + ++A +++ + R Q+ ++ ++ Q L++ Q
Sbjct: 569 ----MNRARKEANQLVEDTKTKADAILAEIREWQINHPTIGNIKEHEMIDRQSALSNLTQ 624
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEI 825
+ ++K + +++ K++ K + VGD V+V ++G++GT+ VE +++
Sbjct: 625 EEQLEK--------NKILQKAKKNKERKAS--FEVGDEVNVLTYGQRGTL--VEKREKDW 672
Query: 826 VVQVGNMKWIMKFTDI 841
VVQ+G +K + D+
Sbjct: 673 VVQMGMLKMEVAEKDL 688
>gi|392949262|ref|ZP_10314848.1| Recombination inhibitory protein MutS2 [Lactobacillus pentosus
KCA1]
gi|392435518|gb|EIW13456.1| Recombination inhibitory protein MutS2 [Lactobacillus pentosus
KCA1]
Length = 788
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 235/803 (29%), Positives = 378/803 (47%), Gaps = 142/803 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE+ ++ ++ + ++ G++A L L + T D R LDETN
Sbjct: 6 LNTLEYQQVKQQLAPYLVSATGQQA-LNDLQPMT-TVADIQRALDETN------------ 51
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPN-EALAVVALLQFSETLQL-----SLRAAIKEDA 167
GV++ +K I V R + ++P+ + LA+ A L SE Q+ + RA + A
Sbjct: 52 ---DGVEVYRLKGGI-PVARLADIQPHMKRLAIGATLNGSELGQVARVLRTTRAITRFFA 107
Query: 168 DLY-------IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQM 220
DL IR L + +L + K + ++ DG I D ASP L RG ++
Sbjct: 108 DLLADAPENDIRH--LFDEVDELVTLPEVTKRLATAIEGDGHITDDASPELSHIRGSIRR 165
Query: 221 LERKLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSV 277
E ++ M R + + L + +I + R I A+ F G++ S+SG
Sbjct: 166 TETEIRNQMGHYTRGHDAKYLSDPIITIRNDRYVIPVKAENRGRFGGIVHDQSASGQTLF 225
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
IEP + + LND L+Q + + + E+ +L L+ + +EI + D +NA+A
Sbjct: 226 IEPQAVMALNDRLRQNQVAEKQEEQRILEELSNLIAPYQEEIIHNAAILGHFDFINAKAR 285
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
Y+ T P + S T+E +YL +A HPL
Sbjct: 286 YAHDMHATEPEV--------SPTNE--------------VYLRQARHPL----------- 312
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
+ P ++ V DI + +
Sbjct: 313 -------------------------------IDPRKV----------VANDISLGIDYQA 331
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
+VITGPNTGGKTI LKT+GL +MA+SGL I ++V + +FADIGDEQS+ Q+LS
Sbjct: 332 MVITGPNTGGKTITLKTLGLLQLMAQSGLFIPVEAGSRVGVYHEIFADIGDEQSIEQNLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H++ I + ++Q SLVL+DE+GAGT+P EG AL +++L+A + S +ATTH
Sbjct: 392 TFSSHMENIESFLAQIDEHSLVLVDELGAGTDPQEGAALAIAILDAIG-AKSTQVVATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK ++ NA MEFDE LKPTY++L G+PGRS+A++IA+RLG+P +V AR
Sbjct: 451 YPELKAYGFNRPDTINASMEFDEQTLKPTYRLLVGIPGRSNALDIAQRLGIPQSIVDQAR 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
L S ++N +I ++ + Q + + + S LH+ L E A Q+
Sbjct: 511 SLTDTDSQDLNAMIADLVTKRKQVEDAQVALKAQVADSEKLHRQLKS------EFNAYQQ 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
RK Q I DA A ++V + S ++A +++ ++ S + ++ ++ +
Sbjct: 565 -RKDQLIEDAKVQANTIVEE-------SKTKADAIISDLRKKQLASGTANVKENELIDAK 616
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L + QQ P + V++ R K + GD V V S+G++G +++
Sbjct: 617 GALNALEQQ--------PKLKKNRVLR------RAKAQHEFHEGDDVLVKSYGQRGVLMR 662
Query: 818 VEPSKEEIVVQVGNMKWIMKFTD 840
K VQ+G +K MK +D
Sbjct: 663 -RMGKHAWEVQLGILK--MKISD 682
>gi|427405780|ref|ZP_18895985.1| MutS2 family protein [Selenomonas sp. F0473]
gi|425708621|gb|EKU71660.1| MutS2 family protein [Selenomonas sp. F0473]
Length = 785
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 214/803 (26%), Positives = 366/803 (45%), Gaps = 147/803 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK--- 108
E+ +VLE++K+ ++SFA + G+E T + S + RL +ET A+ + +
Sbjct: 4 EAFKVLEYEKIKKRLASFAFSIRGKELCRTMIPSAE--FDTVTRLHEETAEAVRVLQIQT 61
Query: 109 ---HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKE 165
G C L + +++ S L E +++ +Q ++ R
Sbjct: 62 PPFGGICDL----------RHILQKATLGSVLEVEELREIMSTMQGMRNIKYFFR----- 106
Query: 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
DA+ + L + +++ + L + + +DE G+ +D AS L++ ++ + ++
Sbjct: 107 DAEFELPL--LKEQTIRIEILGMLERRLQNTIDEHGNFRDDASLELRRVTRELVSAQGRV 164
Query: 226 YQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPL 281
+ + ++ + + F E ++ R I + + F G++ S+SG +EPL
Sbjct: 165 KEKLSAILHDAAYQKCFQEPIITVRDERYVIPVKQEYRNQFPGVIHDQSASGATLFVEPL 224
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ V LN+ ++Q + + +L LT+++ D + + + LD + ARA + +
Sbjct: 225 ATVELNNTVRQMEIAREHEIQRILQQLTQEIASSSDILSENCTILAGLDFIFARAGLAHN 284
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
+P +F R + L +A HPLL
Sbjct: 285 MDAYAP-VF---------------------NRSRYVRLRRARHPLL-------------- 308
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
P E QV VPIDI + R VL+IT
Sbjct: 309 -----------------------------PKE-QV--------VPIDIELGRDFSVLLIT 330
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ +KT+G+ +MA+SG + ++ A++P + S++ADIGDEQS+ QSLSTFS
Sbjct: 331 GPNTGGKTVSMKTLGILALMAQSGCFLPTAPGAELPVYGSIYADIGDEQSIEQSLSTFSA 390
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H K I I+ ++ + LVLLDE+GAGT+P EG AL S++E + +ATTH+ L
Sbjct: 391 HTKNIVRILQKAGGEDLVLLDEVGAGTDPDEGAALARSIIEYLLHK-HISVVATTHYAAL 449
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
KT Y NA +EFD L+PTY++L G PG S+A +I+ RLGL +V A+Q
Sbjct: 450 KTYAYGRKGVMNASVEFDIATLRPTYRLLIGTPGASNAFSISRRLGLSQEIVARAQQYIN 509
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK---ILE---HCAS 695
++ E+E+ K ++ E +H N LR R + +LE H
Sbjct: 510 EDHVRFEIIVNELEQEKREY-----EKKH----------NELRVREQKFSVLEERLHIER 554
Query: 696 QRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGK 755
+F R L+HK+ ++ +AR + A++ + + V +
Sbjct: 555 DKFIHAH---------RDLLHKAREEANNIVREAR----RNAEETIKTLKEQFDDHGVKE 601
Query: 756 NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ V+ S +Q + TA SV I R E GD+V++ + ++GTV
Sbjct: 602 RRKVIQSVREQLKDAYIPQSMTAGISVGTKI-------RAEDIQRGDIVYIKNLAREGTV 654
Query: 816 IKVEPSKEEIVVQVGNMKWIMKF 838
+ V + E+ VQVG ++ I+K
Sbjct: 655 LSVHEN--ELTVQVGGLRTIVKI 675
>gi|357039259|ref|ZP_09101053.1| MutS2 protein [Desulfotomaculum gibsoniae DSM 7213]
gi|355358158|gb|EHG05926.1| MutS2 protein [Desulfotomaculum gibsoniae DSM 7213]
Length = 788
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 223/397 (56%), Gaps = 38/397 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI I + +LVITGPNTGGKT+ LKTVGL V+MA SGLH+ + + + FD VFA
Sbjct: 314 VPISIQLGEAFDMLVITGPNTGGKTVSLKTVGLLVLMAHSGLHVPAEDGTLIGMFDQVFA 373
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H I NI+ ++ ++SLVLLDE+GAGT+P EG+AL ++L+
Sbjct: 374 DIGDEQSIEQSLSTFSSHTINIVNILKKAGNKSLVLLDELGAGTDPTEGSALARAILDQL 433
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ G+ + +ATTH+GELK+ ++N+ ENA +EF+ L+PTY++L G PGRS+A IA
Sbjct: 434 RQQGAKV-VATTHYGELKSYAFANERVENASVEFNSQTLRPTYRLLIGRPGRSNAFEIAL 492
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+Q AR ++ +++ E+E + Q A + + + +
Sbjct: 493 RLGLNESVIQRARGFLTEEQVQVADLMRELENARVQ-------AEQEQAEAEKIRREAEQ 545
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKS---AQQLCPS--ASQARSLVHKRAQQ 739
R + +E R RK + I+ A A +R +V K+ A+QL A+ H R Q
Sbjct: 546 YREQYMELAEKIRQRKDEIITRAVADSREMVKKARLEAEQLVEELRAALKEQTTHNREQ- 604
Query: 740 LRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPN 799
S S + C K + Q + + Q + EHP A ++V
Sbjct: 605 ---SISNARQCLK--QLQLKIDAKAPQ---NAYEHPTEAVTNV----------------K 640
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIM 836
GD V + +G++G V++ +++ VQVG ++ +
Sbjct: 641 PGDEVFIPKYGQRGVVLEAPGQDDQVQVQVGMIRMTI 677
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 130/305 (42%), Gaps = 24/305 (7%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS- 111
+L+ LE+D++ ++ FA ++ GRE + N+ DE A+E G
Sbjct: 5 NLKRLEFDRVKEKLAEFAVSTPGRELIGDLVPFSNR---------DEIVNALEEVTEGRE 55
Query: 112 -CSLDLTGV--DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
LD T + V+ R R + L P E V+ L T ++ E D
Sbjct: 56 LLRLDPTARLGGWNDVRQQARRCERGALLDPQELWHVLQTL----TACRQIKNFFSERQD 111
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
Y R L ++ M L + L K I + G + D AS L R ++ ++++
Sbjct: 112 SYTR---LNEIAMGLGSFKDLEKMIASAIAPGGEVLDRASERLFNIRRRLASAQQRIKDR 168
Query: 229 MDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAV 284
++ +IR+ + + + V+ GR + + S G++ S+SG IEP+ V
Sbjct: 169 LNEIIRSTSYQKYLQDPIVTMREGRYVVPVKQEYRSQLPGIVHDQSASGATLFIEPMPVV 228
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
N+E++ A + +L L+ + +E+ L + +LD + A+A YS S
Sbjct: 229 EANNEVRGLMAEEKQEVTRILTELSAAVGRQAEELLYALENLARLDFIMAKARYSESLDA 288
Query: 345 TSPNI 349
+P I
Sbjct: 289 WAPCI 293
>gi|125973529|ref|YP_001037439.1| MutS2 family protein [Clostridium thermocellum ATCC 27405]
gi|281417732|ref|ZP_06248752.1| MutS2 family protein [Clostridium thermocellum JW20]
gi|229486373|sp|A3DE67.1|MUTS2_CLOTH RecName: Full=MutS2 protein
gi|125713754|gb|ABN52246.1| MutS2 family protein [Clostridium thermocellum ATCC 27405]
gi|281409134|gb|EFB39392.1| MutS2 family protein [Clostridium thermocellum JW20]
Length = 793
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 216/392 (55%), Gaps = 32/392 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID +I LV+TGPNTGGKT+ LKTVGL +M ++GLHI ++E K+ F V+A
Sbjct: 318 VPIDFWIGEDFNTLVVTGPNTGGKTVTLKTVGLFTLMTQAGLHIPANEGTKMSIFKKVYA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+K I I+ SLVL DE+GAGT+P EG AL MS+LE
Sbjct: 378 DIGDEQSIEQSLSTFSSHMKNIVGILKDVDEDSLVLFDELGAGTDPTEGAALAMSILEYL 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
GS T+ATTH+ +LK + F ENAC EF+ L+PTY++L GVPG+S+A I++
Sbjct: 438 RNKGS-TTVATTHYSQLKAYAVTTKFVENACCEFNVETLRPTYRLLIGVPGKSNAFAISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A++ + ++++ +E+ Q +A + + + L K L
Sbjct: 497 RLGLFDDIIEKAKEFLTQDDIKFEDMLMSIEKNLNQSENEKMKAESYRLEAEKLKKELEE 556
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+RK+ E+ R R +Q +A A AR ++ ++ ++ S+ R L
Sbjct: 557 QKRKLAEN----RERLIQ---EARAEARKILLEARKEAEEIISKMRRL------------ 597
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPR---VKRTELPNVG 801
Q +H + K L ++ VD +E ++ +P+ VK E G
Sbjct: 598 EQEVHNAQRQKEAEELRLKLKR-KVDSIEETL--------ELPLAPKNALVKPPENLKPG 648
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
D V + + +KGTVI E+VVQ G MK
Sbjct: 649 DSVLIVNLDQKGTVITPPDKDGEVVVQAGIMK 680
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 146/303 (48%), Gaps = 19/303 (6%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHG 110
++L++LE++K+ + S A +SLG+E L + + R ET+ A+ + + G
Sbjct: 4 KTLKILEFNKIIDKLVSLATSSLGKE--LAEKLVPDTDLNRVERAQKETSDAVAFIARRG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQ-LSLRAAIKEDADL 169
+ + + ++ +++ V + L P E L +L+ L+ + IK D D
Sbjct: 62 TPPMG----GIHDIRDSLKRVEIGAILNPGELLKTADVLRAVRNLKSYASNDRIKTDEDN 117
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSI-MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
+ +++I L N+ + I M ++ ED I D+ASP L R Q++ + +
Sbjct: 118 IV-----SELIGCLESNKRIEDRIYMSILSED-EIADNASPTLANIRRQIRNAQESIKDK 171
Query: 229 MDMLIRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLL-SSSSGIGSVIEPLSAV 284
++ +IR+ + E + ++ G R I + + GL+ SS+SG IEP++ V
Sbjct: 172 LNDIIRSSRYQKYIQEPIVTLRGDRYVIPVKQEYRTEIPGLIHDSSASGATIFIEPMAVV 231
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
N+ +++ + E +L LT +++ +D ++ ++ + +LD + A+A SL +
Sbjct: 232 EANNHIRELKIKEQAEIEKILGELTGEIRGIVDSLKSNVSILGRLDFIFAKARLSLDYNC 291
Query: 345 TSP 347
P
Sbjct: 292 VCP 294
>gi|456369565|gb|EMF48465.1| Recombination inhibitory protein [Streptococcus parauberis
KRS-02109]
Length = 778
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 156/402 (38%), Positives = 233/402 (57%), Gaps = 47/402 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L PVP D+ ++ V+VITGPNTGGKTI LKT+GLA +M +SGL IL+ +K+ F+
Sbjct: 307 LQKPVPNDLHFSKDLTVIVITGPNTGGKTIMLKTLGLAQLMGQSGLPILADYGSKIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I +II Q+T+ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 GIFADIGDEQSIEQSLSTFSSHMTHIVSIIDQATADSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + T+ATTH+ ELK ++F ENA MEFD L+PTY+ + GVPGRS+A
Sbjct: 427 LEEL-RLKEIKTMATTHYPELKAYGIESEFVENASMEFDSNSLQPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSR-NLH 679
IA RLGL +V +A Q + +++N +I E+ ++Q LE H + + NL
Sbjct: 486 EIARRLGLASHIVTDA-QNFTDTDSDVNRII---EKLESQTLESRKRLEHIKEVEQDNLK 541
Query: 680 KNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA-SQARSLVHK--R 736
N R +K+ + +R ++++K++ K AQ++ A +++ S++ K
Sbjct: 542 FN--RAVKKLYNEFSHERDKEMEKVT-----------KEAQEIVDLALAESESILAKLHD 588
Query: 737 AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE 796
QL+P H K Q L QT + K + V+K + K+
Sbjct: 589 KSQLKP------HEVIEAKTQ--LKKLVPQTDLSK--------NKVLK------QAKKLR 626
Query: 797 LPNVGDLVHVSSFGKKGTVI-KVEPSKEEIVVQVGNMKWIMK 837
VGD + VS++G++GT+I +++ K E QVG +K +K
Sbjct: 627 AARVGDDIIVSAYGQRGTLINQLKDQKWE--AQVGLIKMTLK 666
>gi|90399000|emb|CAJ86270.1| H0901F07.7 [Oryza sativa Indica Group]
Length = 889
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 194/613 (31%), Positives = 303/613 (49%), Gaps = 61/613 (9%)
Query: 35 STVAVSDSDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSL 94
S VA + K+ RV E+ LEW +C ++ F T+ GR A + ++ ++S
Sbjct: 54 SPVAAETPEAKQMRVETEA--ALEWGGVCARLAGFPSTAAGRAACGEGRVPVGRSREESE 111
Query: 95 RLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSET 154
RLL++T AA + LD GV+ V SAI A L E V ++ +
Sbjct: 112 RLLEQTAAAALLPA----PLDFGGVED--VSSAIAAAAGARLLAVREICGVGRSIRAARR 165
Query: 155 LQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIK-DSASPAL-- 211
+ L+ +E D + PL ++ L++ I +D S+ D AS L
Sbjct: 166 VFDQLKTLSEETPDGR-SYTPLLDIMQDCDFLTELVQRIEFCLDYTLSVVLDRASDKLAT 224
Query: 212 --KQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQ--LSFKGLL 267
K+ R + MLE L + + +S V+ R+C+ A L G++
Sbjct: 225 IRKERRKNIDMLESLLRDTSTKIFQGGGIDSPV--VTKRRSRMCVGVKASHKHLVPGGIV 282
Query: 268 LSSS-SGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLD-EIEKMLNG 325
LSSS SG +EP A+ LN+ ++ + +AEE +L L D + +I ++
Sbjct: 283 LSSSGSGATYFMEPRDAIRLNN-MEVKLSGDERAEELAILGLLTSSIADSEMKIRHLMGK 341
Query: 326 IIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHP 385
I++LD+ AR +Y+L P F +D L + E ++++ HP
Sbjct: 342 ILELDLACARGSYALWINAVRP-AFTDRDSDTQL----------NPNSECSVFIEGIQHP 390
Query: 386 LLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPV 445
LLL+Q +++ T + ++ L P+
Sbjct: 391 LLLEQSLSMVKES----------------------------TGVGKGQLSDEHLVSPMPI 422
Query: 446 PIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFAD 505
P+D+ + TR++VI+GPNTGGKT +KT+GLA +M+K+G+ + ++PWFD V AD
Sbjct: 423 PLDMQVRNDTRIIVISGPNTGGKTATMKTLGLASLMSKAGMFFPAKGTPRLPWFDQVLAD 482
Query: 506 IGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565
IGD QSL SLSTFSGH+ ++ I+ + SLVL+DEIG+GT+P +G AL S+L+ A
Sbjct: 483 IGDHQSLEHSLSTFSGHISRLRKIVQVVSKDSLVLIDEIGSGTDPSDGVALSTSILKYLA 542
Query: 566 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAER 625
S L I TTH+ +L LK +D FENA MEF L+PTY+ILWG G S+A++IA+
Sbjct: 543 -SRLNLAIVTTHYADLSRLKAVDDRFENAAMEFCLETLQPTYQILWGSTGNSNALSIAKS 601
Query: 626 LGLPGIVVQNARQ 638
+G V+ A++
Sbjct: 602 IGFDQKVLARAQE 614
>gi|256003347|ref|ZP_05428338.1| MutS2 family protein [Clostridium thermocellum DSM 2360]
gi|385778551|ref|YP_005687716.1| MutS2 family protein [Clostridium thermocellum DSM 1313]
gi|419723621|ref|ZP_14250736.1| MutS2 protein [Clostridium thermocellum AD2]
gi|419724554|ref|ZP_14251616.1| MutS2 protein [Clostridium thermocellum YS]
gi|255992637|gb|EEU02728.1| MutS2 family protein [Clostridium thermocellum DSM 2360]
gi|316940231|gb|ADU74265.1| MutS2 family protein [Clostridium thermocellum DSM 1313]
gi|380772101|gb|EIC05959.1| MutS2 protein [Clostridium thermocellum YS]
gi|380780303|gb|EIC09986.1| MutS2 protein [Clostridium thermocellum AD2]
Length = 793
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 216/392 (55%), Gaps = 32/392 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID +I LV+TGPNTGGKT+ LKTVGL +M ++GLHI ++E K+ F V+A
Sbjct: 318 VPIDFWIGEDFNTLVVTGPNTGGKTVTLKTVGLFTLMTQAGLHIPANEGTKMSIFKKVYA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+K I I+ SLVL DE+GAGT+P EG AL MS+LE
Sbjct: 378 DIGDEQSIEQSLSTFSSHMKNIVGILKDVDEDSLVLFDELGAGTDPTEGAALAMSILEYL 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
GS T+ATTH+ +LK + F ENAC EF+ L+PTY++L GVPG+S+A I++
Sbjct: 438 RNKGS-TTVATTHYSQLKAYAVTTKFVENACCEFNVETLRPTYRLLIGVPGKSNAFAISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A++ + ++++ +E+ Q +A + + + L K L
Sbjct: 497 RLGLFDDIIEKAKEFLTQDDIKFEDMLMSIEKNLNQSENEKMKAESYRLEAEKLKKELEE 556
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+RK+ E+ R R +Q +A A AR ++ ++ ++ S+ R L
Sbjct: 557 QKRKLAEN----RERLIQ---EARAEARKILLEARKEAEEIISKMRRL------------ 597
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPR---VKRTELPNVG 801
Q +H + K L ++ VD +E ++ +P+ VK E G
Sbjct: 598 EQEVHNAQRQKEAEELRLKLKR-KVDSIEETL--------ELPLAPKNALVKPPENLKPG 648
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
D V + + +KGT+I E+VVQ G MK
Sbjct: 649 DSVLIVNLDQKGTIITPPDKDGEVVVQAGIMK 680
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 146/303 (48%), Gaps = 19/303 (6%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHG 110
++L++LE++K+ + S A +SLG+E L + + R ET+ A+ + + G
Sbjct: 4 KTLKILEFNKIIDKLVSLATSSLGKE--LAEKLVPDTDLNRVERAQKETSDAVAFIARRG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQ-LSLRAAIKEDADL 169
+ + + ++ +++ V + L P E L +L+ L+ + IK D D
Sbjct: 62 TPPMG----GIHDIRDSLKRVEIGAILNPGELLKTADVLRAVRNLKSYASNDRIKTDEDN 117
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSI-MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
+ +++I L N+ + I M ++ ED I D+ASP L R Q++ + +
Sbjct: 118 IV-----SELIGCLESNKRIEDRIYMSILSED-EIADNASPTLANIRRQIRNAQESIKDK 171
Query: 229 MDMLIRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLL-SSSSGIGSVIEPLSAV 284
++ +IR+ + E + ++ G R I + + GL+ SS+SG IEP++ V
Sbjct: 172 LNDIIRSSRYQKYIQEPIVTLRGDRYVIPVKQEYRTEIPGLIHDSSASGATIFIEPMAVV 231
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
N+ +++ + E +L LT +++ +D ++ ++ + +LD + A+A SL +
Sbjct: 232 EANNHIRELKIKEQAEIEKILGELTGEIRGIVDSLKSNVSILGRLDFIFAKARLSLDYNC 291
Query: 345 TSP 347
P
Sbjct: 292 VCP 294
>gi|381183546|ref|ZP_09892273.1| recombination and DNA strand exchange inhibitor protein
[Listeriaceae bacterium TTU M1-001]
gi|380316562|gb|EIA19954.1| recombination and DNA strand exchange inhibitor protein
[Listeriaceae bacterium TTU M1-001]
Length = 784
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 227/796 (28%), Positives = 370/796 (46%), Gaps = 131/796 (16%)
Query: 56 VLEWDKLCHSVSSFARTSLGREAT-----LTQLWSINQTYQDSLRLLDETNAAIEMQKHG 110
VLE+DK+ + FA +SLG EA T SI + ++ E A I ++ G
Sbjct: 8 VLEFDKIKKLLEPFAVSSLGEEAIRSLEPATSFDSIQKMQSET-----EEGAKI-IRLKG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
S + TG LS V ++ + L E + + L+ S + + + + ++
Sbjct: 62 SAPI--TG--LSDVAPHLKRLEIGGDLNGLEIYQIGSNLRVSRVM----KNFMDDLEEIG 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+ L ++ ++ V + L + I VDE G + D+AS L+ R + E ++ + ++
Sbjct: 114 VELPLLFELTKEILVLKDLEEEINLTVDEAGYMLDTASETLRSVRQTLARTEGRVREKLE 173
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
L+R+ N ++ + ++ + R I + S G ++ S+SG +EP S V L
Sbjct: 174 SLLRDRNAATMLSDAIITIRNDRYVIPVKQEYRSHYGGVIHDQSASGQTLFVEPQSVVDL 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+E + +A + E +L ++ K+ + EI + + D + A+A + S +
Sbjct: 234 NNERRALQAKENQEIERILAEMSAKLAEFIQEIHHNTYILGRFDFILAKARFGKSQKAIT 293
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P+ L +E VT L A HPL
Sbjct: 294 PH----------LNNEGVTK------------LYAARHPL-------------------- 311
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
L P + V DI + +VITGPNTG
Sbjct: 312 ----------------------LDPENV----------VANDILLGDGYSTIVITGPNTG 339
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+GL MM ++GL I + E + V ++ +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 340 GKTITLKTLGLLTMMTQAGLQIPAQEESLVAIYEDIFADIGDEQSIEQSLSTFSSHMTNI 399
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
+I+ + SLVL DE+GAGT+P EG AL +S+L+ A+ G+ + +ATTH+ ELK Y
Sbjct: 400 VSILEKLNQNSLVLFDELGAGTDPQEGAALAISILDEVAKRGASV-VATTHYPELKAYGY 458
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ F NA +EF+ L PTYK+L G+PGRS+A I+ RLGL V+ AR L SA+
Sbjct: 459 NRVFATNASVEFNVETLSPTYKLLIGIPGRSNAFEISRRLGLNEGVIDEARALVDTESAD 518
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+NE+I +E + EA L+++ K LLR +K + Q+ + +++ ++
Sbjct: 519 LNEMISSLEEKRNLAEAEYKEASE---LAKDADK-LLRDLQKEIRTYYEQKDKLLERANE 574
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHK-RAQQLRPSASQSLHCTKVGKNQHVLTSNFQ 765
K+++ + + +A +++ + R QLR ++ G +H L
Sbjct: 575 ----------KASEVVTAAEEEADTIIRELRELQLRGAS---------GVKEHEL----- 610
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEI 825
+D A A ++ P K GD V V S G+KG ++ + S E
Sbjct: 611 ---IDAKSRLAGAKPKTIQKKVVHPVKKVAHKFQEGDGVRVLSLGQKGVLLD-KVSGSEW 666
Query: 826 VVQVGNMKWIMKFTDI 841
VQ+G +K +K TD+
Sbjct: 667 NVQIGIIKMKIKETDL 682
>gi|296133368|ref|YP_003640615.1| MutS2 family protein [Thermincola potens JR]
gi|296031946|gb|ADG82714.1| MutS2 family protein [Thermincola potens JR]
Length = 782
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 174/282 (61%), Gaps = 5/282 (1%)
Query: 442 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS 501
H VPIDI++ R VLVITGPNTGGKT+ LKTVGL MA++GLHI ++VP F
Sbjct: 307 GHVVPIDIYLGRDFHVLVITGPNTGGKTVSLKTVGLTAAMAQAGLHIPCEPGSQVPVFHD 366
Query: 502 VFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 561
+F DIGDEQS+ QSLSTFSGHLK I +I+++ +LVLLDE+GAGT+P+EG AL M++L
Sbjct: 367 IFVDIGDEQSIEQSLSTFSGHLKNIIHILAKVNESALVLLDELGAGTDPVEGAALAMAIL 426
Query: 562 EAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAIN 621
E + + T+ATTH+ ELK + ENA +EFD L+PTYK+L G PGRSSA
Sbjct: 427 EYLYQKKA-RTVATTHYSELKVFAFERQGVENASVEFDSKTLRPTYKLLIGQPGRSSAFE 485
Query: 622 IAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKN 681
IA RLGLP +V AR + ++ +++ E+E + + E E R L R L +
Sbjct: 486 IALRLGLPEALVTRARSFLTSEEIQVADLVEELETNRRKAEE---ERRKAERLRRELDE- 541
Query: 682 LLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ R LE ++R V+K + AA K A +L
Sbjct: 542 MRRDYAAKLEALENRRKELVEKAREEAASIVRQARKEADELV 583
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 126/261 (48%), Gaps = 19/261 (7%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+ K+ ++ A SLGRE S + Y + LR +ET A E+ +
Sbjct: 2 LQRLEFHKVIELLTECATFSLGREYCAELQPSTD--YAEVLRRQEETAEAAEIYRK-EPD 58
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ L G + + IR+ L P E L V L + L+ +D ++
Sbjct: 59 VPLGG--MRDTRGIIRKANIGGILEPAELLDVAGNLVAARRLKRFF-------SDRSHQY 109
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
+ ++ LF+N+ L + I Q +D G++ D ASP L++ R +++ E + M+ +I
Sbjct: 110 PIMGDLVKNLFINKELEEKISQAIDPSGAVADEASPELRRIRHRIRETEINIKSKMEGII 169
Query: 234 RNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
R++ + F E + ++ G R + + + F G++ S+SG IEP++AV LN+E
Sbjct: 170 RSQEYQKFFQEPIITVRGDRYVVPVKQEYRGQFPGIIHDQSASGATLFIEPVAAVELNNE 229
Query: 290 LQQARASVTKAEEDVLLALTE 310
L R + E +VL LT+
Sbjct: 230 L---RKLYSDEEREVLRILTQ 247
>gi|365903650|ref|ZP_09441473.1| MutS family ATPase [Lactobacillus malefermentans KCTC 3548]
Length = 785
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 191/651 (29%), Positives = 311/651 (47%), Gaps = 130/651 (19%)
Query: 197 VDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE---VSSIHGRLC 253
++EDG I D+ASP L Q R Q+ E + M+ + NES +L V+ R
Sbjct: 140 IEEDGRILDTASPKLAQIRHQIARTESTIRSRMENYTKG--NESKYLSEGIVTIRDDRFV 197
Query: 254 IRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEK 311
I A+ + F G++ SS+G IEP + V N++L+Q + + + ++ +L L+E
Sbjct: 198 IPVKAEYKQHFGGIVHDQSSTGQTLFIEPGAVVEYNNQLRQHQLAEKQEQQLILAELSEL 257
Query: 312 MQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSS 371
++ EIE + + LD +NA+A Y+ K+ EP+ S
Sbjct: 258 LKPYQTEIENNAHILGHLDFINAKARYA----------------KQQKATEPIISS---- 297
Query: 372 EREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSP 431
+ + L A HPL+ P
Sbjct: 298 --QNVVKLRAARHPLI------------------------------------------DP 313
Query: 432 SEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS 491
++ + LEL D + + +++TGPNTGGKTI LKT+GL +M +SGL I ++
Sbjct: 314 KKVVANDLELG-----DTY-----KAIIVTGPNTGGKTITLKTLGLVQLMGQSGLFIPAN 363
Query: 492 EYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPL 551
E +++ FD +FADIGDEQS+ Q+LSTFS H+ I +I++ + +SL+LLDE+GAGT+P
Sbjct: 364 ENSEIAIFDDIFADIGDEQSIEQNLSTFSSHMDNIVSILADADEKSLILLDEVGAGTDPQ 423
Query: 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILW 611
EG +L M++L+ GS + +ATTH+ ELK Y+ NA MEFD LKPTY +L
Sbjct: 424 EGASLAMAILDDIGSIGSAV-VATTHYPELKAFGYNRSDTINASMEFDTKTLKPTYHLLI 482
Query: 612 GVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHF 671
G+PGRS+A IA RLG+ ++ AR+L + +IN +I ++ K + + +
Sbjct: 483 GIPGRSNAFEIAARLGIKESIIAEARELTDQDNQDINNMIADLTAQKKAADDAAAQLKVE 542
Query: 672 LMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARS 731
L + LH L + + Q+ R ++ D+A Q + + +QA
Sbjct: 543 LAEASQLHDEL----KVKYDKYEKQKDRLIEDAKDSA----------NQIVRDTRNQANE 588
Query: 732 LVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPR 791
++ + LH + NQ V E+ ++ + ++Q+P+
Sbjct: 589 II------------KDLHQKQQLSNQAV------------KENELISAKGAINALQQNPQ 624
Query: 792 VKRTELP---------NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
+K+ + GD V V S+G+ GT++ + S E VQ+G +K
Sbjct: 625 LKQNRILRREKKRHDFKKGDEVFVKSYGQMGTLMD-KLSDHEWEVQLGILK 674
>gi|312622156|ref|YP_004023769.1| muts2 family protein [Caldicellulosiruptor kronotskyensis 2002]
gi|312202623|gb|ADQ45950.1| MutS2 family protein [Caldicellulosiruptor kronotskyensis 2002]
Length = 787
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 221/795 (27%), Positives = 370/795 (46%), Gaps = 123/795 (15%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHGS 111
+L+ LE+DK+ + + A+++ +E + S N ++ L +DE+ + K+G+
Sbjct: 5 TLKALEYDKIVEILKNMAKSTPAKEYFENLIPSTNVADIENELNKVDESYRYV--LKYGN 62
Query: 112 C-SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
+L+ + SL KS + + L P E L + +L+ S +R + D
Sbjct: 63 PPTLEFENILPSLKKSKL-----GATLNPQEILQIGKVLKLS----YEMRTYLSYTQD-- 111
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
F L M +L + +I I Q I D+AS LK+ R +++ LE K+ ++
Sbjct: 112 --FSFLESMKKRLVNLKEVISRIDQTFLTPDEILDTASSKLKEIRDKIRKLENKIRDELN 169
Query: 231 MLIRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+IR+ + E + +I G +L + A+ + KG++ S++G +EP V +
Sbjct: 170 SMIRDPKIQRFLQEPIITIRGEKLLLPVKAEFRNEVKGIIHDQSATGATLFVEPFVCVEI 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
+++++ + + E +L ++ + +EIE +++LD+V +A ++ +
Sbjct: 230 SNQIRILKNKEKEEIERILQEISSLIASYCEEIETSFYALVELDIVFTKAIWAKEMNASK 289
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P I I L KA HPL+
Sbjct: 290 PII----------------------NASGIINLKKARHPLI------------------- 308
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
+KD +V +++ D+ I ITGPNTG
Sbjct: 309 -----------------QKD--------KVVPIDIHLGKDFDVLI--------ITGPNTG 335
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKTVGL ++ +SG+ I + E +++ F +FADIGD+QS+ QSLSTFS H+K I
Sbjct: 336 GKTVTLKTVGLFCLLCQSGIFIPADEGSELCIFQKIFADIGDDQSIVQSLSTFSAHMKNI 395
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I + ++LVLLDEIGAGT+P EG AL ++L+ +E GS + IATTH+GELK
Sbjct: 396 IEITKNADDKTLVLLDEIGAGTDPEEGAALAKAILKYLSEKGSKV-IATTHYGELKIFAQ 454
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ FENA EFD LKPTY++L G+PGRS+A+ I+ LGL +V+ AR + +
Sbjct: 455 QENRFENASCEFDVKTLKPTYRLLIGIPGRSNALVISSNLGLDKGIVEMARGYLSQKTID 514
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++ +I EME+ K + E++ A+ ++ L +++ +R RK
Sbjct: 515 LDRIINEMEQKKKEAEENLELAQKLKHEAQALKAAYEEEKKRF--ETERERIRK-----K 567
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A A+ +V +S ++ R L A+ L+ K + + ++ S QQ
Sbjct: 568 AINEAKEIVERSQYEIENLFKDLRKL----AENLKEKEVLKELEEKKREYERLIQSISQQ 623
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
A S K I Q+ R +G V+V SF +G V + SK +
Sbjct: 624 -------EKQEAESKTKKTI-QNLR--------LGQKVYVRSFDAEGFVESLPDSKGNLT 667
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G MK + +DI
Sbjct: 668 VQIGIMKINVNLSDI 682
>gi|397691555|ref|YP_006528809.1| MutS2 family protein [Melioribacter roseus P3M]
gi|395813047|gb|AFN75796.1| MutS2 family protein [Melioribacter roseus P3M]
Length = 782
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 186/672 (27%), Positives = 307/672 (45%), Gaps = 111/672 (16%)
Query: 175 PLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIR 234
PL ++ L V++ K+I ++ DE+ +KD ASPALK R ++ E L + ++ L++
Sbjct: 117 PLDELRNALTVDKVFEKNIEKIFDENWDVKDDASPALKSIRSDIREKELSLQKTVNRLLK 176
Query: 235 NENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDEL 290
+ E L E + GR+ + A+ + KG + S SS+G IEP + LN+++
Sbjct: 177 KLSEEYLVQEEYFTQRDGRIVLPVKAEHKRHVKGFIHSESSTGQTVYIEPAEILELNNDI 236
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIF 350
+ + + E +LL +T ++ E+ N I LD + ARA Y+L G+ P
Sbjct: 237 LSLKFAEKREIEKILLVITRQIAAKSQELLDAYNIITALDTLFARAKYALEIIGSIPTF- 295
Query: 351 LPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELR 410
+ I L A HP+LL++
Sbjct: 296 ---------------------DNGKPIELIDARHPILLKK-------------------- 314
Query: 411 RRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTI 470
L VP+++ I + ++LV+TGPN GGKT+
Sbjct: 315 ----------------------------LGFEATVPLNLKITDQ-KILVLTGPNAGGKTV 345
Query: 471 CLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 530
LKT+GL V+MA+SG+ I + + F+ V DIGD QS+ LSTFS HL I +I+
Sbjct: 346 ALKTIGLLVLMAQSGIPIPCHPDSNLHIFEKVLVDIGDYQSIEDDLSTFSSHLTNIKSIL 405
Query: 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590
+ +LVLLDE+G GT+P+EG A+ +L + + G+L+ +ATTHHG LK + D
Sbjct: 406 ENANESTLVLLDEVGTGTDPVEGAAIATGILISLRDKGALV-VATTHHGSLKLIANQLDK 464
Query: 591 FENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEV 650
F+N MEFD +LKPTY+ G+PG S A IA R+G + +++ + +I E
Sbjct: 465 FQNCSMEFDSEELKPTYRFNQGMPGSSYAFEIATRIGFDEKFIDLSKRYIDSDKTKIEEF 524
Query: 651 IIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAI 710
+I++E+ +H NL LR L+ A+ K+ K+
Sbjct: 525 LIDIEKKSHDLRNQIH----------NLELENLR-----LKSLANLYQDKINKLEKQKKE 569
Query: 711 ARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVD 770
H+ A L S V+++ + + QS +V K + ++ T+
Sbjct: 570 ILEEAHQKANILL-------SDVNRKIENAIKNIRQSRADKEVIKKEKSEIETVKKKTLS 622
Query: 771 KVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVG 830
+E T SS K NVGD V + G + +++ K++ ++ +G
Sbjct: 623 YLEKSRTEESSSYK-------------LNVGDYVSIKGTTSVGVLDEIDEDKDKALITIG 669
Query: 831 NMKWIMKFTDIV 842
++K K++ +V
Sbjct: 670 SLKIKAKYSSLV 681
>gi|402838646|ref|ZP_10887149.1| MutS2 family protein [Eubacteriaceae bacterium OBRC8]
gi|402272206|gb|EJU21427.1| MutS2 family protein [Eubacteriaceae bacterium OBRC8]
Length = 785
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 180/645 (27%), Positives = 311/645 (48%), Gaps = 107/645 (16%)
Query: 203 IKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD- 259
I D AS L++ R Q+ ++ + ++ ++ + + + V+ + R + ++
Sbjct: 142 ISDDASADLRRIRRQINSEKQNIKNKLNEIVSSSKYSKILQDSVVTMRNERFVVPVKSEN 201
Query: 260 QLSFKGLLL-SSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDE 318
+ F G++ +SSSG IEP++ V +N+ L + K E +L LT + ++
Sbjct: 202 RADFPGIVHDTSSSGATMFIEPMAIVNMNNRLSTLKQEEHKEIERILAYLTSLVGEYCED 261
Query: 319 IEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIY 378
I + + QLD + A+ S+ P I ++R++ I
Sbjct: 262 ISHNCDILEQLDFIMAKGKLSVEMNAIEPKI---------------------NDRKY-IK 299
Query: 379 LPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSA 438
L A HPL+ EKD +S +
Sbjct: 300 LINARHPLI------------------------------------EKDKVVSST------ 317
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
I + + L+ITGPNTGGKT+ LKT+GL +M ++GLHI + +
Sbjct: 318 ----------IILGGEYSTLIITGPNTGGKTVTLKTLGLCSLMFQAGLHIPCDLESTICI 367
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
FD+VFADIGDEQS+ QSLSTFS H+ I I+ + SLVL DE+GAGT+P+EG L +
Sbjct: 368 FDNVFADIGDEQSIQQSLSTFSAHMTNIVYIMDNVGNNSLVLFDELGAGTDPIEGAGLAV 427
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
S+LE +S ++LT+ATTH+ ELK + + NA +EFD L PTYK+L GVPG+S+
Sbjct: 428 SILETL-KSKNILTVATTHYSELKNYALTQENVTNASVEFDINTLSPTYKLLIGVPGKSN 486
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A I+++LGL ++ +A++ S ++ +VI ++E+ +T + + E + L
Sbjct: 487 AFEISKKLGLSEEIINSAKEHIKTDSIQMEDVISKLEKIRTDYEKKQEELQKEL------ 540
Query: 679 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
+++ R K+ Q+ + + I DA AR L+ A ++ K
Sbjct: 541 -EDVKYIRLKLENKEQRQKEQNKKLIEDAKEKARKLIE--------DAKSEADIISKNLN 591
Query: 739 QLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP 798
+++ S+ + + + L +N + E A + ++ + K E
Sbjct: 592 KIKNSSDYK----NIDRQMNELKTNINKYK----EKYAKSKEELI-----AKSSKPLENI 638
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIVT 843
NVGD+V+V+SF K V+ V+ +K+E+++++G +K +K ++ T
Sbjct: 639 NVGDIVYVNSFAKNAKVLSVDDAKDEVLIELGAIKMTVKKENLST 683
>gi|222153669|ref|YP_002562846.1| DNA mismatch repair protein [Streptococcus uberis 0140J]
gi|254766604|sp|B9DVK7.1|MUTS2_STRU0 RecName: Full=MutS2 protein
gi|222114482|emb|CAR43343.1| putative DNA mismatch repair protein [Streptococcus uberis 0140J]
Length = 777
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 151/401 (37%), Positives = 232/401 (57%), Gaps = 45/401 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ A V+VITGPNTGGKTI LKT+GLA +M +SGL IL+ E +K+ FD
Sbjct: 307 LKNPVANDLHFADDLAVIVITGPNTGGKTIMLKTLGLAQLMGQSGLPILADEGSKIAVFD 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+++ADIGDEQS+ QSLSTFS H+ I +I+ +S S SLVL DE+GAGT+P EG +L M++
Sbjct: 367 AIYADIGDEQSIEQSLSTFSSHMTHIVDILEESNSNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + ++ T+ATTH+ ELK +D+ ENA MEFD LKPTY+ + GVPGRS+A
Sbjct: 427 LEQLRLT-NIKTMATTHYPELKAYGIESDYVENASMEFDSQSLKPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMER---FKTQFLEHVHEARHFLMLSRN 677
IA RLGL +V+ A Q+ S ++N +I E+ER + L+H+ E N
Sbjct: 486 EIARRLGLAETIVKEAEQMTDTDS-DVNRIIEELERQTLSSRRRLDHIREVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
+ N R +K+ + + ++++K S A L ++++ S +H++A
Sbjct: 540 IKFN--RAVKKLYNEFSLAKDKEIEKASQEAQAIVELALTESEEIL-------SKLHEKA 590
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL 797
+L+P H K++ ++ V + + K +++
Sbjct: 591 -ELKP------HEIIEAKSK-------LKSLVPQRDLSKNKVLKKAKKLRE--------- 627
Query: 798 PNVGDLVHVSSFGKKGTVI-KVEPSKEEIVVQVGNMKWIMK 837
P +GD + VS++G++GT+I +V+ +K E QVG +K +K
Sbjct: 628 PRIGDDIIVSAYGQRGTLIGQVKGNKWE--AQVGLIKMTLK 666
>gi|251795420|ref|YP_003010151.1| MutS2 family protein [Paenibacillus sp. JDR-2]
gi|247543046|gb|ACT00065.1| MutS2 family protein [Paenibacillus sp. JDR-2]
Length = 789
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 224/801 (27%), Positives = 371/801 (46%), Gaps = 137/801 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE+ K+ + + A TSLG+ + QL ++ +D +L T+ A + + +
Sbjct: 6 LSTLEFHKITNKLVHHAATSLGKSVS-GQLAPVSD-LEDVKHMLQTTDEAYKADRLKGNA 63
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
VD+S +++ R L P E L + A + + ++ + + ED + + F
Sbjct: 64 PFGGVVDIS---ASLHRARIGGTLNPAELLDIAATARGARRVKKHIDN-LHEDDPIPLLF 119
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
QM QL ++ L +I +D+ + DSASP L R +++ E ++ + ++ +I
Sbjct: 120 ----QMTEQLSEHKPLEDAIFDCIDDQAEVMDSASPELASIRRELRSGESRIREKLEQMI 175
Query: 234 RNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLNDE 289
R+ + + + + ++ + R I + S G ++ SG G+ IEP + V +N++
Sbjct: 176 RSSSVQKMLQDSIITLRNDRYVIPVKQEYRSHFGGIVHDQSGSGATLFIEPEAIVSMNNK 235
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L++ TKA E L EIEK+L + ARA + ++
Sbjct: 236 LRE-----TKAAE-------------LREIEKILQKL------TARAAEHVE------DL 265
Query: 350 FLPQDM---------KRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
QD+ K L HE + ++R + + + + HPL+
Sbjct: 266 LYNQDLLGKLDFAYAKARLAHEMKATLPRMNDRGF-LKIKRGRHPLI------------- 311
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
+P ++ VP+D+ + + +++
Sbjct: 312 -----------------------------APDKV----------VPLDVELGNQFTAIIV 332
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT+ LKTVGL +MA SGL + + E +++ FDS++ADIGDEQS+ QSLSTFS
Sbjct: 333 TGPNTGGKTVSLKTVGLLSLMAMSGLFVPADEGSQLCVFDSIYADIGDEQSIEQSLSTFS 392
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H+ I I+ TS+SLVLLDE+GAGT+P EG+AL +++LE + S + IATTH+ E
Sbjct: 393 SHMTNIIRILGSMTSKSLVLLDELGAGTDPAEGSALAIAILEHIHKLDSRI-IATTHYSE 451
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK Y+ NA MEFD L PTY++L GVPGRS+A IAERLGL ++ +AR
Sbjct: 452 LKAYAYNRKGVINASMEFDVATLSPTYRLLVGVPGRSNAFAIAERLGLSQAIIDHAR--- 508
Query: 641 GAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRK 700
EV E +R + + + E R LS +N + R+ +E +QR R
Sbjct: 509 -------GEVSEEDQRVEN-MIASLEEDR----LSAESERNTAESMRREME---AQRKRH 553
Query: 701 VQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVL 760
++ ++ K+ ++ + ++AR + LR A + K +H L
Sbjct: 554 EAELERFEEQRDKMLQKAQEEAHEAVAKARREADQIIADLRKLALEEGASVK----EHKL 609
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
++ E S K+ ++ GD V V S +KG V ++
Sbjct: 610 IEAKRRLEEAAPELATKKKRSAGGGAKKPAKI------GAGDEVMVYSLNQKGIVAEIGA 663
Query: 821 SKEEIVVQVGNMKWIMKFTDI 841
S + VQ+G MK + D+
Sbjct: 664 S--DATVQLGIMKMKVALDDL 682
>gi|329116617|ref|ZP_08245334.1| MutS2 family protein [Streptococcus parauberis NCFD 2020]
gi|326907022|gb|EGE53936.1| MutS2 family protein [Streptococcus parauberis NCFD 2020]
Length = 778
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 155/402 (38%), Positives = 233/402 (57%), Gaps = 47/402 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L PVP D+ ++ V+VITGPNTGGKTI LKT+GLA +M +SGL IL+ +K+ F+
Sbjct: 307 LQKPVPNDLHFSKDLTVIVITGPNTGGKTIMLKTLGLAQLMGQSGLPILADYGSKIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I +I+ Q+T+ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 GIFADIGDEQSIEQSLSTFSSHMTHIVSILDQATADSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + T+ATTH+ ELK ++F ENA MEFD L+PTY+ + GVPGRS+A
Sbjct: 427 LEEL-RLKEIKTMATTHYPELKAYGIESEFVENASMEFDSNSLQPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSR-NLH 679
IA RLGL +V +A Q + +++N +I E+ ++Q LE H + + NL
Sbjct: 486 EIARRLGLASHIVTDA-QNFTDTDSDVNRII---EKLESQTLESRKRLEHIKEVEQDNLK 541
Query: 680 KNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA-SQARSLVHK--R 736
N R +K+ + +R ++++K++ K AQ++ A +++ S++ K
Sbjct: 542 FN--RAVKKLYNEFSHERDKEMEKVT-----------KEAQEIVDLALAESESILAKLHD 588
Query: 737 AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE 796
QL+P H K Q L QT + K + V+K + K+
Sbjct: 589 KSQLKP------HEVIEAKTQ--LKKLVPQTDLSK--------NKVLK------QAKKLR 626
Query: 797 LPNVGDLVHVSSFGKKGTVI-KVEPSKEEIVVQVGNMKWIMK 837
VGD + VS++G++GT+I +++ K E QVG +K +K
Sbjct: 627 AARVGDDIIVSAYGQRGTLINQLKDQKWE--AQVGLIKMTLK 666
>gi|363890216|ref|ZP_09317557.1| hypothetical protein HMPREF9628_01999 [Eubacteriaceae bacterium
CM5]
gi|361965897|gb|EHL18859.1| hypothetical protein HMPREF9628_01999 [Eubacteriaceae bacterium
CM5]
Length = 785
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 179/639 (28%), Positives = 308/639 (48%), Gaps = 107/639 (16%)
Query: 203 IKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD- 259
I D AS L++ R Q+ ++ + ++ ++ + + + V+ + R + ++
Sbjct: 142 ISDDASADLRRIRRQINSEKQNIKNKLNEIVSSSKYSKILQDSVVTMRNERFVVPVKSEN 201
Query: 260 QLSFKGLLL-SSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDE 318
+ F G++ +SSSG IEP++ V +N+ L + K E +L LT + ++
Sbjct: 202 RADFPGIVHDTSSSGATMFIEPMAIVNMNNRLSTLKQEEHKEIERILAYLTSLVGEYCED 261
Query: 319 IEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIY 378
I + + QLD + A+ S+ P I ++R++ I
Sbjct: 262 ISHNCDILEQLDFIMAKGKLSVEMNAIEPKI---------------------NDRKY-IK 299
Query: 379 LPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSA 438
L A HPL+ EKD +S +
Sbjct: 300 LINARHPLI------------------------------------EKDKVVSST------ 317
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
I + + L+ITGPNTGGKT+ LKT+GL +M ++GLHI + +
Sbjct: 318 ----------IILGGEYSTLIITGPNTGGKTVTLKTLGLCSLMFQAGLHIPCDLESTICI 367
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
FD+VFADIGDEQS+ QSLSTFS H+ I I+ + SLVL DE+GAGT+P+EG L +
Sbjct: 368 FDNVFADIGDEQSIQQSLSTFSAHMTNIVYIMDNVGNNSLVLFDELGAGTDPIEGAGLAV 427
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
S+LE +S ++LT+ATTH+ ELK + + NA +EFD L PTYK+L GVPG+S+
Sbjct: 428 SILETL-KSKNILTVATTHYSELKNYALTQENVTNASVEFDINTLSPTYKLLIGVPGKSN 486
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A I+++LGL ++ +A++ S ++ +VI ++E+ +T + + E + L
Sbjct: 487 AFEISKKLGLSEEIINSAKEHIKTDSIQMEDVISKLEKIRTDYEKKQEELQKEL------ 540
Query: 679 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
+++ R K+ Q+ + + I DA AR L+ A ++ K
Sbjct: 541 -EDVKYIRLKLENKEQRQKEQNKKLIEDAKEKARKLIE--------DAKSEADIISKNLN 591
Query: 739 QLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP 798
+++ S+ + + + L +N + E A + ++ + K E
Sbjct: 592 KIKNSSDYK----NIDRQMNELKTNINKYK----EKYAKSKEELI-----AKSSKPLENI 638
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
NVGD+V+V+SF K V+ V+ +K+E+++++G +K +K
Sbjct: 639 NVGDIVYVNSFAKNAKVLSVDDAKDEVLIELGAIKMTVK 677
>gi|333904393|ref|YP_004478264.1| DNA mismatch repair protein [Streptococcus parauberis KCTC 11537]
gi|333119658|gb|AEF24592.1| DNA mismatch repair protein [Streptococcus parauberis KCTC 11537]
Length = 778
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 155/402 (38%), Positives = 233/402 (57%), Gaps = 47/402 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L PVP D+ ++ V+VITGPNTGGKTI LKT+GLA +M +SGL IL+ +K+ F+
Sbjct: 307 LQKPVPNDLHFSKDLTVIVITGPNTGGKTIMLKTLGLAQLMGQSGLPILADYGSKIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I +I+ Q+T+ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 GIFADIGDEQSIEQSLSTFSSHMTHIVSILDQATADSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + T+ATTH+ ELK ++F ENA MEFD L+PTY+ + GVPGRS+A
Sbjct: 427 LEEL-RLKEIKTMATTHYPELKAYGIESEFVENASMEFDSNSLQPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSR-NLH 679
IA RLGL +V +A Q + +++N +I E+ ++Q LE H + + NL
Sbjct: 486 EIARRLGLASHIVTDA-QNFTDTDSDVNRII---EKLESQTLESRKRLEHIKEVEQDNLK 541
Query: 680 KNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA-SQARSLVHK--R 736
N R +K+ + +R ++++K++ K AQ++ A +++ S++ K
Sbjct: 542 FN--RAVKKLYNEFSHERDKEMEKVT-----------KEAQEIVDLALAESESILAKLHD 588
Query: 737 AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE 796
QL+P H K Q L QT + K + V+K + K+
Sbjct: 589 KSQLKP------HEVIEAKTQ--LKKLVPQTDLSK--------NKVLK------QAKKLR 626
Query: 797 LPNVGDLVHVSSFGKKGTVI-KVEPSKEEIVVQVGNMKWIMK 837
VGD + VS++G++GT+I +++ K E QVG +K +K
Sbjct: 627 AARVGDDIIVSAYGQRGTLINQLKDQKWE--AQVGLIKMTLK 666
>gi|334882014|emb|CCB82961.1| MutS2 protein [Lactobacillus pentosus MP-10]
gi|339639215|emb|CCC18449.1| MutS2 protein [Lactobacillus pentosus IG1]
Length = 788
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 235/803 (29%), Positives = 377/803 (46%), Gaps = 142/803 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE+ ++ ++ + ++ G++A L L + T D R LDETN
Sbjct: 6 LNTLEYQQVKQQLAPYLVSATGQQA-LNDLQPMT-TVADIQRALDETN------------ 51
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPN-EALAVVALLQFSETLQL-----SLRAAIKEDA 167
GV++ +K I V R + ++P+ + LA+ A L SE Q+ + RA + A
Sbjct: 52 ---DGVEVYRLKGGI-PVARLADIQPHMKRLAIGATLNGSELGQVARVLRTTRAITRFFA 107
Query: 168 DLY-------IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQM 220
DL IR L + +L + K + ++ DG I D ASP L RG ++
Sbjct: 108 DLLADAPENDIRH--LFDEVDELVTLPEVTKRLATAIEGDGHITDDASPELNHIRGSIRR 165
Query: 221 LERKLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSV 277
E ++ M R + + L + +I + R I A+ F G++ S+SG
Sbjct: 166 TETEIRNQMGHYTRGHDAKYLSDPIITIRNDRYVIPVKAENRGRFGGIVHDQSASGQTLF 225
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
IEP + + LND L+Q + + + E+ +L L+ + +EI + D +NA+A
Sbjct: 226 IEPQAVMALNDRLRQNQVAEKQEEQRILEELSNLIAPYQEEIIHNAAILGHFDFINAKAR 285
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
Y+ T P +VS S +YL +A HPL
Sbjct: 286 YAHDMHATEP-------------------EVSPSNE---VYLRQARHPL----------- 312
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
+ P ++ V DI + +
Sbjct: 313 -------------------------------IDPRKV----------VANDISLGIDYQA 331
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
+VITGPNTGGKTI LKT+GL +MA+SGL I ++V + +FADIGDEQS+ Q+LS
Sbjct: 332 MVITGPNTGGKTITLKTLGLLQLMAQSGLFIPVEAGSRVGVYHEIFADIGDEQSIEQNLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H++ I + ++Q SLVL+DE+GAGT+P EG AL +++L+A + S +ATTH
Sbjct: 392 TFSSHMENIESFLAQIDEHSLVLVDELGAGTDPQEGAALAIAILDAIG-AKSTQVVATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK ++ NA MEFDE LKPTY++L G+PGRS+A++IA+RLG+P +V AR
Sbjct: 451 YPELKAYGFNRPDTINASMEFDEQTLKPTYRLLVGIPGRSNALDIAQRLGIPQSIVDQAR 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
L S ++N +I ++ + Q + + + S LH+ L E A Q+
Sbjct: 511 SLTDTDSQDLNAMIADLVTKRKQVEDAQVALKAQVADSEKLHRQLKS------EFNAYQQ 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
RK Q I DA A ++V + S ++A +++ ++ S + ++ ++ +
Sbjct: 565 -RKDQLIEDAKVQANTIVEE-------SKTKADAIISDLRKKQLASGTANVKENELIDAK 616
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L + QQ P + V++ R K + GD V V S+G++G +++
Sbjct: 617 GALNALEQQ--------PKLKKNRVLR------RAKAQHEFHEGDDVLVKSYGQRGVLMQ 662
Query: 818 VEPSKEEIVVQVGNMKWIMKFTD 840
K VQ+G +K MK +D
Sbjct: 663 -RMGKHAWEVQLGILK--MKISD 682
>gi|239636360|ref|ZP_04677362.1| MutS2 protein [Staphylococcus warneri L37603]
gi|239597715|gb|EEQ80210.1| MutS2 protein [Staphylococcus warneri L37603]
Length = 782
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 221/795 (27%), Positives = 369/795 (46%), Gaps = 122/795 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE+DK+ V++ A + LGRE + + +T + + DE + KH
Sbjct: 4 KTLDVLEFDKIKSFVANEAISDLGREKVAEMSPATDFETVEFQINETDEISQI--YNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G LS V I L E A+ L+Q + ++ED +
Sbjct: 62 LPSL--SG--LSKVAQYIHRSTIGGVLNVTELNAIKRLIQVQNQFKTFYNQLLEEDEE-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + QL + L K I D + D AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILDSQMAQLPILTDLFKDINDKCDAH-DLYDHASYELQSIRSKISSTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++++ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RVVKSQANQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R E +L LT ++ V+ D + + + LD + A+A Y+ + GT
Sbjct: 235 NNQISRLRNDEAVERERILAELTSQVAVESDALLLAESIMGHLDFLIAKARYARAIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P +E T+YLP A+ L N
Sbjct: 295 PTF----------------------HKERTVYLP----------------NAYHPLLDHN 316
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T + + +E + ++ITGPNTG
Sbjct: 317 T--------------------------VVANTIEFVDDI----------ETVIITGPNTG 340
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL ++MA+SG+ I + + +++ F++V+ DIGDEQS+ QSLSTFS H+K I
Sbjct: 341 GKTVTLKTLGLIIVMAQSGMLIPTLDGSQLSVFENVYCDIGDEQSIEQSLSTFSSHMKNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ ++ SL+L DE+GAGT+P EG AL MS+L+ G+L+ +ATTH+ ELK Y
Sbjct: 401 VEILKEADKNSLILFDELGAGTDPSEGAALAMSILDHVRNLGALV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVETLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
IN +I +E+ + E E + ++ H L + ++ Q + K + D
Sbjct: 520 INNMIESLEKNSKRVDEQRIELDRLVKEAQATHDELAK------QYQQYQNYEK--SLMD 571
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
A + A Q SA++ + K ++LR + +H L +Q
Sbjct: 572 EAK-------EKANQRVKSATKEADAILKELRELRDQKGADV-------KEHELIDKKKQ 617
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
D+ E K IKQ+ + ++ + GD V V S+G+K + +EE V
Sbjct: 618 LD-DQYE---------AKSIKQNVQKQKYDKIQAGDEVKVLSYGQK-GEVLELVGEEEAV 666
Query: 827 VQVGNMKWIMKFTDI 841
VQ+G +K + D+
Sbjct: 667 VQMGILKMKLPIEDL 681
>gi|300856601|ref|YP_003781585.1| DNA mismatch repair MutS-like protein [Clostridium ljungdahlii DSM
13528]
gi|300436716|gb|ADK16483.1| DNA mismatch repair MutS related protein [Clostridium ljungdahlii
DSM 13528]
Length = 786
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 143/413 (34%), Positives = 225/413 (54%), Gaps = 36/413 (8%)
Query: 436 VSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
V+ +E HP VP+D++I R LVITGPNTGGKT+ LKT+GL +MA SGL I
Sbjct: 299 VNIIEGRHPLINKKTVVPMDVYIGRNFSCLVITGPNTGGKTVTLKTIGLLHIMALSGLMI 358
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ E + V +F VFADIGDEQS+ Q+LSTFS H+ I NII +SLVL DE+GAGT
Sbjct: 359 PARENSTVGFFTEVFADIGDEQSIEQNLSTFSSHMTNIVNIIENFDEKSLVLFDELGAGT 418
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG AL +S+LE + G + +ATTH+ ELK N+ ENA +EFD L+PTY+
Sbjct: 419 DPTEGAALAVSILENLRKRGCTI-VATTHYSELKVYALKNEGVENASVEFDVETLRPTYR 477
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
++ GVPG+S+A I++RLGLP ++++AR+ + + + ++I ++ K++ EA
Sbjct: 478 LMIGVPGKSNAFEISKRLGLPEFIIEDARENIASDALQFEDLIQSLQEKKSKAETFAREA 537
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
+L++ ++ ++ K+Q I D A I + A+++ ++ +
Sbjct: 538 E------------ILKSEAAKIKEKYEEKASKLQNIRDKAIIG---AQREAKEIIRNSKE 582
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
+ K ++L S K+ +N+ L ++T +K+ +K +K+
Sbjct: 583 EADKILKDMRELERMGYTSSVRHKLEENRKKLKDRLEKTE-EKLYDNKNDVGEELKSVKE 641
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
G V + S +K V+ SK E+ VQ G MK +K ++
Sbjct: 642 ------------GQEVFIPSLNQKAVVLSKPDSKGEVQVQAGIMKISVKLKEL 682
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 145/307 (47%), Gaps = 26/307 (8%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
+SL+VLE+ K+ + +A T ++ + +L + Y+ L + A + G+
Sbjct: 4 KSLKVLEFYKVKERLKDYANTGAAKD-LIEKLSPYDNLYEVREHLQETREALKLLVTKGN 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED----- 166
+ GV V+ I+ + S L P + L + A+L+ + +Q + + E+
Sbjct: 63 PPFE--GV--YDVRQGIKMAGKGSTLMPGQILKIGAILRAARRIQKYITVSEDEEHFKII 118
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
D+ +PL + ++F+ ++ + I D AS L R ++ +
Sbjct: 119 EDICAGIVPLKNLEDEIFI----------AIESEDEISDKASSLLYNIRKSLKDKNASVR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSA 283
++ LIR+ ++ L + ++ G R + A+ + S GL+ SSSG IEP+
Sbjct: 169 DRVNSLIRS-YSDYLQDNLYTMRGDRYVLPVKAENKSSVPGLVHDQSSSGATLYIEPMGL 227
Query: 284 VPLNDELQQARASVTKAEEDVLLA-LTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
V LN+E+++ + KAE D +LA L++++ ++ +E+ + I +LD + A+A +
Sbjct: 228 VNLNNEIKELKLK-EKAEIDRILAELSQQIYDNITVVERDADIIWELDFIFAKAKFGNEL 286
Query: 343 GGTSPNI 349
G PN+
Sbjct: 287 NGNIPNV 293
>gi|363893691|ref|ZP_09320786.1| hypothetical protein HMPREF9629_01112 [Eubacteriaceae bacterium
ACC19a]
gi|361963493|gb|EHL16565.1| hypothetical protein HMPREF9629_01112 [Eubacteriaceae bacterium
ACC19a]
Length = 785
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 180/645 (27%), Positives = 310/645 (48%), Gaps = 107/645 (16%)
Query: 203 IKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD- 259
I D AS L++ R Q+ ++ + ++ + + + + V+ + R + ++
Sbjct: 142 ISDDASADLRRIRRQINSEKQNIKNKLNEFVSSSKYSKILQDSVVTMRNERFVVPVKSEN 201
Query: 260 QLSFKGLLL-SSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDE 318
+ F G++ +SSSG IEP++ V +N+ L + K E +L LT + ++
Sbjct: 202 RADFPGIVHDTSSSGATMFIEPMAIVNMNNRLSTLKQEEHKEIERILAYLTSLVGEYCED 261
Query: 319 IEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIY 378
I + + QLD + A+ S+ P I ++R++ I
Sbjct: 262 ISHNCDILEQLDFIMAKGKLSVEMNAIEPKI---------------------NDRKY-IK 299
Query: 379 LPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSA 438
L A HPL+ EKD +S +
Sbjct: 300 LINARHPLI------------------------------------EKDKVVSST------ 317
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
I + + L+ITGPNTGGKT+ LKT+GL +M ++GLHI + +
Sbjct: 318 ----------IILGGEYSTLIITGPNTGGKTVTLKTLGLCSLMFQAGLHIPCDLESTICI 367
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
FD+VFADIGDEQS+ QSLSTFS H+ I I+ + SLVL DE+GAGT+P+EG L +
Sbjct: 368 FDNVFADIGDEQSIQQSLSTFSAHMTNIVYIMDNVGNNSLVLFDELGAGTDPIEGAGLAV 427
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
S+LE +S ++LT+ATTH+ ELK + + NA +EFD L PTYK+L GVPG+S+
Sbjct: 428 SILEKL-KSKNILTVATTHYSELKNYALTQENVTNASVEFDINTLSPTYKLLIGVPGKSN 486
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A I+++LGL ++ +A++ S ++ +VI ++E+ +T + + E + L
Sbjct: 487 AFEISKKLGLSEEIINSAKEHIKTDSIQMEDVISKLEKIRTDYEKKQEELQKEL------ 540
Query: 679 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
+++ R K+ Q+ + + I DA AR L+ A ++ K
Sbjct: 541 -EDVKYIRLKLENKEQRQKEQNKKLIEDAKEKARKLIE--------DAKSEADIISKNLN 591
Query: 739 QLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP 798
+++ S+ + + + L +N + E A + ++ + K E
Sbjct: 592 KIKNSSDYK----NIDRQMNELKTNINKYK----EKYAKSKEELI-----AKSSKPLENI 638
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIVT 843
NVGD+V+V+SF K V+ V+ +K+E+++++G +K +K ++ T
Sbjct: 639 NVGDIVYVNSFAKNAKVLSVDDAKDEVLIELGAIKMTVKKENLST 683
>gi|358466142|ref|ZP_09175997.1| MutS2 family protein [Fusobacterium sp. oral taxon 370 str. F0437]
gi|357069345|gb|EHI79268.1| MutS2 family protein [Fusobacterium sp. oral taxon 370 str. F0437]
Length = 778
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 187/656 (28%), Positives = 310/656 (47%), Gaps = 117/656 (17%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L + + F E ++ G
Sbjct: 133 INKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFDEPSLANAFQERIITERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVTPVKFD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVT 365
L + E ++ + D+I + + + LD++NA++ Y++ P +
Sbjct: 250 LRIAELLRNNRDDILAIGDKAMYLDILNAKSIYAVDNKCEIPTV---------------- 293
Query: 366 SKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEK 425
S RE + L KA HP + +K
Sbjct: 294 -----SNRE-VLSLEKARHPFI------------------------------------DK 311
Query: 426 DTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG 485
D + P+ +I + +L+ITGPNTGGKT+ LKT GL +MA SG
Sbjct: 312 DKVV--------------PLTFEI--GKDYDILLITGPNTGGKTVALKTAGLLTLMALSG 355
Query: 486 LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIG 545
+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I++ T SLVLLDE+G
Sbjct: 356 IPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILAGVTKNSLVLLDELG 415
Query: 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKP 605
+GT+P+EG A M++++ E + + TTH+ ++K Y+ + E A MEF+ L P
Sbjct: 416 SGTDPIEGAAFAMAVIDYLNEKKA-KSFITTHYSQVKAYGYNEEGVETASMEFNTDTLSP 474
Query: 606 TYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHV 665
TY++L G+PG S+A+ IA+R+GLP ++ AR + ++ E +IE + K+Q L+ +
Sbjct: 475 TYRLLVGIPGESNALTIAQRMGLPESIISKARAYISEDNKKV-EKMIENIKTKSQELDEM 533
Query: 666 HEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPS 725
E L L + + I+E ++ I ++ ++ + +
Sbjct: 534 RERFARLQEEARLDRERAKQETLIIEKQKNE-------------IIKAAYEEAEKMMNEM 580
Query: 726 ASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKD 785
++A +LV K ++ ++ KN ++L++ ++ VE VVK
Sbjct: 581 RAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VVKK 628
Query: 786 IKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
IK K VGD V V S + ++K+ SKE VQ G +K + F +I
Sbjct: 629 IKTKVNFK------VGDRVFVKSINQFANILKINTSKESASVQAGILKLEVPFEEI 678
>gi|422314862|ref|ZP_16396313.1| MutS2 protein [Fusobacterium periodonticum D10]
gi|404593261|gb|EKA94832.1| MutS2 protein [Fusobacterium periodonticum D10]
Length = 778
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 187/656 (28%), Positives = 310/656 (47%), Gaps = 117/656 (17%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L + + F E ++ G
Sbjct: 133 INKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFDEPSLANAFQERIITERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVTPVKFD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVT 365
L + E ++ + D+I + + + LD++NA++ Y++ P +
Sbjct: 250 LRIAELLRNNRDDILAIGDKALYLDILNAKSIYAVDNKCEIPTV---------------- 293
Query: 366 SKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEK 425
S RE + L KA HP + +K
Sbjct: 294 -----SNRE-VLSLEKARHPFI------------------------------------DK 311
Query: 426 DTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG 485
D + P+ +I + +L+ITGPNTGGKT+ LKT GL +MA SG
Sbjct: 312 DKVV--------------PLTFEI--GKDYDILLITGPNTGGKTVALKTAGLLTLMALSG 355
Query: 486 LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIG 545
+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I++ T SLVLLDE+G
Sbjct: 356 IAIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILAGVTKNSLVLLDELG 415
Query: 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKP 605
+GT+P+EG A M++++ E + + TTH+ ++K Y+ + E A MEF+ L P
Sbjct: 416 SGTDPIEGAAFAMAVIDYLNEKKA-KSFITTHYSQVKAYGYNEEGIETASMEFNTDTLSP 474
Query: 606 TYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHV 665
TY++L G+PG S+A+ IA+R+GLP ++ AR + ++ E +IE + K+Q L+ +
Sbjct: 475 TYRLLVGIPGESNALTIAQRMGLPESIISKARAYISEDNKKV-EKMIENIKTKSQELDEM 533
Query: 666 HEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPS 725
E L L + + I+E ++ I ++ ++ + +
Sbjct: 534 RERFARLEEEARLDRERAKQETLIIEKQKNE-------------IIKAAYEEAEKMMNEM 580
Query: 726 ASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKD 785
++A +LV K ++ ++ KN ++L++ ++ VE VVK
Sbjct: 581 RAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VVKK 628
Query: 786 IKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
IK K VGD V V S + ++K+ SKE VQ G +K + F +I
Sbjct: 629 IKTKVNFK------VGDRVFVKSINQFANILKINTSKESASVQAGILKLEVPFEEI 678
>gi|363892244|ref|ZP_09319412.1| MutS2 family protein [Eubacteriaceae bacterium CM2]
gi|361964194|gb|EHL17238.1| MutS2 family protein [Eubacteriaceae bacterium CM2]
Length = 785
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 169/575 (29%), Positives = 279/575 (48%), Gaps = 103/575 (17%)
Query: 269 SSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQ 328
+SSSG IEP++ V +N+ L + K E +L LT + ++I + + Q
Sbjct: 212 TSSSGATMFIEPMAIVNMNNRLSTLKQEEHKEIERILAYLTSLVGEYCEDISHNCDILEQ 271
Query: 329 LDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL 388
LD + A+ S+ P I ++R++ I L A HPL+
Sbjct: 272 LDFIMAKGKLSVEMNAIEPKI---------------------NDRKY-IKLINARHPLI- 308
Query: 389 QQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPID 448
EKD +S +
Sbjct: 309 -----------------------------------EKDKVVSST---------------- 317
Query: 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD 508
I + + L+ITGPNTGGKT+ LKT+GL +M ++GLHI + + FD+VFADIGD
Sbjct: 318 IILGGEYSTLIITGPNTGGKTVTLKTLGLCSLMFQAGLHIPCDLESTICIFDNVFADIGD 377
Query: 509 EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
EQS+ QSLSTFS H+ I I+ + SLVL DE+GAGT+P+EG L +S+LE +S
Sbjct: 378 EQSIQQSLSTFSAHMTNIVYIMDNVGNNSLVLFDELGAGTDPIEGAGLAVSILETL-KSK 436
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
++LT+ATTH+ ELK + + NA +EFD L PTYK+L GVPG+S+A I+++LGL
Sbjct: 437 NILTVATTHYSELKNYALTQENVTNASVEFDINTLSPTYKLLIGVPGKSNAFEISKKLGL 496
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK 688
++ +A++ S ++ +VI ++E+ +T + + E + L +++ R K
Sbjct: 497 SEEIINSAKEHIKTDSIQMEDVISKLEKIRTDYEKKQEELQKEL-------EDVKYIRLK 549
Query: 689 ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL 748
+ Q+ + + I DA AR L+ A ++ K +++ S+
Sbjct: 550 LENKEQRQKEQNKKLIEDAKEKARKLIE--------DAKSEADIISKNLNKIKNSSDYK- 600
Query: 749 HCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSS 808
+ + + L +N + E A + ++ + K E NVGD+V+V+S
Sbjct: 601 ---NIDRQMNELKTNINKYK----EKYAKSKEELI-----AKSSKPLENINVGDIVYVNS 648
Query: 809 FGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIVT 843
F K V+ V+ +K+E+++++G +K +K ++ T
Sbjct: 649 FAKNAKVLSVDDAKDEVLIELGAIKMTVKKENLST 683
>gi|336428866|ref|ZP_08608841.1| MutS2 protein [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336004409|gb|EGN34474.1| MutS2 protein [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 792
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 224/813 (27%), Positives = 376/813 (46%), Gaps = 159/813 (19%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGRE-----ATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
L LE++K+ + ++ A + GR+ +T L I QT Q ++ +A + K
Sbjct: 6 LNTLEYNKIINRLTEHATSDPGRKLCRELVPMTDLEEI-QTAQ-----METRDALTRLFK 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQ---LSLRAAIKE 165
GS S G + L S ++ + S L E L + LL+ + ++ R E
Sbjct: 60 KGSISF---GSNRELGMS-LKSLEIGSTLSAPELLRIAGLLENAARVKNYGRQDREDTPE 115
Query: 166 DA--DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
D+ L+ PLT + +++ + + + I D ASP LK R + +
Sbjct: 116 DSLTALFQGIEPLTLLSNEIY----------RCILSEEEIADDASPGLKHVRRSMSITTD 165
Query: 224 KLYQLMDMLIRNENNESL--FLE---VSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV- 277
+++ + ++ N SL +L+ ++S +GR CI A+ S ++ S GS
Sbjct: 166 RIHSQLSGMV----NGSLHSYLQDALITSRNGRYCIPVKAEYRSQVPGMIHDQSSTGSTL 221
Query: 278 -IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARA 336
+EP + V LN+++++ + E VL +L+ ++ ++I + + LD + A+A
Sbjct: 222 FVEPAAVVNLNNQMRELEIKEQEEIEKVLASLSAQVAEHTEDIAENQRILTLLDFIFAKA 281
Query: 337 TYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQ 396
+ +L T EP+ ++ + + + A HPLL K+KT
Sbjct: 282 SLALEQNAT----------------EPIFNE------DHILNIRGARHPLL---DKKKT- 315
Query: 397 QAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTR 456
VPIDI + R
Sbjct: 316 ------------------------------------------------VPIDIRLGRDYD 327
Query: 457 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSL 516
+L+ITGPNTGGKT+ LKT GL +M ++GLHI + + +++ F V+ADIGDEQS+ QSL
Sbjct: 328 LLIITGPNTGGKTVSLKTTGLFCLMGQAGLHIPALDRSELSIFREVYADIGDEQSIEQSL 387
Query: 517 STFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 576
STFS H+ I +I+ + + SL L DE+GAGT+P EG AL +++L + G + T+ATT
Sbjct: 388 STFSSHMTSIVSILKNADADSLCLFDELGAGTDPTEGAALAIAILNFLHDRG-IRTMATT 446
Query: 577 HHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 636
H+ ELK S F ENAC EFD L+PTY++L G+PG+S+A I+ RLGL ++ +A
Sbjct: 447 HYSELKVYALSTSFVENACCEFDVESLRPTYRLLIGIPGKSNAFAISSRLGLSDDIINSA 506
Query: 637 RQLYGAASAEINEVIIEMERFKTQF----LEHVHEARHFLMLSRNL---HKNLLRTRRKI 689
R A + +++ ++E+ + LE R L + L + + + + +I
Sbjct: 507 RTQISAEAKSFEDLLTDLEQSRVTIEKEQLEIASYKREVEALKKQLEAKQEKIDQAKERI 566
Query: 690 LEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLH 749
L A+++ R++ + DA A + ++ Q+ P AS + K + LR S
Sbjct: 567 LRE-ANEQAREI--LQDAKNTADETI-RAFQKAGPGASMKD--LEKARENLRGKISD--- 617
Query: 750 CTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSF 809
KN+ + N Q PA + VK ++L +G+ V + S
Sbjct: 618 -----KNEKLAVKNQQ---------PAQSG------------VKPSQL-KLGESVRIVSM 650
Query: 810 GKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
G KGTV + +K + VQ G ++ D+V
Sbjct: 651 GLKGTVSTMPDNKGNLFVQCGIIRTQTNIRDLV 683
>gi|429736042|ref|ZP_19269961.1| MutS2 family protein [Selenomonas sp. oral taxon 138 str. F0429]
gi|429156327|gb|EKX98960.1| MutS2 family protein [Selenomonas sp. oral taxon 138 str. F0429]
Length = 785
Score = 232 bits (592), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 204/799 (25%), Positives = 377/799 (47%), Gaps = 137/799 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ES +VLE++K+ + ++SFA + G+E + + S + Y +RL ET A+++Q+ S
Sbjct: 4 ESFKVLEYEKITNWLASFAASVRGKERCRSVIPSGD--YDAVVRLHAETAEAVQIQQMQS 61
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
G+ DL ++ +++ +S L +E ++++ + ++ R + +D L
Sbjct: 62 PPFG--GIYDL---RAILKKATMSSVLELDELRSIMSTMGGMRNVKYFFRDLV-QDVSL- 114
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
L M + + +L + + +DE G+ +D ASP L++ ++ + ++ +
Sbjct: 115 -----LKDMARPIEILGTLERHLKDTIDEHGNFRDDASPELRRITRELHTAQARVKDRLS 169
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
++ + N+ F E V+ R I + + F G++ SSSG +EPL+ V L
Sbjct: 170 AILHDAANQKYFQEAIVTVRDERYVIPVKQEYRNYFPGVIHDQSSSGATLFVEPLATVEL 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ ++Q + + + +L L+ ++ + + + ++D++ ARA +
Sbjct: 230 NNTVRQMGLAREQEIQRILQKLSGEIAQSAAILAENCEILAEIDLIFARAGLAREMEAYQ 289
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + R+ + L +A HPLL
Sbjct: 290 PTL----------------------NRDGVVRLKRARHPLL------------------- 308
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
KD + P+ I+ + + +L+ITGPNTG
Sbjct: 309 -----------------SKDKVV--------------PIDIE--LGKNFSILLITGPNTG 335
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ +KT+GL ++A+SG + ++ +++P + +++ADIGDEQS+ QSLSTFS H + I
Sbjct: 336 GKTVSMKTLGLLALLAQSGCFLPTAPDSELPVYPNIYADIGDEQSIEQSLSTFSAHTRNI 395
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
II ++ L+LLDE+GAGT+P EG AL S++E F + + +ATTH+ LKT Y
Sbjct: 396 VRIIDKAQQGDLILLDEVGAGTDPDEGAALARSIIEHFLQR-DIAVLATTHYAALKTYAY 454
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ ENA +EFD L+PTY++L G+PG S+A +I+ +LGLP +V A
Sbjct: 455 TQTGVENASVEFDLKTLRPTYRLLIGIPGASNAFSISRQLGLPQEIVARAEIYVNEEHTH 514
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLH----KNLLRTRRKILEHCASQRFRKVQ 702
V+ E+E+ K + EAR+ ++ + + LR+ R+ L
Sbjct: 515 FERVVNELEQEKKDY-----EARNRVLYDKEREITAVEARLRSERETL------------ 557
Query: 703 KISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTS 762
AA + L+HK AR + ++ R SA +++ K + H +
Sbjct: 558 -----AASRQELLHK-----------AREEANNIVREARRSAEETIKSLKDQFDDHGVKE 601
Query: 763 NFQQTTVDKVEHPATASSSVVKDIKQSPRVK--RTELPNVGDLVHVSSFGKKGTVIKVEP 820
++ + + + + ++ +P K R + GD+V++ S ++GTV+ V+
Sbjct: 602 --RRKAIQEARNRLDEAYVPAHTVRSTPVGKPVRPDDIQTGDIVYIDSLAQEGTVLSVQ- 658
Query: 821 SKEEIVVQVGNMKWIMKFT 839
E+ VQVG ++ I+K +
Sbjct: 659 -GHELAVQVGGLRTIVKMS 676
>gi|401565428|ref|ZP_10806266.1| MutS2 family protein [Selenomonas sp. FOBRC6]
gi|400187177|gb|EJO21373.1| MutS2 family protein [Selenomonas sp. FOBRC6]
Length = 785
Score = 232 bits (591), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 203/799 (25%), Positives = 378/799 (47%), Gaps = 137/799 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ES +VLE++K+ + ++SFA + G+E + + S + Y + +RL ET A+++Q+ S
Sbjct: 4 ESFKVLEYEKITNWLASFAASVRGKERCRSVIPSGD--YDEVVRLHAETAEAVQIQQMQS 61
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
G+ DL ++ +++ +S L +E ++++ + ++ R + +D L
Sbjct: 62 PPFG--GIYDLRVI---LKKATMSSVLELDELRSIMSTMGGMRNVKYFFRDLV-QDVSL- 114
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
L M + + +L + + +DE G+ +D ASP L++ ++ + ++ +
Sbjct: 115 -----LKDMARPIEILGTLERHLRDTIDEHGNFRDDASPELRRITRELHTAQARVKDRLS 169
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
++ + N+ F E V+ R I + + F G++ SSSG +EPL+ V L
Sbjct: 170 AILHDAANQKYFQEAIVTVRDERYVIPVKQEYRNYFPGVIHDQSSSGATLFVEPLATVEL 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ ++Q + + + +L L+ ++ + + + ++D++ ARA +
Sbjct: 230 NNIVRQMGLAREQEIQRILQKLSGEIAQSAAILAENCEILAEIDLIFARAGLAREMEAYP 289
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P + R+ + L +A HPLL
Sbjct: 290 PTL----------------------NRDGIVQLKRARHPLL------------------- 308
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
KD + P+ I+ + + +L+ITGPNTG
Sbjct: 309 -----------------SKDKVV--------------PIDIE--LGKNFSILLITGPNTG 335
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ +KT+GL ++A+SG + ++ +++P + +++ADIGDEQS+ QSLSTFS H + I
Sbjct: 336 GKTVSMKTLGLLALLAQSGCFLPTAPDSELPVYPNIYADIGDEQSIEQSLSTFSAHTRNI 395
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
II ++ L+LLDE+GAGT+P EG AL S++E F + + +ATTH+ LKT Y
Sbjct: 396 VRIIDKAQQGDLILLDEVGAGTDPDEGAALARSIIEHFLQR-DIAVLATTHYAALKTYAY 454
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ ENA +EFD L+PTY++L G+PG S+A +I+ +LGLP +V A
Sbjct: 455 TQTGVENASVEFDLKTLRPTYRLLIGIPGASNAFSISRQLGLPQEIVARAEIYVNEEHTH 514
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLH----KNLLRTRRKILEHCASQRFRKVQ 702
V+ E+E+ K + E R+ ++ + + LR+ R+ L
Sbjct: 515 FERVVNELEQEKKDY-----EIRNRVLYDKEREITAVEARLRSERETL------------ 557
Query: 703 KISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTS 762
AA + L+HK AR + ++ R SA +++ K + H +
Sbjct: 558 -----AASRQELLHK-----------AREEANNIVREARRSAEETIKSLKDQFDDHGVKE 601
Query: 763 NFQQTTVDKVEHPATASSSVVKDIKQSPRVK--RTELPNVGDLVHVSSFGKKGTVIKVEP 820
++ + + + + + ++ +P K R + GD+V++ S ++GTV+ V+
Sbjct: 602 --RRKAIQEARNRLDEAYVPARTVRSTPVGKPMRPDDIQTGDIVYIDSLAQEGTVLSVQ- 658
Query: 821 SKEEIVVQVGNMKWIMKFT 839
E+ VQVG ++ I+K +
Sbjct: 659 -GHELAVQVGGLRTIVKMS 676
>gi|312900671|ref|ZP_07759968.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0470]
gi|311292152|gb|EFQ70708.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0470]
Length = 788
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 145/391 (37%), Positives = 225/391 (57%), Gaps = 32/391 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFA
Sbjct: 317 VANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 GAKGAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L
Sbjct: 496 RLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKE 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ E +R +++QK K A ++ A + + ++++ +
Sbjct: 556 AYQVFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLES 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPAT--ASSSVVKDIKQSPRVKRTELPNVGD 802
Q + G +H L +T + ++ H T A + V+K K+ R+K GD
Sbjct: 601 GQ-----QGGVKEHQLID--AKTQLSQLHHEETKLAKNKVLKKAKEQKRLK------AGD 647
Query: 803 LVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
V V+++G++GT++K + K + VQ+G +K
Sbjct: 648 EVIVNTYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|335996984|ref|ZP_08562901.1| DNA mismatch repair protein [Lactobacillus ruminis SPM0211]
gi|335352054|gb|EGM53545.1| DNA mismatch repair protein [Lactobacillus ruminis SPM0211]
Length = 786
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 228/803 (28%), Positives = 377/803 (46%), Gaps = 139/803 (17%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
L+ LE+DK+ + + ++A T +G+ S + + + + LDET K G+
Sbjct: 5 GLKTLEYDKVKNMLLAYATTEMGKNMVFELAPSSDCEWIE--QALDET-------KDGAD 55
Query: 113 SLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
L L G L VK ++ + + L E +L+ + + R ++ +
Sbjct: 56 ILRLKGGIPIPKLESVKKHLKRLDIGASLSAKELAETGRVLRVTNETKRFFRDLEADEIE 115
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L + + V+R L+ SI + DG + D AS L R Q+ E ++
Sbjct: 116 LNHLYDEADMLETLPDVSRRLLMSI----ENDGHVTDEASSLLASLRRQITTTEGEIRNR 171
Query: 229 MDMLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
+ +R ++++ L + +I R I A+ + +F G++ SSSG IEP V
Sbjct: 172 LGNFVRGKSSKYLSDSLVTIRNERYVIPVKAEYKNAFGGIVHDQSSSGQTLFIEPKEIVE 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ L+Q + + + + +L L+E + +EIE + + D +NA+A
Sbjct: 232 LNNRLRQQQIAEKEEIKRILEELSELIAPYTEEIENNAKILGKFDFINAKAK-------- 283
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
L D+K + +P+ S RE +YL + +HPL
Sbjct: 284 -----LAHDLKAT---QPLIS------RENDVYLRQVWHPL------------------- 310
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
L+ V D+ I + + +VITGPNT
Sbjct: 311 ---------------------------------LDSKKAVRNDVAIGKDYQAIVITGPNT 337
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKTI LKT+GL MM +SGL I + E +++ FD +FADIGDEQS+ QSLSTFS H+
Sbjct: 338 GGKTITLKTLGLVSMMGQSGLFIPAFENSRIGVFDDIFADIGDEQSIEQSLSTFSSHMTN 397
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I+ + +SLVL DE+GAGT+P EG AL +++L+A GS + +ATTH+ ELK
Sbjct: 398 TVEILKRIDERSLVLFDELGAGTDPQEGAALAIAILDAVGAKGSYV-VATTHYPELKAYG 456
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
Y NA MEFD LKPTY +L G+PGRS+A +I++RLGL +V+ ARQL S
Sbjct: 457 YERPQTINASMEFDAETLKPTYHLLIGIPGRSNAFDISKRLGLDDAIVEAARQLTDQDSQ 516
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL-------LRTRRKILEHCASQRF 698
++NE+I ++ + + + E + +L S LH +L +R R ++E
Sbjct: 517 DLNEMIADLVQKRHEAEEEKARFKKYLDESEKLHADLEKGYGTYVRERDNMIETAK---- 572
Query: 699 RKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQH 758
RK +I + A K ++++ S +HK ++ S + S+ K
Sbjct: 573 RKANEIIENA-------QKKSEEII-------SELHK----MKQSGASSI------KENE 608
Query: 759 VLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKV 818
++ + ++ ++ +E P ++K K R K+ + + D V V ++G++G + K
Sbjct: 609 LIDA---RSRLNDLEQPI-----MLKKNKVLQRAKKQQEFHENDDVLVKTYGQRGVLTK- 659
Query: 819 EPSKEEIVVQVGNMKWIMKFTDI 841
K E VQ+G +K + D+
Sbjct: 660 RLGKHEWEVQLGILKMKIDEDDL 682
>gi|403668407|ref|ZP_10933682.1| MutS2 protein [Kurthia sp. JC8E]
Length = 789
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 227/811 (27%), Positives = 375/811 (46%), Gaps = 144/811 (17%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK 108
+ +L+ LE+DK+ V+ +A SLG+E L +L T ++ LL+E + + + +
Sbjct: 2 IAQRALKTLEFDKVREQVAKYATCSLGQEG-LEKLAPAT-TLEEVQSLLEEMDEGLSILR 59
Query: 109 -HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKE 165
GS + + ++ R + L P E L++ S T++ S R I+
Sbjct: 60 IKGSVPMG----GIFDIRPHARRAQIGGILSPKE------LMEISSTIRASRIFREFIEV 109
Query: 166 -DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
+AD I +L + L I +D++ + DSAS AL+ R Q++ E +
Sbjct: 110 IEADNEIEIPLFIAKKEELPILTGLQHEINSCIDDNAKVMDSASQALRGIRTQLRTQEGR 169
Query: 225 LYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEP 280
+ + L R + + ++ + R I A+ S G ++ S+SG IEP
Sbjct: 170 VRDRLASLTRGSAAAKMLSDSIITLRNDRFVIPVKAEYRSHYGGVIHDQSASGQTLYIEP 229
Query: 281 LSAVPLNDELQQARASVTKAEED-VLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
+ V N+E+Q + KAE D +LL L+ K+Q + ++ + +DVV A+A Y
Sbjct: 230 DAVVQANNEIQNLKVK-EKAEIDRILLELSSKVQEVAHSLFVLVQILAAIDVVLAKAKYG 288
Query: 340 LSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAW 399
+ T P + ++R + + L KA HPLL
Sbjct: 289 QANKCTMPIM---------------------NDRGY-MKLTKARHPLL------------ 314
Query: 400 KDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLV 459
D E+A V DI +V
Sbjct: 315 -DAETA---------------------------------------VANDIEFGDDITTIV 334
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
+TGPNTGGKT+ LKT+GL +MA++GL I + + +++ F +FADIGDEQS+ QSLSTF
Sbjct: 335 VTGPNTGGKTVSLKTIGLCTLMAQAGLPIPALDGSELSVFTQLFADIGDEQSIEQSLSTF 394
Query: 520 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579
S H+ I I+ Q +SLVL DE+GAGT+P EG AL +S+L+ G+ + +ATTH+
Sbjct: 395 SSHMVNIVEILKQFDDRSLVLFDELGAGTDPQEGAALAISILDEVHGRGARV-MATTHYP 453
Query: 580 ELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 639
ELK Y+ NA MEF+ L PTY++L GVPGRS+A I++RLGLP +++ ++
Sbjct: 454 ELKAYGYNRPGVINASMEFNVDTLSPTYRLLIGVPGRSNAFEISKRLGLPEHIIEASKAF 513
Query: 640 YGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL------LRTRRKILEHC 693
G + E+ +I +E + + + E L + L +L +++ LE+
Sbjct: 514 TGTETHEVESMIASLETSRLEAEKDAEETARLLEEANELRADLDAQMAEYEAKKETLENK 573
Query: 694 ASQRFRKVQKISDAAAIARSLV---HKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHC 750
A ++ RK+ + +A A ++ HK Q A + ++ R ++L +A
Sbjct: 574 AKEKARKI--VEEAKREAEEVIDELHK-MQHRANKAVKEHEIIDAR-KRLEGAA------ 623
Query: 751 TKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFG 810
PA + + K +Q+ R K+ VGD V V S+G
Sbjct: 624 ------------------------PAQENRILKKQRQQNARAKQL---RVGDEVKVLSYG 656
Query: 811 KKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
++GT+I + + + VVQ+G +K + D+
Sbjct: 657 QRGTLIDRDKTG-DWVVQIGILKMKLPEDDL 686
>gi|332522497|ref|ZP_08398749.1| MutS2 family protein [Streptococcus porcinus str. Jelinkova 176]
gi|332313761|gb|EGJ26746.1| MutS2 family protein [Streptococcus porcinus str. Jelinkova 176]
Length = 777
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 152/398 (38%), Positives = 224/398 (56%), Gaps = 41/398 (10%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PVP D+ +R+ V+VITGPNTGGKTI LKT+GLA +M +SGL IL+ + + + F
Sbjct: 307 LKNPVPNDLHFSRQLSVIVITGPNTGGKTIMLKTLGLAQIMGQSGLPILADQGSSIAVFT 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTNIVAILDKADQDSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + + T+ATTH+ ELK F ENA MEFD LKPTY + GVPGRS+A
Sbjct: 427 LEQLRLT-EIKTMATTHYPELKAYGIETAFVENASMEFDSRSLKPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSR-NLH 679
IA RLGL +V A Q+ + S ++N +I E+E+ Q LE H H + + NL
Sbjct: 486 EIARRLGLADHIVNQAEQMTDSDS-DVNRIIEELEK---QTLESRHRLDHIKEVEQDNLK 541
Query: 680 KNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQ 739
N R +K+ A + ++++K S A +L ++++ +A L + Q
Sbjct: 542 FN--RAVKKLYHEFAQAKNKEIEKASLEAQEIVTLALAESEEILAKLHEASVL---KPHQ 596
Query: 740 LRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPN 799
+ + SQ L QT + + V+K + K+ P
Sbjct: 597 IIEAKSQ-------------LKKLIPQTEL--------TQNKVLK------KAKKLRQPQ 629
Query: 800 VGDLVHVSSFGKKGTVIK-VEPSKEEIVVQVGNMKWIM 836
VGD + V+++G++GT++K V+ +K E QVG +K +
Sbjct: 630 VGDDILVTAYGQRGTLLKQVKGNKWE--AQVGLIKMTL 665
>gi|222529627|ref|YP_002573509.1| MutS2 family protein [Caldicellulosiruptor bescii DSM 6725]
gi|254766186|sp|B9MK78.1|MUTS2_ANATD RecName: Full=MutS2 protein
gi|222456474|gb|ACM60736.1| MutS2 family protein [Caldicellulosiruptor bescii DSM 6725]
Length = 787
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 218/796 (27%), Positives = 371/796 (46%), Gaps = 123/796 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L+ LE+DK+ + + A+++ +E + S N ++ L +DE+ + K+G
Sbjct: 4 KTLKALEYDKIVEILKNMAKSTPAKEYFENLIPSTNVADIENELNKVDESYRYV--LKYG 61
Query: 111 SC-SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ +L+ + SL KS + + L P+E L + +L+ S ++ L + +D
Sbjct: 62 NLPTLEFENILPSLKKSKL-----GATLNPHEILQIGKVLKLSYEMRTYL--SFTQD--- 111
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
F L M +L + +I I Q I D+AS LK+ R +++ LE K+ +
Sbjct: 112 ---FSFLESMKKRLVNLKEVISRIDQTFLTPDEILDTASSKLKEIRDKIRKLENKIRDEL 168
Query: 230 DMLIRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
+ +IR+ + E + +I G +L + A+ + KG++ S++G +EP V
Sbjct: 169 NSMIRDPKIQRFLQEPIITIRGEKLLLPVKAEFRNEVKGIVHDQSATGATLFVEPFVCVE 228
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
++++++ + + E +L ++ + + IE +++LD+V +A ++ +
Sbjct: 229 ISNQIKILKNQEKEEIERILQEISSLIASYCEVIETSFYALVELDIVFTKAIWAKEMNAS 288
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
P I I L KA HPL+
Sbjct: 289 KPII----------------------NASGIINLKKARHPLI------------------ 308
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
+KD +V +++ D+ I ITGPNT
Sbjct: 309 ------------------QKD--------KVVPIDIHLGKDFDVLI--------ITGPNT 334
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKTVGL ++ +SG+ I + E +++ F +FADIGD+QS+ QSLSTFS H+K
Sbjct: 335 GGKTVTLKTVGLFCLLCQSGIFIPADEGSELCIFQKIFADIGDDQSIVQSLSTFSAHMKN 394
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I I + ++LVLLDEIGAGT+P EG AL ++L+ +E GS + IATTH+GELK
Sbjct: 395 IIEITKNADDKTLVLLDEIGAGTDPEEGAALAKAILKYLSEKGSKV-IATTHYGELKIFA 453
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
D FENA EFD LKPTY++L G+PGRS+A+ I+ LGL +V+ AR +
Sbjct: 454 QQEDRFENASCEFDVKTLKPTYRLLIGIPGRSNALVISSNLGLDKGIVEMARGYLSQKTI 513
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKIS 705
+++ +I EME+ + + E++ A+ ++ L +++ +R RK
Sbjct: 514 DLDRIINEMEQKRKEAEENLELAQKLKHEAQALKAAYEEEKKRF--ETERERIRK----- 566
Query: 706 DAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQ 765
A A+ +V S ++ R L A+ L+ K + + ++ S Q
Sbjct: 567 KAINEAKEIVESSQYEIENLFKDLRKL----AENLKEKEVLKELEEKKREYERLIQSISQ 622
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEI 825
Q VK +S K + +G V+V SF +G V + SK +
Sbjct: 623 Q----------------VKQEAESKTKKTIQNLRLGQKVYVRSFDAEGFVESLPDSKGNL 666
Query: 826 VVQVGNMKWIMKFTDI 841
VQ+G MK + +DI
Sbjct: 667 TVQIGIMKINVNLSDI 682
>gi|156740089|ref|YP_001430218.1| MutS2 family protein [Roseiflexus castenholzii DSM 13941]
gi|156231417|gb|ABU56200.1| MutS2 family protein [Roseiflexus castenholzii DSM 13941]
Length = 826
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 224/818 (27%), Positives = 374/818 (45%), Gaps = 147/818 (17%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQT-YQDSLRLLDETNAAIEMQ 107
+ ++L LE+ K+ ++ +A S+ RE L + S++ + LR DE ++
Sbjct: 3 IARQTLDTLEFPKVRQHLARYAAFSVSREMALNLIPSVDPVDVRRRLRRTDEARRLLDEM 62
Query: 108 KHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
DLT V+ A RR L + A L + L+ +L +K D
Sbjct: 63 P------DLTIGGARDVRPAAGLARRGGVCDATTLLEIAATLAGARRLRATL---LKLDP 113
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQM----LER 223
D F+ L ++ L ++ +I + + +DG + DSASP L + R +V++ L+
Sbjct: 114 D---HFLLLREIAADLPALPAIEDAIGRAIGDDGQVLDSASPKLARLRAEVRIAFNRLQE 170
Query: 224 KLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEP 280
KL+ L+ + ++++L + ++ +GR + A + + +GL+ S+SG IEP
Sbjct: 171 KLHNLITI-----HSDALQEPIITVRNGRYVVPVKATHRRAIRGLVHDQSASGATLYIEP 225
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
L+ V LN+ ++A+ + K E +L L+ ++ D + ++ G+ L AT L
Sbjct: 226 LTIVDLNNAWREAQLAEQKEVERILAELSAQVG---DHADAIVTGVESL------ATLDL 276
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
+F + + R + E V + S E + L A HPL
Sbjct: 277 AFAMARYAVAM-----RCVMPEIVDAPPSPDE--PLLLLTAARHPL-------------- 315
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
+ P ++ VPID+ + R+L+I
Sbjct: 316 ----------------------------IDPQQV----------VPIDMRLGGSFRILLI 337
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT+ LKT GL +MA++G+H+ ++ ++VP F +FADIGDEQS+ QSLSTFS
Sbjct: 338 TGPNTGGKTVALKTTGLLALMAQAGMHVPAAHPSRVPVFKQIFADIGDEQSIEQSLSTFS 397
Query: 521 GHLKQIGNII-------SQSTSQS------------------LVLLDEIGAGTNPLEGTA 555
H+ I I+ ++ ++++ LVLLDE+GAGT+P+EG+A
Sbjct: 398 SHMTNIIRILRALEGAPNEESAEAFAADPTPTEPACAERLPALVLLDELGAGTDPVEGSA 457
Query: 556 LGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPG 615
L +++E E G +L +ATTH+ ELK Y+ ENA +EFD L PTYK+ G+PG
Sbjct: 458 LARAIIERLLELG-VLGVATTHYAELKAFAYATPGVENASVEFDVETLAPTYKLTIGLPG 516
Query: 616 RSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLS 675
RS+A+ IA RLGL +++ AR AS +V +E L +H R
Sbjct: 517 RSNALAIAARLGLSPALIERAR-----ASMARQDVQVE------DLLAGIHRERAAAAAE 565
Query: 676 RNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHK 735
+ K E A++ + S+A AR + + QARS V +
Sbjct: 566 LQRAMEVRADAEKYRERLAAELREFEARRSEAWQSARDEIEAELR-------QARSEVRR 618
Query: 736 RAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT 795
+ R + + + H + ++ +T A A +V ++Q PR
Sbjct: 619 LRDEFRSVSVSRRWLEEAEQRLHEVRASLPETPTG-----ALAERAVTTVVEQGPRPL-- 671
Query: 796 ELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
+ GD+V V S G G ++ ++ ++ VQVG +
Sbjct: 672 ---HPGDVVRVRSVGLIGEILSIDEEEQTAEVQVGGFR 706
>gi|300362246|ref|ZP_07058422.1| DNA mismatch repair protein MutS [Lactobacillus gasseri JV-V03]
gi|300353237|gb|EFJ69109.1| DNA mismatch repair protein MutS [Lactobacillus gasseri JV-V03]
Length = 791
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 218/794 (27%), Positives = 373/794 (46%), Gaps = 133/794 (16%)
Query: 57 LEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDL 116
LE++++ +S A T+ + L + S + DE +I+ + S L +
Sbjct: 12 LEYNRIIKQLSDLAITAPAKAQALKLMPSSD---------FDEVKKSIDQTRVLSNILRV 62
Query: 117 TG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETL-QLSLRAAIKEDADLYI 171
G D V+ +++ ++ + L E + +L ++ + Q + +E I
Sbjct: 63 KGPMPITDFKDVRPSLKRLKVKANLNGEELGNIFLVLSLAKDVGQFTSDLEERE-----I 117
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
P+ + + L V+ L K + Q ++ DG++KD+AS L Q R +Q E + M+
Sbjct: 118 DTRPIEKYLKNLAVSEDLFKKLNQSIEYDGTVKDTASSKLMQLRHDIQSNETDIKNHMND 177
Query: 232 LIRNENNESLFLEVSSIH-GRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
I ++ + L + +I GR + + + F G++ S+SG +EP + + LN+
Sbjct: 178 YISGKHTQYLSENIVTIRDGRYVLPVKQEYKNKFGGVVHDQSASGQTLFVEPQAVLVLNN 237
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
Q A + +L+ L+E EI+ + QLD ++A++ + T P
Sbjct: 238 RQQNLLAQERQEIHRILIELSELAGTYQKEIKNNAVALAQLDFLSAKSKLAKKMKATEP- 296
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
L QD I L KA HPL+
Sbjct: 297 -VLNQD--------------------HVIKLRKARHPLI--------------------- 314
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
P ++ VP +I + ++ITGPNTGGK
Sbjct: 315 ---------------------DPKKV----------VPNNIELGTTFDTMLITGPNTGGK 343
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
TI LKT+GL +MA++GL I + E +++ F+ ++ADIGDEQS+ QSLSTFS H+ QI
Sbjct: 344 TITLKTLGLLQLMAQAGLFITAEEGSQLTVFNEIYADIGDEQSIEQSLSTFSSHMDQIIK 403
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I++ T LVL+DE+GAGT+P EG +L +++L+ ++ + + I TTH+ ELK Y+
Sbjct: 404 IMNNVTEDDLVLIDELGAGTDPEEGASLAIAILDDLRQTQAKIAI-TTHYPELKLYGYNR 462
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
+ NA MEFD KL PTY++ G+PG+S+A IA +LG+ VV AR L ++IN
Sbjct: 463 ERTTNASMEFDLKKLAPTYRLRIGIPGQSNAFAIAHQLGMNEAVVDKARSLMNDEDSDIN 522
Query: 649 EVIIEMERF--KTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++I ER +T+ E +HE L +N+ +++ T ++ L++ ++VQK +
Sbjct: 523 KMI---ERLTEQTKAAEQLHET-----LKQNVDQSI--TLKRQLQNGLDWYNQQVQKQLE 572
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
+ K+ + L QA +++ +Q R A + KV + + L
Sbjct: 573 KSQ------EKADEMLAKKRKQAEKIINDLEEQRR--AGGQVRTNKVIEAKGALNKL--- 621
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
+ E+ A++ V++ R K+ +VGD V V S+G++G + K + E
Sbjct: 622 ----ERENQNLANNKVLQ------REKKRHDVSVGDNVKVLSYGQQGVITK-KLGDHEFE 670
Query: 827 VQVGNMKWIMKFTD 840
VQ+G +K +K TD
Sbjct: 671 VQIGILK--VKVTD 682
>gi|375307738|ref|ZP_09773025.1| MutS2 protein [Paenibacillus sp. Aloe-11]
gi|375080069|gb|EHS58290.1| MutS2 protein [Paenibacillus sp. Aloe-11]
Length = 788
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 162/411 (39%), Positives = 219/411 (53%), Gaps = 52/411 (12%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L VPID+ + +++TGPNTGGKT+ LKT+GL +MA SGL + + +++ FD
Sbjct: 313 LEQVVPIDVELGNSYTSIIVTGPNTGGKTVTLKTIGLLSLMAMSGLFVPVEDESQLCVFD 372
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+++ADIGDEQS+ Q+LSTFS H+ I +I+ T +SLVLLDE+GAGT+P EG+AL +S+
Sbjct: 373 AIYADIGDEQSIEQNLSTFSSHMTNIISILKNMTPKSLVLLDEVGAGTDPAEGSALAVSI 432
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE G + +ATTH+ ELK Y NA MEFD L PTY++L GVPGRS+A
Sbjct: 433 LEHMHAMGCRM-VATTHYSELKAYAYERKGIINASMEFDVATLSPTYRLLVGVPGRSNAF 491
Query: 621 NIAERLGLPGIVVQNARQ---------LYGAASAEINEVIIEMERFKTQFLEHVHEARHF 671
IAERLGLP ++ AR + AS E N + E ER K + L EA
Sbjct: 492 AIAERLGLPSRILDYARGEVTEEDQRVEHMIASLEQNRLTAEQEREKAEQLRREMEA--- 548
Query: 672 LMLSRNLHKNLLRTRRKI-LEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
LR+R + L+ SQR R ++K D AR LV K AR
Sbjct: 549 -----------LRSRHQTELDKLESQRDRMLEKAEDE---ARVLVDK-----------AR 583
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
S K LR A + K +H L + ++ +D+ E P + VK
Sbjct: 584 SEAEKIISDLRKLAQEEGASVK----EHKLIAARKE--LDEAE-PKQRKKNTVKRA---- 632
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
RT GD V V S KKG V+++ SK E VVQ+G MK + D+
Sbjct: 633 -ATRTRSIMAGDEVTVHSLNKKGHVVELSGSK-EAVVQLGIMKMKVSLDDL 681
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 148/302 (49%), Gaps = 22/302 (7%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHGSC 112
+ LE+ K+ + +S +A+T+ G++ L S + + + L+ DE AA ++ G
Sbjct: 6 FKTLEYQKILNKLSHYAQTAAGQQTALRLQPSDDLEHIKKMLKGTDEAYAADRLK--GVP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
S + VD++ A++ R L P E L + +Q + +Q+ + + +E+
Sbjct: 64 SFNGV-VDIT---PAVKRARIGGTLNPQELLGIRTTVQAARRIQVYVASLHEEN------ 113
Query: 173 FMPLTQMIM---QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
P+ ++ QL RSL SI +DE+ + DSAS L Q R +++ E ++ + +
Sbjct: 114 --PVETLLFWSEQLSEQRSLENSIKGCIDENAEVLDSASTELSQIRRELRSGEVRIREKL 171
Query: 230 DMLIRNEN-NESLFLEVSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVP 285
D +IR+ ++ L ++ +I G R I A+ S+ G ++ SG G+ IEP S V
Sbjct: 172 DSMIRSSTVSKMLQDQLITIRGDRFVIPVKAEYRSYFGGIVHDQSGSGATLFIEPESIVA 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
+N++L++ R + E +L LT + D + ++ + LD + A+A + T
Sbjct: 232 MNNKLRETRLREEREIEVILQKLTALVAEQADMLLYDVDILGNLDFIFAKARLAREMKAT 291
Query: 346 SP 347
P
Sbjct: 292 LP 293
>gi|422343730|ref|ZP_16424657.1| hypothetical protein HMPREF9432_00717 [Selenomonas noxia F0398]
gi|355378146|gb|EHG25337.1| hypothetical protein HMPREF9432_00717 [Selenomonas noxia F0398]
Length = 785
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 209/793 (26%), Positives = 380/793 (47%), Gaps = 125/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ES +VLE++K+ ++++A ++ G+E + S + Y +RL ET A+++Q+
Sbjct: 4 ESFKVLEYEKIKSWLAAYASSAGGKELCRNIVPSGD--YDAVMRLHQETAEALQVQQIQP 61
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
G+ DL ++ +++ S L +E +V++ + ++ R DL
Sbjct: 62 PPFG--GIYDLRVI---LKKALMGSVLELDELRSVMSTMSSMRNMKYFFR-------DLM 109
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
L M + V + + + +DE G+ +D ASP L++ ++Q + ++ +
Sbjct: 110 QDVPLLKSMARPIEVLGIVERHLKDTIDEHGNFRDDASPELRRITCELQTAQTRVKDRLS 169
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
++ + N+ F E V+ R I + + F G++ S+SG +EPL+ V L
Sbjct: 170 AILHDAVNQKYFQEAIVTVRDERYVIPVKQEYRNYFPGVIHDQSASGATLFVEPLATVEL 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ ++Q + + + +L LT ++ + D + + ++D V AR GG
Sbjct: 230 NNMVRQLGIAREQEIQRILQKLTAEIAKNADILADNCKILAEIDFVFAR-------GG-- 280
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
L ++M+ + P+ + R+ + L +A HPLL
Sbjct: 281 ----LAREME---AYPPILN------RDGVVRLKRARHPLL------------------- 308
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
+KD VPIDI + +L+ITGPNTG
Sbjct: 309 -----------------QKDK----------------VVPIDIELGSAFSILLITGPNTG 335
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ +KT+GL ++A+SG + ++ + +P + +++ADIGDEQS+ QSLSTFS H + I
Sbjct: 336 GKTVSMKTLGLLALLAQSGCFLPAAPDSTLPVYRNIYADIGDEQSIEQSLSTFSAHTRNI 395
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
II ++ L+LLDE+GAGT+P EG AL S++E F + + +ATTH+ LKT Y
Sbjct: 396 VRIIEKAEPGDLILLDEVGAGTDPDEGAALARSIIEHF-RTCHISVLATTHYAVLKTYAY 454
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ +NA +EFD L+PTY++L G+PG S+A +I+ +LGL +VQ A
Sbjct: 455 TQPGIQNASVEFDLNTLRPTYRLLMGIPGASNAFSISRQLGLSQDIVQRAELYINEEHMH 514
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++VI +E+ K + E + L+ + +L R + AS++ + QK
Sbjct: 515 FDKVINALEQKKKDY-----EIKLDLLYKKEKEMTMLEARLR----EASEKIARSQK--- 562
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
+++HK+ ++ AR + A++ S + V + Q ++ +
Sbjct: 563 ------NILHKAREEANNIIRDAR----RTAEETIKSLKEQFDDHGVKERQKMIQDARNR 612
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
V+ ++S+ K ++ S E+ N GD+V++ S ++GTV+ V +E++
Sbjct: 613 LNEAYVQGYVPQNNSIGKTVRPS------EIRN-GDIVYIQSLAQEGTVLSVR--DKELI 663
Query: 827 VQVGNMKWIMKFT 839
VQVG ++ +K
Sbjct: 664 VQVGGLRTTIKMN 676
>gi|347525834|ref|YP_004832582.1| DNA mismatch repair protein [Lactobacillus ruminis ATCC 27782]
gi|345284793|gb|AEN78646.1| DNA mismatch repair protein [Lactobacillus ruminis ATCC 27782]
Length = 786
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 228/803 (28%), Positives = 377/803 (46%), Gaps = 139/803 (17%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
L+ LE+DK+ + + ++A T +G+ + + Y+ + LDET K G+
Sbjct: 5 GLKTLEYDKVKNMLLAYATTEMGKNMVFE--LAPSSDYEWIEQALDET-------KDGAD 55
Query: 113 SLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
L L G L VK ++ + + L E + +L+ + + R ++ +
Sbjct: 56 ILRLKGGIPIPKLESVKKHLKRLDIGASLSAKELAEIGRVLRVTNETKRFFRDLEADEIE 115
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L + + V+R L+ SI + DG + D AS L R Q+ E ++
Sbjct: 116 LNHLYDEADMLETLPDVSRRLLMSI----ENDGHVTDEASSLLASLRRQITTTEGEIRNR 171
Query: 229 MDMLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
+ +R ++++ L + +I R I A+ + +F G++ SSSG IEP V
Sbjct: 172 LGNFVRGKSSKYLSDSLVTIRNERYVIPVKAEYKNAFGGIVHDQSSSGQTLFIEPKEIVE 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ L+Q + + + + +L L+E + +EIE + + D +NA+A
Sbjct: 232 LNNRLRQQQIAEKEEIKRILEELSELIAPYTEEIENNAKILGKFDFINAKAK-------- 283
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
L D+K + +P+ S RE +YL + +HPL
Sbjct: 284 -----LAHDLKAT---QPLIS------RENDVYLRQVWHPL------------------- 310
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
L+ V D+ I + + +VITGPNT
Sbjct: 311 ---------------------------------LDSKKAVRNDVAIGKDYQAIVITGPNT 337
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKTI LKT+GL MM +SGL I + E +++ FD +FADIGDEQS+ QSLSTFS H+
Sbjct: 338 GGKTITLKTLGLVSMMGQSGLFIPAFENSRIGVFDDIFADIGDEQSIEQSLSTFSSHMTN 397
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I+ +SLVL DE+GAGT+P EG AL +++L+A GS + +ATTH+ ELK
Sbjct: 398 TVEILKSIDERSLVLFDELGAGTDPQEGAALAIAILDAVGAKGSYV-VATTHYPELKAYG 456
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
Y NA MEFD LKPTY +L G+PGRS+A +I++RLGL +V+ AR+L S
Sbjct: 457 YERPQTINASMEFDAETLKPTYHLLIGIPGRSNAFDISKRLGLDDEIVEAARKLTDQDSQ 516
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL-------LRTRRKILEHCASQRF 698
++NE+I ++ + + + E + +L S LH +L +R R ++E+
Sbjct: 517 DLNEMIADLVQKRHEAEEEKARFKKYLDESEKLHADLEKGYGTYVRERDNMIENAK---- 572
Query: 699 RKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQH 758
RK +I + A K ++++ S +HK Q + SL + +N+
Sbjct: 573 RKANEIIENA-------QKKSEEII-------SELHKMKQ-----SGASL----IKENEL 609
Query: 759 VLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKV 818
+ ++ ++ +E P ++K K R K+ + + D V V ++G++G + K
Sbjct: 610 IDA----RSRLNDLEQPI-----MLKKNKVLQRAKKQQEFHENDDVLVKTYGQRGVLTK- 659
Query: 819 EPSKEEIVVQVGNMKWIMKFTDI 841
K E VQ+G +K + D+
Sbjct: 660 RLGKHEWEVQLGILKMKIDEDDL 682
>gi|116629097|ref|YP_814269.1| mismatch repair ATPase [Lactobacillus gasseri ATCC 33323]
gi|420147607|ref|ZP_14654882.1| MutS2 protein [Lactobacillus gasseri CECT 5714]
gi|122273905|sp|Q045P1.1|MUTS2_LACGA RecName: Full=MutS2 protein
gi|116094679|gb|ABJ59831.1| Mismatch repair ATPase (MutS family) [Lactobacillus gasseri ATCC
33323]
gi|398400754|gb|EJN54285.1| MutS2 protein [Lactobacillus gasseri CECT 5714]
Length = 791
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 220/807 (27%), Positives = 380/807 (47%), Gaps = 135/807 (16%)
Query: 43 DDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNA 102
+D S+++ + LE++++ +S A T+ + L + S + DE
Sbjct: 2 EDMNSKIIEK----LEYNRIIRQLSDLAITAPAKAQALKLMPSSD---------FDEVKK 48
Query: 103 AIEMQKHGSCSLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS 158
+I+ + S L + G D V+ +++ ++ + L E + +L ++ +
Sbjct: 49 SIDQTRVLSNILRVKGPMPITDFKDVRPSLKRLKVKANLNGEELGNIFLVLSLAK--DVG 106
Query: 159 LRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQV 218
A+ E+ ++ R P+ + + L V L K + Q ++ DG++KD+AS L Q R +
Sbjct: 107 QFASDLEEREIDTR--PIEKYLKNLAVPEDLFKKLNQAIEYDGTVKDTASSKLMQLRHDI 164
Query: 219 QMLERKLYQLMDMLIRNENNESLFLEVSSIH-GRLCIRTGAD-QLSFKGLLLS-SSSGIG 275
Q E + M+ I ++ + L + +I GR + + + F G++ S+SG
Sbjct: 165 QSNETDIKNHMNDYISGKHTQYLSENIVTIRDGRYVLPVKQEYKNKFGGVVHDQSASGQT 224
Query: 276 SVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNAR 335
+EP + + LN+ Q A + +L+ L+E EI + QLD ++A+
Sbjct: 225 LFVEPQAVLVLNNRQQNLLAQERQEIHRILIELSELAGAYQKEINNNALALTQLDFLSAK 284
Query: 336 ATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKT 395
+ + T P L QD I L KA HPL+
Sbjct: 285 SKLAKKMKATEP--VLNQD--------------------HIIKLRKARHPLI-------- 314
Query: 396 QQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKT 455
P ++ VP +I +
Sbjct: 315 ----------------------------------DPKKV----------VPNNIELGTTF 330
Query: 456 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 515
++ITGPNTGGKTI LKT+GL +MA++GL I + E +++ F+ ++ADIGDEQS+ QS
Sbjct: 331 DTMLITGPNTGGKTITLKTLGLLQLMAQAGLFITAEEGSQLTVFNEIYADIGDEQSIEQS 390
Query: 516 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 575
LSTFS H+ QI I++ T LVL+DE+GAGT+P EG +L +++L+ ++ + + I T
Sbjct: 391 LSTFSSHMDQIIKIMNNVTEDDLVLIDELGAGTDPEEGASLAIAILDDLRQTQAKIAI-T 449
Query: 576 THHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQN 635
TH+ ELK Y+ NA MEFD KL PTY++ G+PG+S+A IA +LG+ VV
Sbjct: 450 THYPELKLYGYNRKRTTNASMEFDLKKLAPTYRLRIGIPGQSNAFAIAHQLGMNEAVVDK 509
Query: 636 ARQLYGAASAEINEVIIEMERF--KTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHC 693
AR L ++IN++I ER +T+ E +HE L +N+ +++ T ++ L++
Sbjct: 510 ARDLMNDEDSDINKMI---ERLTEQTKAAEQLHET-----LKQNVDQSI--TLKRQLQNG 559
Query: 694 ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKV 753
++VQK + + K+ + L QA +++ +Q R A + KV
Sbjct: 560 LDWYNQQVQKQLEKSQ------EKADEMLAKKRKQAEKIINDLEEQRR--AGGQVRTNKV 611
Query: 754 GKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKG 813
+ + L + E+ A++ V++ R K+ +VGD V V S+G++G
Sbjct: 612 IEAKGALNKL-------ERENQNLANNKVLQ------REKKRHDVSVGDNVKVLSYGQQG 658
Query: 814 TVIKVEPSKEEIVVQVGNMKWIMKFTD 840
+ K + + E VQ+G +K +K TD
Sbjct: 659 VITK-KLGEHEFEVQIGILK--VKVTD 682
>gi|225181647|ref|ZP_03735087.1| MutS2 family protein [Dethiobacter alkaliphilus AHT 1]
gi|225167628|gb|EEG76439.1| MutS2 family protein [Dethiobacter alkaliphilus AHT 1]
Length = 775
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 141/404 (34%), Positives = 219/404 (54%), Gaps = 47/404 (11%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI + + R LVITGPNTGGKT+ LKTVGL +MA+SGLH+ + E +++ F +FA
Sbjct: 311 VPISLEMGENLRTLVITGPNTGGKTVTLKTVGLFSIMAQSGLHVPAEEGSELAVFPRIFA 370
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQ ++QSLSTFSGHLK I +I+ Q SLVLLDE+GAGT+P EG L M++LE
Sbjct: 371 DIGDEQDITQSLSTFSGHLKNIIDILGQLVPGSLVLLDEVGAGTDPTEGAGLAMAILEYL 430
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G++ T+ TTH+ +LKT Y ENA +EFD L+PTY++L GVPG S+A IA+
Sbjct: 431 HNFGAV-TVGTTHYSQLKTFAYVTQGMENASVEFDVATLRPTYQLLVGVPGVSNAFAIAQ 489
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEM-------ERFKTQFLEHVHEARHFLMLSRN 677
RLGL +++ ++ + EV+ ++ E Q + +++ L+ +
Sbjct: 490 RLGLDQDIIRRGKEFLSQEETRLEEVVADLVADRQRIEVVSRQVEDERQQSKALLLQIQQ 549
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
++L R + +ILE R Q+ +A + K +++ +AS + V A
Sbjct: 550 EKEDLARRKSEILEKAR----RDAQETVISAKREAQQLLKQLRKMAAAASPLQEEVENAA 605
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL 797
++LR L ++F + V + ++ + +
Sbjct: 606 EKLRK-----------------LDTDFTELQVSQSTSKPLSAEELTE------------- 635
Query: 798 PNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
G V+V+S G++GTV+K + +I VQVG M+ ++ D+
Sbjct: 636 ---GSEVYVNSLGQRGTVVKA--GQSQIQVQVGMMRITVEPADL 674
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 130/300 (43%), Gaps = 18/300 (6%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
+R+LE+ + ++ + T +GRE L + + + + R ET A+ + K
Sbjct: 5 IRLLEFAAIRQALMDYTVTPMGRE--LAEDLTPTSQLELARRWQAETTEAVSLIKRNQIG 62
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
L+ + ++ + R S L + V LLQ L+ KE +
Sbjct: 63 LE----RVPDLRRILDVAARGSMLGEEQLFGVWRLLQAV----TKLKGFFKEKEGYPV-- 112
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
LT + Q+ +L + + +DE+G ++D AS L + R + E+ L + D +
Sbjct: 113 --LTGLTRQMDALPNLREELKNTLDEEGRLRDQASAELLRLRRSINGGEQDLRERFDRFV 170
Query: 234 RNENNESLFLE-VSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
RN N E + ++ G RL + + S G++ S+SG IEPL AV N+
Sbjct: 171 RNPGNHKALQENLVTVRGDRLVVPIRQEYRSQVPGVVHDQSASGATLFIEPLWAVEANNR 230
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L R K E +L+ L++ + + + L +LD + A+A SL+ + P +
Sbjct: 231 LTVLRREEEKERERILVRLSQWAGGEKETLVTSLTLYAELDFIIAKARLSLAQKASEPKL 290
>gi|392957411|ref|ZP_10322935.1| recombination and DNA strand exchange inhibitor protein [Bacillus
macauensis ZFHKF-1]
gi|391876818|gb|EIT85414.1| recombination and DNA strand exchange inhibitor protein [Bacillus
macauensis ZFHKF-1]
Length = 787
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 221/817 (27%), Positives = 383/817 (46%), Gaps = 169/817 (20%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
LRVLE+ K+ V ++A +SLG++ + + + + + R D+T+ +++ + G
Sbjct: 6 LRVLEFTKIVEQVKNYASSSLGKQ--VAEGLKPSTDFAEVKRWQDDTDEGVKVLRLKGQA 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
L IR++R AS R A + + F+E L S A + R
Sbjct: 64 PL-----------GGIRDIR-ASVKR-----AAIGGMLFAEELVDS--ATTIHGGRRFKR 104
Query: 173 FMP-----------LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQML 221
F+ L + ++ + L +I +D++G + DSASP L+ RGQ++
Sbjct: 105 FVEGMVEDGIELPLLAARVEEIDPLQELEAAIKACIDDNGHVMDSASPELRTIRGQLRTF 164
Query: 222 ERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSV 277
E ++ + ++ ++R+ + + + + ++ + R + + + +F G++ SSSG
Sbjct: 165 EARVREKLESMVRSSSYQKMLSDTIITIRNDRFVLPVKQEYRANFGGMVHDQSSSGATLF 224
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGII---QLDVVNA 334
IEP + + +N++L++A+A T+ E +L L+ V + E +L+ + Q+D + A
Sbjct: 225 IEPQAIITINNQLKEAKAKETREIEKILRELS---GVVGEHAEPLLHNVAVLAQIDFIFA 281
Query: 335 RATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQK 394
+A F +++K T + + ++ +I KA HPL+
Sbjct: 282 KA-------------FYSRELK-------ATKPIMNDQQSMSII--KARHPLI------- 312
Query: 395 TQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARK 454
D E+ VPID +
Sbjct: 313 ------DAEAV---------------------------------------VPIDATLGGA 327
Query: 455 TRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQ 514
+ L+ITGPNTGGKT+ LKT+GL +MA+SGL I + E +++ F++++ADIGDEQS+ Q
Sbjct: 328 FQSLIITGPNTGGKTVTLKTIGLLSLMAQSGLQIPAEEQSEMTVFETIYADIGDEQSIEQ 387
Query: 515 SLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIA 574
SLSTFS H+ I +I+ +SLVL DE+GAGT+P EG AL +S+L+ G+ + +A
Sbjct: 388 SLSTFSSHMVNIVDILKTVNYKSLVLFDELGAGTDPQEGAALAISILDYVFARGARV-VA 446
Query: 575 TTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQ 634
TTH+ ELK Y+ + NA +EF+ L+PTYK+L GVPGRS+A I+ RLGL ++
Sbjct: 447 TTHYSELKAYAYNREGVMNASVEFNVETLRPTYKLLIGVPGRSNAFEISRRLGLDVRIID 506
Query: 635 NARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCA 694
A+ A +I+ +I +E + + EA + L ++L ++ LE
Sbjct: 507 EAKAQISAEDNKIDNMIRSLEDNQKRAEFEREEAIALRQDAEKLKQDL----QQKLEQLE 562
Query: 695 SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG 754
++R +++ A A + K+A+ + ++LR
Sbjct: 563 AERDGLLEQAERKAEEAVAAAKKTAEDVI--------------KELR------------- 595
Query: 755 KNQHVLTSNFQQTTVDKVEH----------PATASSSVVKDIKQSPRVKRTELPNVGDLV 804
FQQ + EH AT + K + +P+ K + GD V
Sbjct: 596 --------TFQQEAGNVKEHRLIEARKKLDEATPTLRTKKKKQGAPKPKAVDF-EPGDEV 646
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V SFG+KG +I + S +E VQ+G +K + D+
Sbjct: 647 KVLSFGQKGHII-AKVSNQEYSVQIGILKMNVSRNDL 682
>gi|313887962|ref|ZP_07821641.1| recombination and DNA strand exchange inhibitor protein
[Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846128|gb|EFR33510.1| recombination and DNA strand exchange inhibitor protein
[Peptoniphilus harei ACS-146-V-Sch2b]
Length = 791
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 222/794 (27%), Positives = 366/794 (46%), Gaps = 133/794 (16%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQ-KHGSCS 113
+ LE+DK+ + A S+ E + Q+ I+ Y+ L+ETN A+++ G
Sbjct: 10 KTLEFDKVLVELKKLASASITSEY-IDQV-EISTQYEVVKNRLNETNEALKLIIAKGEPQ 67
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDA---D 168
L VD ++S I+ AL LLQ S+ L++S L+ +K+D+ D
Sbjct: 68 L-FGIVD---IRSIIKRTEIGG------ALTAGGLLQVSDFLRVSRGLKTYLKKDSYNSD 117
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSI-MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
++ + ++I L+ ++ L I +++ E+ D++ L+ RG V + +
Sbjct: 118 EEVKLEYIDKLIEDLYTDKRLEDEINSKIISEEEIADDASRELLRIRRGIVAKKDSIKNK 177
Query: 228 LMDMLIRNENNESLFLE---VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLS 282
L +L ++ + FL+ V+ GR + + S KGL+ S SG + IEP++
Sbjct: 178 LNGIL----SSHADFLQDAIVTLRDGRYVVPVKIENKSRVKGLVHDISGSGQTAYIEPMA 233
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
V N++L++ E +L L+E + +EI+ +I+LD + A+A L++
Sbjct: 234 VVEANNDLKELYIKENLEIEKILKELSELVGETSEEIKSNQEKLIELDFIFAKARLGLNY 293
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
P + RE I L KAYHP L
Sbjct: 294 RANMPKL----------------------NREGRINLIKAYHPFL--------------- 316
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
RK+ VPIDI + L++TG
Sbjct: 317 --------DRKI-----------------------------AVPIDINLGIDFTSLIVTG 339
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKT+ +KTVGL +M + GL I + E +++ F+ VFADIGDEQS+ QSLSTFS H
Sbjct: 340 PNTGGKTVSIKTVGLLTLMTQFGLLIPADEASEIAVFEKVFADIGDEQSIEQSLSTFSSH 399
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
+ I I+ T SLVL DE+GAGT+P EG AL S+++ E + I+T+H+ +LK
Sbjct: 400 MVNIVYILKNVTPNSLVLFDELGAGTDPTEGAALARSIMDFMLER-KIRCISTSHYNQLK 458
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642
+ D NA MEFD L PTY++L GVPG+S+A I+ RLGLP ++ A++L +
Sbjct: 459 IYALTTDGVANASMEFDVDSLSPTYRLLIGVPGKSNAFEISRRLGLPDEIIGEAKKLLSS 518
Query: 643 ASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQ 702
+ E +V+ ++ +T+ E+ E + LE + K++
Sbjct: 519 ENIEFEDVLQSIDEDRTKIREYREEL---------------EREKADLEKENKRLQSKIK 563
Query: 703 KISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTS 762
K+ D + A++L + + ++ + R S S + K+ + Q +L
Sbjct: 564 KLEDQKEKILEKSREEAKRLLLNTKENVDIILSEINEARDKIS-SENSKKIQEAQDLLRE 622
Query: 763 NFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSK 822
+ + DK E T +++ +++IK VGD V +S G TV+++ K
Sbjct: 623 SIKNAR-DKSELEITKAANPIREIK------------VGDKVR-TSLGNLATVLELPDKK 668
Query: 823 EEIVVQVGNMKWIM 836
++VQ G MK M
Sbjct: 669 GNVLVQSGIMKMNM 682
>gi|390456779|ref|ZP_10242307.1| MutS2 protein [Paenibacillus peoriae KCTC 3763]
Length = 788
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 162/411 (39%), Positives = 219/411 (53%), Gaps = 52/411 (12%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L VPID+ + +++TGPNTGGKT+ LKT+GL +MA SGL + + +++ FD
Sbjct: 313 LEQVVPIDVELGNSYTSIIVTGPNTGGKTVTLKTIGLLSLMAMSGLFVPVEDESQLCVFD 372
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+++ADIGDEQS+ Q+LSTFS H+ I +I+ T +SLVLLDE+GAGT+P EG+AL +S+
Sbjct: 373 AIYADIGDEQSIEQNLSTFSSHMTNIISILKNMTPKSLVLLDEVGAGTDPAEGSALAVSI 432
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE G + +ATTH+ ELK Y NA MEFD L PTY++L GVPGRS+A
Sbjct: 433 LEHMHAMGCRM-VATTHYSELKAYAYERKGIINASMEFDVATLSPTYRLLVGVPGRSNAF 491
Query: 621 NIAERLGLPGIVVQNARQ---------LYGAASAEINEVIIEMERFKTQFLEHVHEARHF 671
IAERLGLP ++ AR + AS E N + E ER K + L EA
Sbjct: 492 AIAERLGLPSRILDYARGEVTEEDQRVEHMIASLEQNRLTAEQEREKAEQLRTEMEA--- 548
Query: 672 LMLSRNLHKNLLRTRRKI-LEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
LR+R + L+ SQR R ++K D AR LV K AR
Sbjct: 549 -----------LRSRHQTELDKLESQRDRMLEKAEDE---ARVLVDK-----------AR 583
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
S K LR A + K +H L + ++ +D+ E P + VK
Sbjct: 584 SEAEKIISDLRKLAQEEGASVK----EHKLIAARKE--LDEAE-PKQRKKNTVKRA---- 632
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
RT GD V V S KKG V+++ SK E VVQ+G MK + D+
Sbjct: 633 -ATRTRSIMAGDEVSVHSLNKKGHVVELSGSK-EAVVQLGIMKMKVSLDDL 681
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 148/302 (49%), Gaps = 22/302 (7%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHGSC 112
+ LE+ K+ + +S +A+T+ G++ L S + + + L+ DE AA ++ G
Sbjct: 6 FKTLEYQKILNKLSHYAQTTTGQQTALRLQPSDDLEHIKKLLKGTDEAYAADRLK--GVP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
S + VD++ A++ R L P E L + +Q + +Q+ + + +E+
Sbjct: 64 SFNGV-VDIT---PAVKRARIGGTLSPQELLGIRTTVQAARRIQVCVASLHEEN------ 113
Query: 173 FMPLTQMIM---QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
P+ ++ QL RSL SI +DE+ + DSAS L Q R +++ E ++ + +
Sbjct: 114 --PVETLLFWSEQLSEQRSLENSIKGCIDENAEVLDSASTELSQIRRELRSGEVRIREKL 171
Query: 230 DMLIRNEN-NESLFLEVSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVP 285
D +IR+ ++ L ++ +I G R I A+ S+ G ++ SG G+ IEP S V
Sbjct: 172 DSMIRSSTVSKMLQDQLITIRGDRFVIPVKAEYRSYFGGIVHDQSGSGATLFIEPESIVA 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
+N++L++ R + E +L LT + D + ++ + LD + A+A + T
Sbjct: 232 MNNKLRETRLREEREIEVILQKLTALVAEQADMLLYDVDILGNLDFIFAKARLAREMKAT 291
Query: 346 SP 347
P
Sbjct: 292 LP 293
>gi|238853840|ref|ZP_04644205.1| mismatch repair ATPase [Lactobacillus gasseri 202-4]
gi|238833535|gb|EEQ25807.1| mismatch repair ATPase [Lactobacillus gasseri 202-4]
Length = 788
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 218/793 (27%), Positives = 373/793 (47%), Gaps = 131/793 (16%)
Query: 57 LEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDL 116
LE++++ +S A T+ + L + S + DE +I+ + S L +
Sbjct: 9 LEYNRIIRQLSDLAITAPAKAQALKLMPSSD---------FDEVKKSIDQTRVLSNILRV 59
Query: 117 TG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
G D V+ +++ ++ + L E + +L ++ + A+ E+ ++ R
Sbjct: 60 KGPMPITDFKDVRPSLKRLKVKANLNGEELGNIFLVLSLAK--DVGQFASDLEEREIDTR 117
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
P+ + + L V L K + Q ++ DG++KD+AS L Q R +Q E + M+
Sbjct: 118 --PIEKYLKNLAVPEDLFKKLNQAIEYDGTVKDTASSKLMQLRHDIQSNETDIKNHMNDY 175
Query: 233 IRNENNESLFLEVSSIH-GRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
I ++ + L + +I GR + + + F G++ S+SG +EP + + LN+
Sbjct: 176 ISGKHTQYLSENIVTIRDGRYVLPVKQEYKNKFGGVVHDQSASGQTLFVEPQAVLVLNNR 235
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
Q A + +L+ L+E EI + QLD ++A++ + T P
Sbjct: 236 QQNLLAQERQEIHRILIELSELAGAYQKEINNNALALTQLDFLSAKSKLAKKMKATEP-- 293
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTEL 409
L QD I L KA HPL+
Sbjct: 294 VLNQD--------------------HIIKLRKARHPLI---------------------- 311
Query: 410 RRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKT 469
P ++ VP +I + ++ITGPNTGGKT
Sbjct: 312 --------------------DPKKV----------VPNNIELGTTFDTMLITGPNTGGKT 341
Query: 470 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 529
I LKT+GL +MA++GL I + E +++ F+ ++ADIGDEQS+ QSLSTFS H+ QI I
Sbjct: 342 ITLKTLGLLQLMAQAGLFITAEEGSQLTVFNEIYADIGDEQSIEQSLSTFSSHMDQIIKI 401
Query: 530 ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589
++ T LVL+DE+GAGT+P EG +L +++L+ ++ + + I TTH+ ELK Y+
Sbjct: 402 MNNVTEDDLVLIDELGAGTDPEEGASLAIAILDDLRQTQAKIAI-TTHYPELKLYGYNRK 460
Query: 590 FFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINE 649
NA MEFD KL PTY++ G+PG+S+A IA +LG+ VV AR L ++IN+
Sbjct: 461 RTTNASMEFDLKKLAPTYRLRIGIPGQSNAFAIAHQLGMNEAVVDKARDLMNDEDSDINK 520
Query: 650 VIIEMERF--KTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDA 707
+I ER +T+ E +HE L +N+ +++ T ++ L++ ++VQK +
Sbjct: 521 MI---ERLTEQTKAAEQLHET-----LKQNVDQSI--TLKRQLQNGLDWYNQQVQKQLEK 570
Query: 708 AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
+ K+ + L QA +++ +Q R A + KV + + L
Sbjct: 571 SQ------EKADEMLAKKRKQAEKIINDLEEQRR--AGGQVRTNKVIEAKGALNKL---- 618
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
+ E+ A++ V++ R K+ +VGD V V S+G++G + K + + E V
Sbjct: 619 ---ERENQNLANNKVLQ------REKKRHDVSVGDNVKVLSYGQQGVITK-KLGEHEFEV 668
Query: 828 QVGNMKWIMKFTD 840
Q+G +K +K TD
Sbjct: 669 QIGILK--VKVTD 679
>gi|255557150|ref|XP_002519606.1| conserved hypothetical protein [Ricinus communis]
gi|223541196|gb|EEF42751.1| conserved hypothetical protein [Ricinus communis]
Length = 245
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 108/185 (58%), Positives = 145/185 (78%)
Query: 45 KKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAI 104
K+ V Y SL++LEWDKLC SVSSFA TSLGR+A QLWS+N+ Y++ L LL ETN+A+
Sbjct: 49 KEGGVHYNSLKLLEWDKLCDSVSSFAGTSLGRQAIKVQLWSLNRNYEECLMLLRETNSAV 108
Query: 105 EMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIK 164
EM KHGSC LD +G+DL LVKS I RRA + NEA+A+ +L++++ LQL+L+AAI
Sbjct: 109 EMHKHGSCRLDFSGIDLLLVKSGIEHARRALLVSANEAIAIATMLEYADILQLNLQAAIN 168
Query: 165 EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
EDA Y RF+PL+Q+IM+L +NR L++ I QV+DEDGS+KDSAS ALK+SR QVQ+LE+K
Sbjct: 169 EDAGWYNRFVPLSQLIMELVINRPLVRMIHQVIDEDGSVKDSASSALKRSRDQVQILEKK 228
Query: 225 LYQLM 229
++ +
Sbjct: 229 DFKFL 233
>gi|292670925|ref|ZP_06604351.1| DNA mismatch repair protein MutS [Selenomonas noxia ATCC 43541]
gi|292647546|gb|EFF65518.1| DNA mismatch repair protein MutS [Selenomonas noxia ATCC 43541]
Length = 785
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 209/793 (26%), Positives = 380/793 (47%), Gaps = 125/793 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
ES +VLE++K+ ++++A ++ G+E + S + Y +RL ET A+++Q+
Sbjct: 4 ESFKVLEYEKIKSWLAAYASSAGGKELCRNIVPSGD--YDAVMRLHQETAEALQVQQIQP 61
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
G+ DL ++ +++ S L +E +V++ + ++ R DL
Sbjct: 62 PPFG--GIYDLRVI---LKKALMGSVLELDELRSVMSTMSSMRNMKYFFR-------DLM 109
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
L M + V + + + +DE G+ +D ASP L++ ++Q + ++ +
Sbjct: 110 QDVPLLKSMARPIEVLGIVERHLKDTIDEHGNFRDDASPELRRITCELQTAQTRVKDRLS 169
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
++ + N+ F E V+ R I + + F G++ S+SG +EPL+ V L
Sbjct: 170 AILHDAVNQKYFQEAIVTVRDERYVIPVKQEYRNYFPGVIHDQSTSGATLFVEPLATVEL 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ ++Q + + + +L LT ++ + D + + ++D V AR GG
Sbjct: 230 NNMVRQLGIAREQEIQRILQKLTAEIAKNADILADNCKILAEIDFVFAR-------GG-- 280
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
L ++M+ + P+ + R+ + L +A HPL LQ+ K
Sbjct: 281 ----LAREME---AYPPILN------RDGVVRLKRARHPL-LQKDK-------------- 312
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
VPIDI + +L+ITGPNTG
Sbjct: 313 -------------------------------------VVPIDIELGSAFSILLITGPNTG 335
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ +KT+GL ++A+SG + ++ + +P + +++ADIGDEQS+ QSLSTFS H + I
Sbjct: 336 GKTVSMKTLGLLALLAQSGCFLPAAPDSTLPVYRNIYADIGDEQSIEQSLSTFSAHTRNI 395
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
II ++ L+LLDE+GAGT+P EG AL S++E F + + +ATTH+ LKT Y
Sbjct: 396 VRIIEKAEPGDLILLDEVGAGTDPDEGAALARSIIEHF-RTCHISVLATTHYAVLKTYAY 454
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ +NA +EFD L+PTY++L G+PG S+A +I+ +LGL +VQ A
Sbjct: 455 TQPGIQNASVEFDLNTLRPTYRLLMGIPGASNAFSISRQLGLSQDIVQRAELYINEEHMH 514
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
++VI +E+ K + E + L+ + +L R + AS++ + QK
Sbjct: 515 FDKVINALEQKKKDY-----EIKLDLLYKKEKEMTMLEARLR----EASEKIARSQK--- 562
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
+++HK+ ++ AR + A++ S + V + Q ++ +
Sbjct: 563 ------NILHKAREEANNIIRDAR----RTAEETIKSLKEQFDDHGVKERQKMIQDARNR 612
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
V+ ++S+ K ++ S E+ N GD+V++ S ++GTV+ V +E++
Sbjct: 613 LNEAYVQGYVPQNNSIGKTVRPS------EIRN-GDIVYIQSLAQEGTVLSVR--DKELI 663
Query: 827 VQVGNMKWIMKFT 839
VQVG ++ +K
Sbjct: 664 VQVGGLRTTIKMN 676
>gi|423090112|ref|ZP_17078447.1| MutS2 family protein [Clostridium difficile 70-100-2010]
gi|357557023|gb|EHJ38589.1| MutS2 family protein [Clostridium difficile 70-100-2010]
Length = 792
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 222/392 (56%), Gaps = 31/392 (7%)
Query: 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD 508
I++ R LVITGPNTGGKT+ +KTVGL +M +SGLHI + + + +D+VFADIGD
Sbjct: 322 IYLGRDFHTLVITGPNTGGKTVTIKTVGLFALMTQSGLHIPADYGSSMCVYDNVFADIGD 381
Query: 509 EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
EQS+ QSLSTFS H+ I +I+ T+ SLV+ DE+GAGT+P+EG AL +++LE G
Sbjct: 382 EQSIEQSLSTFSSHMTNIVSILQNVTADSLVIFDELGAGTDPVEGAALAIAVLEDINSVG 441
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+ IATTH+ ELK + ENA +EFD L PTYK+L GVPG+S+A I+ +LGL
Sbjct: 442 A-KCIATTHYSELKNYALTKSGVENAAVEFDIETLSPTYKLLIGVPGKSNAFEISRKLGL 500
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK 688
V+ A++ + + +V+ +E+ + + +E EA L + K + K
Sbjct: 501 SDYVISRAKEYINTENIALEDVLQNVEKNRIKAVEDREEAER---LKEEIEKLKVEYDEK 557
Query: 689 ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL 748
LE SQR + ++K A + A S++ ++ +++ + RSL +RA + + + L
Sbjct: 558 -LEKLVSQRDKMIEK---AKSEAFSIIRQAKEEVDIIIKELRSLEQERASKEKNRKIEEL 613
Query: 749 HCTKVGKNQHVLTSNFQ--QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHV 806
+ LTS+ Q TV + P S+ +KD+K G+ V V
Sbjct: 614 --------RKELTSSMGSLQPTVKSMIVPK-VSNKEIKDLKP------------GEEVKV 652
Query: 807 SSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKF 838
+ + G+V+ V+ ++E VVQ+G MK + F
Sbjct: 653 ITLNQNGSVVSVDKKRKEAVVQIGIMKMTLPF 684
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 160/348 (45%), Gaps = 29/348 (8%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSI--NQTYQDSLRLLDETNAAIEMQ-K 108
+SLRVLE++K+ + A +SLG L + ++ N + + +L+ET+ A + K
Sbjct: 4 KSLRVLEYNKIIDLLKKKASSSLG----LKYIENLVPNTDFVEVKSMLEETSEAQSIIIK 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
GS L+ + ++ ++ + L P + + L+ + L+ SL ++ +ED +
Sbjct: 60 RGSVGLE----GIHDIEDKVKRAYIGASLDPGSLIMIADTLRVARRLRNSLSSSDEEDFN 115
Query: 169 LYIRFMPLTQMIMQ-LFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
P+ Q + L+V + + I + + I D+AS L+ R ++ + +
Sbjct: 116 -----YPIIQSLSNSLYVYKDIEDQIYNAIISEVEISDNASSTLRDIRRRIAQKNQSIRS 170
Query: 228 LMDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ +I + + + + S+ G R + ++ S G++ SSSG IEP++
Sbjct: 171 KLNSIISSTTYQKYLQDAIISLRGDRFVVPVKSEYRSQVAGIVHDQSSSGATLFIEPMTI 230
Query: 284 VPLNDELQQARASVTKAEEDV---LLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
V +N+EL+Q + + E + L A+ ++ DL +++L +LD ++ S+
Sbjct: 231 VEMNNELRQLKLGEQEEIERILSELSAMVGEVSEDLISNQEILG---RLDFAFSKGKLSI 287
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL 388
G P + + + P+ K TIYL + +H L++
Sbjct: 288 QMRGIEPTLNEDKYLNIKNGRHPLLDKKKVVAN--TIYLGRDFHTLVI 333
>gi|126698288|ref|YP_001087185.1| DNA mismatch repair protein [Clostridium difficile 630]
gi|123363473|sp|Q189Q3.1|MUTS2_CLOD6 RecName: Full=MutS2 protein
gi|115249725|emb|CAJ67542.1| DNA mismatch repair protein [Clostridium difficile 630]
Length = 792
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 222/392 (56%), Gaps = 31/392 (7%)
Query: 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD 508
I++ R LVITGPNTGGKT+ +KTVGL +M +SGLHI + + + +D+VFADIGD
Sbjct: 322 IYLGRDFHTLVITGPNTGGKTVTIKTVGLFALMTQSGLHIPADYGSSMCVYDNVFADIGD 381
Query: 509 EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
EQS+ QSLSTFS H+ I +I+ T+ SLV+ DE+GAGT+P+EG AL +++LE G
Sbjct: 382 EQSIEQSLSTFSSHMTNIVSILQNVTADSLVIFDELGAGTDPVEGAALAIAVLEDINSVG 441
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+ IATTH+ ELK + ENA +EFD L PTYK+L GVPG+S+A I+ +LGL
Sbjct: 442 A-KCIATTHYSELKNYALTKSGVENAAVEFDIETLSPTYKLLIGVPGKSNAFEISRKLGL 500
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK 688
V+ A++ + + +V+ +E+ + + +E EA L + K + K
Sbjct: 501 SDYVISRAKEYINTENIALEDVLQNVEKNRIKAVEDREEAER---LKEEIEKLKVEYDEK 557
Query: 689 ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL 748
LE SQR + ++K A + A S++ ++ +++ + RSL +RA + + + L
Sbjct: 558 -LEKLVSQRDKMIEK---AKSEAFSIIRQAKEEVDIIIKELRSLEQERASKEKNRKIEEL 613
Query: 749 HCTKVGKNQHVLTSNFQ--QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHV 806
+ LTS+ Q TV + P S+ +KD+K G+ V V
Sbjct: 614 --------RKELTSSMGSLQPTVKSMIVPK-VSNKEIKDLKP------------GEEVKV 652
Query: 807 SSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKF 838
+ + G+V+ V+ ++E VVQ+G MK + F
Sbjct: 653 ITLNQNGSVVSVDKKRKEAVVQIGIMKMTLPF 684
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 160/348 (45%), Gaps = 29/348 (8%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSI--NQTYQDSLRLLDETNAAIEMQ-K 108
+SLRVLE++K+ + A +SLG L + ++ N + + +L+ET+ A + K
Sbjct: 4 KSLRVLEYNKIIDLLKKKASSSLG----LKYIENLVPNTDFVEVKSMLEETSEAQSIIIK 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
GS L+ + ++ ++ + L P + + L+ + L+ SL ++ +ED +
Sbjct: 60 RGSVGLE----GIHDIEDKVKRAYIGASLDPGSLIMIADTLRVARRLRNSLSSSDEEDFN 115
Query: 169 LYIRFMPLTQMIMQ-LFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
P+ Q + L+V + + I + + I D+AS L+ R ++ + +
Sbjct: 116 -----YPIIQSLSNSLYVYKDIEDQIYNAIISEVEISDNASSILRDIRRRIAQKNQSIRS 170
Query: 228 LMDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ +I + + + + S+ G R + ++ S G++ SSSG IEP++
Sbjct: 171 KLNSIISSTTYQKYLQDAIISLRGDRFVVPVKSEYRSQVAGIVHDQSSSGATLFIEPMTI 230
Query: 284 VPLNDELQQARASVTKAEEDV---LLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
V +N+EL+Q + + E + L A+ ++ DL +++L +LD ++ S+
Sbjct: 231 VEMNNELRQLKLGEQEEIERILSELSAMVGEVSEDLISNQEILG---RLDFAFSKGKLSI 287
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL 388
G P + + + P+ K TIYL + +H L++
Sbjct: 288 QMRGIEPTLNEDKYLNIKNGRHPLLDKKKVVAN--TIYLGRDFHTLVI 333
>gi|258515602|ref|YP_003191824.1| MutS2 family protein [Desulfotomaculum acetoxidans DSM 771]
gi|257779307|gb|ACV63201.1| MutS2 family protein [Desulfotomaculum acetoxidans DSM 771]
Length = 786
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 221/397 (55%), Gaps = 31/397 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+ + + ++ L+ITGPNTGGKT+ LKT+GL V+MA+SGLHI + ++ F+ VFA
Sbjct: 315 VPVSVHLGKEFDSLIITGPNTGGKTVTLKTIGLLVLMAQSGLHIPAESSSETGIFEQVFA 374
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I++QS + SLVL+DE+GAGT+P EG AL ++LE
Sbjct: 375 DIGDEQSIEQSLSTFSSHMSNIVSILNQSGAGSLVLMDELGAGTDPTEGAALAQAILEKL 434
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
E + + +ATTH+ ELK Y++ ENA +EFD + LKPTY++L G PGRS+A IA
Sbjct: 435 HEQKAKI-VATTHYSELKNFAYAHRRVENASVEFDPISLKPTYRLLIGKPGRSNAFEIAL 493
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL VV AR EI+E+++ +E+ + E E R +L ++ K L+
Sbjct: 494 RLGLEPGVVSRARDFLTTEQIEISELMLRLEKERQAAEE---EKRIAELLRQDAEK--LK 548
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
R LE ++ + ++ A A V + Q+ + + R ++ + +L+ A
Sbjct: 549 ARYTELEQMLREKREDI--LAKAHEEASKTVKNTRQEAEEAIKEFRGMLQENDNRLKEMA 606
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
Q + G + + P + VV PR EL +G+ V
Sbjct: 607 VQEVRNKIKGMQGRLRKA------------PEKSHGGVV------PR----ELL-IGEEV 643
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ + ++G V+ V +E +VQVG MK M D+
Sbjct: 644 FIPNLNQQGYVLNVSTDGKEALVQVGIMKLNMPVKDL 680
Score = 46.2 bits (108), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 137/307 (44%), Gaps = 30/307 (9%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
++L+ LE+DK+ ++ + LGRE L+ + S++ YQ L ET A EM +
Sbjct: 5 KTLKRLEFDKILKKLAGCTGSVLGRERALSLMPSVD--YQTVKIWLSETTEAREMFRLEP 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETL---QLSLRAAIKEDAD 168
+ D+ G + KS IR + A L L + ETL +L+ ++ D
Sbjct: 63 AA-DIGGWH-DIRKSVIRAHQGA-------VLEAKDLSEIGETLAAARLARNYLLERD-- 111
Query: 169 LYIRFMPLTQMIMQLFVNRS-LIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
F PL I + + L + + G I D AS AL Q R ++ + +
Sbjct: 112 ---EFYPLLAGIGSRITSFADLEHRLKNAILPGGEIADRASDALSQIRRRITNNRASVKE 168
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL-----SSSSGIGSVIEP 280
++ +IR+ N + + V+ GR + +L ++G + +S+SG +EP
Sbjct: 169 RLEHIIRSPNYQKYLQDPIVTIREGRYVVPV---KLEYRGQVQGIVHDTSASGATLFVEP 225
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
++ V N+EL++ A+ + +L L+ ++ + + + L + LD V A+A S
Sbjct: 226 MAVVEANNELRRLIAAEKQEIVKILTDLSCRVAQESEPLGVTLEALGHLDFVLAKARLSS 285
Query: 341 SFGGTSP 347
+P
Sbjct: 286 QMDAWAP 292
>gi|352095971|ref|ZP_08956918.1| MutS2 protein [Synechococcus sp. WH 8016]
gi|351677327|gb|EHA60476.1| MutS2 protein [Synechococcus sp. WH 8016]
Length = 805
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 143/338 (42%), Positives = 197/338 (58%), Gaps = 25/338 (7%)
Query: 456 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 515
RV+ ITGPNTGGKT+ LK++GLA +MA++G+ I +PW V ADIGDEQSL QS
Sbjct: 348 RVVAITGPNTGGKTVTLKSIGLAALMARAGMWIPCKGSPSLPWCAQVLADIGDEQSLQQS 407
Query: 516 LSTFSGHLKQIGNI---ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLT 572
LSTFSGH+K+IG+I I+ S +LVLLDE+GAGT+P EGTAL ++LL A + LT
Sbjct: 408 LSTFSGHVKRIGSILQSIASGPSPALVLLDEVGAGTDPSEGTALAIALLRNLANC-ARLT 466
Query: 573 IATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIV 632
IATTH GELK LKYS+ FENA + FD L PTY++LWG+PGRS+A+ IA RLG V
Sbjct: 467 IATTHFGELKALKYSDSRFENASVAFDSDTLSPTYQLLWGIPGRSNALAIATRLGFDSDV 526
Query: 633 VQNARQLYG-AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILE 691
++ ARQL + ++N VI +E + + +A L + LH+ LL+ + +
Sbjct: 527 IEQARQLLKPSGDGDVNAVIRGLEEQRQRQQAAAEDAAALLARTELLHEELLQRWEQQRK 586
Query: 692 HCASQ----RFRKVQKISDAAAIARSLV-------------HKSAQQLCPSASQARSLVH 734
+ A Q R R I D R L+ ++ Q+L S RS+
Sbjct: 587 NSAQQQELGRQRLESSIRDGQKEVRHLIRRLRDQKADGETARRAGQRLRKLESNHRSVPE 646
Query: 735 KRAQ-QLRPSASQSLHCTKVGKNQHVL--TSNFQQTTV 769
+R + RPS + + + K VL + + QQ +V
Sbjct: 647 RRHHPEWRPSVGERIRLLALDKAAEVLEVSDDGQQLSV 684
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 121/297 (40%), Gaps = 22/297 (7%)
Query: 59 WDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC---SLD 115
W +LC S+FA T GR+ L Q D L +IE+ L
Sbjct: 26 WPRLCQHFSTFANTPQGRQHCLK-----GQLPADLETTLTYQARSIELASLDGLLDGGLS 80
Query: 116 LTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFM 174
GV DL +V + + E L+V L + L+ + +D DL
Sbjct: 81 FQGVSDLEMV---LLRCCKGGTASGEELLSVAHTLAAARRLRRQI-----DDPDLRPDCS 132
Query: 175 PLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIR 234
L + + L L + + ++E G + + AS +L++ R Q Q+ ++ + ++R
Sbjct: 133 ALLENVATLP---ELEQRLKFALEEGGRVANRASESLEELRLQWQVARQERRDRLQAVLR 189
Query: 235 NENNESLFLEVSSIHGR--LCIRTGADQLSFKGLLLSSSSGIGSVIEPLSAVPLNDELQQ 292
+ ++ HGR L ++ GA + SSSSG +EP + + L + L
Sbjct: 190 RWTSLLQDAVIAERHGRPVLAVKAGAASQCPGMVHDSSSSGNTVFVEPKTVIGLGNRLAA 249
Query: 293 ARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+ + E VL L+ + D I +++ +++LD+ AR Y G P +
Sbjct: 250 LDGRIREEERRVLAELSAAVAEQNDAIARLMAVLLKLDLALARGRYGQWLGAVPPRL 306
>gi|255099823|ref|ZP_05328800.1| putative DNA mismatch repair protein [Clostridium difficile
QCD-63q42]
gi|255305708|ref|ZP_05349880.1| putative DNA mismatch repair protein [Clostridium difficile ATCC
43255]
Length = 792
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 222/392 (56%), Gaps = 31/392 (7%)
Query: 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD 508
I++ R LVITGPNTGGKT+ +KTVGL +M +SGLHI + + + +D+VFADIGD
Sbjct: 322 IYLGRDFHTLVITGPNTGGKTVTIKTVGLFALMTQSGLHIPADYGSSMCVYDNVFADIGD 381
Query: 509 EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
EQS+ QSLSTFS H+ I +I+ T+ SLV+ DE+GAGT+P+EG AL +++LE G
Sbjct: 382 EQSIEQSLSTFSSHMTNIVSILQNVTADSLVIFDELGAGTDPVEGAALAIAVLEDINSVG 441
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+ IATTH+ ELK + ENA +EFD L PTYK+L GVPG+S+A I+ +LGL
Sbjct: 442 A-KCIATTHYSELKNYALTKPGVENAAVEFDIETLSPTYKLLIGVPGKSNAFEISRKLGL 500
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK 688
V+ A++ + + +V+ +E+ + + +E EA L + K + K
Sbjct: 501 SDYVISRAKEYINTENIALEDVLQNVEKNRIKAVEDREEAER---LKEEIEKLKVEYDEK 557
Query: 689 ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL 748
LE SQR + ++K A + A S++ ++ +++ + RSL +RA + + + L
Sbjct: 558 -LEKLVSQRDKMIEK---AKSEAFSIIRQAKEEVDIIIKELRSLEQERASKEKNRKIEEL 613
Query: 749 HCTKVGKNQHVLTSNFQ--QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHV 806
+ LTS+ Q TV + P S+ +KD+K G+ V V
Sbjct: 614 --------RKELTSSMGSLQPTVKSMIVPK-VSNKEIKDLKP------------GEEVKV 652
Query: 807 SSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKF 838
+ + G+V+ V+ ++E VVQ+G MK + F
Sbjct: 653 ITLNQNGSVVSVDKKRKEAVVQIGIMKMTLPF 684
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 160/348 (45%), Gaps = 29/348 (8%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSI--NQTYQDSLRLLDETNAAIEMQ-K 108
+SLRVLE++K+ + A +SLG L + ++ N + + +L+ET+ A + K
Sbjct: 4 KSLRVLEYNKIIDLLKKKASSSLG----LKYIENLVPNTDFVEVKSMLEETSEAQSIIIK 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
GS L+ + ++ ++ + L P + + L+ + L+ SL ++ +ED +
Sbjct: 60 RGSVGLE----GIHDIEDKVKRAYIGASLDPGSLIMIADTLRVARRLRNSLSSSDEEDFN 115
Query: 169 LYIRFMPLTQMIMQ-LFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
P+ Q + L+V + + I + + I D+AS L+ R ++ + +
Sbjct: 116 -----YPIIQSLSNSLYVYKDIEDQIYNAIISEVEISDNASSTLRDIRRRIAQKNQSIRS 170
Query: 228 LMDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ +I + + + + S+ G R + ++ S G++ SSSG IEP++
Sbjct: 171 KLNSIISSTTYQKYLQDAIISLRGDRFVVPVKSEYRSQVAGIVHDQSSSGATLFIEPMTI 230
Query: 284 VPLNDELQQARASVTKAEEDV---LLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
V +N+EL+Q + + E + L A+ ++ DL +++L +LD ++ S+
Sbjct: 231 VEMNNELRQLKLGEQEEIERILSELSAMVGEVSEDLISNQEILG---RLDFAFSKGKLSI 287
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL 388
G P + + + P+ K TIYL + +H L++
Sbjct: 288 QMRGIEPTLNEDKYLNIKNGRHPLLDKKKVVAN--TIYLGRDFHTLVI 333
>gi|282852135|ref|ZP_06261492.1| putative recombination and DNA strand exchange inhibitor protein
[Lactobacillus gasseri 224-1]
gi|282556699|gb|EFB62304.1| putative recombination and DNA strand exchange inhibitor protein
[Lactobacillus gasseri 224-1]
Length = 652
Score = 229 bits (583), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 197/671 (29%), Positives = 323/671 (48%), Gaps = 114/671 (16%)
Query: 175 PLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIR 234
P+ + + L V L K + Q ++ DG++KD+AS L Q R +Q E + M+ I
Sbjct: 56 PIEKYLKNLAVPEDLFKKLNQAIEYDGTVKDTASSKLMQLRHDIQSNETDIKNHMNDYIS 115
Query: 235 NENNESLFLEVSSIH-GRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQ 291
++ + L + +I GR + + + F G++ S+SG +EP + + LN+ Q
Sbjct: 116 GKHTQYLSENIVTIRDGRYVLPVKQEYKNKFGGVVHDQSASGQTLFVEPQAVLVLNNRQQ 175
Query: 292 QARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFL 351
A + +L+ L+E EI + QLD ++A++ + T P L
Sbjct: 176 NLLAQERQEIHRILIELSELAGAYQKEINNNALALTQLDFLSAKSKLAKKMKATEP--VL 233
Query: 352 PQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRR 411
QD I L KA HPL+
Sbjct: 234 NQD--------------------HIIKLRKARHPLI------------------------ 249
Query: 412 RKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTIC 471
P ++ VP +I + ++ITGPNTGGKTI
Sbjct: 250 ------------------DPKKV----------VPNNIELGTTFDTMLITGPNTGGKTIT 281
Query: 472 LKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS 531
LKT+GL +MA++GL I + E +++ F+ ++ADIGDEQS+ QSLSTFS H+ QI I++
Sbjct: 282 LKTLGLLQLMAQAGLFITAEEGSQLTVFNEIYADIGDEQSIEQSLSTFSSHMDQIIKIMN 341
Query: 532 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591
T LVL+DE+GAGT+P EG +L +++L+ ++ + + I TTH+ ELK Y+
Sbjct: 342 NVTEDDLVLIDELGAGTDPEEGASLAIAILDDLRQTQAKIAI-TTHYPELKLYGYNRKRT 400
Query: 592 ENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI 651
NA MEFD KL PTY++ G+PG+S+A IA +LG+ VV AR L ++IN++I
Sbjct: 401 TNASMEFDLKKLAPTYRLRIGIPGQSNAFAIAHQLGMNEAVVDKARDLMNDEDSDINKMI 460
Query: 652 IEMERF--KTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAA 709
ER +T+ E +HE L +N+ +++ T ++ L++ ++VQK + +
Sbjct: 461 ---ERLTEQTKAAEQLHET-----LKQNVDQSI--TLKRQLQNGLDWYNQQVQKQLEKSQ 510
Query: 710 IARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTV 769
K+ + L QA +++ +Q R A + KV + + L
Sbjct: 511 ------EKADEMLAKKRKQAEKIINDLEEQRR--AGGQVRTNKVIEAKGALNKL------ 556
Query: 770 DKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQV 829
+ E+ A++ V++ R K+ +VGD V V S+G++G + K + + E VQ+
Sbjct: 557 -ERENQNLANNKVLQ------REKKRHDVSVGDNVKVLSYGQQGVITK-KLGEHEFEVQI 608
Query: 830 GNMKWIMKFTD 840
G +K +K TD
Sbjct: 609 GILK--VKVTD 617
>gi|389575981|ref|ZP_10166009.1| MutS2 family protein [Eubacterium cellulosolvens 6]
gi|389311466|gb|EIM56399.1| MutS2 family protein [Eubacterium cellulosolvens 6]
Length = 791
Score = 229 bits (583), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 217/815 (26%), Positives = 380/815 (46%), Gaps = 160/815 (19%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGRE--------ATLTQLWSINQTYQDSL-RLLDETNA 102
++L+ LE+ K+ ++S A + LGR + L+++ ++ + D++ R+L
Sbjct: 4 KALKTLEFHKIIKALSGRATSPLGRMKCEKLLPLSDLSEIRAMQKQTADAVGRIL----- 58
Query: 103 AIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR-- 160
++G+ S + + ++++ + S L E L++ LL+ + R
Sbjct: 59 -----RNGTPSFG----NARPIGASLKRLEVGSALAAGELLSIAGLLENCARAKAFGRHD 109
Query: 161 -AAIKEDA-----DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQS 214
A +ED+ DL PL+ I + ++ ED I D AS L+Q
Sbjct: 110 NADTEEDSLDPIFDLLNPLTPLSTEIRRC------------ILSED-EIADDASSTLRQI 156
Query: 215 RGQVQMLERKLY-QLMDML---IRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLLS 269
R Q+ K++ QL M+ +RN +++ ++ GR C+ A+ S G++
Sbjct: 157 RRQISQNGDKIHSQLQSMINGPLRNALQDAV---ITMRDGRYCVPVKAENRSAVPGMIHD 213
Query: 270 -SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQ 328
SS+G IEP++ V LN+++++ K E +L L+ +++I L + +
Sbjct: 214 QSSTGATLFIEPMAIVKLNNDIRELELKEQKEIEVILATLSASAAEHVEDISYDLQNLAE 273
Query: 329 LDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL 388
LD + AR +L DMK + EPV + E I L KA HPL +
Sbjct: 274 LDFIFARGGLAL-------------DMKAT---EPVFNT------EGRINLRKARHPL-I 310
Query: 389 QQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPID 448
+H+ VPID
Sbjct: 311 DKHR---------------------------------------------------VVPID 319
Query: 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD 508
+ + +L++TGPNTGGKT+ LKTVGL +M ++GLHI + + +++ F V+ADIGD
Sbjct: 320 VHLGDSFDLLIVTGPNTGGKTVSLKTVGLLTLMGQAGLHIPTLDRSELSVFTEVYADIGD 379
Query: 509 EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
EQS+ QSLSTFS H+ I + I ++ SLVL DE+GAGT+P EG AL +++L G
Sbjct: 380 EQSIEQSLSTFSSHMTNIVSFIEKADRNSLVLFDELGAGTDPTEGAALAIAILSHLHRQG 439
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+ T+ATTH+ ELK S D ENA EF+ L+PTY++L GVPG+S+A I+ +LGL
Sbjct: 440 -IRTMATTHYSELKIFALSTDKVENASCEFNIETLQPTYRLLIGVPGKSNAFAISSKLGL 498
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK--NLLRTR 686
P ++ +A+ +V+ +E+ + + +E R + L K L+ R
Sbjct: 499 PDYIIDDAKGQISEQDESFEDVLSSLEQNR---IAQENEQRAIEYRKQQLEKLEKELKNR 555
Query: 687 RKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQ 746
+ LE +Q+ + ++K ++ AR+++ A++ + + R
Sbjct: 556 ERTLE---TQKNKIIEKANEQ---ARTVLQ-----------DAKTYADQVMKDFRKFGKA 598
Query: 747 SLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHV 806
++ ++ + ++ L + E TAS + VK +++ + R + +G V V
Sbjct: 599 GVNSAEMERKRNEL----------RKEMDKTASKAQVKPAERTGKKVRPQDLQLGTAVKV 648
Query: 807 SSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
S KGTV S+ + V++G ++ + +D+
Sbjct: 649 LSLNLKGTVSSKPDSRGNLFVRMGIIRSKVNISDL 683
>gi|373112741|ref|ZP_09526968.1| MutS2 protein [Fusobacterium necrophorum subsp. funduliforme
1_1_36S]
gi|371654881|gb|EHO20242.1| MutS2 protein [Fusobacterium necrophorum subsp. funduliforme
1_1_36S]
Length = 518
Score = 229 bits (583), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 152/452 (33%), Positives = 224/452 (49%), Gaps = 85/452 (18%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + VD + IKD AS L+ R +ML + + + D L + F E V+ G
Sbjct: 133 ISKAVDSEKQIKDEASLDLRDIRIHKKMLAQNIRRKFDELFEEASIAVAFQERIVTERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ + D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVVPVKVD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVT 365
L L+E+++ DE+ K+ I+ LD + A+A + L P I
Sbjct: 250 LRLSEQIRNHQDEMYKIGTMILYLDRLQAKANFGLEEACHVPTI---------------- 293
Query: 366 SKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEK 425
+ + +YL KA HP +
Sbjct: 294 ------QGKEILYLEKARHPFI-------------------------------------- 309
Query: 426 DTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG 485
P E VP+ I + R+L+ITGPNTGGKT+ LKT GL +MA SG
Sbjct: 310 -----PKE---------KVVPLTFEIGKDYRILLITGPNTGGKTVALKTAGLLTLMALSG 355
Query: 486 LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIG 545
+ I +SE++K+ +F VFADIGDEQS+ QSLS+FS H+ + I+ + LVLLDE+G
Sbjct: 356 IPIPASEHSKIGFFQGVFADIGDEQSIEQSLSSFSAHVTNLQEILREVHRNCLVLLDELG 415
Query: 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKP 605
+GT+P EG+A MS+++ E I TTH+ E+K Y+ + E A MEFD L P
Sbjct: 416 SGTDPTEGSAFAMSIIDYLKEK-KCNAIITTHYSEVKAHGYNEEGIETASMEFDTATLSP 474
Query: 606 TYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
TY++L G+PG S+A+ IA+RLG+P ++ A+
Sbjct: 475 TYRLLMGIPGESNALTIAKRLGVPQDIIDKAQ 506
>gi|293509911|ref|ZP_06668620.1| MutS2 protein [Staphylococcus aureus subsp. aureus M809]
gi|291467361|gb|EFF09878.1| MutS2 protein [Staphylococcus aureus subsp. aureus M809]
Length = 782
Score = 229 bits (583), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 222/797 (27%), Positives = 372/797 (46%), Gaps = 126/797 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM-QKHG 110
++L VLE+DK+ V++ + LG E + + N ++ + ++ET+ ++ KH
Sbjct: 4 KTLDVLEFDKIKSLVANETISDLGLEKVNQMMPATN--FETVVFQMEETDEIAQIYNKHR 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
SL +G LS V + I L +E + L+Q + ++ED
Sbjct: 62 LPSL--SG--LSKVSAFIHRADIGGVLNVSELNLIKRLIQVQNQFKTFYNQLVEEDEG-- 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+++ L + QL V L + I + D + D+AS L+ R ++ +++ Q +D
Sbjct: 116 VKYPILDDKMNQLPVLTDLFQQINETCDT-YDLYDNASYELQGIRSKISSTNQRIRQNLD 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+++++ N+ + V+ + R I A+ + F G++ S+SG IEP S V +
Sbjct: 175 RIVKSQANQKKLSDAIVTVRNERNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSVVEM 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+++ + R +E +L LT + D D + + QLD + A+A YS S GT
Sbjct: 235 NNQISRLRHDEAIEKERILTQLTGYVAADKDALLVAEQVMGQLDFLIAKARYSRSIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P IF + E T+YLPKAYHPLL ++ AN
Sbjct: 295 P-IF---------------------KEERTVYLPKAYHPLL-----------NRETVVAN 321
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
T +E + I T G
Sbjct: 322 T-------------------------------IEFMEDIETVIITGPNT-----GGKTVA 345
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
KT+ L ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLSTFS H+ I
Sbjct: 346 LKTLGL-----IIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLSTFSSHMTNI 400
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH+ ELK Y
Sbjct: 401 VEILKNADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTHYPELKAYSY 459
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+ + G E
Sbjct: 460 NREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEKE 519
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK--I 704
INE+I +ER + E + + +H +L + Q+F+ +K I
Sbjct: 520 INEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQFQNYEKSLI 570
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
DA K+ Q++ + +A ++ K +QLR + ++ + L ++
Sbjct: 571 EDAK-------EKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKKKRLDDHY 622
Query: 765 QQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEE 824
+ K IKQ+ + ++ + GD V V S+G+KG V+++ + EE
Sbjct: 623 E-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLEI-VNDEE 664
Query: 825 IVVQVGNMKWIMKFTDI 841
+VQ+G +K + D+
Sbjct: 665 AIVQMGIIKMKLPIEDL 681
>gi|323341502|ref|ZP_08081743.1| DNA mismatch repair protein MutS [Lactobacillus ruminis ATCC 25644]
gi|417974481|ref|ZP_12615299.1| DNA mismatch repair protein [Lactobacillus ruminis ATCC 25644]
gi|323091113|gb|EFZ33744.1| DNA mismatch repair protein MutS [Lactobacillus ruminis ATCC 25644]
gi|346329142|gb|EGX97443.1| DNA mismatch repair protein [Lactobacillus ruminis ATCC 25644]
Length = 786
Score = 229 bits (583), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 195/637 (30%), Positives = 307/637 (48%), Gaps = 95/637 (14%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
L+ LE+DK+ + + ++A T +G+ S + + + + LDET K G+
Sbjct: 5 GLKTLEYDKVKNMLLAYATTEMGKNMVFELAPSSDCEWIE--QALDET-------KDGAD 55
Query: 113 SLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
L L G L VK ++ + + L E +L+ + + R ++ +
Sbjct: 56 ILRLKGGIPIPKLESVKKHLKRLDIGASLSAKELAETGRVLRVTNETKRFFRDLEADEIE 115
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L + + V+R L+ SI + DG + D AS L R Q+ E ++
Sbjct: 116 LNHLYDEADMLETLPDVSRRLLMSI----ENDGHVTDEASSLLASLRRQITTTEGEIRNR 171
Query: 229 MDMLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
+ +R ++++ L + +I R I A+ + +F G++ SSSG IEP V
Sbjct: 172 LGNFVRGKSSKYLSDSLVTIRNERYVIPVKAEYKNAFGGIVHDQSSSGQTLFIEPKEIVE 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ L+Q + + + + +L L+E + +EIE + + D +NA+A
Sbjct: 232 LNNRLRQQQIAEKEEIKRILEELSELIAPYTEEIENNAKILGKFDFINAKAK-------- 283
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
L D+K + +P+ S RE +YL + +HPL
Sbjct: 284 -----LAHDLKAT---QPLIS------RENDVYLRQVWHPL------------------- 310
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
L+ V D+ I + + +VITGPNT
Sbjct: 311 ---------------------------------LDSKKAVRNDVAIGKDYQAIVITGPNT 337
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKTI LKT+GL MM +SGL I + E +++ FD +FADIGDEQS+ QSLSTFS H+
Sbjct: 338 GGKTITLKTLGLVSMMGQSGLFIPAFENSRIGVFDDIFADIGDEQSIEQSLSTFSSHMTN 397
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I+ +SLVL DE+GAGT+P EG AL +++L+A GS + +ATTH+ ELK
Sbjct: 398 TVEILKSIDERSLVLFDELGAGTDPQEGAALAIAILDAVGAKGSYV-VATTHYPELKAYG 456
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
Y NA MEFD LKPTY +L G+PGRS+A +I++RLGL +V+ ARQL S
Sbjct: 457 YERPQTINASMEFDAETLKPTYHLLIGIPGRSNAFDISKRLGLDDAIVEAARQLTDQDSQ 516
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
++NE+I ++ + + + E + +L S LH +L
Sbjct: 517 DLNEMIADLVQKRHEAEEEKARFKKYLDESEKLHADL 553
>gi|241896574|ref|ZP_04783870.1| MutS family DNA mismatch repair protein [Weissella
paramesenteroides ATCC 33313]
gi|241870166|gb|EER73917.1| MutS family DNA mismatch repair protein [Weissella
paramesenteroides ATCC 33313]
Length = 795
Score = 228 bits (582), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 175/527 (33%), Positives = 272/527 (51%), Gaps = 56/527 (10%)
Query: 331 VVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPV-TSKVSSSEREWTIYLPKAYHPLLLQ 389
V+ +ATY FGG I ++L EP +++ RE+T+ + +L++
Sbjct: 198 VLPVKATYRQKFGGV---IHDQSQTGQTLYIEPADVVDMNNRLREYTLKERREEERVLIE 254
Query: 390 QHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPS---EMQVSALELAHP-- 444
Q +A D N +L + AR + P E V L+ HP
Sbjct: 255 LSAQLEPEA--DSIENNAQLLGHLDFLNAKARYAVVIKAIEPEFSPENHVRLLKARHPLL 312
Query: 445 -----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWF 499
VP DI I +++TGPNTGGKTI LKT+GL +MA+SGL I ++EY+ V F
Sbjct: 313 NPDKVVPNDIIIGEDYSAIIVTGPNTGGKTITLKTLGLLQIMAQSGLFIPAAEYSSVGIF 372
Query: 500 DSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 559
+FADIGDEQS+ QSLSTFS H+ I +I+S + SLVL DE+GAGT+P EG AL M+
Sbjct: 373 KEIFADIGDEQSIEQSLSTFSAHMVNIIDILSGTDKDSLVLFDELGAGTDPQEGAALAMA 432
Query: 560 LLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSA 619
+L+A E+G+ ++ATTH+ ELK Y+ NA MEFD L+PTYK L GVPGRS+A
Sbjct: 433 ILDAVGETGA-YSVATTHYPELKVYGYNRADTINASMEFDIDSLRPTYKFLIGVPGRSNA 491
Query: 620 INIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLH 679
+ IA++LGL ++ +A L S E+N++I ++ + L E ++ +R L
Sbjct: 492 LEIAKKLGLDKNIIDSASALTTEDSQELNDMIADLVARRNAVLTQQVELTQKVIENRQL- 550
Query: 680 KNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLV----HK 735
KN ++ LE +R + V++ K A + A + + HK
Sbjct: 551 KNDYESK---LESIDKERAKAVEE-----------AKKEANHIVADARRKTDKIIADLHK 596
Query: 736 RAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT 795
A+ ++ K+ + L + Q+ P+ ++ +++ KQ+ +V
Sbjct: 597 MARD-----GAAIKENKLIDAKGALNAMHQE--------PSATNNRILRKAKQAKQVPLL 643
Query: 796 ELPNVGDLVHVSSFGKKGTVI-KVEPSKEEIVVQVGNMKWIMKFTDI 841
VGD V V +G++GT++ K++ K E VQ+G +K ++ +I
Sbjct: 644 ----VGDTVLVREYGQQGTIVRKLKDHKFE--VQMGILKMVLTSEEI 684
>gi|379724074|ref|YP_005316205.1| recombination and DNA strand exchange inhibitor protein
[Paenibacillus mucilaginosus 3016]
gi|378572746|gb|AFC33056.1| recombination and DNA strand exchange inhibitor protein
[Paenibacillus mucilaginosus 3016]
Length = 794
Score = 228 bits (582), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 222/808 (27%), Positives = 378/808 (46%), Gaps = 132/808 (16%)
Query: 44 DKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA 103
+K S + L L++ + ++ A TSLG+ + + + ++ + R L T+ A
Sbjct: 2 NKNSSYSQKILATLDFHAVLERCAAHASTSLGK--SRVEELEPSGSFDEVKRRLQATDEA 59
Query: 104 IEMQK-HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAA 162
+ +++ G + ++ A+ R L P E L + Q LQ L +
Sbjct: 60 VNVERLKGGAPFG----GIRDIRPALHRARIGGMLNPAELLDIALTSQGGRRLQRFLES- 114
Query: 163 IKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLE 222
I ED + + L + + +++L I Q +DE+ + DSASP L + R +++ E
Sbjct: 115 INEDYPVPL----LVESTEPMTDHKALEDRIRQCIDENAHVVDSASPELARIRSELRGSE 170
Query: 223 RKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVI 278
K + ++ ++R + + + + V+ + R I + S F G++ S+SG I
Sbjct: 171 SKARERLEQMVRTPSIQKMLQDNLVTIRNDRYVIPVKQEYRSHFGGMIHDQSASGATLFI 230
Query: 279 EPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGII----QLDVVNA 334
EP + V +N+ +++ L L E+ +V ++I +ML+ ++ L VVN
Sbjct: 231 EPEAVVQMNNRVRE-------------LKLKEEAEV--EKILRMLSALVAEAADLLVVNV 275
Query: 335 RATYSLSFGGTSPNIFLPQDMKRSLTHE-PVTSKVSSSEREWTIYLPKAYHPLLLQQHKQ 393
L F IF + R++ P+ ++R + I L + HPL+ +
Sbjct: 276 EILGELDF------IFAKAGLARTMKATLPLL-----NDRGF-IKLKRGRHPLIASE--- 320
Query: 394 KTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIAR 453
N+ P +D+ +
Sbjct: 321 ----------------------------------NVVP---------------LDVELGG 331
Query: 454 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 513
K +++TGPNTGGKT+ LKT+GL +MA SG+ + + E +++ FD+++ADIGDEQS+
Sbjct: 332 KYSSIIVTGPNTGGKTVSLKTIGLLSLMAMSGMFVPAEEGSQLCVFDAIYADIGDEQSIE 391
Query: 514 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 573
Q+LSTFS H+ I I+ + T +SLVLLDE+GAGT+P EG+AL +S+L+ G + +
Sbjct: 392 QNLSTFSSHMTNIIRILREMTPKSLVLLDELGAGTDPAEGSALAISILDYMHRMGCRI-V 450
Query: 574 ATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVV 633
ATTH+ ELK Y NA MEFD L+PTY++L GVPGRS+A IAERLGL ++
Sbjct: 451 ATTHYTELKAYAYDRQGVINASMEFDVQTLRPTYRLLVGVPGRSNAFAIAERLGLSRSII 510
Query: 634 QNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHC 693
+NAR G + +I +E+ Q EA R + L R + E
Sbjct: 511 ENARGQVGEEEQRVESMIATLEQNTIQA-----EA------ERATAQELRREVETLREKL 559
Query: 694 ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKV 753
++R R ++ D L+ K+ ++ + ++AR + +LR L +
Sbjct: 560 NAERHR-FEEQRD------KLLEKAEREGREAVAKARREAEEVIAELR-----RLQREEA 607
Query: 754 GKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKG 813
G + S ++ D P S K + Q P+ K+ E GD V V++ G++G
Sbjct: 608 GGVKDHKLSELKKKLNDAA--PELRS----KQVSQLPK-KKPETIGPGDEVLVTNLGQRG 660
Query: 814 TVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V+ V + +E VQ+G +K + D+
Sbjct: 661 HVVDV-VNAQEYTVQLGILKMKVNKADL 687
>gi|261408901|ref|YP_003245142.1| MutS2 family protein [Paenibacillus sp. Y412MC10]
gi|261285364|gb|ACX67335.1| MutS2 family protein [Paenibacillus sp. Y412MC10]
Length = 789
Score = 228 bits (582), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 154/397 (38%), Positives = 222/397 (55%), Gaps = 32/397 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+D+ + +++TGPNTGGKT+ LKT+GL +MA SGL I + E +++ FD+++A
Sbjct: 317 VPLDVELGNSYTSIIVTGPNTGGKTVTLKTIGLLNLMAMSGLFIPAEEGSQMCVFDAIYA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I+SQ T +SLVLLDE+GAGT+P EG+AL +S+LE
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIIRILSQMTPKSLVLLDEVGAGTDPAEGSALAISILEHI 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G + IATTH+ ELK Y NA MEFD L PTY++L GVPGRS+A IAE
Sbjct: 437 HRMGCRM-IATTHYSELKAYAYERKGVINASMEFDINTLSPTYRLLVGVPGRSNAFAIAE 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGLPG +++ AR EV E +R + + + E RH + R + +
Sbjct: 496 RLGLPGSILEFAR----------GEVKEEDQRVE-HMIASLEENRHTAEVEREKAEQV-- 542
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
RK +E + +++QK+ + LV K+ + +ARS + LR A
Sbjct: 543 --RKEMEELRQRHQQELQKLEEQKD---KLVDKARAEARQIVDKARSEAEEIIADLRKIA 597
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
+ K +H L + ++ +D E + + KQ +R+ P GD V
Sbjct: 598 QEEGASVK----EHKLIAARKR--LDDAEPQQGKKTGGQRSAKQ----QRSIEP--GDEV 645
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V S +KG V+++ SK E VVQ+G MK + D+
Sbjct: 646 RVYSLNQKGHVVEMSGSK-EAVVQLGIMKMKVALDDL 681
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 149/291 (51%), Gaps = 22/291 (7%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLR-LLDETNAAIEMQK-HGS 111
L LE+ K+ ++++ + +TS+G +L + +T ++++ LL T+ A + + G+
Sbjct: 6 LHTLEYRKILNTLTQYTQTSMG---SLRAERLMPETDLEAVKDLLAATDQAYTVDRLKGN 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
S ++ + A++ R L P+E LA + S ++ + AAI ED + I
Sbjct: 63 PSFR----GITDINDALKRARIGGTLNPHELLATSNTIHGSRRIKRFI-AAIHEDEKIDI 117
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
F L+ +I + + L +I +DE + DSAS L Q R +++ E ++ + ++
Sbjct: 118 LF-NLSDLISE---QKPLEDAIRLCIDETAEVLDSASAELSQIRRELRGGEVRIREKLES 173
Query: 232 LIRNENNESLFLE-VSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLN 287
+IR+++ + + + +I G R I A+ S G ++ SG G+ IEP S V +N
Sbjct: 174 MIRSQSVAKMLQDQLITIRGDRFVIPVKAEYRSHFGGIVHDQSGSGATLFIEPESIVAMN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKM--QVDLDEIEKMLNGIIQLDVVNARA 336
++L++ R + E +L LT ++ Q +L I+ L G QLD + A+A
Sbjct: 234 NKLRETRMREEREIEVILQKLTAQVGEQAELLSIDVDLIG--QLDFIFAKA 282
>gi|377809473|ref|YP_005004694.1| mutS2 family protein [Pediococcus claussenii ATCC BAA-344]
gi|361056214|gb|AEV95018.1| mutS2 family protein [Pediococcus claussenii ATCC BAA-344]
Length = 786
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 187/615 (30%), Positives = 292/615 (47%), Gaps = 108/615 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+ K+ ++ F T+ GR T+L + + SL NA E
Sbjct: 6 LKTLEYSKIKSEINEFIGTASGR----TELNEMVPAVEHSLV----QNALTET------- 50
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAA--------- 162
L V+++ VK I R A + L + A+L E Q+ LR
Sbjct: 51 --LDAVNINRVKGGIPVPRLADISEALKRLKIDAVLNGQELSQIGNVLRTTRNVTDFFSD 108
Query: 163 IKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLE 222
++ D L +R L Q +L + + + + ++ +G + ++ASP L R + +E
Sbjct: 109 LENDDQLDMRI--LDQTSQELVTVPDVEQRLSRSLEGNGHLTNAASPDLAYLRSTITRIE 166
Query: 223 RKLYQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIE 279
++ Q M+ L R N + L + +I R + + S G ++ S+SG IE
Sbjct: 167 NEIRQKMEKLTRGNNAKYLSEPIVTIRNERFVLPVKTEYRSKLGGVVHDQSASGQTLYIE 226
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
P + V LN++L+Q + +V E+ + L+E + D +++ + + D++NA+A Y+
Sbjct: 227 PEAVVELNNDLRQNQVAVVHEEQRIFQELSELVAPHRDTLKQNDHILGHFDLLNAKARYA 286
Query: 340 LSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAW 399
T P I + I L KA HPL+
Sbjct: 287 AKIKATEPKI----------------------SEDNQINLRKARHPLI------------ 312
Query: 400 KDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLV 459
K GN R G + + L+
Sbjct: 313 -----------DPKRVVGNDIRLG-----------------------------KDFKTLI 332
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
ITGPNTGGKTI LKTVGL +M +SG+ I ++E + + FD +FADIGDEQS+ Q+LSTF
Sbjct: 333 ITGPNTGGKTISLKTVGLLQLMGQSGIFIPANENSTIGIFDEIFADIGDEQSIEQNLSTF 392
Query: 520 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579
S H+ I +I++Q + SLVL DE+GAGT+P EG AL +++L+ SL+ +ATTH+
Sbjct: 393 SSHMDNIIHILAQIDNNSLVLFDELGAGTDPKEGAALAIAILDDVRNHASLV-MATTHYP 451
Query: 580 ELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 639
ELKT Y NA MEF+ LKPTYK+L G+PG+S+A +I+ RLGL ++ AR L
Sbjct: 452 ELKTYGYERSETINASMEFNVETLKPTYKLLIGIPGQSNAFDISSRLGLDNRLISQARDL 511
Query: 640 YGAASAEINEVIIEM 654
S ++N +I ++
Sbjct: 512 VDQDSQDLNNMIKDL 526
>gi|422759830|ref|ZP_16813592.1| DNA mismatch repair protein [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322412665|gb|EFY03573.1| DNA mismatch repair protein [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 778
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 155/400 (38%), Positives = 228/400 (57%), Gaps = 43/400 (10%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L PV D+ ++ V+VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + +KV F
Sbjct: 307 LQEPVANDLHFSKDLAVIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILADKGSKVAVFS 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++Q+ + SLVL DE+GAGT+P EG +L M++
Sbjct: 367 GIFADIGDEQSIEQSLSTFSSHMTHIVAILNQADADSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + ++ T+ATTH+ ELK + ENA MEFD + LKPTY+ + GVPGRS+A
Sbjct: 427 LEQLRLT-NVKTMATTHYPELKAYGIETPYVENASMEFDSMSLKPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF---LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+ + S ++N +I ++ER + L+H+ E N
Sbjct: 486 EIARRLGLAEHIVKEAQTMTDTDS-DVNRIIEQLERQTLESRKRLDHIREVEQ-----DN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
L N R +K+ + + ++++K A AR +V + L S S L K A
Sbjct: 540 LKFN--RAVKKLYNEFSQAKDKEIEK---ATLEAREIVDLA---LAESDSILNQLHDKAA 591
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL 797
L+P H K Q +Q +K + + + V+K KQ
Sbjct: 592 --LKP------HEVIEAKGQ------LKQLVPEK----SLSQNKVLKKAKQ------LRA 627
Query: 798 PNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
P VGD + V+++G++GT++K E ++ QVG +K +K
Sbjct: 628 PRVGDDIIVTAYGQRGTLVK-ELKDKKWEAQVGLIKMTLK 666
Score = 40.8 bits (94), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 148/343 (43%), Gaps = 53/343 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLR---LLDETNAAIEMQKH- 109
L LE+DK+ ++ +T G L QL +N Y + ++ L E A I ++ H
Sbjct: 6 LEQLEFDKVKEQFRAYLQTEQGNR-ELDQLEPLN--YHEKIKHYFLEIEEMAGIFVEHHH 62
Query: 110 ---GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
GS LS + +++R + + L E LAV +LQ S E
Sbjct: 63 FALGS---------LSDISASMRRLELEADLSIPELLAVKKILQVS-----------AEA 102
Query: 167 ADLYIRFMPLT-QMIMQLFVNRSLIKSI---MQVVDEDGSIKDSASPALKQSRGQVQMLE 222
+ Y+ + Q + +LF N L S+ +Q +++ G ++ ASP L++ R + E
Sbjct: 103 SRFYVDLENVQLQALKRLFENLELFLSLQGSLQAINDGGFVESFASPELEKIRRSISDKE 162
Query: 223 RKLYQLMDMLIRNENN---ESLFLEVSSIHGRLCIRTGADQLSFKGLLLS-----SSSGI 274
++ L++ + + ESL ++S +GR + + +F+ + S+SG
Sbjct: 163 HASRNVLQDLLKKQGDYLSESL---IASRNGRSVLPV---KNTFRNKVAGVVHDISASGN 216
Query: 275 GSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNA 334
IEP + V LN+EL Q +A VL L++ ++ + + LD V A
Sbjct: 217 TVYIEPRALVQLNEELTQLQADERHEVSRVLQTLSDLIRPHSRVLTNNAWILGHLDFVRA 276
Query: 335 RATYSLSFGGTSPNIFLPQ-----DMKRSLTHEPVTSKVSSSE 372
+ Y T P I + +++ L EPV + + S+
Sbjct: 277 KYLYMRDNKATVPAISDDKSLQLLNVRHPLLQEPVANDLHFSK 319
>gi|269926462|ref|YP_003323085.1| MutS2 family protein [Thermobaculum terrenum ATCC BAA-798]
gi|269790122|gb|ACZ42263.1| MutS2 family protein [Thermobaculum terrenum ATCC BAA-798]
Length = 794
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 150/405 (37%), Positives = 221/405 (54%), Gaps = 42/405 (10%)
Query: 443 HP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKV 496
HP VPI IF+ RVLVITGPNTGGKT+ LKT GL +MA SGLH+ +SE A+V
Sbjct: 315 HPLLGRDVVPITIFLGGDFRVLVITGPNTGGKTVALKTTGLLSLMALSGLHLPTSERARV 374
Query: 497 PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556
P + ADIGDEQS+ QSLSTFS H+ I ++ + +L+LLDE+GAGT+P EG A+
Sbjct: 375 PVLKYILADIGDEQSIEQSLSTFSSHVINIKKMLEVAGPDTLLLLDELGAGTDPEEGAAI 434
Query: 557 GMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGR 616
++++ E +L+ +ATTH+ E+K + NA +EFD L PTY++ G+PGR
Sbjct: 435 AEAIIDYLLEKRALV-VATTHYPEIKVYAQTTPGVTNAAVEFDLETLSPTYRLTIGLPGR 493
Query: 617 SSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSR 676
S AI+IA+RLGLP +V++ A+ S N+++ ++E K + + EA
Sbjct: 494 SYAIDIAQRLGLPKVVIEAAKSRVSPESRAANDLLEQIEAEKKLADQRLAEAEQI----- 548
Query: 677 NLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR 736
RR+ E R R ++ +A I + + QQ R + +
Sbjct: 549 ---------RREAEE----LRSRAAAELQEAERIREQALEEGYQQALRELEDVRREIDEV 595
Query: 737 AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE 796
++L SASQ+ +K+G+ L + V+ VE S+ K P V R
Sbjct: 596 RRRL--SASQA--ASKLGEIADALRA------VENVERRVRKSTRGSK----RPSVIR-R 640
Query: 797 LPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
LP VGD V + SFG +G V+ + S E VQVG+++ + +D+
Sbjct: 641 LPQVGDSVRIKSFGTEGKVLSISDSTAE--VQVGSLRSRVPLSDL 683
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 144/342 (42%), Gaps = 45/342 (13%)
Query: 57 LEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDL 116
LE+DK+ +S SL RE L SLR L++ + AI Q+ + +L +
Sbjct: 11 LEYDKILQLLSKHTSFSLSRELAL------------SLRPLNDLDGAIRSQRETTEALRV 58
Query: 117 TGVDLSLVKSAIREVR----RAS---PLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ + R++R +AS L P+E L + + + + L + EDAD
Sbjct: 59 LQLKPDITIGGARDIRSLVTKASLGGVLDPSELLQISDTIAAANSFSRQL-GKVLEDAD- 116
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
F L+ + + L K I +D+ ++DSAS L + R Q++ +L Q +
Sbjct: 117 --SFSLLSAQLRHIVDLSDLRKQIDAAIDDQAQVRDSASTTLARIRSQLRSAHDRLMQHL 174
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVP 285
+ LI + + E ++ GR + AD ++ SG G +EPL+ V
Sbjct: 175 NSLISSSSYRDALQEPIITQRDGRYVVPVRADARHRIPGIVHDVSGSGQTLFVEPLATVD 234
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
+ + + + R ++ E +L L+E + +I + L + +LD A+A +S
Sbjct: 235 MGNRITELRRQESEEIERILAQLSEAVASVASDIMRTLLALARLDFALAKAKFSQHLHAC 294
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
P + VS+ ++LP A HPLL
Sbjct: 295 EPEL------------------VSAEYEGDKLFLPDARHPLL 318
>gi|260437715|ref|ZP_05791531.1| DNA mismatch repair protein MutS [Butyrivibrio crossotus DSM 2876]
gi|292809738|gb|EFF68943.1| DNA mismatch repair protein MutS [Butyrivibrio crossotus DSM 2876]
Length = 791
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 138/399 (34%), Positives = 213/399 (53%), Gaps = 32/399 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+DI++ L+ITGPNTGGKT+ LKT+GL +M +SGLHI +S+ +K+ F+ +FA
Sbjct: 315 VPVDIYLGDGYEQLIITGPNTGGKTVTLKTIGLFSLMGQSGLHIPASDNSKLTVFNDIFA 374
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+K I I+ ++ S SLVL DE+ AGT+P EG AL +S+L
Sbjct: 375 DIGDEQSIEQSLSTFSSHMKNIVYILKKADSNSLVLFDELCAGTDPTEGAALAISILRTL 434
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
S + TIATTH+ ELK S D ENAC EFD L PTY++L G+PG+S+A I+
Sbjct: 435 -HSKKITTIATTHYSELKIYALSTDGVENACCEFDVASLAPTYRLLIGIPGKSNAFAISG 493
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
+LGLP +++NA+ G ++ +VI ++E+ + + E + L KN L+
Sbjct: 494 KLGLPSEIIENAKANIGTSAKAFEDVISDLEKSRVTIEKEQAEIELYKKEIEEL-KNRLK 552
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ + L+ + K ++ +A AI R +A+ + + +A
Sbjct: 553 IKTERLDEKSDSIIEKARE--EADAILR---------------EAKETADETIRDFNKAA 595
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEH-PATASSSVVKDIKQSPRVKRTELPNVGDL 803
+ + + + ++T K + P S+ D ++GD
Sbjct: 596 KNGMTIQDLEAGRERIRKQLEKTNAKKAANKPVQTSNHTAADF------------HIGDK 643
Query: 804 VHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
VHV S GTV + SK + V +G + + D++
Sbjct: 644 VHVISMDLDGTVHTLPDSKGFLTVSMGILNSKVNIKDLI 682
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 156/346 (45%), Gaps = 28/346 (8%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
++L +LE+DK+ +S +A ++ G+ + S + Y +R ++ A +
Sbjct: 4 KALSILEFDKITERLSKYATSAPGKVLCRKLMPSTDLDY---IRKCEQDTTAASSRIFAK 60
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD-LY 170
SL +G L+ ++ I+ + S L +E L+V ALL + + +I+ + D L
Sbjct: 61 GSLGFSG--LTDIRPLIKSLEVGSSLGISELLSVAALLSVTGSAIRYDSNSIETNTDVLS 118
Query: 171 IRFM---PLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
RF PL+ ++ + +NR +I + I D AS LK R Q + + ++
Sbjct: 119 ERFNMLNPLSDILNE--INRCII--------SETEIADDASTNLKDIRRQQKNVNERIKS 168
Query: 228 LMDMLIRNENNESLFLE---VSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLS 282
+ +I + +L+ V++ GR C+ A+ S ++ S GS IEP+S
Sbjct: 169 ELSHMI--SGSYRTYLQDAVVTTRDGRYCVPVKAEYRSQVPGMIHDQSNTGSTFFIEPMS 226
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
V LN++L++ ++ +L +L+ E+ + + +LD + A+A +S S+
Sbjct: 227 IVKLNNDLRELEIKESEEISVILSSLSAMAGNYTTELLTNYDILKELDFIFAKAGFSHSY 286
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL 388
G+ P + + P+ SS IYL Y L++
Sbjct: 287 KGSEPIMDCDGKINIKKGRHPLID--SSKVVPVDIYLGDGYEQLII 330
>gi|255654753|ref|ZP_05400162.1| putative DNA mismatch repair protein [Clostridium difficile
QCD-23m63]
gi|296449499|ref|ZP_06891276.1| exopolyphosphatase [Clostridium difficile NAP08]
gi|296878178|ref|ZP_06902193.1| exopolyphosphatase [Clostridium difficile NAP07]
gi|296261563|gb|EFH08381.1| exopolyphosphatase [Clostridium difficile NAP08]
gi|296430931|gb|EFH16763.1| exopolyphosphatase [Clostridium difficile NAP07]
Length = 792
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 143/392 (36%), Positives = 222/392 (56%), Gaps = 31/392 (7%)
Query: 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD 508
I++ R LVITGPNTGGKT+ +KTVGL +M +SGLHI + + + +D+VFADIGD
Sbjct: 322 IYLGRDFHTLVITGPNTGGKTVTIKTVGLFALMTQSGLHIPADYGSSMCVYDNVFADIGD 381
Query: 509 EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
EQS+ QSLSTFS H+ I +I+ T+ SLV+ DE+GAGT+P+EG AL +++LE G
Sbjct: 382 EQSIEQSLSTFSSHMTNIVSILQNVTTDSLVIFDELGAGTDPVEGAALAIAVLEDINSVG 441
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+ IATTH+ ELK + ENA +EFD L PTYK+L GVPG+S+A I+ +LGL
Sbjct: 442 A-KCIATTHYSELKNYALTKSGVENAAVEFDIETLSPTYKLLIGVPGKSNAFEISRKLGL 500
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK 688
V+ A++ + + +V+ +E+ + + +E EA L + + + K
Sbjct: 501 SDYVISRAKEYINTENIALEDVLQNVEKNRIKAVEDREEAER---LKEEIERLKVEYDEK 557
Query: 689 ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL 748
LE SQR + ++K A + A S++ ++ +++ + RSL +RA + + + L
Sbjct: 558 -LEKLVSQRDKMIEK---AKSEAFSIIRQAKEEVDIIIKELRSLEQERASKEKNRKIEEL 613
Query: 749 HCTKVGKNQHVLTSNFQ--QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHV 806
+ LTS+ Q TV + P S+ +KD+K G+ V V
Sbjct: 614 --------RKELTSSMGSLQPTVKSMIVPK-VSNKEIKDLKP------------GEEVKV 652
Query: 807 SSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKF 838
+ + G+V+ V+ ++E VVQ+G MK + F
Sbjct: 653 ITLNQNGSVVSVDKKRKEAVVQIGIMKMTLPF 684
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 160/348 (45%), Gaps = 29/348 (8%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSI--NQTYQDSLRLLDETNAAIEMQ-K 108
+SLRVLE++K+ + A +SLG L + ++ N + + +L+ET+ A + K
Sbjct: 4 KSLRVLEYNKIIDLLKKKASSSLG----LKYIENLVPNTDFVEVKSMLEETSEAQSIIIK 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
GS L+ + ++ ++ + L P + + L+ + L+ SL ++ +ED +
Sbjct: 60 RGSVGLE----GIHDIEDKVKRAYIGASLDPGSLIMIADTLRVARRLRNSLSSSDEEDFN 115
Query: 169 LYIRFMPLTQMIMQ-LFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
P+ Q + L+V + + I + + I D+AS L+ R ++ + +
Sbjct: 116 -----YPIIQSLSNSLYVYKDIEDQIYNAIISEVEISDNASSTLRDIRRRIAQKNQSIRS 170
Query: 228 LMDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ +I + + + + S+ G R + A+ S G++ SSSG IEP++
Sbjct: 171 KLNSIISSTTYQKYLQDAIISLRGDRFVVPVKAEYRSQVAGIVHDQSSSGATLFIEPMTI 230
Query: 284 VPLNDELQQARASVTKAEEDV---LLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
V +N+EL+Q + + E + L A+ ++ DL +++L +LD ++ S+
Sbjct: 231 VEMNNELRQLKLGEQEEIERILSELSAMVGEVSEDLISNQEILG---RLDFAFSKGKLSI 287
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL 388
G P + + + P+ K TIYL + +H L++
Sbjct: 288 QMRGIEPTLNEDKYLNIKNGRHPLLDKKKVVAN--TIYLGRDFHTLVI 333
>gi|312870454|ref|ZP_07730574.1| recombination and DNA strand exchange inhibitor protein
[Lactobacillus oris PB013-T2-3]
gi|311094011|gb|EFQ52335.1| recombination and DNA strand exchange inhibitor protein
[Lactobacillus oris PB013-T2-3]
Length = 790
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 206/723 (28%), Positives = 343/723 (47%), Gaps = 132/723 (18%)
Query: 121 LSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMI 180
L+ +K ++ ++ + L E V +LQ S LS++ ++ + I+ L Q +
Sbjct: 68 LADIKPQMKRLKIGANLNGTELAQVTKVLQAS----LSVQNFFEQMREKKIKLRVLEQTV 123
Query: 181 MQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNES 240
+L S+ +++ VD DG I D AS L R + E ++ Q M + ++ +
Sbjct: 124 DRLVTIPSVTTRLVRSVDPDGRINDEASAKLHGIRQLISKTENEIRQQMAQYTQGKSAKY 183
Query: 241 LFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASV 297
L + ++ + R I A + F G++ S+SG IEP + + N+ L+QA+
Sbjct: 184 LSEPIVTVRNDRFVIPVLARYRNKFGGVVHDQSASGQTLYIEPGAVMEDNNHLRQAQ--- 240
Query: 298 TKAEEDVLLALTE------KMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFL 351
+ +++VL L E + D+ E++L LD +NA+A Y+
Sbjct: 241 IEEKQEVLRVLAELSALISPYRHDILNNEQILG---HLDFINAKAVYA------------ 285
Query: 352 PQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRR 411
++K SL P+ S + + L KA+HPL+ +D AN
Sbjct: 286 -HELKASL---PLLSA------DNQVNLRKAWHPLI-----------ARDQAVAN----- 319
Query: 412 RKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTIC 471
DI + + ++ITGPNTGGKTI
Sbjct: 320 ------------------------------------DIKLGGDYQAVIITGPNTGGKTIT 343
Query: 472 LKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS 531
LKT+G+ +M ++GL I + E + + FD+VFADIGDEQSL Q+LSTFSGH+ + I+
Sbjct: 344 LKTLGIIQLMGQAGLFIPAQEGSTIGVFDNVFADIGDEQSLEQNLSTFSGHMDNVKTILD 403
Query: 532 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591
Q T+ SLVLLDE+GAGT+P EG AL M++L+ + GSL+ I TTH+ ELK Y
Sbjct: 404 QLTANSLVLLDELGAGTDPKEGAALAMAILDEIGQRGSLVMI-TTHYPELKVYGYDRAKT 462
Query: 592 ENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI 651
NA MEFD+ L+PTY++L G+PGRS+ + IA+RLG+ ++ A+ L S ++N +I
Sbjct: 463 INASMEFDQATLQPTYRLLLGIPGRSNGLEIAKRLGIGSAIISEAQSLVSDDSQDLNAMI 522
Query: 652 IEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIA 711
++ + Q E + ++ + L + L+ QR + +++ A
Sbjct: 523 GDLVEQRKQAREESERLAKLVAQNQADQEEL----NQKLDRFNEQRDQLLER-------A 571
Query: 712 RSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDK 771
RS ++ Q+ + +A ++H +QL + ++ Q L + Q
Sbjct: 572 RS---QANHQVAQAKRKADRIIH-HLRQLEIQQGAGVKENQLMDAQGALNALHQ------ 621
Query: 772 VEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGN 831
++P +SV+K K+ + + GD V V S+G+ G E++ + GN
Sbjct: 622 -DNPRLQHNSVLKRAKEKHDLHK------GDAVLVKSYGQHG----------ELLSRRGN 664
Query: 832 MKW 834
KW
Sbjct: 665 HKW 667
>gi|81428007|ref|YP_395006.1| MutS family DNA mismatch repair protein [Lactobacillus sakei subsp.
sakei 23K]
gi|123564679|sp|Q38YN3.1|MUTS2_LACSS RecName: Full=MutS2 protein
gi|78609648|emb|CAI54694.1| DNA mismatch repair protein, MutS family [Lactobacillus sakei
subsp. sakei 23K]
Length = 787
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 147/417 (35%), Positives = 224/417 (53%), Gaps = 38/417 (9%)
Query: 432 SEMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKS 484
+E V + HP V DI I + +V+TGPNTGGKTI LKT+GL +MA+S
Sbjct: 297 AENHVDLKQARHPLIDATKVVANDIAIGADYQAIVVTGPNTGGKTITLKTLGLVQVMAQS 356
Query: 485 GLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEI 544
GL I + E ++V F +FADIGDEQS+ Q+LSTFS H++ I I+ Q +SLVLLDE+
Sbjct: 357 GLFITAREESQVGVFSDIFADIGDEQSIEQNLSTFSAHMENIIQILKQIDDRSLVLLDEL 416
Query: 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLK 604
GAGT+P EG AL +++L+ G+ + +A+TH+ ELK Y+ NA MEFD L+
Sbjct: 417 GAGTDPQEGAALAIAILDQIGIVGANV-VASTHYPELKIYGYNRPQTINASMEFDVATLQ 475
Query: 605 PTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEH 664
PTY++L GVPGRS+A +I+ RLGLP +V A+QL S ++N +I ++E +
Sbjct: 476 PTYRLLIGVPGRSNAFDISTRLGLPNSIVDQAKQLMNDESQDLNNMITDLENQRKAAETE 535
Query: 665 VHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCP 724
RH L + +LH+ L ++ E ++ + +K A ++V K+ +
Sbjct: 536 YQALRHELTEATDLHQQLSTAYQQFFEDRETEMTKAKEK-------ANAIVEKAEVKADK 588
Query: 725 SASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVK 784
++ R + + Q++ + Q K E + +K
Sbjct: 589 VITKLRDMQMNQGAQIKEN----------------------QLIDAKAELGQLHQETTLK 626
Query: 785 DIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K R KR + VGD V V+S+G++GT+I+ SK VQ+G +K + D+
Sbjct: 627 KNKVLQRAKRRQTLKVGDDVLVTSYGQRGTLIRQVDSK-NWEVQMGIIKMKIANDDL 682
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 141/310 (45%), Gaps = 34/310 (10%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + +A T+ G+E T L IN+ +RL ++T
Sbjct: 6 LKTLEYDKIKQMLQGYAITAFGQEQIAT-LEPINEADLIQIRL-NQTK------------ 51
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPN-EALAVVALLQFSETLQLS--LRAAIK------ 164
GVD+ +K I + + +RP+ + + + A+L SE Q+ LRA
Sbjct: 52 ---DGVDIERLKGGI-PLPQLENIRPHLKRIEIGAMLNGSELAQIGRVLRATSAVVRFFD 107
Query: 165 --EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLE 222
E +L ++ +P +++ Q L + I V +DG+I D+AS L+ R ++ LE
Sbjct: 108 DLEKDELELKALP--ELVAQFVTLPQLTERIRSSVADDGAILDTASTKLRGLRTGLKQLE 165
Query: 223 RKLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIE 279
++ M + L + +I + R I + + F G++ S+SG +E
Sbjct: 166 GQIRSRMASYTHGAKAKYLSDPIVTIRNDRYVIPVKQEYRGQFGGVVHDQSASGQTLFME 225
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
P + + LN+ L+Q + + E +L L+E + + I + QLD VNA+A +
Sbjct: 226 PQAIMELNNRLRQLQIEEQQEIERILAELSEAIMPERHNILANAELLGQLDFVNAKAQLA 285
Query: 340 LSFGGTSPNI 349
+ T P I
Sbjct: 286 KALKATEPLI 295
>gi|417927758|ref|ZP_12571146.1| MutS2 family protein [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|340765632|gb|EGR88158.1| MutS2 family protein [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
Length = 778
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 152/397 (38%), Positives = 226/397 (56%), Gaps = 37/397 (9%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L PV D+ ++ V+VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + +KV F
Sbjct: 307 LQEPVANDLHFSKDLAVIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILADKGSKVTVFS 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++Q+ + SLVL DE+GAGT+P EG +L M++
Sbjct: 367 GIFADIGDEQSIEQSLSTFSSHMTHIVAILNQADADSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + ++ T+ATTH+ ELK + ENA MEFD + LKPTY+ + GVPGRS+A
Sbjct: 427 LEQLRLT-NIKTMATTHYPELKAYGIETPYVENASMEFDSMSLKPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL +V+ A+ + S ++N +I ++E+ E+R L R + +
Sbjct: 486 EIARRLGLAEHIVKEAQNMTDTDS-DVNRIIEQLEK-------QTLESRKRLDYIREVEQ 537
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ L+ R + + K ++I A AR +V + L S S L K A L
Sbjct: 538 DNLKFNRAVKKLYNEFSQAKDKEIEKATLEAREIVDLA---LAESDSILNQLHDKAA--L 592
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+P H K Q +Q +K + + + V+K + K+ P V
Sbjct: 593 KP------HEVIEAKGQ------LKQLVPEK----SLSQNKVLK------KAKQLRAPRV 630
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
GD + V+++G++GT++K E ++ QVG +K +K
Sbjct: 631 GDDIIVTAYGQRGTLVK-ELKDKKWEAQVGLIKMTLK 666
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 150/343 (43%), Gaps = 53/343 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLR---LLDETNAAIEMQKH- 109
L LE+DK+ ++ +T G L QL +N + D ++ L E A I +++H
Sbjct: 6 LEQLEFDKVKEQFRAYLQTEQGNR-ELDQLEPLN--HHDKIKHYFLEIEEMAGIFVEQHH 62
Query: 110 ---GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
GS LS + +++R + + L E LAV +LQ S E
Sbjct: 63 FALGS---------LSDISASMRRLELEADLSIPELLAVKKILQVS-----------AEA 102
Query: 167 ADLYIRFMPLT-QMIMQLFVNRSLIKSI---MQVVDEDGSIKDSASPALKQSRGQVQMLE 222
+ Y+ + Q + +LF N L S+ +Q +++ G ++ ASP L++ R + E
Sbjct: 103 SRFYVDLENVQLQALKRLFENLELFPSLQGSLQAINDGGFVESFASPELEKIRRSISDKE 162
Query: 223 RKLYQLMDMLIRNENN---ESLFLEVSSIHGRLCIRTGADQLSFKGLLLS-----SSSGI 274
++ L++ + + ESL ++S +GR + + +F+ + S+SG
Sbjct: 163 HASRNVLQDLLKKQGDYLSESL---IASRNGRSVLPV---KNTFRNKVAGVVHDISASGN 216
Query: 275 GSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNA 334
IEP + V LN+EL Q +A VL AL++ ++ + + LD + A
Sbjct: 217 TVYIEPRALVQLNEELTQLQADERHEVSRVLQALSDLIRPHSRALTNNAWILGHLDFIRA 276
Query: 335 RATYSLSFGGTSPNIFLPQ-----DMKRSLTHEPVTSKVSSSE 372
+ Y T P I + +++ L EPV + + S+
Sbjct: 277 KYLYMRDNKATVPAISDDKSLQLLNVRHPLLQEPVANDLHFSK 319
>gi|408402357|ref|YP_006860321.1| recombination inhibitory protein MutS2 [Streptococcus dysgalactiae
subsp. equisimilis RE378]
gi|407968586|dbj|BAM61824.1| recombination inhibitory protein MutS2 [Streptococcus dysgalactiae
subsp. equisimilis RE378]
Length = 778
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 152/397 (38%), Positives = 226/397 (56%), Gaps = 37/397 (9%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L PV D+ ++ V+VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + +KV F
Sbjct: 307 LQEPVANDLHFSKDLAVIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILADKGSKVAVFS 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++Q+ + SLVL DE+GAGT+P EG +L M++
Sbjct: 367 GIFADIGDEQSIEQSLSTFSSHMTHIVAILNQADADSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + ++ T+ATTH+ ELK + ENA MEFD + LKPTY+ + GVPGRS+A
Sbjct: 427 LEQLRLT-NIKTMATTHYPELKAYGIETPYVENASMEFDSMSLKPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL +V+ A+ + S ++N +I ++E+ E+R L R + +
Sbjct: 486 EIARRLGLAEHIVKEAQNMTDTDS-DVNRIIEQLEK-------QTLESRKRLDYIREVEQ 537
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ L+ R + + K ++I A AR +V + L S S L K A L
Sbjct: 538 DNLKFNRAVKKLYNEFSQAKDKEIEKATLEAREIVDLA---LAESDSILNQLHDKAA--L 592
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+P H K Q +Q +K + + + V+K + K+ P V
Sbjct: 593 KP------HEVIEAKGQ------LKQLVPEK----SLSQNKVLK------KAKQLRAPRV 630
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
GD + V+++G++GT++K E ++ QVG +K +K
Sbjct: 631 GDDIIVTAYGQRGTLVK-ELKDKKWEAQVGLIKMTLK 666
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 150/343 (43%), Gaps = 53/343 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLR---LLDETNAAIEMQKH- 109
L LE+DK+ ++ +T G L QL +N + D ++ L E A I +++H
Sbjct: 6 LEQLEFDKVKEQFRAYLQTEQGNR-ELDQLEPLN--HHDKIKHYFLEIEEMAGIFVEQHH 62
Query: 110 ---GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
GS LS + +++R + + L E LAV +LQ S E
Sbjct: 63 FALGS---------LSDISASMRRLELEADLSIPELLAVKKILQVS-----------AEA 102
Query: 167 ADLYIRFMPLT-QMIMQLFVNRSLIKSI---MQVVDEDGSIKDSASPALKQSRGQVQMLE 222
+ Y+ + Q + +LF N L S+ +Q +++ G ++ ASP L++ R + E
Sbjct: 103 SRFYVDLENVQLQALKRLFENLELFPSLQGSLQAINDGGFVESFASPELEKIRRSISDKE 162
Query: 223 RKLYQLMDMLIRNENN---ESLFLEVSSIHGRLCIRTGADQLSFKGLLLS-----SSSGI 274
++ L++ + + ESL ++S +GR + + +F+ + S+SG
Sbjct: 163 HASRNVLQDLLKKQGDYLSESL---IASRNGRSVLPV---KNTFRNKVAGVVHDISASGN 216
Query: 275 GSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNA 334
IEP + V LN+EL Q +A VL AL++ ++ + + LD + A
Sbjct: 217 TVYIEPRALVQLNEELTQLQADERHEVSRVLQALSDLIRPHSRALTNNAWILGHLDFIRA 276
Query: 335 RATYSLSFGGTSPNIFLPQ-----DMKRSLTHEPVTSKVSSSE 372
+ Y T P I + +++ L EPV + + S+
Sbjct: 277 KYLYMRDNKATVPAISDDKSLQLLNVRHPLLQEPVANDLHFSK 319
>gi|337751036|ref|YP_004645198.1| recombination and DNA strand exchange inhibitor protein
[Paenibacillus mucilaginosus KNP414]
gi|336302225|gb|AEI45328.1| recombination and DNA strand exchange inhibitor protein
[Paenibacillus mucilaginosus KNP414]
Length = 794
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 221/808 (27%), Positives = 378/808 (46%), Gaps = 132/808 (16%)
Query: 44 DKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA 103
+K S + L L++ + ++ A TSLG+ + + + ++ + R L T+ A
Sbjct: 2 NKNSSYSQKILATLDFHAVLERCAAHASTSLGK--SRVEELEPSGSFDEVKRRLQATDEA 59
Query: 104 IEMQK-HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAA 162
+ +++ G + ++ A+ R L P E L + Q LQ L +
Sbjct: 60 VNVERLKGGAPFG----GIRDIRPALHRARIGGMLNPAELLDIALTSQGGRRLQRFLES- 114
Query: 163 IKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLE 222
I ED + + L + + +++L I Q +DE+ + DSASP L + R +++ E
Sbjct: 115 INEDYPVPL----LVESTEPMTDHKALEDRIRQCIDENAHVVDSASPELARIRSELRGSE 170
Query: 223 RKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVI 278
K + ++ ++R + + + + V+ + R I + S F G++ S+SG I
Sbjct: 171 SKARERLEQMVRTPSIQKMLQDNLVTIRNDRYVIPVKQEYRSHFGGMIHDQSASGATLFI 230
Query: 279 EPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGII----QLDVVNA 334
EP + V +N+ +++ L L E+ +V ++I +ML+ ++ L VVN
Sbjct: 231 EPEAVVQMNNRVRE-------------LKLKEEAEV--EKILRMLSALVAEAADLLVVNV 275
Query: 335 RATYSLSFGGTSPNIFLPQDMKRSLTHE-PVTSKVSSSEREWTIYLPKAYHPLLLQQHKQ 393
L F IF + R++ P+ ++R + I L + HPL+ +
Sbjct: 276 EILGELDF------IFAKAGLARTMKATLPLL-----NDRGF-IKLKRGRHPLIASE--- 320
Query: 394 KTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIAR 453
N+ P +D+ +
Sbjct: 321 ----------------------------------NVVP---------------LDVELGG 331
Query: 454 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLS 513
K +++TGPNTGGKT+ LKT+GL +MA SG+ + + E +++ FD+++ADIGDEQS+
Sbjct: 332 KYSSIIVTGPNTGGKTVSLKTIGLLSLMAMSGMFVPAEEGSQLCVFDAIYADIGDEQSIE 391
Query: 514 QSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTI 573
Q+LSTFS H+ I I+ + T +SLVLLDE+GAGT+P EG+AL +S+L+ G + +
Sbjct: 392 QNLSTFSSHMTNIIRILREMTPKSLVLLDELGAGTDPAEGSALAISILDYMHRMGCRI-V 450
Query: 574 ATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVV 633
ATTH+ ELK Y NA MEFD L+PTY++L GVPGRS+A IAERLGL ++
Sbjct: 451 ATTHYTELKAYAYDRQGVINASMEFDVQTLRPTYRLLVGVPGRSNAFAIAERLGLSRSII 510
Query: 634 QNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHC 693
+NAR G + +I +E+ Q EA R + L R + E
Sbjct: 511 ENARGQVGEEEQRVESMIATLEQNTIQA-----EA------ERATAQELRREVETLREKL 559
Query: 694 ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKV 753
++R R ++ D L+ K+ ++ + ++AR + +LR L +
Sbjct: 560 NAERHR-FEEQRD------KLLEKAEREGREAVAKARREAEEVIAELR-----RLQREEA 607
Query: 754 GKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKG 813
G + S ++ D P S K + Q P+ K+ E GD V V++ G++G
Sbjct: 608 GGVKDHKLSELKKKLNDAA--PELRS----KQVSQLPK-KKPETIGPGDEVLVTNLGQRG 660
Query: 814 TVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
++ V + +E VQ+G +K + D+
Sbjct: 661 HIVDV-VNAQEYTVQLGILKMKVNKADL 687
>gi|168211671|ref|ZP_02637296.1| MutS2 family protein [Clostridium perfringens B str. ATCC 3626]
gi|170710370|gb|EDT22552.1| MutS2 family protein [Clostridium perfringens B str. ATCC 3626]
Length = 786
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 201/698 (28%), Positives = 327/698 (46%), Gaps = 120/698 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
LRVLE++K+ V +A T +E L L + Y D L+ET A++ + + G+
Sbjct: 6 LRVLEFNKIKELVKGYAITKSAKEMVL-DLKPYDSVY-DVKEHLEETKEALDILMRKGNP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L VK AI + L++ LL+ L ++ + + D R
Sbjct: 64 PFE----GLYDVKEAITRAEKGG------VLSIEGLLRIGNMLSVTRKLS-----DFLAR 108
Query: 173 FMP------LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
L M L V R + +I + + + I DSAS L R ++ +
Sbjct: 109 KEEEEEHRILEGMREGLIVLRGIESAISKAIVSEDEIADSASDKLYSIRRSLKEKNSSIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ ++R+ N + L + ++ G R I A+ S GL+ SS+G IEP +
Sbjct: 169 DKVNYIVRS-NAQYLQDSLYTVRGDRYVIPVKAEYKSQVPGLVHDQSSTGATLFIEPTAL 227
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+E+++ E +L L+ + ++D I+ N I++LD + A+A Y G
Sbjct: 228 VNLNNEIKELMLKERAEIERILAELSALVYKNIDVIKVNFNIIVELDFIFAKAKYGSDLG 287
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
GT P + E I L A HPL+
Sbjct: 288 GTLPIV----------------------NEEGVIDLIDARHPLI---------------- 309
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
P + VS+ DI++ R+ L+ITGP
Sbjct: 310 ---------------------------PKDKVVSS---------DIYLGREFSTLLITGP 333
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT GL +M SGL I +SE + + +F+ +FADIGDEQS+ QSLSTFS H+
Sbjct: 334 NTGGKTVTLKTTGLIELMGLSGLLIPASENSSISFFEEIFADIGDEQSIEQSLSTFSSHM 393
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I I+ ++ ++S VL DE+GAGT+P EG AL +S+LE G + ++TTH+ ELK
Sbjct: 394 TNIVRIMEKANNKSFVLFDELGAGTDPTEGAALAISILENLRARGCRI-MSTTHYSELKG 452
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
+ ENA +EF+ L+PTY++L GVPG+S+A I+ RLGL V++ A+++
Sbjct: 453 YALKTENVENASVEFNVETLRPTYRLLIGVPGKSNAFEISRRLGLKDNVIEEAKKVISTE 512
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
S + ++I + + + ++ ++AR +L + K + R K ++F +++
Sbjct: 513 SLQFEDLI---QSLQEKSIKAENDAREAAILRNDAEK--YKNRYK-------EKFERIES 560
Query: 704 ISD-AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ D A AR + A+Q+ SA + + K + L
Sbjct: 561 VRDNVYADAR----REAKQILDSAKEEADAILKNMRDL 594
>gi|168214914|ref|ZP_02640539.1| MutS2 family protein [Clostridium perfringens CPE str. F4969]
gi|170713649|gb|EDT25831.1| MutS2 family protein [Clostridium perfringens CPE str. F4969]
Length = 786
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 201/698 (28%), Positives = 328/698 (46%), Gaps = 120/698 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
LRVLE++K+ V +A T +E L L + Y D L+ET A++ + + G+
Sbjct: 6 LRVLEFNKIKELVKGYAITKSAKEMVL-DLKPYDSVY-DVKEHLEETKEALDILMRKGNP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L VK AI + L++ LL+ + L ++ + + D R
Sbjct: 64 PFE----GLYDVKEAITRAEKGG------VLSIEGLLRIGKMLSVTRKLS-----DFLAR 108
Query: 173 FMP------LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
L M L V R + +I + + + I DSAS L R ++ +
Sbjct: 109 KEEEEEHRILEGMREGLIVLRGVESAISKAIVSEDEIADSASDKLYSIRRSLKEKNSSIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ ++R+ N + L + ++ G R I A+ S GL+ SS+G IEP +
Sbjct: 169 DKVNSIVRS-NAQYLQDSLYTVRGDRYVIPVKAEYKSQVPGLVHDQSSTGATLFIEPTAL 227
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+E+++ E +L L+ + ++D I+ N I++LD + A+A Y G
Sbjct: 228 VNLNNEIKELMLKERAEIERILAELSALVYKNIDVIKVNFNIIVELDFIFAKAKYGSDLG 287
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
GT P + E I L A HPL+
Sbjct: 288 GTMPIV----------------------NEEGVIDLMDARHPLI---------------- 309
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
P + VS+ DI++ R+ L+ITGP
Sbjct: 310 ---------------------------PKDKVVSS---------DIYLGREFSTLLITGP 333
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT GL +M SGL I +SE + + +F+ +FADIGDEQS+ QSLSTFS H+
Sbjct: 334 NTGGKTVTLKTTGLIELMGLSGLLIPASENSSISFFEEIFADIGDEQSIEQSLSTFSSHM 393
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I I+ ++ ++S VL DE+GAGT+P EG AL +S+LE G + ++TTH+ ELK
Sbjct: 394 TNIVKIMEKANNKSFVLFDELGAGTDPTEGAALAISILENLRARGCRI-MSTTHYSELKG 452
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
+ ENA +EF+ L+PTY++L GVPG+S+A I+ RLGL V++ A+++
Sbjct: 453 YALKTENVENASVEFNVETLRPTYRLLIGVPGKSNAFEISRRLGLKDNVIEEAKKVISTE 512
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
S + ++I + + + ++ ++AR +L + K + R K ++F +++
Sbjct: 513 SLQFEDLI---QSLQEKSIKAENDAREAAILRNDAEK--YKNRYK-------EKFERIES 560
Query: 704 ISD-AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ D A AR + A+Q+ SA + + K + L
Sbjct: 561 VRDNVYADAR----REAKQILDSAKEEADAILKNMRDL 594
>gi|206901081|ref|YP_002251021.1| MutS2 protein [Dictyoglomus thermophilum H-6-12]
gi|206740184|gb|ACI19242.1| MutS2 protein [Dictyoglomus thermophilum H-6-12]
Length = 778
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 190/650 (29%), Positives = 305/650 (46%), Gaps = 129/650 (19%)
Query: 199 EDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTG 257
+DG + DSASP LKQ R + + L +K+ + ++ +I+ E L ++ +I HGR +
Sbjct: 135 QDGEVVDSASPELKQIRQKKERLNQKIKETLENIIQKEWRSYLQDQIITIRHGRYVVPIR 194
Query: 258 ADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKM 312
+ F+G + S+SG+ +EP V LN+++ + + E +L LT +
Sbjct: 195 QE---FRGKIQGIVHDQSTSGLTVYVEPQVIVELNNQIALLESEEKREIERILTRLTSIL 251
Query: 313 QVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSE 372
+EI + N R ++ L F + +K + H+ +T + +
Sbjct: 252 LSYKEEI-----------LENLRTSFELDF--------VYAKIKWAEKHKAITPILEKEK 292
Query: 373 REWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPS 432
I L +A HP L GEK
Sbjct: 293 P--LIILREARHPFL-----------------------------------GEK------- 308
Query: 433 EMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE 492
VPI + + R LVITGPNTGGKT+ LKT+GL V++ ++G+ + + E
Sbjct: 309 -----------AVPISLEVGRTFNTLVITGPNTGGKTVTLKTIGLFVLLNQAGIPVPAKE 357
Query: 493 YAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ----STSQSLVLLDEIGAGT 548
+ F+ VFADIGDEQS+ Q+LSTFS H+ I + I + L+L+DE+GAGT
Sbjct: 358 GTVLGIFNQVFADIGDEQSIEQNLSTFSSHMTNIISFIDYLERTGDKRVLILIDELGAGT 417
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG AL ++LLE F E G++ IA TH +LK + ENA MEFDE+ LKP YK
Sbjct: 418 DPQEGAALAVALLEYFHEKGTINVIA-THFPQLKVIASKYPGMENASMEFDEISLKPLYK 476
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
++ G+PG+S+AI I++RLGLP ++ + L ++ EVI E++R + ++ E + +
Sbjct: 477 VVMGIPGKSNAILISKRLGLPRKILDRSLSLLSEDEIKLEEVIGELQRDRRRYEEEIEKI 536
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
L ++L +RKI E K Q L K ++L S+
Sbjct: 537 -------NKLKRDLQEEKRKIQEEKEMLEKEKAQ-----------LKAKYKEELFRDISK 578
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
+ + ++L+ +SL Q L + ++ T+++ P
Sbjct: 579 VEGKIREIIRKLQ---EESLTMKDAQSLQEELRNLRKELTIEEKREPENL---------- 625
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVG----NMKW 834
T +P++GD V + S K+G VI V+ K+ +VQVG N+ W
Sbjct: 626 ------TYIPHIGDRVLLRSTKKEGYVIDVDNEKKTALVQVGLLKINVPW 669
>gi|431792234|ref|YP_007219139.1| DNA mismatch repair protein, MutS family [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430782460|gb|AGA67743.1| DNA mismatch repair protein, MutS family [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 789
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 142/416 (34%), Positives = 219/416 (52%), Gaps = 43/416 (10%)
Query: 435 QVSALELAHP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
++S ++ HP VP+ I + + +V+TGPNTGGKT+ LKT+GL MA+ GLHI
Sbjct: 300 EISLVQARHPLLTGKVVPLTIELGTRFDTVVVTGPNTGGKTVALKTLGLLAAMAQCGLHI 359
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ ++V F +FADIGDEQS+ QSLSTFSGH++ I I+ ++ +SL+LLDE+GAGT
Sbjct: 360 PAESDSRVGVFTQIFADIGDEQSVEQSLSTFSGHMRNIVEIVEKADERSLILLDEVGAGT 419
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG+AL M+++ E GS + +ATTH+G LK Y+ ENA +EFD L+PTY+
Sbjct: 420 DPTEGSALAMAIIAQLHERGSRI-VATTHYGALKNFAYNTPRVENASVEFDSETLRPTYR 478
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
+L G+PG+S+A IA RLGLP V+ AR ++ ++I +E + +
Sbjct: 479 LLIGIPGKSNAFYIAGRLGLPEEVLVRARTYVTEREMQVADLIENLEDTQREI------- 531
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
+ K R R+I+E + K QK+ D + L+ K+ Q +
Sbjct: 532 --------DFEKRRAREERQIIEIESLGLKEKSQKLEDE---YQGLMAKAKDQATEIVRE 580
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
AR + +L+ + + Q VD+ SS V
Sbjct: 581 ARREAERLIDELKLALKE---------------DRKDQQAVDRARQGIRKLSSRVGTSDS 625
Query: 789 SPRVKRTELP---NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
PR P +G +V+++ +KG V+K+ S EI+VQ G +K + ++I
Sbjct: 626 QPRASEGVNPEDLKLGQMVYMTKLRQKGQVLKLPNSSGEILVQAGVIKLNVPLSEI 681
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 118/242 (48%), Gaps = 14/242 (5%)
Query: 133 RASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQ-LFVNRSLIK 191
R L P+E L + L+ + ++ SL E P + IM+ + + + + +
Sbjct: 82 RGGTLTPDELLQIRDTLKAARYVKQSLLEGKVE--------TPHLKGIMESVLLPKGIEE 133
Query: 192 SIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIH 249
I + + EDG + D ASP L + R + L+ ++ + ++ +IRN + + + + ++
Sbjct: 134 EISRCITEDGQVADQASPLLTELRRGIGRLQSRIRETLEGIIRNPSYQKILQDPIITQRS 193
Query: 250 GRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLA 307
R + + + +F+G++ S+SG IEP++ V L +EL++ + + +LL
Sbjct: 194 ERYVVPVKQEYRQAFQGIVHDQSASGATLFIEPMTVVNLGNELREVILKEQREVQRILLL 253
Query: 308 LTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEP-VTS 366
L+ +++ +++ I + + ++D + A+A S +P + Q++ P +T
Sbjct: 254 LSARVEGEVEAIAETHEALARVDFILAKAHLSEGMNAGAPILTDKQEISLVQARHPLLTG 313
Query: 367 KV 368
KV
Sbjct: 314 KV 315
>gi|254974324|ref|ZP_05270796.1| putative DNA mismatch repair protein [Clostridium difficile
QCD-66c26]
gi|255091720|ref|ZP_05321198.1| putative DNA mismatch repair protein [Clostridium difficile CIP
107932]
gi|255313448|ref|ZP_05355031.1| putative DNA mismatch repair protein [Clostridium difficile
QCD-76w55]
gi|255516136|ref|ZP_05383812.1| putative DNA mismatch repair protein [Clostridium difficile
QCD-97b34]
gi|255649232|ref|ZP_05396134.1| putative DNA mismatch repair protein [Clostridium difficile
QCD-37x79]
gi|260682406|ref|YP_003213691.1| DNA mismatch repair protein [Clostridium difficile CD196]
gi|260686005|ref|YP_003217138.1| DNA mismatch repair protein [Clostridium difficile R20291]
gi|384359986|ref|YP_006197838.1| DNA mismatch repair protein [Clostridium difficile BI1]
gi|260208569|emb|CBA61251.1| putative DNA mismatch repair protein [Clostridium difficile CD196]
gi|260212021|emb|CBE02571.1| putative DNA mismatch repair protein [Clostridium difficile R20291]
Length = 792
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 143/392 (36%), Positives = 222/392 (56%), Gaps = 31/392 (7%)
Query: 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD 508
I++ R LVITGPNTGGKT+ +KTVGL +M +SGLHI + + + +D+VFADIGD
Sbjct: 322 IYLGRDFHTLVITGPNTGGKTVTIKTVGLFALMTQSGLHIPADYGSSMCVYDNVFADIGD 381
Query: 509 EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
EQS+ QSLSTFS H+ I +I+ T+ SLV+ DE+GAGT+P+EG AL +++LE G
Sbjct: 382 EQSIEQSLSTFSSHMTNIVSILQNVTADSLVIFDELGAGTDPVEGAALAIAVLEDINSVG 441
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+ IATTH+ ELK + ENA +EFD L PTYK+L GVPG+S+A I+ +LGL
Sbjct: 442 A-KCIATTHYSELKNYALTKPGVENAAVEFDIETLSPTYKLLIGVPGKSNAFEISRKLGL 500
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK 688
V+ A++ + + +V+ +E+ + + +E EA L + K + K
Sbjct: 501 SDYVISRAKEYINTENIALEDVLQNVEKNRIKAVEDREEAER---LKEEIEKLKVEYDEK 557
Query: 689 ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL 748
LE SQR + ++K A + A S++ ++ +++ + R+L +RA + + + L
Sbjct: 558 -LEKLVSQRDKMIEK---AKSEAFSIIRQAKEEVDIIIKELRNLEQERASKEKNRKIEEL 613
Query: 749 HCTKVGKNQHVLTSNFQ--QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHV 806
+ LTS+ Q TV + P S+ +KD+K G+ V V
Sbjct: 614 --------RKELTSSMGSLQPTVKSMIVPK-VSNKEIKDLKP------------GEEVKV 652
Query: 807 SSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKF 838
+ + G+V+ V+ ++E VVQ+G MK + F
Sbjct: 653 ITLNQNGSVVSVDKKRKEAVVQIGIMKMTLPF 684
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 77/348 (22%), Positives = 160/348 (45%), Gaps = 29/348 (8%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSI--NQTYQDSLRLLDETNAAIEMQ-K 108
+SLRVLE++K+ + A +SLG L + ++ N + + +L+ET+ A + K
Sbjct: 4 KSLRVLEYNKIIDLLKKKASSSLG----LKYIENLVPNTDFVEVKSMLEETSEAQSIIIK 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
GS L+ + ++ ++ + L P + + L+ + L+ SL ++ +ED +
Sbjct: 60 RGSVGLE----GIHDIEDKVKRAYIGASLDPGSLIMIADTLRVARRLRNSLSSSDEEDFN 115
Query: 169 LYIRFMPLTQMIMQ-LFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
P+ Q + L+V + + I + + I D+AS L+ R ++ + +
Sbjct: 116 -----YPIIQSLSNSLYVYKDIEDQIYNAIISEVEISDNASSTLRDIRRRIAQKNQSIRS 170
Query: 228 LMDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ +I + + + + S+ G R + ++ S G++ SSSG IEP++
Sbjct: 171 KLNSIISSTTYQKYLQDAIISLRGDRFVVPVKSEYRSQVAGIVHDQSSSGATLFIEPMTI 230
Query: 284 VPLNDELQQARASVTKAEEDVL---LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
V +N+EL+Q + + E +L A+ ++ DL +++L +LD ++ S+
Sbjct: 231 VEMNNELRQLKLGEQEEIERILSEISAMVGEVSEDLISNQEILG---RLDFAFSKGKLSI 287
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL 388
G P + + + P+ K TIYL + +H L++
Sbjct: 288 QMRGIEPTLNEDKYLNIKNGRHPLLDKKKVVAN--TIYLGRDFHTLVI 333
>gi|260587418|ref|ZP_05853331.1| DNA mismatch repair protein MutS [Blautia hansenii DSM 20583]
gi|260542285|gb|EEX22854.1| DNA mismatch repair protein MutS [Blautia hansenii DSM 20583]
Length = 792
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 215/807 (26%), Positives = 367/807 (45%), Gaps = 144/807 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGRE--ATLTQLWSINQTYQDSLRLLDETNAAIEMQKH 109
++L+ LE+ K+ + +FA +S G++ LT L ++N+ + ++ + A + +
Sbjct: 4 KALKTLEYSKIIQMLENFATSSCGKDLCRNLTPLDNLNE-----IEIMQQETADALARIY 58
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR---AAIKED 166
SL GV ++ +++ + S L E L++ +LL+ + + R A K+D
Sbjct: 59 QKGSLSFGGV--KDIRGSLKRLEIGSTLGTGELLSLCSLLENTNRAKAYARRENAEEKQD 116
Query: 167 A--DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
+ ++ PLT + ++ I + + + I D AS LKQ R ++ K
Sbjct: 117 SLDGMFEILQPLTPLALE----------IRRCILSEEEIADDASAGLKQIRRSMKNTNDK 166
Query: 225 LYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLLSSSSGIGSVI--EPL 281
++ + + L V ++ +GR CI A+ ++ S GS + EP+
Sbjct: 167 IHSQLSSYVSGSARTYLQDAVVTMRNGRYCIPVKAEHKGHVPGMIHDQSSTGSTVFVEPM 226
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ V LN++L++ E +L L++ +L+ IE L + QLD + ARA + +
Sbjct: 227 AIVKLNNDLRELEVKEQAEIEIILSNLSQYAAENLEAIEDNLKVMTQLDFIFARALLAKA 286
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
T P + I L KA HPL+ +HK
Sbjct: 287 QNATEPRF----------------------NTKGIIDLKKARHPLI-DKHK--------- 314
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
VPID+ + +LV+T
Sbjct: 315 ------------------------------------------VVPIDVRLGEDFDLLVVT 332
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ LKT+GL +M +SGLHI + + +++ F V+ADIGDEQS+ QSLSTFS
Sbjct: 333 GPNTGGKTVSLKTIGLLTLMGQSGLHIPAFDNSRLSIFKEVYADIGDEQSIEQSLSTFSS 392
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+ + I ++ SLVL DE+GAGT+P EG AL +++L G + T+ATTH+ EL
Sbjct: 393 HMTNVVRFIEKADRDSLVLFDELGAGTDPTEGAALAIAILSHLHAQG-IRTMATTHYSEL 451
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K S ENA EFD L+PTY++L G+PG+S+A I+ +LGLP ++ A++
Sbjct: 452 KVYALSTHGVENASCEFDVETLRPTYRLLIGIPGKSNAFAISGKLGLPSYIIDKAKEQIS 511
Query: 642 AASAEINEVIIEMERF-KTQFLEHVHEARH---FLMLSRNLHK---NLLRTRRKILEHCA 694
+V+ +E+ KT E AR+ L + L + L + + +IL
Sbjct: 512 QEDESFEDVLSTLEQSRKTIEAEEAEIARYKTEIESLKKQLEEKQDKLEQRKERILRDAN 571
Query: 695 SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG 754
+ R +++ + A + +K+ ++ + A+ L KR+ +LR Q+ G
Sbjct: 572 EEAHRILREAKEYADQTMKIFNKAGKE----SMSAKELEQKRS-ELRKKMDQT------G 620
Query: 755 KNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGT 814
K + T +++T+ KDI ++GD V V S KGT
Sbjct: 621 KKMALKTPEKKKSTL------------TAKDI------------SLGDAVKVLSLNVKGT 656
Query: 815 VIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+ +K + VQ+G ++ + +D+
Sbjct: 657 ISSKPDAKGMVFVQMGILRSKVHLSDL 683
>gi|341820105|emb|CCC56337.1| mutS2 protein [Weissella thailandensis fsh4-2]
Length = 795
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 148/421 (35%), Positives = 225/421 (53%), Gaps = 45/421 (10%)
Query: 432 SEMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKS 484
+E V L+ HP VP DI I +++TGPNTGGKTI LKT+GL +MA+S
Sbjct: 298 AENHVRLLKARHPLLDPDKVVPNDITIGEDYSAIIVTGPNTGGKTITLKTLGLLQIMAQS 357
Query: 485 GLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEI 544
G I ++EY+ V F +FADIGDEQS+ QSLSTFS H+ I +I++ SLVL DE+
Sbjct: 358 GFFIPAAEYSSVGIFKEIFADIGDEQSIEQSLSTFSAHMVNITDILAGMDKDSLVLFDEL 417
Query: 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLK 604
GAGT+P EG AL M++L+A E+G+ ++ATTH+ ELK Y+ NA MEFD L+
Sbjct: 418 GAGTDPQEGAALAMAILDAVGETGA-YSVATTHYPELKVYGYNRADTINASMEFDIDSLR 476
Query: 605 PTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEH 664
PTYK L G+PGRS+A+ IA+RLGL ++ +A L S E+N++I ++ + L
Sbjct: 477 PTYKFLMGIPGRSNALEIAKRLGLSDTIINSASALTSEDSQELNDMIADLVARRNAVLTQ 536
Query: 665 VHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA----AIARSLVHKSAQ 720
E ++ +R L KN + LE QR + V+ A A AR K
Sbjct: 537 QVELTQKVVENRQL-KNDYEAK---LEAIDKQRAKTVEDAKKEANHIVADARRKTDKIIG 592
Query: 721 QLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASS 780
L A ++ + + A ++H E P+ ++
Sbjct: 593 DLHKMARDGATIKENKLMDAK-GALNAMH-----------------------EEPSPTNN 628
Query: 781 SVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTD 840
+++ K++ +V + VGD V V +G++GT+++ + + VQ+G +K ++ +
Sbjct: 629 RILRKAKKAKQVPLS----VGDTVLVREYGQQGTIVR-QLKDNKFEVQMGILKMVLAGEE 683
Query: 841 I 841
I
Sbjct: 684 I 684
>gi|417751918|ref|ZP_12400172.1| MutS2 family protein [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|333772299|gb|EGL49158.1| MutS2 family protein [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
Length = 778
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 229/400 (57%), Gaps = 43/400 (10%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L PV D+ ++ V+VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + +KV F
Sbjct: 307 LQEPVANDLHFSKDLAVIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILADKGSKVAVFS 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++Q+ + SLVL DE+GAGT+P EG +L M++
Sbjct: 367 GIFADIGDEQSIEQSLSTFSSHMTHIVAILNQADADSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + ++ T+ATTH+ ELK + ENA MEFD + LKPTY+ + GVPGRS+A
Sbjct: 427 LEQLRLT-NIKTMATTHYPELKAYGIETPYVENASMEFDSMSLKPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF---LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+ + S ++N +I ++E+ + L+H+ E N
Sbjct: 486 EIARRLGLAEHIVKEAQNMTDTDS-DVNRIIEQLEKQTLESRKRLDHIREVEQ-----DN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
L N R +K+ + + ++++K A AR +V + L S S L K A
Sbjct: 540 LKFN--RAVKKLYNEFSQAKDKEIEK---ATLEAREIVDLA---LAESDSILNQLHDKAA 591
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL 797
L+P H K Q +Q +K + + + V+K + K+
Sbjct: 592 --LKP------HEVIEAKGQ------LKQLVPEK----SLSQNKVLK------KAKQLRA 627
Query: 798 PNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
P VGD + V+++G++GT++K E ++ QVG +K +K
Sbjct: 628 PRVGDDIIVTAYGQRGTLVK-ELKDKKWEAQVGLIKMTLK 666
Score = 42.7 bits (99), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 150/345 (43%), Gaps = 53/345 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLR---LLDETNAAIEMQK 108
E L LE+DK+ ++ +T G L QL +N + D ++ L E A I +++
Sbjct: 4 EILEQLEFDKVKEQFRAYLQTEQGNR-ELDQLEPLN--HHDKIKHYFLEIEEMAGIFVEQ 60
Query: 109 H----GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIK 164
H GS LS + +++R + + L E LAV +LQ S
Sbjct: 61 HHFALGS---------LSDISASMRRLELEADLSIPELLAVKKILQVS-----------A 100
Query: 165 EDADLYIRFMPLT-QMIMQLFVNRSLIKSI---MQVVDEDGSIKDSASPALKQSRGQVQM 220
E + Y+ + Q + +LF N L S+ +Q +++ G ++ ASP L++ R +
Sbjct: 101 EASRFYVDLENVQLQALKRLFENLELFPSLQGSLQAINDGGFVESFASPELEKIRRSISD 160
Query: 221 LERKLYQLMDMLIRNENN---ESLFLEVSSIHGRLCIRTGADQLSFKGLLLS-----SSS 272
E ++ L++ + + ESL ++S +GR + + +F+ + S+S
Sbjct: 161 KEHASRNVLQDLLKKQGDYLSESL---IASRNGRSVLPV---KNTFRNKVAGVVHDISAS 214
Query: 273 GIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVV 332
G IEP + V LN+EL Q +A VL L++ ++ + + LD V
Sbjct: 215 GNTVYIEPRALVQLNEELTQLQADERHEVSRVLQTLSDLIRPHSRVLTNNAWILGHLDFV 274
Query: 333 NARATYSLSFGGTSPNIFLPQ-----DMKRSLTHEPVTSKVSSSE 372
A+ Y T P I + +++ L EPV + + S+
Sbjct: 275 RAKYLYMRDNKATVPAISDDKSLQLLNVRHPLLQEPVANDLHFSK 319
>gi|357162691|ref|XP_003579491.1| PREDICTED: mutS2 protein-like [Brachypodium distachyon]
Length = 927
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 209/690 (30%), Positives = 330/690 (47%), Gaps = 111/690 (16%)
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGS-IKDSASPAL----KQSRGQVQMLERKLY 226
R+ PL ++ L++ I +D + S + D AS L K+ R +++LE L
Sbjct: 193 RYSPLLDILQDCDFLTELVQMIEFCLDSNLSMVLDRASEKLGTIRKERRSNIEILESLLR 252
Query: 227 QLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQ--LSFKGLLLSSS-SGIGSVIEPLSA 283
+ + +S V+ R+C+ A L G++LSSS SG +EP A
Sbjct: 253 DASMKIFQAGGVDSPL--VTKRRSRMCVGVKASHKHLLPGGIVLSSSGSGATYFMEPRDA 310
Query: 284 VPLNDELQQARASVTKAEEDVLLAL-TEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
V LN+ ++ +S + EE +L L T ++ +I ++ I++LD+ AR +Y+L
Sbjct: 311 VKLNN-MEVKLSSDERTEELAVLGLLTSRIADSRMKIRHLMGKIMELDLACARGSYALWI 369
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
G P D S +P + ++++++ HPLLL+Q +
Sbjct: 370 NGVRPAF---SDRDNSGQLDPSS--------DFSVFIDGIQHPLLLEQSF--------GI 410
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
+TE+ + +L E VS++ PVP+D+ + TR++VI+G
Sbjct: 411 AKGSTEVGKGQL----------------SEEHPVSSM----PVPLDMHVKSDTRIVVISG 450
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKT +KT+GLA +M+K+G+ + K+PWFD V ADIGD QSL SLSTFSG+
Sbjct: 451 PNTGGKTATMKTLGLATLMSKAGMFFPAKGSPKLPWFDQVLADIGDHQSLENSLSTFSGN 510
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL-LTIATTHHGEL 581
+ ++ I+ + SLVL+DEIG+GT+P EG +L S+L+ A G L L I TTH+ +L
Sbjct: 511 ISRLRKIVQVVSRDSLVLIDEIGSGTDPSEGVSLSTSILKYLA--GRLNLAIVTTHYADL 568
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
LK + FENA MEF LKPTY+ILWG G S+A++IA+ +G V+ A++
Sbjct: 569 SRLKAVDGRFENAAMEFCLETLKPTYRILWGSTGNSNALSIAKSIGFDQKVLDRAQE--- 625
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
+ + L + R L L+ +LL R +LE A++
Sbjct: 626 ---------------WVEKLLPDKQKERQGL-----LYGSLL-DERNLLESQANE----- 659
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL-HCTKVGKNQ-HV 759
A S V ++C A + R LR SQ + H K+ K+Q +
Sbjct: 660 ------VASVLSEVEVLYNEICLEADD----LDNRVAALRARESQKVQHELKLVKSQMDL 709
Query: 760 LTSNFQ-QTTVDKVEH------PATASSSVVKDIKQSPRV-------KRTELPNVGDLVH 805
+ NF+ Q K+E A AS++ + Q K + +P +GD V+
Sbjct: 710 IIRNFEVQLKNSKLEQYNSVMKKAEASTASLAAAHQPTEFAFSDDENKSSYVPQIGDKVY 769
Query: 806 VSSFGKK--GTVIKVEPSKEEIVVQVGNMK 833
V G TV+++ +VQ G +K
Sbjct: 770 VEGLGGGSLATVVEILSEDGSCMVQYGKIK 799
>gi|386317717|ref|YP_006013881.1| DNA mismatch repair protein [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410495667|ref|YP_006905513.1| DNA mismatch repair protein mutS [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|323128004|gb|ADX25301.1| DNA mismatch repair protein [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410440827|emb|CCI63455.1| DNA mismatch repair protein mutS [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 778
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 229/400 (57%), Gaps = 43/400 (10%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L PV D+ ++ V+VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + +KV F
Sbjct: 307 LQEPVANDLHFSKDLAVIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILADKGSKVAVFS 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++Q+ + SLVL DE+GAGT+P EG +L M++
Sbjct: 367 GIFADIGDEQSIEQSLSTFSSHMTHIVAILNQADADSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + ++ T+ATTH+ ELK + ENA MEFD + LKPTY+ + GVPGRS+A
Sbjct: 427 LEQLRLT-NIKTMATTHYPELKAYGIETPYVENASMEFDSMSLKPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF---LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+ + S ++N +I ++E+ + L+H+ E N
Sbjct: 486 EIARRLGLAEHIVKEAQNMTDTDS-DVNRIIEQLEKQTLESRKRLDHIREVEQ-----DN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
L N R +K+ + + ++++K A AR +V + L S S L K A
Sbjct: 540 LKFN--RAVKKLYNEFSQAKDKEIEK---ATLEAREIVDLA---LAESDSILNQLHDKAA 591
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL 797
L+P H K Q +Q +K + + + V+K + K+
Sbjct: 592 --LKP------HEVIEAKGQ------LKQLVPEK----SLSQNKVLK------KAKQLRA 627
Query: 798 PNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
P VGD + V+++G++GT++K E ++ QVG +K +K
Sbjct: 628 PRVGDDIIVTAYGQRGTLVK-ELKDKKWEAQVGLIKMTLK 666
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 150/343 (43%), Gaps = 53/343 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLR---LLDETNAAIEMQKH- 109
L LE+DK+ ++ +T G L QL +N + D ++ L E A I +++H
Sbjct: 6 LEQLEFDKVKEQFRAYLQTEQGNR-ELDQLEPLN--HHDKIKHYFLEIEEMAGIFVEQHH 62
Query: 110 ---GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
GS LS + +++R + + L E LAV +LQ S E
Sbjct: 63 FALGS---------LSDISASMRRLELEADLSIPELLAVKKILQVS-----------AEA 102
Query: 167 ADLYIRFMPLT-QMIMQLFVNRSLIKSI---MQVVDEDGSIKDSASPALKQSRGQVQMLE 222
+ Y+ + Q + +LF N L S+ +Q +++ G ++ ASP L++ R + E
Sbjct: 103 SRFYVDLENVQLQALKRLFENLELFPSLQGSLQAINDGGFVESFASPELEKIRRSISDKE 162
Query: 223 RKLYQLMDMLIRNENN---ESLFLEVSSIHGRLCIRTGADQLSFKGLLLS-----SSSGI 274
++ L++ + + ESL ++S +GR + + +F+ + S+SG
Sbjct: 163 HASRNVLQDLLKKQGDYLSESL---IASRNGRSVLPV---KNTFRNKVAGVVHDISASGN 216
Query: 275 GSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNA 334
IEP + V LN+EL Q +A VL AL++ ++ + + LD + A
Sbjct: 217 TVYIEPRALVQLNEELTQLQADERHEVSRVLQALSDLIRPHSRALTNNAWILGHLDFIRA 276
Query: 335 RATYSLSFGGTSPNIFLPQ-----DMKRSLTHEPVTSKVSSSE 372
+ Y T P I + +++ L EPV + + S+
Sbjct: 277 KYLYMRDNKATVPAISDDKSLQLLNVRHPLLQEPVANDLHFSK 319
>gi|251783280|ref|YP_002997585.1| recombination inhibitory protein MutS2 [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|242391912|dbj|BAH82371.1| recombination inhibitory protein MutS2 [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
Length = 778
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 229/400 (57%), Gaps = 43/400 (10%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L PV D+ ++ V+VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + +KV F
Sbjct: 307 LQEPVANDLHFSKDLAVIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILADKGSKVAVFS 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++Q+ + SLVL DE+GAGT+P EG +L M++
Sbjct: 367 GIFADIGDEQSIEQSLSTFSSHMTHIVAILNQADADSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + ++ T+ATTH+ ELK + ENA MEFD + LKPTY+ + GVPGRS+A
Sbjct: 427 LEQLRLT-NIKTMATTHYPELKAYGIETPYVENASMEFDSMSLKPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF---LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+ + S ++N +I ++E+ + L+H+ E N
Sbjct: 486 EIARRLGLAEHIVKEAQNMTDTDS-DVNRIIEQLEKQTLESRKRLDHIREVEQ-----DN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
L N R +K+ + + ++++K A AR +V + L S S L K A
Sbjct: 540 LKFN--RAVKKLYNEFSQAKDKEIEK---ATLEAREIVDLA---LAESDSILNQLHDKAA 591
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL 797
L+P H K Q +Q +K + + + V+K + K+
Sbjct: 592 --LKP------HEVIEAKGQ------LKQLVPEK----SLSQNKVLK------KAKQLRA 627
Query: 798 PNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
P VGD + V+++G++GT++K E ++ QVG +K +K
Sbjct: 628 PRVGDDIIVTAYGQRGTLVK-ELKDKKWEAQVGLIKMTLK 666
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 145/344 (42%), Gaps = 55/344 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLR---LLDETNAAIEMQKH- 109
L LE+DK+ ++ +T G L QL +N + D ++ L E A I +++H
Sbjct: 6 LEQLEFDKVKEQFRAYLQTEQGNR-ELDQLEPLN--HHDKIKHYFLEIEEMAGIFVEQHH 62
Query: 110 ---GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
GS LS + +++R + + L E LAV +LQ S E
Sbjct: 63 FALGS---------LSDISASMRRLELEADLSIPELLAVKKILQVS-----------AEA 102
Query: 167 ADLYIRFMPLT-QMIMQLFVNRSLIKSI---MQVVDEDGSIKDSASPALKQSRGQVQMLE 222
+ Y+ + Q + +LF N L S+ +Q +++ G ++ ASP L++ R + E
Sbjct: 103 SRFYVDLENVQLQALKRLFENLELFPSLQGSLQAINDGGFVESFASPELEKIRRSISDKE 162
Query: 223 RKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLS---------SSSG 273
++ L++ + + +L S I GR G L K + S+SG
Sbjct: 163 HASRNVLQDLLKKQGD---YLSESLIAGR----NGRSVLPVKNTFRNKVAGVVHDISASG 215
Query: 274 IGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVN 333
IEP + V LN+EL Q +A VL AL++ ++ + + LD +
Sbjct: 216 NTVYIEPRALVQLNEELTQLQADERHEVSRVLQALSDLIRPHSRALTNNAWILGHLDFIR 275
Query: 334 ARATYSLSFGGTSPNIFLPQ-----DMKRSLTHEPVTSKVSSSE 372
A+ Y T P I + +++ L EPV + + S+
Sbjct: 276 AKYLYMRDNKATVPAISDDKSLQLLNVRHPLLQEPVANDLHFSK 319
>gi|110799497|ref|YP_696563.1| recombination and DNA strand exchange inhibitor protein
[Clostridium perfringens ATCC 13124]
gi|123344633|sp|Q0TP77.1|MUTS2_CLOP1 RecName: Full=MutS2 protein
gi|110674144|gb|ABG83131.1| MutS2 family protein [Clostridium perfringens ATCC 13124]
Length = 786
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 201/698 (28%), Positives = 327/698 (46%), Gaps = 120/698 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
LRVLE++K+ V +A T +E L L + Y D L+ET A++ + + G+
Sbjct: 6 LRVLEFNKIKELVKGYAITKSAKEMVL-DLKPYDSVY-DVKEHLEETKEALDILMRKGNP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L VK AI + L++ LL+ L ++ + + D R
Sbjct: 64 PFE----GLYDVKEAITRAEKGG------VLSIEGLLRIGNMLSVTRKLS-----DFLAR 108
Query: 173 FMP------LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
L M L V R + +I + + + I DSAS L R ++ +
Sbjct: 109 KEEEEEHRILEGMREGLIVLRGVESAISKAIVSEDEIADSASDKLYSIRRSLKEKNSSIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ ++R+ N + L + ++ G R I A+ S GL+ SS+G IEP +
Sbjct: 169 DKVNSIVRS-NAQYLQDSLYTVRGDRYVIPVKAEYKSQVPGLVHDQSSTGATLFIEPTAL 227
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+E+++ E +L L+ + ++D I+ N I++LD + A+A Y G
Sbjct: 228 VNLNNEIKELMLKERAEIERILAELSALVYKNIDVIKVNFNIIVELDFIFAKAKYGSDLG 287
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
GT P + E I L A HPL+
Sbjct: 288 GTMPIV----------------------NEEGVIDLMDARHPLI---------------- 309
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
P + VS+ DI++ R+ L+ITGP
Sbjct: 310 ---------------------------PKDKVVSS---------DIYLGREFSTLLITGP 333
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT GL +M SGL I +SE + + +F+ +FADIGDEQS+ QSLSTFS H+
Sbjct: 334 NTGGKTVTLKTTGLIELMGLSGLLIPASENSSISFFEEIFADIGDEQSIEQSLSTFSSHM 393
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I I+ ++ ++S VL DE+GAGT+P EG AL +S+LE G + ++TTH+ ELK
Sbjct: 394 TNIVKIMEKANNKSFVLFDELGAGTDPTEGAALAISILENLRARGCRI-MSTTHYSELKG 452
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
+ ENA +EF+ L+PTY++L GVPG+S+A I+ RLGL V++ A+++
Sbjct: 453 YALKTENVENASVEFNVETLRPTYRLLIGVPGKSNAFEISRRLGLKDNVIEEAKKVISTE 512
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
S + ++I + + + ++ ++AR +L + K + R K ++F +++
Sbjct: 513 SLQFEDLI---QSLQEKSIKAENDAREAAILRNDAEK--YKNRYK-------EKFERIES 560
Query: 704 ISD-AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ D A AR + A+Q+ SA + + K + L
Sbjct: 561 VRDNVYADAR----REAKQILDSAKEEADAILKNMRDL 594
>gi|392375798|ref|YP_003207631.1| MutS2 protein [Candidatus Methylomirabilis oxyfera]
gi|258593491|emb|CBE69830.1| putative MutS2 protein [Candidatus Methylomirabilis oxyfera]
Length = 804
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 186/602 (30%), Positives = 291/602 (48%), Gaps = 89/602 (14%)
Query: 47 SRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNA-AIE 105
+R+ +L VLEW + V++ A + LGRE L T +D+ ++ +E +
Sbjct: 2 NRIDQHTLEVLEWPAIQARVAARAGSPLGRE--LAHAIHPLPTLEDAQKVRNEIEEFRVL 59
Query: 106 MQKHGSCSLDLTGVDLSLVKSAIRE-VRRASPLRPNEALAVVALLQFSETLQLSLRAAIK 164
+ + + D IRE V+R+ P LA + ++ +L+ + AAI+
Sbjct: 60 LAREVALPFDQL--------HDIRESVQRSRP--EGAVLAAIDFVRIVTSLETA--AAIR 107
Query: 165 EDADLYIRFMP-LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
P L ++ +L + LI I ++ DG +KD+AS L Q R + L
Sbjct: 108 HTIVRSRERCPRLHAIVSRLDDHTDLIGEIHATIEADGEVKDTASQRLNQLRIGLHQLRN 167
Query: 224 KLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLSSS-SGIGSVIE 279
++ + L+ + E V+ + R I + + KG++ S SG+ +E
Sbjct: 168 LIHARLQSLLMTPTLQPYITESLVTLRNDRYVIPVKPNYRTVLKGVVQDRSISGVTIFLE 227
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
P V LN++L+ + S + VL ALT ++ D + + +LDV A A ++
Sbjct: 228 PQEVVELNNQLRLLQRSEEEEIRRVLAALTATLRATADAVLSTMLLAAELDVRCAAARFA 287
Query: 340 LSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAW 399
+L PV K + + L +A HPLLL++
Sbjct: 288 -----------------DTLHCAPVALKEAGP-----LLLREAGHPLLLER--------- 316
Query: 400 KDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLV 459
+ A + +PID+ + L+
Sbjct: 317 ------------------------------------IDAAGIHRTIPIDLRLGDSFDALL 340
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
ITGPNTGGKT+ LKT GL +MA++GLH+ +S ++VP+F V ADIGDEQS+ QSLSTF
Sbjct: 341 ITGPNTGGKTVALKTAGLLSLMAQAGLHLPASPDSEVPFFSGVLADIGDEQSIEQSLSTF 400
Query: 520 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579
S H+ QI I+ + +LVLLDE+GAGT+P+EG LG+++L+A E G+L+ +ATTH
Sbjct: 401 SSHIGQIRRILDAAQPGTLVLLDELGAGTDPVEGACLGIAILDALLERGALV-VATTHLD 459
Query: 580 ELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 639
+K YS+ EN C+EFD L+P YK+L G+ GRS + IA R+GLP V+Q A +L
Sbjct: 460 AIKAYAYSHPRIENGCVEFDLDTLRPLYKLLIGLSGRSHGLAIASRVGLPLRVIQQAERL 519
Query: 640 YG 641
G
Sbjct: 520 LG 521
>gi|304385233|ref|ZP_07367578.1| DNA mismatch repair protein MutS [Pediococcus acidilactici DSM
20284]
gi|304328440|gb|EFL95661.1| DNA mismatch repair protein MutS [Pediococcus acidilactici DSM
20284]
Length = 786
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 190/612 (31%), Positives = 294/612 (48%), Gaps = 103/612 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L VLE++K+ ++V F T G + L QL + DS ++ NA E
Sbjct: 7 LEVLEYEKVKNAVKQFIATENGAKE-LRQLVPMT----DSAKV---QNALKET------- 51
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQL-----SLRAAIKEDAD 168
L V++ VKS I R P + L + A L E Q+ + R I AD
Sbjct: 52 --LDAVNIYRVKSGIPIPRLEDIDEPLQRLKIDATLNGREIAQIGRVLRATREVINFFAD 109
Query: 169 L---YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
L + L ++ QL + + + ++ +G + +SAS L++ R + +E ++
Sbjct: 110 LPDTEVTVETLNGVVDQLETIPEIEERLNSSIEGNGHLLNSASSELRRIRAAITRVEGEI 169
Query: 226 YQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLS 282
Q M+ R + L + +I R I AD S F G++ SSSG +EP +
Sbjct: 170 RQRMEKFTRGSQAKYLSEPIVTIRSERYVIPVRADSRSRFGGVVHDQSSSGQTLYVEPEA 229
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
V LN++L+Q + + E+ +L L+ + D ++ + LD++NA+A Y+
Sbjct: 230 VVDLNNQLRQEQVAEVHEEQRILQELSALIAPYADTLKDNSKVLGHLDLLNAKAQYAHKL 289
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
T P ++S++ R I L +A HPL+
Sbjct: 290 KATEP-------------------QISTNNR---INLRQARHPLI--------------- 312
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
P ++ VP DI + + LVITG
Sbjct: 313 ---------------------------DPKKV----------VPNDIRLGGEYSTLVITG 335
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKTI LKTVGL +MA+SG+ I ++E + V F+ +FADIGDEQS+ Q+LSTFS H
Sbjct: 336 PNTGGKTITLKTVGLLQLMAQSGIFIPANENSTVRVFEEIFADIGDEQSIEQNLSTFSSH 395
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
+ +I+ +SL L DE+GAGT+P EG AL +++L+ + G+ ++I TTH+ ELK
Sbjct: 396 MDNTIHILEHLNERSLALFDELGAGTDPKEGAALAIAILDRVRQRGA-VSITTTHYPELK 454
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642
T Y NA MEFD L+PTYK+L G+PG+S+A I+ RLGL ++ AR L
Sbjct: 455 TYGYERSGTINASMEFDVDTLQPTYKLLLGIPGQSNAFEISRRLGLDEDIITQARGLVDQ 514
Query: 643 ASAEINEVIIEM 654
S ++N +I ++
Sbjct: 515 DSQDLNNMIKDL 526
>gi|312127327|ref|YP_003992201.1| muts2 family protein [Caldicellulosiruptor hydrothermalis 108]
gi|311777346|gb|ADQ06832.1| MutS2 family protein [Caldicellulosiruptor hydrothermalis 108]
Length = 787
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/409 (35%), Positives = 229/409 (55%), Gaps = 41/409 (10%)
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
+E VPID+ + ++ VLVITGPNTGGKT+ LKT+GL ++A+SG+ + + E ++V
Sbjct: 307 IEKERVVPIDVHLGKEFDVLVITGPNTGGKTVTLKTIGLFCLLAQSGMFLPADEGSEVCV 366
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
F +FADIGDEQS+ QSLSTFS H+K I I + S +LVLLDEIG+GT+P EG AL
Sbjct: 367 FSKIFADIGDEQSIIQSLSTFSAHMKNIIEITQNADSSTLVLLDEIGSGTDPEEGAALAK 426
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
++L+ GS + +ATTH+GELKT + FENA EFD LKPTY++L G+PG S+
Sbjct: 427 AILKFLYRKGSKV-VATTHYGELKTFAQQEERFENASCEFDINTLKPTYRLLIGIPGMSN 485
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A+ I+ LGL +V+ A+ + E+ ++I EMER + + E + A + + NL
Sbjct: 486 ALYISSNLGLKEEIVELAKSYMSKKTLELTDIINEMERKRKELEEALESANKLKIEAENL 545
Query: 679 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
++L RR+ + R V++ AR V + + V K +
Sbjct: 546 KRSLEEERRRFEAEKQRIKERSVKE-------AREFVQRVEDE-----------VEKLFK 587
Query: 739 QLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR---T 795
+LR A +SL ++ + ++E ++VK I+Q+ + ++ +
Sbjct: 588 ELRKIA-ESLK---------------EKEMLKQLEEKKREYENLVKSIEQASQKEKKLQS 631
Query: 796 ELPN---VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+LP +G V+V SF +G V + SK + V++G MK + +D+
Sbjct: 632 KLPENLRLGQKVYVKSFDAEGFVESLPDSKGNLTVRIGIMKLSVNISDV 680
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 148/300 (49%), Gaps = 20/300 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTY-QDSLRLLDETNAAIEMQKHGS 111
+ R LE+D++ + S A + + + S ++ + Q L ++E I + K+G
Sbjct: 5 TFRALEYDRILEMLISLAHSEPAKRYFQNLVPSTDKDFIQKELDKVEE--CFIYILKYGR 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ L D+SL+ +++ R + L P+ LAV +L+ S+ ++ L A D
Sbjct: 63 PPI-LEFSDISLI---LKKARAQAILTPHGILAVGRILKLSQEVRSYLANA---DGSY-- 113
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L +LF + L I Q I D+ASP LK+ R +++ LE ++ ++
Sbjct: 114 ----LKSSREKLFYLKELTARIDQTFLTPEEILDTASPRLKEIRDRIRRLETRIRDELNR 169
Query: 232 LIRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLN 287
+IR+ + E + ++ G +L + A+ + S KG++ S++G +EP V ++
Sbjct: 170 MIRDHKIQRFLQEPIITVRGDKLLLPVKAEHKDSIKGIIHDQSATGATLFVEPFVCVEIS 229
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
++++ AR+ + E +L L++ + + +EI++ + +LD++ +A ++ F + P
Sbjct: 230 NQIRVARSEEKEEIERILQELSQLISRNYNEIKQNFESLSELDILFTKAQWAHQFRASKP 289
>gi|18310863|ref|NP_562797.1| recombination and DNA strand exchange inhibitor protein
[Clostridium perfringens str. 13]
gi|38604940|sp|Q8XJ80.1|MUTS2_CLOPE RecName: Full=MutS2 protein
gi|18145545|dbj|BAB81587.1| DNA mismatch repair protein [Clostridium perfringens str. 13]
Length = 786
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 202/698 (28%), Positives = 327/698 (46%), Gaps = 120/698 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
LRVLE++K+ V +A T +E L L + Y D L+ET A++ + + G+
Sbjct: 6 LRVLEFNKIKELVKGYAITKSAKEMVL-DLKPYDSVY-DVKEHLEETKEALDILMRKGNP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L VK AI + L++ LL+ L A ++ +D R
Sbjct: 64 PFE----GLYDVKEAITRAEKGG------VLSIEGLLRIGNML-----AVTRKLSDFLAR 108
Query: 173 FMP------LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
L M L V R + +I + + + I DSAS L R ++ +
Sbjct: 109 KEEEEEHRILEGMREGLIVLRGVESAISKAIVSEDEIADSASDKLYSIRRSLKEKNSSIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ ++R+ N + L + ++ G R I A+ S GL+ SS+G IEP +
Sbjct: 169 DKVNSIVRS-NTQYLQDSLYTVRGDRYVIPVKAEYKSQVPGLVHDQSSTGATLFIEPTAL 227
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+E+++ E +L L+ + ++D I+ N I++LD + A+A Y G
Sbjct: 228 VNLNNEIKELMLKERAEIERILAELSVLVYKNIDVIKVNFNIIVELDFIFAKAKYGSDLG 287
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
GT P + E I L A HPL+
Sbjct: 288 GTLPIV----------------------NEEGVIDLMDARHPLI---------------- 309
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
P + VS+ DI++ R+ L+ITGP
Sbjct: 310 ---------------------------PKDKVVSS---------DIYLGREFSTLLITGP 333
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT GL +M SGL I +SE + + +F+ +FADIGDEQS+ QSLSTFS H+
Sbjct: 334 NTGGKTVTLKTTGLIELMGLSGLLIPASENSSISFFEEIFADIGDEQSIEQSLSTFSSHM 393
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I I+ ++ ++S VL DE+GAGT+P EG AL +S+LE G + ++TTH+ ELK
Sbjct: 394 TNIVRIMEKANNKSFVLFDELGAGTDPTEGAALAISILENLRARGCRI-MSTTHYSELKG 452
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
+ ENA +EF+ L+PTY++L GVPG+S+A I+ RLGL V++ A+++
Sbjct: 453 YALKTENVENASVEFNVETLRPTYRLLIGVPGKSNAFEISRRLGLKDNVIEEAKKVISTE 512
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
S + ++I + + + ++ ++AR +L + K + R K ++F +++
Sbjct: 513 SLQFEDLI---QSLQEKSIKAENDAREAAILRNDAEK--YKNRYK-------EKFERIES 560
Query: 704 ISD-AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ D A AR + A+Q+ SA + + K + L
Sbjct: 561 VRDNVYADAR----REAKQILDSAKEEADAILKNMRDL 594
>gi|423082167|ref|ZP_17070762.1| MutS2 family protein [Clostridium difficile 002-P50-2011]
gi|423085790|ref|ZP_17074229.1| MutS2 family protein [Clostridium difficile 050-P50-2011]
gi|357548912|gb|EHJ30766.1| MutS2 family protein [Clostridium difficile 050-P50-2011]
gi|357549417|gb|EHJ31264.1| MutS2 family protein [Clostridium difficile 002-P50-2011]
Length = 792
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 143/392 (36%), Positives = 221/392 (56%), Gaps = 31/392 (7%)
Query: 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD 508
I++ R LVITGPNTGGKT+ +KTVGL +M +SGLHI + + +D+VFADIGD
Sbjct: 322 IYLGRDFHTLVITGPNTGGKTVTIKTVGLFALMTQSGLHIPVDYGSSMCVYDNVFADIGD 381
Query: 509 EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
EQS+ QSLSTFS H+ I +I+ T+ SLV+ DE+GAGT+P+EG AL +++LE G
Sbjct: 382 EQSIEQSLSTFSSHMTNIVSILQNVTADSLVIFDELGAGTDPVEGAALAIAVLEDINSVG 441
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+ IATTH+ ELK + ENA +EFD L PTYK+L GVPG+S+A I+ +LGL
Sbjct: 442 A-KCIATTHYSELKNYALTKSGVENAAVEFDIETLSPTYKLLIGVPGKSNAFEISRKLGL 500
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK 688
V+ A++ + + +V+ +E+ + + +E EA L + + + K
Sbjct: 501 SDYVISRAKEYINTENIALEDVLQNVEKNRIKAVEDREEAER---LKEEIERLKVEYDEK 557
Query: 689 ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL 748
LE SQR + ++K A + A S++ ++ +++ + RSL +RA + + + L
Sbjct: 558 -LEKLVSQRDKMIEK---AKSEAFSIIRQAKEEVDIIIKELRSLEQERASKEKNRKIEEL 613
Query: 749 HCTKVGKNQHVLTSNFQ--QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHV 806
+ LTS+ Q TV + P S+ +KD+K G+ V V
Sbjct: 614 --------RKELTSSMGSLQPTVKSMIVPK-VSNKEIKDLKP------------GEEVKV 652
Query: 807 SSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKF 838
+ + G+V+ V+ ++E VVQ+G MK + F
Sbjct: 653 ITLNQNGSVVSVDKKRKEAVVQIGIMKMTLPF 684
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 160/348 (45%), Gaps = 29/348 (8%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSI--NQTYQDSLRLLDETNAAIEMQ-K 108
+SLRVLE++K+ + A +SLG L + ++ N + + +L+ET+ A + K
Sbjct: 4 KSLRVLEYNKIIDLLKKKASSSLG----LKYIENLVPNTDFVEVKSMLEETSEAQSIIIK 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
GS L+ + ++ ++ + L P + + L+ + L+ SL ++ +ED +
Sbjct: 60 RGSVGLE----GIHDIEDKVKRAYIGASLDPGSLIMIADTLRVARRLRNSLSSSDEEDFN 115
Query: 169 LYIRFMPLTQMIMQ-LFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
P+ Q + L+V + + I + + I D+AS L+ R ++ + +
Sbjct: 116 -----YPIIQSLSNSLYVYKDIEDQIYNAIISEVEISDNASSTLRDIRRRIAQKNQSIRS 170
Query: 228 LMDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ +I + + + + S+ G R + A+ S G++ SSSG IEP++
Sbjct: 171 KLNSIISSTTYQKYLQDAIISLRGDRFVVPVKAEYRSQVAGIVHDQSSSGATLFIEPMTI 230
Query: 284 VPLNDELQQARASVTKAEEDV---LLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
V +N+EL+Q + + E + L A+ ++ DL +++L +LD ++ S+
Sbjct: 231 VEMNNELRQLKLGEQEEIERILSELSAMVGEVSEDLISNQEILG---RLDFAFSKGKLSI 287
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL 388
G P + + + P+ K TIYL + +H L++
Sbjct: 288 QMRGIEPTLNEDKYLNIKNGRHPLLDKKKVVAN--TIYLGRDFHTLVI 333
>gi|188586428|ref|YP_001917973.1| MutS2 family protein [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351115|gb|ACB85385.1| MutS2 family protein [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 796
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/424 (34%), Positives = 227/424 (53%), Gaps = 53/424 (12%)
Query: 433 EMQVSALELAHP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL 486
E ++ ++ HP +P+D+ + + +VITGPNTGGKT+ LK VGL +M +SGL
Sbjct: 295 EKRLEIIKGKHPLLGEDAIPVDVKLGDEFNTMVITGPNTGGKTVSLKMVGLFTLMTQSGL 354
Query: 487 HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGA 546
HI + ++ F+ VFADIGDEQ + QSLSTFS H+ I I+ + S+SL+LLDE+GA
Sbjct: 355 HIPAERGTEMGVFEQVFADIGDEQDIEQSLSTFSSHMSNIVKIVDHANSESLILLDELGA 414
Query: 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPT 606
GT+P EG+AL MSLLE F G +IATTH+ +LK+ ++ + ENA +EFDE L+PT
Sbjct: 415 GTDPTEGSALAMSLLEHFHNLGC-RSIATTHYTQLKSFAHAREGVENASVEFDEETLEPT 473
Query: 607 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEM-ERFKTQFLEHV 665
Y +L GVPG+S+A I+ RLGL ++ NA+ E+ E+I + E+ K+
Sbjct: 474 YNLLIGVPGKSNAFVISRRLGLSDKIISNAKSFLADEEIEVEELITSLTEKEKS------ 527
Query: 666 HEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKIS--------DAAAIARSLVHK 717
S+ + + L R R K+ E +Q ++ ++IS A A ++
Sbjct: 528 ---------SQKMKEELERERAKV-EQVKAQLEQERKEISRKKDEVLQKARRQAEEIISD 577
Query: 718 SAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPAT 777
+ + S +AR + K++ + S + G Q ++ +D +
Sbjct: 578 AKRDAEESLKEARKIAEKKSHKEMAEVSSKVRDKLSGHQQ-----KLREELMD------S 626
Query: 778 ASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
A S + K P G V++S+ K+G +++V K E VQVG MK +
Sbjct: 627 ADSVPLSPEKLKP----------GLTVYISNLDKEGQILQVNHDKGEAEVQVGIMKVNVN 676
Query: 838 FTDI 841
F+DI
Sbjct: 677 FSDI 680
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 138/293 (47%), Gaps = 22/293 (7%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
S+ LE K+ + +++ +E S+N Y + L ET+ A E+
Sbjct: 6 SMDTLELPKIIDQLKKETVSTMTKEICDDLDPSVN--YNEIKTWLKETSEAKEL------ 57
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEA-LAVVALLQFSETLQLSLRAAIKEDADLYI 171
L D+SL +R++R+ L + L L Q SE + +S R D +
Sbjct: 58 ---LAERDISL--RGLRDIRKQLQLAAKDGTLQGPELFQISEIIGVSNRVRKITDDNFQA 112
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ L+ +I +L L K + +DE+G +KDSAS L+ R +++ L+ ++ ++
Sbjct: 113 NYPILSSLISKLPELNHLKKELDDKIDENGEVKDSASVNLRNIRQKIKKLQSQVKTSVNR 172
Query: 232 LIRNENNESLFLE---VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
++++ +L+ V+ + R + A+ Q G++ SSSG+ IEP V
Sbjct: 173 ILQSGEK---YLQDKIVTMRYDRYVVPVKAEYQNMVPGIIHDQSSSGMTVYIEPKEVVEK 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
N+EL+QA+ E +L L++K++ ++ L +++LD + A+ + S
Sbjct: 230 NNELRQAKREEHSELEKILQGLSQKIKGYHYQLHDSLQILVELDFILAKGSLS 282
>gi|147678274|ref|YP_001212489.1| mismatch repair ATPase [Pelotomaculum thermopropionicum SI]
gi|238686642|sp|A5D0W6.1|MUTS2_PELTS RecName: Full=MutS2 protein
gi|146274371|dbj|BAF60120.1| mismatch repair ATPase [Pelotomaculum thermopropionicum SI]
Length = 785
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 149/397 (37%), Positives = 218/397 (54%), Gaps = 30/397 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPIDI + LVITGPNTGGKT+ LKT GL V+MA+SGLHI + E +++ F VFA
Sbjct: 314 VPIDIRLGADFDTLVITGPNTGGKTVALKTAGLLVLMAQSGLHIPAGEGSRLGIFRQVFA 373
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I II ++ SLVLLDE+GAGT+P EG AL S+LE
Sbjct: 374 DIGDEQSIEQSLSTFSSHMNNIVEIIGKAGPDSLVLLDELGAGTDPAEGAALAQSILEKL 433
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+G+ T+ATTH+GELK + + ENA +EFD + L+PTY++L G PGRS+A IA
Sbjct: 434 HSAGA-KTVATTHYGELKDFALTRERVENASVEFDAITLRPTYRLLIGKPGRSNAFEIAA 492
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGLP VV+ AR A + E++ +E+ + + A +R L +
Sbjct: 493 RLGLPEEVVKRARSFLTAEHIQAEELMRSLEKTQQEAEAERRRAAELASEARALKERY-- 550
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
KI AS+R +S AA A++LV + + + + R + + A + R +A
Sbjct: 551 --EKIEADLASKR---ESILSKAAEEAQALVRAARLEAEAAVRELREKMAEEAARERENA 605
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
+ K+ K Q + + TV P A + + G+ V
Sbjct: 606 IREAR-EKLRKLQQRVGRAVPEKTV-----PGEAPAGL----------------RPGEEV 643
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
++ + +KG V++ + E++VQVG +K + ++
Sbjct: 644 FLTRYNQKGYVLEPPGAGGEVLVQVGVIKMNVPLREL 680
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 135/306 (44%), Gaps = 30/306 (9%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
+L+ LE+ K+ +++ + +SLGRE + ++ LD A + Q+ S
Sbjct: 5 ALKRLEYHKVLEQLAACSGSSLGREKIM------------AMEPLDNLQAILRKQEETSE 52
Query: 113 SLDLTGVD-------LSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKE 165
L ++ +++ +R+ + + L P E LAV L T+ R ++
Sbjct: 53 GRKLLRLEPFAEAGGWKDIRAQLRKAGQGAILDPEELLAVADTLTAGRTI----RKFFQD 108
Query: 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
+ Y ++ ++ L L + I + G + D ASP L Q R ++ + ++
Sbjct: 109 RQEQYPLLYEVSSALVSL---PELERKIKNAILPGGEVADGASPELAQIRRRLAAAQAQV 165
Query: 226 YQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPL 281
+ ++ +IR+ + + E V+ GR + + S G++ S+SG IEP+
Sbjct: 166 KEHLEHIIRSPSYQKYLQEPIVTIREGRYVVPVKIEHRSQVPGIVHDQSASGATLFIEPM 225
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ V N+EL++ A+ + + +L L+ + I L + +LD + ARA YS
Sbjct: 226 AVVEKNNELRRLMAAEKREIQRILAELSAGVAQHAGPIGASLEALGELDFIMARARYSQK 285
Query: 342 FGGTSP 347
+P
Sbjct: 286 LDAWAP 291
>gi|169343643|ref|ZP_02864642.1| MutS2 family protein [Clostridium perfringens C str. JGS1495]
gi|169298203|gb|EDS80293.1| MutS2 family protein [Clostridium perfringens C str. JGS1495]
Length = 786
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 202/698 (28%), Positives = 327/698 (46%), Gaps = 120/698 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
LRVLE++K+ V +A T +E L L + Y D L+ET A++ + + G+
Sbjct: 6 LRVLEFNKIKELVKGYAITKSAKEMVL-DLKPYDSVY-DVKEHLEETKEALDILMRKGNP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L VK AI + L++ LL+ L A ++ +D R
Sbjct: 64 PFE----GLYDVKEAITRAEKGG------VLSIEGLLRIGNML-----AVTRKLSDFLAR 108
Query: 173 FMP------LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
L M L V R + +I + + + I DSAS L R ++ +
Sbjct: 109 KEEEEEHRILEGMREGLIVLRGVESAISKAIVSEDEIADSASDKLYSIRRSLKEKNSSIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ ++R+ N + L + ++ G R I A+ S GL+ SS+G IEP +
Sbjct: 169 DKVNSIVRS-NAQYLQDSLYTVRGDRYVIPVKAEYKSQVPGLVHDQSSTGATLFIEPTAL 227
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+E+++ E +L L+ + ++D I+ N I++LD + A+A Y G
Sbjct: 228 VNLNNEIKELMLKERAEIERILAELSALVYKNIDVIKVNFNIIVELDFIFAKAKYGSDLG 287
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
GT P + E I L A HPL+
Sbjct: 288 GTLPIV----------------------NEEGVIDLMDARHPLI---------------- 309
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
P + VS+ DI++ R+ L+ITGP
Sbjct: 310 ---------------------------PKDKVVSS---------DIYLGREFSTLLITGP 333
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT GL +M SGL I +SE + + +F+ +FADIGDEQS+ QSLSTFS H+
Sbjct: 334 NTGGKTVTLKTTGLIELMGLSGLLIPASENSSISFFEEIFADIGDEQSIEQSLSTFSSHM 393
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I I+ ++ ++S VL DE+GAGT+P EG AL +S+LE G + ++TTH+ ELK
Sbjct: 394 TNIVKIMEKANNKSFVLFDELGAGTDPTEGAALAISILENLRARGCRI-MSTTHYSELKG 452
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
+ ENA +EF+ L+PTY++L GVPG+S+A I+ RLGL V++ A+++
Sbjct: 453 YALKTENVENASVEFNVETLRPTYRLLIGVPGKSNAFEISRRLGLKDNVIEEAKKVISTE 512
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
S + ++I + + + ++ ++AR +L + K + R K ++F +++
Sbjct: 513 SLQFEDLI---QSLQEKSIKAENDAREAAILRNDAEK--YKNRYK-------EKFERIES 560
Query: 704 ISD-AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ D A AR + A+Q+ SA + + K + L
Sbjct: 561 VRDNVYADAR----REAKQILDSAKEEADAILKNMRDL 594
>gi|423683336|ref|ZP_17658175.1| recombination and DNA strand exchange inhibitor protein [Bacillus
licheniformis WX-02]
gi|383440110|gb|EID47885.1| recombination and DNA strand exchange inhibitor protein [Bacillus
licheniformis WX-02]
Length = 785
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 150/403 (37%), Positives = 217/403 (53%), Gaps = 33/403 (8%)
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
L L VP DI + + +VITGPNTGGKT+ LKT+GL MMA+SGLH+ + E ++
Sbjct: 312 LPLDEVVPNDIELGGEYTTIVITGPNTGGKTVTLKTLGLLTMMAQSGLHVPAEEGSETAV 371
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
FD VFADIGDEQS+ QSLSTFS H+ I +I+ T SLVL DE+GAGT+P EG AL +
Sbjct: 372 FDQVFADIGDEQSIEQSLSTFSSHMVNIVDILKDMTENSLVLFDELGAGTDPQEGAALAI 431
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
S+L+ ++G+ + IATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+
Sbjct: 432 SILDEVCQTGARV-IATTHYPELKAYGYNRENVINASVEFDIDTLSPTYKLLIGVPGRSN 490
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A I++RLGLP ++ A+ A E++ +I +E K + + E + L
Sbjct: 491 AFEISKRLGLPDYLIGRAKAEMTAEHNEVDTMIASLEDSKKRAEAELKETEAIRAEAEAL 550
Query: 679 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
H++L Q+ + Q+I D + K+A+++ + +A ++
Sbjct: 551 HRDL------------QQQISEWQEIKD--KLYEEAEQKAAEKVKAAMKEADDII----- 591
Query: 739 QLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP 798
QSL K H + + K A S K Q KR P
Sbjct: 592 -------QSLRMI---KEDHKAFKDHELIEAKKRLEEAVPSFEKAKKPAQKKTDKRELKP 641
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KGT+++ + E VQ+G +K +K D+
Sbjct: 642 --GDEVKVLTFGQKGTLLE-KTGAAEWNVQIGILKMKVKEKDL 681
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 126/264 (47%), Gaps = 15/264 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETN-AAIEMQKHGS 111
+L LE+ K+ ++ A +SLG+E L +++ ++ +L +E + A ++ GS
Sbjct: 5 ALSALEFHKVKEQLTEHAASSLGKEMLLE--LKPSRSLEEVKKLQEEVDEAGTVLRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++ A+R S L P E + LL ++ ++ L ++ ++
Sbjct: 63 APFG----GLTDIRKALRRAEIGSILSPAELTEISGLLYAAKQMKHFLEGLFEDGVEIPY 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L Q +L L + I +D+ G + D AS L+ R Q++ LE ++ ++
Sbjct: 119 ----LHQYAEKLIPLSELERDINSCIDDHGEVLDHASETLRGIRTQLRTLESRIRDRLES 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R+ + + + + ++ + R I + S G ++ SSSG IEP + V +N
Sbjct: 175 MLRSSSAQKMLSDTIITIRNDRFVIPVKQEYRSSYGGIVHDQSSSGATLFIEPQAIVDMN 234
Query: 288 DELQQARASVTKAEEDVLLALTEK 311
+ L+QA+ + + E +L LTEK
Sbjct: 235 NALRQAKVNEKQEIERILRVLTEK 258
>gi|110803296|ref|YP_699161.1| recombination and DNA strand exchange inhibitor protein
[Clostridium perfringens SM101]
gi|122956595|sp|Q0SRU6.1|MUTS2_CLOPS RecName: Full=MutS2 protein
gi|110683797|gb|ABG87167.1| MutS2 family protein [Clostridium perfringens SM101]
Length = 786
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 200/698 (28%), Positives = 327/698 (46%), Gaps = 120/698 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
LRVLE++K+ V +A T +E L L + Y D L+ET A++ + + G+
Sbjct: 6 LRVLEFNKIKELVKGYAITKSAKEMVL-DLKPYDSVY-DVKEHLEETKEALDILMRKGNP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L VK AI + L++ LL+ L ++ + + D R
Sbjct: 64 PFE----GLYDVKEAITRAEKGG------VLSIEGLLRIGNMLSVTRKLS-----DFLAR 108
Query: 173 FMP------LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
L M L V R + +I + + + I DSAS L R ++ +
Sbjct: 109 KEEEEEHRILEGMREGLIVLRGVESAISKAIVSEDEIADSASDKLYSIRRSLKEKNSSIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ ++R+ N + L + ++ G R I A+ S GL+ SS+G IEP +
Sbjct: 169 DKVNSIVRS-NAQYLQDSLYTVRGDRYVIPVKAEYKSQVPGLVHDQSSTGATLFIEPTAL 227
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+E+++ E +L L+ + ++D I+ N I++LD + A+A Y G
Sbjct: 228 VNLNNEIKELMLKERAEIERILAELSALVYKNIDVIKVNFNIIVELDFIFAKAKYGSDLG 287
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
GT P + E I L A HPL+
Sbjct: 288 GTMPIV----------------------NEEGVIDLMDARHPLI---------------- 309
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
P + VS+ DI++ R+ L+ITGP
Sbjct: 310 ---------------------------PKDKVVSS---------DIYLGREFSTLLITGP 333
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT GL +M SGL I +SE + + +F+ +FADIGDEQS+ QSLSTFS H+
Sbjct: 334 NTGGKTVTLKTTGLIELMGLSGLLIPASENSSISFFEEIFADIGDEQSIEQSLSTFSSHM 393
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I I+ ++ ++S VL DE+GAGT+P EG AL +S+LE G + ++TTH+ ELK
Sbjct: 394 TNIVKIMEKANNKSFVLFDELGAGTDPTEGAALAISILENLRARGCRI-MSTTHYSELKG 452
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
+ ENA +EF+ L+PTY++L GVPG+S+A I+ RLGL +++ A+++
Sbjct: 453 YALKTENVENASVEFNVETLRPTYRLLIGVPGKSNAFEISRRLGLKDNIIEEAKKVISTE 512
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
S + ++I + + + ++ ++AR +L + K + R K ++F +++
Sbjct: 513 SLQFEDLI---QSLQEKSIKAENDAREAAILRNDAEK--YKNRYK-------EKFERIES 560
Query: 704 ISD-AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ D A AR + A+Q+ SA + + K + L
Sbjct: 561 VRDNVYADAR----REAKQILDSAKEEADTILKNMRDL 594
>gi|270290964|ref|ZP_06197187.1| MutS2 protein [Pediococcus acidilactici 7_4]
gi|270280360|gb|EFA26195.1| MutS2 protein [Pediococcus acidilactici 7_4]
Length = 785
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 190/612 (31%), Positives = 294/612 (48%), Gaps = 103/612 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L VLE++K+ ++V F T G + L QL + DS ++ NA E
Sbjct: 6 LEVLEYEKVKNAVKQFIATENGAKE-LRQLVPMT----DSAKV---QNALKET------- 50
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQL-----SLRAAIKEDAD 168
L V++ VKS I R P + L + A L E Q+ + R I AD
Sbjct: 51 --LDAVNIYRVKSGIPIPRLEDIDEPLQRLKIDATLNGREIAQIGRVLRATREVINFFAD 108
Query: 169 L---YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
L + L ++ QL + + + ++ +G + +SAS L++ R + +E ++
Sbjct: 109 LPDTEVTVETLNGVVDQLETIPEIEERLNSSIEGNGHLLNSASSELRRIRAAITRVEGEI 168
Query: 226 YQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLS 282
Q M+ R + L + +I R I AD S F G++ SSSG +EP +
Sbjct: 169 RQRMEKFTRGSQAKYLSEPIVTIRSERYVIPVRADSRSRFGGVVHDQSSSGQTLYVEPEA 228
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
V LN++L+Q + + E+ +L L+ + D ++ + LD++NA+A Y+
Sbjct: 229 VVDLNNQLRQEQVAEVHEEQRILQELSALIAPYADTLKDNSKVLGHLDLLNAKAQYAHKL 288
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
T P ++S++ R I L +A HPL+
Sbjct: 289 KATEP-------------------QISTNNR---INLRQARHPLI--------------- 311
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
P ++ VP DI + + LVITG
Sbjct: 312 ---------------------------DPKKV----------VPNDIRLGGEYSTLVITG 334
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKTI LKTVGL +MA+SG+ I ++E + V F+ +FADIGDEQS+ Q+LSTFS H
Sbjct: 335 PNTGGKTITLKTVGLLQLMAQSGIFIPANENSTVRVFEEIFADIGDEQSIEQNLSTFSSH 394
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
+ +I+ +SL L DE+GAGT+P EG AL +++L+ + G+ ++I TTH+ ELK
Sbjct: 395 MDNTIHILEHLNERSLALFDELGAGTDPKEGAALAIAILDRVRQRGA-VSITTTHYPELK 453
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642
T Y NA MEFD L+PTYK+L G+PG+S+A I+ RLGL ++ AR L
Sbjct: 454 TYGYERSGTINASMEFDVDTLQPTYKLLLGIPGQSNAFEISRRLGLDEDIITQARGLVDQ 513
Query: 643 ASAEINEVIIEM 654
S ++N +I ++
Sbjct: 514 DSQDLNNMIKDL 525
>gi|168206066|ref|ZP_02632071.1| MutS2 family protein [Clostridium perfringens E str. JGS1987]
gi|170662410|gb|EDT15093.1| MutS2 family protein [Clostridium perfringens E str. JGS1987]
Length = 786
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 201/698 (28%), Positives = 327/698 (46%), Gaps = 120/698 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
LRVLE++K+ V +A T +E L L + Y D L+ET A++ + + G+
Sbjct: 6 LRVLEFNKIKELVKGYAITKSAKEMVL-DLKPYDSVY-DVKEHLEETKEALDILMRKGNP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L VK AI + L++ LL+ L ++ + + D R
Sbjct: 64 PFE----GLYDVKEAITRAEKGG------VLSIEGLLRIGNMLSVTRKLS-----DFLAR 108
Query: 173 FMP------LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
L M L V R + +I + + + I DSAS L R ++ +
Sbjct: 109 KEEEEEHRILEGMREGLIVLRGVESAISKAIVSEDEIADSASDKLYSIRRSLKEKNSSIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ ++R+ N + L + ++ G R I A+ S GL+ SS+G IEP +
Sbjct: 169 DKVNSIVRS-NAQYLQDSLYTVRGDRYVIPVKAEYKSQVPGLVHDQSSTGATLFIEPTAL 227
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+E+++ E +L L+ + ++D I+ N I++LD + A+A Y G
Sbjct: 228 VNLNNEIKELMLKERAEIERILAELSALVYKNIDVIKVNFNIIVELDFIFAKAKYGSDLG 287
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
GT P + E I L A HPL+
Sbjct: 288 GTLPIV----------------------NEEGVIDLMDARHPLI---------------- 309
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
P + VS+ DI++ R+ L+ITGP
Sbjct: 310 ---------------------------PKDKVVSS---------DIYLGREFSTLLITGP 333
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT GL +M SGL I +SE + + +F+ +FADIGDEQS+ QSLSTFS H+
Sbjct: 334 NTGGKTVTLKTTGLIELMGLSGLLIPASENSSISFFEEIFADIGDEQSIEQSLSTFSSHM 393
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I I+ ++ ++S VL DE+GAGT+P EG AL +S+LE G + ++TTH+ ELK
Sbjct: 394 TNIVKIMEKANNKSFVLFDELGAGTDPTEGAALAISILENLRARGCRI-MSTTHYSELKG 452
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
+ ENA +EF+ L+PTY++L GVPG+S+A I+ RLGL V++ A+++
Sbjct: 453 YALKTENVENASVEFNVETLRPTYRLLIGVPGKSNAFEISRRLGLKDNVIEEAKKVISTE 512
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
S + ++I + + + ++ ++AR +L + K + R K ++F +++
Sbjct: 513 SLQFEDLI---QSLQEKSIKAENDAREAAILRNDAEK--YKNRYK-------EKFERIES 560
Query: 704 ISD-AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ D A AR + A+Q+ SA + + K + L
Sbjct: 561 VRDNVYADAR----REAKQILDSAKEEADAILKNMRDL 594
>gi|326791035|ref|YP_004308856.1| MutS2 protein [Clostridium lentocellum DSM 5427]
gi|326541799|gb|ADZ83658.1| MutS2 protein [Clostridium lentocellum DSM 5427]
Length = 797
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 182/621 (29%), Positives = 297/621 (47%), Gaps = 108/621 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREAT-----LTQLWSINQTYQDSLRLLDETNAAIEM 106
++L LE+ K+ V ++A T G+EA LT+L + L ET AI +
Sbjct: 4 KTLYKLEFHKVKELVKAYAVTEGGKEAVAHAMPLTELEEVKT-------LQKETAEAIHI 56
Query: 107 Q-KHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKE 165
K G L L VK ++ + + L E LA+ +L+ + + + AI
Sbjct: 57 SIKQGKMPLG----TLKAVKPILKHIDIGAILSAGELLAIRDVLRLTRQGKNYYQDAIA- 111
Query: 166 DADLYIR----FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQML 221
++Y F LT +L + I + + D A+P L R Q++ L
Sbjct: 112 TGEVYPSIGGYFEGLTPFT-------TLEREISRCIIAADQFADDATPELAHIRKQMKSL 164
Query: 222 ERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSV 277
K+ +++ +I + + + + + V+ R CI + S FKG++ SS+G
Sbjct: 165 GVKIKEVLQNMIHSSHYQDMIQDPVVTLRQDRYCIPIKIEYKSQFKGIVHDQSSTGATVF 224
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
IEP++ V L + L+ + E +L+ LT ++ +EI + + LD + AR+
Sbjct: 225 IEPMAVVELGNALKSLEVKEQEEIEKLLIELTNQIAPITEEIGRNYELLTLLDSIFARSE 284
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
+SL + P + + I+L KA HPLL
Sbjct: 285 FSLRYDCREPRL----------------------NNQGYIFLKKARHPLL---------- 312
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
A E P+ DI++ +
Sbjct: 313 ----------------------------------------AKESVVPI--DIYVGKDFTT 330
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
L+ITGPNTGGKT+ LKT+GL +MA GL I ++E +++ F+ ++AD+GDEQS+ QSLS
Sbjct: 331 LLITGPNTGGKTVTLKTIGLFSLMAAIGLQIPAAEGSEMAIFEGIYADLGDEQSIEQSLS 390
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I +I+ + SLVLLDE+G+GT+P+EG AL M++LE + + T+ATTH
Sbjct: 391 TFSAHMTNIVSILKDMSLNSLVLLDEVGSGTDPVEGAALAMAILEHLRKQ-QIRTVATTH 449
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK S D ENA EFD L+PTY++L GVPG+S+A I+ +LGLP ++ A+
Sbjct: 450 YSELKLYALSTDGVENASCEFDVESLRPTYRLLIGVPGKSNAFAISMKLGLPEYLIDEAK 509
Query: 638 QLYGAASAEINEVIIEMERFK 658
+ ++ ++++++E+ K
Sbjct: 510 VYLQKENVKMEDILVDLEQSK 530
>gi|392329937|ref|ZP_10274553.1| DNA mismatch repair protein [Streptococcus canis FSL Z3-227]
gi|391419809|gb|EIQ82620.1| DNA mismatch repair protein [Streptococcus canis FSL Z3-227]
Length = 778
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 222/379 (58%), Gaps = 40/379 (10%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ ++ V+VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + +KV F+
Sbjct: 307 LQNPVANDLHFSKDLAVIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILADKGSKVAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++Q+ ++SLVL DE+GAGT+P EG +L M++
Sbjct: 367 GIFADIGDEQSIEQSLSTFSSHMTHIVAILNQADTESLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + ++ T+ATTH+ ELK + ENA MEFD + LKPTY+ + GVPGRS+A
Sbjct: 427 LEQLRLT-NIKTMATTHYPELKAYGIETPYVENASMEFDSISLKPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL +V A+ + S ++N +I ++E+ Q LE H + + +
Sbjct: 486 EIARRLGLAEHIVNEAQSMTDTDS-DVNRIIEQLEK---QTLESRKRLDHI----KEVEQ 537
Query: 681 NLLRTRRKI--LEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
+ L+ R + L H SQ K ++I A AR +V + L S S S +H +A
Sbjct: 538 DNLKFNRAVKKLYHDFSQ--AKDKEIEKARLEAREIVDMA---LAESDS-ILSRLHDKA- 590
Query: 739 QLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP 798
L+P H K Q +Q ++ A + V+K + K+ P
Sbjct: 591 ALKP------HEVIEAKGQ------LKQLVPER----DLAQNKVLK------KAKQLRAP 628
Query: 799 NVGDLVHVSSFGKKGTVIK 817
VGD + V+++G++GT++K
Sbjct: 629 RVGDDIIVTAYGQRGTLVK 647
>gi|259502869|ref|ZP_05745771.1| DNA mismatch repair protein MutS [Lactobacillus antri DSM 16041]
gi|259169236|gb|EEW53731.1| DNA mismatch repair protein MutS [Lactobacillus antri DSM 16041]
Length = 790
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 222/788 (28%), Positives = 372/788 (47%), Gaps = 139/788 (17%)
Query: 57 LEWDKLCHSVSSFARTSLG-REATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLD 115
LE+ ++ V+ + ++ G RE + QT QD L + T+ A ++ G L
Sbjct: 9 LEFAQIKGRVAHYLVSAAGQRELAALMPATDYQTVQDWL--TETTDGADILRLEGGLPLP 66
Query: 116 LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMP 175
L+ +K ++ ++ + L E V +LQ S ++Q + ++E I+
Sbjct: 67 ----KLADIKPQMKRLKIGANLNGTELAQVAKVLQASRSVQ-NFFEQMREKK---IKLRV 118
Query: 176 LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRN 235
L Q + +L S+ +++ VD DG I D AS L R + E ++ Q M +
Sbjct: 119 LEQTVDRLVTIPSVTTRLVRSVDPDGRINDEASTKLHGIRQLINKTENEIRQQMAQYTQG 178
Query: 236 ENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQ 292
++ + L + ++ + R I A + F G++ S+SG IEP + + N+ L+Q
Sbjct: 179 KSAKYLSEPIVTVRNDRFVIPVLARYRNKFGGVVHDQSASGQTLYIEPGAVMEDNNRLRQ 238
Query: 293 ARASVTKAEEDVLLALTE------KMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
A+ + +++VL L E + D+ E++L LD +NA+A+Y+
Sbjct: 239 AQ---IEEKQEVLRVLAELSALISPYRHDILNNEQILG---HLDFINAKASYA------- 285
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
++K SL P+ S + + L KA+HPL+ +D AN
Sbjct: 286 ------HELKASL---PLLSA------DNQVNLRKAWHPLIA-----------RDQAVAN 319
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
DI + + ++ITGPNTG
Sbjct: 320 -----------------------------------------DIKLGGDYQAVIITGPNTG 338
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKTI LKT+G+ +M ++GL I + E + + FD+VFADIGDEQSL Q+LSTFSGH++ +
Sbjct: 339 GKTITLKTLGIIQLMGQAGLFIPAQEGSTIGVFDNVFADIGDEQSLEQNLSTFSGHMENV 398
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ Q T++SLVLLDE+GAGT+P EG AL M++L+ + GSL+ I TTH+ ELK Y
Sbjct: 399 KAILDQLTARSLVLLDELGAGTDPKEGAALAMAILDEIGQWGSLVMI-TTHYPELKVYGY 457
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
NA MEFD+ L+PTY++L G+PGRS+ + IA+RLG+ ++ A+ L S +
Sbjct: 458 DRAKTINASMEFDQATLQPTYRLLLGIPGRSNGLEIAKRLGIGSAIIGEAQSLVSDDSQD 517
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+N +I ++ + + E + ++ + L + L+ QR R +++
Sbjct: 518 LNAMIGDLVEQRKRAREEGDRLAKLVAQNQADQEEL----NQKLDRFNEQRDRLLER--- 570
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
ARS ++ Q+ + +A ++H +QL + ++ Q L + Q
Sbjct: 571 ----ARS---QANHQVAQAKRKADRIIH-HLRQLEIQQGAGVKENQLIDAQGALNALHQ- 621
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
++P +SV+K R K + GD V V S+G+ G E++
Sbjct: 622 ------DNPRLQHNSVLK------RAKAKHDLHKGDAVLVKSYGQHG----------ELL 659
Query: 827 VQVGNMKW 834
+ GN KW
Sbjct: 660 SRRGNHKW 667
>gi|354580077|ref|ZP_08998982.1| MutS2 family protein [Paenibacillus lactis 154]
gi|353202508|gb|EHB67957.1| MutS2 family protein [Paenibacillus lactis 154]
Length = 789
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 150/400 (37%), Positives = 221/400 (55%), Gaps = 38/400 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+D+ + +++TGPNTGGKT+ LKT+GL +MA SGL I + E +++ FD+++A
Sbjct: 317 VPLDVELGNSYTSIIVTGPNTGGKTVTLKTIGLLNLMAMSGLFIPAEEGSQMCVFDAIYA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I++Q T +SLVLLDE+GAGT+P EG+AL +++LE
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIIRILTQMTPKSLVLLDEVGAGTDPAEGSALAIAILEHI 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G + IATTH+ ELK Y NA MEFD L PTY++L GVPGRS+A IAE
Sbjct: 437 HSMGCRM-IATTHYSELKAYAYERKGIINASMEFDINTLSPTYRLLVGVPGRSNAFAIAE 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGLPG +++ AR EV E +R + + + E RH + R + +
Sbjct: 496 RLGLPGSILEFAR----------GEVKEEDQRVE-HMIASLEENRHTAEVEREKAEQV-- 542
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
RK +E ++ ++Q++ D LV K+ + +ARS + LR A
Sbjct: 543 --RKEMEELRARHREELQRLEDQRD---KLVDKARVEAKQIVDKARSEAEQIISDLRKLA 597
Query: 745 SQSLHCTKVGKNQHVLTS---NFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVG 801
+ K +H L + ++ ++ + P +QS + + E G
Sbjct: 598 QEEGASVK----EHKLIAARKRLEEAEPEQGKRPGAQ--------RQSKQQRSIE---AG 642
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
D V V S +KG V+++ SKE I VQ+G MK + D+
Sbjct: 643 DEVRVYSLNQKGHVVELAGSKEAI-VQLGIMKMKVGLDDL 681
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 151/290 (52%), Gaps = 20/290 (6%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L+ LE+ K+ +++S + +TS+G E T QL + + +D LL T+ A + + G+
Sbjct: 6 LQTLEYRKILNTLSQYTQTSMGAERT-EQLRPVAE-LEDVKHLLAATDQAYTVDRLKGTP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
S +GV + + A++ R L P+E LA + S ++ + A I ED + I
Sbjct: 64 SF--SGV--TDINDALKRARIGGTLNPHELLATANTILGSRRIKRFI-AGIHEDEPIDIL 118
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
F L+ +I + + L +I +D+ + D+AS L Q R +++ E ++ + ++ +
Sbjct: 119 FH-LSDLISE---QKPLEDAIRACIDDSAEVLDTASAELAQIRRELRNGEVRIREKLESM 174
Query: 233 IRNENNESLFLE-VSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLND 288
IR+++ + + + +I G R I A+ S+ G ++ SG G+ IEP S V +N+
Sbjct: 175 IRSQSVAKMLQDQLITIRGDRFVIPVKAEYRSYFGGIVHDQSGSGATLFIEPESIVAMNN 234
Query: 289 ELQQARASVTKAEEDVLLALTEKM--QVDLDEIEKMLNGIIQLDVVNARA 336
+L++ R + E +L LT ++ Q D+ I+ L G QLD + A+A
Sbjct: 235 KLRETRIREEREIEVILQKLTAQVGEQADVLAIDVDLVG--QLDFIFAKA 282
>gi|418069516|ref|ZP_12706793.1| MutS family ATPase [Pediococcus acidilactici MA18/5M]
gi|357536047|gb|EHJ20078.1| MutS family ATPase [Pediococcus acidilactici MA18/5M]
Length = 785
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 189/614 (30%), Positives = 295/614 (48%), Gaps = 107/614 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQT--YQDSLRLLDETNAAIEMQKHGS 111
L VLE++K+ ++V F T G + L QL + + Q++L+ ET
Sbjct: 6 LEVLEYEKVKNAVKQFIATENGAKE-LRQLVPMTDSNKVQNALK---ET----------- 50
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQL-----SLRAAIKED 166
L V++ VKS I R P + L + A L E Q+ + R I
Sbjct: 51 ----LDAVNIYRVKSGIPIPRLEDIDEPLQRLKIDATLNGREIAQIGRVLRATREVINFF 106
Query: 167 ADL---YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
ADL + L ++ QL + + + ++ +G + +SAS L++ R + +E
Sbjct: 107 ADLPDTEVTVETLNGVVDQLETIPEIEERLNSSIEGNGHLLNSASSELRRIRAAITRVEG 166
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEP 280
++ Q M+ R + L + +I R I AD S F G++ SSSG +EP
Sbjct: 167 EIRQRMEKFTRGSQAKYLSEPIVTIRSERYVIPVRADSRSRFGGVVHDQSSSGQTLYVEP 226
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
+ V LN++L+Q + + E+ +L L+ + D ++ + LD++NA+A Y+
Sbjct: 227 EAVVDLNNQLRQEQVAEVHEEQRILQELSALIAPYADTLKDNSKVLGHLDLLNAKAQYAH 286
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
T P ++S++ R I L +A HPL+
Sbjct: 287 KLKATEP-------------------QISTNNR---INLRQARHPLI------------- 311
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
P ++ VP DI + + LVI
Sbjct: 312 -----------------------------DPKKV----------VPNDIRLGGEYSTLVI 332
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKTI LKTVGL +MA+SG+ I ++E + V F+ +FADIGDEQS+ Q+LSTFS
Sbjct: 333 TGPNTGGKTITLKTVGLLQLMAQSGMFIPANENSTVRVFEEIFADIGDEQSIEQNLSTFS 392
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H+ +I+ +SL L DE+GAGT+P EG AL +++L+ + G+ ++I TTH+ E
Sbjct: 393 SHMDNTIHILEHLNERSLALFDELGAGTDPKEGAALAIAILDRVRQRGA-VSITTTHYPE 451
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LKT Y NA MEFD L+PTYK+L G+PG+S+A I+ RLGL ++ AR L
Sbjct: 452 LKTYGYERSGTINASMEFDVDTLQPTYKLLLGIPGQSNAFEISRRLGLDEDIITQARGLV 511
Query: 641 GAASAEINEVIIEM 654
S ++N +I ++
Sbjct: 512 DQDSQDLNNMIKDL 525
>gi|167772055|ref|ZP_02444108.1| hypothetical protein ANACOL_03429 [Anaerotruncus colihominis DSM
17241]
gi|167665853|gb|EDS09983.1| MutS2 family protein [Anaerotruncus colihominis DSM 17241]
Length = 793
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 186/662 (28%), Positives = 309/662 (46%), Gaps = 128/662 (19%)
Query: 188 SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--V 245
SL ++I + + I D+ASPAL R +++ K +++D L+R+ + E +
Sbjct: 127 SLQRAISTAIVTEDEIADAASPALGDIRRKIRSAGAKAREVLDRLVRSATYQKYLQENII 186
Query: 246 SSIHGRLCIRTGAD-QLSFKGLLL-SSSSGIGSVIEPLSAVPLNDELQQARASVTKAEED 303
+ GR + + + KGL+ +S SG IEP+ V N+E++ + +
Sbjct: 187 TQRDGRFVVPVRQEYRNEIKGLVHDTSGSGATVFIEPMGVVEANNEIRILQGQEQAEIDR 246
Query: 304 VLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEP 363
+L L+ ++ D I I++LD+ A++ L +M+ + EP
Sbjct: 247 ILRELSAQVGACADSIGGSYEAIVELDLYFAKSR-------------LADEMRAT---EP 290
Query: 364 VTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKG 423
S+ ++E L +A HPLL
Sbjct: 291 AISETGAAE------LKRARHPLL------------------------------------ 308
Query: 424 EKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
P++ V PID+ + LV+TGPNTGGKT+ +KT+GL MA+
Sbjct: 309 -------PADRVV---------PIDLRLGGDFDTLVVTGPNTGGKTVAIKTLGLLSAMAQ 352
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
GL + +++ + VP F+ + DIGDEQS+ QSLSTFS H+ I I+ ++ +SLVLLDE
Sbjct: 353 CGLMLPAADGSTVPVFEKLLVDIGDEQSIEQSLSTFSAHMTNIIRILDEADGRSLVLLDE 412
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+GAGT+P+EG AL ++++E G+ + +ATTH+ E+K + ENA EFD L
Sbjct: 413 LGAGTDPVEGAALAVAIIERLRAQGAKV-VATTHYAEIKMYALNTPGVENASCEFDVATL 471
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
+PTY++L GVPGRS+A I ERLGLP V++ AR + EV+ ++E+ +
Sbjct: 472 RPTYRLLIGVPGRSNAFAICERLGLPAGVIEAARAHVSGENLRFEEVVSQLEQTR----- 526
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ L R R SQR ++ +A A+ R++ + +++
Sbjct: 527 ----------------QELERAR----VQAESQRAGAQRERDEADALRRAMEQEREREIE 566
Query: 724 PSASQARSLVHKRAQQ----------LRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVE 773
+ QAR +V + Q LR + + + + +N ++ + +
Sbjct: 567 RARVQARGIVEQAGMQAQKLLDELDELRRQKDSAGFAERAAQAKSAFKANMRR--LHDLA 624
Query: 774 HPATASSSVVKDIKQ-SPRVKRTELP-NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGN 831
P T K+I+Q +P E P GD V + S G++GTV+ + + VQ G
Sbjct: 625 DPVTR-----KNIEQYTP-----ERPLKRGDTVRLVSLGREGTVLSAPDGQGFVQVQAGI 674
Query: 832 MK 833
+K
Sbjct: 675 IK 676
>gi|422346549|ref|ZP_16427463.1| MutS2 protein [Clostridium perfringens WAL-14572]
gi|373226094|gb|EHP48421.1| MutS2 protein [Clostridium perfringens WAL-14572]
Length = 786
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 200/698 (28%), Positives = 327/698 (46%), Gaps = 120/698 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
LRVLE++K+ V +A T +E L L + Y D L+ET A++ + + G+
Sbjct: 6 LRVLEFNKIKELVKGYAITKSAKEMVL-DLKPYDSVY-DVKEHLEETKEALDILMRKGNP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L VK AI + L++ LL+ L ++ + + D R
Sbjct: 64 PFE----GLYDVKEAITRAEKGG------VLSIEGLLRIGNMLSVTRKLS-----DFLAR 108
Query: 173 FMP------LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
L M L V R + +I + + + I DSAS L R ++ +
Sbjct: 109 KEEEEEHRILEGMREGLIVLRGVESAISKAIVSEDEIADSASDKLYSIRRSLKEKNSSIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ ++R+ N + L + ++ G R I A+ S GL+ SS+G IEP +
Sbjct: 169 DKVNSIVRS-NAQYLQDSLYTVRGDRYVIPVKAEYKSQVPGLVHDQSSTGATLFIEPTAL 227
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+E+++ E +L L+ + ++D I+ N I++LD + A+A Y G
Sbjct: 228 VNLNNEIKELMLKERAEIERILAELSALVYKNIDVIKVNFNIIVELDFIFAKAKYGSDLG 287
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
GT P + E I L A HPL+
Sbjct: 288 GTLPIV----------------------NEEGVIDLMDARHPLI---------------- 309
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
P + VS+ DI++ R+ L+ITGP
Sbjct: 310 ---------------------------PKDKVVSS---------DIYLGREFSTLLITGP 333
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT GL +M SGL I +SE + + +F+ +FADIGDEQS+ QSLSTFS H+
Sbjct: 334 NTGGKTVTLKTTGLIELMGLSGLLIPASENSSISFFEEIFADIGDEQSIEQSLSTFSSHM 393
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I I+ ++ ++S +L DE+GAGT+P EG AL +S+LE G + ++TTH+ ELK
Sbjct: 394 TNIVKIMEKANNKSFILFDELGAGTDPTEGAALAISILENLRARGCRI-MSTTHYSELKG 452
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
+ ENA +EF+ L+PTY++L GVPG+S+A I+ RLGL V++ A+++
Sbjct: 453 YALKTENVENASVEFNVETLRPTYRLLIGVPGKSNAFEISRRLGLKDNVIEEAKKVISTE 512
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
S + ++I + + + ++ ++AR +L + K + R K ++F +++
Sbjct: 513 SLQFEDLI---QSLQEKSIKAENDAREAAILRNDAEK--YKNRYK-------EKFERIES 560
Query: 704 ISD-AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ D A AR + A+Q+ SA + + K + L
Sbjct: 561 VRDNVYADAR----REAKQILDSAKEEADAILKNMRDL 594
>gi|425738677|ref|ZP_18856935.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus massiliensis S46]
gi|425479024|gb|EKU46205.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus massiliensis S46]
Length = 782
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 144/384 (37%), Positives = 218/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +K+ FD VF DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIIMAQSGLLIPTLDGSKLGVFDHVFCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+K I NI+ ++ SL+L DE+GAGT+P EG L MS+L+ E GSL+ +ATTH
Sbjct: 392 TFSSHMKTIVNILDEANQNSLILFDELGAGTDPTEGATLAMSILDYVHEIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++RLGL ++ +A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVNTLSPTYKLLMGVPGRSNAFEISKRLGLKLQIINHAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EIN +I +ER + E E + + +HK L +T + A Q
Sbjct: 511 SMVGHDEKEINAMIESLERNTKRVDEQKIELDALIREAETMHKELDQT------YTAYQN 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
+ K ++ + A + A Q A++ + K +Q+R V +
Sbjct: 565 YEK--RLMEQAK-------EKANQRVKEATKEADTILKELRQMRDKKG-------VDVKE 608
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
H L + ++E+ A S +K + + K+ + GD V V S+G+KG V++
Sbjct: 609 HELIDKKK-----RLENQYEADS-----LKANVKKKKWDKIKAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ +E VVQ+G +K + D+
Sbjct: 659 L-LDDDEAVVQMGIIKMKLPLNDL 681
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 151/340 (44%), Gaps = 34/340 (10%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
++L VLE+DK+ ++ + + LG A + + + + + ++ET+ ++
Sbjct: 4 KTLDVLEFDKIKATIQNETISELG--ALKVKAMKPSTDFDEVVHQMEETDEISQIYNKRR 61
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+G LS + ++ S L E A+ ++Q + ++ED I
Sbjct: 62 MP-SLSG--LSKISDYVKRATIGSVLNVKELNAIKRVIQVQNQFKTFYNQMVEEDEK--I 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ L + I QL V L ++I Q DE + D ASP L R ++ ++ Q +D
Sbjct: 117 VYPILNEQIEQLPVLTDLYQTIHQTCDE-SDLFDDASPTLHSIRSKISTTNHRIRQQLDK 175
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLN 287
++++++N+ + V+ + R I A+ + F G++ S+SG IEP S V +N
Sbjct: 176 IVKSQSNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSVVEMN 235
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+++ + R+ +L LT + D + + + +D + A+A Y+ S GT P
Sbjct: 236 NQISRLRSEEDTERARILTELTTLVATDSEGCLSAESIMGHIDFLTAKARYARSIKGTKP 295
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
+D IYLPKA+HPLL
Sbjct: 296 TFTTNRD----------------------IYLPKAFHPLL 313
>gi|412988993|emb|CCO15584.1| DNA mismatch repair protein MutS [Bathycoccus prasinos]
Length = 1144
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 145/402 (36%), Positives = 217/402 (53%), Gaps = 46/402 (11%)
Query: 444 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 503
PVP+D+F+ +T+ +VITGPNTGGKT +K +GL+ +MA++G+ + +E A +PWFD V
Sbjct: 584 PVPVDVFVEARTKCVVITGPNTGGKTAAMKALGLSALMARAGMFV-PAERAHLPWFDYVL 642
Query: 504 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 563
DIGD+Q L +LSTFS L I+ ++T QSLVL+DE+G GT+PLEG A+ + L+A
Sbjct: 643 CDIGDDQDLLTNLSTFSARLTTQKAILKRATPQSLVLIDEVGTGTSPLEGAAIARAFLKA 702
Query: 564 FA-----ESGSLLTIATTHHGELKTLKY---SNDFFENACMEFDEVKLKPTYKILWGVPG 615
A G L ATTH G LK LKY + FENA +EFDE +L+PTY++LW VPG
Sbjct: 703 LAGLLPRRLGVSLAFATTHQGSLKALKYEHKDSGAFENAAVEFDEAELRPTYRLLWSVPG 762
Query: 616 RSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLM-- 673
RS A+ IA+R L V+ +A+++ G + A +++VI E+E + + V +A L
Sbjct: 763 RSRALQIAQRNKLDEDVINSAKEVMGQSFATLDDVIAELEGARKDADKAVAKAMQMLKDV 822
Query: 674 -----LSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
+RN + +LR + E A ++ + +IS A I + +Q SA+
Sbjct: 823 EKRIPQARNAEQKVLRVK----EDVAMKQATTIVRISREAKIRIQGEERLKRQEL-SANT 877
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
+S++ K A S ++ K + +N + +K T
Sbjct: 878 KKSMIAKSAA----GESDREREIRLAKERKAAATN-GEAGAEKTHQECT----------- 921
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVG 830
E+P VGD V + + G G V KV S E + V G
Sbjct: 922 -------EMPAVGDQVILKASGLAGKVTKV--SGEIVTVAAG 954
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 154/322 (47%), Gaps = 27/322 (8%)
Query: 51 YESLRVLEWDKLCHSVSSFARTSLGR--------EATLTQLWSINQTYQDSLRLLDETNA 102
Y+SL + W +L VS F T+LG+ E+ +++++S + S LLDET +
Sbjct: 133 YDSLDRVGWFELLSFVSEFTSTALGKARLSSSEGESLISEVYS----QEMSELLLDETES 188
Query: 103 AIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAA 162
A+ M+ SLD G+ + ++ + + +PL +E +AV L+ + L+LS+
Sbjct: 189 AMYMESVAGVSLDFGGMLTIETRRSVHKASQGAPLGGDELMAVANFLENARRLKLSIENV 248
Query: 163 IKEDA-----DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQ 217
ED ++ MPL + +Q+ + I VD+ GS KD+ASP L+++R
Sbjct: 249 SHEDDETGEIEVPRAMMPLRNIAVQMETFSEVADIIKSKVDDTGSFKDNASPELRRARAH 308
Query: 218 VQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV 277
+ E +L +L+ + + S GR+C+ + L+L + SG+ ++
Sbjct: 309 LSGKETQLKELLSRMPGS---------AVSFRGRMCLAVSPESAPKNALVLGTQSGL-TL 358
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
IEP S V LN EL +A+ A + + L+ + +EI + L I LDV+ AR
Sbjct: 359 IEPPSVVNLNTELAKAKDDEESAIDGIKRELSRVIMEVAEEILRCLELTIDLDVIAARCR 418
Query: 338 YSLSFGGTSPNIFLPQDMKRSL 359
+ + P D++ ++
Sbjct: 419 HGQALNSVRPTFARESDLEDAI 440
>gi|313889740|ref|ZP_07823382.1| MutS2 family protein [Streptococcus pseudoporcinus SPIN 20026]
gi|416851675|ref|ZP_11908820.1| MutS2 family protein [Streptococcus pseudoporcinus LQ 940-04]
gi|313121785|gb|EFR44882.1| MutS2 family protein [Streptococcus pseudoporcinus SPIN 20026]
gi|356739164|gb|EHI64396.1| MutS2 family protein [Streptococcus pseudoporcinus LQ 940-04]
Length = 777
Score = 226 bits (576), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 220/399 (55%), Gaps = 43/399 (10%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PVP D+ +R+ V+VITGPNTGGKTI LKT+GLA +M +SGL IL+ + + + F+
Sbjct: 307 LKNPVPNDLHFSRQLSVIVITGPNTGGKTIMLKTLGLAQIMGQSGLPILADQGSTIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTNIVAILDEANQDSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + + T+ATTH+ ELK F ENA MEFD LKPTY + GVPGRS+A
Sbjct: 427 LEQLRLT-EIKTMATTHYPELKAYGIETAFVENASMEFDSRSLKPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSR-NLH 679
IA RLGL +V A Q+ + S ++N +I E+E+ Q LE H H + + NL
Sbjct: 486 EIARRLGLADPIVNQAEQMTDSDS-DVNRIIEELEK---QTLESRHRLDHIKEVEQDNLK 541
Query: 680 KNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQ 739
N R +K+ A + ++++K S A +L ++++ +A +L
Sbjct: 542 FN--RAVKKLYYEFAQAKDKEIEKASLEAQEIVNLALAESEEILAKLHEASAL------- 592
Query: 740 LRPSASQSLHCTKVGKNQHVLTSNFQ-QTTVDKVEHPATASSSVVKDIKQSPRVKRTELP 798
K ++ + Q + V K + K ++Q P
Sbjct: 593 ---------------KPHQIIEAKGQLKKLVPKTDLTKNKVLKKAKKLRQ---------P 628
Query: 799 NVGDLVHVSSFGKKGTVIK-VEPSKEEIVVQVGNMKWIM 836
GD + V+++G++GT++K V+ K E QVG +K +
Sbjct: 629 QAGDDILVTAYGQRGTLLKQVKGDKWE--AQVGLIKMTL 665
>gi|421860087|ref|ZP_16292245.1| mismatch repair ATPase [Paenibacillus popilliae ATCC 14706]
gi|410830291|dbj|GAC42682.1| mismatch repair ATPase [Paenibacillus popilliae ATCC 14706]
Length = 785
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 218/397 (54%), Gaps = 34/397 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI + + +++TGPNTGGKT+ LKT+GL +MA SGL I + + +++ FD+++A
Sbjct: 317 VPIHVELGNSYTSILVTGPNTGGKTVTLKTIGLLSLMAMSGLFIPAEDGSQMCVFDTIYA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS HL I I+ Q T +SLVLLDE+GAGT+P EG+AL +++LE
Sbjct: 377 DIGDEQSIEQSLSTFSSHLTNIIRILEQMTPKSLVLLDEVGAGTDPAEGSALAIAILEHI 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G + +ATTH+ ELK Y NA MEFD L+PTY++L GVPGRS+A IAE
Sbjct: 437 HRLGCRM-VATTHYSELKAYAYERKGVINASMEFDVQTLRPTYRLLIGVPGRSNAFAIAE 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGLP ++ +AR E+ E + +E ++ +A + L +L
Sbjct: 496 RLGLPKSIIDHAR-------GEVTEEDMRVETMIASLEDNRLKAEAERETASKLRMDLEA 548
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
++K+ Q + ++ + A AR++V K+ +Q AQ++
Sbjct: 549 MQQKLTRELEKQEADREKRQAQAEEKARAIVDKARRQ---------------AQEIIADL 593
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
Q L V +H+LT + +++ A + K +Q+ +R E GD V
Sbjct: 594 RQ-LAMEGVEVKEHMLTEARK-----RLDEAAPEAKLAAKPKRQAKPARRIE---AGDDV 644
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V S +KG+V VE EE VVQ+G MK + D+
Sbjct: 645 RVYSLNQKGSV--VEFVGEEAVVQLGMMKMKVPLDDL 679
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 142/303 (46%), Gaps = 20/303 (6%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA--IEMQKHGS 111
L L++ K+ S+++ A T LG +A L L I+ +++ R L T+ A +E K G
Sbjct: 6 LNTLDYHKILASLANHAATGLGEQAAL-HLRPISD-FEEVKRRLQATDEAMTVERLKGGP 63
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L GV ++ A++ R + L E + ALL + + + A +E+A
Sbjct: 64 P---LAGV--KDIRGALKRARIQAILSSTELWDISALLFAARRTKHHIAAVHEEEA---- 114
Query: 172 RFMPLTQMIMQLFVN-RSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+PL Q + + + + L + I Q +DE G I D AS L R +++ E ++ + ++
Sbjct: 115 --IPLLQDLAETISDQKQLEEDIRQCIDEQGEILDQASFELAAIRRELRTGETRIREKLE 172
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPL 286
+IR N + E ++ + R I + S ++ SG G+ IEP + V +
Sbjct: 173 AMIRTSNAAKMLQEQLITIRNDRYVIPVKQEYRSHYSGIVHDQSGSGATLFIEPEAIVAM 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L++ + + E +L LT+++ + D +E + LD + A+A + +
Sbjct: 233 NNHLRETKLREEREIERILSRLTDRVGLIADVLEYDTGAVETLDFMFAKARLAREMKASL 292
Query: 347 PNI 349
P +
Sbjct: 293 PRM 295
>gi|374857000|dbj|BAL59853.1| DNA mismatch repair protein MutS2 [uncultured candidate division
OP1 bacterium]
Length = 784
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 176/614 (28%), Positives = 302/614 (49%), Gaps = 96/614 (15%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTY-QDSLRLLDETNAAIEMQKHGS 111
+L+ LE+DKL + SFA + LGRE S + Y Q + ++E A+
Sbjct: 9 TLKDLEYDKLKGILKSFACSPLGRELIENLRPSADIEYLQREFQRVEELRTAL------- 61
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
DL + ++ +R + + L E LA+ L + +L R +ED
Sbjct: 62 LETDLALGSFTDIRPLLRHAHQTTALSGEEFLALGQAL--GQIRRLRDRLLGQED----- 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
F L ++ ++ + R L ++I +V DEDG ++ +ASP L++ + ++LE ++ + +
Sbjct: 115 -FSQLRELGERMHIFRELEENIARVFDEDGEVRPTASPRLRELTARKRILEERVQRHLQA 173
Query: 232 LIRNENNESLFLE--VSSIHGRLCI--RTGADQLSFKGLLLSSSSGIGSVIEPLSAVPLN 287
LI++ + + ++ GR I ++ A + SS SG +EP S V N
Sbjct: 174 LIQSGQLAGVLQDSVITRRSGRFVIPIKSAARHELDAVVHDSSDSGQTLYVEPTSVVTEN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+E+++ + + +L LT+++Q + +IE+ L + D++ A+A +++ + P
Sbjct: 234 NEIRELDGEIRDEQLRILRELTQRLQAETRKIEETLKAVAYFDMLYAKAQFAIHLRCSRP 293
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+ ++ E ++L +A HPLL Q
Sbjct: 294 RL------------------TTNGE----LHLIEARHPLLDQ------------------ 313
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
T + P E L L P + +VITGPNTGG
Sbjct: 314 -------------------TTVVPIE-----LRLGEPF----------QGIVITGPNTGG 339
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKTVGL +MA+SG+ I ++ + + F +F DIGDEQS+ Q+LSTFS H+K +
Sbjct: 340 KTVSLKTVGLLTLMAQSGIPIPAAPDSSIALFQKIFTDIGDEQSIHQNLSTFSAHMKNLV 399
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
++ ++ SQ+LVL+DE+GAGT+P EG ALG+++L+A +S + + I TTH +K Y
Sbjct: 400 GVLREADSQTLVLIDELGAGTDPTEGAALGIAILQALLDSQAKV-IVTTHFSAIKHFAYQ 458
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
+ + +EFD L PTY+I+ GV G S+A IAERLGLP V+ A+ +
Sbjct: 459 HPKLKTCSVEFDTETLSPTYRIVEGV-GASNAFIIAERLGLPASVIAAAKTHVTEGQVRV 517
Query: 648 NEVIIEMERFKTQF 661
++I ++++ + +
Sbjct: 518 EDIIHKLQQERGEL 531
>gi|403379972|ref|ZP_10922029.1| recombination and DNA strand exchange inhibitor protein
[Paenibacillus sp. JC66]
Length = 788
Score = 226 bits (575), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 150/400 (37%), Positives = 217/400 (54%), Gaps = 37/400 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+D+ + + + ++ITGPNTGGKT+ LKT+GL +MA SGL + + + +++ FD +FA
Sbjct: 317 VPLDVELGNQFQSIIITGPNTGGKTVTLKTIGLLSLMAMSGLFVPAEDSSQLCVFDGIFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ + T +SLVLLDE+GAGT+P EG+AL +S+LEA
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIISILKEMTPKSLVLLDEVGAGTDPAEGSALAISILEAI 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G + +ATTH+ ELK Y NA MEFD L PTY++L GVPGRS+A IAE
Sbjct: 437 HRLGCRM-VATTHYSELKAYAYERKGIVNASMEFDVQTLSPTYRLLVGVPGRSNAFAIAE 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL ++ +AR GA + +I +E + A L + L +
Sbjct: 496 RLGLDKKIIDHARSQVGADDQRVESMIATLEENRLSAEAERKSAEQLNAEVAALRQQLEK 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
R + +E SQ L+ K+ QQ + +AR + ++LR A
Sbjct: 556 ERSR-MEQQRSQ-----------------LLAKAEQQAEEAVKKARQEAEQIIRELRQMA 597
Query: 745 SQ---SLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVG 801
+ S+ K+ + + L Q +DK P + S S K P G
Sbjct: 598 MEERSSIKEHKLIEAKRKLDEAVPQ--LDK--KPVSGSRSGSKARAIEP----------G 643
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
D V V S G+KG V+++ K E+ VQ+G MK + TD+
Sbjct: 644 DEVLVRSLGQKGHVVELSGDK-EVTVQLGIMKMKIAKTDL 682
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 140/299 (46%), Gaps = 16/299 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L+ LE+ K+ + SFA TSLG+ A T+L + + R L T+ A+++++ G+
Sbjct: 6 LKTLEFHKILDKLQSFAATSLGK-AWATELQP-SGDLDEVKRRLTATDEAVKVERIKGAA 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ V+ +++ + L P E L L L+ + + ED +L +
Sbjct: 64 PFG----GIRDVRPSVKRAKIGGLLNPAELLDTANTLNGGRRLKRFI-LQMAEDHELTL- 117
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
L Q+ + L SI+ ++E + DSAS L + R +++ E ++ + ++ +
Sbjct: 118 ---LADKAAQVMDLKDLADSILAKINEHAEVMDSASQELARIRQELRTGEARIREKLEQM 174
Query: 233 IRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
IR + + + + ++ + R I + S G ++ S+SG +EP + V LN+
Sbjct: 175 IRTPSTQKMLQDPIITIRNDRYVIPVKQEYRSSIGGMIHDQSASGATLFMEPQAVVQLNN 234
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
L++ + E +L LT ++ DEI L+ + +LD + A+A + F T P
Sbjct: 235 RLRELSFKEEREIEKILGMLTAEVAEAADEIAFNLDILAELDFIFAKAGLAREFKATLP 293
>gi|227513131|ref|ZP_03943180.1| MutS family DNA mismatch repair protein [Lactobacillus buchneri
ATCC 11577]
gi|227083706|gb|EEI19018.1| MutS family DNA mismatch repair protein [Lactobacillus buchneri
ATCC 11577]
Length = 788
Score = 226 bits (575), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 146/404 (36%), Positives = 219/404 (54%), Gaps = 44/404 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI I + R ++ITGPNTGGKTI LKTVGL +M +SGL I ++E +++ FD VFA
Sbjct: 318 VANDIQIGDEYRTIIITGPNTGGKTITLKTVGLLQLMGQSGLFITANEESQIGVFDDVFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGD+QS+ +LSTFS H+ I +I++ +SQSL+LLDE+GAGT+P EG AL M++++A
Sbjct: 378 DIGDDQSIEANLSTFSSHMDNIISILNGMSSQSLILLDELGAGTDPKEGAALAMAIIDAI 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+SG L IATTH+ ELK Y+ NA MEFD L+PTY+ L G+PG+S+A+NIA
Sbjct: 438 HQSGCEL-IATTHYPELKAYAYNRSGIINASMEFDIETLRPTYRFLMGIPGQSNALNIAS 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
+LGL +++ AR + + +IN +I E+ + + + L S LH +L
Sbjct: 497 KLGLSKGIIEKARAFTDSENQDINNMIDELTAQTKRAHDEADQLDEQLTDSTKLHDDLQN 556
Query: 685 T-------RRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
+ +LE Q + V+K +A + +HK QQ+ SA + L+ +
Sbjct: 557 QFTQYQNQKDHLLEQAREQANQVVEKAKISADKIIADLHKKQQQVGQSAIKENELIDAKG 616
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL 797
R + +L KV + + +F HP
Sbjct: 617 ALNRLEVTPNLKKNKVLRKEKA-KHDF---------HP---------------------- 644
Query: 798 PNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V S+G++GT+I+ E + VQ+G +K + D+
Sbjct: 645 ---GDEVLVKSYGQQGTLIRQEKNG-AWEVQLGILKMQIDENDL 684
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 153/341 (44%), Gaps = 41/341 (12%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE++K+ ++++ T GRE + QL ++ + RL + + A ++ G
Sbjct: 6 LETLEYNKIKDQLANYLTTDRGRE-IIDQLRPSSKFEEVDHRLKETEDGANIVRLQGEIP 64
Query: 114 LDLTGVDLSLVKSAIREVR-RASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L+ + ++ +R + L E + LL+ T+ ED +L +
Sbjct: 65 I----PKLTEISPYMKRLRIENASLSGTELSHITKLLRAVRTINDFFDNFQDEDVNLTV- 119
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
++Q++ QL + + K ++Q ++EDGSI D+AS L+ R + + + M
Sbjct: 120 ---VSQIVSQLTLMPEITKRMVQSINEDGSILDTASSELRTIRRTINRTQNDIRSRMGKY 176
Query: 233 IRNENNESLFLEVSSIHGR-----LCIRTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
++ ++S +L S I R L IR Q F G++ S+SG +EP + V +
Sbjct: 177 LKG--SDSKYLTESIITMREDRFVLPIRADYKQ-HFGGIVHDQSASGQTLYVEPSNVVEM 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N++L++ + + E +L LT+ ++ E+ +N + QLD VNA+A ++
Sbjct: 234 NNQLRRDQLAERAEERRILAELTDLIRPYRSELLNNMNLVGQLDFVNAKAKFAHQIRAVQ 293
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
P I R+ + L +A HPL+
Sbjct: 294 PEI----------------------SRDNVVNLRQARHPLI 312
>gi|228999325|ref|ZP_04158905.1| hypothetical protein bmyco0003_38810 [Bacillus mycoides Rock3-17]
gi|229006880|ref|ZP_04164512.1| hypothetical protein bmyco0002_37820 [Bacillus mycoides Rock1-4]
gi|228754373|gb|EEM03786.1| hypothetical protein bmyco0002_37820 [Bacillus mycoides Rock1-4]
gi|228760522|gb|EEM09488.1| hypothetical protein bmyco0003_38810 [Bacillus mycoides Rock3-17]
Length = 786
Score = 226 bits (575), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 149/402 (37%), Positives = 225/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNDIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVLDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 YNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR G + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDHVIDRARNHIGTDTNKIENMIAKLEESQKNAEREWNEAEEHRKQSEKLHREL-- 554
Query: 685 TRRKILEHC--ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++H+ +QLR
Sbjct: 555 -QRQIIEFNDERDERLLKAQK-------------EGEEKVEAAKKEAEGIIHE-LRQLRK 599
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
+ L S ++ A+ +VK KQ +VK T +
Sbjct: 600 AQ---------------LASVKDHELIEAKSRLEGAAPELVK--KQRVKVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG ++K + S E VQ+G +K +K +D+
Sbjct: 643 AGDEVKVLTFGQKGQLLK-KVSDNEWNVQIGILKMKVKESDM 683
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/302 (23%), Positives = 145/302 (48%), Gaps = 19/302 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA---IEMQKH 109
+LRVLE++K+ + +SLGR+ + + S + +++ + + + T+ A I ++ H
Sbjct: 5 TLRVLEYNKVKEQLLEHVASSLGRDKVKSLVPSTD--FEEIVEMQETTDEAAKVIRLKGH 62
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ L G+ ++ ++ + S L P+E L + + + S ++ + + +L
Sbjct: 63 ----VPLGGI--FDIRPNVKRAKIGSMLSPHELLDIASTMYGSRQMKRFIEDMVDNGVEL 116
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + +
Sbjct: 117 PI----LETYVAQIVSLYDLEKKITSCIGDGGEVVDSASDKLRGIRNQIRTAESRIREKL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVP 285
+ + R+ N + + + V+ + R I + G ++ S+SG IEP V
Sbjct: 173 ENMTRSSNAQKMLSDAIVTIRNDRYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVE 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ LQ+AR + E +L+ LTE++ ++ D + + I LD + A+A Y+ T
Sbjct: 233 LNNALQEARVKEKQEVERILMMLTEEVALEADTVLANVEVIANLDFIFAKAFYAKRIKAT 292
Query: 346 SP 347
P
Sbjct: 293 KP 294
>gi|88807280|ref|ZP_01122792.1| putative DNA mismatch repair protein MutS family [Synechococcus sp.
WH 7805]
gi|88788494|gb|EAR19649.1| putative DNA mismatch repair protein MutS family [Synechococcus sp.
WH 7805]
Length = 794
Score = 226 bits (575), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 123/249 (49%), Positives = 162/249 (65%), Gaps = 5/249 (2%)
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
ITGPNTGGKT+ LK++GLA +MA++GL + S +PW V ADIGDEQSL QSLSTF
Sbjct: 339 ITGPNTGGKTVTLKSIGLAALMARAGLWVPCSGSPTLPWCAQVLADIGDEQSLQQSLSTF 398
Query: 520 SGHLKQIGNI---ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 576
SGH+K+IG I I + +LVLLDE+GAGT+P EGTAL +LL A+ + LT+ATT
Sbjct: 399 SGHVKRIGRILEAIRSGPAPALVLLDEVGAGTDPSEGTALATALLRTLADR-ARLTVATT 457
Query: 577 HHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 636
H GELK LKYS+ FENA + FD L PTY +LWG+PGRS+A+ IA RLGL G V+ A
Sbjct: 458 HFGELKALKYSDARFENASVAFDSETLSPTYHLLWGIPGRSNALAIATRLGLEGSVIDEA 517
Query: 637 RQLYG-AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCAS 695
R L E+N VI +E + + +A L + LH+ LL+ K +H A
Sbjct: 518 RALLAPVGDGEVNTVIRGLEEQRMRQQAAAEDAAALLARTELLHEELLQRWEKQKQHSAE 577
Query: 696 QRFRKVQKI 704
++ + Q++
Sbjct: 578 RQEQGRQRL 586
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 135/308 (43%), Gaps = 26/308 (8%)
Query: 50 VYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKH 109
+ E+L +LEW +LC ++SFA T GR ++ ++ + QDSL L +T +EM
Sbjct: 4 LQETLELLEWPRLCDHLASFASTVQGRRHC--KIDALPASLQDSLALQAQT---LEM--- 55
Query: 110 GSCSLDLT---GVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIK 164
SLD G+ V R + R S + LL + TL + LR I
Sbjct: 56 --GSLDGVLEGGLSFQGVSDLARTLLRCSK---GGTASGEELLDVANTLAAARRLRRQID 110
Query: 165 EDADLYIRFMPL-TQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
E P+ T ++ + L + + ++E G + D ASP L R Q Q L
Sbjct: 111 EP-----ELRPVCTTLLRDVATFPDLEQRLKFAIEEGGRVADRASPGLDGLRRQWQELRA 165
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIHGR--LCIRTGADQLSFKGLLLSSSSGIGSVIEPL 281
+ + +IR ++ HGR L ++ GA + SS+SG +EP
Sbjct: 166 RRRDRLQDVIRRWAAHLQDTVIAERHGRPVLAVKAGAGGQCPGMVHDSSASGSTMFVEPK 225
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
S + L ++L + + E+ VL L+ + ++ ++ ++ +++LD+ AR Y
Sbjct: 226 SVIDLGNKLADVDGRIREEEQRVLSELSAAVAEQVEGLQHLMQVLLKLDLALARGRYGQW 285
Query: 342 FGGTSPNI 349
G P +
Sbjct: 286 LGAVPPRL 293
>gi|333370261|ref|ZP_08462275.1| DNA mismatch repair protein MutS [Desmospora sp. 8437]
gi|332978201|gb|EGK14933.1| DNA mismatch repair protein MutS [Desmospora sp. 8437]
Length = 784
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 222/786 (28%), Positives = 362/786 (46%), Gaps = 125/786 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
LR LE+D++ + A + G++A + + R+L T AI++ + G+
Sbjct: 6 LRTLEYDRIIDQLIQQATSETGKKAAAG--LQPSPRGDEVQRMLQSTAEAIDLLRLKGNL 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
SL+ +S + A++ R L E L V ET+ L ++ L +
Sbjct: 64 SLEA----VSDIHPALQRARIGGLLTSVELLRVAGTAGAEETVCSVLEGMDPDETPLPL- 118
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
L ++ QL R L ++I +DEDG++ D ASP L + R ++ L+ + +D
Sbjct: 119 ---LRELSGQLKETRILARTIRGAIDEDGAVTDDASPELGRIRRNIRQLQGAIRTTLDEF 175
Query: 233 IRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+R+ + + + ++ + R I + + + +G++ S+SG IEP + V N+
Sbjct: 176 LRHSQYQKMLQDPIITQRNDRYVIPVKQEYRGAVRGIVHDQSASGQTLFIEPQAVVNQNN 235
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
L++ + E +L LT ++ D++E L+ + QLD++ A+A G P
Sbjct: 236 RLRELELEEEREVERILGELTAEVADKADDLESNLSVLTQLDLILAKARLGKRMKGIVPG 295
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
+ + + I L +A HPL+ K+ + E
Sbjct: 296 VNM----------------------DGFIRLKRARHPLI----------PMKEAVPNDVE 323
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
L R + R +VITGPNTGGK
Sbjct: 324 LGREQ------------------------------------------RAIVITGPNTGGK 341
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKTVGL +MA+SGL I + E + + F V+ADIGDEQS+ Q+LSTFS H+ I +
Sbjct: 342 TVTLKTVGLLALMAQSGLPIPAEEESDLAIFTGVYADIGDEQSIEQNLSTFSSHMTNIVH 401
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I+ SLVLLDE+GAGT+P EG AL +S+LE E G + +ATTH+ ELK ++
Sbjct: 402 ILDSMDENSLVLLDELGAGTDPTEGAALAISVLERVLEQGCRV-VATTHYNELKLYAHAR 460
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
+ NA +EFD L PTY++L GVPGRS+A I+ RLGLP V+Q A+ + +
Sbjct: 461 EGVINASVEFDVESLSPTYRLLTGVPGRSNAFEISRRLGLPEEVIQAAKSQLSSEENRLE 520
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAA 708
E+I + + + + EA R + LL+ + +E R+ ++I ++A
Sbjct: 521 EMIGALSEDRRRAEKERREAEAL----RQQAEALLQDLKLKMESWD----REKERIRESA 572
Query: 709 AI-ARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767
A+++V ++ ++ Q R +R +L+ +H L ++
Sbjct: 573 RREAKTIVSRAKREADAVLEQLRRWARERPGELK---------------EHRLIEAKKRL 617
Query: 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVV 827
+ E P S ++S R R VGD V V + G+KG VI + + E V
Sbjct: 618 EDAEPETPTAQSVD-----RESTRQIR-----VGDEVLVRTLGQKGQVID-QLGEREFQV 666
Query: 828 QVGNMK 833
QVG MK
Sbjct: 667 QVGIMK 672
>gi|168215509|ref|ZP_02641134.1| MutS2 family protein [Clostridium perfringens NCTC 8239]
gi|182382254|gb|EDT79733.1| MutS2 family protein [Clostridium perfringens NCTC 8239]
Length = 786
Score = 225 bits (574), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 200/698 (28%), Positives = 326/698 (46%), Gaps = 120/698 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
LRVLE++K+ +A T +E L L + Y D L+ET A++ + + G+
Sbjct: 6 LRVLEFNKIKELAKGYAITKSAKEMVL-DLKPYDSVY-DVKEHLEETKEALDILMRKGNP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L VK AI + L++ LL+ L ++ + + D R
Sbjct: 64 PFE----GLYDVKEAITRAEKGG------VLSIEGLLRIGNMLSVTRKLS-----DFLAR 108
Query: 173 FMP------LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
L M L V R + +I + + + I DSAS L R ++ +
Sbjct: 109 KEEEEEHRILEGMREGLIVLRGVESAISKAIVSEDEIADSASDKLYSIRRSLKEKNSSIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ ++R+ N + L + ++ G R I A+ S GL+ SS+G IEP +
Sbjct: 169 DKVNSIVRS-NAQYLQDSLYTVRGDRYVIPVKAEYKSQVPGLVHDQSSTGATLFIEPTAL 227
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+E+++ E +L L+ + ++D I+ N I++LD + A+A Y G
Sbjct: 228 VNLNNEIKELMLKERAEIERILAELSALVYKNIDVIKVNFNIIVELDFIFAKAKYGSDLG 287
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
GT P + E I L A HPL+
Sbjct: 288 GTMPIV----------------------NEEGVIDLMDARHPLI---------------- 309
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
P + VS+ DI++ R+ L+ITGP
Sbjct: 310 ---------------------------PKDKVVSS---------DIYLGREFSTLLITGP 333
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT GL +M SGL I +SE + + +F+ +FADIGDEQS+ QSLSTFS H+
Sbjct: 334 NTGGKTVTLKTTGLIELMGLSGLLIPASENSSISFFEEIFADIGDEQSIEQSLSTFSSHM 393
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I I+ ++ ++S VL DE+GAGT+P EG AL +S+LE G + ++TTH+ ELK
Sbjct: 394 TNIVKIMEKANNKSFVLFDELGAGTDPTEGAALAISILENLRARGCRI-MSTTHYSELKG 452
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
+ ENA +EF+ L+PTY++L GVPG+S+A I+ RLGL V++ A+++
Sbjct: 453 YALKTENVENASVEFNVETLRPTYRLLIGVPGKSNAFEISRRLGLKDNVIEEAKKVISTE 512
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
S + ++I + + + ++ ++AR +L + K + R K ++F +++
Sbjct: 513 SLQFEDLI---QSLQEKSIKAENDAREAAILRNDAEK--YKNRYK-------EKFERIES 560
Query: 704 ISD-AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ D A AR + A+Q+ SA + + K + L
Sbjct: 561 VRDNVYADAR----REAKQILDSAKEEADAILKNMRDL 594
>gi|406837044|ref|ZP_11096638.1| DNA mismatch repair protein [Lactobacillus vini DSM 20605]
Length = 784
Score = 225 bits (574), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 144/386 (37%), Positives = 228/386 (59%), Gaps = 32/386 (8%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI + + + +VITGPNTGGKTI LKT+GL +M +SGL I + E +++ F +FADIG
Sbjct: 320 DIMLGQDYQTMVITGPNTGGKTITLKTLGLIQLMGQSGLFIPAFEDSQIGVFKEIFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ Q+LSTFS HL I I++ SLVLLDE+GAGT+P EG AL +++L+A A
Sbjct: 380 DEQSIEQNLSTFSAHLTNIVEILNNCDQSSLVLLDELGAGTDPQEGAALAVAILDALAAL 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
GS + +ATTH+ ELK Y NA MEFD L+PTY++L G+PG+S+A I++RLG
Sbjct: 440 GSYV-VATTHYPELKAYGYERLSTINASMEFDSQTLQPTYRLLIGIPGQSNAFAISQRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
L ++ ARQL S ++N++I ++ R + Q E +L + LH +L
Sbjct: 499 LSAEIIAAARQLTSNQSQDLNQMIQDLVRKRQQAEEERARLAKYLTEGQELHHDL----- 553
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
A +F K QK A + ++ +H A Q+ ASQ + +Q++ +A+ S
Sbjct: 554 ----QVAFNKFEK-QK---AHLLEQAKLH--ANQIIDQASQRSDELISELRQMKLNANAS 603
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVS 807
+ K ++T+ +T ++++ P + + V++ +K + ++K P GD V V
Sbjct: 604 V------KEDQLITA---KTKMNELHQPLLSKNRVLRKVKLNQQLK----P--GDDVLVK 648
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMK 833
+ ++GT+++ + K E VQ+G++K
Sbjct: 649 PYDQQGTLLE-KTGKHEWEVQLGSLK 673
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 149/340 (43%), Gaps = 40/340 (11%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE+DK+ V+ + T G++ L L+ + Q L L +AA ++ G
Sbjct: 6 LTTLEYDKIKQQVAQYLVTPAGKK-LLANLYPSSNYQQVQLDLNRTQDAADILRLKGGIP 64
Query: 114 L-DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
L L V L L + L+ N AL L + ++ L+ + +++ + A
Sbjct: 65 LPKLADVHLQLKR-----------LKINAALNGKELAEIAKVLRSAAEVKSFFSQLAIEE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+ L + QL V L K +++ ++EDG + D AS L R + L +L ++
Sbjct: 114 VNLHSLNALANQLQVFPQLTKQLLRSLEEDGHLSDDASVKLAAIRRSMSQLRLQLRSQLN 173
Query: 231 MLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLN 287
LIR ++ + L V +I R I + F G++ S+SG +EP +A+ LN
Sbjct: 174 ALIRGKSAKYLTEPVITIRDDRYVIPVKQEYRGHFGGVVHDQSASGQTLFVEPAAALDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q +A+ + + +L AL+ + + EI + + D NA+A Y+ T P
Sbjct: 234 NRLRQRQANEREEIQRILTALSASLAPYVKEIAANAALLGEFDFANAKAKYAQQLKATYP 293
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
+ + + +YL +A+HPLL
Sbjct: 294 RLSV----------------------DNQVYLRQAWHPLL 311
>gi|313884242|ref|ZP_07818008.1| recombination and DNA strand exchange inhibitor protein
[Eremococcus coleocola ACS-139-V-Col8]
gi|312620689|gb|EFR32112.1| recombination and DNA strand exchange inhibitor protein
[Eremococcus coleocola ACS-139-V-Col8]
Length = 785
Score = 225 bits (574), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 149/421 (35%), Positives = 231/421 (54%), Gaps = 39/421 (9%)
Query: 429 LSPSEMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMM 481
+SP + VS ++ HP V +I I + R L+ITGPNTGGKTI LKT+G+ +M
Sbjct: 294 VSP-DRHVSLIQARHPLLDPKQVVANNIIIGQDYRTLIITGPNTGGKTILLKTLGILHLM 352
Query: 482 AKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLL 541
++GLHI + + +++ FD VFADIGDEQS+ QSLSTFSGH+ +I+ +T QSL+L
Sbjct: 353 GQAGLHIPAQKGSQIGLFDQVFADIGDEQSIEQSLSTFSGHMTNTIDILKHATYQSLLLF 412
Query: 542 DEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 601
DE+G+GT+P EG AL ++L+ +G + T+ATTH+ ELK + NA MEF+
Sbjct: 413 DELGSGTDPQEGAALATAILDYLTGAG-MTTMATTHYPELKVYAHEAPHTINASMEFNAE 471
Query: 602 KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF 661
L PTY++L G+PGRS+A+ I++RLGLP +++ ARQ S INE++ +E + +
Sbjct: 472 TLAPTYRLLIGIPGRSNALEISQRLGLPDYILEKARQGVSQDSQSINEMVANLETERRRL 531
Query: 662 LEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQ 721
E H L + L K+ LRT + + DA LV K+ +
Sbjct: 532 EADHQETEHRLAQADQLLKD-LRT-----------EYDRWVTYKDA------LVEKAKHE 573
Query: 722 LCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSS 781
QA+ K Q++R + T + +HVL ++ D+++ P
Sbjct: 574 ANMKVDQAQKEADKLIQEIRDLQLEQGQNTTI--KEHVLID--KKGKFDQLKQPEN---- 625
Query: 782 VVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVI-KVEPSKEEIVVQVGNMKWIMKFTD 840
++ K R K + VG V V S+G++G+++ KV+ + VQ+G +K + D
Sbjct: 626 -LRKNKVLKRQKAKQELRVGQDVLVHSYGQRGSIVDKVD--DKTFTVQMGILKMNLPAKD 682
Query: 841 I 841
+
Sbjct: 683 L 683
Score = 42.4 bits (98), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 135/314 (42%), Gaps = 43/314 (13%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN----QTYQ----DSLRLLDETNAAIE 105
LE+ K+ +V ++A+T G+ A + L S + +T+Q +L LL + N I
Sbjct: 6 FETLEFGKIRAAVLNYAQTETGKVAIQSMLPSDDLATVETWQAETEQALSLLSQ-NQIIP 64
Query: 106 MQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKE 165
+ + DL+G AI+ ++ + L E V LL +++K+
Sbjct: 65 IPRLN----DLSG--------AIKRLQVGASLNGKELADVGKLL-----------SSVKQ 101
Query: 166 DADLYIR-------FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQV 218
D Y + + L I + V + I I + + E+G + SAS L + R
Sbjct: 102 VHDFYAKQEADNRTYPALYAWIERSIVLKDCIAMIGEAISEEGDVLSSASTELARIRRAQ 161
Query: 219 QMLERKLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIG 275
Q E + ++ +++N N +L + +I + R + AD S KG + SS+G
Sbjct: 162 QQTEEAVRNQLNQILKN-NASALSDTLITIRNNRYVLPVKADHKSQIKGTVHDQSSTGQT 220
Query: 276 SVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNAR 335
IEP S LN+ ++ +L+ L+ ++ ++I + I QLD + +R
Sbjct: 221 LYIEPRSVETLNNRRSHLQSEENNEIAQILMDLSGQLMPYYEDIRQNQYIIGQLDYIQSR 280
Query: 336 ATYSLSFGGTSPNI 349
A+Y P +
Sbjct: 281 ASYGRQLQAVRPKV 294
>gi|386726811|ref|YP_006193137.1| recombination and DNA strand exchange inhibitor protein
[Paenibacillus mucilaginosus K02]
gi|384093936|gb|AFH65372.1| recombination and DNA strand exchange inhibitor protein
[Paenibacillus mucilaginosus K02]
Length = 775
Score = 225 bits (574), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 215/790 (27%), Positives = 370/790 (46%), Gaps = 132/790 (16%)
Query: 62 LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSCSLDLTGVD 120
+ ++ A TSLG+ + + + ++ + R L T+ A+ +++ G
Sbjct: 1 MLERCAAHASTSLGK--SRVEELEPSGSFDEVKRRLQATDEAVNVERLKGGAPFG----G 54
Query: 121 LSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMI 180
+ ++ A+ R L P E L + Q LQ L + I ED + + L +
Sbjct: 55 IRDIRPALHRARIGGMLTPAELLDIALTSQGGRRLQRFLES-INEDYPVPL----LVEST 109
Query: 181 MQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNES 240
+ +++L I Q +DE+ + DSASP L + R +++ E K + ++ ++R + +
Sbjct: 110 EPMTDHKALEDRIRQCIDENAHVVDSASPELARIRSELRGSESKARERLEQMVRTPSIQK 169
Query: 241 LFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARAS 296
+ + V+ + R I + S F G++ S+SG IEP + V +N+ +++
Sbjct: 170 MLQDNLVTIRNDRYVIPVKQEYRSHFGGMIHDQSASGATLFIEPEAVVQMNNRVRE---- 225
Query: 297 VTKAEEDVLLALTEKMQVDLDEIEKMLNGII----QLDVVNARATYSLSFGGTSPNIFLP 352
L L E+ +V ++I +ML+ ++ L VVN L F IF
Sbjct: 226 ---------LKLKEEAEV--EKILRMLSALVAEAADLLVVNVEILGELDF------IFAK 268
Query: 353 QDMKRSLTHE-PVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRR 411
+ R++ P+ ++R + I L + HPL+ +
Sbjct: 269 AGLARTMKATLPLL-----NDRGF-IKLKRGRHPLIASE--------------------- 301
Query: 412 RKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTIC 471
N+ P +D+ + K +++TGPNTGGKT+
Sbjct: 302 ----------------NVVP---------------LDVELGGKYSSIIVTGPNTGGKTVS 330
Query: 472 LKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS 531
LKT+GL +MA SG+ + + E +++ FD+++ADIGDEQS+ Q+LSTFS H+ I I+
Sbjct: 331 LKTIGLLSLMAMSGMFVPAEEGSQLCVFDAIYADIGDEQSIEQNLSTFSSHMTNIIRILR 390
Query: 532 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591
+ T +SLVLLDE+GAGT+P EG+AL +S+L+ G + +ATTH+ ELK Y
Sbjct: 391 EMTPKSLVLLDELGAGTDPAEGSALAISILDYMHRMGCRI-VATTHYTELKAYAYDRQGV 449
Query: 592 ENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI 651
NA MEFD L+PTY++L GVPGRS+A IAERLGL +++NAR G + +I
Sbjct: 450 INASMEFDVQTLRPTYRLLVGVPGRSNAFAIAERLGLSRSIIENARGQVGEEEQRVESMI 509
Query: 652 IEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIA 711
+E+ Q A + ++ L + + R K+ + RF + +
Sbjct: 510 ATLEQNTIQ-------AEAERVTAQELRREVETLREKL--NAERHRFEEQRD-------- 552
Query: 712 RSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDK 771
L+ K+ ++ + ++AR + +LR L + G + S ++ D
Sbjct: 553 -KLLEKAEREGREAVAKARREAEEVIAELR-----RLQREEAGGVKDHKLSELKKKLNDA 606
Query: 772 VEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGN 831
P S K + Q P+ K+ E GD V V++ G++G V+ V + +E VQ+G
Sbjct: 607 A--PELRS----KQVSQLPK-KKPETIGPGDEVLVTNLGQRGHVVDV-VNAQEYTVQLGI 658
Query: 832 MKWIMKFTDI 841
+K + D+
Sbjct: 659 LKMKVNKADL 668
>gi|404494351|ref|YP_006718457.1| DNA mismatch repair ATPase MutS-2 [Pelobacter carbinolicus DSM
2380]
gi|77546354|gb|ABA89916.1| DNA mismatch repair ATPase MutS-2 [Pelobacter carbinolicus DSM
2380]
Length = 788
Score = 225 bits (574), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 227/802 (28%), Positives = 368/802 (45%), Gaps = 144/802 (17%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQ--DSLRLLDETNAAIEMQKH 109
E+LRVLE++K+ ++ T GRE TL L ++ Q ++L + E A E Q
Sbjct: 4 ETLRVLEYNKIVRLLAGHTVTEPGREKTLA-LQPLHDPRQVAEALAEVAEMTALFESQGR 62
Query: 110 ---GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEAL-AVVALLQFSETLQLSLRAAIKE 165
G C ++ A+R + P E L AVV+ L+ + + ++
Sbjct: 63 PPLGGCRE---------LRPALRRLHADGSWLPAEDLLAVVSSLEAASACRGYFDG--QQ 111
Query: 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
A L L + L V +L + I + G I DSAS L R + L ++
Sbjct: 112 SAPL------LAEQASGLTVCNALQREIRASIGSHGEILDSASFELGDLRQSARHLRGRI 165
Query: 226 YQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPL 281
+ ++ ++ E+ +F + V+ +GR + AD KGL+ S+SG +EP
Sbjct: 166 RRKLEDMLHAESFSGVFQDSIVTERNGRYVVPVRADHRGRVKGLIHDESASGQTLFMEPN 225
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ + N+ELQ R + + EE +L L+ +++ +E + + D+ A A +
Sbjct: 226 AVLEGNNELQALRRAEQREEERILRRLSAQVRGQRVALEHNQTLMARFDLRAAAARFGQM 285
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
G +P L +PV I L A HPLL+
Sbjct: 286 CGAVTPQ----------LADKPV------------IDLRDARHPLLM------------- 310
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
G + + +E+ V ID+ + + ++LVI+
Sbjct: 311 -------------VGADGS------------------VEVERAVSIDLKLGQDRQILVIS 339
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGK++ LKT+GL V+M +SGL I +++ F SV ADIGDEQS+ Q LSTFSG
Sbjct: 340 GPNTGGKSVALKTIGLLVLMVRSGLPIPCRADSRIYLFPSVQADIGDEQSIEQHLSTFSG 399
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
HL ++ I+ + ++LVLLDE+G GT+P EG AL M++L+ ++G + T+ATTH +
Sbjct: 400 HLTRLRRIMEECGPETLVLLDELGTGTDPAEGGALAMAMLDHLRDAG-VRTVATTHLNLI 458
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K + D ENA +EFD L+PTY++ +G+PG S A IA RLGLP V+Q A G
Sbjct: 459 KGYAATQDGVENAAVEFDPETLQPTYRLHYGIPGASQAFAIARRLGLPATVLQRAEDYLG 518
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL-------LRTRRKILEHCA 694
+ E+ + +E ++ +H L L + + L R+K+LE
Sbjct: 519 -----------DGEKAGLELMEKINAQQHALELELSEARKLRERARQERARRKKLLEDFE 567
Query: 695 SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG 754
+Q+ Q + D A + A QL A + + K A+Q T+V
Sbjct: 568 AQK----QALQDKA-------RRRADQLVREAERKIKGLLKEARQT---------GTQV- 606
Query: 755 KNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGT 814
Q LTS +Q + + PA+ VK ++P+ + VG+L+ + + +G
Sbjct: 607 PEQARLTSEVRQVREELRQAPAS-----VKGRGKAPKSVK-----VGELLRIPTLRTEGE 656
Query: 815 VIKVEPSKEEIVVQVGNMKWIM 836
V++V+ E+ VQ ++ M
Sbjct: 657 VVRVQGDTVEMTVQGKKLRLAM 678
>gi|357639256|ref|ZP_09137129.1| MutS2 family protein [Streptococcus urinalis 2285-97]
gi|418417299|ref|ZP_12990495.1| MutS2 protein [Streptococcus urinalis FB127-CNA-2]
gi|357587710|gb|EHJ57118.1| MutS2 family protein [Streptococcus urinalis 2285-97]
gi|410871775|gb|EKS19721.1| MutS2 protein [Streptococcus urinalis FB127-CNA-2]
Length = 778
Score = 225 bits (573), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 137/376 (36%), Positives = 213/376 (56%), Gaps = 42/376 (11%)
Query: 444 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF 503
PV D++ + +VITGPNTGGKTI LKT+GLA +M +SGL IL+ + +K+ FD++F
Sbjct: 310 PVANDLYFRDELTEIVITGPNTGGKTIMLKTLGLAQLMGQSGLPILADKGSKIALFDAIF 369
Query: 504 ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 563
ADIGDEQS+ QSLSTFS H+ QI +II + + SLVL DE+GAGT+P EG +L M++LE
Sbjct: 370 ADIGDEQSIEQSLSTFSSHMTQIVSIIEAADANSLVLFDELGAGTDPQEGASLAMAILEH 429
Query: 564 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIA 623
S + T+ATTH+ ELK D+ ENA M FD L+PTY+ + GVPGRS+A IA
Sbjct: 430 LRLS-QVKTMATTHYPELKAYGIETDYVENASMAFDTETLRPTYRFMQGVPGRSNAFEIA 488
Query: 624 ERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF---LEHVHEARHFLMLSRNLHK 680
RLGL ++V +A + ++N +I ++E L+H+ E NL
Sbjct: 489 RRLGLSTVIVNDAENMTDT-DGDVNHIIEQLESQTLDVKKRLDHIKEVEQ-----ENLKF 542
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
N R ++K+ + H+ ++L + +++ +V K A +
Sbjct: 543 N-----------------RALKKLYN------EFSHERDKELAKAVRESQEIVEK-ALEE 578
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+ ++LH K V+ + Q T+ +H + + V+K + K+ P++
Sbjct: 579 SDNILKNLHEKSSLKPHQVIEAKSQLKTLIPEQH--LSQNKVLK------KAKKVRAPHI 630
Query: 801 GDLVHVSSFGKKGTVI 816
GD + V+S+G++GT++
Sbjct: 631 GDDIIVTSYGQRGTLV 646
>gi|228993275|ref|ZP_04153191.1| hypothetical protein bpmyx0001_40070 [Bacillus pseudomycoides DSM
12442]
gi|228766343|gb|EEM14986.1| hypothetical protein bpmyx0001_40070 [Bacillus pseudomycoides DSM
12442]
Length = 786
Score = 225 bits (573), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 148/402 (36%), Positives = 225/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNDIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVLDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 YNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR G + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDRARNHIGTDTNKIENMIAKLEESQKNAEREWNEAEEHRKQSEKLHREL-- 554
Query: 685 TRRKILEHC--ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++H+ +QLR
Sbjct: 555 -QRQIIEFNDERDERLLKAQK-------------EGEEKVEAAKKEAEGIIHE-LRQLRK 599
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
+ L + ++ A+ +VK KQ +VK T +
Sbjct: 600 AQ---------------LANVKDHELIEAKSRLEGAAPELVK--KQRVKVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG ++K + S E VQ+G +K +K +D+
Sbjct: 643 AGDEVKVLTFGQKGQLLK-KVSDNEWNVQIGILKMKVKESDM 683
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 145/302 (48%), Gaps = 19/302 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA---IEMQKH 109
+LRVLE++K+ + +SLGR+ + + S + +++ + + + T+ A I ++ H
Sbjct: 5 TLRVLEYNKVKEQLLEHVASSLGRDKVKSLVPSTD--FEEIVEMQETTDEAAKVIRLKGH 62
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ L G+ ++ ++ + S L P+E L + + + S ++ + + +L
Sbjct: 63 ----VPLGGI--FDIRPNVKRAKIGSMLSPHELLDIASTMYGSRQMKRFIEDMVDNGVEL 116
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + +
Sbjct: 117 PI----LETYVAQIVSLYDLEKKITSCIGDGGEVVDSASDKLRGIRNQIRTAESRIREKL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVP 285
+ + R+ N + + + V+ + R I + G ++ S+SG IEP V
Sbjct: 173 ENMTRSSNAQKMLSDAIVTIRNDRYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVE 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ LQ+AR + E +L+ LTE++ ++ D + + I LD + ARA Y+ T
Sbjct: 233 LNNALQEARVKEKQEVERILMVLTEEVALEADTVLANVEVIANLDFIFARAFYAKRIKAT 292
Query: 346 SP 347
P
Sbjct: 293 KP 294
>gi|336400040|ref|ZP_08580828.1| MutS2 protein [Fusobacterium sp. 21_1A]
gi|336163237|gb|EGN66169.1| MutS2 protein [Fusobacterium sp. 21_1A]
Length = 778
Score = 225 bits (573), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 144/418 (34%), Positives = 226/418 (54%), Gaps = 41/418 (9%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S ++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNREILSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP V+ AR+ + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESVISKAREYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ E L L + + I+E ++ I +S ++ + +
Sbjct: 532 EMRERFARLQEEARLDRERAKQETLIIEKQKNE-------------IIKSAYEEAEKMMN 578
Query: 724 PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVV 783
++A +LV K ++ ++ KN ++L++ ++ VE VV
Sbjct: 579 EMRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VV 626
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K IK K VGD V V S + ++K+ SKE +VQ G +K + F +I
Sbjct: 627 KKIKTKVNFK------VGDRVFVKSINQFANILKINTSKESAMVQAGILKLEVPFNEI 678
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 11/162 (6%)
Query: 186 NRSLIKSIM-QVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE 244
N LI+ ++ + ++ + IKD AS L+ R + L + + + L + + F E
Sbjct: 125 NLRLIEDVINKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFEEPSLSNAFQE 184
Query: 245 --VSSIHGRLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASV 297
++ GR+ D FKGL+ SSSG IEPLS V LN+++++
Sbjct: 185 RIITERDGRMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKE 241
Query: 298 TKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
+ +LL + E ++ + D+I + ++ LD++NA++ Y+
Sbjct: 242 KEEIRKILLRIAELLRNNKDDILTIGEKVMYLDILNAKSIYA 283
>gi|333395595|ref|ZP_08477414.1| MutS family DNA mismatch repair protein [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
Length = 785
Score = 225 bits (573), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 149/423 (35%), Positives = 231/423 (54%), Gaps = 56/423 (13%)
Query: 435 QVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
+VS + HP V DI + + R ++ITGPNTGGKTI LKT+GL +MA++GL
Sbjct: 300 EVSLRQARHPLIDPAKIVANDIILGQDYRAMIITGPNTGGKTITLKTMGLLQLMAQAGLF 359
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
I + E ++V FD++FADIGDEQS+ Q+LSTFSGH+ I +I++Q +SLVL+DE+GAG
Sbjct: 360 IPAGEESQVGVFDNIFADIGDEQSIEQNLSTFSGHMANIVSILAQVDDRSLVLIDELGAG 419
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++L+ + S + +ATTH+ ELK Y+ NA MEFD L+PTY
Sbjct: 420 TDPQEGAALAIAILDQLGTTNSYV-LATTHYPELKAYGYNRPGTINASMEFDVETLQPTY 478
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+L G+PGRS+A IA RLGL +V A+QL A S ++N +I ++E + +
Sbjct: 479 HLLIGIPGRSNAFEIASRLGLADNIVAQAKQLITADSQDLNNMISDLEAQRKAAENERLQ 538
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
A+ L + LH +D A+ + + QQL + +
Sbjct: 539 AKKLLTEAEQLH-------------------------ADLASASTEFISAREQQLDKAKN 573
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+A +V AQ+ + + +H + + Q QQ TV EH A+ + + ++K
Sbjct: 574 KANQIV-DHAQK---ESDRIIHDLREMQKQ-------QQQTVK--EHELIAAKTGLANLK 620
Query: 788 QSPRV---------KRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKF 838
Q + KR + VGD V V+++G+ G ++ + K+ VQ+G +K +
Sbjct: 621 QEKALAKNKVLRHEKRRQALKVGDDVIVTTYGQHGVLLN-QLDKKHWEVQLGILKMKVAV 679
Query: 839 TDI 841
D+
Sbjct: 680 DDL 682
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 140/324 (43%), Gaps = 32/324 (9%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGRE--ATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L +LE+ K+ ++ + +++G+ A LT L Q LDET
Sbjct: 6 LAILEFAKIKQALQQYIVSAMGQAQVAALTPLTDSKAIQQQ----LDETK---------- 51
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKED--- 166
G D+ +K I + AS + LA+ L E ++ LRAA D
Sbjct: 52 -----DGADILRLKGPIPIPQLASVASHMQRLAIGGTLNGVELAEIGRVLRAANAVDRFF 106
Query: 167 ---ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
AD I + + QL L K + ++EDG + D AS LK R + LE
Sbjct: 107 IEFADEEITLRQVDAIQAQLVTLPELTKRLRLSLEEDGHVTDDASVKLKGIRNGIHQLEG 166
Query: 224 KLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEP 280
++ Q M R + + L + +I + R I + + F G++ S+SG+ IEP
Sbjct: 167 EIRQKMTGYTRGNSAKYLSDPIITIRNDRYVIPVKQEYRAHFGGVVHDQSASGLTLFIEP 226
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
S + LN+ L+Q + + + +L L+E + DEI + + QLD +NA+A Y+
Sbjct: 227 QSVMDLNNRLRQRQLEEQQEIQRILAELSEAIAPYQDEITQNATILGQLDFINAKARYAK 286
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPV 364
+ T P + L ++ P+
Sbjct: 287 AIKATEPLLNLDNEVSLRQARHPL 310
>gi|336420684|ref|ZP_08600846.1| hypothetical protein HMPREF0993_00223 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336005916|gb|EGN35959.1| hypothetical protein HMPREF0993_00223 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 791
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 202/728 (27%), Positives = 334/728 (45%), Gaps = 126/728 (17%)
Query: 124 VKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQL 183
V +++ + + L E L + LL+ + ++ R ++++ Y L + QL
Sbjct: 71 VGDSLKRLEVGAALGSGELLRICKLLETAGRVKSYGRHETSDESEDY-----LDALFQQL 125
Query: 184 FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFL 243
L I + + E+ I D ASPALK+ R + + K++ + L+ L
Sbjct: 126 EPVAPLSAEIRRCILEEDEISDDASPALKRIRRSMGQINDKVHATLSGLVNGSLRAYLQD 185
Query: 244 EVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKA 300
+ ++ G R CI ++ S +GL+ SS+G IEP+S V LN++L++ K
Sbjct: 186 PIITMRGDRYCIPVKSEYRSQVQGLIHDQSSTGSTLFIEPMSVVKLNNDLKELYG---KE 242
Query: 301 EEDVLLALTEKMQVD----LDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+E++ + L ++ VD +D I + + +LD + AR +L DM
Sbjct: 243 QEEIQVILA-RLSVDVAEYIDAIRTDYSVLTELDFIFARGILAL-------------DMN 288
Query: 357 RSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYG 416
S+ P+ + + IY+ + HPLL K+K
Sbjct: 289 ASM---PLFNT------DGRIYIREGRHPLL---DKKKV--------------------- 315
Query: 417 GNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVG 476
VPI + + +L+ITGPNTGGKT+ LKTVG
Sbjct: 316 ----------------------------VPITVMLGDAFDLLIITGPNTGGKTVSLKTVG 347
Query: 477 LAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQ 536
L +M ++GLHI + + +++ F V+ADIGDEQS+ QSLSTFS H+ I + + Q +
Sbjct: 348 LFTLMGQAGLHIPALDRSELAVFHDVYADIGDEQSIEQSLSTFSSHMTNIVSFLKQVDER 407
Query: 537 SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM 596
SLVL DE+GAGT+P EG AL +++L G + T+ATTH+ ELK S ENAC
Sbjct: 408 SLVLFDELGAGTDPTEGAALAIAILNHLHGRG-IRTMATTHYSELKVYALSTPGVENACC 466
Query: 597 EFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMER 656
EFD L+PTY +L G+PG+S+A IA +LGLP +++ AR +++ ++E
Sbjct: 467 EFDLETLRPTYHLLIGIPGKSNAFAIAGKLGLPDYIIEEARTHLTEQDESFEDLLTDLET 526
Query: 657 FKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVH 716
K + E + R L + T+ K E +QR R +++ ++ A S++
Sbjct: 527 SKRTIQKEQEEIAAY---RRELERLKAETKEK-QERLEAQRERILREANEK---AHSIL- 578
Query: 717 KSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPA 776
+ A+ + + R +S+ ++ K + L
Sbjct: 579 ----------ADAKETADETMRNFRKFGKESISAAEMEKERERLRKKMD----------- 617
Query: 777 TASSSVVKDIKQSPRVKRTELPN---VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
A+ S +K Q PR + P +G+ V V S GTV + SK + VQ+G ++
Sbjct: 618 -AARSGMKMEPQKPR--KQHKPGDFKLGESVKVLSMNLTGTVTALPDSKGNVTVQMGILR 674
Query: 834 WIMKFTDI 841
+ +D+
Sbjct: 675 SQVNISDL 682
>gi|336393179|ref|ZP_08574578.1| MutS family DNA mismatch repair protein [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 785
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 149/423 (35%), Positives = 230/423 (54%), Gaps = 56/423 (13%)
Query: 435 QVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
+VS + HP V DI + + R ++ITGPNTGGKTI LKT+GL +MA++GL
Sbjct: 300 EVSLRQARHPLIDPAKIVANDIILGQDYRAMIITGPNTGGKTITLKTMGLLQLMAQAGLF 359
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
I + E ++V FD++FADIGDEQS+ Q+LSTFSGH+ I +I++Q +SLVL+DE+GAG
Sbjct: 360 IPAGEESQVGVFDNIFADIGDEQSIEQNLSTFSGHMANIVSILAQVDDRSLVLIDELGAG 419
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++L+ + S + +ATTH+ ELK Y+ NA MEFD L+PTY
Sbjct: 420 TDPQEGAALAIAILDQLGTTNSYV-LATTHYPELKAYGYNRPGTINASMEFDVETLQPTY 478
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+L G+PGRS+A IA RLGL +V A+QL A S ++N +I ++E + +
Sbjct: 479 HLLIGIPGRSNAFEIASRLGLADNIVAQAKQLITADSQDLNNMISDLEAQRKAAENERLQ 538
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
A+ L + LH +D A+ + + QQL +
Sbjct: 539 AKKLLTEAEQLH-------------------------ADLASASTEFISAREQQLDKAKD 573
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+A +V AQ+ + + +H + + Q QQ TV EH A+ + + ++K
Sbjct: 574 KANQIV-DHAQK---ESDRIIHDLREMQKQ-------QQQTVK--EHELIAAKTGLANLK 620
Query: 788 QSPRV---------KRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKF 838
Q + KR + VGD V V+++G+ G ++ + K+ VQ+G +K +
Sbjct: 621 QEKALAKNKVLRHEKRRQALKVGDDVIVTTYGQHGVLLN-QLDKKHWEVQLGILKMKVAV 679
Query: 839 TDI 841
D+
Sbjct: 680 DDL 682
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 140/324 (43%), Gaps = 32/324 (9%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGRE--ATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L +LE+ K+ ++ + +++G+ A LT L Q +DET
Sbjct: 6 LAILEFAKIKQALQQYIVSAMGQAQVAALTPLTDSKAIQQQ----IDETK---------- 51
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKED--- 166
G D+ +K I + AS + LA+ L E ++ LRAA D
Sbjct: 52 -----DGTDILRLKGPIPIPQLASVASHMQRLAIGGTLNGIELAEIGRVLRAANAVDRFF 106
Query: 167 ---ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
AD I + + QL L K + ++EDG + D AS LK R + LE
Sbjct: 107 IEFADEEITLRQVDAIQAQLVTLPELTKRLRLSLEEDGHVTDDASVKLKGIRNGIHQLEG 166
Query: 224 KLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEP 280
++ Q M R + + L + +I + R I + + F G++ S+SG+ IEP
Sbjct: 167 EIRQKMTGYTRGNSAKYLSDPIITIRNDRYVIPVKQEYRAHFGGVVHDQSASGLTLFIEP 226
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
S + LN+ L+Q + + + +L L+E + DEI + + QLD +NA+A Y+
Sbjct: 227 QSVMDLNNRLRQRQLEEQQEIQRILAELSEAIAPYQDEITQNATILGQLDFINAKARYAK 286
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPV 364
+ T P + L ++ P+
Sbjct: 287 AIKATEPLLNLDNEVSLRQARHPL 310
>gi|319647266|ref|ZP_08001488.1| MutS2 protein [Bacillus sp. BT1B_CT2]
gi|317390613|gb|EFV71418.1| MutS2 protein [Bacillus sp. BT1B_CT2]
Length = 785
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 150/403 (37%), Positives = 217/403 (53%), Gaps = 33/403 (8%)
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
L L VP DI + + +VITGPNTGGKT+ LKT+GL MMA+SGLH+ + E ++
Sbjct: 312 LPLDEVVPNDIELGGEYTTIVITGPNTGGKTVTLKTLGLLTMMAQSGLHVPAEEGSETAV 371
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
FD VFADIGDEQS+ QSLSTFS H+ I +I+ T SLVL DE+GAGT+P EG AL +
Sbjct: 372 FDQVFADIGDEQSIEQSLSTFSSHMVNIVDILKDMTENSLVLFDELGAGTDPQEGAALAI 431
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
S+L+ ++G+ + IATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+
Sbjct: 432 SILDEVCQTGARV-IATTHYPELKAYGYNRENVINASVEFDIDTLSPTYKLLIGVPGRSN 490
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A I++RLGLP ++ A+ A E++ +I +E K + + E + L
Sbjct: 491 AFEISKRLGLPDYLIGRAKAEMTAEHNEVDTMIASLEDSKKRAEAELKETEAIRAEAEAL 550
Query: 679 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
H++ L+ S+ K K+ + A K+A+++ + +A ++
Sbjct: 551 HRD--------LQQQISEWQEKKDKLYEEAE------QKAAEKVKAAMKEADDII----- 591
Query: 739 QLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP 798
QSL K H + + K A S K Q KR P
Sbjct: 592 -------QSLRMI---KEDHKAFKDHELIEAKKRLEEAVPSFEKAKKPAQKKTDKRELKP 641
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KGT+++ + E VQ+G +K +K D+
Sbjct: 642 --GDEVKVLTFGQKGTLLE-KTGAAEWNVQIGILKMKVKEKDL 681
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 126/264 (47%), Gaps = 15/264 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETN-AAIEMQKHGS 111
+L LE+ K+ ++ A +SLG+E L +++ ++ +L +E + A ++ GS
Sbjct: 5 ALSALEFHKVKEQLTEHAASSLGKEMLLE--LKPSRSLEEVKKLQEEVDEAGTVLRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++ A+R S L P E + LL ++ ++ L ++ ++
Sbjct: 63 APFG----GLTDIRKALRRAEIGSILSPAELTEISGLLYAAKQMKHFLEGLFEDGVEIPY 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L Q +L L + I +D+ G + D AS L+ R Q++ LE ++ ++
Sbjct: 119 ----LHQYAEKLIPLSELERDINSCIDDHGEVLDHASETLRGIRTQLRTLESRIRDRLES 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R+ + + + + ++ + R I + S G ++ SSSG IEP + V +N
Sbjct: 175 MLRSSSAQKMLSDTIITIRNDRFVIPVKQEYRSSYGGIVHDQSSSGATLFIEPQAIVDMN 234
Query: 288 DELQQARASVTKAEEDVLLALTEK 311
+ L+QA+ + + E +L LTEK
Sbjct: 235 NALRQAKVNEKQEIERILRVLTEK 258
>gi|167760788|ref|ZP_02432915.1| hypothetical protein CLOSCI_03173 [Clostridium scindens ATCC 35704]
gi|167661675|gb|EDS05805.1| MutS2 family protein [Clostridium scindens ATCC 35704]
Length = 791
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 202/728 (27%), Positives = 334/728 (45%), Gaps = 126/728 (17%)
Query: 124 VKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQL 183
V +++ + + L E L + LL+ + ++ R ++++ Y L + QL
Sbjct: 71 VGDSLKRLEVGAALGSGELLRICKLLETAGRVKSYGRHETSDESEDY-----LDALFQQL 125
Query: 184 FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFL 243
L I + + E+ I D ASPALK+ R + + K++ + L+ L
Sbjct: 126 EPVAPLSAEIRRCILEEDEISDDASPALKRIRRSMGQINDKVHATLSGLVNGSLRAYLQD 185
Query: 244 EVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKA 300
+ ++ G R CI ++ S +GL+ SS+G IEP+S V LN++L++ K
Sbjct: 186 PIITMRGDRYCIPVKSEYRSQVQGLIHDQSSTGSTLFIEPMSVVKLNNDLKELYG---KE 242
Query: 301 EEDVLLALTEKMQVD----LDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+E++ + L ++ VD +D I + + +LD + AR +L DM
Sbjct: 243 QEEIQVILA-RLSVDVAEYIDAIRTDYSVLTELDFIFARGILAL-------------DMN 288
Query: 357 RSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYG 416
S+ P+ + + IY+ + HPLL K+K
Sbjct: 289 ASM---PLFNT------DGRIYIREGRHPLL---DKKKV--------------------- 315
Query: 417 GNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVG 476
VPI + + +L+ITGPNTGGKT+ LKTVG
Sbjct: 316 ----------------------------VPITVMLGDAFDLLIITGPNTGGKTVSLKTVG 347
Query: 477 LAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQ 536
L +M ++GLHI + + +++ F V+ADIGDEQS+ QSLSTFS H+ I + + Q +
Sbjct: 348 LFTLMGQAGLHIPALDRSELAVFHDVYADIGDEQSIEQSLSTFSSHMTNIVSFLKQVDER 407
Query: 537 SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM 596
SLVL DE+GAGT+P EG AL +++L G + T+ATTH+ ELK S ENAC
Sbjct: 408 SLVLFDELGAGTDPTEGAALAIAILNHLHGRG-IRTMATTHYSELKVYALSTPGVENACC 466
Query: 597 EFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMER 656
EFD L+PTY +L G+PG+S+A IA +LGLP +++ AR +++ ++E
Sbjct: 467 EFDLETLRPTYHLLIGIPGKSNAFAIAGKLGLPDYIIEEARTHLTEQDESFEDLLTDLET 526
Query: 657 FKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVH 716
K + E + R L + T+ K E +QR R +++ ++ A S++
Sbjct: 527 SKRTIQKEQEEIAAY---RRELERLKAETKEK-QERLEAQRERILREANEK---AHSIL- 578
Query: 717 KSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPA 776
+ A+ + + R +S+ ++ K + L
Sbjct: 579 ----------ADAKETADETMRNFRKFGKESISAAEMEKERERLRKKMD----------- 617
Query: 777 TASSSVVKDIKQSPRVKRTELPN---VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
A+ S +K Q PR + P +G+ V V S GTV + SK + VQ+G ++
Sbjct: 618 -AARSGMKMEPQKPR--KQHKPGDFKLGESVKVLSMNLTGTVTALPDSKGNVTVQMGILR 674
Query: 834 WIMKFTDI 841
+ +D+
Sbjct: 675 SQVNISDL 682
>gi|52081359|ref|YP_080150.1| recombination and DNA strand exchange inhibitor protein [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|404490236|ref|YP_006714342.1| recombination and DNA strand exchange inhibitor protein [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|81690944|sp|Q65GE2.1|MUTS2_BACLD RecName: Full=MutS2 protein
gi|52004570|gb|AAU24512.1| DNA mismatch repair protein MutSB [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52349238|gb|AAU41872.1| DNA mismatch repair protein MutS [Bacillus licheniformis DSM 13 =
ATCC 14580]
Length = 785
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 150/403 (37%), Positives = 217/403 (53%), Gaps = 33/403 (8%)
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
L L VP DI + + +VITGPNTGGKT+ LKT+GL MMA+SGLH+ + E ++
Sbjct: 312 LPLDEVVPNDIELGGEYTTIVITGPNTGGKTVTLKTLGLLTMMAQSGLHVPAEEGSETAV 371
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
FD VFADIGDEQS+ QSLSTFS H+ I +I+ T SLVL DE+GAGT+P EG AL +
Sbjct: 372 FDQVFADIGDEQSIEQSLSTFSSHMVNIVDILKDMTENSLVLFDELGAGTDPQEGAALAI 431
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
S+L+ ++G+ + IATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+
Sbjct: 432 SILDEVCQTGARV-IATTHYPELKAYGYNRENVINASVEFDIDTLSPTYKLLIGVPGRSN 490
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A I++RLGLP ++ A+ A E++ +I +E K + + E + L
Sbjct: 491 AFEISKRLGLPDYLIGRAKAEMTAEHNEVDTMIASLEDSKKRAEAELKETEAIRAEAEAL 550
Query: 679 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
H++ L+ S+ K K+ + A K+A+++ + +A ++
Sbjct: 551 HRD--------LQQQISEWQEKKDKLYEEAE------QKAAEKVKAAMKEADDII----- 591
Query: 739 QLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP 798
QSL K H + + K A S K Q KR P
Sbjct: 592 -------QSLRMI---KEDHKAFKDHELIEAKKRLEEAVPSFEKAKKPAQKKTDKRELKP 641
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KGT+++ + E VQ+G +K +K D+
Sbjct: 642 --GDEVKVLTFGQKGTLLE-KTGAAEWNVQIGILKMKVKEKDL 681
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 126/264 (47%), Gaps = 15/264 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETN-AAIEMQKHGS 111
+L LE+ K+ ++ A +SLG+E L +++ ++ +L +E + A ++ GS
Sbjct: 5 ALSALEFHKVKEQLTEHAASSLGKEMLLE--LKPSRSLEEVKKLQEEVDEAGTVLRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L+ ++ A+R S L P E + LL ++ ++ L ++ ++
Sbjct: 63 APFG----GLTDIRKALRRAEIGSILSPAELTEISGLLYAAKQMKHFLEGLFEDGVEIPY 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L Q +L L + I +D+ G + D AS L+ R Q++ LE ++ ++
Sbjct: 119 ----LHQYAEKLIPLSELERDINSCIDDHGEVLDHASETLRGIRTQLRTLESRIRDRLES 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R+ + + + + ++ + R I + S G ++ SSSG IEP + V +N
Sbjct: 175 MLRSSSAQKMLSDTIITIRNDRFVIPVKQEYRSSYGGIVHDQSSSGATLFIEPQAIVDMN 234
Query: 288 DELQQARASVTKAEEDVLLALTEK 311
+ L+QA+ + + E +L LTEK
Sbjct: 235 NALRQAKVNEKQEIERILRVLTEK 258
>gi|407796063|ref|ZP_11143019.1| DNA mismatch repair protein MutS [Salimicrobium sp. MJ3]
gi|407019417|gb|EKE32133.1| DNA mismatch repair protein MutS [Salimicrobium sp. MJ3]
Length = 781
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 178/613 (29%), Positives = 294/613 (47%), Gaps = 96/613 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA---IEMQKHG 110
L VLE+ K+ ++ +A TSLG++A Q + + ++L +ET+ A + ++ H
Sbjct: 6 LGVLEFGKIIEKLTGYAETSLGKDAA--QRLKPSTELPEVVKLQNETDEAQQVLRLKGH- 62
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
+ G+ +K ++ L E + V + + L+ + E+ D+
Sbjct: 63 ---IPFGGI--RNIKPHLKRTSIGGVLSATECVDVATTIYGGKELKRFVEEM--EEPDMP 115
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I L +I L + L ++I +D++G + D AS L+ R ++ LE +L M+
Sbjct: 116 I-LRELVDIIHPLPI---LERTIRNSIDDNGVVMDGASDTLRSIRSRINTLESRLRDKME 171
Query: 231 MLIRNENNESLFLEVSSIHGRLCIRTGADQL--SFKGLLLS-SSSGIGSVIEPLSAVPLN 287
+ ++ E L + +I + + S KG++ SSSG IEP V +N
Sbjct: 172 SYTKQQS-EKLSDAIVTIRNERYVLPVKQEYRGSIKGIVHDQSSSGATLFIEPQPVVDIN 230
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
++LQ+AR + + +L L+E ++ D + + + + LD + ARA S G P
Sbjct: 231 NDLQEARVQEKREVDRILGELSEAIEEDRPILAENVRVLAGLDFIFARAKLGRSMGAAMP 290
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
+ E I + +A HPL+
Sbjct: 291 AM----------------------NNEGRILMKQARHPLI-------------------- 308
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
SE +V VP DI + ++ITGPNTGG
Sbjct: 309 ------------------------SEEEV--------VPNDIELGTDFTSIIITGPNTGG 336
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LK VGL +MA++GL I + + ++ FD+V+ADIGDEQS+ QSLSTFS H+ I
Sbjct: 337 KTVTLKLVGLCTLMAQAGLQIPAMDGCELAVFDNVYADIGDEQSIEQSLSTFSSHMTNIV 396
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
+I+ + +LVL DE+GAGT+P EG AL M++L+ + + + IATTH+ ELK Y+
Sbjct: 397 DILDKVDDSTLVLFDELGAGTDPQEGAALAMAILDEVVDKDARV-IATTHYPELKAYGYN 455
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
+ NA +EF+ L+PTY++L GVPGRS+A I+ RLGL V+ A++ G S +
Sbjct: 456 RENVVNASVEFNIETLEPTYRLLIGVPGRSNAFEISRRLGLREDVISAAKERVGVDSESV 515
Query: 648 NEVIIEMERFKTQ 660
+I ++ + +
Sbjct: 516 ESMIASLDEARRE 528
>gi|420145859|ref|ZP_14653308.1| MutS2 protein [Lactobacillus coryniformis subsp. coryniformis CECT
5711]
gi|398402478|gb|EJN55814.1| MutS2 protein [Lactobacillus coryniformis subsp. coryniformis CECT
5711]
Length = 785
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 149/423 (35%), Positives = 230/423 (54%), Gaps = 56/423 (13%)
Query: 435 QVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
+VS + HP V DI + + R ++ITGPNTGGKTI LKT+GL +MA++GL
Sbjct: 300 EVSLRQARHPLINPAKIVANDIILGQDYRAMIITGPNTGGKTITLKTMGLLQLMAQAGLF 359
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
I + E ++V FD++FADIGDEQS+ Q+LSTFSGH+ I +I++Q +SLVL+DE+GAG
Sbjct: 360 IPAGEESQVGVFDNIFADIGDEQSIEQNLSTFSGHMANIVSILAQVDDRSLVLIDELGAG 419
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++L+ + S + +ATTH+ ELK Y+ NA MEFD L+PTY
Sbjct: 420 TDPQEGAALAIAILDQLGTTNSYV-LATTHYPELKAYGYNRPGTINASMEFDVETLQPTY 478
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+L G+PGRS+A IA RLGL +V A+QL A S ++N +I ++E + +
Sbjct: 479 HLLIGIPGRSNAFEIASRLGLADNIVAQAKQLITADSQDLNNMISDLEAQRKAAENERLQ 538
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
A+ L + LH +D A+ + + QQL +
Sbjct: 539 AKKLLTEAEQLH-------------------------ADLASASTEFISAREQQLDKAKD 573
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+A +V AQ+ + + +H + + Q QQ TV EH A+ + + ++K
Sbjct: 574 KANQIV-DHAQK---ESDRIIHDLREMQKQ-------QQQTVK--EHELIAAKTGLANLK 620
Query: 788 QSPRV---------KRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKF 838
Q + KR + VGD V V+++G+ G ++ + K+ VQ+G +K +
Sbjct: 621 QEKALAKNKVLRHEKRRQALKVGDDVIVTTYGQHGVLLN-QLDKKHWEVQLGILKMKVAV 679
Query: 839 TDI 841
D+
Sbjct: 680 DDL 682
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 84/324 (25%), Positives = 140/324 (43%), Gaps = 32/324 (9%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGRE--ATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L +LE+ K+ ++ + +++G+ A LT L Q LDET
Sbjct: 6 LAILEFAKIKQALQQYIVSAMGQAQVAALTPLTDSKAIQQQ----LDETK---------- 51
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKED--- 166
G D+ +K I + AS + LA+ L E ++ LRAA D
Sbjct: 52 -----DGADILRLKGPIPIPQLASVASHMQRLAIGGTLNGVELAEIGRVLRAANAVDRFF 106
Query: 167 ---ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
AD I + + QL L K + ++EDG + D AS LK R + LE
Sbjct: 107 IEFADEEITLRQVDAIQAQLVTLPELTKRLRLSLEEDGHVTDDASVKLKGIRNGIHQLEG 166
Query: 224 KLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEP 280
++ Q M R + + L + +I + R I + + F G++ S+SG+ IEP
Sbjct: 167 EIRQKMTGYTRGNSAKYLSDPIITIRNDRYVIPVKQEYRAHFGGVVHDQSASGLTLFIEP 226
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
S + LN+ L+Q + + + +L L+E + DEI + + QLD +NA+A Y+
Sbjct: 227 QSVMDLNNRLRQRQLEEQQEIQRILAELSEAIAPYQDEITQNATILGQLDFINAKARYAK 286
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPV 364
+ T P + L ++ P+
Sbjct: 287 AIKATEPLLNLDNEVSLRQARHPL 310
>gi|307244041|ref|ZP_07526160.1| putative recombination and DNA strand exchange inhibitor protein
[Peptostreptococcus stomatis DSM 17678]
gi|306492565|gb|EFM64599.1| putative recombination and DNA strand exchange inhibitor protein
[Peptostreptococcus stomatis DSM 17678]
Length = 807
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 224/812 (27%), Positives = 367/812 (45%), Gaps = 147/812 (18%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSL 114
+VLE DK+ + + A +SLG ++ + T+++ +ET A S +
Sbjct: 7 KVLELDKIIDMLKAKATSSLG--LSMIEKLRPMSTFEEVKTAQEETTEA------QSILI 58
Query: 115 DLTGVDLSLVKSAIREVRRA---SPLRPNEALAVVALLQFSETLQLSLRAAIK------- 164
+ V L + + +RA + L P L + ++ + L L IK
Sbjct: 59 NRGHVPLEGIHDIGDKAKRADLGAVLEPKSLLDLADTMRATRVLSNVLSGQIKKETFGNS 118
Query: 165 ----EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQM 220
++ D I++ + + L++++ + + I + + I DSASP L+ R ++
Sbjct: 119 ETSIDEEDDEIKYPIIQSLATSLYIHKDIEEEIFNAIISELEIADSASPELRSIRRRILQ 178
Query: 221 LERKLYQLMDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGS 276
+ + ++ +I + + + + S+ G R + A+ S ++ SSSG
Sbjct: 179 KNQSIRSKLNGIISSTTYQKYLQDAIISMRGDRFVVPVKAEYRSMMAGIIHDQSSSGATL 238
Query: 277 VIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARA 336
IEP++ V +N++L+Q L L EK +EIEK+L A
Sbjct: 239 FIEPMTIVEMNNDLRQ-------------LKLQEK-----EEIEKIL------------A 268
Query: 337 TYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQ 396
S G S + Q++ L K+S KA P L Q
Sbjct: 269 NLSAMVGQVSRELLSNQEILAKLDFAFAKGKLSID--------MKATEPDLNQD------ 314
Query: 397 QAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTR 456
R ++ GG L+ V DI +
Sbjct: 315 -------------RLVRIVGGRHP-----------------LLDRKSVVANDIILGGDYS 344
Query: 457 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSL 516
L+ITGPNTGGKT+ +KT+GL +M + GLH+ ++ + FD +FADIGD+QS+ Q+L
Sbjct: 345 TLLITGPNTGGKTVTIKTLGLFALMTQCGLHLSANYGTSMCIFDQIFADIGDDQSIEQNL 404
Query: 517 STFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 576
STFS H+ +I +I+ + T QSLV+ DE+GAGT+P EG AL +++LE SG+ IATT
Sbjct: 405 STFSSHMTRIVDIVERVTDQSLVIFDELGAGTDPEEGAALAIAILENIRSSGA-SCIATT 463
Query: 577 HHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 636
H+ ELK + ENA +EFD L PTY++L GVPG+S+A I+ +LGL ++ A
Sbjct: 464 HYSELKKYALAKKDVENAAVEFDMGTLSPTYRLLIGVPGKSNAFEISRKLGLGEHIIDQA 523
Query: 637 RQLYGAASAEINEVI--IEMERFKTQFLEHVHEARHFLMLSRNLH-------KNLLRTRR 687
+ EI EV+ +E R KTQ E + A + ++ + L +++
Sbjct: 524 KNFLTNEDIEIEEVLQNVEKSRLKTQ--EELERAERYRQEIEDIKLDYQAKLEKLDKSKA 581
Query: 688 KILEHCASQRFRKV-QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQ 746
K+LE+ SQ F V Q D A+ + + + +L S + R R +++R Q
Sbjct: 582 KVLENARSQAFSIVRQAKEDTDAMIKEI--RKTDRLKDSREKDR-----RLEEIRKKIGQ 634
Query: 747 SLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHV 806
S+ GK F Q +V+ + P AS + +T P G V++
Sbjct: 635 SM-----GK--------F-QPSVESMVVPKYASKEI-----------KTLKP--GTDVNI 667
Query: 807 SSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKF 838
+ + GTVI + K+E +VQVG MK + +
Sbjct: 668 ITLRQDGTVISADDKKKEAIVQVGIMKMSLPY 699
>gi|336419167|ref|ZP_08599433.1| MutS2 protein [Fusobacterium sp. 11_3_2]
gi|336163858|gb|EGN66772.1| MutS2 protein [Fusobacterium sp. 11_3_2]
Length = 778
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 143/418 (34%), Positives = 226/418 (54%), Gaps = 41/418 (9%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S ++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNKEILSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ AR+ + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESIISKAREYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ E L L + + I+E ++ I +S ++ + +
Sbjct: 532 EMRERFARLQEEARLDRERAKQETLIIEKQKNE-------------IIKSAYEEAEKMMN 578
Query: 724 PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVV 783
++A +LV K ++ ++ KN ++L++ ++ VE VV
Sbjct: 579 EMRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VV 626
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K IK K VGD V V S + ++K+ SKE +VQ G +K + F +I
Sbjct: 627 KKIKTKVNFK------VGDRVFVKSINQFANILKINTSKESAMVQAGILKLEVPFNEI 678
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 10/154 (6%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L + + F E ++ G
Sbjct: 133 INKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFEEPSLSNAFQERIITERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
L + E ++ + D+I + ++ LD++NA++ Y+
Sbjct: 250 LRIAELLRNNKDDILIIGEKVMYLDILNAKSIYA 283
>gi|182626137|ref|ZP_02953897.1| MutS2 family protein [Clostridium perfringens D str. JGS1721]
gi|422874800|ref|ZP_16921285.1| recombination and DNA strand exchange inhibitor protein
[Clostridium perfringens F262]
gi|177908574|gb|EDT71099.1| MutS2 family protein [Clostridium perfringens D str. JGS1721]
gi|380304441|gb|EIA16730.1| recombination and DNA strand exchange inhibitor protein
[Clostridium perfringens F262]
Length = 786
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 200/698 (28%), Positives = 326/698 (46%), Gaps = 120/698 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
LRVLE++K+ V +A T +E L L + Y D L+ET A++ + + G+
Sbjct: 6 LRVLEFNKIKELVKGYAITKSAKEMVL-DLKPYDSVY-DVKEHLEETKEALDILMRKGNP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L VK AI + L++ LL+ L ++ + + D R
Sbjct: 64 PFE----GLYDVKEAITRAEKGG------VLSIEGLLRIGNMLSVTRKLS-----DFLAR 108
Query: 173 FMP------LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
L M L V R + +I + + + I DSAS L R ++ +
Sbjct: 109 KEEEEEHRILEGMREGLIVLRGVESAISKAIVSEDEIADSASDKLYSIRRSLKEKNSSIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
++ ++R+ N + L + ++ G R I A+ S GL+ SS+G IEP +
Sbjct: 169 DKVNSIVRS-NAQYLQDSLYTVRGDRYVIPVKAEYKSQVPGLVHDQSSTGATLFIEPTAL 227
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+E+++ E +L L+ + ++D I+ N I++LD + A+A Y
Sbjct: 228 VNLNNEIKELMLKERAEIERILAELSALVYKNIDVIKVNFNIIVELDFIFAKAKYGSDLD 287
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
GT P + E I L A HPL+
Sbjct: 288 GTMPIV----------------------NEEGVIDLMDARHPLI---------------- 309
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
P + VS+ DI++ R+ L+ITGP
Sbjct: 310 ---------------------------PKDKVVSS---------DIYLGREFSTLLITGP 333
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT GL +M SGL I +SE + + +F+ +FADIGDEQS+ QSLSTFS H+
Sbjct: 334 NTGGKTVTLKTTGLIELMGLSGLLIPASENSSISFFEEIFADIGDEQSIEQSLSTFSSHM 393
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I I+ ++ ++S VL DE+GAGT+P EG AL +S+LE G + ++TTH+ ELK
Sbjct: 394 TNIVKIMEKANNKSFVLFDELGAGTDPTEGAALAISILENLRARGCRI-MSTTHYSELKG 452
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
+ ENA +EF+ L+PTY++L GVPG+S+A I+ RLGL V++ A+++
Sbjct: 453 YALKTENVENASVEFNVETLRPTYRLLIGVPGKSNAFEISRRLGLKDNVIEEAKKVISTE 512
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
S + ++I + + + ++ ++AR +L + K + R K ++F +++
Sbjct: 513 SLQFEDLI---QSLQEKSIKAENDAREAAILRNDAEK--YKNRYK-------EKFERIES 560
Query: 704 ISD-AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ D A AR + A+Q+ SA + + K + L
Sbjct: 561 VRDNVYADAR----REAKQILDSAKEEADAILKNMRDL 594
>gi|392391882|ref|YP_006428484.1| DNA mismatch repair protein, MutS family [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390522960|gb|AFL98690.1| DNA mismatch repair protein, MutS family [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 789
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 142/419 (33%), Positives = 224/419 (53%), Gaps = 49/419 (11%)
Query: 435 QVSALELAHP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
++S ++ HP VP+ I + + +V+TGPNTGGKT+ LKT+GL MA+ GLHI
Sbjct: 300 EISLVQARHPLLTGKVVPLTIQLGTRFDTVVVTGPNTGGKTVALKTIGLLAAMAQCGLHI 359
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ ++V F +FADIGDEQS+ QSLSTFSGH+K I I+ ++ +SL+LLDE+GAGT
Sbjct: 360 PAESDSRVGVFTQIFADIGDEQSVEQSLSTFSGHMKNIVEIVQKADRRSLILLDEVGAGT 419
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG+AL M+++ E G+ + +ATTH+G LK Y+ ENA +EFD L+PTY+
Sbjct: 420 DPTEGSALAMAIIAELHERGARI-VATTHYGALKNFAYNTTRVENASVEFDSESLRPTYR 478
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
+L G+PG+S+A IA RLGLP V+ AR ++ ++I +E + +
Sbjct: 479 LLVGIPGKSNAFYIAGRLGLPEGVLDRARTFVTEREMQVADLIENLEDTQREI------- 531
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
+L K R R+ +E + K QK+ D + L+ + Q +
Sbjct: 532 --------DLEKRRAREERQAIEKESIGLKEKSQKLEDE---YQELMAMAKDQAVEIVRE 580
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQ-----QTTVDKVEHPATASSSV- 782
AR + +L+ L + K+Q + Q V + + PA A+ V
Sbjct: 581 ARREAERLIDELK------LALKEERKDQQAIERTRQGIRKLSNKVGEQDTPARATQGVD 634
Query: 783 VKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
++IK +G +V+++ +KG V+K+ + EI VQ G +K + ++I
Sbjct: 635 PQEIK------------LGQMVYMTKLRQKGQVLKLPNASGEIFVQAGVIKLNVPLSEI 681
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 132/285 (46%), Gaps = 24/285 (8%)
Query: 97 LDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREVR-------RASPLRPNEALAVVALL 149
LD A+E G L + L V+ A RE+R + L P+E L + L
Sbjct: 42 LDLVRGALEETGEGKSILRIN--PLFSVRGA-REIRPYLERCLKGGTLTPDELLHIRDTL 98
Query: 150 QFSETLQLSLRAAIKEDADLYIRFMPLTQMIM-QLFVNRSLIKSIMQVVDEDGSIKDSAS 208
+ + ++ SL+ E +P + IM Q+ + + + + I + + EDG + D AS
Sbjct: 99 KAARIIKQSLQEGKTE--------VPHLKGIMEQVILPKGIEEEITRCITEDGQVADQAS 150
Query: 209 PALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKG 265
PAL R V L+ ++ + +D +IRN + + + ++ R + + + SF G
Sbjct: 151 PALADLRRGVSRLQTRIRETLDGIIRNPAYQKILQDPIITQRSERYVVPVKQEYRQSFPG 210
Query: 266 LLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLN 324
++ S+SG IEP++ V L +EL++ + + +LL L+ +++ + + I
Sbjct: 211 IVHDQSASGATLYIEPMAVVNLGNELREVVLKEQREVQRILLLLSSRVEGEAEAIADAHE 270
Query: 325 GIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEP-VTSKV 368
+ ++D + A+A S +P + Q++ P +T KV
Sbjct: 271 ALARVDFILAKARLSEEMNAGAPVLTEKQEISLVQARHPLLTGKV 315
>gi|289766107|ref|ZP_06525485.1| DNA mismatch repair protein mutS [Fusobacterium sp. D11]
gi|289717662|gb|EFD81674.1| DNA mismatch repair protein mutS [Fusobacterium sp. D11]
Length = 778
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 143/418 (34%), Positives = 226/418 (54%), Gaps = 41/418 (9%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S ++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNREILSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ AR+ + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESIISKAREYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ E L L + + I+E ++ I +S ++ + +
Sbjct: 532 EMRERFARLQEEARLDRERAKQETLIIEKQKNE-------------IIKSAYEEAEKMMN 578
Query: 724 PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVV 783
++A +LV K ++ ++ KN ++L++ ++ VE VV
Sbjct: 579 EMRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VV 626
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K IK K VGD V V S + ++K+ SKE +VQ G +K + F +I
Sbjct: 627 KKIKTKVNFK------VGDRVFVKSINQFANILKINTSKESAMVQAGILKLEVPFDEI 678
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 10/175 (5%)
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
++ L +MI + R + I + ++ + IKD AS L+ R + L + + +
Sbjct: 112 KYKQLREMIGNIPNLRVIEDVINKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEE 171
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAV 284
L + + F E ++ GR+ D FKGL+ SSSG IEPLS V
Sbjct: 172 LFEEPSLSNAFQERIITERDGRMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIV 228
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
LN+++++ + +LL + E ++ + D+I + ++ LD++NA++ Y+
Sbjct: 229 SLNNKMRELETKEKEEIRKILLRIAELLRNNKDDILTIGEKVMYLDILNAKSIYA 283
>gi|163846758|ref|YP_001634802.1| MutS2 family protein [Chloroflexus aurantiacus J-10-fl]
gi|163668047|gb|ABY34413.1| MutS2 family protein [Chloroflexus aurantiacus J-10-fl]
Length = 823
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 190/694 (27%), Positives = 312/694 (44%), Gaps = 120/694 (17%)
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
RF L + L V SL ++I + + +DG + DSASP L + R +V++ +L + +
Sbjct: 118 RFPLLIDLANTLPVIPSLSEAIDRAIGDDGQVLDSASPTLARLRHEVRVAFNRLQERLQS 177
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLN 287
+I + E ++ +GR I A + +GL+ S SG IEP++ V LN
Sbjct: 178 MIHSSALAGALQEPIITVRNGRYVIPVKASHRREVRGLVHDQSGSGATLYIEPMAIVELN 237
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ ++ +++ + + +L L++++ + I +N + LD+ A A Y+++ T+P
Sbjct: 238 NRWRELQSAEAEEVQRILSTLSDQVGAAANLITSTVNTLATLDLAFALARYAIATRSTAP 297
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
I D + E + L +A HPLL
Sbjct: 298 EIV---DWR----------PDDPPSPEPPLRLTRARHPLL-------------------- 324
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
P+E V PID+++ + +L+ITGPNTGG
Sbjct: 325 -----------------------PAETVV---------PIDLWLGGEFSLLLITGPNTGG 352
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT GL +MA++G+ I + + +++P F +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 353 KTVALKTTGLLALMAQAGMQIPADQPSRLPVFQYIFADIGDEQSIEQSLSTFSSHMANII 412
Query: 528 NIISQSTS-------------------QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
++ T+ +LVL DE+GAGT+P+EG AL +++ E G
Sbjct: 413 RVLQTLTAAQQMPSESDAYALFDDRRPAALVLFDELGAGTDPVEGAALARAIIGRLLELG 472
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+L IATTH+ ELK Y+ +NA +EFD L PTY++ G+PGRS+A+ IA RLGL
Sbjct: 473 -VLGIATTHYAELKAFAYTTPGVQNASVEFDIETLAPTYRLSIGIPGRSNALAIAARLGL 531
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK 688
+++ AR A++ +++ ++R + + A L + R R +
Sbjct: 532 DPTLIEQARSFIDRKEAQVEDLLAGIQRERDAAAAALQRAEE-------LRLDAERYRDR 584
Query: 689 ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL 748
+ + + + A A + + + QQL + R++ R Q A + L
Sbjct: 585 LAAEQQAFAAERAAALEAARAEIEAELREVRQQLRRLREEFRTVNISR--QWLEEAEKRL 642
Query: 749 HCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP-NVGDLVHVS 807
T Q V N Q Q E P VGD V V+
Sbjct: 643 ATTAEQSQQAVARLNVQ---------------------TQPAPPPPAEKPLQVGDQVQVT 681
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
S G G ++ ++ + VQVG + + F D+
Sbjct: 682 SIGLNGEIVAIDEEDQTATVQVGGFRMTVSFNDL 715
>gi|313896601|ref|ZP_07830150.1| recombination and DNA strand exchange inhibitor protein
[Selenomonas sp. oral taxon 137 str. F0430]
gi|312974786|gb|EFR40252.1| recombination and DNA strand exchange inhibitor protein
[Selenomonas sp. oral taxon 137 str. F0430]
Length = 761
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 185/678 (27%), Positives = 317/678 (46%), Gaps = 116/678 (17%)
Query: 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
DADL + L + +++ + L K + +DE G+++D ASP L++ ++ + ++
Sbjct: 83 DADLSLPL--LKEKGVRIEILGMLEKHLQNTIDEHGNLRDDASPELRRVTREMLSAQNRV 140
Query: 226 YQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPL 281
+ + ++ + + F E V+ R I + + F G++ S+SG +EPL
Sbjct: 141 KERLSTILHDAAYQKCFQEAIVTVRAERYVIPVKQEYRAQFPGVIHDRSASGATLFVEPL 200
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ V LN+ ++Q + + +L L++++ D + + + +LD++ ARA S +
Sbjct: 201 ATVELNNTVRQMELAREQEIRRILQQLSQEIARAADIVSENCTILAELDLIFARAGLSRN 260
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
+P R + L +A HPLL
Sbjct: 261 MEAYAPTF----------------------NRAGYVRLQRARHPLL-------------- 284
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
P + V PIDI + R VL+IT
Sbjct: 285 -----------------------------PKDRVV---------PIDIELGRDFSVLLIT 306
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ +KT+G+ +MA+SG + ++ A++P + S++ADIGDEQS+ QSLSTFS
Sbjct: 307 GPNTGGKTVSMKTLGILALMAQSGCFLPTASGAELPVYGSIYADIGDEQSIEQSLSTFSA 366
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H K I I+ ++ S LVLLDE+GAGT+P EG AL S++E + + IATTH+ L
Sbjct: 367 HTKNIVRILQKAKSNDLVLLDEVGAGTDPDEGAALARSIIEHLLQR-RISVIATTHYAAL 425
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
KT Y NA +EFD L+PTY++L G PG S+A +I+ RLGL +V A++
Sbjct: 426 KTYAYGRQGVMNASVEFDTSTLRPTYRLLIGTPGASNAFSISRRLGLADAIVARAQRYID 485
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
V+ E+E+ K +E R + LR R + + Q +
Sbjct: 486 EDHVRFETVVNELEQEK-----RAYETR----------QTELRIRAQKISAMEEQLRTER 530
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLT 761
K A R L+HK+ ++ +AR + ++L+ Q V + + +
Sbjct: 531 DKFIQA---HRKLLHKAREEANGIVREARRSAEETIKKLK----QQFDDHGVKERRKAIQ 583
Query: 762 SNFQQTTVDKV--EHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVE 819
++ T + HP+ K +++ E+ GD+VH++ ++GTV+ V+
Sbjct: 584 EARERLTGAYMPQRHPSAT--------KVGQKIRAGEI-EPGDIVHITRLAQEGTVLAVQ 634
Query: 820 PSKEEIVVQVGNMKWIMK 837
+E+ VQ+G ++ ++K
Sbjct: 635 --GKELTVQIGALRTVVK 650
>gi|366166669|ref|ZP_09466424.1| MutS2 family protein [Acetivibrio cellulolyticus CD2]
Length = 793
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 145/398 (36%), Positives = 213/398 (53%), Gaps = 28/398 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID +I + LV+TGPNTGGKT+ LKTVGL +M ++GL I ++E ++ F VFA
Sbjct: 318 VPIDFWIGDEFDTLVVTGPNTGGKTVTLKTVGLFTLMTQAGLQIPANEGTEISVFGKVFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+K I NI+ S SLVL DE+GAGT+P EG AL M++LE
Sbjct: 378 DIGDEQSIEQSLSTFSSHMKNIVNILENVDSSSLVLFDELGAGTDPTEGAALAMAILEHL 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
E G + +ATTH+ +LK + ENAC EFD LKPTYK+L GVPGRS+A I+
Sbjct: 438 KERGCTI-VATTHYSQLKVYAVTTPHVENACCEFDVETLKPTYKLLIGVPGRSNAFAISN 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +V+ A+ + + ++++ +E+ Q +A L L +N +
Sbjct: 497 RLGLIDSIVERAKGYLTSEEIKFEDMLMSIEKNLNQSESEKRQA-QVLKLEAEKIRNEIE 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
++K E RK + +A AR ++ + + S+ R + Q +
Sbjct: 556 EQKKRFED------RKENIVKEAREEARRVLLDAKHEAENILSEMRRI------QREKES 603
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ-SPRVKRTELPNVGDL 803
SQS K ++ + N + + P +++VK K P GD
Sbjct: 604 SQS---QKEAEDMRLKIKNKIDNIEEALSKPIIPRNTLVKPPKNLKP----------GDS 650
Query: 804 VHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V + + +KGTV+ + E +VQ G MK + T++
Sbjct: 651 VLIINLNQKGTVVALPDKNGEAIVQAGIMKINLHITNL 688
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 149/346 (43%), Gaps = 47/346 (13%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHG 110
+++R+LE++K+ + + +SLG E L ++ ++ L ET+ + + + G
Sbjct: 4 KTIRILEFNKIIDRLVTLTASSLGAELAQQLLPEVD--FEKIKINLKETSDGVNFISRRG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQ-LSLRAAIKEDADL 169
S L GV+ ++ +IR S L P E + V LL+ L+ + I+ D
Sbjct: 62 SPPL--GGVND--IRDSIRRAEIGSILNPGELIRVSGLLRAVRNLKNYASGDNIRTGEDN 117
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ ++I L ++ + I + + I D+ASPAL R Q++ + + +
Sbjct: 118 VV-----GELINCLEASKRVEDKINMCIVSEEEISDNASPALGNIRRQIRHAQNSIKDKL 172
Query: 230 DMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAVP 285
+ L+R+ + E + ++ G R + + S GL+ SS+SG +EP++ V
Sbjct: 173 NDLVRSSKYQKYMQESIVTLRGDRYVVPVKQEYRSEIPGLVHDSSASGATLFVEPMAVVE 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQ----LDVVNARATYSLS 341
N+ +++ + E +L +++ D+ EI L ++ LD + A+A SL
Sbjct: 233 ANNTIRELKIKEQTEIERIL----QELSCDVSEISMGLKTNVELLAKLDFIFAKAKLSLD 288
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
+ P + RE + K HPLL
Sbjct: 289 YNCVCPKL----------------------NREGRTVIKKGRHPLL 312
>gi|222524571|ref|YP_002569042.1| MutS2 family protein [Chloroflexus sp. Y-400-fl]
gi|222448450|gb|ACM52716.1| MutS2 family protein [Chloroflexus sp. Y-400-fl]
Length = 819
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 190/694 (27%), Positives = 312/694 (44%), Gaps = 120/694 (17%)
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
RF L + L V SL ++I + + +DG + DSASP L + R +V++ +L + +
Sbjct: 114 RFPLLIDLANTLPVIPSLSEAIDRAIGDDGQVLDSASPTLARLRHEVRVAFNRLQERLQS 173
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLN 287
+I + E ++ +GR I A + +GL+ S SG IEP++ V LN
Sbjct: 174 MIHSSALAGALQEPIITVRNGRYVIPVKASHRREVRGLVHDQSGSGATLYIEPMAIVELN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ ++ +++ + + +L L++++ + I +N + LD+ A A Y+++ T+P
Sbjct: 234 NRWRELQSAEAEEVQRILSTLSDQVGAAANLITSTVNTLATLDLAFALARYAIATRSTAP 293
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
I D + E + L +A HPLL
Sbjct: 294 EIV---DWR----------PDDPPSPEPPLRLTRARHPLL-------------------- 320
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
P+E V PID+++ + +L+ITGPNTGG
Sbjct: 321 -----------------------PAETVV---------PIDLWLGGEFSLLLITGPNTGG 348
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKT GL +MA++G+ I + + +++P F +FADIGDEQS+ QSLSTFS H+ I
Sbjct: 349 KTVALKTTGLLALMAQAGMQIPADQPSRLPVFQYIFADIGDEQSIEQSLSTFSSHMANII 408
Query: 528 NIISQSTS-------------------QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
++ T+ +LVL DE+GAGT+P+EG AL +++ E G
Sbjct: 409 RVLQTLTAAQQMPSESDAYALFDDRRPAALVLFDELGAGTDPVEGAALARAIIGRLLELG 468
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+L IATTH+ ELK Y+ +NA +EFD L PTY++ G+PGRS+A+ IA RLGL
Sbjct: 469 -VLGIATTHYAELKAFAYTTPGVQNASVEFDIETLAPTYRLSIGIPGRSNALAIAARLGL 527
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK 688
+++ AR A++ +++ ++R + + A L + R R +
Sbjct: 528 DPTLIEQARSFIDRKEAQVEDLLAGIQRERDAAAAALQRAEE-------LRLDAERYRDR 580
Query: 689 ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL 748
+ + + + A A + + + QQL + R++ R Q A + L
Sbjct: 581 LAAEQQAFAAERAAALEAARAEIEAELREVRQQLRRLREEFRTVNISR--QWLEEAEKRL 638
Query: 749 HCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP-NVGDLVHVS 807
T Q V N Q Q E P VGD V V+
Sbjct: 639 ATTAEQSQQAVARLNVQ---------------------TQPAPPPPAEKPLQVGDQVQVT 677
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
S G G ++ ++ + VQVG + + F D+
Sbjct: 678 SIGLNGEIVAIDEEDQTATVQVGGFRMTVSFNDL 711
>gi|269837731|ref|YP_003319959.1| MutS2 family protein [Sphaerobacter thermophilus DSM 20745]
gi|269786994|gb|ACZ39137.1| MutS2 family protein [Sphaerobacter thermophilus DSM 20745]
Length = 800
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 153/500 (30%), Positives = 250/500 (50%), Gaps = 71/500 (14%)
Query: 163 IKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLE 222
I + +LY + I L L + + V G I D+AS L + R +V++
Sbjct: 109 IPDANELYPNLSEFVEAIADLA---GLEADLGRTVGPRGEILDTASERLAEIRREVRIAH 165
Query: 223 RKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLL-LSSSSGIGSVI 278
R+L ++ ++ + + V+ GR I AD+ + G++ +S+SG +
Sbjct: 166 RRLLDRLNRMLTDAAYAGAIQDAIVTMREGRYVIPVRADRRAQIPGVVHATSASGQTLFV 225
Query: 279 EPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATY 338
EP++ V LN+ ++ + + E +L A ++++ D++++ + + +D+ A+A
Sbjct: 226 EPMAVVELNNRWRELQMAEEHEIEAILRARSDQIAAAADDLDQTVEAVAAIDLALAKARL 285
Query: 339 SLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQA 398
+ S P + E I L +A HPLL
Sbjct: 286 AFSMRAVEPILV-----------EASGPGAPGGHPRHRIDLRQARHPLL----------- 323
Query: 399 WKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVL 458
+ DT + PID+ I R+L
Sbjct: 324 -------------------------DPDTVV----------------PIDVRIGETYRIL 342
Query: 459 VITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLST 518
V+TGPNTGGKT+ LKTVGL +MA++GL I +++ + + F +V+ADIGDEQS+ QSLST
Sbjct: 343 VVTGPNTGGKTVALKTVGLLTLMAQTGLFIPAADGSALSVFSAVYADIGDEQSIEQSLST 402
Query: 519 FSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578
FS H+ +I ++ + + SLVLLDEIGAGT+P EG+AL +++ A E G ++ + TTH+
Sbjct: 403 FSAHVTKIIAMLRSADADSLVLLDEIGAGTDPQEGSALARAIISALLERG-VIAMVTTHY 461
Query: 579 GELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
ELK Y + ENA +EFD L PTY++L GV G+S+A+ IAERLG+P V++ AR
Sbjct: 462 SELKAFAYVTEGTENASVEFDLRNLSPTYRLLLGVAGQSNALAIAERLGMPREVIEAARS 521
Query: 639 LYGAASAEINEVIIEMERFK 658
+ +E++ E+ R +
Sbjct: 522 YLSPGTERADELLTEIRRRR 541
>gi|154482859|ref|ZP_02025307.1| hypothetical protein EUBVEN_00555 [Eubacterium ventriosum ATCC
27560]
gi|149736287|gb|EDM52173.1| MutS2 family protein [Eubacterium ventriosum ATCC 27560]
Length = 800
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 149/470 (31%), Positives = 241/470 (51%), Gaps = 80/470 (17%)
Query: 196 VVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHGRLC 253
++ ED I D AS LK R Q+++ +++ + LI +++ + + ++ GR C
Sbjct: 149 IISED-EIADDASANLKNIRRQMKITNDRVHSQLSSLINSQSGHTYLQDALITMRDGRYC 207
Query: 254 IRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLNDELQQARASVTKAEEDVLLALTEK 311
+ + ++ S GS IEP + V LN++L++ + +L L+
Sbjct: 208 VPVKQEYRGNVNGIIHDQSSTGSTLFIEPAAVVELNNKLRELEGKEADEIQIILANLSMA 267
Query: 312 MQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSS 371
+ E++ + + +LD + A+A+ L ++MK S+ +
Sbjct: 268 CAEHIYELKTDMKILPKLDFIFAKAS-------------LAKEMKASMPE-------FND 307
Query: 372 EREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSP 431
+R+ I + K HPLL P
Sbjct: 308 QRQ--INIKKGRHPLL------------------------------------------DP 323
Query: 432 SEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS 491
++ VPIDI + + +L++TGPNTGGKT+ LKTVGL +M ++GLHI +
Sbjct: 324 KKV----------VPIDIHLGKDFNLLIVTGPNTGGKTVSLKTVGLLTLMGQAGLHIPAF 373
Query: 492 EYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPL 551
E +K+ F VFADIGDEQS+ QSLSTFS H+ NI++Q+ SLVL DE+GAGT+P+
Sbjct: 374 EGSKLAVFKEVFADIGDEQSIEQSLSTFSAHMVNTVNILNQADQDSLVLFDELGAGTDPV 433
Query: 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILW 611
EG ALG+S+L GS + +ATTH+ ELK S + +NA EFD L+PTY++L
Sbjct: 434 EGAALGISILTFLKNIGSRI-MATTHYSELKLFALSTEGVQNASCEFDVETLRPTYRLLI 492
Query: 612 GVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF 661
GVPG+S+A I+ +LGLP ++++A+ + + + +V+ E+ER + Q
Sbjct: 493 GVPGKSNAFAISSKLGLPDYIIEDAKSHIDSDNEQFEDVLSEIERQRIQI 542
>gi|315222241|ref|ZP_07864147.1| putative recombination and DNA strand exchange inhibitor protein
[Streptococcus anginosus F0211]
gi|315188574|gb|EFU22283.1| putative recombination and DNA strand exchange inhibitor protein
[Streptococcus anginosus F0211]
Length = 776
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 153/386 (39%), Positives = 218/386 (56%), Gaps = 40/386 (10%)
Query: 436 VSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS 490
+ L +AHP V D++ A +VITGPNTGGKTI LKT+GLA +MA+SGL IL+
Sbjct: 297 IRLLHVAHPLIENAVANDLYFAADLTEIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILA 356
Query: 491 SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 550
E ++V FD +FADIGDEQS+ QSLSTFS H+ I I+ QS SLVLLDE+GAGT+P
Sbjct: 357 DEGSRVGIFDQIFADIGDEQSIEQSLSTFSSHMTNIVAILEQSDENSLVLLDELGAGTDP 416
Query: 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKIL 610
EG AL M++LE + T+ATTH+ ELK + +NA MEFD L+PTY+ +
Sbjct: 417 QEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIETEGVQNASMEFDTDSLRPTYRFM 475
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
GVPGRS+A IA RLGL VV++A++L S ++N VI ER + Q L E+R
Sbjct: 476 QGVPGRSNAFEIARRLGLSDRVVKDAQELTDTDS-DVNRVI---ERLEEQTL----ESRK 527
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
L R + + L+ R + + K +++ A A+ ++ + L S + +
Sbjct: 528 RLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIIDVA---LTESDTILK 584
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
+L K + L+P H K+Q K P T S K +KQ+
Sbjct: 585 NLHDKSS--LKP------HEIIEAKSQL------------KKLAPETVDLSQNKVLKQAK 624
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVI 816
+ ++ P VGD + V S+G++GT++
Sbjct: 625 KARK---PKVGDDILVISYGQRGTLV 647
>gi|148240433|ref|YP_001225820.1| mismatch repair ATPase [Synechococcus sp. WH 7803]
gi|147848972|emb|CAK24523.1| Mismatch repair ATPase (MutS family) [Synechococcus sp. WH 7803]
Length = 794
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/249 (48%), Positives = 163/249 (65%), Gaps = 5/249 (2%)
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
ITGPNTGGKT+ LK++GLA +MA++GL + + +PW V ADIGDEQSL QSLSTF
Sbjct: 339 ITGPNTGGKTVTLKSIGLAALMARAGLWVPCTGSPTLPWCAQVLADIGDEQSLQQSLSTF 398
Query: 520 SGHLKQIGNI---ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 576
SGH+K+IG I I + +LVLLDE+GAGT+P EGTAL +LL A+ + LT+ATT
Sbjct: 399 SGHVKRIGRILEAIRSGPAPALVLLDEVGAGTDPSEGTALATALLRTLADR-ARLTVATT 457
Query: 577 HHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 636
H GELK LKYS+ FENA + FD L PTY +LWG+PGRS+A+ IA RLGL V+ +A
Sbjct: 458 HFGELKALKYSDARFENASVAFDSDTLSPTYHLLWGIPGRSNALAIATRLGLETSVIDDA 517
Query: 637 RQLYG-AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCAS 695
R L A E+N VI +E + + +A L + LH+ LL+ K +H A
Sbjct: 518 RALLSPAGDGEVNTVIRGLEEQRMRQQAAAEDAAALLARTELLHEELLQRWEKQKQHSAE 577
Query: 696 QRFRKVQKI 704
++ + Q++
Sbjct: 578 RQEQGRQRL 586
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 135/310 (43%), Gaps = 30/310 (9%)
Query: 50 VYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKH 109
+ E+L +LEW +LC ++SFA T GR + L D A++ +Q
Sbjct: 4 LQETLELLEWPRLCEHLASFASTVQGRR------------HCKGDPLPDSLPASLTLQAQ 51
Query: 110 GSCSLDLTGVDLSLVKS-AIREVRRASP--LRPNEALAVVA--LLQFSETLQLS--LRAA 162
+L++ +D L + + VR +P LR ++ LL+ ++TL + LR
Sbjct: 52 ---TLEMASLDGVLDGGLSFQGVRDLAPTLLRCSKGGTASGEELLEVADTLAAARRLRRQ 108
Query: 163 IKEDADLYIRFMPL-TQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQML 221
I E P+ T ++ + L + + ++E G + D ASP L R Q Q L
Sbjct: 109 IDEP-----ELRPVCTTLLEDVATFPDLEQRLKFAIEEGGRVADRASPGLDGLRRQWQEL 163
Query: 222 ERKLYQLMDMLIRNENNESLFLEVSSIHGR--LCIRTGADQLSFKGLLLSSSSGIGSVIE 279
K + +IR ++ HGR L ++ GA + SS+SG +E
Sbjct: 164 RAKRRDRLQDVIRRWAAHLQDTVIAERHGRPVLAVKAGAGGQCPGMVHDSSASGSTVFVE 223
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
P + L ++L + + E+ VL L+ + ++ ++ ++ +++LD+ AR Y
Sbjct: 224 PKVVIDLGNKLANVDGRIREEEQRVLAELSAAVAEQVEGLQHLMQVLLKLDLALARGRYG 283
Query: 340 LSFGGTSPNI 349
G P +
Sbjct: 284 QWLGAVPPRL 293
>gi|260495808|ref|ZP_05815929.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_33]
gi|260196655|gb|EEW94181.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_33]
Length = 778
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 143/418 (34%), Positives = 226/418 (54%), Gaps = 41/418 (9%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S ++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNREILSLEKARHPFIDKEKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ AR+ + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESIISKAREYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ E L L + + I+E ++ I +S ++ + +
Sbjct: 532 EMRERFARLQEEARLDRERAKQETLIIEKQKNE-------------IIKSAYEEAEKMMN 578
Query: 724 PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVV 783
++A +LV K ++ ++ KN ++L++ ++ VE VV
Sbjct: 579 EMRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VV 626
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K IK K VGD V V S + ++K+ SKE +VQ G +K + F +I
Sbjct: 627 KKIKTKINFK------VGDRVFVKSINQFANILKINTSKESAMVQAGILKLEVPFDEI 678
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 11/162 (6%)
Query: 186 NRSLIKSIM-QVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE 244
N LI+ ++ + ++ + IKD AS L+ R + L + + + L + + F E
Sbjct: 125 NLRLIEDVINKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFEEPSLSNAFQE 184
Query: 245 --VSSIHGRLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASV 297
++ GR+ D FKGL+ SSSG IEPLS V LN+++++
Sbjct: 185 RIITERDGRMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKE 241
Query: 298 TKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
+ +LL + E ++ + D+I + ++ LD++NA++ Y+
Sbjct: 242 KEEIRKILLRIAELLRNNKDDILTIGEKVMYLDILNAKSIYA 283
>gi|417885123|ref|ZP_12529282.1| recombination and DNA strand exchange inhibitor protein
[Lactobacillus oris F0423]
gi|341596419|gb|EGS39022.1| recombination and DNA strand exchange inhibitor protein
[Lactobacillus oris F0423]
Length = 790
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 204/720 (28%), Positives = 340/720 (47%), Gaps = 132/720 (18%)
Query: 124 VKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQL 183
+K ++ ++ + L E V +LQ S LS++ ++ + I+ L Q + +L
Sbjct: 71 IKPQMKRLKIGANLNGTELAQVTKVLQAS----LSVQNFFEQMREKKIKLRVLEQTVDRL 126
Query: 184 FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFL 243
S+ +++ VD DG I D AS L R + E ++ Q M + ++ + L
Sbjct: 127 VTIPSVTTRLVRSVDPDGRINDEASAKLHGIRQLISKTENEIRQQMAQYTQGKSAKYLSE 186
Query: 244 EVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKA 300
+ ++ + R I A + F G++ S+SG IEP + + N+ L+QA+ +
Sbjct: 187 PIVTVRNDRFVIPVLARYRNKFGGVVHDQSASGQTLYIEPGAVMEDNNRLRQAQ---IEE 243
Query: 301 EEDVLLALTE------KMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQD 354
+++VL L E + D+ E++L LD +NA+A Y+ +
Sbjct: 244 KQEVLRVLAELSALISPYRHDILNNEQILG---HLDFINAKAIYA-------------HE 287
Query: 355 MKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKL 414
+K SL P+ S + + L KA+HPL+ +D AN
Sbjct: 288 LKASL---PLLSA------DNQVNLRKAWHPLI-----------ARDQAVAN-------- 319
Query: 415 YGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKT 474
DI + + ++ITGPNTGGKTI LKT
Sbjct: 320 ---------------------------------DIKLGGDYQAVIITGPNTGGKTITLKT 346
Query: 475 VGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQST 534
+G+ +M ++GL I + E + + FD+VFADIGDEQSL Q+LSTFSGH+ + I+ Q T
Sbjct: 347 LGIIQLMGQAGLFIPAQEGSTIGVFDNVFADIGDEQSLEQNLSTFSGHMDNVKTILDQLT 406
Query: 535 SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENA 594
+ SLVLLDE+GAGT+P EG AL M++L+ + GSL+ I TTH+ ELK Y NA
Sbjct: 407 ANSLVLLDELGAGTDPKEGAALAMAILDEIGQRGSLVMI-TTHYPELKVYGYDRAKTINA 465
Query: 595 CMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEM 654
MEFD+ L+PTY++L G+PGRS+ + IA+RLG+ ++ A+ L S ++N +I ++
Sbjct: 466 SMEFDQATLQPTYRLLLGIPGRSNGLEIAKRLGIGPAIISEAQSLVSDDSQDLNAMIGDL 525
Query: 655 ERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSL 714
+ Q E + ++ + L + L+ QR + +++ AR
Sbjct: 526 VEQRKQAREESERLAKLVAQNQADQEEL----NQKLDRFNEQRDQLLER-------ARL- 573
Query: 715 VHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEH 774
++ Q+ + +A ++H +QL + ++ Q L + Q ++
Sbjct: 574 --QANHQVAQAKRKADRIIH-HLRQLEIQQGAGVKENQLMDAQGALNALHQ-------DN 623
Query: 775 PATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
P +SV+K K+ + + GD V V S+G+ G E++ + GN KW
Sbjct: 624 PRLQHNSVLKRAKEKHDLHK------GDAVLVKSYGQHG----------ELLSRRGNHKW 667
>gi|221632685|ref|YP_002521906.1| MutS2 family protein [Thermomicrobium roseum DSM 5159]
gi|254766609|sp|B9KYW4.1|MUTS2_THERP RecName: Full=MutS2 protein
gi|221157216|gb|ACM06343.1| MutS2 family protein [Thermomicrobium roseum DSM 5159]
Length = 792
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 182/615 (29%), Positives = 292/615 (47%), Gaps = 91/615 (14%)
Query: 52 ESLRVLEWDKL-------C-HSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA 103
E LR+LE+DK+ C +SV+S + A Q+ + + +++ RLL+E
Sbjct: 4 ELLRLLEFDKIRELLAARCQYSVASERAREIAPTADRDQVAYLLRVTREAARLLNE---- 59
Query: 104 IEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI 163
S + G ++S ++ +R + L P + V+ L+ + SLR
Sbjct: 60 -------RPSFTIGG--FRDIRSVVQAAQRGNILAPADVRTVLDTLEAAA----SLRRQF 106
Query: 164 KEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
D R+ L + ++ + L + + + G + D+ASP L R ++
Sbjct: 107 MADERWSERYPALAEFVLAMVDLPGLRADLARSIGPRGEVLDTASPELAAIRRSLKEAHE 166
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPL 281
+L + + L+ V+ GR I AD+ + SG G +EP
Sbjct: 167 RLLERLRRLLAERQEAIQDAYVTIRDGRYVIPVRADRRQAVPGITHDVSGSGQTLFVEPF 226
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ LN+ ++ +A+ T+ E +L LT+++ DE+ +++ LD+ A+A +
Sbjct: 227 EVLELNNRWRELQAAETREIERILRVLTQRIADAADELLQIVEAGAALDLALAKARLAYD 286
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
P + EP V + L A HPLL ++T
Sbjct: 287 LDAVEPELL-----------EPSGPTVPEGHPFLRVRLRAARHPLL----DRRT------ 325
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
A P+ ++ + + R+LVIT
Sbjct: 326 ----------------------------------------AVPIDVE--LGERFRILVIT 343
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ LKTVGL +MA++GL I ++ + + F ++F DIGDEQS+ Q+LSTFS
Sbjct: 344 GPNTGGKTVALKTVGLLALMAQAGLFIPAAPGSGLSVFPAIFVDIGDEQSIEQNLSTFSS 403
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+++I + Q+ + SLVLLDEI AGT+P EG AL ++LE E G+ L I TTH+ EL
Sbjct: 404 HMRRIVATLQQADASSLVLLDEIAAGTDPQEGAALARAILERLLEIGA-LGIVTTHYPEL 462
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K ENA +EFD V L PTY++L G+PGRS A+ +A RLGLP V+ AR+L G
Sbjct: 463 KVFATGTPGLENASVEFDPVTLSPTYRLLVGLPGRSHALEVARRLGLPEDVIARARELLG 522
Query: 642 AASAEINEVIIEMER 656
+ + +++ +I EM+R
Sbjct: 523 SGAPQLDRLIAEMQR 537
>gi|410667688|ref|YP_006920059.1| DNA mismatch repair protein MutS [Thermacetogenium phaeum DSM
12270]
gi|409105435|gb|AFV11560.1| DNA mismatch repair protein MutS [Thermacetogenium phaeum DSM
12270]
Length = 793
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 217/400 (54%), Gaps = 33/400 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+D+ + R L+ITGPNTGGKT+ LKTVGL V+MA++GLHI + E +P +VFA
Sbjct: 314 VPLDLHLGRDFDCLIITGPNTGGKTVALKTVGLLVVMAQAGLHIPAGERTVLPVLQNVFA 373
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFSGH+K I I+ Q SLVLLDE+GAGT+P +G ALGM++L+
Sbjct: 374 DIGDEQSIEQSLSTFSGHMKNIVRILDQVGEGSLVLLDELGAGTDPEQGAALGMAILDRL 433
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+L+ IATTH ELK ++ ENA +EFD L+PTY++ GVPG S+A IA
Sbjct: 434 INKGALI-IATTHFSELKIFAHTRQRAENASVEFDSRTLQPTYRLSIGVPGESNAFEIAA 492
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL VV+ AR E++++I +H+ E F S L R
Sbjct: 493 RLGLDSEVVERARSFLRPEQRELSDLI-----------KHLKED-QFAASSARAEAELER 540
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA-SQARSLVHKRAQQLRPS 743
+E + R+ +++ + S+ H+ A++L +A +A L+ +++R
Sbjct: 541 AE---VEKLKEKLRREEERLRNKQQEILSMAHEEARELVRTARREAEQLIRFLREKMRQE 597
Query: 744 ASQSL--HCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVG 801
++ V + L+ ++ AT S+ DI + + G
Sbjct: 598 DARIALEEAQAVRQKLGDLSGRIEERAA------ATEESAFAGDIPDTLK--------PG 643
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
D+V + F ++G VI E++VQVG +K + ++
Sbjct: 644 DVVAIPRFHQEGYVISPPGPDGEVLVQVGALKLHLPIKEL 683
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 11/217 (5%)
Query: 137 LRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQV 196
L P + L+ LQ E L+ +L +A +E L R + + R+L + I
Sbjct: 84 LEPQDLLSCRDTLQAGERLKKALLSAGRELPRLQARARRIQEC-------RTLQEKINLC 136
Query: 197 VDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD-MLIRNENNESLFLEVSSIHG-RLCI 254
+ DG I DSASP L + R Q++ L+ ++ L+D +L + E N L + ++ G R +
Sbjct: 137 IQPDGEISDSASPELARLRQQIRTLQVRIRGLLDEILSKPEWNRYLQEPIYTVRGDRYVV 196
Query: 255 RTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKM 312
+ S F GL+ S SG +EPL V +EL R + + E+ +L LT+ +
Sbjct: 197 PVKQEHRSQFPGLVHDLSGSGATVFMEPLPLVGPMNELMAKRTAAHREEQRILEELTKMV 256
Query: 313 QVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
D I++ L + +LD + A+ S G P
Sbjct: 257 AAFHDAIQENLRILGELDFILAKGHLSSKLKGNPPRF 293
>gi|335032478|ref|ZP_08525868.1| MutS2 family protein [Streptococcus anginosus SK52 = DSM 20563]
gi|333766614|gb|EGL43904.1| MutS2 family protein [Streptococcus anginosus SK52 = DSM 20563]
Length = 776
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 151/386 (39%), Positives = 216/386 (55%), Gaps = 40/386 (10%)
Query: 436 VSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS 490
+ L +AHP V D++ A +VITGPNTGGKTI LKT+GLA +MA+SGL IL+
Sbjct: 297 IRLLHVAHPLIENAVANDLYFAADLTEIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILA 356
Query: 491 SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 550
E ++V FD +FADIGDEQS+ QSLSTFS H+ I I+ QS SLVLLDE+GAGT+P
Sbjct: 357 DEGSRVGIFDQIFADIGDEQSIEQSLSTFSSHMTNIVAILEQSDENSLVLLDELGAGTDP 416
Query: 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKIL 610
EG AL M++LE + T+ATTH+ ELK + +NA MEFD L+PTY+ +
Sbjct: 417 QEGAALAMAILEDL-RLRQVKTMATTHYPELKVYGIETEGVQNASMEFDTDSLRPTYRFM 475
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
GVPGRS+A IA RLGL VV++A++L S ++N VI ER + Q LE +R
Sbjct: 476 QGVPGRSNAFEIARRLGLSVRVVKDAQELTDTDS-DVNRVI---ERLEEQTLE----SRK 527
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
L R + + L+ R L+ ++ R+ + + A + AQ++ A
Sbjct: 528 RLDNIREVEQENLKFNRA-LKKLYNEFNREKETELNKARL-------EAQEIIDVALTES 579
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
+ K +LH K ++ + Q + P T S K +KQ+
Sbjct: 580 DTILK-----------NLHAKSSLKPHEIIEAKGQLKKL----APETVDLSKNKVLKQAK 624
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVI 816
+ ++ P VGD + V S+G++GT++
Sbjct: 625 KARK---PKVGDDILVISYGQRGTLV 647
Score = 40.0 bits (92), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 6/171 (3%)
Query: 190 IKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIH 249
++ +Q ++E G ++ AS L + R ++Q E ++ ++ +++ + + V+S +
Sbjct: 130 LQGALQAINEGGFVESFASDNLARIRRKIQENEVQVRDILQDILKTKGDMLADQVVASRN 189
Query: 250 GRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
GR + T ++S G++ SSSG IEP + V LN+E+ ARA +L
Sbjct: 190 GRNVLPVKNTFRHRIS--GVVHDISSSGNTVYIEPRAVVNLNEEITNARADERYEILRIL 247
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
L+E+++ EI I LD V A+ + G P + QD++
Sbjct: 248 QELSERIRPHAAEIANNAWIIGHLDFVRAKVRFMQERGAVVPKLSDRQDIR 298
>gi|357050429|ref|ZP_09111627.1| MutS2 protein [Enterococcus saccharolyticus 30_1]
gi|355381082|gb|EHG28209.1| MutS2 protein [Enterococcus saccharolyticus 30_1]
Length = 787
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 143/397 (36%), Positives = 222/397 (55%), Gaps = 30/397 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + +VITGPNTGGKTI LKT+GL +M +SGL IL E +++ F +FA
Sbjct: 317 VPNDIAIGEDYQAVVITGPNTGGKTITLKTLGLLQIMGQSGLPILVDEESQMGIFQEIFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTTIVDVLKKVDHTSLVLFDELGAGTDPQEGAALAIAILDEL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 G-ARSAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A+Q+ S ++NE+I ++E + E RH++ + L K L +
Sbjct: 496 RLGLDTQIIEQAKQIMDGESQDLNEMIADLENRRKMTETEYLEMRHYVEEAERLQKELKQ 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
E ++ A AR K A Q+ A + + + ++ S+
Sbjct: 556 AYNFFFEEREAE-----------LAKAR----KKANQIVEEAKEESEKIISDIRNMQLSS 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
QS H K ++ + + + + + EH + V++ K + +K VGD V
Sbjct: 601 GQS-HV----KEHELIAARTKLSDLHQEEH--LQKNKVLQKAKAAKTLK------VGDEV 647
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V+S+G++GT+IK + + + VQ+G +K + +D+
Sbjct: 648 LVTSYGQRGTLIK-KMGQSQWQVQLGILKMTLPESDL 683
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 133/301 (44%), Gaps = 16/301 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L VL +D++ V + T+ G+E L QL Q S L ET A+++Q+
Sbjct: 6 LDVLAFDQVKQLVGQYLVTAQGKE-ELAQLAPSADAQQIST-WLAETEDALKVQRLRG-- 61
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLYI 171
G+ + +++ +++R + L + L Q L + L+ ++ +D I
Sbjct: 62 ----GIPVPKIENIRPQMKR---IEIGADLNGLELAQVGRVLVTANELKRFFEDLSDSEI 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
F L + QL +L + + + VDEDG + D ASP L+ R ++ ER + + +D
Sbjct: 115 EFERLYEWEKQLVTLPTLSRRLKEAVDEDGRLTDEASPELRVIRQNIRRSERTIRETLDS 174
Query: 232 LIRNENNESLFLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
L+R N + L + ++ R I + G ++ SSSG IEP V N+
Sbjct: 175 LVRGGNAKYLSDTIVTMRNERYVIPVKQEYRGVFGGVVHDQSSSGQTLFIEPKQVVDQNN 234
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
L+Q + + E +L L+ ++ EI I +D +NA+A + P
Sbjct: 235 RLRQHQIAERTEIERILAELSAELAPYQREILHNAYVIGMMDFMNAKARFGKELQAIVPA 294
Query: 349 I 349
I
Sbjct: 295 I 295
>gi|256545517|ref|ZP_05472877.1| DNA mismatch repair protein MutS [Anaerococcus vaginalis ATCC
51170]
gi|256398728|gb|EEU12345.1| DNA mismatch repair protein MutS [Anaerococcus vaginalis ATCC
51170]
Length = 781
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 217/790 (27%), Positives = 368/790 (46%), Gaps = 130/790 (16%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
++L VLE+ K+ + ++AR+ L ++ ++++ N ++ LD+T A E+ +
Sbjct: 4 KTLEVLEFGKILEKLKTYARSELVKKE-ISKIKPKNNI-KEIKDELDKTKAMEEVIVE-N 60
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
++D+ G L +K I VR+ L P E L V+ LL+ S L + + + YI
Sbjct: 61 GNIDIFG--LFDLKEIIEYVRKKGILEPFELLKVLDLLRVSNYL----KEYGENIENPYI 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ + ++ + F+ + +SI + ED I D+AS L+ R ++ E ++ +
Sbjct: 115 KDL-FDRISVNDFIKDEIERSI---ISED-EIADNASANLRSIRKKIGKKEAEIKNKLSF 169
Query: 232 LIRNEN-NESLFLEVSSIH-GRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLN 287
I + +ESL +V SI GR + ++ S G++ S SG IEP + V LN
Sbjct: 170 YISSPKFDESLQDKVVSIRDGRYVLPVKTNKKSVLNGIIHDRSQSGNTLFIEPNAIVELN 229
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
++L S + EE +++++ LD + + + G Q + N + + F
Sbjct: 230 NDL-----SNLQIEE------SDEIRRILDRLSRFVEGFDQEILENQKLIQRIDF----- 273
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
L +K L HE K++ + I L A HPLL
Sbjct: 274 ---LQAKVKYFLAHEYTMPKLTDKK---IINLKSARHPLL-------------------- 307
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGG 467
GN VPID+ I + L+ITGPNTGG
Sbjct: 308 --------KGNV-------------------------VPIDVKIGDGYKTLIITGPNTGG 334
Query: 468 KTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527
KT+ LKTVGL +MA++G +I E + V FD +F DIGD QS+ SLSTFS L I
Sbjct: 335 KTVSLKTVGLVSLMAQAGFYIPCDEDSVVNVFDDIFLDIGDTQSIEMSLSTFSASLTNIV 394
Query: 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587
I + SLVLLDE+G+GT+P EG AL +S+LE F ++ +++T ATTH+ ELK
Sbjct: 395 KITENVSENSLVLLDEVGSGTDPTEGAALAISILE-FLKNKNVMTFATTHYSELKYYALE 453
Query: 588 NDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEI 647
+ NA +EFD L PTYK++ G PG+S+A I++RLGL ++ NA+ + +
Sbjct: 454 KEGVMNASVEFDVESLSPTYKLIIGTPGKSNAFEISKRLGLDKKILANAKSILSDDNKNF 513
Query: 648 NEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKIL---EHCASQRFRKVQKI 704
N ++ ++++ K + E + K + + R +L E+ Q ++K
Sbjct: 514 NTILEQLDQNKKEMEIKNQEIEDY-------KKKIKKARNDLLALSENIKKQEKEIIEKA 566
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
D A +K++Q + A + S++ + + + ++ + + + +
Sbjct: 567 EDKANKILEEANKASQDMLKIAKK----------------SKNGNTSDIDRSLNDIRNKY 610
Query: 765 QQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEE 824
+ + +D+ E S K +P+ + VGD+V + +K VI+ K
Sbjct: 611 KDSKIDRQEEVFKEKIS-----KNAPQNLK-----VGDVVLIEGLNEKAQVIENPDEKGN 660
Query: 825 IVVQVGNMKW 834
I VQ+G +K
Sbjct: 661 IKVQMGILKM 670
>gi|332798676|ref|YP_004460175.1| MutS2 protein [Tepidanaerobacter acetatoxydans Re1]
gi|332696411|gb|AEE90868.1| MutS2 protein [Tepidanaerobacter acetatoxydans Re1]
Length = 787
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 141/378 (37%), Positives = 211/378 (55%), Gaps = 48/378 (12%)
Query: 443 HP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKV 496
HP VP+D+++ + +L+ITGPNTGGKT+ LKTVGL ++MA+SGLH+ + E +V
Sbjct: 307 HPLLKGEVVPLDVYLGDEFNILIITGPNTGGKTVALKTVGLFILMAQSGLHLPAQEGTEV 366
Query: 497 PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556
F+ VFADIGDEQS+ QSLSTFS H+K I I+ +T SL++LDE+GAGT+P EG AL
Sbjct: 367 SIFEDVFADIGDEQSIEQSLSTFSSHMKNIKEILDLATKDSLIILDELGAGTDPTEGAAL 426
Query: 557 GMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGR 616
M++L E GS + +ATTH+ ELKT +S + ENA MEFD L PTY++ G+PG+
Sbjct: 427 AMAILNYLYEKGSRV-LATTHYSELKTFAFSKEGVENASMEFDIQTLSPTYRLTIGIPGK 485
Query: 617 SSAINIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMER------------FKTQFL 662
S+A IA+RLGL VV + L S ++ +++ IE+++ KT++L
Sbjct: 486 SNAFEIAKRLGLKQEVVDLGKSLMAEESLKLEDLLTHIELQKNKAEEEREELRALKTEYL 545
Query: 663 EHV---HEARHFL------------MLSRNLHKNLLRTRRKILEHCA-SQRFRKVQKISD 706
+ + E + L M +R L N+ R +I+E ++ ++ +
Sbjct: 546 KKIDRLEEEQQKLRIQQEKIVEKAKMKARLLLDNIEREAAQIIESLKDAETENQIHIRNK 605
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ--------H 758
A ARS + K+ ++L S + +L+ A++ + L G NQ
Sbjct: 606 AVEQARSWLRKTDEKLQDSKN---ALIINAAKKYKKPLKPGLKVKIAGLNQEGYILSLDE 662
Query: 759 VLTSNFQQTTVDKVEHPA 776
L S Q + KV PA
Sbjct: 663 ALKSAQVQVGIMKVNVPA 680
Score = 66.6 bits (161), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 148/300 (49%), Gaps = 18/300 (6%)
Query: 56 VLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLD-ETNAAIEMQKHGSCSL 114
+LE+DK+ + +A +SL +E S + +D +++L ET+ + + G +
Sbjct: 8 ILEYDKIKSILMEYAVSSLAKEKIARMRPS---SDEDLVKMLQRETSEGLALLNSG-IKI 63
Query: 115 DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFM 174
L G+ +++++ + S L P E L + + ++ + ++ + K+ AD I
Sbjct: 64 SLRGI--KDIRNSLNLAKLGSVLSPGELLDIASTMRAARLIKSAWNE--KKPADSVI--- 116
Query: 175 PLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIR 234
+ +++ L + +SL + I + + D I D+ASP L R Q + L + + ++ +I
Sbjct: 117 -INEIVNGLHIFQSLEEKIEKAIVSDEEIADNASPKLSSIRRQKKNLAQSIRNKLNEIIS 175
Query: 235 NENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDEL 290
+ + + V+ R + + + S +G++ S+SG IEP++ + +N+EL
Sbjct: 176 SPYYQKALQDPIVTVRQDRYVVPVKQEFRGSIQGVIHDQSASGATLYIEPMAVMQMNNEL 235
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIF 350
+Q K E +L ++K+Q + D I L G+ LD + A+A YSL GT P IF
Sbjct: 236 RQLEIEEKKEIERILWDFSKKVQENYDFIHDTLYGLAHLDFIMAKAGYSLDIKGTEP-IF 294
>gi|260584040|ref|ZP_05851788.1| DNA mismatch repair protein MutS [Granulicatella elegans ATCC
700633]
gi|260158666|gb|EEW93734.1| DNA mismatch repair protein MutS [Granulicatella elegans ATCC
700633]
Length = 785
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 231/400 (57%), Gaps = 38/400 (9%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI + ++ + +VITGPNTGGKTI LKT+G+ +MA+ GL+I + ++V F +FADIG
Sbjct: 320 DIILGQEYQSIVITGPNTGGKTILLKTIGIIQLMAQMGLYIPALPDSRVGVFTQIFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ Q+LSTFS H+ I +I+++ +SLVL+DEIG+GT+P EG +L +++L+
Sbjct: 380 DEQSIEQNLSTFSSHMSNIVSILNKIDEKSLVLMDEIGSGTDPQEGASLAIAILDYIGTK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S + IATTH+ ELK Y+ NA MEFD L+PTY+ L GVPGRS+A +I+ RLG
Sbjct: 440 QSYV-IATTHYPELKVYGYNRVGTINASMEFDSDTLQPTYRFLLGVPGRSNAFDISARLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
LP +V++ ARQ S E+NE+I ++ER R + +++ + L+
Sbjct: 499 LPKVVIEQARQFISVESQELNEMISDLER-----------KRRIVDQEKSVIQQQLKESS 547
Query: 688 KILE--HCASQRFR--KVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPS 743
++LE ++ F+ K + I A A LV +S + + L RA QL+
Sbjct: 548 QLLEALKLETENFKENKARLIEQAKEKANELVAQSQE------DAEKILSDIRAMQLKSK 601
Query: 744 ASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDL 803
+ V K ++ ++T + ++H V+K K R K + G
Sbjct: 602 ET-------VVKEHELIE---KKTALTDLKH-----EQVLKKNKVLKREKAKKSLRPGQS 646
Query: 804 VHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIVT 843
V V+SFG++GT+++ + S++E VVQ+G +K + D+++
Sbjct: 647 VEVTSFGQRGTLVE-KISEQEWVVQMGIIKMKLPVEDLIS 685
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 131/299 (43%), Gaps = 16/299 (5%)
Query: 56 VLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQ--KHGSCS 113
+LE+ K+ H+V FA T + T+ I + ++ET A+ + K G
Sbjct: 8 ILEFHKIRHAVKEFANTQKAK--TMILQLPIETNAKKIRHKIEETRDAVTLLRLKQGIPI 65
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
L + +S I+ + + L E ++ +LQ + + + +KE+ I
Sbjct: 66 PKLEDISVS-----IKRLEVEAGLNGRELSEILKVLQTTNQVA-NFFEKVKEEE---ITL 116
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
L Q++ +L + K + + EDG + D AS LK R + E+++ +D +
Sbjct: 117 DRLPQLVEKLEYLPEISKQLQLSIREDGYVLDDASIPLKGIRQGISRTEQEIKGQLDTYV 176
Query: 234 RNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLLSSSSGIGSVI--EPLSAVPLNDEL 290
+ + L + +I + R + A+ S G ++ S G + EP + V LN++L
Sbjct: 177 TGKYAKYLTDSLITIRNDRYVVPVKAEYKSTFGGIVHDQSATGQTLFMEPQAIVNLNNKL 236
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+ + K E +LL L+EK+ + + + +LD+ NA+A Y+ P I
Sbjct: 237 RDYQLQEKKEVERILLELSEKLMPHTPSLTQNHYVLSRLDIANAKALYAKQIKANEPII 295
>gi|195977479|ref|YP_002122723.1| recombination inhibitory protein MutS2 [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|238689796|sp|B4U143.1|MUTS2_STREM RecName: Full=MutS2 protein
gi|195974184|gb|ACG61710.1| recombination inhibitory protein MutS2 [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 778
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 150/400 (37%), Positives = 232/400 (58%), Gaps = 43/400 (10%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
+ +PV D+ A V+VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + ++V F+
Sbjct: 307 IQNPVANDLHFANDLAVIVITGPNTGGKTIMLKTLGLAQVMAQSGLPILADKGSRVAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++ADIGDEQS+ QSLSTFS H+ I I+ Q+ S SL+L DE+GAGT+P EG +L M++
Sbjct: 367 GIYADIGDEQSIEQSLSTFSSHMTHIVEILKQADSDSLILFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + ++ T+ATTH+ ELK + ENA M FD V LKPTY+ + GVPGRS+A
Sbjct: 427 LEQLRLT-NIKTMATTHYPELKAYGIETAYVENASMAFDNVSLKPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF---LEHVHEARHFLMLSRN 677
+IA RLGL +V+ A Q A + ++N +I ++E+ + LEH+ E N
Sbjct: 486 DIARRLGLAEHIVKEA-QAMTATNHDVNRIIEQLEQQTLESRKRLEHIKEVEQ-----DN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
L N R +K+ + + ++++K AA AR +V + L S S S +H++A
Sbjct: 540 LKFN--RAVKKLYNEFSHAKDKELEK---AALEAREIVDMA---LAESES-ILSQLHEKA 590
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL 797
+ L+P ++ + +H L V + + + V+K + K+
Sbjct: 591 E-LKPH--------EIIEAKHRLKQ--------LVPEQSLSQNKVLK------KAKKWRA 627
Query: 798 PNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
P VGD + V+++G++GT++ + + QVG +K +K
Sbjct: 628 PRVGDDIIVTAYGQRGTLL-AQLKDKRWEAQVGLIKLTLK 666
>gi|257870172|ref|ZP_05649825.1| DNA mismatch repair protein MutS [Enterococcus gallinarum EG2]
gi|257804336|gb|EEV33158.1| DNA mismatch repair protein MutS [Enterococcus gallinarum EG2]
Length = 787
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 143/397 (36%), Positives = 222/397 (55%), Gaps = 30/397 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + +VITGPNTGGKTI LKT+GL +M +SGL IL E +++ F +FA
Sbjct: 317 VPNDIAIGEDYQAVVITGPNTGGKTITLKTLGLLQIMGQSGLPILVDEESQMGIFQEIFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTTIVDVLKKVDHTSLVLFDELGAGTDPQEGAALAIAILDEL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 G-ARSAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A+Q+ S ++NE+I ++E + E RH++ + L K L +
Sbjct: 496 RLGLDTQIIEQAKQIMDGESQDLNEMIADLENRRKMTETEYLEMRHYVEEAERLQKELKQ 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
E ++ A AR K A Q+ A + + + ++ S+
Sbjct: 556 AYNFFFEEREAE-----------LAKAR----KKANQIVEEAKEESEKIISDIRNMQLSS 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
QS H K ++ + + + + + EH + V++ K + +K VGD V
Sbjct: 601 GQS-HV----KEHELIAARTKLSDLHQEEH--LQKNKVLQKAKAAKTLK------VGDEV 647
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V+S+G++GT+IK + + + VQ+G +K + +D+
Sbjct: 648 LVTSYGQRGTLIK-KMGQSQWQVQLGILKMTLPESDL 683
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 133/301 (44%), Gaps = 16/301 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L VL +D++ V + T+ G+E L QL Q S L ET A+++Q+
Sbjct: 6 LDVLAFDQVKQLVGQYLVTAQGKE-ELAQLAPSADAQQIST-WLAETEDALKVQRLRG-- 61
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLYI 171
G+ + +++ +++R + L + L Q L + L+ ++ +D I
Sbjct: 62 ----GIPVPKIENIRPQMKR---IEIGADLNGLELAQVGRVLVTANELKRFFEDLSDSEI 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
F L + QL +L + + + VDEDG + D ASP L+ R ++ ER + + +D
Sbjct: 115 EFERLYEWEKQLVTLPTLSRRLKEAVDEDGRLTDEASPELRVIRQNIRRSERTIRETLDS 174
Query: 232 LIRNENNESLFLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
L+R N + L + ++ R I + G ++ SSSG IEP V N+
Sbjct: 175 LVRGGNAKYLSDTIVTMRNERYVIPVKQEYRGVFGGVVHDQSSSGQTLFIEPKQVVDQNN 234
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
L+Q + + E +L L+ ++ EI I +D +NA+A + P
Sbjct: 235 RLRQHQIAERTEIERILAELSAELAPYQREILHNAYVIGMMDFMNAKARFGKELQAIVPA 294
Query: 349 I 349
I
Sbjct: 295 I 295
>gi|157150407|ref|YP_001449579.1| DNA mismatch binding protein MutS2 [Streptococcus gordonii str.
Challis substr. CH1]
gi|229486382|sp|A8AUW9.1|MUTS2_STRGC RecName: Full=MutS2 protein
gi|157075201|gb|ABV09884.1| DNA mismatch binding protein MutS2 [Streptococcus gordonii str.
Challis substr. CH1]
Length = 777
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 148/388 (38%), Positives = 218/388 (56%), Gaps = 40/388 (10%)
Query: 436 VSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS 490
+ L++ HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL IL+
Sbjct: 297 IQLLQVRHPLIQNAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLPILA 356
Query: 491 SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 550
+ ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAGT+P
Sbjct: 357 DKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAGTDP 416
Query: 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKIL 610
EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY+ +
Sbjct: 417 QEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTYRFM 475
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
GVPGRS+A IA RLGL ++V +A++ S ++N++I ER + Q L E+R
Sbjct: 476 QGVPGRSNAFEIARRLGLSEVIVSHAQEQTNTDS-DVNQII---ERLEEQTL----ESRK 527
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
L R + + L+ R + + K +++ A A+ +V L S S+
Sbjct: 528 RLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSESE-- 580
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
S ++LH K ++ + Q + P T S K +KQ+
Sbjct: 581 ------------SILKNLHAKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLKQA- 623
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVIKV 818
K+ P VGD + V+S+G++GT++K+
Sbjct: 624 --KKNRAPKVGDDILVTSYGQRGTLVKL 649
>gi|225869204|ref|YP_002745152.1| DNA mismatch repair protein [Streptococcus equi subsp.
zooepidemicus]
gi|259511161|sp|C0MEM8.1|MUTS2_STRS7 RecName: Full=MutS2 protein
gi|225702480|emb|CAX00391.1| putative DNA mismatch repair protein [Streptococcus equi subsp.
zooepidemicus]
Length = 778
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 150/401 (37%), Positives = 230/401 (57%), Gaps = 45/401 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
+ +PV D+ A V+VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + ++V F+
Sbjct: 307 IQNPVANDLHFANDLAVIVITGPNTGGKTIMLKTLGLAQVMAQSGLPILADKGSRVAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++ADIGDEQS+ QSLSTFS H+ I I++Q+ S SL+L DE+GAGT+P EG +L M++
Sbjct: 367 GIYADIGDEQSIEQSLSTFSSHMTHIVEILNQADSDSLILFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + ++ T+ATTH+ ELK + ENA M FD V LKPTY+ + GVPGRS+A
Sbjct: 427 LEQLRLT-NIKTMATTHYPELKAYGIETAYVENASMAFDNVSLKPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF---LEHVHEARHFLMLSRN 677
+IA RLGL +V+ A Q A ++N +I ++E+ + LEH+ E N
Sbjct: 486 DIARRLGLAEHIVKEA-QAMTATDHDVNRIIEQLEQQTLESRKRLEHIKEVEQ-----DN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
L N R +K+ + + ++++K AA AR +V + + SQ +H++A
Sbjct: 540 LKFN--RAVKKLYNEFSHAKDKELEK---AALEAREIVDIALAESDSILSQ----LHEKA 590
Query: 738 QQLRP-SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE 796
+ L+P ++ H K + L+ N K +KQ+ K+
Sbjct: 591 E-LKPHEIIEAKHRLKQLAPEQSLSQN--------------------KVLKQA---KKWR 626
Query: 797 LPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
P VGD + V+++G++GT++ + + QVG +K +K
Sbjct: 627 APRVGDDIIVTAYGQRGTLL-AQLKDKRWEAQVGLIKLTLK 666
>gi|408356333|ref|YP_006844864.1| MutS2 protein [Amphibacillus xylanus NBRC 15112]
gi|407727104|dbj|BAM47102.1| MutS2 protein [Amphibacillus xylanus NBRC 15112]
Length = 783
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 216/397 (54%), Gaps = 32/397 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI + +VITGPNTGGKT+ LK VGLA +MA+SGL + + + ++ FD VFA
Sbjct: 316 VANDILLGEDYHAIVITGPNTGGKTVTLKLVGLATLMAQSGLQVPALDGCRLAVFDEVFA 375
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ QI I+ Q +SLVL DE+GAGT+P EG AL M++L+ +
Sbjct: 376 DIGDEQSIEQSLSTFSSHMTQIVKILKQVNHKSLVLFDELGAGTDPQEGAALAMAILD-Y 434
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ IATTH+ ELK Y+ D NA +EFD L+PTY++L GVPGRS+A I+
Sbjct: 435 VVNKKARVIATTHYPELKAYGYNRDGVINASVEFDVKSLQPTYRLLIGVPGRSNAFEISR 494
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ +QL G + + +I ++ + Q + +A L + L L
Sbjct: 495 RLGLDDQIIEAGKQLIGTDTKSVEHMIESLDTARRQAEQDYDDAERTLQEAEALRDQL-- 552
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
RK LE +R R QK ++AQ+ A Q + + + +Q++ A
Sbjct: 553 --RKELEKFDQERERLYQK-----------AEETAQKAIEKARQEATEIVESIRQMQHGA 599
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
S H + + L T + E+ A +S+ KQ+ VGD V
Sbjct: 600 SLKEHEWIEARKR--LDQAAPNLTDKRQENKALHTSA-----KQTF--------EVGDEV 644
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+V + + GT+I + + ++I VQ+G MK +K D+
Sbjct: 645 NVLTLNQNGTIIAIN-ADDDIQVQIGVMKLKVKKRDL 680
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 141/298 (47%), Gaps = 13/298 (4%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSCS 113
++L++DK+ + A TSLG+E QL + + L L ET+ A ++ + +G
Sbjct: 7 QILDFDKVIEQLVEHAATSLGKERA-RQLKPETELTKVEL-LQSETDQAGQVIRLYG--- 61
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
D+ ++ +K +++ V L E L + + + L+ + +E+ + I
Sbjct: 62 -DVPFGGITDIKPSLKRVEIGGVLNAQECLQIAETIYGGKQLRNFVENIDEEEVAIPI-- 118
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
+ +++ Q+ + L + I +D++G + D AS L+Q R +++ E ++ +D L
Sbjct: 119 --IRELVGQIELLNHLEREIKSCIDDNGHVLDGASSKLRQIRMKIRTNESRIRDRLDSLT 176
Query: 234 RNENNESLFLEVSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQ 291
++++ V+ + R + + + +F G++ SSSG IEP V +N++L
Sbjct: 177 KSKSKMLSDAIVTIRNDRYVLPVKQEYRGAFGGIVHDQSSSGQTLFIEPQVVVEINNQLS 236
Query: 292 QARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+ARA E +L L++++ + + + QLD + ARA S P +
Sbjct: 237 EARAQEKAEIERILRQLSQEIGTHHPYLTHNVKILTQLDFIFARAKLGRSMKAAMPKM 294
>gi|323353466|ref|ZP_08087999.1| DNA mismatch repair protein MutS [Streptococcus sanguinis VMC66]
gi|322121412|gb|EFX93175.1| DNA mismatch repair protein MutS [Streptococcus sanguinis VMC66]
Length = 777
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 217/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D++ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLYFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLSEVIVGHAQEQTDTDS-DVNRII---ERLEEQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S ++LH K ++ + Q + P T S K +K
Sbjct: 580 E--------------SILKNLHDKSSLKPHEIIEAKSQLKKL----APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 622 QA---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 91/182 (50%), Gaps = 9/182 (4%)
Query: 182 QLFVNRSLIKSI---MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENN 238
+LF N ++ + +Q V++ G I+ AS L + R ++Q E ++ +++ +++N+
Sbjct: 119 RLFENLAVFPKLQGSLQAVNDGGFIESFASENLSRIRRKIQENENQVREILQEILKNKGE 178
Query: 239 ESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQAR 294
V+S +GR + T +++S G++ S+SG IEP + V LN+E+ +R
Sbjct: 179 MLADQVVASRNGRNVLPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSR 236
Query: 295 ASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQD 354
A + +L L++ + EI I LD+V A+ + G P++ QD
Sbjct: 237 ADERYEIQRILQELSDLFRPHAAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQD 296
Query: 355 MK 356
++
Sbjct: 297 IQ 298
>gi|227529705|ref|ZP_03959754.1| MutS family DNA mismatch repair protein [Lactobacillus vaginalis
ATCC 49540]
gi|227350371|gb|EEJ40662.1| MutS family DNA mismatch repair protein [Lactobacillus vaginalis
ATCC 49540]
Length = 784
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 154/420 (36%), Positives = 228/420 (54%), Gaps = 38/420 (9%)
Query: 429 LSPSEMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMM 481
LSP + QV + HP V DI I + + +VITGPNTGGKTI LKT GL MM
Sbjct: 288 LSP-DNQVIIRQARHPLIDPQKVVANDIKIGDEYQSIVITGPNTGGKTITLKTFGLIQMM 346
Query: 482 AKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLL 541
++GL I + E + + FD+++ADIGDEQSL Q+LSTFSGH++ + +I+ + TS+SLVLL
Sbjct: 347 GQAGLFIPAQEGSTIAVFDNIYADIGDEQSLEQNLSTFSGHMENVKSILERITSRSLVLL 406
Query: 542 DEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 601
DE+GAGT+P EG AL MS+L+ A GS + I TTH+ ELK Y NA MEFD+
Sbjct: 407 DELGAGTDPKEGAALAMSILDYIASKGSTVVI-TTHYPELKVYGYDRPGTINASMEFDQE 465
Query: 602 KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF 661
LKPTY +L G+PGRS+ I IA+RLG+ V+ ++ L S ++N++I E+ +
Sbjct: 466 TLKPTYHLLLGIPGRSNGIEIAQRLGINQTVITESKSLVSEDSQDLNQMIGELVEQRKAA 525
Query: 662 LEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQ 721
E L+ +R +L L+ QR + K + A S+ K A
Sbjct: 526 REEKERLEKLLVANREKQADLTNK----LDRFNEQRDSLLAKARNEANHEVSMAKKKAD- 580
Query: 722 LCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSS 781
R + H R QL S + ++ ++ Q L + + E P ++
Sbjct: 581 --------RIIHHLR--QLEISQAGNVKENELIDAQGALNALHR-------EDPRLKRNT 623
Query: 782 VVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V++ R K +VGD V V S+G++G ++ + SK + VQ+G ++ + D+
Sbjct: 624 VLR------RAKEKHDLHVGDAVLVKSYGQQGELLS-KRSKHKWEVQIGILRMEIDENDL 676
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 139/310 (44%), Gaps = 43/310 (13%)
Query: 57 LEWDKLCHSVSSFARTSLGRE--ATLT--------QLWSINQTYQDSLRLLDETNAAIEM 106
+E+D++ + + ++ G+ ATLT Q W LDET
Sbjct: 1 MEFDQVKRELGRYLVSAAGKRELATLTPSADHDQIQYW------------LDETT----- 43
Query: 107 QKHGSCSLDLTG-VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR----- 160
G+ L LTG + + +K+ +++R LR N L L Q ++ LQ S+
Sbjct: 44 --DGADILRLTGGIPIPKLKNIQPQLKR---LRINANLNGTELAQITKVLQTSMSVKNFF 98
Query: 161 AAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQM 220
A KE + +R + + + QL ++ K ++Q +D DG + D AS L R +
Sbjct: 99 AEFKEQQKVELRV--INESVQQLITIPTITKRLIQSIDPDGRVTDEASTKLHGIRQLISK 156
Query: 221 LERKLYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSV 277
E +++Q M+ + +N + L + ++ + R + A + F G++ S+SG
Sbjct: 157 TEAEIHQRMERFTQGKNAKYLSDAIVTVRNDRYVVPVLARYRNKFGGVVHDQSASGQTLY 216
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
IEP + V N+ L+QA+ +A +VL L+ + EI + LD +NA+A
Sbjct: 217 IEPAAVVEYNNRLRQAQIEEKQAILEVLAELSALISPYRSEIAANAKILGHLDFINAKAR 276
Query: 338 YSLSFGGTSP 347
++ + P
Sbjct: 277 FARDHKDSLP 286
>gi|237743809|ref|ZP_04574290.1| DNA mismatch repair protein mutS [Fusobacterium sp. 7_1]
gi|229432840|gb|EEO43052.1| DNA mismatch repair protein mutS [Fusobacterium sp. 7_1]
Length = 778
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 143/418 (34%), Positives = 225/418 (53%), Gaps = 41/418 (9%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S ++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNREILSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ AR + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESIISKARAYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ E L L + + I+E ++ I +S ++ + +
Sbjct: 532 EMRERFARLQEEARLDRERAKQETLIIEKQKNE-------------IIKSAYEEAEKMMN 578
Query: 724 PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVV 783
++A +LV K ++ ++ KN ++L++ ++ VE VV
Sbjct: 579 EMRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VV 626
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K IK K VGD V V S + ++K+ SKE +VQ G +K + F +I
Sbjct: 627 KKIKTKVNFK------VGDRVFVKSINQFANILKINTSKESAMVQAGILKLEVPFDEI 678
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 10/154 (6%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L ++ + F E ++ G
Sbjct: 133 INKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFEEQSLSNAFQERIITERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
L + E ++ + D+I + ++ LD++NA++ Y+
Sbjct: 250 LRIAELLRNNKDDILIIGEKVMYLDILNAKSIYA 283
>gi|295425851|ref|ZP_06818531.1| DNA mismatch repair protein MutS [Lactobacillus amylolyticus DSM
11664]
gi|295064454|gb|EFG55382.1| DNA mismatch repair protein MutS [Lactobacillus amylolyticus DSM
11664]
Length = 785
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 202/681 (29%), Positives = 323/681 (47%), Gaps = 112/681 (16%)
Query: 165 EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
E+ D I + +++ +L V +L + + VD DG + D+AS AL + R ++ E +
Sbjct: 108 EEVDDEIDLSSVDEILTELDVPETLFHELKKSVDYDGEVLDTASTALARLRHDMRSNEEE 167
Query: 225 LYQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPL 281
+ M+ + +++ L + +I R I + + F G++ S+SG +EP
Sbjct: 168 IKAKMEGYTKGNSSKYLSEGIVTIRDDRYVIPVKQEYRGKFGGVVHDQSASGQTLFVEPE 227
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ + LN+ Q A + +L +L+ + ++D + + + + +LD + A+A
Sbjct: 228 AVLNLNNRQQNLVAQERQEIHRILKSLSNLARTEIDRLNAIASALTELDFLQAKAK---- 283
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
L + MK S +P SK + ++ L KA HPL+
Sbjct: 284 ---------LAKQMKAS---QPKLSK------DHSLNLLKARHPLI-------------- 311
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
P ++ VP DI + K ++IT
Sbjct: 312 ----------------------------DPEKV----------VPNDIRLGDKFDTMLIT 333
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKTI LKT GL +MA+SGL I + E + V F V+ADIGDEQS+ QSLSTFS
Sbjct: 334 GPNTGGKTITLKTAGLLQLMAQSGLFIPAEEGSTVGVFKQVYADIGDEQSIEQSLSTFSS 393
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+ I I+ + +LVL+DEIGAGT+P EG +L +S+L+ F + TTH+ EL
Sbjct: 394 HINDIVYIMKHVNADTLVLIDEIGAGTDPEEGASLAISILD-FLRKKDAKIMVTTHYPEL 452
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K Y+ + NA MEFD L PTY + G+PG S+A IA RLG+ VVQNA+ L
Sbjct: 453 KLYGYNRERTTNASMEFDLKTLSPTYHLQIGIPGHSNAFAIARRLGMREDVVQNAQGLMK 512
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRN-LHKNLLRTRRKILEHCASQRFRK 700
+ ++IN++I E ++E +RN L +L R+++ LE
Sbjct: 513 DSDSDINKMI-----------ERLNEQTKAATAARNRLQTSLDRSQK--LE--------- 550
Query: 701 VQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVL 760
+K+ +A V K QL + +A +V KR ++ Q + + K ++
Sbjct: 551 -EKLQEALDWYNQRVQK---QLDFAQERANEVVAKRRKKADQIIKQLENSRQHIKENEII 606
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
+ Q +++ E A + V++ K+ V NVGD V V S+G+ GT+ K +
Sbjct: 607 DAKGQLNKLEQQEANNLAHNKVLQHEKRRHHV------NVGDKVKVLSYGQTGTITK-KL 659
Query: 821 SKEEIVVQVGNMKWIMKFTDI 841
S E VQ+G +K + DI
Sbjct: 660 SAHEYEVQIGIIKTKVSDRDI 680
>gi|319939975|ref|ZP_08014330.1| MutS2 protein [Streptococcus anginosus 1_2_62CV]
gi|319810986|gb|EFW07305.1| MutS2 protein [Streptococcus anginosus 1_2_62CV]
Length = 776
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 148/386 (38%), Positives = 218/386 (56%), Gaps = 40/386 (10%)
Query: 436 VSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS 490
+ L +AHP V D++ A +VITGPNTGGKTI LKT+GLA +MA+SGL IL+
Sbjct: 297 IRLLHVAHPLIENAVANDLYFAADLTEIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILA 356
Query: 491 SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 550
E ++V FD +FADIGDEQS+ Q+LSTFS H+ I +I+ Q+ +LVLLDE+GAGT+P
Sbjct: 357 DEGSRVGIFDQIFADIGDEQSIEQNLSTFSSHMTNIVSILEQADENALVLLDELGAGTDP 416
Query: 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKIL 610
EG AL M++LE + T+ATTH+ ELK + +NA MEFD L+PTY+ +
Sbjct: 417 QEGAALAMAILEDLWLR-QVKTMATTHYPELKAYGIETEGVQNASMEFDTDSLRPTYRFM 475
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
GVPGRS+A IA RLGL VV++A++L S ++N VI ER + Q L E+R
Sbjct: 476 QGVPGRSNAFEIARRLGLSDRVVKDAQELTDTDS-DVNRVI---ERLEEQTL----ESRK 527
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
L R + + L+ R L+ ++ R+ + + A + AQ++ A
Sbjct: 528 RLDNIREVEQENLKFNRA-LKKLYNEFNREKETELNKARL-------EAQEIIDVALTES 579
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
++ K +LH K ++ + Q + P T S K +KQ+
Sbjct: 580 DMILK-----------NLHAKSSLKPHEIIEAKGQLKKL----APETVDLSKNKVLKQAK 624
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVI 816
+ ++ P VGD + V S+G++GT++
Sbjct: 625 KARK---PKVGDDILVISYGQRGTLV 647
>gi|403744515|ref|ZP_10953741.1| MutS2 family protein [Alicyclobacillus hesperidum URH17-3-68]
gi|403122049|gb|EJY56297.1| MutS2 family protein [Alicyclobacillus hesperidum URH17-3-68]
Length = 780
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 142/403 (35%), Positives = 214/403 (53%), Gaps = 42/403 (10%)
Query: 443 HP--VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
HP VPID+ + R+L+ITGPNTGGKT+ LKTVGL +MA SGL + + +++ +
Sbjct: 312 HPAGVPIDVELGADFRLLIITGPNTGGKTVTLKTVGLLTLMAMSGLFLPTRRESEIGFCR 371
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
VF DIGDEQS+ QSLSTFS H+K I ++ Q +SLVLLDE+GAGT+P EG+AL +++
Sbjct: 372 DVFVDIGDEQSIEQSLSTFSSHMKNIIQMLQQVDEKSLVLLDELGAGTDPAEGSALAIAI 431
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
L+ + G+ + +ATTH+ ELK + N NA MEFD L+PTY++L GVPGRS+A+
Sbjct: 432 LDRLTQVGARV-MATTHYAELKGYAFHNSHAMNASMEFDLASLRPTYRLLMGVPGRSNAL 490
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA+RLGLP ++ AR+ + E+I ++E EA R+
Sbjct: 491 AIAQRLGLPDDILAAAREHVAETDVHVEELIGKLEAAN-------REAERL----RDEAA 539
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
R +E ++ ++++D AR+ A + A Q + + +Q+
Sbjct: 540 RAWEDARAQMEQLDARETALDKELADVRERARN----EAASIVEKAQQEAERIIRELRQM 595
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP-- 798
R H + + + K +V + K SPR P
Sbjct: 596 R----------------HTTVKDHELVELRK------GLEGLVPERKASPRRSGKVSPKL 633
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+VG V V S G+KG V++V P + +VQ+G M+ + D+
Sbjct: 634 SVGQRVRVISLGQKGDVVEVAPDSKSALVQLGAMRMKVVVNDL 676
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 140/306 (45%), Gaps = 18/306 (5%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGRE-ATLTQLWSINQTYQDSLRLLDETNAAIEMQ 107
++ SL LE+D + V+ A +SLG++ A +S + +L +DE +
Sbjct: 4 MIIRSLEALEYDWVRQRVADEAMSSLGKQLAQTMSPFSFRAEAESALAKVDEAYRC--LL 61
Query: 108 KHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
+ GS GV + ++ A+ + L ++ LA+ + + + A E
Sbjct: 62 RAGSPPF--AGV--TDIRPALSRAKVGGVLGADQVLAIAQFIAGGRAFRQFIEHAATE-I 116
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
DL + L++++ + R + I QVV +DG + D AS L Q R + + E ++
Sbjct: 117 DLPV----LSELLAPMADLRRTEQEIRQVVSDDGQVLDHASDVLLQLRSERRRREGEVRT 172
Query: 228 LMDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSA 283
+D L+R ++ L E + ++ G C+ + + +G++ SSSG IEP +
Sbjct: 173 TLDRLLR--THQKLLQEPIVAMRGPYYCLPVRVEHKNQLRGIVRDVSSSGSTVFIEPRAV 230
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
+ + +++ + E +L ++ + +E+E + + Q D++ A+A Y+ G
Sbjct: 231 SEIGERIREIEVLEEREIERILQQISAVIATVSEELETNVALLEQADLIFAKAGYARRIG 290
Query: 344 GTSPNI 349
G P +
Sbjct: 291 GKRPQL 296
>gi|422933743|ref|ZP_16966518.1| DNA mismatch repair protein MutS, partial [Fusobacterium nucleatum
subsp. animalis ATCC 51191]
gi|339891359|gb|EGQ80350.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 797
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 143/418 (34%), Positives = 226/418 (54%), Gaps = 41/418 (9%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S ++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 313 SNREILSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 372
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE
Sbjct: 373 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDE 432
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 433 LGSGTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 491
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ AR+ + ++ E +IE + K+Q L+
Sbjct: 492 SPTYRLLVGIPGESNALTIAQRMGLPESIISKAREYISEDNKKV-EKMIENIKTKSQELD 550
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ E L L + + I+E ++ I +S ++ + +
Sbjct: 551 EMRERFARLQEEARLDRERAKQETLIIEKQKNE-------------IIKSAYEEAEKMMN 597
Query: 724 PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVV 783
++A +LV K ++ ++ KN ++L++ ++ VE VV
Sbjct: 598 EMRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VV 645
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K IK K VGD V V S + ++K+ SKE +VQ G +K + F +I
Sbjct: 646 KKIKTKINFK------VGDRVFVKSINQFANILKINTSKESAMVQAGILKLEVPFDEI 697
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 11/162 (6%)
Query: 186 NRSLIKSIM-QVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE 244
N LI+ ++ + ++ + IKD AS L+ R + L + + + L + + F E
Sbjct: 144 NLRLIEDVINKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFEEPSLSNAFQE 203
Query: 245 --VSSIHGRLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASV 297
++ GR+ D FKGL+ SSSG IEPLS V LN+++++
Sbjct: 204 RIITERDGRMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKE 260
Query: 298 TKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
+ +LL + E ++ + D+I + ++ LD++NA++ Y+
Sbjct: 261 KEEIRKILLRIAELLRNNKDDILTIGEKVMYLDILNAKSIYA 302
>gi|401682045|ref|ZP_10813940.1| MutS2 family protein [Streptococcus sp. AS14]
gi|400185351|gb|EJO19581.1| MutS2 family protein [Streptococcus sp. AS14]
Length = 777
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 151/390 (38%), Positives = 220/390 (56%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG+AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGSALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLSEVIVGHAQEQTDTDS-DVNRII---ERLEEQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDNIREVEQENLKFNRSLKKLYNEFNREKETELNKARLEAQEIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S ++LH K ++ + +T + K+ P T S K +K
Sbjct: 580 E--------------SILKNLHDKSSLKPHEIIEA---KTQLKKL-APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
QS K+ P VGD + V+S+G++GT++K
Sbjct: 622 QS---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 43.5 bits (101), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLC 253
+Q V++ G I+ AS +L + R ++Q E ++ +++ +++N+ V+S +GR
Sbjct: 134 LQAVNDGGFIESFASESLSRIRRKIQENENQVREILQEILKNKGEMLADQVVASRNGRNV 193
Query: 254 I---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ T +++S G++ S+SG IEP + V LN+E+ +RA + +L L+
Sbjct: 194 LPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSRADERYEIQRILQELS 251
Query: 310 EKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+ + EI I LD+V A+ + G P++ QD++
Sbjct: 252 DLFRPHAAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQDIQ 298
>gi|402310174|ref|ZP_10829142.1| MutS2 family protein [Eubacterium sp. AS15]
gi|400369416|gb|EJP22416.1| MutS2 family protein [Eubacterium sp. AS15]
Length = 785
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 143/407 (35%), Positives = 216/407 (53%), Gaps = 57/407 (14%)
Query: 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD 508
I I + LVITGPNTGGKT+ LKT+GL +M + GLHI + F+++FADIGD
Sbjct: 318 IEIGKSYTTLVITGPNTGGKTVTLKTLGLLCIMLQCGLHIPCDIGSSGYIFNNIFADIGD 377
Query: 509 EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
EQS++QSLSTFS H+ I I+++ SLVL DE+GAGT+P+EG L +S+L+ E
Sbjct: 378 EQSIAQSLSTFSAHMTNIVGIMNEVDENSLVLFDELGAGTDPVEGAGLAISILDTLKEK- 436
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+LT ATTH+ ELK + D NA +EFD L PTY+++ G+PG+S+A I+++LGL
Sbjct: 437 DILTAATTHYSELKNYALTVDKVTNASVEFDVNTLSPTYRLIIGIPGKSNAFEISQKLGL 496
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQF------LEHVHEARHFLMLS-RNLHKN 681
++Q AR S ++ +VI ++++ K ++ LE E F+ L N +
Sbjct: 497 SKDIIQRARDTIHTESIKVEDVITKLDKIKNEYEEKKQRLEKELEDAEFIRLKLENRERR 556
Query: 682 LLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLR 741
+ KILE ++ ARSLV + A ++K +L+
Sbjct: 557 AQQNSEKILEEAKNK--------------ARSLVEE--------AKNEADEINKVLNKLK 594
Query: 742 PSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKD---IKQSPRVKRTELP 798
S S+++ +DK + + KD K+ VK E P
Sbjct: 595 KS------------------SDYK--NIDKKMNEIKGRINTFKDKYAKKKEELVKSNEKP 634
Query: 799 ----NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
VGD+V+V+SF + V+ V+ K E+VVQ+G +K +K +I
Sbjct: 635 IENVGVGDIVYVNSFAQNAKVLSVDDKKNEVVVQLGAIKMTLKKENI 681
>gi|164687641|ref|ZP_02211669.1| hypothetical protein CLOBAR_01283 [Clostridium bartlettii DSM
16795]
gi|164603415|gb|EDQ96880.1| MutS2 family protein [Clostridium bartlettii DSM 16795]
Length = 792
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 145/399 (36%), Positives = 219/399 (54%), Gaps = 37/399 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +++ + LVITGPNTGGKT+ +KTVGL +M +SGLHI + + +D+VFA
Sbjct: 318 VPNTVYLGKDFDTLVITGPNTGGKTVTIKTVGLFALMTQSGLHIPADFGTSMCVYDNVFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ +I+++ TS SLV+ DE+GAGT+P+EG AL +++LE
Sbjct: 378 DIGDEQSIEQSLSTFSSHMTNTVSILNEVTSDSLVIFDELGAGTDPVEGAALAIAILEDV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+G+ IATTH+ ELK + + ENA +EFD L PTY++L GVPG+S+A I++
Sbjct: 438 NMAGA-KCIATTHYSELKNYALTKNGVENAAVEFDVDTLSPTYRLLIGVPGKSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
+LGL V+ A++ + E+ +V+ +E+ + + E EA L + + ++
Sbjct: 497 KLGLSEYVINRAKEFINTDNIELEDVLQNVEKNRLKAEEDRLEAEK---LKKEIE-DIKA 552
Query: 685 TRRKILEHCASQRFRKVQKI-SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQ---- 739
LE +QR + + K S+A +I R +S L + K+ QQ
Sbjct: 553 EYEGRLERVMAQREKIISKAKSEAFSITRQAKEQSENILKELRKLETEMASKQKQQKIEA 612
Query: 740 LRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPN 799
LR S S+ L + + V KV SS +KD+K
Sbjct: 613 LRKELSDSMGN---------LQPSVKSMIVPKV------SSKEIKDLKP----------- 646
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKF 838
GD V V + + GTV+ V+ K+E +VQ+G MK + F
Sbjct: 647 -GDDVKVVTLNQDGTVVSVDKKKKEALVQIGIMKMTLPF 684
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 115/248 (46%), Gaps = 15/248 (6%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
+SLRVLE++K+ + + A +SLG + + L N + LL+ + A + K G
Sbjct: 4 KSLRVLEFNKIIDKLKTKASSSLGLKH-IENLKPSNDFDEVKNTLLETSEAQAILIKRGL 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
S+D + ++ + + L P L + L+ + +L+ +L + +ED +
Sbjct: 63 VSMD----GIHDIEDKAKRAHVGATLDPGALLKIADCLRVARSLKRNLEGSEEEDFNY-- 116
Query: 172 RFMPLTQMIMQ-LFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
P+ Q + L+ R + I + + I D+AS LK R ++ + + ++
Sbjct: 117 ---PIIQALTNALYTFRDIEDRIYTSIVGESEISDNASTTLKTIRRRIVQKNQSIRSKLN 173
Query: 231 MLIRNENNESLFLE-VSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
+I + + + + S+ G R I A+ S ++ SSSG IEP+S V +
Sbjct: 174 SIISSTTYQKYLQDNIISMRGDRFVIPVKAEYRSVVSGIVHDQSSSGATLFIEPMSIVEM 233
Query: 287 NDELQQAR 294
N+EL++ +
Sbjct: 234 NNELRKLK 241
>gi|331083698|ref|ZP_08332809.1| hypothetical protein HMPREF0992_01733 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330403909|gb|EGG83461.1| hypothetical protein HMPREF0992_01733 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 792
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 215/821 (26%), Positives = 361/821 (43%), Gaps = 172/821 (20%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGRE--ATLTQLWSINQTYQDSLRLLDETNAAIEMQKH 109
++L+ LE+ K+ + +FA +S G++ +L L ++N+ + ++ + A + +
Sbjct: 4 KALKTLEYSKIIQMLENFATSSCGKDLCRSLVPLDNLNE-----IEIMQQETADALARIY 58
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR---AAIKED 166
SL GV ++ +++ + S L E L++ +LL+ + + R A K+D
Sbjct: 59 QKGSLSFGGV--KDIRGSLKRLEIGSTLGTGELLSLCSLLENTNRAKAYARRENAEEKQD 116
Query: 167 A--DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
+ ++ PLT + ++ I + + + I D AS LKQ R ++ K
Sbjct: 117 SLDGMFEILQPLTPLALE----------IRRCILSEEEIADDASAGLKQIRRSMKNTNDK 166
Query: 225 LYQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPL 281
++ + + L V ++ +GR CI A+ G++ SS+G +EP+
Sbjct: 167 IHSQLSSYVSGSARTYLQDAVVTMRNGRYCIPVKAEHKGQVPGMIHDQSSTGSTVFVEPM 226
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ V LN++L++ E +L L++ +L+ IE L + QLD + ARA + +
Sbjct: 227 AIVKLNNDLRELEVKEQAEIEIILSNLSQYAAENLEAIEDNLKVMTQLDFIFARALLAKA 286
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
T P + I L KA HPL+ +HK
Sbjct: 287 QNATEPRF----------------------NTKGIIDLKKARHPLI-DKHK--------- 314
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
VPID+ + +LV+T
Sbjct: 315 ------------------------------------------VVPIDVRLGEDFDLLVVT 332
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ LKT+GL +M +SGLHI + + +++ F V+ADIGDEQS+ QSLSTFS
Sbjct: 333 GPNTGGKTVSLKTIGLLTLMGQSGLHIPAFDNSRLSIFKEVYADIGDEQSIEQSLSTFSS 392
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+ + I ++ SLVL DE+GAGT+P EG AL +++L G + T+ATTH+ EL
Sbjct: 393 HMTNVVRFIEKADRDSLVLFDELGAGTDPTEGAALAIAILSHLHAQG-IRTMATTHYSEL 451
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA----- 636
K S ENA EFD L+PTY++L G+PG+S+A I+ +LGLP ++ A
Sbjct: 452 KVYALSTHGVENASCEFDVETLRPTYRLLIGIPGKSNAFAISGKLGLPSYIIDKAKEQIS 511
Query: 637 ----------------RQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
R+ A AEI E+E KTQ E
Sbjct: 512 QEDESFEDVLSTLEQSRKTIEAEEAEIARYKTEIESLKTQLEEK--------------QD 557
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
L + + +IL + R +++ + A + +K+ ++ S+ K +Q
Sbjct: 558 KLEQRKERILRDANEEAHRILREAKEYADQTMKIFNKAGKE---------SMSAKELEQK 608
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
R + + T GK + T +++T+ KDI ++
Sbjct: 609 RSELRKKMDTT--GKKMALKTPEKKKSTL------------TAKDI------------SL 642
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V S KGT+ +K + VQ+G ++ + +D+
Sbjct: 643 GDAVKVLSLNVKGTISSKPDAKGMVFVQMGILRSKVHLSDL 683
>gi|116493007|ref|YP_804742.1| MutS family ATPase [Pediococcus pentosaceus ATCC 25745]
gi|122265529|sp|Q03ES2.1|MUTS2_PEDPA RecName: Full=MutS2 protein
gi|116103157|gb|ABJ68300.1| MutS family ATPase [Pediococcus pentosaceus ATCC 25745]
Length = 785
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 191/642 (29%), Positives = 301/642 (46%), Gaps = 103/642 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L VLE+DK+ S+ F T G + LR L ++ E++ +
Sbjct: 6 LDVLEYDKIKQSIRQFIATENGTK---------------ELRELVPSSDETEVRNALKQT 50
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQL-----SLRAAIKEDAD 168
LD V++ +K+ I R + L + A L E Q+ + R I D
Sbjct: 51 LD--AVNIYRLKNGIPVPRLEDVTEALQRLKIDAALNGQELAQIGRILRATRTVINFFDD 108
Query: 169 LY---IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
L I + L Q+I QL + + + ++ +G + +SAS L++ R + +E +
Sbjct: 109 LENEEIEIIALDQVIEQLVTIPEVEERLSNSIEGNGHLLNSASSELRRIRASITRIESDV 168
Query: 226 YQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLS 282
M+ R N + L + +I R I + S F G++ SSSG +EP S
Sbjct: 169 RSRMEKFTRGNNVKYLSEPIVTIRNERYVIPARVEYRSKFGGVVHDQSSSGQTLYVEPES 228
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
V LN+EL+Q + + E+ +L L+ + D ++ + LD++NA+A Y+
Sbjct: 229 VVDLNNELRQNQVAEVHEEQRILQELSALVAPYTDTLKDNSRILGHLDLLNAKAQYAHQL 288
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
T P I S ++E I L +A HPL+ Q
Sbjct: 289 KATEPQI--------SASNE--------------INLREARHPLIDQ------------- 313
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
+K+ + GE +T LVITG
Sbjct: 314 ---------KKVVSNDIRLGGEYET------------------------------LVITG 334
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKTI LKTVGL +MA+SG+ I ++E + V F+ +FADIGDEQS+ Q+LSTFS H
Sbjct: 335 PNTGGKTITLKTVGLLQLMAQSGMFIPANENSTVRIFEEIFADIGDEQSIEQNLSTFSSH 394
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
+ I+ +SL L DE+GAGT+P EG AL +++L+ +G+ +++ TTH+ ELK
Sbjct: 395 MDNTIRILGNLNERSLALFDELGAGTDPKEGAALAIAILDKVRSTGA-VSMTTTHYPELK 453
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642
T Y NA MEFD L+PTYK+L G+PG+S+A I++RLGL ++ AR L
Sbjct: 454 TYGYERMGTINASMEFDVDTLQPTYKLLLGIPGQSNAFEISKRLGLDSDIISQARGLVDQ 513
Query: 643 ASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
S ++N +I ++ + + + +A L + H+ L++
Sbjct: 514 DSQDLNNMIKDLTTRQKRAQKINQQAVELLKQAEEYHQTLVK 555
>gi|414563279|ref|YP_006042240.1| DNA mismatch repair protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338846344|gb|AEJ24556.1| DNA mismatch repair protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 778
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 151/401 (37%), Positives = 230/401 (57%), Gaps = 45/401 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
+ +PV D+ A V+VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + ++V F+
Sbjct: 307 IQNPVANDLHFANDLAVIVITGPNTGGKTIMLKTLGLAQVMAQSGLPILADKGSRVAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++ADIGDEQS+ QSLSTFS H+ I I++Q+ S SL+L DE+GAGT+P EG +L M++
Sbjct: 367 GIYADIGDEQSIEQSLSTFSSHMTHIVEILNQADSDSLILFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + ++ T+ATTH+ ELK + ENA M FD V LKPTY+ + GVPGRS+A
Sbjct: 427 LEQLRLT-NIKTMATTHYPELKAYGIETAYVENASMAFDNVSLKPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF---LEHVHEARHFLMLSRN 677
+IA RLGL +V+ A Q A ++N +I ++E+ + LEH+ E N
Sbjct: 486 DIARRLGLAEHIVKEA-QAMTATDHDVNRIIEQLEQQTLESRKRLEHIKEVEQ-----DN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
L N R +K+ + + ++++K AA AR +V + L S S S +H++A
Sbjct: 540 LKFN--RAVKKLYNEFSHAKDKELEK---AALEAREIVDMA---LAESES-ILSQLHEKA 590
Query: 738 QQLRP-SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE 796
+ L+P ++ H K + L+ N V+K + K+
Sbjct: 591 E-LKPHEIIEAKHRLKQLAPEQSLSQN-----------------KVLK------KAKKWR 626
Query: 797 LPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
P VGD + V+++G++GT++ + + QVG +K +K
Sbjct: 627 APRVGDDIIVTAYGQRGTLL-AQLKDKRWEAQVGLIKMTLK 666
>gi|410456530|ref|ZP_11310390.1| recombination and DNA strand exchange inhibitor protein [Bacillus
bataviensis LMG 21833]
gi|409927914|gb|EKN65039.1| recombination and DNA strand exchange inhibitor protein [Bacillus
bataviensis LMG 21833]
Length = 785
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 151/432 (34%), Positives = 234/432 (54%), Gaps = 42/432 (9%)
Query: 420 ARKGEKDTNLSP---SEMQVSALELAHP-VPID------IFIARKTRVLVITGPNTGGKT 469
AR G+K P +E ++S + HP +PID I + + +VITGPNTGGKT
Sbjct: 283 ARFGKKIKASKPLMNNEGRISLYKARHPLIPIDEVVANDIMLGNEFTTIVITGPNTGGKT 342
Query: 470 ICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 529
+ LKT+GL +MA++GL + + + +++ FD+V+ADIGDEQS+ QSLSTFS H+ I +I
Sbjct: 343 VTLKTLGLCSLMAQAGLQVPALDGSELAVFDAVYADIGDEQSIEQSLSTFSSHMVNIVDI 402
Query: 530 ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589
++ SLVL DE+GAGT+P EG AL +S+L+ + G+ + IATTH+ ELK Y+ +
Sbjct: 403 LNSVDFNSLVLFDELGAGTDPQEGAALAISILDEVHKRGARV-IATTHYPELKAYGYNRE 461
Query: 590 FFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINE 649
NA +EFD L PTYK+L GVPGRS+A I++RLGL V+Q AR + +I++
Sbjct: 462 GVLNASVEFDVETLSPTYKLLLGVPGRSNAFEISKRLGLSDWVIQAARSHVSEDTNQIDK 521
Query: 650 VIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAA 709
+I +E K Q E EAR +L + LH +L + + E S + +K +D
Sbjct: 522 MIASLESSKRQAEEEQMEARDYLKQAEKLHLDLQKQMIEFYEKKDSMLEKAAEKAADIVD 581
Query: 710 IARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTV 769
A+ + A+Q+ + R+ H + +H L +
Sbjct: 582 EAK----QEAEQVIRDLRKMRTEKHAEIK------------------EHEL--------I 611
Query: 770 DKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQV 829
D A+ + K + + + + GD V V +F +KGT+++ + S E VQ+
Sbjct: 612 DAKRRLQDAAPEIKKSVNLANKKNKMHTYMPGDEVKVLTFDQKGTLLE-KVSANEWQVQI 670
Query: 830 GNMKWIMKFTDI 841
G +K +K D+
Sbjct: 671 GILKMKVKEKDM 682
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 143/310 (46%), Gaps = 35/310 (11%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETN-AAIEMQKHGS 111
+L+VLE+ K+ + A +SLGR+ + + S + +++ +RL ET+ AA ++ G+
Sbjct: 5 ALKVLEFTKVRELLLEHAASSLGRDKIKSLMPSTD--FEEVVRLQTETDEAATVLRIKGN 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L T +++ I+ L P+E + + + S ++ + E +L I
Sbjct: 63 VPLSGT----HDIRAHIKRSVIGGVLSPHELNQIASTIHASRQMKRFIEDIAAERTELSI 118
Query: 172 ------RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
R +PLT L + I +DE G + DSAS L+ R Q++ E ++
Sbjct: 119 LMEQVERIIPLT----------DLEQEIKHAIDESGEVLDSASDLLRTLRHQLRSNESRV 168
Query: 226 YQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPL 281
+ ++ +IR+ N + + V+ + R I + G ++ S+SG IEP
Sbjct: 169 REKLESMIRSSNASKMLSDAIVTIRNDRFVIPVKQEYRGHYGGIIHDQSASGQTLFIEPQ 228
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQ----LDVVNARAT 337
V LN++LQ R K + ++ LTE + ++ E E L I++ LD + A+A
Sbjct: 229 VIVQLNNQLQDIR---VKEQLEIDRILTE-LSANVAEYENELKVIVEILANLDFIFAKAR 284
Query: 338 YSLSFGGTSP 347
+ + P
Sbjct: 285 FGKKIKASKP 294
>gi|225869842|ref|YP_002745789.1| DNA mismatch repair protein [Streptococcus equi subsp. equi 4047]
gi|254766601|sp|C0MAV6.1|MUTS2_STRE4 RecName: Full=MutS2 protein
gi|225699246|emb|CAW92550.1| putative DNA mismatch repair protein [Streptococcus equi subsp.
equi 4047]
Length = 778
Score = 222 bits (566), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 149/401 (37%), Positives = 229/401 (57%), Gaps = 45/401 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
+ +PV D+ A V+VITGPNTGGKTI LKT+GLA +MA+SGL IL+ + ++V F+
Sbjct: 307 IQNPVANDLHFANDLAVIVITGPNTGGKTIMLKTLGLAQVMAQSGLPILADKGSRVAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++ADIGDEQS+ QSLSTFS H+ I I++Q+ S SL+L DE+GAGT+P EG +L M++
Sbjct: 367 GIYADIGDEQSIEQSLSTFSSHMTHIVEILNQADSDSLILFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + ++ T+ATTH+ ELK + ENA M FD V LKPTY+ + GVPGRS+A
Sbjct: 427 LEQLRLT-NIKTMATTHYPELKAYGIETAYVENASMAFDNVSLKPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF---LEHVHEARHFLMLSRN 677
+IA RLGL +V+ A Q A ++N +I ++E+ + LEH+ E N
Sbjct: 486 DIARRLGLAEHIVKEA-QAMTATDHDVNRIIEQLEQQTLESRKRLEHIKEVEQ-----DN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
L N R +K+ + + ++++K AA AR +V + + SQ +H++A
Sbjct: 540 LKFN--RAVKKLYNEFSHAKDKELEK---AALEAREIVDIALAESDSILSQ----LHEKA 590
Query: 738 QQLRP-SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE 796
+ L+P ++ H K + L+ N V+K + K+
Sbjct: 591 E-LKPHEIIEAKHRLKQLAPEQSLSQN-----------------KVLK------KAKKWR 626
Query: 797 LPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
P VGD + V+++G++GT++ + + QVG +K +K
Sbjct: 627 APRVGDDIIVTAYGQRGTLL-AQLKDKRWEAQVGLIKLTLK 666
>gi|168334894|ref|ZP_02693015.1| MutS2 family protein [Epulopiscium sp. 'N.t. morphotype B']
Length = 793
Score = 222 bits (566), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 141/398 (35%), Positives = 223/398 (56%), Gaps = 30/398 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+++ ++ L+ITGPNTGGKT+ LKT+GL +MA+ GL I + E +++ FD VFA
Sbjct: 317 VPIDVYVGKEFTTLLITGPNTGGKTVTLKTIGLFTIMAQCGLFIPAKENSELAIFDDVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
+GDEQS+ QSLSTFS H+ + I++ T+ SL+LLDE+G+GT+P+EG AL MS+LE
Sbjct: 377 GLGDEQSIEQSLSTFSAHMMNLIEILADMTTNSLILLDELGSGTDPVEGAALAMSILEHL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ + T+ATTH+ ELK S ENA EFD +L+PTYK+L GVPG+S+A I++
Sbjct: 437 RKQ-QITTVATTHYSELKLYALSTPNVENAGCEFDIQELRPTYKLLIGVPGKSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
+LG P ++ +A+ + ++ ++++E+E K L A F + L +++ +
Sbjct: 496 KLGFPEHLIDDAKVFLQKENVKMEDILVELEYSKRTALVEKENALKFRQEAETLKESIKK 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR-SLVHKRAQQLRPS 743
R+K LE + ++ ++ + R + ++ L AR SL++ L+ S
Sbjct: 556 ERQK-LEVSRQKILKRAEE--KGKELLREVEIETENILKEVRQMARESLINVDENTLQ-S 611
Query: 744 ASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDL 803
Q + TK+ K+ + +DK V+KD+K VG+
Sbjct: 612 IKQKVQNTKLTKS----------SEIDKKIGYTKPKPKVLKDVK------------VGEE 649
Query: 804 VHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V V SF + G V V S E VQ+G + ++ DI
Sbjct: 650 VLVISFNQSGIVTNV--SNNEATVQLGILPITVRLDDI 685
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 139/303 (45%), Gaps = 20/303 (6%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGRE--ATLTQLWSINQTYQDSLRLLDETNAAIEMQ-K 108
++L LE++K+ ++++A T RE L + + YQ L ++T+ A+ + K
Sbjct: 4 KALYKLEFNKIRTKLANYAITEEAREHINELRPTATPAEVYQ----LQEQTHDAVNISLK 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
G ++ + +K++I+ V+ + E L + +L+ S L+ +
Sbjct: 60 KGRPPIN----RIKQIKTSIQRVQIGGVIGSGEILNIGKVLKTSRLLK-----KYSSEET 110
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
I F L + L + L I + + + D A+P L R Q+ L K+
Sbjct: 111 TGITFNSLQRHFDSLCTYKELEYEIERCIIAEDEFSDEATPTLSNIRRQMTRLTIKVKDT 170
Query: 229 MDMLIRNENNESLFLE--VSSIHGRLCIRTGADQ-LSFKGLLL-SSSSGIGSVIEPLSAV 284
+ +I++ + E V+ GR CI A Q +FKG++ +S SG IEP + V
Sbjct: 171 IQNIIQSSQYKDXLQESIVTVRDGRQCIPIKAAQKTAFKGIVHDTSGSGATVFIEPAAVV 230
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
+N+++++ ++ + +L +EK+ +E+ II+LD++ A++ Y+L
Sbjct: 231 EMNNKIRELMSAEQDEIQVILATFSEKISFITEELLLTFKSIIELDIIFAKSEYALKINA 290
Query: 345 TSP 347
P
Sbjct: 291 RXP 293
>gi|387930060|ref|ZP_10132737.1| recombination and DNA strand exchange inhibitor protein [Bacillus
methanolicus PB1]
gi|387586878|gb|EIJ79202.1| recombination and DNA strand exchange inhibitor protein [Bacillus
methanolicus PB1]
Length = 785
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 120/261 (45%), Positives = 170/261 (65%), Gaps = 8/261 (3%)
Query: 429 LSPSEMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMM 481
L +E ++S ++ HP VP DI + + +VITGPNTGGKT+ LKTVGL +M
Sbjct: 295 LMNNEGRISLIKARHPLIPIDEVVPNDISLGKDFSTIVITGPNTGGKTVTLKTVGLCTLM 354
Query: 482 AKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLL 541
A+SGL I + + +++ F SV+ADIGDEQS+ QSLSTFS H+ I +I+++ SLVL
Sbjct: 355 AQSGLQIPALDGSEMAVFGSVYADIGDEQSIEQSLSTFSSHMVNIVDILNKVDFNSLVLF 414
Query: 542 DEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 601
DE+GAGT+P EG AL +S+L+ + G+ + IATTH+ ELK Y+ + NA +EFD
Sbjct: 415 DELGAGTDPQEGAALAISILDEVYKRGAKV-IATTHYPELKVYGYNREGVINASVEFDIE 473
Query: 602 KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQF 661
L PTYK+L GVPGRS+A I++RLGL V+ NAR GA S+++ ++I +E + Q
Sbjct: 474 TLSPTYKLLIGVPGRSNAFEISKRLGLDEKVINNARSYVGADSSQVEKMIASLESSRRQT 533
Query: 662 LEHVHEARHFLMLSRNLHKNL 682
+ EA L + LHK+L
Sbjct: 534 EADLEEANDLLKQAEKLHKDL 554
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 153/303 (50%), Gaps = 23/303 (7%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTY-QDSLRLLDETNAAIEMQKHGSC 112
L+VLE+DK+ + A +SLGRE + QL + TY + ++L +ET+ A+++
Sbjct: 6 LKVLEFDKVKEQLLEHASSSLGRE-KVNQL--VPSTYFHEVVQLQEETDEAVKV------ 56
Query: 113 SLDLTG-VDLSLVKSAIREVRRAS---PLRPNEALAVVALLQFSETLQLSLRAAIKEDAD 168
L L G V L + +RA+ L P+E + V + + S L+ + +E D
Sbjct: 57 -LRLKGNVPLGGIFDIRPHTKRAAIGGSLSPHELIQVASTVHASRQLKRFIEDLNEETND 115
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L I L + + ++ V L ++I +DE G + D AS L+ R Q++ E ++ +
Sbjct: 116 LPI----LAKYVERIIVLAELEEAIKHAIDESGEVLDGASETLRSLRQQLRTKEARVRER 171
Query: 229 MDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAV 284
++ +IR+ N + + + V+ + R I + ++ G ++ SSSG IEP + V
Sbjct: 172 LESMIRSSNAQKMLSDAIVTIRNDRFVIPVKQEYRTYYGGIIHDQSSSGQTLFIEPQAIV 231
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN++LQ R + E +L L++K+ E+E ++ + +LD + A+A YS
Sbjct: 232 QLNNDLQATRVKEQQEIERILHELSQKVGEYSGELETIVLVLAELDFMFAKARYSSKIKA 291
Query: 345 TSP 347
+ P
Sbjct: 292 SKP 294
>gi|291548598|emb|CBL24860.1| MutS2 family protein [Ruminococcus torques L2-14]
Length = 791
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 217/800 (27%), Positives = 365/800 (45%), Gaps = 141/800 (17%)
Query: 57 LEWDKLC----HSVSSFARTSLGRE-ATLTQLWSINQTYQDSLRLLDETNAA-IEMQKHG 110
LE+DK+ +SF L R +T L IN TYQ+ +T AA + + G
Sbjct: 9 LEYDKIIALLEKEATSFRGGQLCRRLKPMTDLHKIN-TYQE------QTAAAYTRIVQKG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA--- 167
S D + V+ +++ + L E L + LL + ++ R +EDA
Sbjct: 62 RISFG----DAAPVEESMKRLEIGGSLSSTELLRISRLLVNAARVKAYGRHDTQEDACDC 117
Query: 168 -DLYIRFM-PLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
D Y + PLT + + ++R +I ED D AS LKQ R + + K+
Sbjct: 118 LDEYFNLLEPLTPLSNE--IDRCII-------GED-EYSDDASSTLKQIRRSINNINDKV 167
Query: 226 YQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLS 282
+ + L+ L + ++ G R C+ A+ + +GL+ SS+G IEP++
Sbjct: 168 HATLTTLVNGSLRTYLQDAIITMRGDRYCVPVKAEYRGQVQGLIHDQSSTGSTLFIEPMA 227
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
V LN++L++ A + + +L L+E+ ++EI V+ R+ L F
Sbjct: 228 IVKLNNDLKELYAKEQEEIQVILANLSEEAAQYIEEIR-----------VDYRSLTDLDF 276
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
+ + R L +E E I + + HPL
Sbjct: 277 IFARGALAMSMRASRPLLNE-----------EGRIRIREGRHPL---------------- 309
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
L P ++ VPI + + +L+ITG
Sbjct: 310 --------------------------LDPKKV----------VPITVTLGEDFTLLIITG 333
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKT+ LKTVGL +M +SGLHI + + +++ F ++ADIGDEQS+ QSLSTFS H
Sbjct: 334 PNTGGKTVSLKTVGLFCLMGQSGLHIPAGDRSELAVFHQIYADIGDEQSIEQSLSTFSSH 393
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
+ I + + + +SLVL DE+GAGT+P EG AL +S+L + G + T+ATTH+ ELK
Sbjct: 394 MTNIVSFLKKVDERSLVLFDELGAGTDPTEGAALAISILSHLHQRG-IRTMATTHYSELK 452
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642
S ENAC EFD L+PTY++L G+PG+S+A I+ +LGLP ++++A++
Sbjct: 453 VYALSTPGVENACCEFDVESLRPTYRLLIGIPGKSNAFAISGKLGLPDYIIEDAKKRLSE 512
Query: 643 ASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQ 702
+++ ++E K + E + +L K + R++ L+ QR R ++
Sbjct: 513 QDVSFEDLLTDLETSKRTIEKEQEEIARLKKEAEDL-KAQAKQRQEKLD---DQRDRILR 568
Query: 703 KISDAA-AIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLT 761
+ ++ A AI R +A+ + K + R +++ +++ K + L
Sbjct: 569 EANEKANAILR---------------EAKEIADKTIKDFRKFGKENISASEMEKEREKLR 613
Query: 762 SNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPS 821
+ TAS+S +K K K ++ +G+ V V S GTV + +
Sbjct: 614 KKIKD----------TASASAMKAQKPKKEHKASDF-KLGESVKVLSMNLTGTVSSLPDA 662
Query: 822 KEEIVVQVGNMKWIMKFTDI 841
K + V++G + + +D+
Sbjct: 663 KGNLTVRMGILSSQVNISDL 682
>gi|402833826|ref|ZP_10882436.1| MutS2 family protein [Selenomonas sp. CM52]
gi|402279672|gb|EJU28454.1| MutS2 family protein [Selenomonas sp. CM52]
Length = 791
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 219/805 (27%), Positives = 370/805 (45%), Gaps = 145/805 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L LE+DK+ + + A + LG+E L S + + + LL ET A+ + S
Sbjct: 4 ETLDTLEYDKIRAMLEAKAGSVLGKEKARAVLPSGD--FAEVEELLRETEEAVRLSAFSS 61
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRA--AIKEDADL 169
+ + ++R + L E AV+ L F++ L ++RA A+K
Sbjct: 62 PPM-----------GGVFDIRES--LAKAERGAVLDLGDFTDLLS-TMRAMRAVK----- 102
Query: 170 YIRFMPLTQMIMQLFVNRS--------LIKSIMQVVDEDGSIKDSASPALKQSRGQVQML 221
RF +M + L ++ L + + VDE G++ D AS L + R +++
Sbjct: 103 --RFFKEVEMDLPLIKEQAKGIEILGQLERRLENSVDEHGNLLDDASVELSRIRRELRSG 160
Query: 222 ERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSV 277
R+ + M+ ++ + F + ++ R I + + SF G++ S+SG
Sbjct: 161 RRRAKEQMEAILHRTEYQKFFQDAIITQRAERNVIPIKQEYRQSFPGIVHDQSASGATLF 220
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
IEP++ V LN++L+Q + + +L L++++ + +E + LD + ARA
Sbjct: 221 IEPMALVDLNNDLKQLALAEKTEVQRILRLLSQEVGKNGSVLEGNCAILASLDFIFARAK 280
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
L DM+ + P + RE L A HPL+
Sbjct: 281 -------------LAADMQAT---RPAIN------REGRTKLVAARHPLI---------- 308
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
+ A VPIDI + R+
Sbjct: 309 ------------------------------------------DAAKVVPIDIALGESYRM 326
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
L+ITGPNTGGKT+ LKT+GL +M +SG +I ++ +++ + +V+ IGDEQS+ QSLS
Sbjct: 327 LLITGPNTGGKTVSLKTIGLFALMVQSGCYIPAAAGSEISVYTNVYTVIGDEQSIEQSLS 386
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ + ++ L+LLDEIGAGT+P EG AL M++LE F G+ TI TTH
Sbjct: 387 TFSAHMSHLVKLLECVEGTDLLLLDEIGAGTDPEEGAALAMAILEQFLARGA-STIVTTH 445
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELKT ++ + ENAC+EFD L+PTY++L G+PG S+A I+ RLGL + A+
Sbjct: 446 YSELKTFAFTREGIENACVEFDVETLRPTYRLLTGMPGASNAFAISRRLGLSEAAILRAQ 505
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
Q A A+ +V+ ++E K ++E R+ +L R
Sbjct: 506 QFIKADHAQFEKVVNQLESEKL-----MYEQRNADILERQ-------------------- 540
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
++V K+ + + + + +Q+ A Q + + +R R A + + KV +
Sbjct: 541 -QRVAKLEEKTQALKDEIREKKEQMLKKARQESANLVRRT---RREAEEIIKSLKVQFDD 596
Query: 758 HVLTSNFQ--QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ S + Q +K++ A S + + K + VGD+V+V +K TV
Sbjct: 597 LGIESRRRAMQEAREKLQEAAERSRTGLLPGKAYKEKIDMQKLAVGDVVYVRKLDQKATV 656
Query: 816 IKVEPSKEEIVVQVGNMKWIMKFTD 840
+K++ + I VQ+GN+K +K D
Sbjct: 657 LKIQGAN--IEVQLGNLKTYVKAGD 679
>gi|417891970|ref|ZP_12536027.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21200]
gi|341851256|gb|EGS92185.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21200]
Length = 782
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 136/384 (35%), Positives = 218/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
L+ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 LIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EGTAL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGTALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|379705968|ref|YP_005204427.1| Mismatch repair ATPase (MutS family) [Streptococcus infantarius
subsp. infantarius CJ18]
gi|374682667|gb|AEZ62956.1| Mismatch repair ATPase (MutS family) [Streptococcus infantarius
subsp. infantarius CJ18]
Length = 778
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 146/394 (37%), Positives = 218/394 (55%), Gaps = 46/394 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ + V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + +KV F+
Sbjct: 307 LINPVANDLHFLDELTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSKVAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I +I++ + SLVL+DE+GAGT+P EG +L +S+
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTNIVDILAAADKDSLVLVDELGAGTDPQEGASLAISI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + + T+ATTH+ ELK +F ENA MEFD L PTY + GVPGRS+A
Sbjct: 427 LEHLRLT-QVKTMATTHYPELKAYGIETEFVENASMEFDTETLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL ++V A +L + ++N +I +E E HE+R L + + +
Sbjct: 486 EIARRLGLAEVIVNEAERLTDS-DTDVNRIIERLE-------EQTHESRKRLDHIKEVEQ 537
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ L+ R + + K +++ A+A A+ +V K+ + S ++L HK + L
Sbjct: 538 DNLKFNRAVKKLYNEFSHAKDKELEKASAKAQEIVDKA---MAESEEILKNLHHKAS--L 592
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+P H K+Q + K+ S + V + R P V
Sbjct: 593 KP------HEVIEAKSQ-----------LKKLAPEVDLSKNKVLKKAKKLRA-----PRV 630
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
GD + V+++G++GT+I Q N KW
Sbjct: 631 GDDIIVTAYGQRGTLIN----------QTKNGKW 654
>gi|397906326|ref|ZP_10507138.1| Recombination inhibitory protein MutS2 [Caloramator australicus
RC3]
gi|397160629|emb|CCJ34475.1| Recombination inhibitory protein MutS2 [Caloramator australicus
RC3]
Length = 788
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 146/391 (37%), Positives = 220/391 (56%), Gaps = 30/391 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPIDI + + LVITGPNTGGKT+ LKT GL +MA +GL I S+ + V F+ VFA
Sbjct: 315 VPIDIRLGQNYNALVITGPNTGGKTVTLKTTGLLTLMAMAGLAIPCSDGSTVSVFNKVFA 374
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+K I NI+ ++ +SL+L+DE+GAGT+P EG AL MSLLE F
Sbjct: 375 DIGDEQSIEQSLSTFSSHMKNIINIVKEADEKSLILVDELGAGTDPSEGAALAMSLLEYF 434
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ G+ L +ATTH+ E+K + FENA +EFD L+PTY++L G+PG+S+A I++
Sbjct: 435 YKKGAKL-VATTHYSEIKVFAMEKEGFENASVEFDVETLRPTYRLLIGIPGKSNAFEISK 493
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE-HVHEARHFLMLSRNLHKNLL 683
RLGL ++ AR+ A+ +VI ++ KT LE + E + + NL L
Sbjct: 494 RLGLDEGIINRAREFISKDVAKFEDVIQSLQN-KTLLLEREIDEVQK--IKRENLE--LK 548
Query: 684 RTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPS 743
+ + SQR ++++K + A+++ A + + K +LR
Sbjct: 549 KEYSEKKYKLESQRDKEIKK-----------AQEEARRIIRQAKEEADAILKELNELRKR 597
Query: 744 ASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDL 803
A ++ + + + L + + + E +D+K VGD
Sbjct: 598 ALEAESIREAEEARKKLKNKLDAMSSKEEEVIVKDGMIEARDVK------------VGDE 645
Query: 804 VHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
V+VS+ KGTV+ + +K E++VQ+G MK
Sbjct: 646 VYVSTVSAKGTVLSLPDAKGEVLVQIGVMKM 676
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 144/311 (46%), Gaps = 36/311 (11%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQ-TYQDSLRLLDETNAAIEMQ-KHG 110
+ RVLE++K+ +S A +S GR+ L + N +D LR ET A ++ K G
Sbjct: 5 TFRVLEYNKIIEMLSKRAVSSKGRKMCEELLPTSNLLEVEDRLR---ETKEAYDVVLKWG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
S L L GV ++ +++ + L P+E L V +L+ ++ L+ K++
Sbjct: 62 S--LPLEGV--KDIEDSVKRAKMGFTLTPSELLRVSDILRVTKRLKSFFADGAKKE---- 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQV----QMLERKLY 226
+ + ++I LF +SL + I + + + I D AS L R + Q ++ KL
Sbjct: 114 -NYPIINEIIESLFYIKSLEEDIERAIVSEEEIDDRASEKLYSIRRAIKDKNQRVKEKLQ 172
Query: 227 QLMDMLIRNENNESLFLE---VSSIHGRLCIRTGADQLSFKGLLLS-----SSSGIGSVI 278
++ L S +L+ ++ +GR I ++ FKG + S+SG I
Sbjct: 173 SMLHSL-------SKYLQEPIITMRNGRYVIPVKSE---FKGSVAGLVHDQSASGSTLFI 222
Query: 279 EPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATY 338
EP+ V LN+E+++ E +L L+EK+ + +E+ I LD + A+A +
Sbjct: 223 EPMPIVELNNEIRELELKEKVEIERILKELSEKVAKNSEELLHDNENIAYLDFLMAKAKF 282
Query: 339 SLSFGGTSPNI 349
L + P +
Sbjct: 283 GLDLDASIPEV 293
>gi|421489730|ref|ZP_15937106.1| MutS2 family protein [Streptococcus anginosus SK1138]
gi|400374318|gb|EJP27237.1| MutS2 family protein [Streptococcus anginosus SK1138]
Length = 776
Score = 222 bits (565), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 148/386 (38%), Positives = 217/386 (56%), Gaps = 40/386 (10%)
Query: 436 VSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS 490
+ L +AHP V D++ A +VITGPNTGGKTI LKT+GLA +MA+SGL IL+
Sbjct: 297 IRLLHVAHPLIENAVANDLYFAANLTEIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILA 356
Query: 491 SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 550
E ++V FD +FADIGDEQS+ QSLSTFS H+ I +I+ ++ +LVLLDE+GAGT+P
Sbjct: 357 DEGSRVGIFDQIFADIGDEQSIEQSLSTFSSHMTNIVSILEKADENALVLLDELGAGTDP 416
Query: 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKIL 610
EG AL M++LE + T+ATTH+ ELK + +NA MEFD L+PTY+ +
Sbjct: 417 QEGAALAMAILEDL-RLRQVKTMATTHYPELKVYGIETEGVQNASMEFDTESLRPTYRFM 475
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
GVPGRS+A IA RLGL VV++A++L S ++N VI ER + Q LE +R
Sbjct: 476 QGVPGRSNAFEIARRLGLSDRVVKDAQELTDTDS-DVNRVI---ERLEKQTLE----SRK 527
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
L R + + L+ R L+ ++ R+ + + A + AQ++ A
Sbjct: 528 RLDNIREVEQENLKFNRA-LKKLYNEFNREKEAELNKARL-------EAQEIIDVALTES 579
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
+ K +LH K ++ + Q + P T S K +KQ+
Sbjct: 580 DTILK-----------NLHAKSSLKPHEIIEAKSQLKKL----APETVDLSQNKVLKQAK 624
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVI 816
+ ++ P VGD + V S+G++GT++
Sbjct: 625 KARK---PKVGDDILVISYGQRGTLV 647
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 6/171 (3%)
Query: 190 IKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIH 249
++ +Q ++E G ++ AS L R ++Q E ++ ++ +++ + + + V+S +
Sbjct: 130 LQGALQAINEGGFVESFASDNLTHIRRKIQENEVQVRDILQDILKTKGDMLVDQVVASRN 189
Query: 250 GRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
GR + T +++S G++ S+SG IEP + V LN+E+ ARA +L
Sbjct: 190 GRNVLPVKNTFRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEITNARADERYEILRIL 247
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
L+E+++ EI I LD V A+ + G P + QD++
Sbjct: 248 QELSERIRPHAAEIANNAWIIGHLDFVRAKVRFMQERGAVVPKLSDRQDIR 298
>gi|422860938|ref|ZP_16907582.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK330]
gi|327468589|gb|EGF14068.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK330]
Length = 777
Score = 222 bits (565), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 150/390 (38%), Positives = 216/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLAEVIVGHAQEQTDTDS-DVNRII---ERLEEQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S +SLH K ++ + Q + P T S K +K
Sbjct: 580 E--------------SILKSLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 622 QA---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLC 253
+Q V++ G I+ AS L + R ++Q E ++ +++ +++N+ V+S +GR
Sbjct: 134 LQAVNDGGFIESFASENLSRIRRKIQENENQVREILQEILKNKGEMLADQVVASRNGRNV 193
Query: 254 I---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ T +++S G++ S+SG IEP + V LN+E+ +RA + +L L+
Sbjct: 194 LPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSRADERYEIQRILQELS 251
Query: 310 EKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+ + EI I LD+V A+ + G P++ QD++
Sbjct: 252 DLFRPHAAEIANSAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQDIQ 298
>gi|294781853|ref|ZP_06747185.1| MutS2 protein [Fusobacterium sp. 1_1_41FAA]
gi|294481664|gb|EFG29433.1| MutS2 protein [Fusobacterium sp. 1_1_41FAA]
Length = 778
Score = 222 bits (565), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 143/418 (34%), Positives = 226/418 (54%), Gaps = 41/418 (9%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S +V +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNREVLSLERARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I++ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILAGVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEKKA-KSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ AR + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESIISKARAYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ E L L + + I+E ++ I ++ ++ + +
Sbjct: 532 EMRERFARLQEEARLDRERAKQETLIIEKQKNE-------------IIKAAYEEAEKMMN 578
Query: 724 PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVV 783
++A +LV K ++ ++ KN ++L++ ++ VE VV
Sbjct: 579 EMRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VV 626
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K IK K VGD V V S + ++K+ SKE VQ G +K + F +I
Sbjct: 627 KKIKTKVNFK------VGDRVFVKSINQFANILKINTSKESASVQAGILKLEVPFEEI 678
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L + + F E ++ G
Sbjct: 133 INKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFDEPSLANAFQERIITERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVTPVKFD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L + E ++ + D+I + + + LD++NA++ Y++ P +
Sbjct: 250 LRIAELLRNNRDDILAIGDKALYLDILNAKSIYAVDNKCEIPTV 293
>gi|320547501|ref|ZP_08041787.1| DNA mismatch repair protein MutS [Streptococcus equinus ATCC 9812]
gi|320447846|gb|EFW88603.1| DNA mismatch repair protein MutS [Streptococcus equinus ATCC 9812]
Length = 778
Score = 222 bits (565), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 145/394 (36%), Positives = 218/394 (55%), Gaps = 46/394 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +P+ D+ + V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + +KV F+
Sbjct: 307 LTNPIANDLHFLDELTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSKVAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I +I++ + SLVL+DE+GAGT+P EG +L +S+
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTNIVDILAAADKDSLVLVDELGAGTDPQEGASLAISI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + + T+ATTH+ ELK +F ENA MEFD L PTY + GVPGRS+A
Sbjct: 427 LEHLRLT-QVKTMATTHYPELKAYGIETEFVENASMEFDTETLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL ++V A +L + ++N +I +E E HE+R L + + +
Sbjct: 486 EIARRLGLAEVIVNEAERLTDS-DTDVNRIIERLE-------EQTHESRKRLDHIKEVEQ 537
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ L+ R + + K +++ A+A A+ +V K+ + S ++L HK + L
Sbjct: 538 DNLKFNRAVKKLYNEFSHAKDKELEKASAKAQEIVDKA---MAESEEILKNLHHKAS--L 592
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+P H K+Q + K+ S + V + R P V
Sbjct: 593 KP------HEVIEAKSQ-----------LKKLAPEVDLSKNKVLKKAKKLRA-----PRV 630
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
GD + V+++G++GT+I Q N KW
Sbjct: 631 GDDIIVTAYGQRGTLIN----------QTKNGKW 654
>gi|393199976|ref|YP_006461818.1| mismatch repair ATPase [Solibacillus silvestris StLB046]
gi|327439307|dbj|BAK15672.1| mismatch repair ATPase [Solibacillus silvestris StLB046]
Length = 788
Score = 222 bits (565), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 214/800 (26%), Positives = 369/800 (46%), Gaps = 131/800 (16%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
+L++LE+ K+ V++F S+G++A + + Y + LL+E + + + +
Sbjct: 6 ALKILEFHKVREQVAAFCTNSIGKQAIEELVPETD--YDTVVELLEEMDEGLAILRV-KG 62
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
++ L G+ V+ R + L P E + + + ++ S L+ + E+
Sbjct: 63 NVPLGGI--FDVRPHARRSQIGGMLSPMELMEIASTIRASRILRNFIEDIESENTIEIPH 120
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
F+ + Q+ V +L I +D++G++ DSASPAL+ R ++ E K+ Q ++ L
Sbjct: 121 FIERKE---QMPVLTALQHEINDCIDDNGTVLDSASPALRSIRQSLRSEESKVRQKLESL 177
Query: 233 IRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
R N + + ++ + R I + S G ++ S+SG IEP + + N+
Sbjct: 178 TRGANATKMLSDAIITIRNDRFVIPVKQEYRSHYGGIVHDQSASGQTLFIEPDAVIQSNN 237
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+Q+ + E +L LT ++Q EI ++ + ++DV+ A+ Y + T P
Sbjct: 238 EVQRLKVKEKAEIERILSELTLRVQEVGHEIFVLVQLLGEMDVILAKGKYGQANKCTMPK 297
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
+ +E L +A HPLL +D + E
Sbjct: 298 M----------------------NKEGYTRLVRARHPLL----------PIEDAVANTIE 325
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
R V+A+ + P NTGGK
Sbjct: 326 FGR-----------------------DVTAIVITGP-------------------NTGGK 343
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKTVGL +MA+ GL + + + +++ F+ +FADIGDEQS+ QSLSTFS H+ I +
Sbjct: 344 TVTLKTVGLCTIMAQCGLPVPALDGSELAVFEQIFADIGDEQSIEQSLSTFSSHMVNIVD 403
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I+S+ +SL+L DE+GAGT+P EG AL +++L+ + G+ + +AT+H+ ELK Y+
Sbjct: 404 ILSKFNEKSLILFDELGAGTDPQEGAALAIAILDETVDRGARV-MATSHYPELKAYGYNR 462
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
NA +EFD L PTY++L GVPGRS+A I++RLGL V+ +A+ G E+
Sbjct: 463 PSVVNASVEFDIETLSPTYRLLIGVPGRSNAFEISKRLGLSSNVIDHAKSFTGTDRHEVE 522
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKI-------LEHCASQRFRKV 701
+I +E + + EA H L+ + L R +I LE A + RK+
Sbjct: 523 SMIASLEESRLRSEREADEA-HLLLEDAQKIRAELEERLRIYDEKKENLEKKAKDKARKI 581
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLT 761
+ DA A +++ ++ R + K L + + K N +
Sbjct: 582 --VDDAKKEAETII-----------AELRKM--KENAALSVKEHELIDAKKRLDNAAPID 626
Query: 762 SNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPS 821
+N KV A A+ +R + VGD V V S+G+KGT++ + +
Sbjct: 627 NN-------KVLQKAVAAR------------ERKQNLQVGDEVKVLSYGQKGTLL--QKA 665
Query: 822 KEEIVVQVGNMKWIMKFTDI 841
E VVQ+G +K + +D+
Sbjct: 666 GNEWVVQIGILKMKLPESDL 685
>gi|423138020|ref|ZP_17125663.1| MutS2 protein [Fusobacterium nucleatum subsp. animalis F0419]
gi|371958582|gb|EHO76291.1| MutS2 protein [Fusobacterium nucleatum subsp. animalis F0419]
Length = 778
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 225/418 (53%), Gaps = 41/418 (9%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S ++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNREILSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ A+ + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESIISKAKAYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ E L L + + I+E ++ I +S ++ + +
Sbjct: 532 EMRERFARLQEEARLDRERAKQETLIIEKQKNE-------------IIKSAYEEAEKMMN 578
Query: 724 PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVV 783
++A +LV K ++ ++ KN ++L++ ++ VE VV
Sbjct: 579 EMRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VV 626
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K IK K VGD V V S + ++K+ SKE +VQ G +K + F +I
Sbjct: 627 KKIKTKVNFK------VGDRVFVKSINQFANILKINTSKESAMVQAGILKLEVPFNEI 678
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 11/162 (6%)
Query: 186 NRSLIKSIM-QVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE 244
N LI+ ++ + ++ + IKD AS L+ R + L + + + L + + F E
Sbjct: 125 NLRLIEDVINKTINAEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFEEPSLSNAFQE 184
Query: 245 --VSSIHGRLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASV 297
++ GR+ D FKGL+ SSSG IEPLS V LN+++++
Sbjct: 185 RIITERDGRMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKE 241
Query: 298 TKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
+ +LL + E ++ + D+I + ++ LD++NA++ Y+
Sbjct: 242 KEEIRKILLRIAELLRNNKDDILTIGEKVMYLDILNAKSIYA 283
>gi|422852435|ref|ZP_16899105.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK150]
gi|325693761|gb|EGD35680.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK150]
Length = 777
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 150/390 (38%), Positives = 219/390 (56%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLAEVIVGHAQEQTDTDS-DVNRII---ERLEEQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARVEAQEIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S ++LH K ++ + +T + K+ P T S K +K
Sbjct: 580 E--------------SILKNLHDKSSLKPHEIIEA---KTQLKKL-APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 622 QA---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 43.5 bits (101), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 9/182 (4%)
Query: 182 QLFVNRSLIKSI---MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENN 238
+LF N ++ + +Q V++ G I+ AS +L + R ++Q E ++ +++ +++N+
Sbjct: 119 RLFENLAVFPKLQGSLQAVNDGGFIESFASESLSRIRRKIQENENQVREILQEILKNKGE 178
Query: 239 ESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQAR 294
V+S +GR + T +++S G++ S+SG IEP + V LN+E+ +R
Sbjct: 179 MLADQVVASRNGRNVLPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSR 236
Query: 295 ASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQD 354
A + +L L++ + EI I LD+V A+ + G P++ QD
Sbjct: 237 ADERYEIQRILQELSDLFRPHAAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQD 296
Query: 355 MK 356
++
Sbjct: 297 IQ 298
>gi|418962477|ref|ZP_13514339.1| MutS2 family protein [Streptococcus anginosus subsp. whileyi CCUG
39159]
gi|383345613|gb|EID23720.1| MutS2 family protein [Streptococcus anginosus subsp. whileyi CCUG
39159]
Length = 776
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 149/386 (38%), Positives = 216/386 (55%), Gaps = 40/386 (10%)
Query: 436 VSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS 490
+ L +AHP V D++ A +VITGPNTGGKTI LKT+GLA +MA+SGL IL+
Sbjct: 297 IRLLHVAHPLIENAVANDLYFAADLTEIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILA 356
Query: 491 SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 550
E ++V FD +FADIGDEQS+ QSLSTFS H+ I +I+ Q+ +LVLLDE+GAGT+P
Sbjct: 357 DEGSQVGIFDQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQADENALVLLDELGAGTDP 416
Query: 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKIL 610
EG AL M++LE + T+ATTH+ ELK + +NA MEFD L+PTY+ +
Sbjct: 417 QEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIETEGVQNASMEFDTDSLRPTYRFM 475
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
GVPGRS+A IA RLGL VV++A++L S ++N VI ER + Q LE +R
Sbjct: 476 QGVPGRSNAFEIARRLGLSVRVVKDAQELTDTDS-DVNRVI---ERLEEQTLE----SRK 527
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
L R + + L+ R L+ ++ R+ + + A + AQ++ A
Sbjct: 528 RLDNIREVEQENLKFNRA-LKKLYNEFNREKETELNKARL-------EAQEIIDVALTES 579
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
+ K +LH K ++ + Q + P T S K +KQ+
Sbjct: 580 DTILK-----------NLHAKSSLKPHEIIEAKSQLKKL----APETVDLSQNKVLKQAK 624
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVI 816
+ ++ P VGD + V S+G +GT++
Sbjct: 625 KARK---PKVGDDILVISYGHRGTLV 647
>gi|262281894|ref|ZP_06059663.1| DNA mismatch binding protein MutS2 [Streptococcus sp. 2_1_36FAA]
gi|262262348|gb|EEY81045.1| DNA mismatch binding protein MutS2 [Streptococcus sp. 2_1_36FAA]
Length = 777
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 152/392 (38%), Positives = 219/392 (55%), Gaps = 41/392 (10%)
Query: 432 SEMQ-VSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG 485
SE Q + L++ HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SG
Sbjct: 292 SETQAIQLLQVRHPLIENAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSG 351
Query: 486 LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIG 545
L IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+G
Sbjct: 352 LPILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELG 411
Query: 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKP 605
AGT+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+P
Sbjct: 412 AGTDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIEMDWVENASMEFDTDSLRP 470
Query: 606 TYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHV 665
TY+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L
Sbjct: 471 TYRFMQGVPGRSNAFEIARRLGLSELIVSHAQEQTNTDS-DVNRII---ERLEEQTL--- 523
Query: 666 HEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPS 725
E+R L R + + L+ R + + K +++ A A+ +V L S
Sbjct: 524 -ESRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALS 577
Query: 726 ASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKD 785
S+ S Q+LH K ++ + Q + P T S K
Sbjct: 578 ESE--------------SILQNLHAKSSLKPHEIIEAKSQLKKL----APETVDLSKNKV 619
Query: 786 IKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
+KQ+ K+ P VGD + V+S+G++GT++K
Sbjct: 620 LKQA---KKHRAPKVGDDILVTSYGQRGTLVK 648
>gi|163784073|ref|ZP_02179025.1| DNA mismatch repair protein MutS [Hydrogenivirga sp. 128-5-R1-1]
gi|159880661|gb|EDP74213.1| DNA mismatch repair protein MutS [Hydrogenivirga sp. 128-5-R1-1]
Length = 769
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 178/614 (28%), Positives = 297/614 (48%), Gaps = 93/614 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM-QKHG 110
+ L++LE++ ++ F +E + L + + ++D ++L+ T A +++ K G
Sbjct: 4 KDLQLLEYNIFLEKLAGFTENEKTKEK-IKNLKPV-KNHKDLKKILNLTQAFLDIFTKEG 61
Query: 111 SCSL-DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
L + ++ +L I E S L P E L + +L S ++ LR + +++
Sbjct: 62 FFPLSNYPDIEETLKLLYIEE----SILSPVEILDITNILSISREIKNFLREKLNKES-- 115
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I F+ L + +LF +R K I +DE G +KDSAS L + R + +E+K+ ++
Sbjct: 116 -IEFLALYK---KLFSSRETEKIIKDSIDEAGFVKDSASRELYKIRKSKKEIEQKIKSIL 171
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVP 285
+ +I N N E + E ++ R I + S KG++ SS+G +EPL+ +
Sbjct: 172 EHIIHNPNYEDIIQEKIITIRKDRYVIPVKENFSSKLKGIIHDRSSTGHTIFLEPLNVIE 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN++L + +L LT ++ + I+ II+ D + + A YS
Sbjct: 232 LNNKLSDLKIKEQIEIRKILEFLTNILRNKYNNIKNTFEAIIEFDYLFSIAKYSRKIKAI 291
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
P I SK I L KA HPL L
Sbjct: 292 FPEI----------------SK--------NINLKKAKHPLFL----------------- 310
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
LS E + PID+ + R LVITGPNT
Sbjct: 311 -----------------------LSGKEFK----------PIDLILDNDKRGLVITGPNT 337
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKT+GL ++ ++G+ + E +++ FD++F DIGD QS+ Q+LST+S H+
Sbjct: 338 GGKTVALKTLGLLSLIFQTGIPVPVDEESEISIFDNIFVDIGDYQSIEQNLSTYSWHISN 397
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I I+ + +SLVLLDE+ GT+P EG+++G+ +LE E S + I T+H ++K
Sbjct: 398 IKEILENTDDKSLVLLDELIPGTDPDEGSSIGIGILEFLKEKKSYIVI-TSHFKQIKLYA 456
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
S+++F A + FD+ LKPTY +L+ G+S A IA+++G+ V++NAR+ S
Sbjct: 457 LSDEYFTVASVGFDKKNLKPTYNLLYNSVGQSMAFYIAQKIGINEEVLKNARKYINEDSL 516
Query: 646 EINEVIIEMERFKT 659
+N+ I E+ER K
Sbjct: 517 SLNKAIEELERLKV 530
>gi|422827141|ref|ZP_16875320.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK678]
gi|422852980|ref|ZP_16899644.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK160]
gi|324994245|gb|EGC26159.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK678]
gi|325697914|gb|EGD39798.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK160]
Length = 777
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 150/390 (38%), Positives = 217/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIEMDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL +VV++A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLSEVVVRHAQEQTDTDS-DVNRII---ERLEEQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S ++LH K ++ + Q + P T S K +K
Sbjct: 580 E--------------SILKNLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 622 QA---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLC 253
+Q V++ G I+ AS +L + R ++Q E ++ +++ +++N+ V+S +GR
Sbjct: 134 LQAVNDGGFIESFASESLSRIRRKIQENENQVREILQEILKNKGEMLADQVVASRNGRNV 193
Query: 254 I---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ T +++S G++ S+SG IEP + V LN+E+ +RA + +L L+
Sbjct: 194 LPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSRADERYEIQRILQELS 251
Query: 310 EKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+ + EI I LD+V A+ + G P++ QD++
Sbjct: 252 DLFRPHAAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQDIQ 298
>gi|220928895|ref|YP_002505804.1| MutS2 family protein [Clostridium cellulolyticum H10]
gi|254766596|sp|B8I1Z8.1|MUTS2_CLOCE RecName: Full=MutS2 protein
gi|219999223|gb|ACL75824.1| MutS2 family protein [Clostridium cellulolyticum H10]
Length = 792
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 136/397 (34%), Positives = 222/397 (55%), Gaps = 42/397 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID +I K L++TGPNTGGKT+ LKTVGL +M +SGL + +++ ++ F+ ++A
Sbjct: 317 VPIDFWIGEKFSSLIVTGPNTGGKTVSLKTVGLFTLMMQSGLLVPANDGTEMSVFEKIYA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+K I +I+S ++SL+LLDE+GAGT+P EG AL MS+LE
Sbjct: 377 DIGDEQSIEQSLSTFSSHMKNIVDILSGVNNKSLILLDELGAGTDPTEGAALAMSILECL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ G+ T+ATTH+ ELK S ENA EFD L+PTY++L GVPG+S+A I++
Sbjct: 437 HQMGA-TTLATTHYSELKVYAISTTGVENASCEFDVETLRPTYRLLIGVPGKSNAFAISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ +++ ++++ +E+ +++ + A + + L K+L
Sbjct: 496 RLGLTDDIIERSKEFLSQEDIRFEDILLSIEKNRSEAEKEKMRAESYRQEAERLKKDLED 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSL--------VHKR 736
+R++ A+Q+ +++K A AR ++ S +Q S+ + L V ++
Sbjct: 556 QKRRL----AAQKESELRK---AREEARRILTDSKRQADELVSEMKRLAKEQEEAEVRRQ 608
Query: 737 AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE 796
++LR ++S++ N + V+ + P K++K
Sbjct: 609 TEELRQKLNKSIN-------------NLDDSLVESI-MPRQGLVKPPKNLKP-------- 646
Query: 797 LPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
GD V + + +KGTV+ + E VQ G MK
Sbjct: 647 ----GDTVLIVNLNQKGTVLTLPDKNGEAQVQAGIMK 679
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 141/300 (47%), Gaps = 16/300 (5%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSCS 113
RVLE+DK+ + + LGRE L + Y+ ++L ETN + + + GS
Sbjct: 7 RVLEFDKILDKLKGLTASELGRELVLE--LTPQTDYRVVEKMLSETNDGVSCIMRRGSPP 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
L ++ ++ +++ + L P E L + +L+ + L+ + + E+ ++
Sbjct: 65 LG----GITDIRMSLKRLDMGGVLNPGELLRLAGVLRAARRLKGYINDKLDENNASVVK- 119
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
++I L N+ L + I + + I D+ASPAL R Q++ + + ++ +I
Sbjct: 120 ----ELISCLESNQRLEQKIDNCILSEDEIADNASPALSSIRRQIKEQQASIKDKLNSII 175
Query: 234 RNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLL-SSSSGIGSVIEPLSAVPLNDE 289
R+ + E V ++ G R I + + GL+ SS+SG IEP++ V N+
Sbjct: 176 RSTKYQKYIQESVVTMRGDRYVIPVKQEHKGDIPGLVHDSSASGATLFIEPMAVVEANNS 235
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
++Q R + +L L++ + L ++ ++ + +LD + A++ ++ + P I
Sbjct: 236 IKQLRVKEQTEIDRILAELSQDASLVLPQLNANMSIMARLDFIFAKSKLAIDYNCICPKI 295
>gi|226323501|ref|ZP_03799019.1| hypothetical protein COPCOM_01276 [Coprococcus comes ATCC 27758]
gi|225208185|gb|EEG90539.1| MutS2 family protein [Coprococcus comes ATCC 27758]
Length = 791
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 197/730 (26%), Positives = 332/730 (45%), Gaps = 130/730 (17%)
Query: 124 VKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA----DLYI-RFMPLTQ 178
V +++ + S L E L + LLQ + ++ R +D D+Y + PLT
Sbjct: 71 VSDSLKRLEIGSALSAPELLRIGKLLQTTARIKSYGRHENADDQADCLDVYFEQLAPLTP 130
Query: 179 MIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENN 238
+ + ++R ++ ED I D AS LKQ R + + K++ M L+
Sbjct: 131 LSAE--IDRC-------ILGED-EISDDASSKLKQIRRSINGMNDKIHSTMTGLLNGSMR 180
Query: 239 ESLFLEVSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLNDELQQARA 295
L + ++ G R C+ A+ S L+ S GS IEP++ V LN++L++ A
Sbjct: 181 TYLQDAIITMRGDRYCLPVKAEYRSQVNGLIHDQSATGSTLFIEPMAVVKLNNDLKELYA 240
Query: 296 SVTKAEEDVLLALTEKMQVD----LDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFL 351
E++ + + ++ VD ++EI +++LD + A+ +L
Sbjct: 241 Q----EQEEIQVILARLSVDAAEYIEEIRLNYKALVELDFIFAKGALAL----------- 285
Query: 352 PQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRR 411
DM S PV + E I + + HPLL R
Sbjct: 286 --DMNAS---RPVFNT------EGRIRIREGRHPLL----------------------DR 312
Query: 412 RKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTIC 471
+K+ VPI + + +LVITGPNTGGKT+
Sbjct: 313 KKV------------------------------VPISLTLGDTFDLLVITGPNTGGKTVS 342
Query: 472 LKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS 531
LKTVGL +M ++GLHI + + +++ F+ V+ADIGDEQS+ QSLSTFS H+ + + ++
Sbjct: 343 LKTVGLFTLMGQAGLHIPALDRSELAVFNQVYADIGDEQSIEQSLSTFSSHMTNVVSFLN 402
Query: 532 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591
SLVL DE+GAGT+P EG AL +++L G + T+ATTH+ ELK S
Sbjct: 403 HVDENSLVLFDELGAGTDPTEGAALAIAILSHLHNRG-IRTMATTHYSELKVFALSTPGV 461
Query: 592 ENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI 651
ENAC EFD L PTY +L G+PG+S+A I+E+LGLP ++Q+A+ +++
Sbjct: 462 ENACCEFDVETLSPTYHLLIGIPGKSNAFAISEKLGLPDYIIQDAKTHLTEEDESFEDLL 521
Query: 652 IEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIA 711
++E+ + + E + L L + K+ +QR R ++ +A A A
Sbjct: 522 TDLEQSRKTIEKEREEVASYRREMERLKSELKNQQEKL----DTQRDRIIR---EANARA 574
Query: 712 RSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDK 771
+V +A+ + + R S+ +++ K + + +
Sbjct: 575 TDIVQ-----------EAKDFADETMKNFRKFGKASISASEMEKERERIRKQLSK----- 618
Query: 772 VEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGN 831
T + + ++ K S K ++ ++GD V V S GTV + +K + VQ+G
Sbjct: 619 -----TENKNRLEKKKPSKAYKASDF-HLGDSVKVLSMNLTGTVNSLPDAKGNLFVQMGI 672
Query: 832 MKWIMKFTDI 841
++ + +D+
Sbjct: 673 LRSQVNISDL 682
>gi|125717226|ref|YP_001034359.1| DNA mismatch repair protein [Streptococcus sanguinis SK36]
gi|229486385|sp|A3CKV4.1|MUTS2_STRSV RecName: Full=MutS2 protein
gi|125497143|gb|ABN43809.1| DNA mismatch repair protein, putative [Streptococcus sanguinis
SK36]
Length = 777
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 217/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGLDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA+RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIAQRLGLSEVIVGHAQEQTDTDS-DVNRII---ERLEEQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S ++LH K ++ + Q + P T S K +K
Sbjct: 580 E--------------SILKNLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 622 QA---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLC 253
+Q V++ G I+ AS +L + R ++Q E ++ +++ +++N+ V+S +GR
Sbjct: 134 LQAVNDGGFIESFASESLSRIRRKIQENENQVREILQEILKNKGEMLADQVVASRNGRNV 193
Query: 254 I---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ T +++S G++ S+SG IEP + V LN+E+ +RA + +L L+
Sbjct: 194 LPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSRADERYEIQRILQELS 251
Query: 310 EKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+ + EI I LD+V A+ + G P++ QD++
Sbjct: 252 DLFRPHAAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQDIQ 298
>gi|438001664|ref|YP_007271407.1| Recombination inhibitory protein MutS2 [Tepidanaerobacter
acetatoxydans Re1]
gi|432178458|emb|CCP25431.1| Recombination inhibitory protein MutS2 [Tepidanaerobacter
acetatoxydans Re1]
Length = 549
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 151/219 (68%), Gaps = 7/219 (3%)
Query: 443 HP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKV 496
HP VP+D+++ + +L+ITGPNTGGKT+ LKTVGL ++MA+SGLH+ + E +V
Sbjct: 307 HPLLKGEVVPLDVYLGDEFNILIITGPNTGGKTVALKTVGLFILMAQSGLHLPAQEGTEV 366
Query: 497 PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556
F+ VFADIGDEQS+ QSLSTFS H+K I I+ +T SL++LDE+GAGT+P EG AL
Sbjct: 367 SIFEDVFADIGDEQSIEQSLSTFSSHMKNIKEILDLATKDSLIILDELGAGTDPTEGAAL 426
Query: 557 GMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGR 616
M++L E GS + +ATTH+ ELKT +S + ENA MEFD L PTY++ G+PG+
Sbjct: 427 AMAILNYLYEKGSRV-LATTHYSELKTFAFSKEGVENASMEFDIQTLSPTYRLTIGIPGK 485
Query: 617 SSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEME 655
S+A IA+RLGL VV + L S ++ +++ +E
Sbjct: 486 SNAFEIAKRLGLKQEVVDLGKSLMAEESLKLEDLLTHIE 524
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 146/297 (49%), Gaps = 17/297 (5%)
Query: 56 VLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLD-ETNAAIEMQKHGSCSL 114
+LE+DK+ + +A +SL +E S ++ D +++L ET+ + + G +
Sbjct: 8 ILEYDKIKSILMEYAVSSLAKEKIARMRPSSDE---DLVKMLQRETSEGLALLNSG-IKI 63
Query: 115 DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFM 174
L G+ +++++ + S L P E L + + ++ + ++ + K+ AD I
Sbjct: 64 SLRGI--KDIRNSLNLAKLGSVLSPGELLDIASTMRAARLIKSAWNE--KKPADSVI--- 116
Query: 175 PLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIR 234
+ +++ L + +SL + I + + D I D+ASP L R Q + L + + ++ +I
Sbjct: 117 -INEIVNGLHIFQSLEEKIEKAIVSDEEIADNASPKLSSIRRQKKNLAQSIRNKLNEIIS 175
Query: 235 NENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDEL 290
+ + + V+ R + + + S +G++ S+SG IEP++ + +N+EL
Sbjct: 176 SPYYQKALQDPIVTVRQDRYVVPVKQEFRGSIQGVIHDQSASGATLYIEPMAVMQMNNEL 235
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+Q K E +L ++K+Q + D I L G+ LD + A+A YSL GT P
Sbjct: 236 RQLEIEEKKEIERILWDFSKKVQENYDFIHDTLYGLAHLDFIMAKAGYSLDIKGTEP 292
>gi|296327726|ref|ZP_06870266.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296155164|gb|EFG95941.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 778
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 225/418 (53%), Gaps = 41/418 (9%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S ++ +LE A HP P+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNKEILSLEKARHPFIDKDKVTPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ AR+ + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESIISKAREYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ E L L + + I+E ++ I +S ++ + +
Sbjct: 532 EMRERFARLQEEARLDRERAKQETLIIEKQKNE-------------IIKSAYEEAEKMMN 578
Query: 724 PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVV 783
++A +LV K ++ ++ KN ++L++ ++ VE VV
Sbjct: 579 EMRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VV 626
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K IK K VGD V V S + ++K+ SKE +VQ G +K + F +I
Sbjct: 627 KKIKTKVNFK------VGDRVFVKSINQFANILKINTSKESAMVQSGILKLEVPFDEI 678
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 10/176 (5%)
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
++ L +MI + R + I + ++ + IKD AS L+ R + L + + +
Sbjct: 112 KYKQLREMIGNIPNLRVIEDVINKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEE 171
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAV 284
L + + F E ++ GR+ D FKGL+ SSSG IEPLS V
Sbjct: 172 LFEEPSLSNAFQEKIITERDGRMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIV 228
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
LN+++++ + +LL + E ++ + D+I + ++ LD++NA++ Y++
Sbjct: 229 SLNNKMRELETKEKEEIRKILLRIAELLRNNKDDILIIGEKVMYLDILNAKSIYAV 284
>gi|326693335|ref|ZP_08230340.1| DNA mismatch repair protein MutS2 [Leuconostoc argentinum KCTC
3773]
Length = 801
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 225/799 (28%), Positives = 351/799 (43%), Gaps = 126/799 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREAT-----LTQLWSINQTYQDSLR--LLDETNAAIEM 106
L LE+DK+ + F T +GR+ T + IN Q++ L+D I +
Sbjct: 6 LTTLEYDKIKAQLQDFLATPVGRQEADQLQPETDVTVINAWLQETADGVLIDRLKGGIPL 65
Query: 107 QKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
K + L + ++ SA ++ LR A+A E + SL+ ++
Sbjct: 66 AKLADITPHLKRLKINASLSATELSELSTVLRNTNAIAHFFEQMADEAIGDSLQVLPEQA 125
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
A+L +P +L + I +D G I D AS LK RG++ E+ +
Sbjct: 126 ANLAT--LP------------TLTQQIEIAIDATGRINDEASFDLKAIRGKITGNEQAVK 171
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSA 283
M R + + L + +I R + A+ S G ++ S G IEP +
Sbjct: 172 TKMQGYTRGKTAQYLSDPIVTIRADRYVLPVKAEYRSQFGGVVHDQSQTGQTLYIEPQAV 231
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN++L + R E+ VL L+ + +EI + + + D VNA+A +
Sbjct: 232 VELNNKLSELRVKEQAEEQRVLQELSAALAPYTEEIARNVAILGHFDFVNAKARLAARLD 291
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
P + +P E + L +A+HPLL
Sbjct: 292 AMQPVV------------DP----------ENHVALQQAWHPLL---------------- 313
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
D N++ V DI + + ++ITGP
Sbjct: 314 ----------------------DKNVA--------------VANDIILGEDYKAIIITGP 337
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKTI +KT+GL +MA+SGL I + + V F VFADIGDEQS+ QSLSTFS H+
Sbjct: 338 NTGGKTITIKTLGLLQLMAQSGLFITTKRPSTVGVFHEVFADIGDEQSIEQSLSTFSSHM 397
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I +++ Q ++LV+ DE+GAGT+P EG AL +++L+ A G+ + IATTH+ ELK
Sbjct: 398 ANIVSMLDQIDDKTLVIFDELGAGTDPAEGAALAIAILDKVASLGAYV-IATTHYPELKL 456
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
Y+ NA M FD LKPTY+ L GVPG+S+A+ IA+RLG V+ A L +
Sbjct: 457 YGYNRPETLNASMVFDVETLKPTYQFLMGVPGQSNALAIAKRLGFGDDVIGAATALTDES 516
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQK 703
++N++I ++ + +H E L S L + LE R R V
Sbjct: 517 DQDLNQMIADLVAQREAVKQHDAELTMQLK-STAEQAEALAAKEAQLER---DRARIVLD 572
Query: 704 ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763
+ A + K A+QL S+ R QQ + Q L K
Sbjct: 573 AKNEANHIVAATKKQAEQLI---SEIRKERLNAGQQTGKLSEQDLQAKKAA--------- 620
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+DK+ + S+ K+ K + KR + GD + V S+G++GT++K S
Sbjct: 621 -----LDKLRQ----NDSLEKN-KVLQKAKRAKQLAAGDEIVVQSYGQQGTLVK-RHSNG 669
Query: 824 EIVVQVGNMKWIMKFTDIV 842
+ V++G +K ++ DIV
Sbjct: 670 QWEVEMGILKMLVDEGDIV 688
>gi|262067259|ref|ZP_06026871.1| DNA mismatch repair protein MutS [Fusobacterium periodonticum ATCC
33693]
gi|291379033|gb|EFE86551.1| DNA mismatch repair protein MutS [Fusobacterium periodonticum ATCC
33693]
Length = 778
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 143/418 (34%), Positives = 226/418 (54%), Gaps = 41/418 (9%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S +V +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNREVLSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I++ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILAGVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEKKA-KSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ AR + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESIISKARAYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ E L L + + I+E ++ I ++ ++ + +
Sbjct: 532 EMRERFARLEEEARLDRERAKQETLIIEKQKNE-------------IIKAAYEEAEKMMN 578
Query: 724 PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVV 783
++A +LV K ++ ++ KN ++L++ ++ VE VV
Sbjct: 579 EMRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VV 626
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K IK K VGD V V S + ++K+ SKE VQ G +K + F +I
Sbjct: 627 KKIKTKVNFK------VGDRVFVKSINQFANILKINTSKESASVQAGILKLEVPFEEI 678
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L + + F E ++ G
Sbjct: 133 INKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFDEPSLANAFQERIITERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVTPVKFD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L + E ++ + D+I + + + LD++NA++ Y++ P +
Sbjct: 250 LRIAELLRNNRDDILAIGDKALYLDILNAKSIYAVDNKCEIPTV 293
>gi|422845877|ref|ZP_16892560.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK72]
gi|325688400|gb|EGD30418.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK72]
Length = 777
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 150/390 (38%), Positives = 219/390 (56%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLKQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLAEVIVGHAQEQTDTDS-DVNRII---ERLEEQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S ++LH K ++ + +T + K+ P T S K +K
Sbjct: 580 E--------------SILKNLHDKSSLKPHEIIEA---KTQLKKL-APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 622 QA---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLC 253
+Q V++ G I+ AS +L + R ++Q E ++ +++ +++N+ V+S +GR
Sbjct: 134 LQAVNDGGFIESFASESLSRIRRKIQENENQVREILQEILKNKGEMLADQVVASRNGRNV 193
Query: 254 I---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ T +++S G++ S+SG IEP + V LN+E+ +RA + +L L+
Sbjct: 194 LPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSRADERYEIQRILQELS 251
Query: 310 EKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+ + EI I LD+V A+ + G P++ QD++
Sbjct: 252 DLFRPHAAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQDIQ 298
>gi|19704902|ref|NP_602397.1| DNA mismatch repair protein mutS [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|81763629|sp|Q8RIK8.1|MUTS2_FUSNN RecName: Full=MutS2 protein
gi|19712795|gb|AAL93696.1| DNA mismatch repair protein mutS [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 778
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 225/418 (53%), Gaps = 41/418 (9%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S ++ +LE A HP P+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNKEILSLEKARHPFIDKDKVTPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ AR+ + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESIISKAREYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ E L L + + I+E ++ I +S ++ + +
Sbjct: 532 EMRERFARLQEEARLDRERAKQETLIIEKQKNE-------------IIKSAYEEAEKMMN 578
Query: 724 PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVV 783
++A +LV K ++ ++ KN ++L++ ++ VE VV
Sbjct: 579 EMRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VV 626
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K IK K VGD V V S + ++K+ SKE +VQ G +K + F +I
Sbjct: 627 KKIKTKVNFK------VGDRVFVKSINQFANILKINTSKESAMVQSGILKLEVPFDEI 678
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 86/176 (48%), Gaps = 10/176 (5%)
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
++ L +MI + R + I + ++ + IKD AS L+ R + L + + +
Sbjct: 112 KYKQLREMIGNIPNLRVIEDVINKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEE 171
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAV 284
L + + F E ++ GR+ D FKGL+ SSSG IEPLS V
Sbjct: 172 LFEEPSLSNAFQEKIITERDGRMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIV 228
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
LN+++++ + +LL + E ++ + D+I + ++ LD++NA++ Y++
Sbjct: 229 SLNNKMRELETKEKEEIRKILLRIAELLRNNKDDILIIGEKVMYLDILNAKSIYAV 284
>gi|406665755|ref|ZP_11073526.1| MutS2 protein [Bacillus isronensis B3W22]
gi|405386274|gb|EKB45702.1| MutS2 protein [Bacillus isronensis B3W22]
Length = 788
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 214/800 (26%), Positives = 368/800 (46%), Gaps = 131/800 (16%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
+L+ LE+ K+ V++F S+G++A + + Y + LL+E + + + +
Sbjct: 6 ALKTLEFHKVREQVAAFCTNSIGKQAIEELVPETD--YDTVVELLEEMDEGLAILRV-KG 62
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
++ + G+ V+ R + L P E + + + ++ S L+ + E+
Sbjct: 63 NVPMGGI--FDVRPHARRSQIGGMLSPMELMEIASTIRASRILRNFIEDIESENTIEIPH 120
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
F+ + Q+ V +L I +D++G++ DSASPAL+ R ++ E K+ Q ++ L
Sbjct: 121 FIERKE---QMPVLTALQHEINDCIDDNGTVLDSASPALRSIRQSLRSEESKVRQKLESL 177
Query: 233 IRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
R N + + ++ + R I + S G ++ S+SG IEP + + N+
Sbjct: 178 TRGSNATKMLSDAIITIRNDRFVIPVKQEYRSHYGGIVHDQSASGQTLFIEPDAVIQSNN 237
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+Q+ + E +L LT K+Q EI ++ + ++DV+ A+ Y + T P
Sbjct: 238 EVQRLKVKEKAEIERILSELTLKVQEVGHEIFVLVQLLGEMDVILAKGKYGQANKCTMPK 297
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
+ +E L +A HPLL +D + E
Sbjct: 298 M----------------------NKEGYTRLVRARHPLL----------PIEDAVANTIE 325
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
R V+A+ + P NTGGK
Sbjct: 326 FGR-----------------------DVTAIVITGP-------------------NTGGK 343
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LKTVGL +MA+ GL + + + +++ F+ +FADIGDEQS+ QSLSTFS H+ I +
Sbjct: 344 TVTLKTVGLCTIMAQCGLPVPALDGSELAVFEQIFADIGDEQSIEQSLSTFSSHMVNIVD 403
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I+S+ +SL+L DE+GAGT+P EG AL +++L+ + G+ + +AT+H+ ELK Y+
Sbjct: 404 ILSKFNEKSLILFDELGAGTDPQEGAALAIAILDETVDRGARV-MATSHYPELKAYGYNR 462
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
NA +EFD L PTY++L GVPGRS+A I++RLGL V+ +A+ G E+
Sbjct: 463 PSVVNASVEFDIETLSPTYRLLIGVPGRSNAFEISKRLGLSSNVIDHAKSFTGTDRHEVE 522
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKI-------LEHCASQRFRKV 701
+I +E + + EA H L+ + L R +I LE A + RK+
Sbjct: 523 SMIASLEESRLRSEREADEA-HLLLEDAQKIRAELEERLRIYDEKKENLEKKAKDKARKI 581
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLT 761
+ DA A +++ ++ R + K L + + K N +
Sbjct: 582 --VDDAKKEAETII-----------AELRKM--KENAALSVKEHELIDVKKRLDNAAPID 626
Query: 762 SNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPS 821
+N KV A A+ +R + VGD V V S+G+KGT++ + +
Sbjct: 627 NN-------KVLQKAVAAR------------ERKQNLQVGDEVKVLSYGQKGTLL--QKA 665
Query: 822 KEEIVVQVGNMKWIMKFTDI 841
E VVQ+G +K + +D+
Sbjct: 666 GNEWVVQIGILKMKLPESDL 685
>gi|352518027|ref|YP_004887344.1| MutS2 protein [Tetragenococcus halophilus NBRC 12172]
gi|348602134|dbj|BAK95180.1| MutS2 protein [Tetragenococcus halophilus NBRC 12172]
Length = 792
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 166/558 (29%), Positives = 264/558 (47%), Gaps = 89/558 (15%)
Query: 163 IKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLE 222
+KED + R + + L R +KS +DEDG + D AS LK R + E
Sbjct: 112 LKEDETPFNRLYAWQEQLTALPALRKRLKS---AIDEDGRVTDEASEELKNIRRNITRSE 168
Query: 223 RKLYQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIE 279
+ + + +D +I + L + ++ R I + + G ++ SSSG IE
Sbjct: 169 QSIRENLDGIIHGKQARYLSDALVTMRNERYVIPVRQENRNVFGGVVHDQSSSGQTLFIE 228
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDL--DEIEKMLNGII--QLDVVNAR 335
P V +N+ L+Q + AE D + + ++ +L E M N + + D +NA+
Sbjct: 229 PGQVVEMNNRLRQYQI----AERDEIARILSELSAELVPSRKEIMHNAYVIGKFDFMNAK 284
Query: 336 ATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKT 395
A ++ P + + + +Y +A HPLL Q T
Sbjct: 285 ARFAKDLKAVVPLV----------------------DEDNHVYFKQARHPLLDQ-----T 317
Query: 396 QQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKT 455
Q D I I
Sbjct: 318 QVIAND-----------------------------------------------IMIGEDY 330
Query: 456 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQS 515
+ +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIGDEQS+ Q+
Sbjct: 331 QAVVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEDSQMGIFNEVFADIGDEQSIEQN 390
Query: 516 LSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIAT 575
LSTFS H+ I ++++Q SLVL DE+GAGT+P EG AL +++L+ A + + +AT
Sbjct: 391 LSTFSSHMTTIVDVLNQVDKNSLVLFDELGAGTDPQEGAALAIAILDDLAAKQAYV-MAT 449
Query: 576 THHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQN 635
TH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLGL ++ +
Sbjct: 450 THYPELKVYGYNRPKTVNASMEFDVDTLSPTYRLLIGVPGRSNAFEISRRLGLDQTLIDS 509
Query: 636 ARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCAS 695
A+Q+ S ++NE+I ++E + E R+++ ++ LH++L + E +
Sbjct: 510 AKQIMNGESQDLNEMITDLENRRKMAETEYLELRNYVSKAKQLHEDLQEAYQYFYEQKEN 569
Query: 696 QRFRKVQKISDAAAIARS 713
+ + K +D A+
Sbjct: 570 EFAKARSKANDIVEQAKD 587
>gi|383754385|ref|YP_005433288.1| putative MutS2 protein [Selenomonas ruminantium subsp. lactilytica
TAM6421]
gi|381366437|dbj|BAL83265.1| putative MutS2 protein [Selenomonas ruminantium subsp. lactilytica
TAM6421]
Length = 792
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 213/791 (26%), Positives = 387/791 (48%), Gaps = 123/791 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
+S +VLE+ K+ ++ +A ++LG+E + S + + + L ++T A+++ +
Sbjct: 4 DSFKVLEYRKITDKLAEYAGSALGKEKAHELVPSSD--FAEVLEWQEQTTEAVKVLSMSA 61
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
L G+ D+ L+ +++ + + L E +++ + T++ R DL
Sbjct: 62 PPLG--GIRDIRLL---LKKAGKGAILELEELQNIMSTMYAMRTIKYFFR-------DLE 109
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+ L + L + L +++ V+DE G++++ AS L++ R +++ + ++ ++
Sbjct: 110 MESPILQEWARSLEILGQLERNLNNVIDEHGNMREDASVELRRIRRELKSSQTRIKDKIN 169
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
++ + + +F + V+ R I A+ + F GL+ S+SG IEP++ V L
Sbjct: 170 AILHDGAYQKMFQDAIVTVRDERYVIPVKAEYRAHFPGLIHDQSASGSTLFIEPMAVVEL 229
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N++++Q L L E Q ++ I + L+G IQ R +L S
Sbjct: 230 NNDVKQ-------------LTLAE--QQEIQRILRQLSGEIQ------REKETL-----S 263
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
N + D+ + + + + KA PLL N
Sbjct: 264 ANCEILGDIDFTFAKARLANAM------------KAVRPLL------------------N 293
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
E R T LS + + A++ P I I + R+L+ITGPNTG
Sbjct: 294 EEGR----------------TVLSNARHPLIAVDKVVPTTIS--IGQDYRMLLITGPNTG 335
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ +KT+GL V+MA++GL++ + +++ + +++ADIGDEQS+ QSLSTFS H+ I
Sbjct: 336 GKTVTMKTLGLLVLMAQAGLYLPVDQGSEIALYANIYADIGDEQSIEQSLSTFSAHMTHI 395
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
+I+ + S L+LLDE+GAGT+P EG AL MS+LE E + TIATTH+ ELKT Y
Sbjct: 396 VSILDKVESDDLLLLDELGAGTDPEEGAALAMSILEKLLEVQA-TTIATTHYSELKTFAY 454
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ + ENAC+EFD L+PTY++L G+PG S+A I++RLGL ++ A+QL A A+
Sbjct: 455 TREGIENACVEFDIETLRPTYRLLIGIPGASNAFAISKRLGLADSLILRAQQLVKADHAQ 514
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
VI E+E K + + + + L + LL+ + E + ++ ++K D
Sbjct: 515 FEHVINELENEKMMYEQRNADIAERQARVKKLEEKLLKAK----EELSQKKGDIIRKAKD 570
Query: 707 AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQ 766
+A +L+ ++ ++ +Q + + + R A Q+
Sbjct: 571 KSA---ALIRQTRRESEEVINQLKEQFDDQGIRARQQAIQNARA---------------- 611
Query: 767 TTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIV 826
+++ A K + Q +K+ VGD V+V +KGTV++++ +++
Sbjct: 612 -KINEASAKANPGIMAQKGVGQRIDLKKI---RVGDTVYVKKLDQKGTVLEIQG--KDLT 665
Query: 827 VQVGNMKWIMK 837
VQVG ++ +K
Sbjct: 666 VQVGALRTKLK 676
>gi|422877961|ref|ZP_16924431.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK1056]
gi|332358156|gb|EGJ35986.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK1056]
Length = 777
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 216/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLSEVIVGHAQEQTDTDS-DVNRII---ERLEEQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDKIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S ++LH K ++ + Q + P T S K +K
Sbjct: 580 E--------------SILKNLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 622 QT---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 43.5 bits (101), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLC 253
+Q V++ G I+ AS +L + R ++Q E ++ +++ +++N+ V+S +GR
Sbjct: 134 LQAVNDGGFIESFASESLSRIRRKIQENENQVREILQEILKNKGEMLADQVVASRNGRNV 193
Query: 254 I---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ T +++S G++ S+SG IEP + V LN+E+ +RA + +L L+
Sbjct: 194 LPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSRADERYEIQRILQELS 251
Query: 310 EKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+ + EI I LD+V A+ + G P++ QD++
Sbjct: 252 DLFRPHAAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQDIQ 298
>gi|452995728|emb|CCQ92597.1| MutS2 protein [Clostridium ultunense Esp]
Length = 792
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 139/401 (34%), Positives = 226/401 (56%), Gaps = 40/401 (9%)
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
LE VPIDI++ + LVITGPNTGGKT+ LKTVGL +MA+SG+HI + +++
Sbjct: 313 LEPKEVVPIDIYLGKGFNTLVITGPNTGGKTVTLKTVGLLTLMAQSGIHIPADFNSQIGV 372
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
FD +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+L DE+GAGT+P EG AL M
Sbjct: 373 FDQIFADIGDEQSIEQSLSTFSSHMTNIVDILDKVEQNSLILFDELGAGTDPTEGAALAM 432
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
S+L+ + ++ TIATTH+ +LK + D NA +EFD L PTY++L GVPG+S+
Sbjct: 433 SILDHLLKL-NIRTIATTHYSQLKIYALTTDRVRNASVEFDVETLSPTYRLLIGVPGKSN 491
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A I++RLGL G ++ A+ L + E +V+ +++ + E+ EA L
Sbjct: 492 AFEISKRLGLQGYIIDYAKTLVSKENVEFEDVLQAIDKDRKIIEENRFEAER-------L 544
Query: 679 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
++ + + ++ + + + + I+ A ARS++ + ++ ++ R +
Sbjct: 545 KSDVEKLKEELTKEKEKTKAEREKIITRAKEEARSILRAAKEESDHIVTELRHI------ 598
Query: 739 QLRPSASQSLHCTKVGKNQHVLTSNFQQ---TTVDKVEHPATASSSVVKDIKQSPRVKRT 795
T++ K+++ Q+ +++D+VE SS+ KD+ VK
Sbjct: 599 -----------STEIEKDRNKKIQEAQEKLKSSLDQVE------SSLSKDV---LNVKSK 638
Query: 796 ELP---NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
++P +G++V V S + G V+++ + VQVG MK
Sbjct: 639 KIPKNLKIGEMVEVLSLNQIGNVLELPDENGNVQVQVGIMK 679
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 140/303 (46%), Gaps = 18/303 (5%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM-QKHG 110
++ RVLE+ K+ ++ A + LG++ SI + ++ L ET A+E+ K+G
Sbjct: 4 KTFRVLEYKKIVEKLAEKAESELGKKMVKEIKPSI--SLEEVEYLQRETKEALELIMKNG 61
Query: 111 SCSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ L G+ D+S ++ L PN L V L+ S +L+ ++ +E+
Sbjct: 62 NPPL--FGIFDIS---HELKMAEIGGTLNPNNLLKVSDSLRVSRSLKKYMKELKEEET-- 114
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I+F L +I L + + I + + I D+ASP L+ R Q+ + +
Sbjct: 115 -IKFPILQGLISSLRALKFIEDEINNAIINENEISDNASPTLRNIRRQIINKNESIRNRL 173
Query: 230 DMLIRNENNESLFLEVSSI---HGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAV 284
+ +I + + FL+ S + GR + + + F GL+ SSSG +EP++ V
Sbjct: 174 NSIISSPKYKK-FLQDSIVTMREGRYVVPIKQENKAYFPGLVHDQSSSGATLFVEPMAVV 232
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+EL++ + E +L L+ + + I N + +LD + A+ +L G
Sbjct: 233 ELNNELRELEIKEREEIERILKELSALVAEEAKNIRNNQNILQRLDFIFAKGKLALEMDG 292
Query: 345 TSP 347
T P
Sbjct: 293 TKP 295
>gi|422859283|ref|ZP_16905933.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK1057]
gi|327459063|gb|EGF05411.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK1057]
Length = 777
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 216/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLSEVIVGHAQEQTDTDS-DVNRII---ERLEDQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S ++LH K ++ + Q + P T S K +K
Sbjct: 580 E--------------SILKNLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 622 QA---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 86/167 (51%), Gaps = 6/167 (3%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLC 253
+Q V++ G I+ AS +L + R ++Q E ++ +++ +++N+ V+S +GR
Sbjct: 134 LQAVNDGGFIESFASESLSRIRRKIQENENQVREILQEILKNKGEMLADQVVASRNGRNV 193
Query: 254 I---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ T +++S G++ S+SG IEP + V LN+E+ +RA + +L L+
Sbjct: 194 LPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSRADERYEIQRILQELS 251
Query: 310 EKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+ + + EI I LD+V A+ + G P++ QD++
Sbjct: 252 DLFRPHIAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQDIQ 298
>gi|421895098|ref|ZP_16325576.1| MutS2 family protein [Pediococcus pentosaceus IE-3]
gi|385272018|emb|CCG90948.1| MutS2 family protein [Pediococcus pentosaceus IE-3]
Length = 785
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 193/645 (29%), Positives = 301/645 (46%), Gaps = 109/645 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L VLE+DK+ S+ F T G + LR L ++ E++ +
Sbjct: 6 LDVLEYDKIKQSIRQFIATENGTK---------------ELRELVPSSDETEVRNALKQT 50
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQL-----SLRAAIKEDAD 168
LD V++ +K+ I R + L + A L E Q+ + R I D
Sbjct: 51 LD--AVNIYRLKNGIPVPRLEDVTEALQRLKIDAALNGQELAQIGRILRATRTVINFFDD 108
Query: 169 LY---IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
L I + L Q+I QL + + + ++ +G + +SAS L++ R + +E +
Sbjct: 109 LENEEIEIIALDQVIEQLVTIPEVEERLSNSIEGNGHLLNSASSELRRIRASITRIESDV 168
Query: 226 YQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLS 282
M+ R N + L + +I R I + S F G++ SSSG +EP S
Sbjct: 169 RSRMEKFTRGNNVKYLSEPIVTIRNERYVIPVRVEYRSKFGGVVHDQSSSGQTLYVEPES 228
Query: 283 AVPLNDELQQARASVTKAEEDVLL---ALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
V LN+EL+Q + + E+ +L AL L + ++L LD++NA+A Y+
Sbjct: 229 VVDLNNELRQNQVAEVHEEQRILQELSALVAPYTYTLKDNSRILG---HLDLLNAKAQYA 285
Query: 340 LSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAW 399
T P I S ++E I L +A HPL+ Q
Sbjct: 286 HQLKATEPQI--------SASNE--------------INLREARHPLIDQ---------- 313
Query: 400 KDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLV 459
+K+ + GE +T LV
Sbjct: 314 ------------KKVVSNDIRLGGEYET------------------------------LV 331
Query: 460 ITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519
ITGPNTGGKTI LKTVGL +MA+SG+ I ++E + V F+ +FADIGDEQS+ Q+LSTF
Sbjct: 332 ITGPNTGGKTITLKTVGLLQLMAQSGMFIPANENSTVRIFEEIFADIGDEQSIEQNLSTF 391
Query: 520 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579
S H+ I+ +SL L DE+GAGT+P EG AL +++L+ +G+ +++ TTH+
Sbjct: 392 SSHMDNTIRILGNLNERSLALFDELGAGTDPKEGAALAIAILDKVRSTGA-VSMTTTHYP 450
Query: 580 ELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 639
ELKT Y NA MEFD L+PTYK+L G+PG+S+A I++RLGL ++ AR L
Sbjct: 451 ELKTYGYERMGTINASMEFDVDTLQPTYKLLLGIPGQSNAFEISKRLGLDSDIISQARGL 510
Query: 640 YGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
S ++N +I ++ + + + +A L + H+ L++
Sbjct: 511 VDQDSQDLNNMIKDLTTRQKRAQKINQQAVELLKQAEEYHQTLVK 555
>gi|256846546|ref|ZP_05552003.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_36A2]
gi|256718315|gb|EEU31871.1| DNA mismatch repair protein MutS [Fusobacterium sp. 3_1_36A2]
Length = 778
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 146/420 (34%), Positives = 227/420 (54%), Gaps = 45/420 (10%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S ++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNREILSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ AR + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESIISKARAYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHE--ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQ 721
+ E AR L+ +I A Q ++K + I +S ++ +
Sbjct: 532 EMRERFAR-------------LQEEARIDRERAKQETLIIEKQKN--EIIKSAYEEAEKM 576
Query: 722 LCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSS 781
+ ++A +LV K ++ ++ KN ++L++ ++ VE
Sbjct: 577 MNEMRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE-------- 624
Query: 782 VVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
VVK IK K VGD V V S + ++K+ SKE VQ G +K + F +I
Sbjct: 625 VVKKIKTKVNFK------VGDRVFVKSINQFANILKINTSKESASVQAGILKLEVPFDEI 678
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 10/154 (6%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L + + F E ++ G
Sbjct: 133 INKTINPEKEIKDDASLDLRDIRLHKRTLNMNIKRKFEELFEEPSLSNAFQERIITERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
L +TE ++ + D+I + ++ LD++NA++ Y+
Sbjct: 250 LRITELLRNNKDDILTIGEKVMYLDILNAKSIYA 283
>gi|423072092|ref|ZP_17060854.1| MutS2 family protein [Desulfitobacterium hafniense DP7]
gi|361857227|gb|EHL09076.1| MutS2 family protein [Desulfitobacterium hafniense DP7]
Length = 789
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/413 (33%), Positives = 222/413 (53%), Gaps = 37/413 (8%)
Query: 435 QVSALELAHP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
++S ++ HP VP+ I + + +V+TGPNTGGKT+ LKT+GL MA+ GLHI
Sbjct: 300 EISLVQARHPLLTGKVVPLTIQLGTRFDTVVVTGPNTGGKTVALKTIGLLAAMAQCGLHI 359
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ ++V F +FADIGDEQS+ QSLSTFSGH+K I I+ ++ +SL+LLDE+GAGT
Sbjct: 360 PAESDSRVGVFTQIFADIGDEQSVEQSLSTFSGHMKNIVEIVEKADWRSLILLDEVGAGT 419
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG+AL M+++ E G+ + +ATTH+G LK Y+ ENA +EFD L+PTY+
Sbjct: 420 DPTEGSALAMAIIAELHERGARI-VATTHYGALKNFAYNTTRVENASVEFDSETLRPTYR 478
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
+L G+PG+S+A IA RLGLP V+ AR ++ ++I +E + +
Sbjct: 479 LLIGIPGKSNAFYIAGRLGLPEGVLDRARTFVTEREMQVADLIENLEDTQREI------- 531
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
+L K R R+ +E + K QK+ D + L+ K+ Q +
Sbjct: 532 --------DLEKRRAREERQAIEKESLGLKEKSQKLEDD---YQELMAKARDQATEIVRE 580
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
AR + +L+ L + K+Q + Q + K+ + + ++
Sbjct: 581 ARREAERLIDELK------LALKEERKDQQAIEKTRQ--GIRKLSNKVGDQDTPLR---- 628
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+P + +G +V+++ +KG V+K+ E+ VQ G +K + ++I
Sbjct: 629 TPHGVEPQEIKLGQMVYMTKLRQKGQVLKLPNDSGEVFVQAGVIKLNVPLSEI 681
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 117/251 (46%), Gaps = 15/251 (5%)
Query: 131 VRRASPLRP-------NEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIM-Q 182
VR A +RP L LLQ +TL+ + +K+ +P + IM Q
Sbjct: 67 VRGAREIRPLVERCLKGGTLTTDELLQIRDTLKAA--RVVKQGLQEGKAEVPHLKGIMEQ 124
Query: 183 LFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLF 242
+ + + + + I + + EDG + D AS L R + L+ ++ + +D +IRN + +
Sbjct: 125 VILPKGIEEEITRCITEDGQVADQASSVLADLRRSISRLQTRIRETLDGIIRNPAYQKIL 184
Query: 243 LE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ V+ R + + + SF+G++ S+SG IEP++ V L +EL++
Sbjct: 185 QDPIVTQRSERYVVPVKQEYRQSFQGIVHDQSASGATLYIEPMAVVNLGNELREVVLKEQ 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRS 358
+ + +LL L+ +++ + + I + ++D + A+A S +P + Q++
Sbjct: 245 REVQRILLLLSARVEGEAEAIADAHEALARVDFILAKARLSEEMNAGAPILTEKQEISLV 304
Query: 359 LTHEP-VTSKV 368
P +T KV
Sbjct: 305 QARHPLLTGKV 315
>gi|222629785|gb|EEE61917.1| hypothetical protein OsJ_16650 [Oryza sativa Japonica Group]
Length = 841
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 155/475 (32%), Positives = 243/475 (51%), Gaps = 52/475 (10%)
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIK-DSASPAL----KQSRGQVQMLERKLYQ 227
+ PL ++ L++ I +D S+ D AS L K+ R + MLE L
Sbjct: 108 YTPLLDIMQDCDFLTELVQRIEFCLDYTLSVVLDRASDKLATIRKERRKNIDMLESLLRD 167
Query: 228 LMDMLIRNENNESLFLEVSSIHGRLCIRTGADQ--LSFKGLLLSSS-SGIGSVIEPLSAV 284
+ + +S V+ R+C+ A L G++LSSS SG +EP A+
Sbjct: 168 TSTKIFQGGGIDSPV--VTKRRSRMCVGVKASHKHLVPGGIVLSSSGSGATYFMEPRDAI 225
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLD-EIEKMLNGIIQLDVVNARATYSLSFG 343
LN+ ++ + +AEE +L L D + +I ++ I++LD+ AR +Y+L
Sbjct: 226 RLNN-MEVKLSGDERAEELAILGLLTSSIADSEMKIRHLMGKILELDLACARGSYALWIN 284
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
P F +D L + E ++++ HPLLL+Q +++
Sbjct: 285 AVRP-AFTDRDSDTQL----------NPNSECSVFIEGIQHPLLLEQSLSMVKES----- 328
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
T + ++ L P+P+D+ + TR++VI+GP
Sbjct: 329 -----------------------TRVGKGQLSDEHLVSPMPIPLDMQVRNDTRIIVISGP 365
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT +KT+GLA +M+K+G+ + ++PWFD V ADIGD QSL SLSTFSGH+
Sbjct: 366 NTGGKTATMKTLGLASLMSKAGMFFPAKGTPRLPWFDQVLADIGDHQSLEHSLSTFSGHI 425
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
++ I+ + SLVL+DEIG+GT+P +G AL S+L+ A + L I TTH+ +L
Sbjct: 426 SRLRKIVQVVSKDSLVLIDEIGSGTDPSDGVALSTSILKYLASRLN-LAIVTTHYADLSR 484
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQ 638
LK +D FENA MEF L+PTY+ILWG G S+A++IA+ +G V+ A++
Sbjct: 485 LKAVDDRFENAAMEFCLETLQPTYQILWGSTGNSNALSIAKSIGFDQKVLARAQE 539
>gi|422871703|ref|ZP_16918196.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK1087]
gi|328945871|gb|EGG40022.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK1087]
Length = 777
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 216/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFRPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLAEVIVSHAQEQTDTDS-DVNRII---ERLEEQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S ++LH K ++ + Q + P T S K +K
Sbjct: 580 E--------------SILKNLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 622 QA---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 43.5 bits (101), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 9/182 (4%)
Query: 182 QLFVNRSLIKSI---MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENN 238
+LF N ++ + +Q V++ G I+ AS +L + R ++Q E ++ +++ +++N+
Sbjct: 119 RLFENLAVFPKLQGSLQAVNDGGFIESFASESLSRIRRKIQENENQVREILQEILKNKGE 178
Query: 239 ESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQAR 294
V+S +GR + T +++S G++ S+SG IEP + V LN+E+ +R
Sbjct: 179 MLADQVVASRNGRNVLPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSR 236
Query: 295 ASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQD 354
A + +L L++ + EI I LD+V A+ + G P++ QD
Sbjct: 237 ADERYEIQRILQELSDLFRPHAAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQD 296
Query: 355 MK 356
++
Sbjct: 297 IQ 298
>gi|89893029|ref|YP_516516.1| hypothetical protein DSY0283 [Desulfitobacterium hafniense Y51]
gi|219666299|ref|YP_002456734.1| MutS2 family protein [Desulfitobacterium hafniense DCB-2]
gi|89332477|dbj|BAE82072.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219536559|gb|ACL18298.1| MutS2 family protein [Desulfitobacterium hafniense DCB-2]
Length = 789
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/413 (33%), Positives = 222/413 (53%), Gaps = 37/413 (8%)
Query: 435 QVSALELAHP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
++S ++ HP VP+ I + + +V+TGPNTGGKT+ LKT+GL MA+ GLHI
Sbjct: 300 EISLVQARHPLLTGKVVPLTIQLGTRFDTVVVTGPNTGGKTVALKTIGLLAAMAQCGLHI 359
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ ++V F +FADIGDEQS+ QSLSTFSGH+K I I+ ++ +SL+LLDE+GAGT
Sbjct: 360 PAESDSRVGVFTQIFADIGDEQSVEQSLSTFSGHMKNIVEIVEKADWRSLILLDEVGAGT 419
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG+AL M+++ E G+ + +ATTH+G LK Y+ ENA +EFD L+PTY+
Sbjct: 420 DPTEGSALAMAIIAELHERGARI-VATTHYGALKNFAYNTTRVENASVEFDSETLRPTYR 478
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
+L G+PG+S+A IA RLGLP V+ AR ++ ++I +E + +
Sbjct: 479 LLIGIPGKSNAFYIAGRLGLPEGVLDRARTFVTEREMQVADLIENLEDTQREI------- 531
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
+L K R R+ +E + K QK+ D + L+ K+ Q +
Sbjct: 532 --------DLEKRRAREERQAIEKESLGLKEKSQKLEDD---YQELMAKARDQATEIVRE 580
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
AR + +L+ L + K+Q + Q + K+ + + ++
Sbjct: 581 ARREAERLIDELK------LALKEERKDQQAIEKTRQ--GIRKLSNKVGDQDTPLR---- 628
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+P + +G +V+++ +KG V+K+ E+ VQ G +K + ++I
Sbjct: 629 TPHGVEPQEIKLGQMVYMTKLRQKGQVLKLPNDSGEVFVQAGVIKLNVPLSEI 681
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 117/251 (46%), Gaps = 15/251 (5%)
Query: 131 VRRASPLRP-------NEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIM-Q 182
VR A +RP L LLQ +TL+ + +K+ +P + IM Q
Sbjct: 67 VRGAREIRPLVERCLKGGTLTTDELLQIRDTLKAA--RIVKQGLQEGKAEVPHLKGIMEQ 124
Query: 183 LFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLF 242
+ + + + + I + + EDG + D AS L R + L+ ++ + +D +IRN + +
Sbjct: 125 VILPKGIEEEITRCITEDGQVADQASSVLADLRRSISRLQTRIRETLDGIIRNPAYQKIL 184
Query: 243 LE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ V+ R + + + SF+G++ S+SG IEP++ V L +EL++
Sbjct: 185 QDPIVTQRSERYVVPVKQEYRQSFQGIVHDQSASGATLYIEPMAVVNLGNELREVVLKEQ 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRS 358
+ + +LL L+ +++ + + I + ++D + A+A S +P + Q++
Sbjct: 245 REVQRILLLLSARVEGEAEAIADAHEALARVDFILAKARLSEEMNAGAPILTEKQEISLV 304
Query: 359 LTHEP-VTSKV 368
P +T KV
Sbjct: 305 QARHPLLTGKV 315
>gi|422864049|ref|ZP_16910678.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK408]
gi|327472872|gb|EGF18299.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK408]
Length = 777
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 216/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLSELIVSHAQEQTDTDS-DVNRII---ERLEEQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S ++LH K ++ + Q + P T S K +K
Sbjct: 580 E--------------SILKNLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 622 QA---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLC 253
+Q V++ G I+ AS +L + R ++Q E ++ +++ +++N+ V+S +GR
Sbjct: 134 LQAVNDGGFIESFASESLSRIRRKIQENENQVREILQEILKNKGEMLADQVVASRNGRNV 193
Query: 254 I---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ T +++S G++ S+SG IEP + V LN+E+ +RA + +L L+
Sbjct: 194 LPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSRADERYEIQRILQELS 251
Query: 310 EKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+ + EI I LD+V A+ + G P++ QD++
Sbjct: 252 DLFRPHAAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQDIQ 298
>gi|392407254|ref|YP_006443862.1| MutS2 family protein [Anaerobaculum mobile DSM 13181]
gi|390620390|gb|AFM21537.1| MutS2 family protein [Anaerobaculum mobile DSM 13181]
Length = 790
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 205/693 (29%), Positives = 324/693 (46%), Gaps = 118/693 (17%)
Query: 148 LLQFSETLQLSLRAAIKEDADLYIR--FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKD 205
LL F L L++R IKE + R + L +M Q +K+ M VVDEDG + D
Sbjct: 93 LLPFKCMLGLAVR--IKELSGELAREGYGKLGEMARQFADFGDEVKA-MSVVDEDGRLYD 149
Query: 206 SASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLS 262
SAS L + R ++ + +R+ + +I +++ S + ++ +GR + D S
Sbjct: 150 SASVKLAEIRNELDVAKRQARSIGQKIISDQSLSSKLQDQVIAMRNGRYVLLVKKDLAPS 209
Query: 263 FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEK 321
F G+ + SSSG +EP + V +N+++ + E + LTE + I K
Sbjct: 210 FPGIFVDYSSSGNSVYMEPHALVTMNNKIAMLLEDERREERRICQKLTEMLLSRERAILK 269
Query: 322 MLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPK 381
+ I Q+D++ + + + + + LP+ E + + YL
Sbjct: 270 AQDLIGQIDLM-----WGIYYFLQANDWTLPE-----------------MEEKSSFYLNN 307
Query: 382 AYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALEL 441
A+HPL L P
Sbjct: 308 AHHPL------------------------------------------LEPK--------- 316
Query: 442 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS 501
VPID+ R + LVITGPNTGGKT+ LKTVGL V +A GL I + E +++ F S
Sbjct: 317 --AVPIDVHCGRNFKALVITGPNTGGKTVALKTVGLCVYLAWCGLPIPAREGSRIGQFSS 374
Query: 502 VFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 561
+ ADIGDEQS+ Q+LSTFSGH+K+I ++++Q+ +SL L+DE+GAGT+P EG ALG+++L
Sbjct: 375 LEADIGDEQSIEQNLSTFSGHVKRIIDMLAQADDRSLFLIDELGAGTDPEEGAALGIAIL 434
Query: 562 EAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAIN 621
E F + GSL+ +ATTHH +K E A ++FD L+P YK+L GVPG+S+A+
Sbjct: 435 ETFLKKGSLV-LATTHHNSIKRYALLTQNVETASVDFDPETLQPKYKLLLGVPGKSNALL 493
Query: 622 IAERLGLPGIVVQNA-RQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA+RLG+P V++ A R+L G+ ++ E ++E R K LE + N
Sbjct: 494 IAKRLGMPDEVLEIAKRELKGSDTS--MEDLLERLRAKLSALEEKEKELA------NETA 545
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
NL +R++ + R+ + +++A A+ +V K AQ+ + S H A
Sbjct: 546 NLKAAKRELERQLSGIEERRERILAEAERRAKKIV-KEAQESAKLLLKELSKTHNLADAH 604
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
R A K+ +D +E I+ + +P V
Sbjct: 605 RTFAKMREQTDKI---------------LDDIEREEATR------IESKSSIAEGRIPRV 643
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
GD V + G V V+ E+ +Q G +K
Sbjct: 644 GDKVKILGTNATGIVESVD--NEKATIQSGPIK 674
>gi|422824868|ref|ZP_16873053.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK405]
gi|422856979|ref|ZP_16903633.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK1]
gi|422864470|ref|ZP_16911095.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK1058]
gi|324992148|gb|EGC24070.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK405]
gi|327459465|gb|EGF05811.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK1]
gi|327490664|gb|EGF22445.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK1058]
Length = 777
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 216/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLSEVIVGHAQEQTDTDS-DVNRII---ERLEEQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQKIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S ++LH K ++ + Q + P T S K +K
Sbjct: 580 E--------------SILKNLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 622 QA---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 42.7 bits (99), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLC 253
+Q V++ G I+ AS +L + R ++Q E ++ +++ +++N+ V+S +GR
Sbjct: 134 LQAVNDGGFIESFASESLSRIRRKIQENENQVREILQEILKNKGEMLADQVVASRNGRNV 193
Query: 254 I---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ T +++S G++ S+SG IEP + V LN+E+ +RA + +L L+
Sbjct: 194 LPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSRADERYEIQRILQELS 251
Query: 310 EKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+ + EI I LD+V A+ + G P++ QD++
Sbjct: 252 DLFRPHAAEIANNAWIIGHLDLVRAKIRFMQETGAVVPDLSEEQDIQ 298
>gi|340754472|ref|ZP_08691225.1| MutS2 protein [Fusobacterium sp. 2_1_31]
gi|229423979|gb|EEO39026.1| MutS2 protein [Fusobacterium sp. 2_1_31]
Length = 778
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 226/418 (54%), Gaps = 41/418 (9%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S +V +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNREVLSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I++ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILAGVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEKKA-KSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ AR + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESIISKARAYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ E L L + + ++E ++ I ++ ++ + +
Sbjct: 532 EMRERFARLEEEARLDRERAKQETLVIEKQKNE-------------IIKAAYEEAEKMMN 578
Query: 724 PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVV 783
++A +LV K ++ ++ KN ++L++ ++ VE VV
Sbjct: 579 EMRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VV 626
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K IK K VGD V V S + ++K+ SKE VQ G +K + F +I
Sbjct: 627 KKIKTKVNFK------VGDRVFVKSINQFANILKINTSKESASVQAGILKLEVPFEEI 678
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 10/164 (6%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L + + F E ++ G
Sbjct: 133 INKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFDEPSLANAFQERIITERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVTPVKFD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L + E ++ + D+I + + + LD++NA++ Y++ P +
Sbjct: 250 LRIAELLRNNRDDILAIGDKALYLDILNAKSIYAVDNKCEIPTV 293
>gi|256965209|ref|ZP_05569380.1| MutS 2 protein [Enterococcus faecalis HIP11704]
gi|307273312|ref|ZP_07554558.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0855]
gi|256955705|gb|EEU72337.1| MutS 2 protein [Enterococcus faecalis HIP11704]
gi|306510297|gb|EFM79321.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0855]
Length = 788
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 222/389 (57%), Gaps = 28/389 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFA
Sbjct: 317 VANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 GAKGAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L
Sbjct: 496 RLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKE 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ E +R +++QK K A ++ A + + ++++ +
Sbjct: 556 AYQVFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLES 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
Q + G +H L +T + ++ H T + K+ K + K + GD V
Sbjct: 601 GQ-----QGGVKEHQLID--AKTQLSRLHHEET---KLAKN-KVLKKAKEQKKLKAGDEV 649
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
V+++G++GT++K + K + VQ+G +K
Sbjct: 650 IVNTYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|422736468|ref|ZP_16792731.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX1341]
gi|315166623|gb|EFU10640.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX1341]
Length = 788
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 222/389 (57%), Gaps = 28/389 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFA
Sbjct: 317 VANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 GAKGAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L
Sbjct: 496 RLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKE 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ E +R +++QK K A ++ A + + ++++ +
Sbjct: 556 AYQVFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLES 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
Q + G +H L +T + ++ H T + K+ K + K + GD V
Sbjct: 601 GQ-----QGGVKEHQLID--AKTQLSRLHHEET---KLAKN-KVLKKAKEQKKLKAGDEV 649
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
V+++G++GT++K + K + VQ+G +K
Sbjct: 650 IVNTYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|302874999|ref|YP_003843632.1| MutS2 family protein [Clostridium cellulovorans 743B]
gi|302577856|gb|ADL51868.1| MutS2 family protein [Clostridium cellulovorans 743B]
Length = 784
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 186/608 (30%), Positives = 289/608 (47%), Gaps = 103/608 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM-QKHGSC 112
LRVLE++K+ V + T+ ++ + L + Y+ L L ET A+ + K G+
Sbjct: 6 LRVLEFNKVKDKVKGYTNTTAAKD-LIESLEPYDNIYE-VLEHLKETEEALNLLMKKGTA 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEA-LAVVALLQFSETLQLSLR-AAIKEDADLY 170
D ++R A L L V L++ S ++++ R + +
Sbjct: 64 PFD-----------GAYDIRDAINLASKGGTLMAVQLVRISNVMRIARRFKGYIDTKESD 112
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I L + + ++L +I + + I D AS L R ++ + + +
Sbjct: 113 ISSNVLEDICQGIVPVKNLEDAIFNAIISEDEISDKASTTLYNIRRSLKEKNNSVKEKVS 172
Query: 231 MLIRNENN---ESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAV 284
++R +N E+ + +I G R + A+ + S +GL+ SS+G IEP++ V
Sbjct: 173 SMVRQYSNVLQENFY----TIRGDRYVLPVKAEHKGSVQGLVHDQSSTGSTLFIEPIALV 228
Query: 285 PLNDELQQARASVTKAEED-VLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
LN+E+++ KAE D +L L+ K+ D++ IE + +LD + A+A Y+ G
Sbjct: 229 NLNNEIKELLLK-EKAEIDRILQELSNKVYDDINVIENNSLIVTELDFIFAKAKYANDLG 287
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
T P I ++ + L +A HPLL
Sbjct: 288 CTIPKI----------------------NKDGNVDLIEARHPLL---------------- 309
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
RK+ VP DI + R+ LVITGP
Sbjct: 310 -------DRKIV-----------------------------VPSDIKLGREFTSLVITGP 333
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKT+ LKT+GL +MA SGL I + E + V +F +FADIGDEQS+ QSLSTFS H+
Sbjct: 334 NTGGKTVTLKTLGLIELMALSGLLIPARENSTVGFFKEIFADIGDEQSIEQSLSTFSSHM 393
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I +II + SL L DE+GAGT+P EG AL +S+LE + L +ATTH+ ELK
Sbjct: 394 TNIVSIIENADEHSLALFDELGAGTDPTEGAALAISILENLRMNKVKL-VATTHYSELKG 452
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
+ ENA +EFD LKPTY++L G+PG+S+A I+ RLGLP ++ NA++
Sbjct: 453 YALKTENVENASVEFDVETLKPTYRLLIGIPGKSNAFEISRRLGLPDYIITNAKENIARE 512
Query: 644 SAEINEVI 651
+ E ++I
Sbjct: 513 TLEFEDLI 520
>gi|255658182|ref|ZP_05403591.1| DNA mismatch repair protein MutS [Mitsuokella multacida DSM 20544]
gi|260849490|gb|EEX69497.1| DNA mismatch repair protein MutS [Mitsuokella multacida DSM 20544]
Length = 794
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 144/393 (36%), Positives = 216/393 (54%), Gaps = 40/393 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPIDI I R+L+ITGPNTGGKT+ +KT+G V++A+SG ++ ++ + + +++A
Sbjct: 314 VPIDIRIGEDYRMLLITGPNTGGKTVSMKTLGTMVLLAQSGCYLPTAPDPVIAVYPNIYA 373
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I+ + LVLLDE+GAGT+P EG AL M++LE
Sbjct: 374 DIGDEQSIEQSLSTFSAHMTHIVRILQEVEEDDLVLLDELGAGTDPEEGAALAMAILEKL 433
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ + TIATTH+ ELKT YS + ENAC+EFD L+PTY++L G+PG S+A I+
Sbjct: 434 LQL-RVTTIATTHYSELKTFAYSREGIENACVEFDVKTLRPTYRLLIGMPGASNAFAISR 492
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRN-----LH 679
RLGL ++ A+QL A A+ VI E+E K ++E R+ +L R L
Sbjct: 493 RLGLSESLILRAQQLVKADHAQFEHVINELENEKM-----MYEQRNADILERQQRVTELE 547
Query: 680 KNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQ 739
+ RT+ + L + RK ++ S AA+ R +S + Q KR QQ
Sbjct: 548 AKVARTKEE-LSKKKGELIRKAREQS--AAMVRRTRRESEAIIKELKEQFDDQGIKRRQQ 604
Query: 740 LRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPN 799
A L+ F+++ + + +K IK
Sbjct: 605 AIQDARAKLN------------EAFEKSRPGIMAQKGVGKAVSLKSIKP----------- 641
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNM 832
GD+V+V +KGTV++V+ +E+ VQ+G++
Sbjct: 642 -GDIVYVKKLDQKGTVLEVQ--GKELTVQIGSL 671
>gi|150389498|ref|YP_001319547.1| MutS2 family protein [Alkaliphilus metalliredigens QYMF]
gi|229486330|sp|A6TNX0.1|MUTS2_ALKMQ RecName: Full=MutS2 protein
gi|149949360|gb|ABR47888.1| MutS2 family protein [Alkaliphilus metalliredigens QYMF]
Length = 789
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 147/418 (35%), Positives = 217/418 (51%), Gaps = 70/418 (16%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +++I + LVITGPNTGGKT+ LKT+GL MMA+SGLH+ + ++ FD +FA
Sbjct: 317 VPTNLWIGETFQTLVITGPNTGGKTVTLKTLGLLSMMAQSGLHVPADYGTRLAIFDQIFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I NI+ + TS SLVL DE+GAGT+P EG ALGM++L
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVNIVEEVTSNSLVLFDELGAGTDPTEGAALGMAILNHL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
E ++ T+ATTH+ ELK +N+ ENA +EFD L PTY++L GVPG+S+A I++
Sbjct: 437 REM-NVTTVATTHYSELKQYALTNEGVENASVEFDVATLSPTYRLLIGVPGKSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
+LGLP +VQ A+ RF +Q + HF L +N+ KN
Sbjct: 496 KLGLPDGLVQRAK------------------RFLSQ------DTIHFEDLLQNIEKN--- 528
Query: 685 TRRKILEHCASQRFR-KVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPS 743
R +E ++R R + +K ++ + + L +R Q LR +
Sbjct: 529 RRESEIERQEAKRIRLEAEKFAEGY-----------------EDRKQRLEAQRDQILRDA 571
Query: 744 ASQSLHCTKVGK--NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPN-- 799
++ K K ++H++ + K E A + ++D K K +L +
Sbjct: 572 KKEAYRLVKEAKMDSEHIIKGLREM----KFELEAKEMNKKMEDAKNQLTGKMNDLSDHH 627
Query: 800 ----------------VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V + S + G V+ K E+ VQ G MK M +++
Sbjct: 628 QQILNKKNKKPPKNLKPGDAVRILSLNQVGHVLNEVDPKGEVQVQAGIMKVNMHISNL 685
Score = 42.7 bits (99), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 136/303 (44%), Gaps = 20/303 (6%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA--IEMQKH 109
+S+RVLE+ K+ + +++ +E +L I Q++ + +L ET+ A I +Q+
Sbjct: 4 KSIRVLEYGKMIDRLEERCLSAMAKEKA-RELRPI-QSFGEITQLQSETSEAQSILIQR- 60
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
++ L G+ +K +R+ S L P E L V L+ + +L++ KE D
Sbjct: 61 --GNIPLGGI--HDIKQYLRKTEIGSYLDPKELLLVKDTLRTAR----NLKSFFKEGDD- 111
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ ++ +I L R++ I + D I D AS LK R Q+ + +
Sbjct: 112 QTKHPIVSGLIQGLQSFRAIEDRIEICIVSDTEISDHASSTLKNIRRQISSKNDAVRNKL 171
Query: 230 DMLIRNENNESLFLEVSSI---HGRLCIRTGADQL-SFKGLLLS-SSSGIGSVIEPLSAV 284
+ +I N + +L+ + I R + + + GL+ SSSG +EP++ V
Sbjct: 172 NGII-NSSTTQKYLQDAIITMRQDRYVVPVKQEHRGNVPGLIHDQSSSGATLFVEPMAVV 230
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+EL++ + E +L+ + E + E+ + +D V A+ SL G
Sbjct: 231 QLNNELRELKIKEHIEIERILMEIAEMIAQYATEMRNNQIILTAIDFVFAKGKLSLEMKG 290
Query: 345 TSP 347
P
Sbjct: 291 VEP 293
>gi|25011803|ref|NP_736198.1| MutS2 family protein [Streptococcus agalactiae NEM316]
gi|81744484|sp|Q8E3J5.1|MUTS2_STRA3 RecName: Full=MutS2 protein
gi|24413344|emb|CAD47423.1| Unknown [Streptococcus agalactiae NEM316]
Length = 779
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 218/379 (57%), Gaps = 41/379 (10%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ + +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 307 LSNPVANDLHFDQDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S ++ T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-NIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSR-NLH 679
IA RLGL +V+ A+Q+ + S ++N +I E+ + Q LE H + + NL
Sbjct: 486 EIASRLGLAPFIVKQAKQMTDSDS-DVNRII---EQLEAQTLETRRRLDHIKEIEQENLK 541
Query: 680 KNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR--- 736
N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 542 FN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKLND 588
Query: 737 AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE 796
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 589 KSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKAAR 629
Query: 797 LPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 630 APRIGDDIIVTSYGQRGTL 648
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E L + +LQ S + I +DL + F L
Sbjct: 66 VSLSSISESLKRLELSADLNIQELLVIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 118
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 119 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDML-- 173
Query: 235 NENNESLFLE--VSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+ L E ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 174 -KEKAELLSENLIASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 231 EITQLRADERHEESRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPE 290
Query: 349 I 349
I
Sbjct: 291 I 291
>gi|77413675|ref|ZP_00789859.1| MutS2 family protein [Streptococcus agalactiae 515]
gi|77160275|gb|EAO71402.1| MutS2 family protein [Streptococcus agalactiae 515]
Length = 782
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 218/379 (57%), Gaps = 41/379 (10%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ + +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 310 LSNPVANDLHFDQDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 369
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 370 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 429
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S ++ T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 430 LEHLRLS-NIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 488
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSR-NLH 679
IA RLGL +V+ A+Q+ + S ++N +I E+ + Q LE H + + NL
Sbjct: 489 EIASRLGLAPFIVKQAKQMTDSDS-DVNRII---EQLEAQTLETRRRLDHIKEIEQENLK 544
Query: 680 KNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR--- 736
N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 545 FN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKLND 591
Query: 737 AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE 796
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 592 KSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKAAR 632
Query: 797 LPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 633 APRIGDDIIVTSYGQRGTL 651
Score = 43.5 bits (101), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E L + +LQ S + I +DL + F L
Sbjct: 69 VSLSSISESLKRLELSADLNIQELLVIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 121
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 122 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 178
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 179 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 233
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 234 EITQLRADERHEESRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPE 293
Query: 349 I 349
I
Sbjct: 294 I 294
>gi|256618984|ref|ZP_05475830.1| MutS 2 protein [Enterococcus faecalis ATCC 4200]
gi|256598511|gb|EEU17687.1| MutS 2 protein [Enterococcus faecalis ATCC 4200]
Length = 788
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 221/386 (57%), Gaps = 28/386 (7%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFADIG
Sbjct: 320 DIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 380 DEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSLGAK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++RLG
Sbjct: 440 GAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISKRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
L +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L +
Sbjct: 499 LDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKEAYQ 558
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
E +R +++QK K A ++ A + + ++++ + Q
Sbjct: 559 VFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLESGQ- 602
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVS 807
+ G +H L +T + ++ H T + K+ K + K + GD V V+
Sbjct: 603 ----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEVIVN 652
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMK 833
++G++GT++K + K + VQ+G +K
Sbjct: 653 TYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDTLVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|77412144|ref|ZP_00788467.1| MutS2 family protein [Streptococcus agalactiae CJB111]
gi|77161804|gb|EAO72792.1| MutS2 family protein [Streptococcus agalactiae CJB111]
Length = 779
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 220/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ + +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 307 LSNPVANDLHFDQDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S ++ T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-NIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 486 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 540 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 586
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 587 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 627
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 628 ARAPRIGDDIIVTSYGQRGTL 648
Score = 45.8 bits (107), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 66 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 118
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 119 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 175
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 176 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 231 EITQLRADERHEESRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMTDNKATIPE 290
Query: 349 I 349
I
Sbjct: 291 I 291
>gi|410595086|ref|YP_006951813.1| MutS2 protein [Streptococcus agalactiae SA20-06]
gi|410518725|gb|AFV72869.1| MutS2 protein [Streptococcus agalactiae SA20-06]
Length = 779
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 220/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ + +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 307 LSNPVANDLHFDQDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S ++ T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-NIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 486 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 540 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 586
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 587 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 627
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 628 ARAPRIGDDIIVTSYGQRGTL 648
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 116/241 (48%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 66 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 118
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 119 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDML-- 173
Query: 235 NENNESLFLE--VSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+ LF E ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 174 -KEKAELFSENLIASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + + LD V A+ + T P
Sbjct: 231 EITQLRADERHEESRILHAFSDLLRPHVATIRNNVWILGHLDFVRAKYLFMTDNKATIPE 290
Query: 349 I 349
I
Sbjct: 291 I 291
>gi|76798411|ref|ZP_00780652.1| MutS2 family protein [Streptococcus agalactiae 18RS21]
gi|77405981|ref|ZP_00783060.1| MutS2 family protein [Streptococcus agalactiae H36B]
gi|77409454|ref|ZP_00786148.1| MutS2 family protein [Streptococcus agalactiae COH1]
gi|76586243|gb|EAO62760.1| MutS2 family protein [Streptococcus agalactiae 18RS21]
gi|77171946|gb|EAO75121.1| MutS2 family protein [Streptococcus agalactiae COH1]
gi|77175433|gb|EAO78223.1| MutS2 family protein [Streptococcus agalactiae H36B]
Length = 782
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 220/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ + +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 310 LSNPVANDLHFDQDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 369
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 370 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 429
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S ++ T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 430 LEHLRLS-NIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 488
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 489 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 542
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 543 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 589
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 590 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 630
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 631 ARAPRIGDDIIVTSYGQRGTL 651
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 69 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 121
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 122 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 178
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 179 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 233
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 234 EITQLRADERHEESRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPE 293
Query: 349 I 349
I
Sbjct: 294 I 294
>gi|22537858|ref|NP_688709.1| MutS2 family protein [Streptococcus agalactiae 2603V/R]
gi|76787272|ref|YP_330327.1| MutS2 family protein [Streptococcus agalactiae A909]
gi|406710098|ref|YP_006764824.1| MutS2 family protein [Streptococcus agalactiae GD201008-001]
gi|421147964|ref|ZP_15607636.1| MutS2 family protein [Streptococcus agalactiae GB00112]
gi|424048838|ref|ZP_17786389.1| MutS2 family protein [Streptococcus agalactiae ZQ0910]
gi|81744331|sp|Q8DXX6.1|MUTS2_STRA5 RecName: Full=MutS2 protein
gi|123601324|sp|Q3JZH6.1|MUTS2_STRA1 RecName: Full=MutS2 protein
gi|22534753|gb|AAN00582.1|AE014269_26 MutS2 family protein [Streptococcus agalactiae 2603V/R]
gi|76562329|gb|ABA44913.1| MutS2 family protein [Streptococcus agalactiae A909]
gi|389649607|gb|EIM71083.1| MutS2 family protein [Streptococcus agalactiae ZQ0910]
gi|401685302|gb|EJS81310.1| MutS2 family protein [Streptococcus agalactiae GB00112]
gi|406650983|gb|AFS46384.1| MutS2 family protein [Streptococcus agalactiae GD201008-001]
Length = 779
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 220/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ + +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 307 LSNPVANDLHFDQDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S ++ T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-NIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 486 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 540 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 586
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 587 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 627
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 628 ARAPRIGDDIIVTSYGQRGTL 648
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 66 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 118
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 119 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 175
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 176 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 231 EITQLRADERHEESRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPE 290
Query: 349 I 349
I
Sbjct: 291 I 291
>gi|256962011|ref|ZP_05566182.1| MutS 2 protein [Enterococcus faecalis Merz96]
gi|257089797|ref|ZP_05584158.1| MutS 2 protein [Enterococcus faecalis CH188]
gi|293382380|ref|ZP_06628319.1| DNA mismatch repair protein MutS [Enterococcus faecalis R712]
gi|293389358|ref|ZP_06633816.1| DNA mismatch repair protein MutS [Enterococcus faecalis S613]
gi|312904147|ref|ZP_07763315.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0635]
gi|312907378|ref|ZP_07766369.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis DAPTO 512]
gi|312909995|ref|ZP_07768842.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis DAPTO 516]
gi|422689484|ref|ZP_16747596.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0630]
gi|256952507|gb|EEU69139.1| MutS 2 protein [Enterococcus faecalis Merz96]
gi|256998609|gb|EEU85129.1| MutS 2 protein [Enterococcus faecalis CH188]
gi|291080325|gb|EFE17689.1| DNA mismatch repair protein MutS [Enterococcus faecalis R712]
gi|291081245|gb|EFE18208.1| DNA mismatch repair protein MutS [Enterococcus faecalis S613]
gi|310626406|gb|EFQ09689.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis DAPTO 512]
gi|310632623|gb|EFQ15906.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0635]
gi|311289268|gb|EFQ67824.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis DAPTO 516]
gi|315577532|gb|EFU89723.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0630]
Length = 788
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 221/386 (57%), Gaps = 28/386 (7%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFADIG
Sbjct: 320 DIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 380 DEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSLGAK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++RLG
Sbjct: 440 GAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISKRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
L +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L +
Sbjct: 499 LDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKEAYQ 558
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
E +R +++QK K A ++ A + + ++++ + Q
Sbjct: 559 VFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLESGQ- 602
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVS 807
+ G +H L +T + ++ H T + K+ K + K + GD V V+
Sbjct: 603 ----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEVIVN 652
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMK 833
++G++GT++K + K + VQ+G +K
Sbjct: 653 TYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|386728823|ref|YP_006195206.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
71193]
gi|387602416|ref|YP_005733937.1| MutS2 protein [Staphylococcus aureus subsp. aureus ST398]
gi|404478481|ref|YP_006709911.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
08BA02176]
gi|418309746|ref|ZP_12921297.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21331]
gi|418978614|ref|ZP_13526414.1| MutS [Staphylococcus aureus subsp. aureus DR10]
gi|283470354|emb|CAQ49565.1| MutS2 protein [Staphylococcus aureus subsp. aureus ST398]
gi|365237869|gb|EHM78708.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21331]
gi|379993438|gb|EIA14884.1| MutS [Staphylococcus aureus subsp. aureus DR10]
gi|384230116|gb|AFH69363.1| MutS [Staphylococcus aureus subsp. aureus 71193]
gi|404439970|gb|AFR73163.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
08BA02176]
Length = 782
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 219/386 (56%), Gaps = 38/386 (9%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKRADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQK--ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGK 755
F+ +K I DA K+ Q++ + +A ++ K +QLR + ++
Sbjct: 562 FQNYEKSLIEDAK-------EKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELID 613
Query: 756 NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ L +++ K IKQ+ + ++ + GD V V S+G+KG V
Sbjct: 614 KKKRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEV 656
Query: 816 IKVEPSKEEIVVQVGNMKWIMKFTDI 841
+++ + EE +VQ+G +K + D+
Sbjct: 657 LEI-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|421531840|ref|ZP_15978217.1| MutS2 family protein [Streptococcus agalactiae STIR-CD-17]
gi|403642941|gb|EJZ03741.1| MutS2 family protein [Streptococcus agalactiae STIR-CD-17]
Length = 779
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 220/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ + +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 307 LSNPVANDLHFDQDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S ++ T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-NIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 486 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 540 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 586
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 587 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 627
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 628 ARAPRIGDDIIVTSYGQRGTL 648
Score = 46.2 bits (108), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 66 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 118
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 119 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDML-- 173
Query: 235 NENNESLFLE--VSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+ L E ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 174 -KEKAELLSENLIASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 231 EITQLRADERHEERRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMTDNKATIPE 290
Query: 349 I 349
I
Sbjct: 291 I 291
>gi|417006101|ref|ZP_11944671.1| MutS2 family protein [Streptococcus agalactiae FSL S3-026]
gi|341576282|gb|EGS26693.1| MutS2 family protein [Streptococcus agalactiae FSL S3-026]
Length = 779
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 220/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ + +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 307 LSNPVANDLHFDQDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S ++ T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-NIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 486 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 540 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 586
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 587 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 627
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 628 ARAPRIGDDIIVTSYGQRGTL 648
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 66 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQFLD 118
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 119 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 175
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 176 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 231 EITQLRADERHEESRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPE 290
Query: 349 I 349
I
Sbjct: 291 I 291
>gi|422697088|ref|ZP_16755036.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX1346]
gi|315174484|gb|EFU18501.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX1346]
Length = 788
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 221/386 (57%), Gaps = 28/386 (7%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFADIG
Sbjct: 320 DIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 380 DEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSLGAK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++RLG
Sbjct: 440 GAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISKRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
L +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L +
Sbjct: 499 LDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKEAYQ 558
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
E +R +++QK K A ++ A + + ++++ + Q
Sbjct: 559 VFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLESGQ- 602
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVS 807
+ G +H L +T + ++ H T + K+ K + K + GD V V+
Sbjct: 603 ----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEVIVN 652
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMK 833
++G++GT++K + K + VQ+G +K
Sbjct: 653 TYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQGIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|294784135|ref|ZP_06749436.1| DNA mismatch repair protein mutS [Fusobacterium sp. 3_1_27]
gi|294488205|gb|EFG35550.1| DNA mismatch repair protein mutS [Fusobacterium sp. 3_1_27]
Length = 778
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 145/417 (34%), Positives = 226/417 (54%), Gaps = 45/417 (10%)
Query: 435 QVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL 486
++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA SG+
Sbjct: 297 EILSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMALSGI 356
Query: 487 HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGA 546
I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE+G+
Sbjct: 357 PIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDELGS 416
Query: 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPT 606
GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L PT
Sbjct: 417 GTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTLSPT 475
Query: 607 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVH 666
Y++L G+PG S+A+ IA+R+GLP ++ AR + ++ E +IE + K+Q L+ +
Sbjct: 476 YRLLVGIPGESNALTIAQRMGLPESIISKARAYISEDNKKV-EKMIENIKTKSQELDEMR 534
Query: 667 E--ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCP 724
E AR L+ +I A Q ++K + I +S ++ + +
Sbjct: 535 ERFAR-------------LQEEARIDRERAKQETLIIEKQKN--EIIKSAYEEAEKMMNE 579
Query: 725 SASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVK 784
++A +LV K ++ ++ KN ++L++ ++ VE VVK
Sbjct: 580 MRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VVK 627
Query: 785 DIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
IK K VGD V V S + ++K+ SKE VQ G +K + F +I
Sbjct: 628 KIKTKVNFK------VGDRVFVKSINQFANILKINTSKESTSVQAGILKLEVPFDEI 678
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 10/154 (6%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L + + F E ++ G
Sbjct: 133 INKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFEEPSLSNAFQEKIITERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
L + E ++ + D+I + ++ LD++NA++ Y+
Sbjct: 250 LRIAELLRNNKDDILTIGEKVMYLDILNAKSIYA 283
>gi|257416014|ref|ZP_05593008.1| MutS 2 protein [Enterococcus faecalis ARO1/DG]
gi|300860265|ref|ZP_07106352.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TUSoD Ef11]
gi|384513156|ref|YP_005708249.1| DNA mismatch repair protein MutS [Enterococcus faecalis OG1RF]
gi|422733668|ref|ZP_16789970.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0645]
gi|422738643|ref|ZP_16793838.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX2141]
gi|428766910|ref|YP_007153021.1| DNA mismatch repair protein, mutS2 family [Enterococcus faecalis
str. Symbioflor 1]
gi|430360426|ref|ZP_19426273.1| MutS 2 protein [Enterococcus faecalis OG1X]
gi|430368259|ref|ZP_19428131.1| MutS 2 protein [Enterococcus faecalis M7]
gi|257157842|gb|EEU87802.1| MutS 2 protein [Enterococcus faecalis ARO1/DG]
gi|295112922|emb|CBL31559.1| MutS2 family protein [Enterococcus sp. 7L76]
gi|300849304|gb|EFK77054.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TUSoD Ef11]
gi|315145717|gb|EFT89733.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX2141]
gi|315160196|gb|EFU04213.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0645]
gi|327535045|gb|AEA93879.1| DNA mismatch repair protein MutS [Enterococcus faecalis OG1RF]
gi|427185083|emb|CCO72307.1| DNA mismatch repair protein, mutS2 family [Enterococcus faecalis
str. Symbioflor 1]
gi|429512902|gb|ELA02497.1| MutS 2 protein [Enterococcus faecalis OG1X]
gi|429516421|gb|ELA05913.1| MutS 2 protein [Enterococcus faecalis M7]
Length = 788
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 221/386 (57%), Gaps = 28/386 (7%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFADIG
Sbjct: 320 DIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 380 DEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSLGAK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++RLG
Sbjct: 440 GAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISKRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
L +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L +
Sbjct: 499 LDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKEAYQ 558
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
E +R +++QK K A ++ A + + ++++ + Q
Sbjct: 559 VFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLESGQ- 602
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVS 807
+ G +H L +T + ++ H T + K+ K + K + GD V V+
Sbjct: 603 ----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEVIVN 652
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMK 833
++G++GT++K + K + VQ+G +K
Sbjct: 653 TYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|400289481|ref|ZP_10791510.1| putative DNA mismatch repair protein MutS2 [Streptococcus ratti
FA-1 = DSM 20564]
gi|399922119|gb|EJN94934.1| putative DNA mismatch repair protein MutS2 [Streptococcus ratti
FA-1 = DSM 20564]
Length = 776
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 181/302 (59%), Gaps = 14/302 (4%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L HPV D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ + +K F
Sbjct: 307 LPHPVANDLHFDTDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADQGSKTAIFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I +I+ + SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHIVDILQAADKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S ++ T+ TTH+ ELK +D+ ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-NIKTMVTTHYPELKAYGIESDYVENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N +I ER ++Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVSEAENLTDTDS-DVNRII---ERLESQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
L+ R + + + +++ A A A+ +V K+ L S S +SL K QL
Sbjct: 538 ENLKFNRAVKKLYNEFSHARDKELDKARAKAQEIVDKA---LAESDSILKSL--KAKSQL 592
Query: 741 RP 742
+P
Sbjct: 593 KP 594
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 85/160 (53%), Gaps = 6/160 (3%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHGR 251
+Q +++ G I+D ASP L+Q R ++Q E+++ Q++ +++ + + L E ++S +GR
Sbjct: 134 LQAINDSGFIEDFASPELRQIRHKIQQNEQQIRQILQEMLKKQGD--LLAENLIASRNGR 191
Query: 252 LCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ + G++ S+SG IEP + V LN+++ QARA +L AL+
Sbjct: 192 SVLPVKNTYRHRIAGVVHDISTSGSTVYIEPRAVVNLNEDMTQARADERHEMTRILQALS 251
Query: 310 EKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
++++ + I + LD V A+ Y + + P++
Sbjct: 252 DRLRPVVAAIRNNAWLLGHLDFVRAKYLYMREYQASVPSL 291
>gi|422881466|ref|ZP_16927922.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK355]
gi|332364404|gb|EGJ42178.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK355]
Length = 777
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 149/390 (38%), Positives = 216/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 THPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLAEVIVGHAQEQTNTDS-DVNRII---ERLEEQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S ++LH K ++ + Q + P T S K +K
Sbjct: 580 E--------------SILKNLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 622 QA---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 86/167 (51%), Gaps = 6/167 (3%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLC 253
+Q V++ G I++ AS +L + R ++Q E ++ +++ +++N+ V+S +GR
Sbjct: 134 LQAVNDGGFIENFASESLSRIRRKIQENENQVREILQEILKNKGEMLAVQVVASRNGRNV 193
Query: 254 I---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ T +++S G++ S+SG IEP + V LN+E+ +RA + +L L+
Sbjct: 194 LPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSRADERYEIQRILQELS 251
Query: 310 EKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+ + EI I LD+V A+ + G P++ QD++
Sbjct: 252 DLFRPHAAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQDIQ 298
>gi|282850354|ref|ZP_06259733.1| putative recombination and DNA strand exchange inhibitor protein
[Veillonella parvula ATCC 17745]
gi|282579847|gb|EFB85251.1| putative recombination and DNA strand exchange inhibitor protein
[Veillonella parvula ATCC 17745]
Length = 812
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 199/691 (28%), Positives = 323/691 (46%), Gaps = 148/691 (21%)
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L+++ MP T I F +V DE G + D+ASP L R + K+
Sbjct: 136 LWVQDMPNTDRIENRF---------KRVFDEKGELLDTASPKLASLRNTIIKTREKIKND 186
Query: 229 MDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAV 284
+ ++ +++N+ F E ++ + R I + + F GL+ S++G IEP+ V
Sbjct: 187 IQAILHDKDNQKYFQETIITQRNNRYVIPVKQEYRQYFDGLIHDRSATGQTLYIEPMRLV 246
Query: 285 PLNDELQQARASVTKAEEDVLL------ALTEKMQVDL-DEIEKMLNGIIQLDVVNARAT 337
LN+ELQ+A + E++VL AL ++ DL D EK + ++ V +A+
Sbjct: 247 NLNNELQEA---LIGEEQEVLRIYRELSALVKQHSNDLMDACEK----VSHIEFVYGKAS 299
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
++S+ G P I S++R T+ L +A HPL+
Sbjct: 300 LAISYKGV-PAIL-------------------STDR--TVSLMRARHPLI---------- 327
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
P+ M VP +I + R+
Sbjct: 328 ---------------------------------PTNM---------VVPTNIQLGTSYRI 345
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
L+ITG NTGGKT+ LKT+GL +M + GL I + + +P F ++FADIGDEQS+ SLS
Sbjct: 346 LLITGSNTGGKTVSLKTLGLLSLMNQCGLFIPADHGSMLPVFHNIFADIGDEQSIEASLS 405
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ Q+ +II LVLLDE+G+GT+P EG+AL +S+LE F + G+L+ + +TH
Sbjct: 406 TFSAHMTQVISIIKHCGPNDLVLLDELGSGTDPEEGSALAVSILEFFRKKGALMMV-STH 464
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y + EN +EFDE LKPTY++ GV G S A++IA RLGLP +V+ A
Sbjct: 465 YNELKNYAYHTEGIENGHVEFDERTLKPTYRLHIGVAGSSHALSIAARLGLPKDIVERAT 524
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ +K+QF H E +LS +L++ L + AS+R
Sbjct: 525 E------------------YKSQFGSHEMEE----VLS-DLNEQLRK---------ASER 552
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
R ++K D R + K +Q ++ R + +AQ S +SL +
Sbjct: 553 ERALKKELDEIRRMRGQLEKEKKQF----NEKRKQILAKAQADAESMKRSLRVEGEAIIK 608
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIK--QSP-----RVKRTELPNVGDLVHVSSFG 810
L + F +T DK + A+ + + ++P + + VG V+V+S
Sbjct: 609 Q-LKAQFSETNKDKRQSAINAARKRISSVHVPEAPVDDDRKSLTADAIKVGQAVYVTSLR 667
Query: 811 KKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GTV+ + ++ + V + + +K +++
Sbjct: 668 SLGTVLSINGNR--VNVDINGLTATVKVSEL 696
>gi|257086832|ref|ZP_05581193.1| MutS 2 protein [Enterococcus faecalis D6]
gi|422722610|ref|ZP_16779160.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX2137]
gi|424673309|ref|ZP_18110252.1| MutS2 family protein [Enterococcus faecalis 599]
gi|256994862|gb|EEU82164.1| MutS 2 protein [Enterococcus faecalis D6]
gi|315027355|gb|EFT39287.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX2137]
gi|402353119|gb|EJU87955.1| MutS2 family protein [Enterococcus faecalis 599]
Length = 788
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 222/389 (57%), Gaps = 28/389 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFA
Sbjct: 317 VANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 GAKGAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L
Sbjct: 496 RLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKE 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ E +R +++QK K A ++ A + + ++++ +
Sbjct: 556 AYQVFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLES 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
Q + G +H L +T + ++ H T + K+ K + K + GD V
Sbjct: 601 GQ-----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEV 649
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
V+++G++GT++K + K + VQ+G +K
Sbjct: 650 IVNTYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNVFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|347727052|gb|AEP19884.1| recombination inhibitory protein [Exiguobacterium sp. 11-28]
Length = 784
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 188/618 (30%), Positives = 301/618 (48%), Gaps = 104/618 (16%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
+LRVLE++KL +++ A +SLG+E L + TY L L+ T A E+ +
Sbjct: 4 ALRVLEYEKLRQQLAAHAASSLGKERALN--MQPDYTYDRVLSNLNVTREATEVVRL-RD 60
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI- 171
L L G L+ V+S ++ S L +E LAV A++ ++ +++ DL I
Sbjct: 61 RLPLGG--LTDVRSEVKRAAIGSVLSTSELLAVAAVMYSGRQVKNFFEKLHEDNEDLRIP 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
R + + +L + +SI +D+ G+++DSAS L+ R Q++ E + +D
Sbjct: 119 RLDEYAERLTKLI---EVEQSIRHAIDDQGTVQDSASDRLRGLRTQLRSFEGSVRSRIDN 175
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLN 287
++R NN + + V+ + R + + + +F G++ S+SG IEP
Sbjct: 176 ILR--NNAKMLSDAIVTIRNDRYVVPVKMEYRQAFGGIVHDQSASGQTLFIEP------- 226
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
QA S+ ++V L K + ++D I L+ ++ GG +
Sbjct: 227 ----QAIVSINNEIQEVRL----KERAEIDRILSELSNLV---------------GGVAD 263
Query: 348 NIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANT 407
++ + D+ +L V +KV+ + KA P L + + K +QA
Sbjct: 264 SVVINLDVLATLDF--VFAKVAYG------HQLKATEPKLNDEREIKLKQAR-------- 307
Query: 408 ELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHP-------VPIDIFIARKTRVLVI 460
HP VPI + + LVI
Sbjct: 308 -----------------------------------HPFIPQDEVVPITVELGEAFTSLVI 332
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT+ LKT+GL +M +SGL++ + ++ FD+++ADIGDEQS+ QSLSTFS
Sbjct: 333 TGPNTGGKTVTLKTLGLLQLMVQSGLYVPAEFGTELSVFDAIYADIGDEQSIEQSLSTFS 392
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H+ I +++ + SLVL DE+GAGT+P EG AL +++L+ G+ + ATTH+ E
Sbjct: 393 SHMTNIVSMLDKIDFMSLVLFDELGAGTDPQEGAALAIAILDEVKRRGARVA-ATTHYSE 451
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK Y+ + NA MEFD L PTY++L GVPGRS+A I+ RLGL V+ AR
Sbjct: 452 LKAYAYNREGVMNASMEFDIESLSPTYRLLIGVPGRSNAFEISRRLGLSEQVIDKARSHV 511
Query: 641 GAASAEINEVIIEMERFK 658
G + + +I E+E K
Sbjct: 512 GTDAESVESMINELEAAK 529
>gi|347530511|ref|YP_004837274.1| DNA mismatch repair protein [Roseburia hominis A2-183]
gi|345500659|gb|AEN95342.1| DNA mismatch repair protein [Roseburia hominis A2-183]
Length = 795
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/405 (33%), Positives = 210/405 (51%), Gaps = 43/405 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + R+L++TGPNTGGKT+ LKTVGL +M +SGLHI +SE +++ FD VFA
Sbjct: 318 VPIDVRLGEDFRLLIVTGPNTGGKTVSLKTVGLLTLMGQSGLHIPASERSELGIFDEVFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I+ Q +SLVL DE+ AGT+P EG AL +S+L
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIIRILEQVNDRSLVLFDELCAGTDPTEGAALAISILSKL 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK S ENAC EFD L PTY++L G+PG+S+A I+E
Sbjct: 438 HLYGARI-MATTHYSELKVYALSTPGVENACCEFDVATLSPTYRLLIGIPGKSNAFAISE 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
+LGLP ++ +A+ + + ++I ++E+ ++ E + +L + L +
Sbjct: 497 KLGLPSDLITDAKGRISKSEGDFEDLIADLEKSRSTIEREQLEINQYKAEIESLKEKLEQ 556
Query: 685 -------TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
+R KIL Q + +++ D A +K + P S + K
Sbjct: 557 KQERLDSSRNKILREANEQAYNILKEAKDVADETIRNFNKYGKAGAPV-----SEMEKER 611
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL 797
+LR ++ K V N P+ R
Sbjct: 612 TKLRGKMDKAAQKMSEQKKASVPNHNV-------------------------PKKLR--- 643
Query: 798 PNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
+GD V V S KGTV + ++ ++ VQ+G ++ ++ D++
Sbjct: 644 --IGDSVKVISMNLKGTVHSLPNARGDLYVQMGILRSLVNINDLI 686
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 131/309 (42%), Gaps = 35/309 (11%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREAT-----LTQLWSINQTYQDSLRLLDETNAAIEMQK 108
L LE++K+ ++ +A ++ + +T I Q Q + ++A + K
Sbjct: 6 LHTLEYNKILDQLTEYAFSADAKSRCQKLRPITDRAQIEQLQQQT------SDALSRLFK 59
Query: 109 HGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED-- 166
+GS S +GV + ++ +++ + L E L V +LL+ ++ + R+ D
Sbjct: 60 YGSLSF--SGV--TDIRDSLKRLEIGGALSAIELLRVCSLLESAKRAKAFARSQDDNDQP 115
Query: 167 ----ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLE 222
L+ PLT L I + + + I D AS L R ++ +
Sbjct: 116 DDSLTSLFAGIEPLT----------PLCDEIRRCILSEDEIADDASSTLHSIRRSMRGMN 165
Query: 223 RKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSV--I 278
K+ M+ +I N S + ++ GR C+ A+ S ++ S GS I
Sbjct: 166 DKIRAQMNSMINNTTTRSYLQDTVITMRDGRYCLPVKAEAKSLVPGMIHDQSSTGSTLFI 225
Query: 279 EPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATY 338
EP++ V LN+E ++ + + E +L L+ ++ + +LD + ARA +
Sbjct: 226 EPMAVVNLNNEYKELQLREQEEIEVILAGLSNLTASYATQLLADYELLTELDFIFARAAF 285
Query: 339 SLSFGGTSP 347
+ ++ G +P
Sbjct: 286 AQTYNGVAP 294
>gi|306832176|ref|ZP_07465330.1| DNA mismatch repair protein MutS [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304425615|gb|EFM28733.1| DNA mismatch repair protein MutS [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 778
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 222/397 (55%), Gaps = 37/397 (9%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ + V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + +KV F+
Sbjct: 307 LTNPVANDLHFLNELTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSKVAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + SLVL+DE+GAGT+P EG +L +++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTNIVEILAAADKDSLVLVDELGAGTDPQEGASLAIAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + T+ATTH+ ELK +F ENA MEFD L PTY + GVPGRS+A
Sbjct: 427 LEHL-RLMEIKTMATTHYPELKAYGIETEFVENASMEFDTETLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A +L + ++N +I +E E HE+R L + + +
Sbjct: 486 EIARRLGLAEIIVNEAERLTD-SDTDVNRIIERLE-------EQTHESRKRLDHIKEVEQ 537
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ L+ R + + K +++ A+A A+ +V K+ + S ++L H RA L
Sbjct: 538 DNLKFNRAVKKLYNEFSHAKDKELEKASAKAQEIVDKA---MAESEEILKNL-HDRA-SL 592
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+P H K+Q + K+ S + V + R P V
Sbjct: 593 KP------HEVIEAKSQ-----------LKKLAPEVDLSKNKVLKKAKKLRA-----PRV 630
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
GD + V+++G++GT++ + + VQVG +K +K
Sbjct: 631 GDDIVVTAYGQRGTLVN-QGKNGKWEVQVGLIKMTLK 666
>gi|256762410|ref|ZP_05502990.1| DNA mismatch repair protein mutS [Enterococcus faecalis T3]
gi|307277459|ref|ZP_07558551.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX2134]
gi|422694899|ref|ZP_16752887.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX4244]
gi|256683661|gb|EEU23356.1| DNA mismatch repair protein mutS [Enterococcus faecalis T3]
gi|306505724|gb|EFM74902.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX2134]
gi|315147901|gb|EFT91917.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX4244]
Length = 788
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 222/389 (57%), Gaps = 28/389 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFA
Sbjct: 317 VANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 GAKGAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L
Sbjct: 496 RLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKE 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ E +R +++QK K A ++ A + + ++++ +
Sbjct: 556 AYQVFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLES 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
Q + G +H L +T + ++ H T + K+ K + K + GD V
Sbjct: 601 GQ-----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEV 649
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
V+++G++GT++K + K + VQ+G +K
Sbjct: 650 IVNTYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|257082629|ref|ZP_05576990.1| MutS 2 protein [Enterococcus faecalis E1Sol]
gi|256990659|gb|EEU77961.1| MutS 2 protein [Enterococcus faecalis E1Sol]
Length = 788
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 222/389 (57%), Gaps = 28/389 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFA
Sbjct: 317 VANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 GAKGAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L
Sbjct: 496 RLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKE 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ E +R +++QK K A ++ A + + ++++ +
Sbjct: 556 AYQVFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLES 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
Q + G +H L +T + ++ H T + K+ K + K + GD V
Sbjct: 601 GQ-----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEV 649
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
V+++G++GT++K + K + VQ+G +K
Sbjct: 650 IVNTYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNVFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|422701663|ref|ZP_16759503.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX1342]
gi|315170093|gb|EFU14110.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX1342]
Length = 788
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 222/389 (57%), Gaps = 28/389 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFA
Sbjct: 317 VANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 GAKGAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLNPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L
Sbjct: 496 RLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKE 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ E +R +++QK K A ++ A + + ++++ +
Sbjct: 556 AYQVFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLES 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
Q + G +H L +T + ++ H T + K+ K + K + GD V
Sbjct: 601 GQ-----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEV 649
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
V+++G++GT++K + K + VQ+G +K
Sbjct: 650 IVNTYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|384549903|ref|YP_005739155.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus JKD6159]
gi|302332752|gb|ADL22945.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus JKD6159]
Length = 782
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/384 (35%), Positives = 218/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ VK IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------VKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|29375971|ref|NP_815125.1| MutS2 family protein [Enterococcus faecalis V583]
gi|227518669|ref|ZP_03948718.1| MutS family DNA mismatch repair protein [Enterococcus faecalis
TX0104]
gi|227553200|ref|ZP_03983249.1| MutS family DNA mismatch repair protein [Enterococcus faecalis
HH22]
gi|422715235|ref|ZP_16771958.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0309A]
gi|422716036|ref|ZP_16772752.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0309B]
gi|424676844|ref|ZP_18113715.1| MutS2 family protein [Enterococcus faecalis ERV103]
gi|424681338|ref|ZP_18118125.1| MutS2 family protein [Enterococcus faecalis ERV116]
gi|424683526|ref|ZP_18120276.1| MutS2 family protein [Enterococcus faecalis ERV129]
gi|424686569|ref|ZP_18123237.1| MutS2 family protein [Enterococcus faecalis ERV25]
gi|424690157|ref|ZP_18126692.1| MutS2 family protein [Enterococcus faecalis ERV31]
gi|424695180|ref|ZP_18131563.1| MutS2 family protein [Enterococcus faecalis ERV37]
gi|424697010|ref|ZP_18133351.1| MutS2 family protein [Enterococcus faecalis ERV41]
gi|424699605|ref|ZP_18135816.1| MutS2 family protein [Enterococcus faecalis ERV62]
gi|424703382|ref|ZP_18139516.1| MutS2 family protein [Enterococcus faecalis ERV63]
gi|424706073|ref|ZP_18142086.1| MutS2 family protein [Enterococcus faecalis ERV65]
gi|424717217|ref|ZP_18146515.1| MutS2 family protein [Enterococcus faecalis ERV68]
gi|424720798|ref|ZP_18149899.1| MutS2 family protein [Enterococcus faecalis ERV72]
gi|424724349|ref|ZP_18153298.1| MutS2 family protein [Enterococcus faecalis ERV73]
gi|424733935|ref|ZP_18162490.1| MutS2 family protein [Enterococcus faecalis ERV81]
gi|424743762|ref|ZP_18172067.1| MutS2 family protein [Enterococcus faecalis ERV85]
gi|424749463|ref|ZP_18177566.1| MutS2 family protein [Enterococcus faecalis ERV93]
gi|81722394|sp|Q835H3.1|MUTS2_ENTFA RecName: Full=MutS2 protein
gi|29343433|gb|AAO81195.1| MutS2 family protein [Enterococcus faecalis V583]
gi|227073849|gb|EEI11812.1| MutS family DNA mismatch repair protein [Enterococcus faecalis
TX0104]
gi|227177673|gb|EEI58645.1| MutS family DNA mismatch repair protein [Enterococcus faecalis
HH22]
gi|315575541|gb|EFU87732.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0309B]
gi|315580018|gb|EFU92209.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0309A]
gi|402351045|gb|EJU85937.1| MutS2 family protein [Enterococcus faecalis ERV116]
gi|402356464|gb|EJU91198.1| MutS2 family protein [Enterococcus faecalis ERV103]
gi|402364524|gb|EJU98959.1| MutS2 family protein [Enterococcus faecalis ERV129]
gi|402364844|gb|EJU99275.1| MutS2 family protein [Enterococcus faecalis ERV31]
gi|402367423|gb|EJV01764.1| MutS2 family protein [Enterococcus faecalis ERV25]
gi|402368722|gb|EJV03029.1| MutS2 family protein [Enterococcus faecalis ERV37]
gi|402375534|gb|EJV09514.1| MutS2 family protein [Enterococcus faecalis ERV62]
gi|402377339|gb|EJV11250.1| MutS2 family protein [Enterococcus faecalis ERV41]
gi|402385387|gb|EJV18927.1| MutS2 family protein [Enterococcus faecalis ERV63]
gi|402386565|gb|EJV20071.1| MutS2 family protein [Enterococcus faecalis ERV68]
gi|402388716|gb|EJV22144.1| MutS2 family protein [Enterococcus faecalis ERV65]
gi|402390945|gb|EJV24265.1| MutS2 family protein [Enterococcus faecalis ERV81]
gi|402393269|gb|EJV26499.1| MutS2 family protein [Enterococcus faecalis ERV72]
gi|402395332|gb|EJV28441.1| MutS2 family protein [Enterococcus faecalis ERV73]
gi|402399891|gb|EJV32745.1| MutS2 family protein [Enterococcus faecalis ERV85]
gi|402407714|gb|EJV40219.1| MutS2 family protein [Enterococcus faecalis ERV93]
Length = 788
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 222/389 (57%), Gaps = 28/389 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFA
Sbjct: 317 VANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 GAKGAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L
Sbjct: 496 RLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKE 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ E +R +++QK K A ++ A + + ++++ +
Sbjct: 556 AYQVFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLES 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
Q + G +H L +T + ++ H T + K+ K + K + GD V
Sbjct: 601 GQ-----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEV 649
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
V+++G++GT++K + K + VQ+G +K
Sbjct: 650 IVNTYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|257085338|ref|ZP_05579699.1| MutS 2 protein [Enterococcus faecalis Fly1]
gi|256993368|gb|EEU80670.1| MutS 2 protein [Enterococcus faecalis Fly1]
Length = 788
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 222/389 (57%), Gaps = 28/389 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFA
Sbjct: 317 VANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 GAKGAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L
Sbjct: 496 RLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKE 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ E +R +++QK K A ++ A + + ++++ +
Sbjct: 556 AYQVFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLES 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
Q + G +H L +T + ++ H T + K+ K + K + GD V
Sbjct: 601 GQ-----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEV 649
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
V+++G++GT++K + K + VQ+G +K
Sbjct: 650 IVNTYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKHAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|237741375|ref|ZP_04571856.1| DNA mismatch repair protein mutS [Fusobacterium sp. 4_1_13]
gi|229430907|gb|EEO41119.1| DNA mismatch repair protein mutS [Fusobacterium sp. 4_1_13]
Length = 778
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 145/417 (34%), Positives = 226/417 (54%), Gaps = 45/417 (10%)
Query: 435 QVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL 486
++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA SG+
Sbjct: 297 EILSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMALSGI 356
Query: 487 HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGA 546
I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE+G+
Sbjct: 357 PIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDELGS 416
Query: 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPT 606
GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L PT
Sbjct: 417 GTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTLSPT 475
Query: 607 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVH 666
Y++L G+PG S+A+ IA+R+GLP ++ AR + ++ E +IE + K+Q L+ +
Sbjct: 476 YRLLVGIPGESNALTIAQRMGLPESIISKARAYISEDNKKV-EKMIENIKTKSQELDEMR 534
Query: 667 E--ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCP 724
E AR L+ +I A Q ++K + I +S ++ + +
Sbjct: 535 ERFAR-------------LQEEARIDRERAKQETLIIEKQKN--EIIKSAYEEAEKMMNE 579
Query: 725 SASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVK 784
++A +LV K ++ ++ KN ++L++ ++ VE VVK
Sbjct: 580 MRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VVK 627
Query: 785 DIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
IK K VGD V V S + ++K+ SKE VQ G +K + F +I
Sbjct: 628 KIKTKVNFK------VGDRVFVKSINQFANILKINTSKESASVQAGILKLEVPFDEI 678
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 10/154 (6%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L + + F E ++ G
Sbjct: 133 INKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFEEPSLSNAFQEKIITERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
L + E ++ + D+I + ++ LD++NA++ Y+
Sbjct: 250 LRIAELLRNNKDDILTIGEKVMYLDILNAKSIYA 283
>gi|294791999|ref|ZP_06757147.1| MutS2 protein [Veillonella sp. 6_1_27]
gi|294457229|gb|EFG25591.1| MutS2 protein [Veillonella sp. 6_1_27]
Length = 792
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 203/694 (29%), Positives = 325/694 (46%), Gaps = 154/694 (22%)
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L+++ MP T I F +V DE G + D+ASP L R + K+
Sbjct: 116 LWVQDMPNTDRIENRF---------KRVFDEKGELLDTASPKLASLRNTIIKTREKIKND 166
Query: 229 MDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAV 284
+ ++ +++N+ F E ++ + R I + + F GL+ S++G IEP+ V
Sbjct: 167 IQAILHDKDNQKYFQETIITQRNNRYVIPVKQEYRQYFDGLIHDRSATGQTLYIEPMRLV 226
Query: 285 PLNDELQQARASVTKAEEDVLL------ALTEKMQVDL-DEIEKMLNGIIQLDVVNARAT 337
LN+ELQ+A + E++VL AL ++ DL D EK + ++ V +A+
Sbjct: 227 NLNNELQEA---LIGEEQEVLRIYRELSALVKQHSNDLMDACEK----VSHIEFVYGKAS 279
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
++S+ G P I S++R T+ L +A HPL+
Sbjct: 280 LAISYKGV-PAIL-------------------STDR--TVNLMRARHPLI---------- 307
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
P M VP +I + R+
Sbjct: 308 ---------------------------------PPNM---------VVPTNIQLGTSYRI 325
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
L+ITG NTGGKT+ LKT+GL +M + GL I + + +P F ++FADIGDEQS+ SLS
Sbjct: 326 LLITGSNTGGKTVSLKTLGLLSLMNQCGLFIPADHGSMLPVFHNIFADIGDEQSIEASLS 385
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ Q+ +II LVLLDE+G+GT+P EG+AL +S+LE F + G+L+ + +TH
Sbjct: 386 TFSAHMTQVISIIKHCGPNDLVLLDELGSGTDPEEGSALAVSILEFFRKKGALMMV-STH 444
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y + EN +EFDE LKPTY++ GV G S A++IA RLGLP +V+ A
Sbjct: 445 YNELKNYAYHTEGIENGHVEFDERTLKPTYRLHIGVAGSSHALSIAARLGLPKDIVERAT 504
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ +K+QF H E +LS +L++ L + AS+R
Sbjct: 505 E------------------YKSQFGSHEMEE----VLS-DLNEQLRK---------ASER 532
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
R ++K D R + K +Q ++ R + +AQ S +SL +
Sbjct: 533 ERALKKELDETGRMRGQLEKEKKQF----NENRKQILAKAQADAESMKRSLRVEGEAIIK 588
Query: 758 HVLTSNFQQTTVDKVEHPATAS----SSV------VKDIKQSPRVKRTELPNVGDLVHVS 807
L + F +T D+++ A+ SSV V D ++S + VG V+V+
Sbjct: 589 Q-LKAQFSETNKDRLQSAINAARKGISSVHVPEAAVDDDRKSLTA---DAIKVGQAVYVT 644
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
S GTV+ + ++ + V + + +K +++
Sbjct: 645 SLRSLGTVLSINGNR--VNVDINGLTATVKVSEL 676
>gi|189425838|ref|YP_001953015.1| MutS2 family protein [Geobacter lovleyi SZ]
gi|189422097|gb|ACD96495.1| MutS2 family protein [Geobacter lovleyi SZ]
Length = 785
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 191/671 (28%), Positives = 316/671 (47%), Gaps = 120/671 (17%)
Query: 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQ 107
+ + +L LE++K+ S++S AR+ + + + S Q + S + ++E
Sbjct: 2 IPHTTLSRLEFNKVLQSIASHARSDITAHSIMAMQPSRQPQEIRTSWQRIEEIR------ 55
Query: 108 KHGSCSLDLTGVDLSLVKSAIREVRRASPL----RPNEA-LAVVALLQFSETL----QLS 158
DL + L S ++R PL RP+ A L+ LL+F L +L+
Sbjct: 56 -------DLLRQRICLRISRFSDIR---PLLEAVRPSGAILSPFELLEFIPVLGSLAELA 105
Query: 159 LRAAIKEDADLYIRFMPLTQMIMQLFVN-RSLIKSIMQVVDEDGSIKDSASPALKQSRGQ 217
+ A +ED +P +++ V +++ + +D++G+I DSAS L Q R
Sbjct: 106 RQLAPRED-------IPALKLLSPFPVAFNDILEPLAATLDDEGNILDSASQELSQIRKA 158
Query: 218 VQMLERKLYQLMDMLIRNENNESLFLEVSSI---HGRLCIRTGADQLSFKGLLLS----- 269
+ L ++ + ++ +R ++FL+ I GR I D KG++
Sbjct: 159 KRTLAARVRKKLEEFVRRHET-AIFLQDDFITIRSGRWVIPVRMDS---KGMVPGVVHDV 214
Query: 270 SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQL 329
SSSG + +EPL +P +EL+ A E +L L+ ++ D ++I +++L
Sbjct: 215 SSSGETAFMEPLEIIPFVNELENLSAEEKAEEIRILRRLSAWIREDAEQIGACFKSLVEL 274
Query: 330 DVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQ 389
D +++ A ++ F + P + + ++ L A HPLLL
Sbjct: 275 DRLDSVAAFAEKFSMSVPEL----------------------NQNGSLRLLSARHPLLLV 312
Query: 390 QHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDI 449
+Q ++DT +P VP+D+
Sbjct: 313 MREQ------------------------------QQDT--TPI------------VPLDL 328
Query: 450 FIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDE 509
+ +TRVL I+GPN GGKTI LKTVGL MA SG+ + +S + +P D++ DIGD+
Sbjct: 329 ELGNETRVLTISGPNAGGKTIALKTVGLITAMALSGMPVPASPSSSIPLLDALLVDIGDD 388
Query: 510 QSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 569
QS+ QSLSTFS H+ I I+ Q+ S+SLVLLDE+G GT PL+G A+G ++L G+
Sbjct: 389 QSIEQSLSTFSAHVAAIAGILGQTGSRSLVLLDELGTGTEPLQGAAIGCAVLHELQSRGA 448
Query: 570 LLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLP 629
L+ +ATTH E+ + +NA MEFD P Y+++ G PG+S A+ A R GLP
Sbjct: 449 LV-LATTHLTEIVGFVQRSQGMQNAGMEFDSATWTPLYRLVMGEPGQSHALETARRYGLP 507
Query: 630 GIVVQNARQLYGAASAEINEVIIEMERFKTQF---LEHVHEARHFL----MLSRNLHKNL 682
V+Q AR L G A +I E+ + + L+ + R L M + +L
Sbjct: 508 ESVLQFARNLLGDAGTAFAGIIDELRQKRNALADELDRQQQERQRLDGLAMALKQQEADL 567
Query: 683 LRTRRKILEHC 693
+R R++ +E
Sbjct: 568 VRLRQETIEKA 578
>gi|306820562|ref|ZP_07454193.1| DNA mismatch repair protein MutS [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551379|gb|EFM39339.1| DNA mismatch repair protein MutS [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 785
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/407 (35%), Positives = 215/407 (52%), Gaps = 57/407 (14%)
Query: 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD 508
I I + LVITGPNTGGKT+ LKT+GL +M + GLHI + F+++FADIGD
Sbjct: 318 IEIGKSYTTLVITGPNTGGKTVTLKTLGLLCIMLQCGLHIPCDIGSSGYIFNNIFADIGD 377
Query: 509 EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
EQS++QSLSTFS H+ I I+++ SLVL DE+GAGT+P+EG L +S+L+ E
Sbjct: 378 EQSIAQSLSTFSAHMTNIVGIMNEVDENSLVLFDELGAGTDPVEGAGLAISILDTLKEK- 436
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+LT ATTH+ ELK + D NA +EFD L PTY+++ G+PG+S+A I+++LGL
Sbjct: 437 DILTAATTHYSELKNYALTVDKVTNASVEFDVNTLSPTYRLIIGIPGKSNAFEISQKLGL 496
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQF------LEHVHEARHFLMLS-RNLHKN 681
++Q AR S ++ +VI ++++ K ++ LE E F+ L N +
Sbjct: 497 STGIIQRARDSIHTESIKVEDVITKLDKIKNEYEEKKQRLEKELEDAEFIRLKLENRERR 556
Query: 682 LLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLR 741
+ KILE ++ ARSLV + A ++K +L+
Sbjct: 557 AQQNSEKILEEAKNK--------------ARSLVEE--------AKNEADEINKVLNKLK 594
Query: 742 PSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKD---IKQSPRVKRTELP 798
S S+++ +DK + + KD K+ VK E P
Sbjct: 595 KS------------------SDYKN--IDKKMNEIKGRINTYKDKYAKKKEELVKSNEKP 634
Query: 799 ----NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
VGD V+V+SF + V+ V+ K E+VVQ+G +K +K +I
Sbjct: 635 IENVGVGDTVYVNSFAQNAKVLSVDDKKNEVVVQLGAIKMTLKKENI 681
>gi|257419214|ref|ZP_05596208.1| MutS2 protein [Enterococcus faecalis T11]
gi|257161042|gb|EEU91002.1| MutS2 protein [Enterococcus faecalis T11]
Length = 788
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 221/386 (57%), Gaps = 28/386 (7%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFADIG
Sbjct: 320 DIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 380 DEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSLGAK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++RLG
Sbjct: 440 GAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISKRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
L +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L +
Sbjct: 499 LDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKEAYQ 558
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
E +R +++QK K A ++ A + + ++++ + Q
Sbjct: 559 VFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLESGQ- 602
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVS 807
+ G +H L +T + ++ H T + K+ K + K + GD V V+
Sbjct: 603 ----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEVIVN 652
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMK 833
++G++GT++K + K + VQ+G +K
Sbjct: 653 TYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|229545911|ref|ZP_04434636.1| MutS family DNA mismatch repair protein [Enterococcus faecalis
TX1322]
gi|256853039|ref|ZP_05558409.1| MutS2 protein [Enterococcus faecalis T8]
gi|307291392|ref|ZP_07571276.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0411]
gi|229308979|gb|EEN74966.1| MutS family DNA mismatch repair protein [Enterococcus faecalis
TX1322]
gi|256711498|gb|EEU26536.1| MutS2 protein [Enterococcus faecalis T8]
gi|306497623|gb|EFM67156.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0411]
Length = 788
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 221/386 (57%), Gaps = 28/386 (7%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFADIG
Sbjct: 320 DIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 380 DEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSLGAK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++RLG
Sbjct: 440 GAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISKRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
L +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L +
Sbjct: 499 LDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKEAYQ 558
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
E +R +++QK K A ++ A + + ++++ + Q
Sbjct: 559 VFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLESGQ- 602
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVS 807
+ G +H L +T + ++ H T + K+ K + K + GD V V+
Sbjct: 603 ----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEVIVN 652
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMK 833
++G++GT++K + K + VQ+G +K
Sbjct: 653 TYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|307288101|ref|ZP_07568111.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0109]
gi|422704386|ref|ZP_16762196.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX1302]
gi|306500837|gb|EFM70155.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0109]
gi|315164284|gb|EFU08301.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX1302]
Length = 788
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 221/386 (57%), Gaps = 28/386 (7%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFADIG
Sbjct: 320 DIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 380 DEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSLGAK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++RLG
Sbjct: 440 GAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISKRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
L +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L +
Sbjct: 499 LDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKEAYQ 558
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
E +R +++QK K A ++ A + + ++++ + Q
Sbjct: 559 VFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLESGQ- 602
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVS 807
+ G +H L +T + ++ H T + K+ K + K + GD V V+
Sbjct: 603 ----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEVIVN 652
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMK 833
++G++GT++K + K + VQ+G +K
Sbjct: 653 TYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|260887326|ref|ZP_05898589.1| DNA mismatch repair protein MutS [Selenomonas sputigena ATCC 35185]
gi|330838921|ref|YP_004413501.1| MutS2 family protein [Selenomonas sputigena ATCC 35185]
gi|260862962|gb|EEX77462.1| DNA mismatch repair protein MutS [Selenomonas sputigena ATCC 35185]
gi|329746685|gb|AEC00042.1| MutS2 family protein [Selenomonas sputigena ATCC 35185]
Length = 791
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 217/805 (26%), Positives = 369/805 (45%), Gaps = 145/805 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
E+L LE+DK+ + + A + LG+E L S + + + LL ET A+ + S
Sbjct: 4 ETLDTLEYDKIRAMLEAKAGSVLGKEKARAVLPSGD--FAEVEELLRETEEAVRLSAFSS 61
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRA--AIKEDADL 169
+ + ++R + L E AV+ L F++ L ++RA A+K
Sbjct: 62 PPM-----------GGVFDIRES--LAKAERGAVLDLGDFTDLLS-TMRAMRAVK----- 102
Query: 170 YIRFMPLTQMIMQLFVNRS--------LIKSIMQVVDEDGSIKDSASPALKQSRGQVQML 221
RF +M + L ++ L + + VDE G++ D AS L + R +++
Sbjct: 103 --RFFKEVEMDLPLIKEQAKGIEILGQLERRLENSVDEHGNLLDDASVELSRIRRELRSG 160
Query: 222 ERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSV 277
R+ + M+ ++ + F + ++ R I + + SF G++ S+SG
Sbjct: 161 RRRAKEQMEAILHRTEYQKFFQDAIITQRAERNVIPIKQEYRQSFPGIVHDQSASGATLF 220
Query: 278 IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337
IEP++ V LN++L+Q + + +L L++++ + +E + LD + ARA
Sbjct: 221 IEPMALVDLNNDLKQLALAEKTEVQRILRLLSQEVGKNGSVLEGNCAILASLDFIFARAK 280
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
L DM+ +K + RE L A HPL+
Sbjct: 281 -------------LAADMQ---------AKRPAINREGRTKLVAARHPLI---------- 308
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
+ A VPIDI + R+
Sbjct: 309 ------------------------------------------DAAKVVPIDIALGEAYRM 326
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
L+ITGPNTGGKT+ LKT+GL +M +SG +I ++ +++ + +V+ IGDEQS+ QSLS
Sbjct: 327 LLITGPNTGGKTVSLKTIGLFALMVQSGCYIPAAAGSEISVYTNVYTVIGDEQSIEQSLS 386
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ + ++ L+LLDEIGAGT+P EG AL M++LE F GS TI TTH
Sbjct: 387 TFSAHMSHLVKLLECVEGTDLLLLDEIGAGTDPEEGAALAMAILEQFLARGSS-TIVTTH 445
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELKT ++ + ENAC+EFD L+PTY++L G+PG S+A I+ RLGL + A+
Sbjct: 446 YSELKTFAFTREGIENACVEFDVETLRPTYRLLTGMPGASNAFAISRRLGLSEAAILRAQ 505
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
Q A A+ +V+ ++E K ++E R+ ++ R
Sbjct: 506 QFIKADHAQFEKVVNQLESEKL-----MYEQRNADIMERQ-------------------- 540
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
++V K+ + + + + +Q+ A Q + + +R R A + + K +
Sbjct: 541 -QRVAKLEEKTQALKDEIREKKEQMLKKARQESANLVRRT---RREAEEIIKSLKAQFDD 596
Query: 758 HVLTSNFQ--QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ S + Q +K++ A S + + K + VGD+V+V +K TV
Sbjct: 597 LGIESRRRAMQEAREKLQEAAERSRTGLLPGKAYKEKIDMQKLAVGDVVYVRKLDQKATV 656
Query: 816 IKVEPSKEEIVVQVGNMKWIMKFTD 840
+K++ + I VQ+G++K +K D
Sbjct: 657 LKIQGAN--IEVQLGSLKTYVKAGD 679
>gi|256847954|ref|ZP_05553398.1| DNA mismatch repair protein MutS2 [Lactobacillus coleohominis
101-4-CHN]
gi|256715014|gb|EEU29991.1| DNA mismatch repair protein MutS2 [Lactobacillus coleohominis
101-4-CHN]
Length = 791
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 146/407 (35%), Positives = 218/407 (53%), Gaps = 51/407 (12%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI + + R +VITGPNTGGKTI LKT+GL +M +SG I ++E +++ FD+VFA
Sbjct: 317 VPNDIQLGDQYRTIVITGPNTGGKTITLKTLGLIQLMGQSGFFIPANEGSQITIFDNVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQSL Q+LSTFSGH++ + I+ Q T +SLVLLDE+GAGT+P EG AL M++L
Sbjct: 377 DIGDEQSLEQNLSTFSGHMENVKRILEQITERSLVLLDELGAGTDPKEGAALAMAILNQI 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ GS + I TTH+ ELK + NA MEFD +PTY+++ GVPG+S+ I IA+
Sbjct: 437 QQVGSEVVI-TTHYPELKVYGFERPQTINASMEFDVDTFQPTYRLMLGVPGQSNGIAIAQ 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK---- 680
RLGL V+ +A+ L S ++N +I E+ + Q E+ + R +++ N K
Sbjct: 496 RLGLASTVINDAQSLVKDDSQKLNAMIGELVEQRKQAREN--QERLAKLVAENQQKATDL 553
Query: 681 ----NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARS--LVH 734
N +R L A R + +++DA A ++H Q +Q + L+
Sbjct: 554 EQKLNRFNEQRDDLYEKA--RMQANHQVADAKRKADRIIHHLRQMEVQRGTQIKENELID 611
Query: 735 KRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
+ Q +LH P + V++ KQ +K
Sbjct: 612 AQGQ------LNALH-----------------------RDPRLKRNKVLQRAKQKHNLK- 641
Query: 795 TELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+GD V V S+G+ GT+I + K + VQ+G +K + D+
Sbjct: 642 -----IGDAVKVKSYGQVGTLI-AKRGKHQWEVQLGILKMAIDERDL 682
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 138/303 (45%), Gaps = 20/303 (6%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLR-LLDETNAAIEMQK-HGS 111
L +LE+ +L H F ++ G+E L QL + QT +++ +++ET A ++ + G
Sbjct: 6 LEILEYQRLKHMAVPFLASAAGQEE-LEQL--VPQTDLKTVQTMVEETTDAADINRIVGP 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ L+ ++ ++ +R + L E + +LQ + L++ D I
Sbjct: 63 IPVPA----LANIRPQLKRLRVQASLNGTELAQIAKVLQTT----LAMNNFFDRLRDDQI 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L Q++ QL + K +++ VDEDG +KD AS L R + E ++ Q ++
Sbjct: 115 DLRRLYQVVEQLVTIPEVTKRLLKSVDEDGRVKDEASSKLHGLRQLIATTETEIRQALEK 174
Query: 232 LIRNENNESLFLEVSSI---HGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
R E+ +L + I + R I A S F G++ S+SG IEP + V +
Sbjct: 175 YTRGR--EAKYLSDTIITMRNDRYVIPVEAHYRSRFGGVVHDQSASGQTLYIEPQNVVEI 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L+QA+ + VL L+ + EI + LD VNA+A + T
Sbjct: 233 NNRLRQAQIEERQEVRRVLAELSALIAPYRKEIANNERLLGHLDFVNAKARLATKMHATL 292
Query: 347 PNI 349
P I
Sbjct: 293 PVI 295
>gi|422849469|ref|ZP_16896145.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK115]
gi|325689443|gb|EGD31448.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK115]
Length = 777
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 148/390 (37%), Positives = 217/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLSELIVSHAQEQTDTDS-DVNRII---ERLEEQKL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V + S
Sbjct: 525 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIVD-------LALS 577
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
++ S++ K LH K ++ + Q + P T S K +K
Sbjct: 578 ESESILKK------------LHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 622 QA---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 9/182 (4%)
Query: 182 QLFVNRSLIKSI---MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENN 238
+LF N ++ + +Q V++ G I+ AS +L + R ++Q E ++ +++ +++N+
Sbjct: 119 RLFENLAVFPKLQGSLQAVNDGGFIESFASESLSRIRRKIQENENQVREILQEILKNKGE 178
Query: 239 ESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQAR 294
V+S +GR + T +++S G++ S+SG IEP + V LN+E+ +R
Sbjct: 179 MLADQVVASRNGRNVLPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSR 236
Query: 295 ASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQD 354
A + +L L++ + EI I LD+V A+ + G P++ QD
Sbjct: 237 ADERYEIQRILQELSDLFRPHAAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQD 296
Query: 355 MK 356
++
Sbjct: 297 IQ 298
>gi|386715018|ref|YP_006181341.1| DNA mismatch repair protein MutS [Halobacillus halophilus DSM 2266]
gi|384074574|emb|CCG46067.1| DNA mismatch repair protein MutS [Halobacillus halophilus DSM 2266]
Length = 781
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 185/634 (29%), Positives = 299/634 (47%), Gaps = 94/634 (14%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGRE--ATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
L VLE+ K+ +S A +SLG+E A L + + + L DE + ++ H
Sbjct: 6 LHVLEYKKIIDQLSEHAASSLGKEKAAALKPSSKLEEVKEWQLET-DEAAQVLRLKGH-- 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ L G+ +K +++ L E+L V + + L+ + A + +
Sbjct: 63 --VPLGGI--FDIKPSLKRTTIGGILSALESLDVASTIYGGRQLKRFIEEAEEPE----- 113
Query: 172 RFMP-LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
MP L +++ + + L +SI +DE G++ D AS L+ R +V+ E ++ MD
Sbjct: 114 --MPKLREIVTGILPLKELEQSIRSCIDEHGNVMDGASDKLRTIRSRVRTYESRVRDKMD 171
Query: 231 MLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
+++ V+ + R + + G ++ SSSG IEP S V LN+
Sbjct: 172 SFTKSKTKMLSDAIVTIRNERYVLPVKQEYRGAIGGIVHDQSSSGATLFIEPQSVVDLNN 231
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
+LQ+AR E +L L+E++ + + + + +D + ARA
Sbjct: 232 QLQEARVQEKHEIEKILKELSEEIADHYSALYENVTRLGHVDFMFARAK----------- 280
Query: 349 IFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408
L + MK S+ S E I + +A HPL+ ++
Sbjct: 281 --LGKQMKASM---------PSMNDEGRIKMLQARHPLINEEE----------------- 312
Query: 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGK 468
+ P++++ I +VITGPNTGGK
Sbjct: 313 --------------------VVPNDIE---------------IGEDYTSIVITGPNTGGK 337
Query: 469 TICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528
T+ LK VGL +MA+SGL I + + ++ F+ V+ADIGDEQS+ QSLSTFS H+ I +
Sbjct: 338 TVTLKLVGLCTLMAQSGLQIPALDGCEMAVFEEVYADIGDEQSIEQSLSTFSSHMTNIVD 397
Query: 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588
I+ ++LVL DE+GAGT+P EG AL MS+L+ + + IATTH+ ELK Y+
Sbjct: 398 ILKHVDDKTLVLFDELGAGTDPQEGAALAMSILDEVVNRNARV-IATTHYPELKAYGYNR 456
Query: 589 DFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEIN 648
+ NA +EFD LKPTY++L GVPGRS+A I+ +LGL V+ +A++ G S +
Sbjct: 457 EGVINASVEFDIQTLKPTYRLLIGVPGRSNAFEISRKLGLHESVITSAQEKIGVDSQSVE 516
Query: 649 EVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
+I +E K + EA L +++L L
Sbjct: 517 NMIASLEESKRGAEQDYEEAERLLQEAQDLRNEL 550
>gi|417901588|ref|ZP_12545464.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21266]
gi|341845427|gb|EGS86629.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21266]
Length = 782
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/384 (35%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + K+ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKKKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|421144927|ref|ZP_15604829.1| DNA mismatch repair protein mutS [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|395488694|gb|EJG09547.1| DNA mismatch repair protein mutS [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 778
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 145/417 (34%), Positives = 226/417 (54%), Gaps = 45/417 (10%)
Query: 435 QVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL 486
++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA SG+
Sbjct: 297 EILSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMALSGI 356
Query: 487 HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGA 546
I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE+G+
Sbjct: 357 PIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDELGS 416
Query: 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPT 606
GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L PT
Sbjct: 417 GTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTLSPT 475
Query: 607 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVH 666
Y++L G+PG S+A+ IA+R+GLP ++ AR + ++ E +IE + K+Q L+ +
Sbjct: 476 YRLLVGIPGESNALTIAQRMGLPESIISKARAYISEDNKKV-EKMIENIKTKSQELDEMR 534
Query: 667 E--ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCP 724
E AR L+ +I A Q ++K + I +S ++ + +
Sbjct: 535 ERFAR-------------LQEEARIDRERAKQETLIIEKQKN--EIIKSAYEEAEKMMNE 579
Query: 725 SASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVK 784
++A +LV K ++ ++ KN ++L++ ++ VE VVK
Sbjct: 580 MRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VVK 627
Query: 785 DIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
IK K VGD V V S + ++K+ SKE VQ G +K + F +I
Sbjct: 628 KIKTKVNFK------VGDRVFVKSINQFANILKINTSKESASVQAGILKLEVPFDEI 678
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 10/154 (6%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L + + F E ++ G
Sbjct: 133 INKTINPEKEIKDDASLDLRDIRLHKRTLNMNIKRKFEELFEEPSLSNAFQERIITERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
L + E ++ + D+I + ++ LD++NA++ Y+
Sbjct: 250 LRIAELLRNNKDDILTIGEKVMYLDILNAKSIYA 283
>gi|255975938|ref|ZP_05426524.1| DNA mismatch repair protein mutS [Enterococcus faecalis T2]
gi|307278476|ref|ZP_07559550.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0860]
gi|255968810|gb|EET99432.1| DNA mismatch repair protein mutS [Enterococcus faecalis T2]
gi|306504819|gb|EFM74015.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0860]
Length = 788
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 221/386 (57%), Gaps = 28/386 (7%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFADIG
Sbjct: 320 DIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 380 DEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSLGAK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++RLG
Sbjct: 440 GAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISKRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
L +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L +
Sbjct: 499 LDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKEAYQ 558
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
E +R +++QK K A ++ A + + ++++ + Q
Sbjct: 559 VFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLESGQ- 602
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVS 807
+ G +H L +T + ++ H T + K+ K + K + GD V V+
Sbjct: 603 ----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEVIVN 652
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMK 833
++G++GT++K + K + VQ+G +K
Sbjct: 653 TYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|171779241|ref|ZP_02920212.1| hypothetical protein STRINF_01089 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282297|gb|EDT47724.1| MutS2 family protein [Streptococcus infantarius subsp. infantarius
ATCC BAA-102]
Length = 778
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 145/394 (36%), Positives = 217/394 (55%), Gaps = 46/394 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ + V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + +KV F+
Sbjct: 307 LINPVANDLHFLDELTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSKVAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I +I++ + SLVL+DE+GAGT+P EG +L +S+
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTNIVDILAAADKDSLVLVDELGAGTDPQEGASLAISI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + + T+ATTH+ ELK +F ENA MEFD L PTY + GVPGRS+A
Sbjct: 427 LEHLRLT-QVKTMATTHYPELKAYGIETEFVENASMEFDTETLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
I RLGL ++V A +L + ++N +I +E E HE+R L + + +
Sbjct: 486 EIVRRLGLAEVIVNEAERLTDS-DTDVNRIIERLE-------EQTHESRKRLDHIKEVEQ 537
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ L+ R + + K +++ A+A A+ +V K+ + S ++L HK + L
Sbjct: 538 DNLKFNRAVKKLYNEFSHAKDKELEKASAKAQEIVDKA---MAESEEILKNLHHKAS--L 592
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+P H K+Q + K+ S + V + R P V
Sbjct: 593 KP------HEVIEAKSQ-----------LKKLAPEVDLSKNKVLKKAKKLRA-----PRV 630
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
GD + V+++G++GT+I Q N KW
Sbjct: 631 GDDIIVTAYGQRGTLIN----------QTKNGKW 654
>gi|422685288|ref|ZP_16743509.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX4000]
gi|315029974|gb|EFT41906.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX4000]
Length = 788
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 221/386 (57%), Gaps = 28/386 (7%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFADIG
Sbjct: 320 DIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 380 DEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSLGAK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++RLG
Sbjct: 440 GAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISKRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
L +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L +
Sbjct: 499 LDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKEAYQ 558
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
E +R +++QK K A ++ A + + ++++ + Q
Sbjct: 559 VFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLESGQ- 602
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVS 807
+ G +H L +T + ++ H T + K+ K + K + GD V V+
Sbjct: 603 ----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEVIVN 652
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMK 833
++G++GT++K + K + VQ+G +K
Sbjct: 653 TYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|421078676|ref|ZP_15539628.1| MutS2 protein [Pelosinus fermentans JBW45]
gi|392523253|gb|EIW46427.1| MutS2 protein [Pelosinus fermentans JBW45]
Length = 787
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 152/223 (68%), Gaps = 2/223 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPIDIFI + L+ITGPNTGGKT+ LKT+GL +M ++GL+I +++ F+++FA
Sbjct: 315 VPIDIFIGKDFNTLLITGPNTGGKTVTLKTLGLFALMTQAGLYIPVQNGSEIAVFNNIFA 374
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ + I++Q +S+ LVL+DEIGAGT+P EG AL MS+LE
Sbjct: 375 DIGDEQSIEQSLSTFSAHMTNLVRILNQISSEDLVLIDEIGAGTDPDEGAALAMSILEHL 434
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ TIATTH+ ELKT YS ENA +EFD L+PTY++L GVPG S+A I++
Sbjct: 435 LNIGA-KTIATTHYSELKTFAYSRQGIENASVEFDIQTLRPTYRLLIGVPGSSNAFAISK 493
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
RLGL +++ A Q AE V+ +E K + + +HE
Sbjct: 494 RLGLSDRIIEQASQFIDKDHAEFETVLNALEEQKIAY-DKLHE 535
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 114/235 (48%), Gaps = 21/235 (8%)
Query: 124 VKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIM-- 181
+++ ++ S L P+E +AV + L S ++ + MP+T +I+
Sbjct: 71 IRTLLKRAEIGSVLAPDELVAVASTLYASRRMKN------------FFMDMPVTLIILLG 118
Query: 182 ---QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENN 238
++ V R++ I +V+E G I+D AS L R ++++ + ++ +D ++R+
Sbjct: 119 YAEKINVLRNVENFIENIVNEQGQIRDDASVELLHVRREIRLSQSRIKDKLDGILRSSEY 178
Query: 239 ESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQAR 294
+ F + V+ + R I + + F G++ S+SG +EP++ V LN+E++Q
Sbjct: 179 QKYFQDALVTVRNERYVIPIKQEYRNHFPGIIHDQSASGATVFVEPMAVVILNNEIKQLT 238
Query: 295 ASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
++ E +L + TE++ + I + + +D A+A SL+ + P I
Sbjct: 239 SAEKNEIERILRSATEQIANVSETIYMNCDMLANIDFAFAKAKLSLTMQASMPII 293
>gi|258423813|ref|ZP_05686699.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A9635]
gi|418888936|ref|ZP_13443072.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1524]
gi|257846045|gb|EEV70073.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A9635]
gi|377754446|gb|EHT78355.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1524]
Length = 782
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/384 (35%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
L+ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 LIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|94544645|gb|ABF34693.1| DNA mismatch repair protein mutS [Streptococcus pyogenes MGAS10270]
Length = 818
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 220/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ + +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 346 LSNPVANDLHFDQDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 405
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 406 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 465
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S ++ T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 466 LEHLRLS-NIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 524
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 525 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 578
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 579 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 625
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 626 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 666
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 667 ARAPRIGDDIIVTSYGQRGTL 687
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 105 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 157
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 158 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERQVRQILQDMLKE 214
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 215 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 269
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 270 EITQLRADERHEESRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPE 329
Query: 349 I 349
I
Sbjct: 330 I 330
>gi|427439526|ref|ZP_18924181.1| DNA mismatch repair protein MutS [Pediococcus lolii NGRI 0510Q]
gi|425788362|dbj|GAC44969.1| DNA mismatch repair protein MutS [Pediococcus lolii NGRI 0510Q]
Length = 514
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 186/597 (31%), Positives = 286/597 (47%), Gaps = 107/597 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQT--YQDSLRLLDETNAAIEMQKHGS 111
L VLE++K+ +V F T G + L QL + T Q++L+ ET
Sbjct: 7 LEVLEYEKVKIAVKQFIATENGAKE-LRQLVPMTDTAKVQNALK---ET----------- 51
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQL-----SLRAAIKED 166
L V++ VKS I R P + L + A+L E Q+ + R I
Sbjct: 52 ----LDAVNIYRVKSGIPIPRLEDIDEPLQRLKIDAILNGREIAQIGRVLRATREVINFF 107
Query: 167 ADL---YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
ADL + L ++ QL + + + ++ +G + +SAS L++ R + +E
Sbjct: 108 ADLPDTEVTVETLNGVVDQLETIPEIEERLNSSIEGNGHLLNSASSELRRIRAAITRVEG 167
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEP 280
++ Q M+ R + L + +I R I AD S F G++ SSSG +EP
Sbjct: 168 EIRQRMEKFTRGSQAKYLSEPIVTIRSERYVIPVRADSRSRFGGVVHDQSSSGQTLYVEP 227
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
+ V LN++L+Q + + E+ +L L+ + +D ++ + LD++NA+A Y+
Sbjct: 228 EAVVDLNNQLRQEQVAEVHEEQRILQELSALIAPYVDTLKDNSKVLGHLDLLNAKAQYAH 287
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
T P ++S++ R I L +A HPL
Sbjct: 288 KLKATEP-------------------QISTNNR---INLRQARHPL-------------- 311
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
+ P ++ VP DI + + LVI
Sbjct: 312 ----------------------------IDPKKV----------VPNDIRLGGEYSTLVI 333
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKTI LKTVGL +MA+SG+ I ++E + V F+ +FADIGDEQS+ Q+LSTFS
Sbjct: 334 TGPNTGGKTITLKTVGLLQLMAQSGMFIPANENSTVRVFEEIFADIGDEQSIEQNLSTFS 393
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H+ +I+ +SL L DE+GAGT+P EG AL +++L+ + G+ +I TTH+ E
Sbjct: 394 SHMDNTIHILEHLNERSLALFDELGAGTDPKEGAALAIAILDRVRQRGA-ASITTTHYPE 452
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
LKT Y NA MEFD L+PTYK+L G+PG+S+A I+ RLGL ++ AR
Sbjct: 453 LKTYGYERSGTINASMEFDVDTLQPTYKLLLGIPGQSNAFEISRRLGLDEDIITQAR 509
>gi|421527538|ref|ZP_15974138.1| DNA mismatch repair protein mutS [Fusobacterium nucleatum ChDC
F128]
gi|402256316|gb|EJU06798.1| DNA mismatch repair protein mutS [Fusobacterium nucleatum ChDC
F128]
Length = 778
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 142/418 (33%), Positives = 224/418 (53%), Gaps = 41/418 (9%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S ++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNREILSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILGAVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEKKA-KSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ AR + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESIISKARAYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ E L L + + I+E ++ I +S ++ + +
Sbjct: 532 EMRERFARLQEEARLDRERAKQETLIIEKQKNE-------------IIKSAYEEAEKMMN 578
Query: 724 PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVV 783
++A +LV K ++ ++ KN ++L++ ++ VE VV
Sbjct: 579 EMRAKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VV 626
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K IK K GD V V S + ++K+ SKE VQ G +K + F +I
Sbjct: 627 KKIKTKVDFK------AGDRVFVKSINQFANILKINTSKESASVQAGILKLEVPFDEI 678
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 10/154 (6%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L + + F E ++ G
Sbjct: 133 INKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFEEPSLSNAFQEKIITERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
L + E ++ + D+I + ++ LD++NA++ Y+
Sbjct: 250 LRIAELLRNNRDDILTIGEKVMYLDILNAKSIYA 283
>gi|418925376|ref|ZP_13479278.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG2018]
gi|377744445|gb|EHT68422.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG2018]
Length = 782
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSSNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|418891775|ref|ZP_13445890.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1176]
gi|377731107|gb|EHT55164.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1176]
Length = 782
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 218/386 (56%), Gaps = 38/386 (9%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKNADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQK--ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGK 755
F+ +K I DA K+ Q++ + +A ++ K +QLR + ++
Sbjct: 562 FQNYEKSLIEDAK-------EKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELID 613
Query: 756 NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ L +++ K IKQ+ + ++ + GD V V S+G+KG V
Sbjct: 614 KKKRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEV 656
Query: 816 IKVEPSKEEIVVQVGNMKWIMKFTDI 841
+++ + EE +VQ+G +K + D+
Sbjct: 657 LEI-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|384135955|ref|YP_005518669.1| MutS2 family protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339290040|gb|AEJ44150.1| MutS2 family protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 779
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 137/397 (34%), Positives = 216/397 (54%), Gaps = 36/397 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + + R+L+ITGPNTGGKT+ LKT+GL +M SGL + + + + + VF
Sbjct: 316 VPIDVELGDRFRLLIITGPNTGGKTVTLKTIGLLTLMGMSGLFLPTKRESDIGFCRHVFV 375
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ Q+LSTFS H+++I +++ + T SLVLLDE+GAGT+P EG+AL +++L+
Sbjct: 376 DIGDEQSIEQNLSTFSSHMRRIIDMLERVTPDSLVLLDELGAGTDPAEGSALAIAILDHL 435
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK + N ENA MEFD L+PTY++L GVPGRS+A+ IAE
Sbjct: 436 TSVGARV-VATTHYAELKGYAFRNPAAENASMEFDVETLRPTYRLLMGVPGRSNALAIAE 494
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLG+P +++ AR ++ + ++I ++E + EA L +R+ +L R
Sbjct: 495 RLGMPKEILERARSHVAESNIHVEDLIGKLEAASREAERMRDEAERALREARDQAADLAR 554
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ A+ K AA AR ++ ++ ++ + RSL + +A
Sbjct: 555 QK-------AAWEASKDSMREQAAREAREVIERARREADAVIREIRSLRDR-------AA 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
+ ++ K ++T PA R R E+ G V
Sbjct: 601 VKDHELVELRKRLEAAEPGEKRT-------PAR-------------RRMRAEV-RPGQRV 639
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V S G+KG V++V VVQ+G M+ + +D+
Sbjct: 640 RVLSLGQKGDVVEVAQDGRAAVVQLGAMRMKVDASDL 676
Score = 43.1 bits (100), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 137/310 (44%), Gaps = 34/310 (10%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGR-EATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
+L LE++ + ++ A+TSLG+ A + + + + L LDE A+ M +
Sbjct: 8 ALDALEYEAVRDEIAKCAQTSLGQARARAMEPFPVRADAEAELARLDE---AVRML-YRV 63
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEA-------LAVVALLQFSETLQLSLRAAIK 164
+ G++ SL + ++ +R L +EA + A+ QF E RAA
Sbjct: 64 GAPPFAGIE-SLAE-VVKRAQRGGTLSADEANRLARCIAGMRAMRQFVE------RAAEG 115
Query: 165 EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
D F L + + R + I QVVDEDG + D ASP L + R + + E +
Sbjct: 116 GD------FPLLASTVAPMADLRRTEQEIRQVVDEDGQVVDHASPTLLRLRDEKRRREAE 169
Query: 225 LYQLMDMLIRNENNESLFLEVSSIHGR---LCIRTGADQLS-FKGLLLS-SSSGIGSVIE 279
+ +D L+R + +L+ I R C+ + S G++ SSSG IE
Sbjct: 170 IRAALDRLLRTQAK---YLQEPVIAMRGEHYCLPVRVEHKSQIPGIVRDVSSSGSTVFIE 226
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
P + V L++ +++ + E +L L + D+ + L+ ++D V A+A Y+
Sbjct: 227 PRTIVELSERVRELEVLEEREVERLLYQLAAAVAQVADDFLRTLDVAAEVDFVFAKAAYA 286
Query: 340 LSFGGTSPNI 349
G P +
Sbjct: 287 RRVDGKRPRL 296
>gi|339442882|ref|YP_004708887.1| MutS-like ATPase involved in mismatch repair, family 1 [Clostridium
sp. SY8519]
gi|338902283|dbj|BAK47785.1| MutS-like ATPase involved in mismatch repair, family 1 [Clostridium
sp. SY8519]
Length = 792
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/401 (32%), Positives = 217/401 (54%), Gaps = 35/401 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + VLV+TGPNTGGKT+ LKTVGL +M ++G+HI +++ +++ FD VFA
Sbjct: 317 VPIDVSLGEDYHVLVVTGPNTGGKTVSLKTVGLLTLMGQAGMHIPAADRSQLAVFDEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ + +I Q SLVL DE+ AGT+P EG AL +S+L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHITNMVSIFRQMNPNSLVLFDELCAGTDPNEGAALAISILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G + T+ATTH+ E+K S + ENA EFD L PTY+++ GVPG+S+A I++
Sbjct: 437 RSRG-IRTMATTHYSEMKIYALSTEGVENASCEFDVETLSPTYRLVTGVPGKSNAFAISQ 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGLP ++ ARQ + +VI ++E+ + + + + + + L
Sbjct: 496 RLGLPESLIDGARQRLSQEAESFEDVIADLEQSRHTIEQEQQQIARYKTEIETMKEELAE 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+R K+ R+ + I++A ++ A Q+ +A+ + ++ R
Sbjct: 556 SRNKL-------EARRDKLIAEA--------NEEAAQIL---REAKEVADDTIRKFRKYG 597
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPN---VG 801
L + K++ + + + V+ K+ +++ ++P +G
Sbjct: 598 KNGLDAAAMEKDREKVRKQLDKANRNAVQ-------------KKKQKIENHQVPKKLMIG 644
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
D V V S KGTV + K +++VQ+G +++ + D+V
Sbjct: 645 DSVKVLSMNLKGTVHTLPNEKGDLMVQMGILRYKVNIRDLV 685
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 143/310 (46%), Gaps = 44/310 (14%)
Query: 57 LEWDKLCHSVSSFARTSLGREAT-----LTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
LE+DK+ ++ +A + GRE +T L I + ++ +A + K G
Sbjct: 9 LEYDKIIQRLTEYATSDGGREMCQRLKPMTDLGRIRRGQTET------ADAFARLLKSGK 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
LT L K++++ + L E LAV LL+ + + + +ED
Sbjct: 63 ----LTFSGLKNPKASMKRLEIGGVLNTAELLAVSRLLRIAAKAKAYGKPE-RED----- 112
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDE----DGSIKDSASPALKQSRGQVQMLERKLYQ 227
+P T + +LF + + + +D + I D ASP L+Q R + + +++
Sbjct: 113 --LP-TDSLQELFDRLEPVPGLAEEIDRCILAEDEISDDASPKLRQIRRTINGMSERIHS 169
Query: 228 LMDMLIRNENNESLFLE---VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLS 282
++ ++ N + ++L+ V+ GR C+ A+ + G++ SSSG IEP+S
Sbjct: 170 ALNRIV-NSSAGRIYLQDPIVTMRSGRYCLPVKAEYKAQIPGMVHDQSSSGNTLFIEPVS 228
Query: 283 AVPLNDELQQARASVTKAEE-DVLLALTEKMQVDLDE----IEKMLNGIIQLDVVNARAT 337
V LN+EL++ + +AEE DV+LA ++ D E I++ LD + A+
Sbjct: 229 VVKLNNELRE--TYLKEAEEIDVILA---RLSSDTAEYSAQIQEDFITCRLLDFIFAKGR 283
Query: 338 YSLSFGGTSP 347
Y+ + G +P
Sbjct: 284 YAQAINGMAP 293
>gi|293500954|ref|ZP_06666805.1| MutS2 protein [Staphylococcus aureus subsp. aureus 58-424]
gi|291095959|gb|EFE26220.1| MutS2 protein [Staphylococcus aureus subsp. aureus 58-424]
Length = 780
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 218/386 (56%), Gaps = 38/386 (9%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKNADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQK--ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGK 755
F+ +K I DA K+ Q++ + +A ++ K +QLR + ++
Sbjct: 562 FQNYEKSLIEDAK-------EKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELID 613
Query: 756 NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ L +++ K IKQ+ + ++ + GD V V S+G+KG V
Sbjct: 614 KKKRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEV 656
Query: 816 IKVEPSKEEIVVQVGNMKWIMKFTDI 841
+++ + EE +VQ+G +K + D+
Sbjct: 657 LEI-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|257425195|ref|ZP_05601621.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 55/2053]
gi|257427858|ref|ZP_05604256.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 65-1322]
gi|257430493|ref|ZP_05606875.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 68-397]
gi|257433255|ref|ZP_05609613.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus E1410]
gi|257436094|ref|ZP_05612141.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus M876]
gi|282910719|ref|ZP_06318522.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282913919|ref|ZP_06321706.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus M899]
gi|282918842|ref|ZP_06326577.1| MutS2 protein [Staphylococcus aureus subsp. aureus C427]
gi|282923964|ref|ZP_06331640.1| MutS2 protein [Staphylococcus aureus subsp. aureus C101]
gi|293526498|ref|ZP_06671183.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus M1015]
gi|417889008|ref|ZP_12533107.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21195]
gi|257272171|gb|EEV04303.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 55/2053]
gi|257274699|gb|EEV06186.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 65-1322]
gi|257278621|gb|EEV09240.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 68-397]
gi|257281348|gb|EEV11485.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus E1410]
gi|257284376|gb|EEV14496.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus M876]
gi|282313936|gb|EFB44328.1| MutS2 protein [Staphylococcus aureus subsp. aureus C101]
gi|282316652|gb|EFB47026.1| MutS2 protein [Staphylococcus aureus subsp. aureus C427]
gi|282321987|gb|EFB52311.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus M899]
gi|282325324|gb|EFB55633.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus WBG10049]
gi|290920570|gb|EFD97633.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus M1015]
gi|341853076|gb|EGS93958.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21195]
Length = 782
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 218/386 (56%), Gaps = 38/386 (9%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKNADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQK--ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGK 755
F+ +K I DA K+ Q++ + +A ++ K +QLR + ++
Sbjct: 562 FQNYEKSLIEDAK-------EKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELID 613
Query: 756 NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ L +++ K IKQ+ + ++ + GD V V S+G+KG V
Sbjct: 614 KKKRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEV 656
Query: 816 IKVEPSKEEIVVQVGNMKWIMKFTDI 841
+++ + EE +VQ+G +K + D+
Sbjct: 657 LEI-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|49483307|ref|YP_040531.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus MRSA252]
gi|282903692|ref|ZP_06311580.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus C160]
gi|282905461|ref|ZP_06313316.1| MutS2 protein [Staphylococcus aureus subsp. aureus Btn1260]
gi|282908435|ref|ZP_06316266.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|283957887|ref|ZP_06375338.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus A017934/97]
gi|295427631|ref|ZP_06820263.1| MutS2 protein [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297591415|ref|ZP_06950053.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus MN8]
gi|415684425|ref|ZP_11449554.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus CGS00]
gi|418566423|ref|ZP_13130804.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21264]
gi|418581975|ref|ZP_13146053.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1605]
gi|418595208|ref|ZP_13158829.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21342]
gi|418602382|ref|ZP_13165788.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21345]
gi|418897682|ref|ZP_13451752.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIGC341D]
gi|418900552|ref|ZP_13454609.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1214]
gi|418908854|ref|ZP_13462859.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG149]
gi|418916937|ref|ZP_13470896.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1267]
gi|418922724|ref|ZP_13476641.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1233]
gi|418982055|ref|ZP_13529763.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1242]
gi|418985723|ref|ZP_13533409.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1500]
gi|56749238|sp|Q6GHU1.1|MUTS2_STAAR RecName: Full=MutS2 protein
gi|49241436|emb|CAG40120.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
subsp. aureus MRSA252]
gi|282328100|gb|EFB58382.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282330753|gb|EFB60267.1| MutS2 protein [Staphylococcus aureus subsp. aureus Btn1260]
gi|282595310|gb|EFC00274.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus C160]
gi|283790036|gb|EFC28853.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus A017934/97]
gi|295127989|gb|EFG57623.1| MutS2 protein [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297576301|gb|EFH95017.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus MN8]
gi|315193814|gb|EFU24209.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus CGS00]
gi|371970636|gb|EHO88053.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21264]
gi|374396082|gb|EHQ67333.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21345]
gi|374402075|gb|EHQ73118.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21342]
gi|377703020|gb|EHT27336.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1214]
gi|377704336|gb|EHT28645.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1242]
gi|377705541|gb|EHT29845.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1500]
gi|377710385|gb|EHT34623.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1605]
gi|377736047|gb|EHT60077.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1233]
gi|377750111|gb|EHT74049.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1267]
gi|377754850|gb|EHT78756.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG149]
gi|377760717|gb|EHT84593.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIGC341D]
Length = 782
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 218/386 (56%), Gaps = 38/386 (9%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKNADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQK--ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGK 755
F+ +K I DA K+ Q++ + +A ++ K +QLR + ++
Sbjct: 562 FQNYEKSLIEDAK-------EKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELID 613
Query: 756 NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ L +++ K IKQ+ + ++ + GD V V S+G+KG V
Sbjct: 614 KKKRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEV 656
Query: 816 IKVEPSKEEIVVQVGNMKWIMKFTDI 841
+++ + EE +VQ+G +K + D+
Sbjct: 657 LEI-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|422728993|ref|ZP_16785399.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0012]
gi|315150623|gb|EFT94639.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0012]
Length = 788
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 222/389 (57%), Gaps = 28/389 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFA
Sbjct: 317 VANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 GAKGAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L
Sbjct: 496 RLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKE 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ E +R +++QK K A ++ A + + ++++ +
Sbjct: 556 AYQVFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLES 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
Q + G +H L +T + ++ H T + K+ K + K + GD V
Sbjct: 601 GQ-----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEV 649
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
V+++G++GT++K + K + VQ+G +K
Sbjct: 650 IVNTYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P +
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEV 295
>gi|392428087|ref|YP_006469098.1| DNA mismatch repair protein [Streptococcus intermedius JTH08]
gi|419776965|ref|ZP_14302883.1| MutS2 family protein [Streptococcus intermedius SK54]
gi|383845176|gb|EID82580.1| MutS2 family protein [Streptococcus intermedius SK54]
gi|391757233|dbj|BAM22850.1| DNA mismatch repair protein [Streptococcus intermedius JTH08]
Length = 777
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 148/387 (38%), Positives = 214/387 (55%), Gaps = 40/387 (10%)
Query: 436 VSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS 490
+ L + HP V D++ A +VITGPNTGGKTI LKT+GLA +MA+SGL IL+
Sbjct: 297 IRLLHVTHPLIENAVANDLYFASDLTEIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILA 356
Query: 491 SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 550
++V FD +FADIGDEQS+ QSLSTFS H+ I I+ Q +LVLLDE+GAGT+P
Sbjct: 357 DNGSRVGIFDQIFADIGDEQSIEQSLSTFSSHMTNIVAILEQVDENALVLLDELGAGTDP 416
Query: 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKIL 610
EG AL M++LE + T+ATTH+ ELK +NA MEFD L+PTY+ +
Sbjct: 417 QEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIEMAGVQNASMEFDTASLRPTYRFM 475
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
GVPGRS+A+ IA RLGL +VV++A++ S ++N +I ER + Q L E+R
Sbjct: 476 QGVPGRSNALEIARRLGLSELVVRHAQEQTNTDS-DVNRII---ERLEEQTL----ESRK 527
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
L R + + L+ R + + K +++ A A+ +V L S S+
Sbjct: 528 RLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSESE-- 580
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
S ++LH K ++ + Q + P T S K +KQ+
Sbjct: 581 ------------SILKNLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLKQA- 623
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVIK 817
K+ P VGD + V+S+G++GT++K
Sbjct: 624 --KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 39.7 bits (91), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 96/187 (51%), Gaps = 7/187 (3%)
Query: 190 IKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIH 249
++ ++Q ++E G ++ AS L + R ++Q E ++ ++ +++ + + + V+S +
Sbjct: 130 LQGLLQAINEGGFVESFASDNLARIRRKIQENEVQVRDILQDILKTKGDMLVDQVVASRN 189
Query: 250 GRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
GR + T +++S G++ S+SG IEP + V LN+E+ A+A +L
Sbjct: 190 GRNVLPVKNTFRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEITNAQADERHEILRIL 247
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK-RSLTHEPV 364
L+++++ + EI I LD+V A+ + G P + +D++ +TH +
Sbjct: 248 QELSDRIRPHIAEIANNAWIIGHLDLVRAKVCFMQERGAVVPMLSDSKDIRLLHVTHPLI 307
Query: 365 TSKVSSS 371
+ V++
Sbjct: 308 ENAVAND 314
>gi|450003296|ref|ZP_21826128.1| putative DNA mismatch repair protein [Streptococcus mutans N29]
gi|449182673|gb|EMB84686.1| putative DNA mismatch repair protein [Streptococcus mutans N29]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 174/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|154499931|ref|ZP_02037969.1| hypothetical protein BACCAP_03588 [Bacteroides capillosus ATCC
29799]
gi|150271529|gb|EDM98786.1| MutS2 family protein [Pseudoflavonifractor capillosus ATCC 29799]
Length = 791
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 202/672 (30%), Positives = 314/672 (46%), Gaps = 102/672 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HG 110
+S+ LE ++ ++ A T G+E + L + D RL ET AA+ M G
Sbjct: 7 KSIHTLELPRVLEKLAEQAVTEEGKERAMA-LRPLTDA-DDVQRLQAETTAAVNMTALRG 64
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
S +L +GV V ++++ L E L + A+L+ + + + AA + +
Sbjct: 65 SPAL--SGV--KPVAASLQRADMGGALNTRELLDIAAVLRAARSARDY--AAGENNGKTC 118
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I + L NR L I + + I DSASP L R ++ K+ ++
Sbjct: 119 I-----DHLFASLTANRFLEDKITGSILGENEIADSASPELASIRRHIRATSAKVRDILQ 173
Query: 231 MLIRNENNESL---FLEVSSIHGRLCIRTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
LI + + L + + S + +R+ GL+ SSSG IEP+ V
Sbjct: 174 KLISSSQAKYLQEPIITMRSDRYVVPVRSECKN-DVPGLVHDVSSSGGTFFIEPMGVVKA 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+EL++ +A K + +L L+ ++I + + +I LDV+ ARA S
Sbjct: 233 NNELRELQADEEKEIDRILAELSADCAAHKEDIAQDYDLLIMLDVIFARAKLSY------ 286
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
R EP K+ S I L +A HPLL
Sbjct: 287 ----------RMRASEP---KIVS----RGICLRQARHPLL------------------- 310
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTG 466
D N V D+++ LVITGPNTG
Sbjct: 311 -------------------DPN--------------KAVANDLYLGGDFDTLVITGPNTG 337
Query: 467 GKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526
GKT+ LKT+GL +MA+ GLHI ++ + V FD V +DIGDEQS++QSLSTFS H+ I
Sbjct: 338 GKTVTLKTIGLLTLMAQCGLHIPVADDSTVMIFDRVLSDIGDEQSIAQSLSTFSSHMVNI 397
Query: 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586
I+ ++ ++L+L DE+GAGT+P+EG AL +++E E G+L+ ATTH+ ELK
Sbjct: 398 VGILKEADDKTLILFDELGAGTDPIEGAALAAAIIEQSRELGALVA-ATTHYAELKVYAM 456
Query: 587 SNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAE 646
+ ENA EFD L PTY++L G+PG+S+A I+ERLGLP V+ A A +
Sbjct: 457 TTAGVENASCEFDVNSLAPTYRLLIGIPGKSNAFAISERLGLPKEVIDKASARIDAENVR 516
Query: 647 INEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISD 706
+VI +E+ + Q + +AR R ++ RT R+ + +R + V+K
Sbjct: 517 FEDVITRLEQQRQQMEQEKDQARKL----RREMEDSARTAREYRDKLEKERAKAVEK--- 569
Query: 707 AAAIARSLVHKS 718
A A AR+++ ++
Sbjct: 570 AQAEARAILDEA 581
>gi|422880185|ref|ZP_16926649.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK1059]
gi|422930209|ref|ZP_16963148.1| DNA mismatch repair protein MutS [Streptococcus sanguinis ATCC
29667]
gi|422930801|ref|ZP_16963732.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK340]
gi|332364761|gb|EGJ42530.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK1059]
gi|339614189|gb|EGQ18900.1| DNA mismatch repair protein MutS [Streptococcus sanguinis ATCC
29667]
gi|339620777|gb|EGQ25345.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK340]
Length = 777
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 148/390 (37%), Positives = 216/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
+L+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 LLADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLKQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLSEVIVGHAQEQTDTDS-DVNRII---ERLEEQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S ++LH K ++ + Q + P T S K +K
Sbjct: 580 E--------------SILKNLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 622 QA---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 42.7 bits (99), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 9/182 (4%)
Query: 182 QLFVNRSLIKSI---MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENN 238
+LF N ++ + +Q V++ G I+ AS +L + R ++Q E ++ +++ +++N+
Sbjct: 119 RLFENLAVFPKLQGSLQAVNDGGFIESFASESLSRIRRKIQENENQVREILQEILKNKGE 178
Query: 239 ESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQAR 294
V+S +GR + T +++S G++ S+SG IEP + V LN+E+ +R
Sbjct: 179 MLADQVVASRNGRNVLPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSR 236
Query: 295 ASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQD 354
A + +L L++ + EI I LD+V A+ + G P++ QD
Sbjct: 237 ADERYEIQRILQELSDLFRPHAAEIANNAWIIGHLDLVCAKVRFMQETGAVVPDLSEEQD 296
Query: 355 MK 356
++
Sbjct: 297 IQ 298
>gi|379795514|ref|YP_005325512.1| MutS2 protein [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356872504|emb|CCE58843.1| MutS2 protein [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 782
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 136/384 (35%), Positives = 218/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIIMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + ++ Q
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLTK------QYHQYQN 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
+ K I DA K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 565 YEK-SLIEDAK-------EKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ ++EE +VQ+G +K + D+
Sbjct: 659 I-VNEEEAIVQMGIIKMKLPIDDL 681
>gi|302871595|ref|YP_003840231.1| MutS2 family protein [Caldicellulosiruptor obsidiansis OB47]
gi|302574454|gb|ADL42245.1| MutS2 family protein [Caldicellulosiruptor obsidiansis OB47]
Length = 786
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 143/410 (34%), Positives = 221/410 (53%), Gaps = 55/410 (13%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + ++ VLVITGPNTGGKT+ LKT+GL ++A+SG+ I + + ++V F +FA
Sbjct: 313 VPIDVHLGKEFDVLVITGPNTGGKTVTLKTIGLFCLLAQSGVFIPADDRSEVCVFSKIFA 372
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+K I I + S +LVLLDEIG+GT+P EG AL ++L+
Sbjct: 373 DIGDEQSIIQSLSTFSAHMKNIIEITQNADSSTLVLLDEIGSGTDPEEGAALAKAILKFL 432
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+GELKT + FENA EFD LKPTY++L G+PG S+A+ I+
Sbjct: 433 HNKGAKV-VATTHYGELKTFAQQEERFENASCEFDINTLKPTYRLLIGIPGMSNALYISS 491
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVH-------EARHFLMLSRN 677
LGL +++ A+ + E+ ++I EMER + + E + EA
Sbjct: 492 NLGLNKEIIELAKGYMSKKTLELTDIINEMERKRRELEEALESANKLKSEAEELKKTLEE 551
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
+ ++KI E + + VQK+ D V K
Sbjct: 552 ERRRFEAEKQKIKERASKEAREFVQKVEDE-------------------------VEKLF 586
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVK---R 794
++L+ A +SL ++ + ++E ++VK I+Q+ R + +
Sbjct: 587 KELKKIA-ESLK---------------EKEMLKQLEEKKREYENLVKSIEQASRKEEKLQ 630
Query: 795 TELPN---VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
++LP +G V+V SF +G V + SK + V++G MK + +DI
Sbjct: 631 SKLPENLRLGQKVYVKSFDAEGFVESLPDSKGNLTVRIGIMKLSVNISDI 680
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 154/302 (50%), Gaps = 22/302 (7%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTY-QDSLRLLDETNAAIEMQKHG 110
++ + LE+D++ + +FA + ++ + S ++ + Q L ++E I + K+G
Sbjct: 4 KTFKALEYDRVLEMLINFAHSEPAKKYFQNLIPSTDKDFIQKELDKVEE--CYIYILKYG 61
Query: 111 SC-SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ +L+ + D+SLV +++ + + L P+E LAV +L+ S+ ++ L A D +
Sbjct: 62 TPPALEFS--DISLV---LKKAKAQAILTPHEILAVNRILKLSQEVRSYLANA---DGNY 113
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
L +LF + L I Q I D+ASP LK R +++ LE K+ +
Sbjct: 114 ------LKSSRERLFNLKELTARIDQTFLTPEEILDTASPRLKDIRDRIRRLEAKIRDEL 167
Query: 230 DMLIRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
+ +IR+ + E + ++ G +L + A+ + S KG++ S++G +EP V
Sbjct: 168 NRMIRDPKIQRFLQEPIITVRGDKLLLPVKAEHKDSIKGIIHDQSATGATLFVEPFVCVE 227
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
++++++ AR+ + E +L L++ + +EI++ + +LD++ +A ++ F +
Sbjct: 228 ISNQIRVARSEEKEEIEKLLQELSQLISDSYNEIKQNFESLSELDILFTKAQWAHQFRAS 287
Query: 346 SP 347
P
Sbjct: 288 KP 289
>gi|449919980|ref|ZP_21798262.1| putative DNA mismatch repair protein MutS2 [Streptococcus mutans
1SM1]
gi|449159061|gb|EMB62445.1| putative DNA mismatch repair protein MutS2 [Streptococcus mutans
1SM1]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFTHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQEFLAVKRILQISAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|449960471|ref|ZP_21810666.1| putative DNA mismatch repair protein [Streptococcus mutans 4VF1]
gi|450137927|ref|ZP_21871898.1| putative DNA mismatch repair protein [Streptococcus mutans NLML1]
gi|449167477|gb|EMB70355.1| putative DNA mismatch repair protein [Streptococcus mutans 4VF1]
gi|449234624|gb|EMC33624.1| putative DNA mismatch repair protein [Streptococcus mutans NLML1]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.0 bits (110), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QIELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNIQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKVETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|450121273|ref|ZP_21866224.1| putative DNA mismatch repair protein [Streptococcus mutans ST6]
gi|449229366|gb|EMC28684.1| putative DNA mismatch repair protein [Streptococcus mutans ST6]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKTNKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|7387927|sp|Q9ZEH5.1|MUTS2_STAAU RecName: Full=MutS2 protein
gi|3776110|emb|CAA11403.1| MutS-like protein [Staphylococcus aureus]
Length = 719
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 218/386 (56%), Gaps = 38/386 (9%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 269 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 328
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 329 TFSSHMTNIVEILKNADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 387
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 388 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 447
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 448 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 498
Query: 698 FRKVQK--ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGK 755
F+ +K I DA K+ Q++ + +A ++ K +QLR + ++
Sbjct: 499 FQNYEKSLIEDAK-------EKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELID 550
Query: 756 NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ L +++ K IKQ+ + ++ + GD V V S+G+KG V
Sbjct: 551 KKKRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEV 593
Query: 816 IKVEPSKEEIVVQVGNMKWIMKFTDI 841
+++ + EE +VQ+G +K + D+
Sbjct: 594 LEI-VNDEEAIVQMGIIKMKLPIEDL 618
>gi|339300884|ref|ZP_08650011.1| DNA mismatch repair protein MutS [Streptococcus agalactiae ATCC
13813]
gi|319745675|gb|EFV97974.1| DNA mismatch repair protein MutS [Streptococcus agalactiae ATCC
13813]
Length = 782
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 220/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ + +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 310 LSNPVANDLHFDQDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 369
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 370 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 429
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S ++ T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 430 LEHLRLS-NIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 488
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 489 EIAFRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 542
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 543 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 589
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 590 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQIDLSKNKV--LNKAKKIKA 630
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 631 ARAPRIGDDIIVTSYGQRGTL 651
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 116/241 (48%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 69 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 121
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++D ASP L++ R Q+ ER++ Q++ DML
Sbjct: 122 RLFENLEQFPN---LQGSFQAINDGGFLEDFASPELERIRRQLTNSERRVRQILQDML-- 176
Query: 235 NENNESLFLE--VSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+ L E ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 177 -KEKAELLSENLIASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 233
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ ++ T P
Sbjct: 234 EITQLRADERHEESRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFTTDNKATIPE 293
Query: 349 I 349
I
Sbjct: 294 I 294
>gi|424787034|ref|ZP_18213805.1| mutS2 family protein [Streptococcus intermedius BA1]
gi|422114285|gb|EKU17992.1| mutS2 family protein [Streptococcus intermedius BA1]
Length = 777
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 148/387 (38%), Positives = 214/387 (55%), Gaps = 40/387 (10%)
Query: 436 VSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS 490
+ L + HP V D++ A +VITGPNTGGKTI LKT+GLA +MA+SGL IL+
Sbjct: 297 IRLLHVTHPLIENAVANDLYFASDLTEIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILA 356
Query: 491 SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 550
++V FD +FADIGDEQS+ QSLSTFS H+ I I+ Q +LVLLDE+GAGT+P
Sbjct: 357 DNGSRVGIFDQIFADIGDEQSIEQSLSTFSSHMTNIVAILEQVDENALVLLDELGAGTDP 416
Query: 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKIL 610
EG AL M++LE + T+ATTH+ ELK +NA MEFD L+PTY+ +
Sbjct: 417 QEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIEMAGVQNASMEFDTASLRPTYRFM 475
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
GVPGRS+A+ IA RLGL +VV++A++ S ++N +I ER + Q L E+R
Sbjct: 476 QGVPGRSNALEIARRLGLSELVVRHAQEQTNTDS-DVNRII---ERLEEQTL----ESRK 527
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
L R + + L+ R + + K +++ A A+ +V L S S+
Sbjct: 528 RLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSESE-- 580
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
S ++LH K ++ + Q + P T S K +KQ+
Sbjct: 581 ------------SILKNLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLKQA- 623
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVIK 817
K+ P VGD + V+S+G++GT++K
Sbjct: 624 --KKNRAPKVGDDILVTSYGQRGTLVK 648
>gi|34762391|ref|ZP_00143393.1| DNA mismatch repair protein mutS [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887973|gb|EAA25039.1| DNA mismatch repair protein mutS [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 718
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 141/415 (33%), Positives = 223/415 (53%), Gaps = 41/415 (9%)
Query: 435 QVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL 486
++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA SG+
Sbjct: 237 EILSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMALSGI 296
Query: 487 HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGA 546
I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE+G+
Sbjct: 297 PIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILEAVTKNSLVLLDELGS 356
Query: 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPT 606
GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L PT
Sbjct: 357 GTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTLSPT 415
Query: 607 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVH 666
Y++L G+PG S+A+ IA+R+GLP ++ AR + ++ E +IE + K+Q L+ +
Sbjct: 416 YRLLVGIPGESNALTIAQRMGLPESIISKARAYISEDNKKV-EKMIENIKTKSQELDEMR 474
Query: 667 EARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
E L + + + I+E ++ I +S ++ + +
Sbjct: 475 ERFARLQEEARIDRERAKQETLIIEKQKNE-------------IIKSAYEEAEKMMNEMR 521
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
++A +LV K ++ ++ KN ++L++ ++ VE VVK I
Sbjct: 522 AKASALVEK----IQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VVKKI 569
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K K VGD V V S + ++K+ SKE VQ G +K + F +I
Sbjct: 570 KTKVNFK------VGDRVFVKSINQFANILKINTSKESASVQAGILKLEVPFDEI 618
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 10/154 (6%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L + + F E ++ G
Sbjct: 73 INKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFEEPSLSNAFQEKIITERDG 132
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 133 RMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 189
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
L + E ++ + D+I + ++ LD++NA++ Y+
Sbjct: 190 LRIAELLRNNKDDILTIGEKVMYLDILNAKSIYA 223
>gi|450177566|ref|ZP_21886450.1| putative DNA mismatch repair protein [Streptococcus mutans SM1]
gi|449243530|gb|EMC41950.1| putative DNA mismatch repair protein [Streptococcus mutans SM1]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.0 bits (110), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 137/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRVVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIISNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|449991864|ref|ZP_21822066.1| putative DNA mismatch repair protein [Streptococcus mutans NVAB]
gi|449180548|gb|EMB82702.1| putative DNA mismatch repair protein [Streptococcus mutans NVAB]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.0 bits (110), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 137/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKRGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|306826722|ref|ZP_07460024.1| DNA mismatch repair protein MutS [Streptococcus pyogenes ATCC
10782]
gi|304431011|gb|EFM34018.1| DNA mismatch repair protein MutS [Streptococcus pyogenes ATCC
10782]
Length = 818
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 138/381 (36%), Positives = 220/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 346 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 405
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG++L M++
Sbjct: 406 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADRNSLVLFDELGAGTDPQEGSSLAMAI 465
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 466 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 524
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKT-QFLEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T + L+H+ E N
Sbjct: 525 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 578
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 579 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 625
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P ++ + Q + K+ S + V + ++ ++K
Sbjct: 626 NDKSQLKP--------------HEIIDAKVQ---IKKLAPQVDLSKNKV--LNKAKKIKA 666
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 667 ARAPRIGDDIIVTSYGQRGTL 687
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 105 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 157
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 158 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 214
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 215 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 269
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 270 EITQLRADERHEEGRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPK 329
Query: 349 I 349
I
Sbjct: 330 I 330
>gi|450036454|ref|ZP_21835503.1| putative DNA mismatch repair protein [Streptococcus mutans M21]
gi|449193995|gb|EMB95363.1| putative DNA mismatch repair protein [Streptococcus mutans M21]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.4 bits (111), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 139/322 (43%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNIQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQ-LFVNRSLIKSI---MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ LF + + +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKVEMFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLSENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|449896970|ref|ZP_21790028.1| putative DNA mismatch repair protein [Streptococcus mutans R221]
gi|449985259|ref|ZP_21819560.1| putative DNA mismatch repair protein [Streptococcus mutans NFSM2]
gi|449179346|gb|EMB81562.1| putative DNA mismatch repair protein [Streptococcus mutans NFSM2]
gi|449261294|gb|EMC58772.1| putative DNA mismatch repair protein [Streptococcus mutans R221]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 142/318 (44%), Gaps = 20/318 (6%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ E+ DL I
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELKDFYDNL--ENVDLQILD 118
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
++ ++F N ++ +Q +++ G I+D ASP L + R + E+++ Q++ ++
Sbjct: 119 CLFEKV--EMFPN---LQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQILQEML 173
Query: 234 RNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+ + + E+L ++S GR + + G++ S SG IEP + V LN+
Sbjct: 174 KKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVIHDISDSGNTVYIEPRAVVNLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ QARA +L L+++++ D I + +D V + Y + P+
Sbjct: 231 EMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQASLPS 290
Query: 349 IFLPQDMKRSLTHEPVTS 366
+ Q ++ P+ S
Sbjct: 291 LTTDQTIRLLSVRHPLLS 308
>gi|450162021|ref|ZP_21880732.1| putative DNA mismatch repair protein [Streptococcus mutans 66-2A]
gi|449237888|gb|EMC36687.1| putative DNA mismatch repair protein [Streptococcus mutans 66-2A]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 69/321 (21%), Positives = 138/321 (42%), Gaps = 26/321 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAVP 285
+++ + + L +E ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGD--LLVENLIASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVVN 227
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+E+ QARA +L L+++++ D I + +D V + Y +
Sbjct: 228 LNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQAS 287
Query: 346 SPNIFLPQDMKRSLTHEPVTS 366
P++ Q ++ P+ S
Sbjct: 288 LPSLTTDQTIRLLSVRHPLLS 308
>gi|397650425|ref|YP_006490952.1| DNA mismatch repair protein [Streptococcus mutans GS-5]
gi|449942440|ref|ZP_21806022.1| putative DNA mismatch repair protein [Streptococcus mutans 11A1]
gi|392603994|gb|AFM82158.1| putative DNA mismatch repair protein [Streptococcus mutans GS-5]
gi|449150536|gb|EMB54297.1| putative DNA mismatch repair protein [Streptococcus mutans 11A1]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 143/318 (44%), Gaps = 20/318 (6%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ E+ DL I
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELKDFYDNL--ENVDLQILD 118
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
++ ++F N ++ +Q +++ G I+D ASP L + R + E+++ Q++ ++
Sbjct: 119 CLFEKV--EMFPN---LQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQILQEML 173
Query: 234 RNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+ + + E+L ++S GR + + G++ S+SG IEP + V LN+
Sbjct: 174 KKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVIHDISASGNTVYIEPRAVVNLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ QARA +L L+++++ D I + +D V + Y + P+
Sbjct: 231 EMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQASLPS 290
Query: 349 IFLPQDMKRSLTHEPVTS 366
+ Q ++ P+ S
Sbjct: 291 LTTDQTIRLLSVRHPLLS 308
>gi|449974641|ref|ZP_21815392.1| putative DNA mismatch repair protein MutS2 [Streptococcus mutans
11VS1]
gi|449178151|gb|EMB80427.1| putative DNA mismatch repair protein MutS2 [Streptococcus mutans
11VS1]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFTHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVIHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|449888771|ref|ZP_21787401.1| putative DNA mismatch repair protein [Streptococcus mutans SA41]
gi|449903742|ref|ZP_21792312.1| putative DNA mismatch repair protein [Streptococcus mutans M230]
gi|449937037|ref|ZP_21804333.1| putative DNA mismatch repair protein [Streptococcus mutans 2ST1]
gi|449964658|ref|ZP_21811420.1| putative DNA mismatch repair protein [Streptococcus mutans 15VF2]
gi|450040620|ref|ZP_21836912.1| putative DNA mismatch repair protein [Streptococcus mutans T4]
gi|450077955|ref|ZP_21850736.1| putative DNA mismatch repair protein [Streptococcus mutans N3209]
gi|450156273|ref|ZP_21878651.1| putative DNA mismatch repair protein [Streptococcus mutans 21]
gi|449164848|gb|EMB67886.1| putative DNA mismatch repair protein [Streptococcus mutans 2ST1]
gi|449172224|gb|EMB74856.1| putative DNA mismatch repair protein [Streptococcus mutans 15VF2]
gi|449198759|gb|EMB99859.1| putative DNA mismatch repair protein [Streptococcus mutans T4]
gi|449210526|gb|EMC10980.1| putative DNA mismatch repair protein [Streptococcus mutans N3209]
gi|449236083|gb|EMC35014.1| putative DNA mismatch repair protein [Streptococcus mutans 21]
gi|449250943|gb|EMC48980.1| putative DNA mismatch repair protein [Streptococcus mutans SA41]
gi|449260649|gb|EMC58147.1| putative DNA mismatch repair protein [Streptococcus mutans M230]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 143/318 (44%), Gaps = 20/318 (6%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ E+ DL I
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELKDFYDNL--ENVDLQILD 118
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
++ ++F N ++ +Q +++ G I+D ASP L + R + E+++ Q++ ++
Sbjct: 119 CLFEKV--EMFPN---LQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQILQEML 173
Query: 234 RNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+ + + E+L ++S GR + + G++ S+SG IEP + V LN+
Sbjct: 174 KKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVVNLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ QARA +L L+++++ D I + +D V + Y + P+
Sbjct: 231 EMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQASLPS 290
Query: 349 IFLPQDMKRSLTHEPVTS 366
+ Q ++ P+ S
Sbjct: 291 LTTDQTIRLLSVRHPLLS 308
>gi|395242020|ref|ZP_10419020.1| MutS2 protein [Lactobacillus pasteurii CRBIP 24.76]
gi|394480768|emb|CCI85260.1| MutS2 protein [Lactobacillus pasteurii CRBIP 24.76]
Length = 786
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 218/790 (27%), Positives = 367/790 (46%), Gaps = 121/790 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L++LE++++ +++ A T + L Q N Y + L +T A M + G
Sbjct: 6 LKILEFERIQEQLAALAITKPAHD--LAQNLKPNSDYDQVQKSLKQTLALTNMLRLKGQL 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
L D + V+ + + ++ + L E ++ +L + + ++ ++E DL
Sbjct: 64 PL----TDFNSVEESTKRLKVKANLNAEELGNILLVLTLANEVNHYVQD-LEEKMDL--- 115
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
P+ ++ QL V +L + + D DG++ DSAS L + R ++ E ++ M+
Sbjct: 116 -GPVEAILNQLDVPLTLFNELKKAFDFDGTVLDSASSELARLRHDMRSNELEIKAKMESY 174
Query: 233 IRNENNESLFLEVSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDEL 290
+R V+ R I + + F G++ S+SG +EP + + LN+
Sbjct: 175 VRTSAKYLSEAIVTIRDDRYVIPVKQEYRGKFGGIVHDQSASGQTLFVEPEAVLNLNNRQ 234
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIF 350
Q A + +L L+ + +++ + ++ + + +LD + A+A + T P
Sbjct: 235 QNLLAQERQEIRRILKNLSALAREEIEPLNQISDSLTKLDFIQAKAKLAKQMKATEP--- 291
Query: 351 LPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELR 410
K+S ++ +I L KA HPL
Sbjct: 292 ----------------KLSDNQ---SISLLKARHPL------------------------ 308
Query: 411 RRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTI 470
+ P ++ V DI++ ++ITGPNTGGKTI
Sbjct: 309 ------------------IDPEKV----------VANDIYLGNDFDTMLITGPNTGGKTI 340
Query: 471 CLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 530
LKT GL +MA+SGL I + E +KV F+ +FADIGDEQS+ QSLSTFS H+ I I+
Sbjct: 341 TLKTAGLLQLMAQSGLFIPAQEGSKVGVFNEIFADIGDEQSIEQSLSTFSSHINDIVEIM 400
Query: 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590
++ +LVL+DEIGAGT+P EG +L +S+L+ S + + TTH+ ELK Y+
Sbjct: 401 KRAQGDTLVLIDEIGAGTDPEEGASLAISILDYLQSRNSKIMV-TTHYPELKLYGYNRPR 459
Query: 591 FENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEV 650
NA MEFD L PTY++ G+PG S+A IA RLG+ VV++A QL ++IN+
Sbjct: 460 TTNASMEFDLKSLSPTYRLQIGIPGHSNAFAIARRLGMREDVVKSAEQLMDDTDSDINK- 518
Query: 651 IIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAI 710
+IE F+T+ EA+ L +L R+R+ LE +K+ DA
Sbjct: 519 MIEQLNFQTK---KATEAK------TKLESSLARSRQ--LE----------KKLQDALDW 557
Query: 711 ARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVD 770
V K + A++ + K+A Q+ + + K ++ + + +++
Sbjct: 558 YNQRVQKQLEFAQERANEVVAKKRKKADQIIKQLEEQQKNGALIKQNKIIDAKGELNSLE 617
Query: 771 KVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVG 830
K E A++ V++ R KR NVGD V V S+G+ G V K + ++ VQ+G
Sbjct: 618 K-EANNLANNKVLQ------REKRRHHVNVGDQVKVLSYGQTGVVTK-KLTEHNYEVQMG 669
Query: 831 NMKWIMKFTD 840
+K +K TD
Sbjct: 670 IVK--VKVTD 677
>gi|450069047|ref|ZP_21847411.1| putative DNA mismatch repair protein [Streptococcus mutans NLML9]
gi|449205910|gb|EMC06637.1| putative DNA mismatch repair protein [Streptococcus mutans NLML9]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|449980753|ref|ZP_21817395.1| putative DNA mismatch repair protein MutS2 [Streptococcus mutans
5SM3]
gi|449176541|gb|EMB78883.1| putative DNA mismatch repair protein MutS2 [Streptococcus mutans
5SM3]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFTHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|449875347|ref|ZP_21782165.1| putative DNA mismatch repair protein [Streptococcus mutans S1B]
gi|449930543|ref|ZP_21802100.1| putative DNA mismatch repair protein [Streptococcus mutans 3SN1]
gi|449163467|gb|EMB66571.1| putative DNA mismatch repair protein [Streptococcus mutans 3SN1]
gi|449254014|gb|EMC51942.1| putative DNA mismatch repair protein [Streptococcus mutans S1B]
Length = 776
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQISAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|24380226|ref|NP_722181.1| DNA mismatch repair protein MutS2 [Streptococcus mutans UA159]
gi|449866442|ref|ZP_21779506.1| putative DNA mismatch repair protein MutS2 [Streptococcus mutans
U2B]
gi|449870843|ref|ZP_21780872.1| putative DNA mismatch repair protein MutS2 [Streptococcus mutans
8ID3]
gi|81744187|sp|Q8DSD1.1|MUTS2_STRMU RecName: Full=MutS2 protein
gi|24378234|gb|AAN59487.1|AE015013_6 putative DNA mismatch repair protein MutS2 [Streptococcus mutans
UA159]
gi|449155904|gb|EMB59392.1| putative DNA mismatch repair protein MutS2 [Streptococcus mutans
8ID3]
gi|449263739|gb|EMC61102.1| putative DNA mismatch repair protein MutS2 [Streptococcus mutans
U2B]
Length = 776
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFTHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVIHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|449880587|ref|ZP_21783931.1| putative DNA mismatch repair protein [Streptococcus mutans SA38]
gi|449924326|ref|ZP_21799566.1| putative DNA mismatch repair protein [Streptococcus mutans 4SM1]
gi|449951370|ref|ZP_21808656.1| putative DNA mismatch repair protein [Streptococcus mutans 11SSST2]
gi|450006865|ref|ZP_21827419.1| putative DNA mismatch repair protein [Streptococcus mutans NMT4863]
gi|450051153|ref|ZP_21840681.1| putative DNA mismatch repair protein [Streptococcus mutans NFSM1]
gi|449162912|gb|EMB66031.1| putative DNA mismatch repair protein [Streptococcus mutans 4SM1]
gi|449166273|gb|EMB69218.1| putative DNA mismatch repair protein [Streptococcus mutans 11SSST2]
gi|449187160|gb|EMB88956.1| putative DNA mismatch repair protein [Streptococcus mutans NMT4863]
gi|449202085|gb|EMC03034.1| putative DNA mismatch repair protein [Streptococcus mutans NFSM1]
gi|449252865|gb|EMC50834.1| putative DNA mismatch repair protein [Streptococcus mutans SA38]
Length = 776
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|450099879|ref|ZP_21858555.1| putative DNA mismatch repair protein [Streptococcus mutans SF1]
gi|450171907|ref|ZP_21884274.1| putative DNA mismatch repair protein [Streptococcus mutans SM4]
gi|449220695|gb|EMC20543.1| putative DNA mismatch repair protein [Streptococcus mutans SF1]
gi|449243318|gb|EMC41759.1| putative DNA mismatch repair protein [Streptococcus mutans SM4]
Length = 776
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|450111403|ref|ZP_21862684.1| putative DNA mismatch repair protein [Streptococcus mutans SM6]
gi|449223821|gb|EMC23487.1| putative DNA mismatch repair protein [Streptococcus mutans SM6]
Length = 776
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 139/322 (43%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNIQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQ-LFVNRSLIKSI---MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ LF + + +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKVEMFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|387785473|ref|YP_006250569.1| putative DNA mismatch repair protein [Streptococcus mutans LJ23]
gi|379131874|dbj|BAL68626.1| putative DNA mismatch repair protein [Streptococcus mutans LJ23]
Length = 776
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKVETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|290579799|ref|YP_003484191.1| DNA mismatch repair protein [Streptococcus mutans NN2025]
gi|449971700|ref|ZP_21814507.1| putative DNA mismatch repair protein [Streptococcus mutans 2VS1]
gi|450031639|ref|ZP_21833757.1| putative DNA mismatch repair protein [Streptococcus mutans G123]
gi|450059517|ref|ZP_21843461.1| putative DNA mismatch repair protein [Streptococcus mutans NLML4]
gi|450091332|ref|ZP_21855429.1| putative DNA mismatch repair protein [Streptococcus mutans W6]
gi|450150889|ref|ZP_21876777.1| putative DNA mismatch repair protein [Streptococcus mutans 14D]
gi|450167765|ref|ZP_21882661.1| putative DNA mismatch repair protein [Streptococcus mutans B]
gi|254996698|dbj|BAH87299.1| putative DNA mismatch repair protein [Streptococcus mutans NN2025]
gi|449171703|gb|EMB74353.1| putative DNA mismatch repair protein [Streptococcus mutans 2VS1]
gi|449191452|gb|EMB92939.1| putative DNA mismatch repair protein [Streptococcus mutans G123]
gi|449203002|gb|EMC03883.1| putative DNA mismatch repair protein [Streptococcus mutans NLML4]
gi|449219516|gb|EMC19481.1| putative DNA mismatch repair protein [Streptococcus mutans W6]
gi|449232827|gb|EMC31922.1| putative DNA mismatch repair protein [Streptococcus mutans 14D]
gi|449238142|gb|EMC36922.1| putative DNA mismatch repair protein [Streptococcus mutans B]
Length = 776
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|384867975|ref|YP_005748171.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus TCH60]
gi|312438480|gb|ADQ77551.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus TCH60]
Length = 782
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 217/386 (56%), Gaps = 38/386 (9%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKNADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQK--ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGK 755
F+ +K I DA K+ Q++ + +A ++ K +QLR + ++
Sbjct: 562 FQNYEKSLIEDAK-------EKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELID 613
Query: 756 NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ L +++ K IKQ+ + ++ + GD V V S+G+KG V
Sbjct: 614 KKKRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEV 656
Query: 816 IKVEPSKEEIVVQVGNMKWIMKFTDI 841
+++ KE I VQ+G +K + D+
Sbjct: 657 LEIVNDKEAI-VQMGIIKMKLPIEDL 681
>gi|417899642|ref|ZP_12543544.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21259]
gi|341844570|gb|EGS85782.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21259]
Length = 688
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|288906127|ref|YP_003431349.1| Mismatch repair ATPase (MutS family) [Streptococcus gallolyticus
UCN34]
gi|386338568|ref|YP_006034737.1| DNA mismatch repair protein MutS2 [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
gi|288732853|emb|CBI14432.1| Mismatch repair ATPase (MutS family) [Streptococcus gallolyticus
UCN34]
gi|334281204|dbj|BAK28778.1| DNA mismatch repair protein MutS2 [Streptococcus gallolyticus
subsp. gallolyticus ATCC 43143]
Length = 778
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 221/397 (55%), Gaps = 37/397 (9%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L PV D+ + V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + +KV F+
Sbjct: 307 LIDPVANDLHFLNELTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSKVAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + SLVL+DE+GAGT+P EG +L +++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTNIVEILAAADKDSLVLVDELGAGTDPQEGASLAIAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + T+ATTH+ ELK +F ENA MEFD L PTY + GVPGRS+A
Sbjct: 427 LEHL-RLMEIKTMATTHYPELKAYGIETEFVENASMEFDTETLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A +L + ++N +I +E E HE+R L + + +
Sbjct: 486 EIARRLGLAEIIVNEAERLTD-SDTDVNRIIERLE-------EQTHESRKRLDHIKEVEQ 537
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ L+ R + + K +++ A+A A+ +V K+ + S ++L H RA L
Sbjct: 538 DNLKFNRAVKKLYNEFSHAKDKELEKASAKAQEIVDKA---MAESEEILKNL-HDRA-SL 592
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+P H K+Q + K+ S + V + R P V
Sbjct: 593 KP------HEVIEAKSQ-----------LKKLAPEVDLSKNKVLKKAKKLRA-----PRV 630
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
GD + V+++G++GT++ + + VQVG +K +K
Sbjct: 631 GDDIVVTAYGQRGTLVN-QGKNGKWEVQVGLIKMTLK 666
>gi|418312639|ref|ZP_12924148.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21334]
gi|365238284|gb|EHM79121.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21334]
Length = 782
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVKKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|350567081|ref|ZP_08935686.1| DNA mismatch repair protein MutS [Peptoniphilus indolicus ATCC
29427]
gi|348659744|gb|EGY76471.1| DNA mismatch repair protein MutS [Peptoniphilus indolicus ATCC
29427]
Length = 766
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 137/397 (34%), Positives = 220/397 (55%), Gaps = 44/397 (11%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPIDI + + L+ITGPNTGGKT+ +KT+GL +MA+ GLHI + E +++ FD V A
Sbjct: 318 VPIDISLGGEFTSLIITGPNTGGKTVSIKTLGLLTLMAQYGLHIPTMENSEIAIFDKVLA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I+ + T +SLV+ DE+GAGT+P EG AL S+++ F
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVEILKEITPKSLVIFDELGAGTDPTEGAALARSIMD-F 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ I+TTH+ +LK S D +NA MEF+ L PTYK+L GVPG+S+A I+
Sbjct: 437 MLRRKIRCISTTHYNQLKLYALSTDGVQNASMEFNVDTLSPTYKLLIGVPGKSNAFEISR 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR-------HFLMLSRN 677
+LGLP I++++A+++ + E EV+ +E+ +T+ E+ A +
Sbjct: 497 KLGLPDIIIRDAKKMISEDNIEFEEVLSSIEKDRTRIEEYKQAAEIESLEYKKKNEKLKK 556
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
+ L + R K+LE + R V + + + + + +Q+ +++QAR L + A
Sbjct: 557 EIEKLNQEREKVLEKAREEANRLVLTTRENMELVINELSELREQM--NSAQARKL--QEA 612
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL 797
Q L + +S KN+ VL + V+ ++K
Sbjct: 613 QDLYRESFKSAQ----KKNEFVLEK----------------ADEVIGELK---------- 642
Query: 798 PNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
VG+ V +S +G V+++ SK ++++Q+G +K
Sbjct: 643 --VGETVRSTSLNSEGVVLELPDSKNQVLLQMGMLKM 677
>gi|334138498|ref|ZP_08511917.1| recombination and DNA strand exchange inhibitor protein
[Paenibacillus sp. HGF7]
gi|333604147|gb|EGL15542.1| recombination and DNA strand exchange inhibitor protein
[Paenibacillus sp. HGF7]
Length = 825
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 210/397 (52%), Gaps = 33/397 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + +++TGPNTGGKT+ LKTVGL +MA SGL + + E +++ FD +FA
Sbjct: 356 VPIDLELGGSFTTIIVTGPNTGGKTVSLKTVGLLSLMAMSGLFVPAEEGSELCVFDGIFA 415
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I+ T +SLVLLDE+GAGT+P EG+AL +SLLE
Sbjct: 416 DIGDEQSIEQSLSTFSSHMTNIIGILRDMTPKSLVLLDELGAGTDPAEGSALAISLLENI 475
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G + IATTH+ ELK + NA MEFD L PTY++L GVPGRS+A IAE
Sbjct: 476 HRMGCRM-IATTHYSELKAYAFERRGVINASMEFDVQTLSPTYRLLVGVPGRSNAFAIAE 534
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGLP ++ AR + +I +E + H A + L L
Sbjct: 535 RLGLPRAIIDKARGQVSDEDQRVETMIASLEENRLTAEAERHSAEQIRRENEELRAALSA 594
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
R K+ E + ++ DA A AR + A+++ + R L + A ++
Sbjct: 595 ERAKLDEQRDKVLLKAEREAQDAIAKAR----REAEEII---ADLRRLAKEEAGAIK--- 644
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
H L + ++ +D+ E + K + P + E+ GD V
Sbjct: 645 ------------DHKLIAARRR--LDEAE------PKLRKPGAKRPERSKAEV-EPGDEV 683
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V S G+KG V+++ S E+ VQ+G MK + TD+
Sbjct: 684 RVVSLGQKGHVVEIVNSS-EVTVQLGIMKMKVNKTDL 719
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 136/304 (44%), Gaps = 18/304 (5%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNA-AIEMQKHG 110
++ +E+ K+ H +SS A TSLG A + + LRL A A++ K G
Sbjct: 43 KTFNTMEFHKITHKLSSHAATSLG-TAKAAEAKPSGDFEEVKLRLQATDEAFAVDRLKGG 101
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
+ G+ +++A+ R L P+E L + + L+ L ++
Sbjct: 102 AP---FGGI--RDIRAAVHRARVGGMLNPSELLDIATTIYGGRRLRKFLETMDEQHP--- 153
Query: 171 IRFMPLTQMIMQLFV-NRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+P+ +L N+ I +D++ ++ DSAS L + R +++ E ++ + +
Sbjct: 154 ---VPMLLSWAELLSDNKDTEDRIKSCIDDNAAVMDSASGELSRVRSELRTGEARVREKL 210
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
+ +IRN + + + + V+ R I + + SF G++ S+SG IEP + V
Sbjct: 211 EQMIRNPSVQKMLQDALVTMRGDRYVIPVKQEYRSSFGGMIHDQSASGATLFIEPEAVVT 270
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ +++ + E +L LT ++ +++ + + QLD A+A + T
Sbjct: 271 LNNRIRELKFKEEAEVEKILRMLTSQVAEIEEDLLSDVELLAQLDFTFAKAGLAREMKAT 330
Query: 346 SPNI 349
P +
Sbjct: 331 LPKL 334
>gi|253733620|ref|ZP_04867785.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
subsp. aureus TCH130]
gi|253728419|gb|EES97148.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
subsp. aureus TCH130]
Length = 782
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLSIEDL 681
>gi|282916393|ref|ZP_06324155.1| MutS2 protein [Staphylococcus aureus subsp. aureus D139]
gi|283770204|ref|ZP_06343096.1| MutS2 protein [Staphylococcus aureus subsp. aureus H19]
gi|282319833|gb|EFB50181.1| MutS2 protein [Staphylococcus aureus subsp. aureus D139]
gi|283460351|gb|EFC07441.1| MutS2 protein [Staphylococcus aureus subsp. aureus H19]
Length = 782
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 218/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ ++EE +VQ+G +K + D+
Sbjct: 659 I-VNEEEAIVQMGIIKMKLPIEDL 681
>gi|386363351|ref|YP_006072682.1| mutS2 family protein [Streptococcus pyogenes Alab49]
gi|350277760|gb|AEQ25128.1| mutS2 family protein [Streptococcus pyogenes Alab49]
Length = 779
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 307 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 486 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 540 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 586
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 587 NDKSQLKP------HEIIDAKAQ-----------IKKLASQVDLSKNKV--LNKAKKIKA 627
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 628 ARAPRIGDDIIVTSYGQRGTL 648
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 66 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSEM-------IHFYSDLDNVSFQSLD 118
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 119 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 175
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 176 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 231 EITQLRADERHEEGRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPK 290
Query: 349 I 349
I
Sbjct: 291 I 291
>gi|325979090|ref|YP_004288806.1| DNA mismatch repair protein mutS [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|325179018|emb|CBZ49062.1| DNA mismatch repair protein mutS [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 778
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 221/397 (55%), Gaps = 37/397 (9%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ + V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + +KV F+
Sbjct: 307 LTNPVANDLHFLNELTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSKVAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + SLVL+DE+GAGT+P EG +L +++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTNIVEILAAADKDSLVLVDELGAGTDPQEGASLAIAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + T+ATTH+ ELK +F ENA MEFD L PTY + GVPGRS+A
Sbjct: 427 LEHL-RLMEIKTMATTHYPELKAYGIETEFVENASMEFDTETLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A +L + ++N +I +E E HE+R L + + +
Sbjct: 486 EIARRLGLAEIIVNEAERLTD-SDTDVNRIIERLE-------EQTHESRKRLDHIKEVEQ 537
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ L+ R + + K +++ A+A A+ +V K+ + S ++L H RA L
Sbjct: 538 DNLKFNRAVKKLYNEFSHAKDKELEKASAKAQEIVDKA---MAESEEILKNL-HDRA-SL 592
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+P H K+Q + K+ S + V + R P V
Sbjct: 593 KP------HEVIEAKSQ-----------LKKLAPEVDLSKNKVLKKAKKIRA-----PRV 630
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
GD + V+++G++GT+I + + QVG +K +K
Sbjct: 631 GDDIVVTAYGQRGTLIS-QGKNGKWEAQVGLIKMTLK 666
>gi|374338716|ref|YP_005095433.1| Recombination inhibitory protein MutS2 [Streptococcus macedonicus
ACA-DC 198]
gi|372284833|emb|CCF03137.1| Recombination inhibitory protein MutS2 [Streptococcus macedonicus
ACA-DC 198]
Length = 778
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 221/397 (55%), Gaps = 37/397 (9%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L PV D+ + V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + +KV F+
Sbjct: 307 LIDPVANDLHFLNELTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSKVAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + SLVL+DE+GAGT+P EG +L +++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTNIVEILAAADKDSLVLVDELGAGTDPQEGASLAIAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + T+ATTH+ ELK +F ENA MEFD L PTY + GVPGRS+A
Sbjct: 427 LEHL-RLMEIKTMATTHYPELKAYGIETEFVENASMEFDTETLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A +L + ++N +I +E E HE+R L + + +
Sbjct: 486 EIARRLGLAEIIVNEAERLTD-SDTDVNRIIERLE-------EQTHESRKRLDHIKEVEQ 537
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ L+ R + + K +++ A+A A+ +V K+ + S ++L H RA L
Sbjct: 538 DNLKFNRAVKKLYNEFSHAKDKELEKASAKAQEIVDKA---IAESEEILKNL-HDRA-SL 592
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+P H K+Q + K+ S + V + R P V
Sbjct: 593 KP------HEVIEAKSQ-----------LKKLAPEVDLSKNKVLKKAKKLRA-----PRV 630
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
GD + V+++G++GT++ + + VQVG +K +K
Sbjct: 631 GDDIVVTAYGQRGTLVN-QGKNGKWEVQVGLIKMTLK 666
>gi|450010575|ref|ZP_21828759.1| putative DNA mismatch repair protein [Streptococcus mutans A19]
gi|450024329|ref|ZP_21831183.1| putative DNA mismatch repair protein [Streptococcus mutans U138]
gi|450114681|ref|ZP_21863454.1| putative DNA mismatch repair protein [Streptococcus mutans ST1]
gi|449190075|gb|EMB91679.1| putative DNA mismatch repair protein [Streptococcus mutans A19]
gi|449192120|gb|EMB93553.1| putative DNA mismatch repair protein [Streptococcus mutans U138]
gi|449228899|gb|EMC28246.1| putative DNA mismatch repair protein [Streptococcus mutans ST1]
Length = 776
Score = 219 bits (558), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 172/297 (57%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKDLQDKAQLKP 594
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 143/318 (44%), Gaps = 20/318 (6%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ E+ DL I
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELKDFYDNL--ENVDLQILD 118
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
++ ++F N ++ +Q +++ G I+D ASP L + R + E+++ Q++ ++
Sbjct: 119 CLFEKV--EMFPN---LQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQILQEML 173
Query: 234 RNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+ + + E+L ++S GR + + G++ S+SG IEP + V LN+
Sbjct: 174 KKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVVNLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ QARA +L L+++++ D I + +D V + Y + P+
Sbjct: 231 EMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQASLPS 290
Query: 349 IFLPQDMKRSLTHEPVTS 366
+ Q ++ P+ S
Sbjct: 291 LTTDQTIRLLSVRHPLLS 308
>gi|449995959|ref|ZP_21823277.1| putative DNA mismatch repair protein [Streptococcus mutans A9]
gi|449183955|gb|EMB85922.1| putative DNA mismatch repair protein [Streptococcus mutans A9]
Length = 776
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 172/297 (57%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKDLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 139/322 (43%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNIQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQ-LFVNRSLIKSI---MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ LF + + +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKVEMFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMARILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRKNQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|229550105|ref|ZP_04438830.1| MutS family DNA mismatch repair protein [Enterococcus faecalis ATCC
29200]
gi|255972883|ref|ZP_05423469.1| DNA mismatch repair protein mutS [Enterococcus faecalis T1]
gi|257422707|ref|ZP_05599697.1| MutS2 family protein [Enterococcus faecalis X98]
gi|312952408|ref|ZP_07771283.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0102]
gi|384518505|ref|YP_005705810.1| mutS2 protein [Enterococcus faecalis 62]
gi|422693114|ref|ZP_16751129.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0031]
gi|422706763|ref|ZP_16764461.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0043]
gi|422726956|ref|ZP_16783399.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0312]
gi|229304809|gb|EEN70805.1| MutS family DNA mismatch repair protein [Enterococcus faecalis ATCC
29200]
gi|255963901|gb|EET96377.1| DNA mismatch repair protein mutS [Enterococcus faecalis T1]
gi|257164531|gb|EEU94491.1| MutS2 family protein [Enterococcus faecalis X98]
gi|310629792|gb|EFQ13075.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0102]
gi|315152573|gb|EFT96589.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0031]
gi|315155852|gb|EFT99868.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0043]
gi|315157981|gb|EFU01998.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0312]
gi|323480638|gb|ADX80077.1| mutS2 protein [Enterococcus faecalis 62]
Length = 788
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 221/389 (56%), Gaps = 28/389 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFA
Sbjct: 317 VANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 GAKGAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L
Sbjct: 496 RLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKE 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ E +R +++QK K A ++ A + + ++++ +
Sbjct: 556 AYQVFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLES 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
Q + G +H L +T + ++ H T + K+ K + K + GD V
Sbjct: 601 GQ-----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEV 649
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
V+++G++GT++K K + VQ+G +K
Sbjct: 650 IVNTYGQRGTLLKGN-GKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|450046743|ref|ZP_21839126.1| putative DNA mismatch repair protein [Streptococcus mutans N34]
gi|449198456|gb|EMB99569.1| putative DNA mismatch repair protein [Streptococcus mutans N34]
Length = 776
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 173/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDLVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 137/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKVETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRVVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|423071359|ref|ZP_17060133.1| MutS2 protein [Streptococcus intermedius F0413]
gi|355363833|gb|EHG11568.1| MutS2 protein [Streptococcus intermedius F0413]
Length = 777
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 147/389 (37%), Positives = 215/389 (55%), Gaps = 44/389 (11%)
Query: 436 VSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS 490
+ L + HP V D++ A +VITGPNTGGKTI LKT+GLA +MA+SGL IL+
Sbjct: 297 IRLLHVTHPLIENAVANDLYFASDLTEIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILA 356
Query: 491 SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 550
++V FD +FADIGDEQS+ QSLSTFS H+ I I+ Q +LVLLDE+GAGT+P
Sbjct: 357 DNGSRVGIFDQIFADIGDEQSIEQSLSTFSSHMTNIVAILEQVDENALVLLDELGAGTDP 416
Query: 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKIL 610
EG AL M++LE + T+ATTH+ ELK +NA MEFD L+PTY+ +
Sbjct: 417 QEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIEMAGVQNASMEFDTASLRPTYRFM 475
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
GVPGRS+A+ IA RLGL +VV++A++ S ++N +I ER + Q LE +
Sbjct: 476 QGVPGRSNALEIARRLGLSELVVRHAQEQTNTDS-DVNRII---ERLEEQTLESRKRLDN 531
Query: 671 FLMLSR-NLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA-SQ 728
+ + NL N R +K+ +R ++ K AQ++ A S+
Sbjct: 532 IREVEQENLKFN--RALKKLYNEFNRERETELNK-----------ARLEAQEIVDLALSE 578
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
+ S++ ++LH K ++ + Q + P T S K +KQ
Sbjct: 579 SESIL------------KNLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLKQ 622
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
+ K+ P VGD + V+S+G++GT++K
Sbjct: 623 A---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 39.7 bits (91), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 96/187 (51%), Gaps = 7/187 (3%)
Query: 190 IKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIH 249
++ ++Q ++E G ++ AS L + R ++Q E ++ ++ +++ + + + V+S +
Sbjct: 130 LQGLLQAINEGGFVESFASDNLARIRRKIQENEVQVRDILQDILKTKGDMLVDQVVASRN 189
Query: 250 GRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
GR + T +++S G++ S+SG IEP + V LN+E+ A+A +L
Sbjct: 190 GRNVLPVKNTFRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEITNAQADERHEILRIL 247
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK-RSLTHEPV 364
L+++++ + EI I LD+V A+ + G P + +D++ +TH +
Sbjct: 248 QELSDRIRPHIAEIANNAWIIGHLDLVRAKVCFMQERGAVVPMLSDSKDIRLLHVTHPLI 307
Query: 365 TSKVSSS 371
+ V++
Sbjct: 308 ENAVAND 314
>gi|256958895|ref|ZP_05563066.1| MutS 2 protein [Enterococcus faecalis DS5]
gi|257078926|ref|ZP_05573287.1| MutS 2 protein [Enterococcus faecalis JH1]
gi|294780084|ref|ZP_06745460.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis PC1.1]
gi|307271106|ref|ZP_07552389.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX4248]
gi|397699794|ref|YP_006537582.1| mutS2 protein [Enterococcus faecalis D32]
gi|422708383|ref|ZP_16765911.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0027]
gi|422718757|ref|ZP_16775408.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0017]
gi|256949391|gb|EEU66023.1| MutS 2 protein [Enterococcus faecalis DS5]
gi|256986956|gb|EEU74258.1| MutS 2 protein [Enterococcus faecalis JH1]
gi|294452836|gb|EFG21262.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis PC1.1]
gi|306512604|gb|EFM81253.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX4248]
gi|315033806|gb|EFT45738.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0017]
gi|315036891|gb|EFT48823.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecalis TX0027]
gi|397336433|gb|AFO44105.1| mutS2 protein [Enterococcus faecalis D32]
Length = 788
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 221/389 (56%), Gaps = 28/389 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFA
Sbjct: 317 VANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 GAKGAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L
Sbjct: 496 RLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKE 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ E +R +++QK K A ++ A + + ++++ +
Sbjct: 556 AYQVFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLES 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
Q + G +H L +T + ++ H T + K+ K + K + GD V
Sbjct: 601 GQ-----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEV 649
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
V+++G++GT++K K + VQ+G +K
Sbjct: 650 IVNTYGQRGTLLKGN-GKGQWQVQLGILK 677
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNVFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|384547383|ref|YP_005736636.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
ED133]
gi|417904179|ref|ZP_12548009.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21269]
gi|298694432|gb|ADI97654.1| DNA mismatch repair protein [Staphylococcus aureus subsp. aureus
ED133]
gi|341848002|gb|EGS89171.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21269]
Length = 782
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|317050976|ref|YP_004112092.1| MutS2 family protein [Desulfurispirillum indicum S5]
gi|316946060|gb|ADU65536.1| MutS2 family protein [Desulfurispirillum indicum S5]
Length = 785
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 163/499 (32%), Positives = 247/499 (49%), Gaps = 95/499 (19%)
Query: 197 VDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGR----L 252
++E G I DSASP LK+ R +++ ++ + M+ + + + + ++ R +
Sbjct: 141 IEEGGQISDSASPNLKRIRRELRTARSRVKKQMERYLSDAQYKDIIIDPIITIRRDRYVI 200
Query: 253 CIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLA 307
+R+ +FKG + S+SG +EP +V LN+ L + +A + E ++
Sbjct: 201 PLRS-----NFKGKIDGIVQDHSASGGTFFVEPKESVELNNRLAELQAGEREEEYRIIRE 255
Query: 308 LTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSK 367
L E +Q L +++ + ++D+ A A Y++ + GT FL EP K
Sbjct: 256 LGELVQSRLRALQENTALLARMDMYTAFARYAIRYHGT----FL----------EPSQHK 301
Query: 368 VSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDT 427
LP+ HPLL
Sbjct: 302 --------GCCLPRLRHPLL---------------------------------------K 314
Query: 428 NLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
N P + + HP +L+ITGPNTGGKTI LK++GLAV+ SG+
Sbjct: 315 NPVPVDAYLGG---EHPS-----------MLLITGPNTGGKTIALKSLGLAVLSHNSGMP 360
Query: 488 ILSSEYAK-VPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGA 546
+L SE + +FDSVFADIGDEQS+ Q+LSTFSGH+ I ++ +T +SLVLLDE+G+
Sbjct: 361 VLCSEVESFMGYFDSVFADIGDEQSIEQNLSTFSGHIVNIAHVAGNATERSLVLLDELGS 420
Query: 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPT 606
GT+P EG AL + +LE F + +ATTHH +K ++ NACMEFD L+PT
Sbjct: 421 GTDPEEGGALAVGILEYFRQR-KCSVVATTHHNAVKRYAFTTGGIGNACMEFDLQTLQPT 479
Query: 607 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVH 666
Y+IL+G G SSA+ IA+R GLPG +++ +R + S E + I +ER +F
Sbjct: 480 YRILYGYQGESSALAIAQRHGLPGEILETSRNFLESQSGEEAKTIAALERKLEKF---AR 536
Query: 667 EARHFLMLSRNLHKNLLRT 685
+ F SR L K LRT
Sbjct: 537 RSDQFERESREL-KEKLRT 554
>gi|418643039|ref|ZP_13205225.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-24]
gi|418649444|ref|ZP_13211472.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-91]
gi|375016152|gb|EHS09796.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-24]
gi|375029817|gb|EHS23142.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-91]
Length = 717
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|450107385|ref|ZP_21861014.1| putative DNA mismatch repair protein [Streptococcus mutans SF14]
gi|449222080|gb|EMC21821.1| putative DNA mismatch repair protein [Streptococcus mutans SF14]
Length = 776
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 174/297 (58%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S ++ T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-NIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAAAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|406671086|ref|ZP_11078326.1| MutS2 family protein [Facklamia hominis CCUG 36813]
gi|405581180|gb|EKB55231.1| MutS2 family protein [Facklamia hominis CCUG 36813]
Length = 784
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 145/423 (34%), Positives = 226/423 (53%), Gaps = 51/423 (12%)
Query: 433 EMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG 485
E QV+ + HP V DI I RV++ITGPNTGGKTI LKT+GL +M ++G
Sbjct: 298 ENQVALWQARHPLVDPDQVVANDILIGETYRVMLITGPNTGGKTIVLKTIGLIQLMGQAG 357
Query: 486 LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIG 545
L + E +++ FD +FADIGDEQS+ Q+LSTFS H+ I +II +T QSL+L DE+G
Sbjct: 358 LQVPCQEGSQLGVFDQIFADIGDEQSIEQNLSTFSSHMTNIVSIIESATYQSLILFDELG 417
Query: 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKP 605
+GT+P EG AL M++L+ + G+++ +ATTH+ ELK + NA MEFD L P
Sbjct: 418 SGTDPQEGAALAMAILDHLRKIGAVI-LATTHYPELKVYGHKTPKTINAAMEFDVDSLSP 476
Query: 606 TYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHV 665
TY ++ GVPGRS+A+ I+ RLGL ++ A+Q S +NE++ ++ER + +
Sbjct: 477 TYHLMIGVPGRSNALEISRRLGLDPSILDQAKQGISQDSHSLNEMVAKLERERREASTKN 536
Query: 666 HEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPS 725
+A+ L S +L +L + L A L+ K+ +Q
Sbjct: 537 QQAQDLLDQSASLLADLRTEYDRYLHQKA------------------DLIEKAKRQANEK 578
Query: 726 ASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDK---VEHPATAS--- 779
++ + Q++R L + G+N + S +DK ++H A
Sbjct: 579 VAETQKQAEAILQEIR-----DLQLVQ-GQNHTIKES----VLIDKKSALDHLKQAEDLR 628
Query: 780 -SSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKF 838
+ V+K K R+K VGD V V + ++GT++ ++ KE+ +VQ+G +K
Sbjct: 629 KNKVLKKAKNQRRLK------VGDDVEVLPYSQRGTIVAID--KEQYLVQMGILKMTFSE 680
Query: 839 TDI 841
D+
Sbjct: 681 ADL 683
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRL 252
I Q V EDG++ SAS L + R Q E ++ ++ L++++ N ++ + R
Sbjct: 137 IDQTVSEDGTVLSSASSELARIRRQQGQTENQIRTQLNQLLKSKANILSDALITIRNDRY 196
Query: 253 CIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAE-EDVLL 306
+ AD F+G L S++G +EP + + LN+ L + S KAE E +L
Sbjct: 197 VLPVKAD---FRGQLAGNIHDQSATGQTIYVEPQAVIDLNNRLS-SLYSQEKAEIERLLY 252
Query: 307 ALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
++ ++ LD ++ I QLD + A+A Y T+P
Sbjct: 253 EISLELIPYLDALKGNQTVIGQLDFIQAKAEYGKELQATTP 293
>gi|418953440|ref|ZP_13505433.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-189]
gi|375375040|gb|EHS78649.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-189]
Length = 717
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|418873293|ref|ZP_13427600.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-125]
gi|375366347|gb|EHS70347.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-125]
Length = 717
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|94995016|ref|YP_603114.1| DNA mismatch repair protein mutS [Streptococcus pyogenes MGAS10750]
gi|94548524|gb|ABF38570.1| DNA mismatch repair protein mutS [Streptococcus pyogenes MGAS10750]
Length = 818
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 346 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 405
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 406 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADRNSLVLFDELGAGTDPQEGASLAMAI 465
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 466 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 524
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 525 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 578
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 579 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 625
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 626 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 666
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 667 ARAPRIGDDIIVTSYGQRGTL 687
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 105 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 157
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 158 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPKLERIRRQLTNSERRVRQILQDMLKE 214
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 215 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 269
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L ++ ++ + I + LD V A+ + T P
Sbjct: 270 EITQLRADERHEEGRILHTFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPK 329
Query: 349 I 349
I
Sbjct: 330 I 330
>gi|449907982|ref|ZP_21793419.1| putative DNA mismatch repair protein [Streptococcus mutans OMZ175]
gi|450089250|ref|ZP_21855118.1| putative DNA mismatch repair protein [Streptococcus mutans NV1996]
gi|450128128|ref|ZP_21868894.1| putative DNA mismatch repair protein [Streptococcus mutans U2A]
gi|449215833|gb|EMC16006.1| putative DNA mismatch repair protein [Streptococcus mutans NV1996]
gi|449229885|gb|EMC29173.1| putative DNA mismatch repair protein [Streptococcus mutans U2A]
gi|449263244|gb|EMC60673.1| putative DNA mismatch repair protein [Streptococcus mutans OMZ175]
Length = 776
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 172/297 (57%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEVSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENFKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 137/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKIKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKVETFPDLQGSLQAINDSGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + ESL ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAESL---IASRSGRSVLPVKNTYRHRIAGVIHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
P++ Q ++ P+ S
Sbjct: 287 CLPSLTTDQTIRLLSVRHPLLS 308
>gi|357054690|ref|ZP_09115771.1| hypothetical protein HMPREF9467_02743 [Clostridium clostridioforme
2_1_49FAA]
gi|355383994|gb|EHG31065.1| hypothetical protein HMPREF9467_02743 [Clostridium clostridioforme
2_1_49FAA]
Length = 812
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 133/397 (33%), Positives = 219/397 (55%), Gaps = 30/397 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI++++ R+ +L++TGPNTGGKT+ LKTVGL +M +SGLHI + E +++ FD VFA
Sbjct: 324 VPINVWLGREFDLLIVTGPNTGGKTVSLKTVGLFTLMGQSGLHIPAWEGSELAVFDQVFA 383
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I+S++ S+SL L DE+GAGT+P EG AL +++L +F
Sbjct: 384 DIGDEQSIEQSLSTFSAHMTNIVRILSEADSRSLCLFDELGAGTDPTEGAALAIAIL-SF 442
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ T+ATTH+ ELK S ENAC EF+ L+PTY++L G+PG+S+A I++
Sbjct: 443 LHNMKCRTMATTHYSELKVFALSTPGVENACCEFNVETLQPTYRLLIGIPGKSNAFAISQ 502
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
+LGLPG ++ +A+ A +++ +E + + E + +L L +
Sbjct: 503 KLGLPGYIIDDAKSHLEAKDESFEDLLTSLESSRLTIEKEQAEINAYKDEIASLKTRLTQ 562
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
++ E RK + + +A A+ ++ +A+ + +Q+ A
Sbjct: 563 KEERLDE-------RKDKILKNATEEAQRILR-----------EAKETADQTIKQINKLA 604
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
+ S ++ + L ++T P S + SP+ + +GD V
Sbjct: 605 ASSGMGKELEAERARLRDQLKKTDEKLAVKPKGPSQPI------SPKKLK-----IGDGV 653
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V S KGTV + +K ++ VQ+G ++ ++ D+
Sbjct: 654 KVLSMNLKGTVSTLPNAKGDLYVQMGILRSLVNIRDL 690
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 141/307 (45%), Gaps = 21/307 (6%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAI-EMQKHG 110
++L+ LE+DK+ + ++ +A + LG+ L Q S + ++ +T A+ ++ G
Sbjct: 4 KALKTLEYDKIINQLTEYAASPLGK--ALCQSLSPSSDLEEVRTWQAQTTDAVTRIRLKG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA--- 167
S S +G+ + +++ + S L E L++ +LL + + R ED
Sbjct: 62 SVSF--SGI--RDIGDSLKRLDIGSSLSIPELLSISSLLTVAARAKAYGRHDADEDGRET 117
Query: 168 ----DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
D + PL + L S IK + DE + D ASP L R +++
Sbjct: 118 GESQDDFDSLEPLFAGLEPLTPLNSEIKRCILSEDE---VADDASPGLSHVRRSMKVTAD 174
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIH-GRLCIRTGADQLSFKGLLLSSSSGIGSV--IEP 280
+++ ++ ++ N N L V ++ GR C+ ++ + ++ S GS IEP
Sbjct: 175 RIHTQLNSIL-NSNRSYLQDAVITMRDGRYCLPVKSEYKNQVSGMVHDQSATGSTLFIEP 233
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
++ + LN+E+++ K E VL +L+ + +E+ + + QLD + A+A +
Sbjct: 234 MAIIRLNNEMRELEIQEQKEIEAVLASLSNQAAPYTEELRMDMELLAQLDFIFAKAGLAR 293
Query: 341 SFGGTSP 347
+ ++P
Sbjct: 294 HYKCSAP 300
>gi|417799021|ref|ZP_12446173.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21310]
gi|334274913|gb|EGL93219.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21310]
Length = 782
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|417856187|ref|ZP_12501246.1| DNA mismatch repair protein mutS [Streptococcus pyogenes HKU
QMH11M0907901]
gi|387933142|gb|EIK41255.1| DNA mismatch repair protein mutS [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 779
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 307 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKITVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADRNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 486 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 540 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 586
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 587 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 627
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 628 ARAPRIGDDIIVTSYGQRGTL 648
Score = 43.1 bits (100), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 66 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 118
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 119 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 175
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 176 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L ++ ++ + I + LD V A+ + T P
Sbjct: 231 EITQLRADERHEEGRILHTFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPK 290
Query: 349 I 349
I
Sbjct: 291 I 291
>gi|383480531|ref|YP_005389425.1| recombination inhibitory protein MutS [Streptococcus pyogenes
MGAS15252]
gi|383494512|ref|YP_005412188.1| recombination inhibitory protein MutS [Streptococcus pyogenes
MGAS1882]
gi|378928521|gb|AFC66727.1| recombination inhibitory protein MutS [Streptococcus pyogenes
MGAS15252]
gi|378930239|gb|AFC68656.1| recombination inhibitory protein MutS [Streptococcus pyogenes
MGAS1882]
Length = 779
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 307 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKITVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADRNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 486 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 540 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 586
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 587 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 627
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 628 ARAPRIGDDIIVTSYGQRGTL 648
Score = 43.1 bits (100), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 66 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 118
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 119 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 175
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 176 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L ++ ++ + I + LD V A+ + T P
Sbjct: 231 EITQLRADERHEEGRILHTFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPK 290
Query: 349 I 349
I
Sbjct: 291 I 291
>gi|445059987|ref|YP_007385391.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus warneri SG1]
gi|443426044|gb|AGC90947.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus warneri SG1]
Length = 782
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 137/384 (35%), Positives = 216/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SG+ I + + +++ F++V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGMLIPTLDGSQLSVFENVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+K I I+ ++ SL+L DE+GAGT+P EG AL MS+L+ G+L+ +ATTH
Sbjct: 392 TFSSHMKNIVEILKEADKNSLILFDELGAGTDPSEGAALAMSILDHVRNLGALV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVETLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EIN +I +E+ + E E + ++ H L + ++ Q
Sbjct: 511 TMIGTDEQEINNMIESLEKNSKRVDEQRIELDRLVKEAQTTHDELEK------QYQQYQN 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
+ K + D A + A Q SA++ + K ++LR + +
Sbjct: 565 YEK--SLMDEAK-------EKANQRVKSATKEADAILKELRELRDKKGADV-------KE 608
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
H L +Q D+ E K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 609 HELIDKKKQLD-DQYE---------AKSIKQNVQKQKYDKIQAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ EE VVQ+G +K + D+
Sbjct: 659 L-VGDEEAVVQMGILKMKLPIEDL 681
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 152/342 (44%), Gaps = 38/342 (11%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE+DK+ V++ A + LGRE + + +T + + DE + KH
Sbjct: 4 KTLDVLEFDKIKSFVANEAISDLGREKVAEMSPATDFETVEFQINETDEISQI--YNKHR 61
Query: 111 SCSLD-LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
SL LT V + +S I V + L A+ L+Q + ++ED +
Sbjct: 62 LPSLSGLTKVAQYIHRSTIGGVLNVTELN-----AIKRLIQVQNQFKTFYNQLLEEDEE- 115
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+++ L + QL + L K I D + D AS L+ R ++ +++ Q +
Sbjct: 116 -VKYPILDSQMAQLPILTDLFKDINDKCDAH-DLYDHASYELQSIRSKISSTNQRIRQNL 173
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
D +++++ N + V+ + R I A+ + F G++ S+SG IEP S V
Sbjct: 174 DRVVKSQVNRKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSVVE 233
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
+N+++ + R E +L LT ++ V+ D + + + LD + A+A Y+ + GT
Sbjct: 234 MNNQISRLRNDEAVERERILTELTSQVAVESDALLLAESIMGHLDFLIAKARYARAIKGT 293
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
P E T+YLP AYHPLL
Sbjct: 294 KPTFH----------------------NERTVYLPNAYHPLL 313
>gi|354559953|ref|ZP_08979193.1| MutS2 protein [Desulfitobacterium metallireducens DSM 15288]
gi|353539467|gb|EHC08953.1| MutS2 protein [Desulfitobacterium metallireducens DSM 15288]
Length = 792
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 142/422 (33%), Positives = 233/422 (55%), Gaps = 49/422 (11%)
Query: 433 EMQVSALELAHP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL 486
+ ++ ++ HP VP++I + ++ +VITGPNTGGKT+ L+TVGL MA+SGL
Sbjct: 298 QQEIKLVQARHPLLSGSVVPLNIELGKRFDTIVITGPNTGGKTVALRTVGLLSAMAQSGL 357
Query: 487 HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGA 546
HI + +++ F +F DIGDEQS+ QSLSTFSGH+K I +I+ + S SL+LLDEIGA
Sbjct: 358 HIPAEANSRLGIFTQIFVDIGDEQSVEQSLSTFSGHMKNIVDIVLGADSHSLILLDEIGA 417
Query: 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPT 606
GT+P EG AL MS++ E G + IATTH+G LK+ Y+ ENA +EFD L+PT
Sbjct: 418 GTDPTEGAALAMSIITELHERGCRI-IATTHYGALKSFAYNTPRVENASVEFDVETLRPT 476
Query: 607 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVH 666
Y++L G+PG+S+A IA RLGL V++ A+ ++ ++I +E
Sbjct: 477 YRLLIGIPGKSNAFYIASRLGLNDTVLERAKSFVTEREMQVADLIDNLE----------- 525
Query: 667 EARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSL-VHKSAQQLCPS 725
+ +++ R +R+I E RK + + A+SL + + Q+L
Sbjct: 526 ----------DTQRDIEREKRRIQEE------RKTIETESSQLKAKSLKLEEDYQELLAL 569
Query: 726 ASQARSLVHKR----AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSS 781
A + V ++ A+ L Q+L + K+QH + Q +++ + +
Sbjct: 570 AQDEATEVLRQTRHEAELLIEDLKQAL--KEENKDQHAIEHARQ-----RIKKLSNKVGT 622
Query: 782 VVKDIKQSP--RVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFT 839
K+I+ S + E+ +G ++++ +KG V+K+ E++VQVG MK ++ +
Sbjct: 623 KEKEIRTSAGGGINPEEI-KLGQTLYLTKLRQKGHVLKLPTDNGEVLVQVGVMKLNVQLS 681
Query: 840 DI 841
++
Sbjct: 682 EV 683
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 112/238 (47%), Gaps = 11/238 (4%)
Query: 133 RASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKS 192
R L P E L + L+ + ++ SL E L ++++ + + +
Sbjct: 82 RGGTLSPEELLHIRDTLKAARQIKQSLLEGKMETPHL-------QEIVLGIDPPKGIEDE 134
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + + E+GS+ D ASP L + R + L++++ ++ ++RN + + + ++
Sbjct: 135 ISRCISEEGSVADQASPQLGEFRRSITRLQQRIRDTLEGIVRNSAYQKILQDPIITQRSD 194
Query: 251 RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLAL 308
R + + + +F G++ S+SG IEP++ V L +EL++ + + +LL L
Sbjct: 195 RYVVPVKQEYRQAFSGIVHDQSASGATLYIEPMAVVNLGNELREVILKEQREVQRILLQL 254
Query: 309 TEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTS 366
+ +++ + + I + Q+D + A++ S S +P + Q++K P+ S
Sbjct: 255 SAQVEGEAERIADAHEALAQVDFILAKSHLSESMNSGAPELSDQQEIKLVQARHPLLS 312
>gi|332637213|ref|ZP_08416076.1| DNA mismatch repair protein MutS2 [Weissella cibaria KACC 11862]
Length = 792
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 156/243 (64%), Gaps = 9/243 (3%)
Query: 419 AARKGEKDTNLSPSEMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTIC 471
AA ++ SP E V L+ HP V DI I + +++TGPNTGGKTI
Sbjct: 286 AAATKAQEPEYSP-ENHVRLLQARHPLLDPQKAVANDIIIGEDYKAIIVTGPNTGGKTIT 344
Query: 472 LKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS 531
LKT+GL +MA+SGL I ++EY+ V F VFADIGDEQS+ QSLSTFS H+ I +I+
Sbjct: 345 LKTLGLLQLMAQSGLFIPTAEYSTVGLFKEVFADIGDEQSIEQSLSTFSSHMVNIVDILK 404
Query: 532 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591
Q + SLVL DE+GAGT+P EG AL MS+L+A GS T+ATTH+ ELK Y+
Sbjct: 405 QIDADSLVLFDELGAGTDPQEGAALAMSILDAVGAKGS-YTVATTHYPELKVYGYNRVDT 463
Query: 592 ENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI 651
NA MEFD L+PTYK L G+PGRS+A+ I++RLGL ++ A L S E+N++I
Sbjct: 464 INASMEFDVDTLRPTYKFLLGIPGRSNALEISKRLGLDQSIIDAAASLTSEDSQELNDMI 523
Query: 652 IEM 654
++
Sbjct: 524 ADL 526
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 4/181 (2%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
+L V + L + + +D DG + D ASP L + R + E + Q M R ++ + L
Sbjct: 126 RLVVMQDLTRRVNTAIDGDGRVTDEASPELHRVRQAITSTENAIRQKMQDYTRGKSAQYL 185
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLNDELQQARASVT 298
+ +I R I A+ S G ++ S G IEP V +N+ L++
Sbjct: 186 SDPIVTIRSDRYVIPVKAEYRSRFGGVVHDQSQTGQTLYIEPADVVDMNNRLREHYIKER 245
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRS 358
EE VL L++ ++ + + I+K + LD VNA+A Y+ + P + P++ R
Sbjct: 246 HEEERVLAELSDMLRPEAENIQKNAEVLGHLDFVNAKARYAAATKAQEPE-YSPENHVRL 304
Query: 359 L 359
L
Sbjct: 305 L 305
>gi|386830679|ref|YP_006237333.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
subsp. aureus HO 5096 0412]
gi|385196071|emb|CCG15689.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
subsp. aureus HO 5096 0412]
Length = 782
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|417922412|ref|ZP_12565900.1| MutS2 family protein [Streptococcus cristatus ATCC 51100]
gi|342832509|gb|EGU66804.1| MutS2 family protein [Streptococcus cristatus ATCC 51100]
Length = 778
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 148/390 (37%), Positives = 218/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 295 EQDIQLLSVRHPLIENAVANDLHFGPDLTAIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 354
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 355 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 414
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 415 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIEMDWVENASMEFDTDSLRPTY 473
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 474 RFMQGVPGRSNAFEIARRLGLSEVIVGHAQEQTDTDS-DVNRII---ERLEEQTL----E 525
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V + L S S
Sbjct: 526 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIVDMA---LAESES 582
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
++L K + L+P ++ + Q + P T S K ++
Sbjct: 583 ILKNLHDKSS--LKP--------------HEIIEAKAQLKKL----APETVDLSKNKVLQ 622
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 623 QA---KKNRAPKVGDDILVTSYGQRGTLVK 649
Score = 39.3 bits (90), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 87/171 (50%), Gaps = 6/171 (3%)
Query: 190 IKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIH 249
I+ +Q +++ G ++ AS L + R ++Q E ++ ++ +++ + + V+S +
Sbjct: 131 IQGSLQAINDGGFLESFASEELSRIRRKIQENEVQVRDILQEILKTKGDMLADQVVASRN 190
Query: 250 GRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
GR + T ++++ G++ S+SG IEP + V LN+E+ +RA + +L
Sbjct: 191 GRNVLPVKNTYRNRIA--GVVHDISASGSTVYIEPRAVVNLNEEIASSRADERYEIQRIL 248
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
A+++ ++ EI I LD+V A+ + G P++ QD++
Sbjct: 249 QAMSDMIRPHAAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQDIQ 299
>gi|71904211|ref|YP_281014.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS6180]
gi|71803306|gb|AAX72659.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS6180]
Length = 818
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 346 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 405
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 406 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADRNSLVLFDELGAGTDPQEGASLAMAI 465
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 466 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 524
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 525 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 578
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 579 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 625
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 626 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 666
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 667 ARAPRIGDDIIVTSYGQRGTL 687
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 105 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 157
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 158 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 214
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 215 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 269
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 270 EITQLRADERHEEGRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPK 329
Query: 349 I 349
I
Sbjct: 330 I 330
>gi|408789877|ref|ZP_11201518.1| Recombination inhibitory protein MutS2 [Lactobacillus florum 2F]
gi|408520899|gb|EKK20921.1| Recombination inhibitory protein MutS2 [Lactobacillus florum 2F]
Length = 785
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 146/386 (37%), Positives = 221/386 (57%), Gaps = 31/386 (8%)
Query: 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD 508
I + + R L+ITGPNTGGKTI +KT+GL +MA+SGL I + E ++V FD VFADIGD
Sbjct: 321 IELNQDCRQLIITGPNTGGKTITMKTLGLLQLMAQSGLFIAADEGSQVGVFDEVFADIGD 380
Query: 509 EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
EQS+ Q+LSTFS HL I I+ Q+T++SLVL+DE+GAGT+P EG AL M++L+A
Sbjct: 381 EQSIEQNLSTFSSHLDNIIQILQQTTARSLVLIDELGAGTDPSEGAALAMAILDAIERLH 440
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
S + +ATTH+ ELK Y++ ENA MEFDE L+PTY++L GVPG+S+A+ IA RLGL
Sbjct: 441 STV-LATTHYPELKAYAYNHVATENASMEFDEETLRPTYRLLMGVPGQSNALQIARRLGL 499
Query: 629 PGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRK 688
+V A ++N +I E+ TQ HE L+ L K +++
Sbjct: 500 SEQIVNQATAYTDETDQDLNRMITEL----TQQTRLAHE--RSTQLAEKL-KATTELQQE 552
Query: 689 ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL 748
+ +H + ++ Q ++ A A LV K+ ++ A +H++ + L+ ++
Sbjct: 553 LQDHFGQFQAQREQLVNQAKREANQLVTKTKRE----AQAVIDDLHQKQRDLQGGVKENE 608
Query: 749 HCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSS 808
GK L + QQ PA + V+K R K + VGD V V +
Sbjct: 609 IIADQGK----LNALEQQ--------PALRKNRVLK------RSKAKQTLRVGDDVLVKN 650
Query: 809 FGKKGTVIKVEPSKEEIVVQVGNMKW 834
+G++G +++ + ++ VQ+G +K
Sbjct: 651 YGQQGVLLR-KLGQQNWEVQLGILKM 675
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 145/319 (45%), Gaps = 18/319 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL-LDETNAAIEMQKHGSC 112
L+ LE+ K+ + + T LG+ L QL+ + D ++ LDET+ + + +
Sbjct: 6 LKTLEYKKIKTQIRDYLATDLGK-LELDQLFPTSDP--DLIQQQLDETDDGVHLDR---L 59
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAA--IKEDADLY 170
+ L L V ++ + + L E L QFS+ LQ R E +
Sbjct: 60 NQPLPLPRLVAVDQPLKRLEIGANLNGKE------LAQFSQILQTVQRINQFFTELESDH 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+ + L + QL L + ++Q VD G + D+AS L+Q R Q++ + + M+
Sbjct: 114 VELLTLYSLNEQLVALPELNQRLLQSVDATGWLLDTASQQLQQLRHQIEQTQATIKTKMN 173
Query: 231 MLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLN 287
I + + L V +I R I A+ + F G++ S+SG +EP + V LN
Sbjct: 174 GYIHGKRAKYLSDTVITIRDDRYVIPVKAEAKQQFGGIVHDQSASGQTLYVEPQAVVELN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
++L+ + + + E+ +L L+++++ + + + LD++NA+A Y+ T P
Sbjct: 234 NQLRFQQKAALQEEKRILAELSDELRPEGAHLAANATQLGHLDLINAKARYARFLHATKP 293
Query: 348 NIFLPQDMKRSLTHEPVTS 366
+ + ++ P+ S
Sbjct: 294 KLSIRNEVHLKTARHPLIS 312
>gi|94993083|ref|YP_601182.1| DNA mismatch repair protein mutS [Streptococcus pyogenes MGAS2096]
gi|94546591|gb|ABF36638.1| DNA mismatch repair protein mutS [Streptococcus pyogenes MGAS2096]
Length = 818
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 346 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKITVFN 405
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 406 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADRNSLVLFDELGAGTDPQEGASLAMAI 465
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 466 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 524
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 525 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 578
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 579 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 625
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 626 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 666
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 667 ARAPRIGDDIIVTSYGQRGTL 687
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 105 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 157
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 158 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 214
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 215 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 269
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L ++ ++ + I + LD V A+ + T P
Sbjct: 270 EITQLRADERHEEGRILHTFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPK 329
Query: 349 I 349
I
Sbjct: 330 I 330
>gi|339007645|ref|ZP_08640219.1| protein MutS2 [Brevibacillus laterosporus LMG 15441]
gi|338774848|gb|EGP34377.1| protein MutS2 [Brevibacillus laterosporus LMG 15441]
Length = 785
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 144/397 (36%), Positives = 216/397 (54%), Gaps = 32/397 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+D+ + + +V+TGPNTGGKT+ +KT+GL +M +GLHI + E ++ F S+FA
Sbjct: 317 VPLDVELGKGYTGIVVTGPNTGGKTVSIKTLGLLSLMTMAGLHIPAQEETEMAVFSSIFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS HL I I+ Q +SLVL DE+GAGT+P EG AL MS+L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHLTNIIRILDQMDEKSLVLFDELGAGTDPTEGAALAMSILDHV 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ L +ATTH+ ELK Y NA +EFD L+PTY++L GVPGRS+A IA
Sbjct: 437 LAKGARL-VATTHYSELKAYAYDTPEVVNASVEFDVQTLRPTYRLLVGVPGRSNAFAIAS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL ++ AR+ ++ ++I +E K + +A + R + L +
Sbjct: 496 RLGLNEQIIDKARRSVSKEENQVEKMIASLESNKKTAEKEREDAENI----RKQAEELRQ 551
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ H A + R ++K + A +A L + A+ + R L R + +
Sbjct: 552 QLEEERRHFAEAKNRLLEKAEEEARVAVQLASEEAEVII------RELRQMRKEGVDFKE 605
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
+ + K L + + +KV+ PA A V+ T++ +GD V
Sbjct: 606 HRLIDAKK------RLGNAVLELEKEKVKKPAKA-------------VRATQI-KIGDEV 645
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V SFG+KGTV+ + S E +VQ+G +K +K D+
Sbjct: 646 MVDSFGQKGTVLD-KVSSTEYLVQLGIIKMKVKKDDM 681
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 152/346 (43%), Gaps = 52/346 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
LR LE++K+ + + LGRE +SL + +A Q+ +
Sbjct: 6 LRTLEFNKIIAMLMEKTTSELGRELA------------ESLEPFNHIDAVRHAQRQTEEA 53
Query: 114 LDLTGVDLSLVKSAIREVRRASPL---RPNEALAVVALLQFSETLQLSLR-----AAIKE 165
+ V S+ IR +R P+ R N LA + LL + TL R I E
Sbjct: 54 STVLRVKGSVPLGGIRNIR--GPIQRARLNSILAPLELLDIATTLHAGRRLKQFITDISE 111
Query: 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
+ +L I L ++ ++ R L I + +D++G + DSAS L+Q R +++ E ++
Sbjct: 112 EHELSI----LQSLVDRIEGLRDLETEIKRCIDDNGEVVDSASLELRQIRQEIRSSEARI 167
Query: 226 YQLMDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPL 281
+ +D + R+ + + + +E + +I G R I + S F G++ S+SG IEP
Sbjct: 168 REKLDQMTRSSSTQKMLMENIVTIRGDRFVIPVKQEYRSHFGGIVHDQSASGATLFIEPE 227
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
V +N++L++AR E +L LT + ++ + + L+ + +LD + A+A + S
Sbjct: 228 VIVSMNNKLREARLKEEHEVERILYTLTVLVADHVEMLLENLSVLAELDFIFAKAQLAYS 287
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
SP + E I L K HPL+
Sbjct: 288 MKAISPKL----------------------NEEGYILLKKGRHPLI 311
>gi|417643505|ref|ZP_12293552.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus warneri VCU121]
gi|330685726|gb|EGG97362.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus epidermidis VCU121]
Length = 782
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 137/384 (35%), Positives = 216/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SG+ I + + +++ F++V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGMLIPTLDGSQLSVFENVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+K I I+ ++ SL+L DE+GAGT+P EG AL MS+L+ G+L+ +ATTH
Sbjct: 392 TFSSHMKNIVEILKEADKNSLILFDELGAGTDPSEGAALAMSILDHVRNLGALV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVETLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EIN +I +E+ + E E + ++ H L + ++ Q
Sbjct: 511 TMIGTDEQEINNMIESLEKNSKRVDEQRIELDRLVKEAQTTHDELEK------QYQQYQN 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
+ K + D A + A Q SA++ + K ++LR + +
Sbjct: 565 YEK--SLMDEAK-------EKANQRVKSATKEADAILKELRELRDKKGADV-------KE 608
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
H L +Q D+ E K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 609 HELIDKKKQLD-DQYE---------AKSIKQNVQKQKYDKIQAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ EE VVQ+G +K + D+
Sbjct: 659 L-VGDEEAVVQMGILKMKLPIEDL 681
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 151/342 (44%), Gaps = 38/342 (11%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN-QTYQDSLRLLDETNAAIEMQKHG 110
++L VLE+DK+ V++ A + LGRE + + +T + + DE + KH
Sbjct: 4 KTLDVLEFDKIKSFVANEAISDLGREKVAEMYPATDFETVEFQINETDEISQI--YNKHR 61
Query: 111 SCSLD-LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
SL LT V + +S I V + L A+ L+Q + ++ED +
Sbjct: 62 LPSLSGLTKVAQYIHRSTIGGVLNVTELN-----AIKRLIQVQNQFKTFYNQLLEEDEE- 115
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+++ L + QL + L K I D + D AS L+ R ++ +++ Q +
Sbjct: 116 -VKYPILDSQMAQLPILTDLFKDINDKCDAH-DLYDHASYELQSIRSKISSTNQRIRQNL 173
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
D +++++ N + V+ + R I A+ + F G++ S+SG IEP S V
Sbjct: 174 DRVVKSQANRKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSVVE 233
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
+N+++ + E +L LT ++ V+ D + + + LD + A+A Y+ + GT
Sbjct: 234 MNNQISRLHNDEAVERERILTELTSQVAVESDALLLAESIMGHLDFLIAKARYARAIKGT 293
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
P E T+YLP AYHPLL
Sbjct: 294 KPTFH----------------------NERTVYLPNAYHPLL 313
>gi|322386149|ref|ZP_08059783.1| DNA mismatch repair protein MutS [Streptococcus cristatus ATCC
51100]
gi|321269841|gb|EFX52767.1| DNA mismatch repair protein MutS [Streptococcus cristatus ATCC
51100]
Length = 780
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 148/390 (37%), Positives = 218/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 297 EQDIQLLSVRHPLIENAVANDLHFGPDLTAIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 356
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 357 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 416
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 417 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIEMDWVENASMEFDTDSLRPTY 475
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 476 RFMQGVPGRSNAFEIARRLGLSEVIVGHAQEQTDTDS-DVNRII---ERLEEQTL----E 527
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V + L S S
Sbjct: 528 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIVDMA---LAESES 584
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
++L K + L+P ++ + Q + P T S K ++
Sbjct: 585 ILKNLHDKSS--LKP--------------HEIIEAKAQLKKL----APETVDLSKNKVLQ 624
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ P VGD + V+S+G++GT++K
Sbjct: 625 QA---KKNRAPKVGDDILVTSYGQRGTLVK 651
>gi|418028172|ref|ZP_12666754.1| MutS [Streptococcus thermophilus CNCM I-1630]
gi|354687972|gb|EHE88023.1| MutS [Streptococcus thermophilus CNCM I-1630]
Length = 783
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 215/379 (56%), Gaps = 41/379 (10%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + ++V F
Sbjct: 307 LINPVANDLRFDEDLTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSRVAIFQ 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + S SLVL+DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHIVEILNTADSNSLVLVDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK ENA MEFD L+PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-QIKTMATTHYPELKAYGIETQHVENASMEFDTATLRPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQ-FLEHVHEARHFLMLSRN 677
IA RLGL I+V+ A L S ++N +I +E + +TQ LEH+ + N
Sbjct: 486 EIARRLGLNEIIVKEAENLTDTDS-DVNRIIEQLEAQTVETQKRLEHIKDVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA-SQARSLVHKR 736
L N R +K+ + + ++++K K Q++ +A +++ S++
Sbjct: 540 LKFN--RAVKKLYNEFSHEYDKELEK-----------AQKEIQEMVDTALAESDSIL--- 583
Query: 737 AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE 796
++LH K V+ + + + A S K ++++ + K T
Sbjct: 584 ---------KNLHDKSQLKPHEVIDAKGKLKKL-----AAQVDLSKNKVLRKAKKEKATR 629
Query: 797 LPNVGDLVHVSSFGKKGTV 815
P VGD + V+++G++GT+
Sbjct: 630 APRVGDDIIVTAYGQRGTL 648
>gi|269798126|ref|YP_003312026.1| MutS2 family protein [Veillonella parvula DSM 2008]
gi|269094755|gb|ACZ24746.1| MutS2 family protein [Veillonella parvula DSM 2008]
Length = 792
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 203/694 (29%), Positives = 324/694 (46%), Gaps = 154/694 (22%)
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L+++ MP T I F +V DE G + D+ASP L R + K+
Sbjct: 116 LWVQDMPNTDRIENRF---------KRVFDEKGELLDTASPKLASLRNTIIKTREKIKND 166
Query: 229 MDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAV 284
+ ++ +++N+ F E ++ + R I + + F GL+ S++G IEP+ V
Sbjct: 167 IQAILHDKDNQKYFQEAIITQRNNRYVIPVKQEYRQYFDGLIHDRSATGQTLYIEPMRLV 226
Query: 285 PLNDELQQARASVTKAEEDVLL------ALTEKMQVDL-DEIEKMLNGIIQLDVVNARAT 337
LN+ELQ+A + E++VL AL ++ DL D EK + ++ V +A+
Sbjct: 227 NLNNELQEA---LIGEEQEVLRIYRELSALVKQHSNDLMDACEK----VSHIEFVYGKAS 279
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
++S+ G P I S++R T+ L +A HPL+
Sbjct: 280 LAISYKGV-PAIL-------------------STDR--TVNLMRARHPLI---------- 307
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
P M VP +I + R+
Sbjct: 308 ---------------------------------PPNM---------VVPTNIQLGTSYRI 325
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
L+ITG NTGGKT+ LKT+GL +M + GL I + + +P F ++FADIGDEQS+ SLS
Sbjct: 326 LLITGSNTGGKTVSLKTLGLLSLMNQCGLFIPADHGSMLPVFHNIFADIGDEQSIEASLS 385
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ Q+ +II LVLLDE+G+GT+P EG+AL +S+LE F + G+L+ + +TH
Sbjct: 386 TFSAHMTQVISIIKHCGPNDLVLLDELGSGTDPEEGSALAVSILEFFRKKGALM-VVSTH 444
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y + EN +EFDE LKPTY++ GV G S A++IA RLGLP +V+ A
Sbjct: 445 YNELKNYAYHTEGIENGHVEFDERTLKPTYRLHIGVAGSSHALSIAARLGLPKDIVERAT 504
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ +K+QF H E +LS +L++ L + AS+R
Sbjct: 505 E------------------YKSQFGSHEMEE----VLS-DLNEQLRK---------ASER 532
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
R ++K D R + K +Q ++ R + +AQ S +SL +
Sbjct: 533 ERALKKELDETRRMRGQLEKEKKQF----NEKRKQILSKAQADAESMKRSLRVEGEAIIK 588
Query: 758 HVLTSNFQQTTVDKVEHPATAS----SSV------VKDIKQSPRVKRTELPNVGDLVHVS 807
L + F +T D+ + A+ SSV V D ++S + VG V+V+
Sbjct: 589 Q-LKTQFSETNKDRRQSAINAARMGISSVHVPEAPVDDERKSLTA---DAIKVGQAVYVT 644
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
S GTV+ + ++ + V + + +K +++
Sbjct: 645 SLRSLGTVLSINGNR--VNVDINGLTATVKVSEL 676
>gi|56808628|ref|ZP_00366355.1| COG1193: Mismatch repair ATPase (MutS family) [Streptococcus
pyogenes M49 591]
Length = 779
Score = 219 bits (557), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 307 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKITVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADRNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 486 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 540 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 586
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 587 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 627
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 628 ARAPRIGDDIIVTSYGQRGTL 648
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 21/239 (8%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY-IRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL I F L
Sbjct: 66 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLNNISFQSLD 118
Query: 178 QMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIRNE 236
++ L L S Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 119 RLFENLEQFPDLQGS-FQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKEKA 177
Query: 237 N--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDEL 290
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+E+
Sbjct: 178 ELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGTTVYIEPRAVVTLNEEI 232
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
Q RA E +L A ++ ++ + I + LD V A+ + T P I
Sbjct: 233 TQLRADERHEEGRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPKI 291
>gi|209559931|ref|YP_002286403.1| DNA mismatch repair protein [Streptococcus pyogenes NZ131]
gi|238058940|sp|B5XI46.1|MUTS2_STRPZ RecName: Full=MutS2 protein
gi|209541132|gb|ACI61708.1| Putative DNA mismatch repair protein [Streptococcus pyogenes NZ131]
Length = 779
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 307 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKITVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADRNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 486 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 540 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 586
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 587 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 627
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 628 ARAPRIGDDIIVTSYGQRGTL 648
Score = 46.6 bits (109), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY-IRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL I F L
Sbjct: 66 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLNNISFQSLD 118
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 119 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDML-- 173
Query: 235 NENNESLFLE--VSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+ L E ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 174 -KEKAELLSENLIASRSGRSVLPVKNTYRNRIS--GVVHDISSSGTTVYIEPRAVVTLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 231 EITQLRADERHEEGRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPK 290
Query: 349 I 349
I
Sbjct: 291 I 291
>gi|418993763|ref|ZP_13541400.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG290]
gi|377746922|gb|EHT70892.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG290]
Length = 782
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|15924134|ref|NP_371668.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus Mu50]
gi|15926728|ref|NP_374261.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus N315]
gi|156979466|ref|YP_001441725.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus Mu3]
gi|255005930|ref|ZP_05144531.2| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus Mu50-omega]
gi|54037877|sp|P65496.1|MUTS2_STAAN RecName: Full=MutS2 protein
gi|54041518|sp|P65495.1|MUTS2_STAAM RecName: Full=MutS2 protein
gi|229486377|sp|A7X169.1|MUTS2_STAA1 RecName: Full=MutS2 protein
gi|13700944|dbj|BAB42240.1| MutS-like protein [Staphylococcus aureus subsp. aureus N315]
gi|14246914|dbj|BAB57306.1| MutS-like protein [Staphylococcus aureus subsp. aureus Mu50]
gi|156721601|dbj|BAF78018.1| MutS-like protein [Staphylococcus aureus subsp. aureus Mu3]
Length = 782
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|148267636|ref|YP_001246579.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus JH9]
gi|150393691|ref|YP_001316366.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus JH1]
gi|229486378|sp|A6U0W1.1|MUTS2_STAA2 RecName: Full=MutS2 protein
gi|229486379|sp|A5IS30.1|MUTS2_STAA9 RecName: Full=MutS2 protein
gi|147740705|gb|ABQ49003.1| MutS2 family protein [Staphylococcus aureus subsp. aureus JH9]
gi|149946143|gb|ABR52079.1| MutS2 family protein [Staphylococcus aureus subsp. aureus JH1]
Length = 782
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|21282756|ref|NP_645844.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus MW2]
gi|49485982|ref|YP_043203.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus MSSA476]
gi|297208218|ref|ZP_06924648.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300912295|ref|ZP_07129738.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus TCH70]
gi|418934045|ref|ZP_13487869.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIGC128]
gi|418987965|ref|ZP_13535638.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1835]
gi|448742615|ref|ZP_21724554.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus KT/314250]
gi|38604916|sp|Q8NX56.1|MUTS2_STAAW RecName: Full=MutS2 protein
gi|56749203|sp|Q6GA70.1|MUTS2_STAAS RecName: Full=MutS2 protein
gi|21204194|dbj|BAB94892.1| MutS-like protein [Staphylococcus aureus subsp. aureus MW2]
gi|49244425|emb|CAG42853.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
subsp. aureus MSSA476]
gi|296886957|gb|EFH25860.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|300886541|gb|EFK81743.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus TCH70]
gi|377719753|gb|EHT43923.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1835]
gi|377771825|gb|EHT95579.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIGC128]
gi|445546653|gb|ELY14940.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus KT/314250]
Length = 782
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|387780256|ref|YP_005755054.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
subsp. aureus LGA251]
gi|416839782|ref|ZP_11903140.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus O11]
gi|416847321|ref|ZP_11907055.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus O46]
gi|323440694|gb|EGA98404.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus O11]
gi|323442363|gb|EGA99992.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus O46]
gi|344177358|emb|CCC87824.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
subsp. aureus LGA251]
Length = 782
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|418280914|ref|ZP_12893736.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21178]
gi|365167015|gb|EHM58492.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21178]
Length = 782
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|336065010|ref|YP_004559869.1| DNA mismatch repair protein MutS2 [Streptococcus pasteurianus ATCC
43144]
gi|334283210|dbj|BAK30783.1| DNA mismatch repair protein MutS2 [Streptococcus pasteurianus ATCC
43144]
Length = 778
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 220/397 (55%), Gaps = 37/397 (9%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L PV D+ + V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + +KV F+
Sbjct: 307 LTDPVANDLHFLNELTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSKVAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + SLVL+DE+GAGT+P EG +L +++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTNIVEILAAADKDSLVLVDELGAGTDPQEGASLAIAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + T+ATTH+ ELK +F ENA MEFD L PTY + GVPGRS+A
Sbjct: 427 LEHL-RLMEIKTMATTHYPELKAYGIETEFVENASMEFDTETLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A +L + ++N +I +E E HE+R L + + +
Sbjct: 486 EIARRLGLAEIIVNEAERLTD-SDTDVNRIIERLE-------EQTHESRKRLDHIKEVEQ 537
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ L+ R + + K +++ A A A+ +V K+ + S ++L H RA L
Sbjct: 538 DNLKFNRAVKKLYNEFSHAKDKELEKARAKAQEIVDKA---MTESEEILKNL-HDRA-SL 592
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+P H K+Q + K+ S + V + R P V
Sbjct: 593 KP------HEVIEAKSQ-----------LKKLAPEVDLSKNKVLKKAKKLRA-----PRV 630
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
GD + V+++G++GT++ + + VQVG +K +K
Sbjct: 631 GDDIVVTAYGQRGTLVN-QGKNGKWEVQVGLIKMTLK 666
>gi|28895191|ref|NP_801541.1| DNA mismatch repair protein [Streptococcus pyogenes SSI-1]
gi|28810436|dbj|BAC63374.1| putative DNA mismatch repair protein [Streptococcus pyogenes SSI-1]
Length = 782
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 310 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 369
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 370 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 429
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 430 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 488
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 489 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 542
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 543 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 589
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 590 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 630
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 631 ARAPRIGDDIIVTSYGQRGTL 651
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 69 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 121
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 122 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 178
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 179 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 233
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 234 EITQLRADERHEEGRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPK 293
Query: 349 I 349
I
Sbjct: 294 I 294
>gi|253317073|ref|ZP_04840286.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus str. CF-Marseille]
gi|257795126|ref|ZP_05644105.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A9781]
gi|258407166|ref|ZP_05680315.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A9763]
gi|258421743|ref|ZP_05684664.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A9719]
gi|258432913|ref|ZP_05688602.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A9299]
gi|258443403|ref|ZP_05691746.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A8115]
gi|258446076|ref|ZP_05694238.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A6300]
gi|258449811|ref|ZP_05697909.1| DNA mismatch repair MutS2 protein [Staphylococcus aureus A6224]
gi|258454910|ref|ZP_05702873.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A5937]
gi|269202756|ref|YP_003282025.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus ED98]
gi|282894171|ref|ZP_06302402.1| MutS2 protein [Staphylococcus aureus A8117]
gi|282928666|ref|ZP_06336263.1| MutS2 protein [Staphylococcus aureus A10102]
gi|295405948|ref|ZP_06815757.1| MutS2 protein [Staphylococcus aureus A8819]
gi|296275631|ref|ZP_06858138.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus MR1]
gi|297246508|ref|ZP_06930346.1| MutS2 protein [Staphylococcus aureus A8796]
gi|384864370|ref|YP_005749729.1| mutS2 protein [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|387150285|ref|YP_005741849.1| Recombination inhibitory protein MutS2 [Staphylococcus aureus
04-02981]
gi|415694454|ref|ZP_11455905.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus CGS03]
gi|417652169|ref|ZP_12301922.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21172]
gi|417801420|ref|ZP_12448510.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21318]
gi|417894614|ref|ZP_12538628.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21201]
gi|418424284|ref|ZP_12997408.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS1]
gi|418427274|ref|ZP_13000288.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS2]
gi|418430119|ref|ZP_13003036.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS3a]
gi|418433078|ref|ZP_13005860.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS4]
gi|418436753|ref|ZP_13008557.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS5]
gi|418439625|ref|ZP_13011334.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS6]
gi|418442676|ref|ZP_13014279.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS7]
gi|418445736|ref|ZP_13017214.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS8]
gi|418448680|ref|ZP_13020074.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS9]
gi|418451504|ref|ZP_13022839.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS10]
gi|418454561|ref|ZP_13025824.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS11a]
gi|418457435|ref|ZP_13028640.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS11b]
gi|418568086|ref|ZP_13132440.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21272]
gi|418638918|ref|ZP_13201191.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-3]
gi|418653778|ref|ZP_13215707.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-99]
gi|418663441|ref|ZP_13224959.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-122]
gi|418877992|ref|ZP_13432227.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1165]
gi|418880818|ref|ZP_13435037.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1213]
gi|418883745|ref|ZP_13437942.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1769]
gi|418886403|ref|ZP_13440552.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1150]
gi|418894761|ref|ZP_13448858.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1057]
gi|418914239|ref|ZP_13468211.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIGC340D]
gi|418920218|ref|ZP_13474151.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIGC348]
gi|418931206|ref|ZP_13485048.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1750]
gi|418991004|ref|ZP_13538665.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1096]
gi|419785786|ref|ZP_14311533.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-M]
gi|424777696|ref|ZP_18204655.1| MutS2 family protein [Staphylococcus aureus subsp. aureus CM05]
gi|443635753|ref|ZP_21119875.1| MutS2 family protein [Staphylococcus aureus subsp. aureus 21236]
gi|257789098|gb|EEV27438.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A9781]
gi|257841321|gb|EEV65766.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A9763]
gi|257842076|gb|EEV66504.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A9719]
gi|257849353|gb|EEV73330.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A9299]
gi|257851493|gb|EEV75432.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A8115]
gi|257855134|gb|EEV78075.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A6300]
gi|257856731|gb|EEV79634.1| DNA mismatch repair MutS2 protein [Staphylococcus aureus A6224]
gi|257862790|gb|EEV85555.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A5937]
gi|262075046|gb|ACY11019.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus ED98]
gi|282589705|gb|EFB94791.1| MutS2 protein [Staphylococcus aureus A10102]
gi|282763657|gb|EFC03786.1| MutS2 protein [Staphylococcus aureus A8117]
gi|285816824|gb|ADC37311.1| Recombination inhibitory protein MutS2 [Staphylococcus aureus
04-02981]
gi|294969383|gb|EFG45403.1| MutS2 protein [Staphylococcus aureus A8819]
gi|297176614|gb|EFH35877.1| MutS2 protein [Staphylococcus aureus A8796]
gi|312829537|emb|CBX34379.1| mutS2 protein [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315128541|gb|EFT84546.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus CGS03]
gi|329725189|gb|EGG61678.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21172]
gi|334276778|gb|EGL95028.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21318]
gi|341851798|gb|EGS92707.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21201]
gi|371980768|gb|EHO97969.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21272]
gi|375017989|gb|EHS11584.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-99]
gi|375019967|gb|EHS13510.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-3]
gi|375034089|gb|EHS27264.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-122]
gi|377694114|gb|EHT18479.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1165]
gi|377695625|gb|EHT19985.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1057]
gi|377715039|gb|EHT39236.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1750]
gi|377715479|gb|EHT39669.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1769]
gi|377723126|gb|EHT47251.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1096]
gi|377726585|gb|EHT50696.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1150]
gi|377731711|gb|EHT55764.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1213]
gi|377757741|gb|EHT81629.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIGC340D]
gi|377765577|gb|EHT89426.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIGC348]
gi|383361993|gb|EID39352.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-M]
gi|387719184|gb|EIK07136.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS3a]
gi|387719344|gb|EIK07293.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS2]
gi|387720694|gb|EIK08597.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS1]
gi|387725944|gb|EIK13535.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS4]
gi|387728283|gb|EIK15776.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS5]
gi|387730846|gb|EIK18199.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS6]
gi|387736228|gb|EIK23329.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS8]
gi|387737623|gb|EIK24685.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS7]
gi|387738356|gb|EIK25400.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS9]
gi|387745329|gb|EIK32088.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS10]
gi|387746022|gb|EIK32767.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS11a]
gi|387747993|gb|EIK34692.1| MutS2 protein [Staphylococcus aureus subsp. aureus VRS11b]
gi|402346376|gb|EJU81466.1| MutS2 family protein [Staphylococcus aureus subsp. aureus CM05]
gi|408423364|emb|CCJ10775.1| MutS2 protein [Staphylococcus aureus subsp. aureus ST228]
gi|408425354|emb|CCJ12741.1| MutS2 protein [Staphylococcus aureus subsp. aureus ST228]
gi|408427342|emb|CCJ14705.1| MutS2 protein [Staphylococcus aureus subsp. aureus ST228]
gi|408429329|emb|CCJ26494.1| MutS2 protein [Staphylococcus aureus subsp. aureus ST228]
gi|408431317|emb|CCJ18632.1| MutS2 protein [Staphylococcus aureus subsp. aureus ST228]
gi|408433311|emb|CCJ20596.1| MutS2 protein [Staphylococcus aureus subsp. aureus ST228]
gi|408435302|emb|CCJ22562.1| MutS2 protein [Staphylococcus aureus subsp. aureus ST228]
gi|408437287|emb|CCJ24530.1| MutS2 protein [Staphylococcus aureus subsp. aureus ST228]
gi|443408812|gb|ELS67323.1| MutS2 family protein [Staphylococcus aureus subsp. aureus 21236]
Length = 782
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|450181206|ref|ZP_21887687.1| putative DNA mismatch repair protein [Streptococcus mutans 24]
gi|449247020|gb|EMC45311.1| putative DNA mismatch repair protein [Streptococcus mutans 24]
Length = 776
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 172/297 (57%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSKIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENFKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGANLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|418559141|ref|ZP_13123687.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21252]
gi|371975432|gb|EHO92726.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21252]
Length = 782
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|418906080|ref|ZP_13460107.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIGC345D]
gi|377765380|gb|EHT89230.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIGC345D]
Length = 782
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|418928400|ref|ZP_13482286.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1612]
gi|377738312|gb|EHT62321.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1612]
Length = 782
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|320104829|ref|YP_004180420.1| DNA mismatch repair protein MutS domain-containing protein
[Isosphaera pallida ATCC 43644]
gi|319752111|gb|ADV63871.1| DNA mismatch repair protein MutS domain protein [Isosphaera pallida
ATCC 43644]
Length = 703
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 195/621 (31%), Positives = 299/621 (48%), Gaps = 76/621 (12%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREAT--LTQLWSINQTYQDSLRLLDETNAAIEMQKHG 110
SL +LE+DK+ V+S+A SLG+ A LT L + +T + L E AI
Sbjct: 6 SLEILEFDKIRGLVASYAACSLGKAAAMGLTPLEDL-ETIRRRQALTTEMAEAI------ 58
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQL--SLRAAIKEDAD 168
+ L L V++ IR + L ++ L + +ETL+ L + + D
Sbjct: 59 ASGLTPPFGGLRDVRAPIRRAMTGATLTADD------LCEVAETLRAVGQLDQWLAKIGD 112
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
+ R L + + + ++ +I +D G + D+AS L R ++ +E + +
Sbjct: 113 QFPRLGGLREGVGEFT---GVVVAIEGCLDNRGQVLDTASRRLSNLRREIHQVEEAIQEQ 169
Query: 229 MDMLIRN-ENNESLFLEVSSIHGRLCIRTGADQLSFKGLLL-----SSSSGIGSVIEPLS 282
+ +IR+ E + L ++ G + A + +G LL SS+S IEP +
Sbjct: 170 LRRMIRSPELRKILRYPNFTMVGHHYVLPVAKE--HRGELLGSVHRSSASNETVFIEPQA 227
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
+ L RA K + +L L+ ++ D + L + LD+++A+ YSL F
Sbjct: 228 IAEKSAHLAFLRAREAKEIQRILRFLSAQVGQVGDALLSTLENLGDLDLIHAQGRYSLDF 287
Query: 343 GGTSPNIF-------------LPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQ 389
P+ L +D+ R +EP + S PL +
Sbjct: 288 RMAPPDFNTDGRLVLNNARHPLLEDLFRRHPYEPPPRALEVSA------------PLSVS 335
Query: 390 QHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDI 449
+T A SA GG+ A E+ + PI++
Sbjct: 336 DSGPETATAAVSAPSAEA-------GGGHPAPVVERPRRVV--------------TPINL 374
Query: 450 FIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDE 509
+ + +LVITGPNTGGKT+ LKTV L MA+ GLHI + + +++P FD + ADIGDE
Sbjct: 375 HLGFQFSILVITGPNTGGKTVALKTVALLAAMAQCGLHIPAGQGSQLPVFDDILADIGDE 434
Query: 510 QSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 569
QSL QSLSTFS H+++I I+S++T +SLV+LDE+GAGT+P EG ALG ++L+ G
Sbjct: 435 QSLEQSLSTFSSHIRRIRTILSRATPRSLVILDELGAGTDPTEGAALGRAILDELDSIGC 494
Query: 570 LLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLP 629
L I TTH G+LKT ++N ENA +EFD L+P Y + G G+S+A+ IA RL LP
Sbjct: 495 -LAIVTTHIGDLKTYAFTNPRVENAAVEFDLETLRPMYHLTIGDIGQSNALQIARRLDLP 553
Query: 630 GIVVQN-ARQLYGAASAEINE 649
G VV AR L E+ E
Sbjct: 554 GHVVDRAARYLEQGRGPELPE 574
>gi|319651779|ref|ZP_08005905.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. 2_A_57_CT2]
gi|317396598|gb|EFV77310.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. 2_A_57_CT2]
Length = 785
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 119/285 (41%), Positives = 175/285 (61%), Gaps = 8/285 (2%)
Query: 436 VSALELAHP-VPIDIFIARKTRV------LVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
+S + HP +PID +A ++ +VITGPNTGGKT+ LKTVGL +MA++GL I
Sbjct: 302 ISLFKARHPLIPIDEVVANDIKLGAEYSTIVITGPNTGGKTVTLKTVGLCTLMAQAGLQI 361
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ + ++ F +V+ADIGDEQS+ QSLSTFS H+ I +I+ Q SLVL DE+GAGT
Sbjct: 362 PALDGSETAVFGNVYADIGDEQSIEQSLSTFSSHMVNIVDILDQVDFNSLVLFDELGAGT 421
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG AL +S+L+ + G+ + IATTH+ ELK Y+ + NA +EFD L PTYK
Sbjct: 422 DPQEGAALAISILDEVYKRGARV-IATTHYPELKAYGYNREGVINASVEFDIETLSPTYK 480
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
+L GVPGRS+A I++RLGL V++ AR GA + ++ +I +E + Q + EA
Sbjct: 481 LLIGVPGRSNAFEISKRLGLKDQVIETARSYIGADTNQVENMIASLEESRRQAEADMEEA 540
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARS 713
FL + LHK+L + + E + + ++ D A++
Sbjct: 541 NDFLKSAEKLHKDLQKQMAEFYEEKDAMHEKAAERAEDIVEKAKA 585
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 157/342 (45%), Gaps = 43/342 (12%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L++LE++K+ + +SLGR+ + S + Y++ +R +ET+ A+ +
Sbjct: 6 LKILEFNKVKEQLLEHVSSSLGRKKAINIRPSTD--YEEVIRRQEETDEAVTV------- 56
Query: 114 LDLTG-VDLSLVKSAIREVRRA---SPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
L + G V L + V+RA L P E + + + S ++ + +E++ L
Sbjct: 57 LRIKGNVPLGGIFDIRPHVKRAVIGGMLSPQELNQISSTIHASRQMKRFIEEFAEEESSL 116
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I + T I+ L L SI VD++G + DSAS L+ R Q++ E ++ + +
Sbjct: 117 PI-LLGYTDKIIVL---ADLETSIRNAVDDNGEVLDSASETLRSLRNQLRTKESRVRERL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVP 285
+ +IR+ + + + + ++ + R I + G ++ SSSG IEP S V
Sbjct: 173 ESMIRSTSAQKMLSDAIITIRNDRFVIPVKQEYRGHYGGIIHDQSSSGQTLFIEPASIVQ 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ELQ R + E +L+AL+ + + E+E ++ + ++D + A+A YS +
Sbjct: 233 LNNELQGIRVKEQQEIERILIALSVQAAENSSELETIVEVLGEIDFMFAKARYSKRIKAS 292
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
P I E I L KA HPL+
Sbjct: 293 KPKI----------------------NNEGIISLFKARHPLI 312
>gi|57651753|ref|YP_186017.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus COL]
gi|87161406|ref|YP_493741.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|88194845|ref|YP_499643.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|151221268|ref|YP_001332090.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus str. Newman]
gi|161509318|ref|YP_001574977.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|221140458|ref|ZP_03564951.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus str. JKD6009]
gi|258451841|ref|ZP_05699862.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A5948]
gi|262048725|ref|ZP_06021607.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus D30]
gi|282919921|ref|ZP_06327650.1| MutS2 protein [Staphylococcus aureus A9765]
gi|284024069|ref|ZP_06378467.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 132]
gi|294848134|ref|ZP_06788881.1| MutS2 protein [Staphylococcus aureus A9754]
gi|304381299|ref|ZP_07363952.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379014337|ref|YP_005290573.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus VC40]
gi|384861738|ref|YP_005744458.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|384869677|ref|YP_005752391.1| MutS2 protein [Staphylococcus aureus subsp. aureus T0131]
gi|385781372|ref|YP_005757543.1| mutS2 protein [Staphylococcus aureus subsp. aureus 11819-97]
gi|387142755|ref|YP_005731148.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
subsp. aureus TW20]
gi|415688463|ref|ZP_11452153.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus CGS01]
gi|417648497|ref|ZP_12298321.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21189]
gi|418282999|ref|ZP_12895756.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21202]
gi|418286447|ref|ZP_12899093.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21209]
gi|418318056|ref|ZP_12929471.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21232]
gi|418321588|ref|ZP_12932927.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus VCU006]
gi|418570974|ref|ZP_13135228.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21283]
gi|418574595|ref|ZP_13138762.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21333]
gi|418578974|ref|ZP_13143069.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1114]
gi|418647620|ref|ZP_13209683.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-88]
gi|418657820|ref|ZP_13219574.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-111]
gi|418875077|ref|ZP_13429339.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIGC93]
gi|418903353|ref|ZP_13457394.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1770]
gi|418911750|ref|ZP_13465733.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG547]
gi|419775285|ref|ZP_14301227.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus CO-23]
gi|422743467|ref|ZP_16797451.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus MRSA177]
gi|422745626|ref|ZP_16799565.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus MRSA131]
gi|424784971|ref|ZP_18211774.1| Recombination inhibitory protein MutS2 [Staphylococcus aureus CN79]
gi|440708153|ref|ZP_20888828.1| MutS2 family protein [Staphylococcus aureus subsp. aureus 21282]
gi|440734591|ref|ZP_20914203.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|448744704|ref|ZP_21726588.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus KT/Y21]
gi|81694717|sp|Q5HGU0.1|MUTS2_STAAC RecName: Full=MutS2 protein
gi|122539777|sp|Q2FZD3.1|MUTS2_STAA8 RecName: Full=MutS2 protein
gi|123486337|sp|Q2FHT7.1|MUTS2_STAA3 RecName: Full=MutS2 protein
gi|229486380|sp|A6QG46.1|MUTS2_STAAE RecName: Full=MutS2 protein
gi|229486381|sp|A8Z1S5.1|MUTS2_STAAT RecName: Full=MutS2 protein
gi|57285939|gb|AAW38033.1| DNA mismatch repair MutS2 family protein [Staphylococcus aureus
subsp. aureus COL]
gi|87127380|gb|ABD21894.1| DNA mismatch repair MutS2 protein [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87202403|gb|ABD30213.1| DNA mismatch repair MutS2 family protein [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|150374068|dbj|BAF67328.1| DNA mismatch repair MutS2 family protein [Staphylococcus aureus
subsp. aureus str. Newman]
gi|160368127|gb|ABX29098.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|257860449|gb|EEV83276.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus A5948]
gi|259163181|gb|EEW47741.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus D30]
gi|269940638|emb|CBI49017.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
subsp. aureus TW20]
gi|282594637|gb|EFB99621.1| MutS2 protein [Staphylococcus aureus A9765]
gi|294824934|gb|EFG41356.1| MutS2 protein [Staphylococcus aureus A9754]
gi|302750967|gb|ADL65144.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304340282|gb|EFM06223.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|315196867|gb|EFU27210.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus CGS01]
gi|320141041|gb|EFW32888.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus MRSA131]
gi|320143098|gb|EFW34888.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus MRSA177]
gi|329313812|gb|AEB88225.1| MutS2 protein [Staphylococcus aureus subsp. aureus T0131]
gi|329730765|gb|EGG67144.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21189]
gi|364522361|gb|AEW65111.1| mutS2 protein [Staphylococcus aureus subsp. aureus 11819-97]
gi|365167155|gb|EHM58631.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21209]
gi|365168596|gb|EHM59934.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21202]
gi|365224203|gb|EHM65468.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus VCU006]
gi|365244748|gb|EHM85405.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21232]
gi|371978726|gb|EHO95967.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21333]
gi|371981854|gb|EHO99015.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21283]
gi|374363034|gb|AEZ37139.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus VC40]
gi|375029330|gb|EHS22658.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-88]
gi|375039929|gb|EHS32841.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-111]
gi|377697001|gb|EHT21356.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1114]
gi|377725128|gb|EHT49243.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG547]
gi|377742368|gb|EHT66353.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIG1770]
gi|377771122|gb|EHT94880.1| mutS2 protein [Staphylococcus aureus subsp. aureus CIGC93]
gi|383970969|gb|EID87059.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus CO-23]
gi|421956381|gb|EKU08710.1| Recombination inhibitory protein MutS2 [Staphylococcus aureus CN79]
gi|436431619|gb|ELP28972.1| DNA mismatch repair protein MutS [Staphylococcus aureus subsp.
aureus DSM 20231]
gi|436505251|gb|ELP41179.1| MutS2 family protein [Staphylococcus aureus subsp. aureus 21282]
gi|445562010|gb|ELY18195.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus KT/Y21]
Length = 782
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|377831881|ref|ZP_09814846.1| MutS family DNA mismatch repair protein [Lactobacillus mucosae LM1]
gi|377554259|gb|EHT15973.1| MutS family DNA mismatch repair protein [Lactobacillus mucosae LM1]
Length = 792
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 219/391 (56%), Gaps = 42/391 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI + + +VITGPNTGGKTI LKT+GL +M +SG+ I ++E + + +D +FA
Sbjct: 318 VANDIKLGQDYHAIVITGPNTGGKTITLKTLGLIQLMGQSGMFIPAAEGSTIAVYDEIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQSL Q+LSTFSGH++ + I+ Q+T+ SLVLLDE+GAGT+P EG AL M++L+
Sbjct: 378 DIGDEQSLEQNLSTFSGHMENVKAILDQTTAHSLVLLDELGAGTDPKEGAALAMAILDKI 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
GS + + TTH+ ELK Y NA MEFD+ L+PTY++L G+PG+S+ I IA+
Sbjct: 438 GALGSDVVV-TTHYPELKAFAYDRPETINASMEFDQKTLRPTYRLLLGIPGQSNGIAIAK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLG+ ++ A+ L S ++N++I E+ +E +AR R+ +L
Sbjct: 497 RLGIGQDIIAEAQSLVSDDSQDLNKMIGEL-------VEQRKQAR-----ERSEKLEVLL 544
Query: 685 TRRKILEHCASQRFRKVQKISDA-AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPS 743
T+ K E + + + ++ + ARS K+ Q+ + +A ++H +QL +
Sbjct: 545 TKNKATEQELNDKLTRFEEQREKLYEDARS---KANHQVSQAKKKADQIIH-HLRQLEIT 600
Query: 744 ASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDL 803
S+ ++ Q L + Q +P +SV+K KQ + + GD
Sbjct: 601 QGGSVKENELIDAQGALNALHQ--------NPRLKHNSVLKKAKQKRDLHK------GDA 646
Query: 804 VHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
V V S+G++G E++ + GN KW
Sbjct: 647 VLVKSYGQRG----------ELLEKRGNHKW 667
Score = 40.8 bits (94), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 32/224 (14%)
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDED-GSIKDSASPALKQSRGQVQMLERKLYQLM 229
I L + + +L S+ K ++Q +D+D G++ D AS L R + E ++ Q M
Sbjct: 114 IMLQVLPKEVDELVTIPSITKRLLQSIDQDTGAVLDEASSKLHGIRQLIAKTEAEIRQQM 173
Query: 230 DMLIRNENNESLFLEVSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
+ + + L + ++ R + + + S F G++ S+SG IEP S V L
Sbjct: 174 EKYTHGKMAKYLSEPIITVRNERYVLPVLSRERSRFGGVVHDQSASGQTLYIEPASTVDL 233
Query: 287 NDELQQARASVTKAEEDVLLALTEKM---QVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
N+ L+Q++ + VL AL+ + ++D+ K+L LD VNA+A
Sbjct: 234 NNRLRQSQIEERQEVRRVLAALSTMLAPYRLDIQNNAKILG---HLDFVNAKAK------ 284
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
+ D K +L P+ S+ + L KA HPL+
Sbjct: 285 -------MAHDTKATL---PLLSQAGQ------VVLKKARHPLI 312
>gi|417895692|ref|ZP_12539670.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21235]
gi|341841369|gb|EGS82830.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21235]
Length = 782
Score = 218 bits (556), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|15675664|ref|NP_269838.1| DNA mismatch repair protein [Streptococcus pyogenes SF370]
gi|71911374|ref|YP_282924.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS5005]
gi|410681228|ref|YP_006933630.1| mutS2 family protein [Streptococcus pyogenes A20]
gi|81782448|sp|Q99Y73.1|MUTS2_STRP1 RecName: Full=MutS2 protein
gi|13622877|gb|AAK34559.1| putative DNA mismatch repair protein [Streptococcus pyogenes M1
GAS]
gi|71854156|gb|AAZ52179.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS5005]
gi|395454616|dbj|BAM30955.1| DNA mismatch repair protein [Streptococcus pyogenes M1 476]
gi|409693817|gb|AFV38677.1| mutS2 family protein [Streptococcus pyogenes A20]
Length = 779
Score = 218 bits (556), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 307 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 486 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 540 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 586
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 587 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 627
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 628 ARAPRIGDDIIVTSYGQRGTL 648
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 66 VSLSSISESLKRLELSTDLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 118
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 119 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 175
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 176 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 231 EITQLRADERHEEGRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPK 290
Query: 349 I 349
I
Sbjct: 291 I 291
>gi|418655590|ref|ZP_13217441.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-105]
gi|375036341|gb|EHS29416.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-105]
Length = 782
Score = 218 bits (556), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKYSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|19746770|ref|NP_607906.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS8232]
gi|81763122|sp|Q8NZI5.1|MUTS2_STRP8 RecName: Full=MutS2 protein
gi|19749002|gb|AAL98405.1| putative DNA mismatch repair protein [Streptococcus pyogenes
MGAS8232]
Length = 779
Score = 218 bits (556), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 307 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 486 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 540 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 586
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 587 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 627
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 628 ARAPRIGDDIIVTSYGQRGTL 648
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 116/241 (48%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 66 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 118
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 119 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 175
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 176 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD+V A+ + T P
Sbjct: 231 EITQLRADERHEEGRILHAFSDLLRPHVATIRNNAWILGHLDLVRAKYLFMSDNKATIPK 290
Query: 349 I 349
I
Sbjct: 291 I 291
>gi|418949118|ref|ZP_13501378.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-157]
gi|375369683|gb|EHS73552.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-157]
Length = 782
Score = 218 bits (556), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|357011634|ref|ZP_09076633.1| recombination and DNA strand exchange inhibitor protein
[Paenibacillus elgii B69]
Length = 795
Score = 218 bits (556), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 218/804 (27%), Positives = 376/804 (46%), Gaps = 144/804 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L L++ + ++ A TSLG+ + +L + + + R L T+ A+ + + G
Sbjct: 13 LATLDFRSVLERCANHAATSLGK-GRVEELEP-SGDFHEVKRRLQATDEAVNVDRLKGGA 70
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ +++A+ R L P E L + Q L L A ED + +
Sbjct: 71 PFG----GIRDIRAAVHRARIGGMLNPVELLDIAMTSQGGRRLGRFLEAT-NEDYSIPL- 124
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
L ++ + ++ L + I VDE+ + D+AS L + R +++ E K + ++ +
Sbjct: 125 ---LLDLLEPMTDHKELEERIRGCVDENAQVMDTASTELLKIRQELRSSESKARERLEQM 181
Query: 233 IRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+R + + + + + +I G R I + + F G++ S+SG IEP + V +N+
Sbjct: 182 VRTPSIQKMLQDNLVTIRGDRYVIPVKQEYRGHFGGMIHDQSASGATLFIEPEAVVQMNN 241
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLD----VVNARATYSLSFGG 344
+++ L L E+ +V+ +I +ML+ ++ +VN + L F
Sbjct: 242 RVRE-------------LKLKEEAEVE--KILRMLSALVADSADTLLVNVESLTELDF-- 284
Query: 345 TSPNIF----LPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
IF + ++MK +L P+ + +R + I L + HPL+
Sbjct: 285 ----IFAKAGVAREMKATL---PLLN-----DRGF-IKLKRGRHPLI------------- 318
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
P+E VP+D+ + + +++
Sbjct: 319 ------------------------------PAE---------KVVPLDVELGNRYSTIIV 339
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT+ LKT+GL +MA +GL + + E +++ FD++FADIGDEQS+ Q+LSTFS
Sbjct: 340 TGPNTGGKTVSLKTIGLLSLMAMAGLFVPAEEGSQLCVFDAIFADIGDEQSIEQNLSTFS 399
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H+ I I+ + T +SLVLLDE+GAGT+P EG+AL +S+LE G + +ATTH+ E
Sbjct: 400 SHMTNIIRILREMTPKSLVLLDELGAGTDPAEGSALAISILEHMHRMGCRI-VATTHYSE 458
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK + NA MEFD L+PTY++L GVPGRS+A IAERLGL ++ +AR
Sbjct: 459 LKAYAFDRQGVINASMEFDVQTLRPTYRLLVGVPGRSNAFAIAERLGLAKTIIDHARGQV 518
Query: 641 GAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKI---LEHCASQR 697
G + +I +E + Q A R RR++ E A++R
Sbjct: 519 GEEDQRVESMIATLEENRLQAEAERESAE--------------RNRREVETLREQLAAER 564
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
R+ ++ D L ++ ++ + ++AR + +LR + K
Sbjct: 565 -RRFEEQKD------KLFERAEREAQEAVAKARREADEIITELRRIQREEAGGVK----D 613
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
H L S ++ D P S S +PR K+ + GD V V++ G++G V++
Sbjct: 614 HKL-SELKRRMNDAA--PELRSKSKAG----TPR-KKADRIGPGDEVLVTNLGQRGHVVE 665
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ S+ E+ VQ+G +K + D+
Sbjct: 666 L-VSETEVTVQLGILKMKVNKADL 688
>gi|139473165|ref|YP_001127880.1| DNA mismatch repair protein [Streptococcus pyogenes str. Manfredo]
gi|229486383|sp|A2RCQ8.1|MUTS2_STRPG RecName: Full=MutS2 protein
gi|134271411|emb|CAM29631.1| putative DNA mismatch repair protein [Streptococcus pyogenes str.
Manfredo]
Length = 779
Score = 218 bits (556), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 307 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 367 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 486 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 539
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 540 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 586
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 587 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 627
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 628 ARAPRIGDDIIVTSYGQRGTL 648
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 66 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 118
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 119 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 175
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 176 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 230
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 231 EITQLRADERHEEGRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPK 290
Query: 349 I 349
I
Sbjct: 291 I 291
>gi|449894229|ref|ZP_21789133.1| putative DNA mismatch repair protein [Streptococcus mutans SF12]
gi|450063269|ref|ZP_21844807.1| putative DNA mismatch repair protein [Streptococcus mutans NLML5]
gi|449204905|gb|EMC05682.1| putative DNA mismatch repair protein [Streptococcus mutans NLML5]
gi|449255468|gb|EMC53322.1| putative DNA mismatch repair protein [Streptococcus mutans SF12]
Length = 776
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 172/297 (57%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENFKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 70/322 (21%), Positives = 137/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKIKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q+
Sbjct: 110 ENVDLQILDCLFEKVETFPDLQGSLQAINDSGFIEDFASPELTKIRHHIHQNEQQIRQIF 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + ESL ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAESL---IASRSGRSVLPVKNTYRHRIAGVIHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|418598399|ref|ZP_13161909.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21343]
gi|374399756|gb|EHQ70892.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21343]
Length = 782
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRIETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-FNDEEAIVQMGIIKMKLPIEDL 681
>gi|21911124|ref|NP_665392.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS315]
gi|50914919|ref|YP_060891.1| hypothetical protein M6_Spy1573 [Streptococcus pyogenes MGAS10394]
gi|21905334|gb|AAM80195.1| putative DNA mismatch repair protein [Streptococcus pyogenes
MGAS315]
gi|50903993|gb|AAT87708.1| MutS [Streptococcus pyogenes MGAS10394]
Length = 818
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 346 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 405
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 406 NIFADIGDEQSIEQSLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 465
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 466 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 524
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 525 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 578
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 579 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 625
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 626 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 666
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 667 ARAPRIGDDIIVTSYGQRGTL 687
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 105 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 157
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 158 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 214
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 215 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 269
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 270 EITQLRADERHEEGRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPK 329
Query: 349 I 349
I
Sbjct: 330 I 330
>gi|450083246|ref|ZP_21852813.1| putative DNA mismatch repair protein MutS2 [Streptococcus mutans
N66]
gi|449213679|gb|EMC14009.1| putative DNA mismatch repair protein MutS2 [Streptococcus mutans
N66]
Length = 776
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 172/297 (57%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENFKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFTHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVIHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|406659764|ref|ZP_11067902.1| DNA mismatch repair protein MutS [Streptococcus iniae 9117]
gi|405577873|gb|EKB52021.1| DNA mismatch repair protein MutS [Streptococcus iniae 9117]
Length = 778
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 141/398 (35%), Positives = 226/398 (56%), Gaps = 39/398 (9%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PVP D+ V+VITGPNTGGKTI LKT+GLA +M +SGL IL+ + + + F+
Sbjct: 307 LENPVPNDLHFKEDLAVIVITGPNTGGKTIMLKTLGLAQLMGQSGLPILADKGSSIAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++++ + SLVL DE+GAGT+P EG +L M++
Sbjct: 367 GIFADIGDEQSIEQSLSTFSSHMTHIVAILNEADADSLVLFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + ++ T+ATTH+ ELK F ENA MEFD LKPTY+ + GVPGRS+A
Sbjct: 427 LEQLRLT-NIKTMATTHYPELKAYGIETAFVENASMEFDTTSLKPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL +V A+++ +++N +I E+ + Q L+ H +++ +
Sbjct: 486 EIARRLGLAQHIVNQAQEMT-TTDSDVNRII---EKLEAQTLDSRKRLEHI----KDIEQ 537
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ ++ R + + K +++ A+ A+ +V + + + S +H++A +L
Sbjct: 538 DNVKFNRAVKKLYNEFSLAKDKEMEKASLEAKEIVDLA----LAESEEILSHLHEKA-EL 592
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+P + K Q V + + V +KQ+ K+ +
Sbjct: 593 KP---HEIIEAKTKLKQLVPEVDLSKNKV----------------LKQA---KKARAARI 630
Query: 801 GDLVHVSSFGKKGTVI-KVEPSKEEIVVQVGNMKWIMK 837
GD + V+++G++GT+I +V+ +K E QVG +K +K
Sbjct: 631 GDDIVVTAYGQRGTLIAQVKGNKWE--AQVGLIKMTLK 666
>gi|333998204|ref|YP_004530816.1| MutS2 family protein [Treponema primitia ZAS-2]
gi|333740584|gb|AEF86074.1| MutS2 family protein [Treponema primitia ZAS-2]
Length = 894
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 234/481 (48%), Gaps = 78/481 (16%)
Query: 175 PLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIR 234
PL + + + ++ + + +V+D DG ++D P ++ + ++Q + R L
Sbjct: 175 PLQALCLLIPDCSAVSREVFRVLDRDGKLRDL--PEFREIKRRIQGITRDLENAGSRYTG 232
Query: 235 NENNESLFLEV--SSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDEL 290
NE+ + S GR+ + A+ S +G++ SSSG +EP V N+EL
Sbjct: 233 NEDKRRMLQSAIPSQRDGRMVLAVKANYRSRIRGIVHEVSSSGQTIFVEPEEVVEKNNEL 292
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIF 350
+ + VL +T ++ + + I++L+ + ARA ++ G +F
Sbjct: 293 LIEQRRLEAEIRRVLREMTARLAESREILGVFHTKIVELETIRARAHHARETRG----VF 348
Query: 351 LPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELR 410
S E + L +A HPLL
Sbjct: 349 ALDS--------------SGDEGGDMVALKQARHPLL----------------------- 371
Query: 411 RRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTI 470
G+AA VPID + R ++ITGPNTGGKT+
Sbjct: 372 ------GSAA------------------------VPIDFLMDGTIRTVIITGPNTGGKTV 401
Query: 471 CLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 530
LKTVGL +M +SGL + S E +P FD ++ADIGDEQSLSQSLSTFS H+ I I
Sbjct: 402 ALKTVGLFALMNQSGLALPSGEGTALPVFDGIYADIGDEQSLSQSLSTFSAHMTNIAAIT 461
Query: 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590
+ T +SLVLLDE+G+GT+P EG+A+ M++L+ E L + TTHHG LK Y+ +
Sbjct: 462 ASVTGRSLVLLDELGSGTDPEEGSAIAMAILDYLIEKKVRLLV-TTHHGMLKNYGYTREG 520
Query: 591 FENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEV 650
ENA ++FD L PTY+I+ GVPG S A++IA R GLP +V+ AR A+++ +
Sbjct: 521 VENASVDFDSRTLSPTYRIVMGVPGESRAVDIAARNGLPEAMVRGARGYLAEERADVSAL 580
Query: 651 I 651
I
Sbjct: 581 I 581
>gi|227544199|ref|ZP_03974248.1| MutS family DNA mismatch repair protein [Lactobacillus reuteri
CF48-3A]
gi|338204121|ref|YP_004650266.1| DNA mismatch repair protein MutS [Lactobacillus reuteri SD2112]
gi|227185835|gb|EEI65906.1| MutS family DNA mismatch repair protein [Lactobacillus reuteri
CF48-3A]
gi|336449361|gb|AEI57976.1| DNA mismatch repair protein MutS [Lactobacillus reuteri SD2112]
Length = 791
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 146/411 (35%), Positives = 219/411 (53%), Gaps = 50/411 (12%)
Query: 433 EMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG 485
E VS + HP V DI I + ++ITGPNTGGKTI LKT+G+ +M +SG
Sbjct: 298 ENHVSLRKARHPLIDPQRVVTNDIKIGEDYQAIIITGPNTGGKTITLKTLGIIQLMGQSG 357
Query: 486 LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIG 545
L I + E + + FD+VFADIGDEQSL Q+LSTFSGH+ + I+ Q TS+SLVLLDE+G
Sbjct: 358 LFIPAEEGSTIGIFDNVFADIGDEQSLEQNLSTFSGHMDGVKAILEQITSRSLVLLDELG 417
Query: 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKP 605
AGT+P EG AL M++L+ G+++ I TTH+ ELK Y NA MEFD+ LKP
Sbjct: 418 AGTDPKEGAALAMAILDNIGSKGTMVVI-TTHYPELKVYGYDRAKTINASMEFDQETLKP 476
Query: 606 TYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHV 665
TYK+L G+PGRS+ + IA+RLG+ V+ AR S ++N +I ++ + + E
Sbjct: 477 TYKLLLGIPGRSNGLEIAQRLGISPQVIDEARTFVSDNSQDLNNMIGDLVEQRKKAREES 536
Query: 666 HEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPS 725
+ + + + ++L K L QR + ++ ARS K+ Q+ +
Sbjct: 537 EKLAKLVAKNEKVQRDL----DKKLTRFNEQRDKLYEQ-------ARS---KANHQVSMA 582
Query: 726 ASQARSLVHKRAQQLRPSASQSLHCTKVG--KNQHVLTSNFQQTTVDKVEHPATASSSVV 783
+A ++H Q L + G K ++ + Q + ++P +SV+
Sbjct: 583 KKKADRIIHHLRQ---------LEVQQGGNVKENELIDAQGQLNALHH-DNPRLQHNSVL 632
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+ KQ + + GD V V S+G+ G E++ + GN KW
Sbjct: 633 QRAKQKHDLHK------GDAVLVKSYGQYG----------ELLSKRGNHKW 667
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 158/341 (46%), Gaps = 42/341 (12%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQT-YQDSLRLLDETNAAIEMQKHGSC 112
L LE+D++ ++ + ++ G LTQL + QT Y+ LL ET ++ +
Sbjct: 6 LETLEFDRIKGQLAQYLVSAAGHRE-LTQL--VPQTDYEAVKELLTETTDGADILR---L 59
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L+ +K ++ ++ + L E + +LQ S +S++ + + I+
Sbjct: 60 EDGIPIPQLADIKPQLKRLKIKANLNGTELAQITKVLQTS----MSVKNFFDQMREKKIK 115
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
LT + +L S+ + +++ +D DG I D AS L R + E +++Q M+
Sbjct: 116 LRVLTTQVDRLVTIPSITQRLVRSIDPDGRINDEASAKLHGIRQLITQTETEIHQQMERY 175
Query: 233 IRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
R +N + L + ++ + R I A + F G++ S+SG IEP + V N+
Sbjct: 176 TRGKNAKYLSDPIVTMRNDRYVIPVIARYRNKFGGVVHDQSASGQTLYIEPAAVVETNNR 235
Query: 290 LQQARASVTKAEEDVLLALTEKM---QVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
L+QA+ + + VL+ L++ + + D+ + E +L LD +NA+A ++
Sbjct: 236 LRQAQIEERQEMQRVLIELSQMIAPYRHDIGQNEAILG---HLDFINAKARWA------- 285
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
D K +L P+ +K E + L KA HPL+
Sbjct: 286 ------HDTKATL---PLLNK------ENHVSLRKARHPLI 311
>gi|254302123|ref|ZP_04969481.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322315|gb|EDK87565.1| DNA mismatch repair protein MutS [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 778
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 145/418 (34%), Positives = 227/418 (54%), Gaps = 41/418 (9%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S ++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNREILSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILGAVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ AR + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESIISKARAYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLC 723
+ E F+ L L R R A Q ++K + I +S ++ + +
Sbjct: 532 EMRE--RFVRLQE--EARLDRER-------AKQETLIIEKQKN--EIIKSAYEEAEKMMN 578
Query: 724 PSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVV 783
++A +LV ++++ ++ KN ++L++ ++ VE VV
Sbjct: 579 EMRAKASALV----ERIQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE--------VV 626
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
K IK K GD V V S + ++K+ SKE VQ G +K + F +I
Sbjct: 627 KKIKTKVDFK------AGDRVFVKSINQFANILKINTSKESASVQAGILKLEVPFDEI 678
Score = 45.8 bits (107), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 10/154 (6%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L + + F E ++ G
Sbjct: 133 INKTINLEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFEEPSLSNAFQEKIITERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
L + E ++ + ++I + ++ LD++NA++ Y+
Sbjct: 250 LRIAELLRNNKEDILTIGEKVMYLDILNAKSIYA 283
>gi|450133925|ref|ZP_21870859.1| putative DNA mismatch repair protein [Streptococcus mutans NLML8]
gi|449150275|gb|EMB54046.1| putative DNA mismatch repair protein [Streptococcus mutans NLML8]
Length = 776
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 172/297 (57%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGTTQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKTLEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQISAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|418644704|ref|ZP_13206844.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-55]
gi|375025107|gb|EHS18517.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-55]
Length = 781
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 220/388 (56%), Gaps = 42/388 (10%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEME----RFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHC 693
+ G EINE+I +E R +TQ L E + + +H +L +
Sbjct: 511 TMIGTDEKEINEMIESLEHNYKRVETQRL----ELDRLVKEAEQVHDDLSK--------- 557
Query: 694 ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKV 753
Q+F+ +K ++ K+ Q++ + +A ++ K +QLR + ++
Sbjct: 558 QYQQFQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHEL 611
Query: 754 GKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKG 813
+ L +++ K IKQ+ + ++ + GD V V S+G+KG
Sbjct: 612 IDKKKRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKG 654
Query: 814 TVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V+++ + EE +VQ+G +K + D+
Sbjct: 655 EVLEI-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|315037655|ref|YP_004031223.1| DNA mismatch repair protein MutS2 [Lactobacillus amylovorus GRL
1112]
gi|312275788|gb|ADQ58428.1| DNA mismatch repair protein MutS2 [Lactobacillus amylovorus GRL
1112]
Length = 785
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 199/681 (29%), Positives = 315/681 (46%), Gaps = 118/681 (17%)
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
D I + ++ QL V L + + + +D DG + D+AS AL + R + E ++
Sbjct: 111 DEKIDLSAIDSILDQLDVPDLLFRELKKSLDYDGEVLDTASSALARLRHDIASNEEEIKD 170
Query: 228 LMDMLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAV 284
M+ + +++ L ++ +I R I + + F G++ S+SG IEP + +
Sbjct: 171 KMNAYTKGNSSKYLSEQIVTIRDDRYVIPVKQEYRAKFGGVVHDQSASGQTLFIEPEAVL 230
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+ Q A + ++L L+ + ++D + + + +LD + A+A
Sbjct: 231 NLNNRQQNLIAQEKQEIRNILKHLSGLAREEIDSLNNIATALTRLDFLQAKAK------- 283
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
L ++MK S EP+ +K + +I L A HPL+
Sbjct: 284 ------LAKNMKAS---EPILTK------DHSINLRNARHPLI----------------- 311
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
P ++ VP DI + ++ITGPN
Sbjct: 312 -------------------------DPEKV----------VPNDIRLGDDFDTMLITGPN 336
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKTI LKT GL +MA+SGL I + E +KV F+ V+ADIGDEQS+ QSLSTFS H+
Sbjct: 337 TGGKTITLKTAGLLQLMAQSGLFIPAEEGSKVGVFEEVYADIGDEQSIEQSLSTFSSHIN 396
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I I+ ++LVL+DEIGAGT+P EG +L +S+L+ + + + + TTH+ ELK
Sbjct: 397 DIVAIMKNVNKETLVLIDEIGAGTDPEEGASLAISILDFLRQKDAKIMV-TTHYPELKLY 455
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
Y+ NA MEFD L PTY + G+PG S+A IA RLG+ VV+NA+ L
Sbjct: 456 GYNRPRTTNASMEFDLKTLSPTYHLQIGIPGHSNAFAIARRLGMREDVVKNAQNLMSDED 515
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
++IN++I ++ N + R LE + + QK+
Sbjct: 516 SDINKMISKL----------------------NAQTKAATSARNRLETSLDRSQKLEQKL 553
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
A V K QL + +A ++ KR R A Q + + KN V +
Sbjct: 554 QQALDWYNQRVQK---QLDFTQERANEIIAKR----RKKADQIIEQLEKQKNAGVKENKI 606
Query: 765 --QQTTVDKVEHPAT--ASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
+ ++ +E A A + V++ R KR +VGD V V S+G+ GT+ K +
Sbjct: 607 IEAKGELNNLERQANNLAHNKVLQ------REKRRHHVSVGDRVKVLSYGQTGTITK-KL 659
Query: 821 SKEEIVVQVGNMKWIMKFTDI 841
S+ E VQ+G +K + DI
Sbjct: 660 SEHEYEVQMGIIKVKVSDRDI 680
>gi|425055377|ref|ZP_18458853.1| MutS2 family protein [Enterococcus faecium 505]
gi|403034046|gb|EJY45521.1| MutS2 family protein [Enterococcus faecium 505]
Length = 786
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 156/238 (65%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFA
Sbjct: 317 VPNDIAIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+
Sbjct: 437 GKK-SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 496 RLGLDTDVINEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHNDL 553
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVKQFVVTAQGKEE-LAELVPVSEE-QTITEWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELHRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYVWEDQLVTIPVLSRRLKEAIDEDGRVTDDASPELKIIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|421876481|ref|ZP_16308038.1| MutS2 protein [Leuconostoc citreum LBAE C10]
gi|372557774|emb|CCF24158.1| MutS2 protein [Leuconostoc citreum LBAE C10]
Length = 801
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 218/802 (27%), Positives = 352/802 (43%), Gaps = 132/802 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLG-REATLTQLWS----INQTYQDSLR--LLDETNAAIEM 106
L+ LE+DK+ ++ F T +G +EA Q S IN ++ L+D I +
Sbjct: 6 LQTLEYDKIKLQLNDFLSTPIGLQEANELQPVSDVDLINHWLAETADAVLIDRLKGGIPL 65
Query: 107 QKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
K + L +++ SA + LR +A F E +Q AI E
Sbjct: 66 SKLSDITSHLKRLNIEASLSATELSEMSLVLRNTTTIA-----SFFEQMQ---DEAIGES 117
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
+R +P + L + + I +D G + D AS LK R ++ E+ +
Sbjct: 118 ----LRVLP--EQAKNLVTLPDITRQIQIAIDSSGRLNDEASYELKHVRDRINGTEQAVK 171
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSA 283
M R + + L + +I R + A+ S G ++ S G +EP +
Sbjct: 172 NQMQAYTRGKTAQYLSDPIVTIRSDRYVLPVKAEYRSQFGGVVHDQSQTGQTLYVEPQAV 231
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN++L + R E+ VL L+ + +EI + + D VNA+A +
Sbjct: 232 VTLNNKLSELRVQEQAEEQRVLQELSATLAPHTEEIANNVMILGHFDFVNAKARLAARLD 291
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
P + E + L +A+HPLL KDL
Sbjct: 292 AMQPMV----------------------NTENKVDLQQAWHPLL-----------DKDLA 318
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
AN DI + + ++ITGP
Sbjct: 319 VAN-----------------------------------------DIALGDGYKAIIITGP 337
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKTI +KT+G+ +MA+SGL I + + V F VFADIGDEQS+ QSLSTFS H+
Sbjct: 338 NTGGKTITIKTLGILQLMAQSGLFITTKRPSTVGVFHEVFADIGDEQSIEQSLSTFSSHM 397
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I ++I + ++LV+ DE+GAGT+P EG AL +++L+ A G+ + IATTH+ ELK
Sbjct: 398 ANIVSMIDRIDDKTLVIFDELGAGTDPAEGAALAIAILDKVASLGAFV-IATTHYPELKL 456
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
Y+ NA M FD LKPTY+ L GVPG+S+A+ IA+RLG V+ A L A
Sbjct: 457 YGYNRPETLNASMVFDVSTLKPTYQFLMGVPGQSNALAIAKRLGFGDDVIGAATALTSDA 516
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEH--CASQRFRKV 701
++N++I +L+ R + +H S++ +
Sbjct: 517 DQDLNQMI----------------------------ADLVAQRDAVKQHDVALSEQLKAT 548
Query: 702 QKISDA-AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVL 760
+K S+A + R L + A+ + + ++A +V +Q S+ + ++ Q
Sbjct: 549 EKQSEALSEQQRQLEKERAKIVLDAKNEANHIVAATKKQAEQMISE-IRKARLNAGQSAG 607
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
+ Q K + +S ++ K + KR + GD + V S+G++GT+IK +
Sbjct: 608 ELSEQDLQAKKRQLDGLRQNSSLEKNKILQKAKRAKQLAAGDEITVQSYGQQGTLIK-QH 666
Query: 821 SKEEIVVQVGNMKWIMKFTDIV 842
S + V++G +K ++ DIV
Sbjct: 667 SNGQWEVEMGILKMLVDEDDIV 688
>gi|384182359|ref|YP_005568121.1| recombination and DNA strand exchange inhibitor protein [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|324328443|gb|ADY23703.1| recombination and DNA strand exchange inhibitor protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 786
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 147/402 (36%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V++ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIEQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +D+
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESDM 683
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|418316581|ref|ZP_12928018.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21340]
gi|365240860|gb|EHM81619.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21340]
Length = 782
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 220/388 (56%), Gaps = 42/388 (10%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEME----RFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHC 693
+ G EINE+I +E R +TQ L E + + +H +L +
Sbjct: 511 TMIGTDEKEINEMIESLEHNYKRVETQRL----ELDRLVKEAEQVHDDLSK--------- 557
Query: 694 ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKV 753
Q+F+ +K ++ K+ Q++ + +A ++ K +QLR + ++
Sbjct: 558 QYQQFQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHEL 611
Query: 754 GKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKG 813
+ L +++ K IKQ+ + ++ + GD V V S+G+KG
Sbjct: 612 IDKKKRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKG 654
Query: 814 TVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V+++ + EE +VQ+G +K + D+
Sbjct: 655 EVLEI-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|253731756|ref|ZP_04865921.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|253724485|gb|EES93214.1| MutS family DNA mismatch repair protein [Staphylococcus aureus
subsp. aureus USA300_TCH959]
Length = 782
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 220/388 (56%), Gaps = 42/388 (10%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEME----RFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHC 693
+ G EINE+I +E R +TQ L E + + +H +L +
Sbjct: 511 TMIGTDEKEINEMIESLEHNYKRVETQRL----ELDRLVKEAEQVHDDLSK--------- 557
Query: 694 ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKV 753
Q+F+ +K ++ K+ Q++ + +A ++ K +QLR + ++
Sbjct: 558 QYQQFQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHEL 611
Query: 754 GKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKG 813
+ L +++ K IKQ+ + ++ + GD V V S+G+KG
Sbjct: 612 IDKKKRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKG 654
Query: 814 TVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V+++ + EE +VQ+G +K + D+
Sbjct: 655 EVLEI-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|422340227|ref|ZP_16421180.1| MutS2 protein [Fusobacterium nucleatum subsp. polymorphum F0401]
gi|355369878|gb|EHG17268.1| MutS2 protein [Fusobacterium nucleatum subsp. polymorphum F0401]
Length = 778
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 142/420 (33%), Positives = 228/420 (54%), Gaps = 45/420 (10%)
Query: 432 SEMQVSALELA-HP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
S ++ +LE A HP VP+ I + +L+ITGPNTGGKT+ LKT GL +MA
Sbjct: 294 SNREILSLEKARHPFIDKDKVVPLTFEIGKDYDILLITGPNTGGKTVALKTAGLLTLMAL 353
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
SG+ I +SE +K+ +F+ VFADIGDEQS+ QSLS+FS HLK + I+ T SLVLLDE
Sbjct: 354 SGIPIPASENSKIGFFEGVFADIGDEQSIEQSLSSFSAHLKNVKEILGAVTKNSLVLLDE 413
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P+EG A M++++ E + TTH+ ++K Y+ + E A MEF+ L
Sbjct: 414 LGSGTDPIEGAAFAMAVIDYLNEK-KCKSFITTHYSQVKAYGYNEEGIETASMEFNTDTL 472
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PTY++L G+PG S+A+ IA+R+GLP ++ AR + ++ E +IE + K+Q L+
Sbjct: 473 SPTYRLLVGIPGESNALTIAQRMGLPESIISKARAYISEDNKKV-EKMIENIKTKSQELD 531
Query: 664 HVHEARHFLMLSRNLHKNLLRTRRK--ILEHCASQRFRKVQKISDAAAIARSLVHKSAQQ 721
+ E F+ L + R +++ I+E ++ I +S ++ +
Sbjct: 532 EMRE--RFVRLQEEARLDRERAKQETLIIEKQKNE-------------IIKSAYEEAEKM 576
Query: 722 LCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSS 781
+ ++A +LV ++++ ++ KN ++L++ ++ VE
Sbjct: 577 MNEMRAKASALV----ERIQHEEKNKEDAKQIQKNLNMLSTALREEKNKTVE-------- 624
Query: 782 VVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
VVK IK K GD V V S + ++K+ SKE VQ G +K + F +I
Sbjct: 625 VVKKIKTKVDFK------AGDRVFVKSINQFANILKINTSKESASVQAGILKLEVPFDEI 678
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 10/154 (6%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++ + IKD AS L+ R + L + + + L + + F E ++ G
Sbjct: 133 INKTINPEKEIKDDASLDLRDIRLHKKTLNMNIKRKFEELFEEPSLSNAFQEKIITERDG 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R+ D FKGL+ SSSG IEPLS V LN+++++ + +L
Sbjct: 193 RMVTPVKYD---FKGLIKGIEHDRSSSGQTVFIEPLSIVSLNNKMRELETKEKEEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
L + E ++ + D+I + ++ LD++NA++ Y+
Sbjct: 250 LRIAELLRNNKDDILTIGEKVMYLDILNAKSIYA 283
>gi|402555327|ref|YP_006596598.1| recombination and DNA strand exchange inhibitor protein [Bacillus
cereus FRI-35]
gi|401796537|gb|AFQ10396.1| recombination and DNA strand exchange inhibitor protein [Bacillus
cereus FRI-35]
Length = 786
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 147/402 (36%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V++ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIEQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +D+
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESDM 683
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|257897919|ref|ZP_05677572.1| DNA mismatch repair protein MutS [Enterococcus faecium Com15]
gi|257835831|gb|EEV60905.1| DNA mismatch repair protein MutS [Enterococcus faecium Com15]
Length = 786
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 156/238 (65%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFA
Sbjct: 317 VPNDIAIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+
Sbjct: 437 GKK-SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 496 RLGLDTDVINEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHHDL 553
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVKQFVVTAQGKEE-LAELVPVSEK-QTITEWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELHRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKIIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKELKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 RI 295
>gi|417796292|ref|ZP_12443507.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21305]
gi|443640481|ref|ZP_21124470.1| MutS2 family protein [Staphylococcus aureus subsp. aureus 21196]
gi|334269791|gb|EGL88204.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21305]
gi|443405162|gb|ELS63772.1| MutS2 family protein [Staphylococcus aureus subsp. aureus 21196]
Length = 782
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 220/388 (56%), Gaps = 42/388 (10%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEME----RFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHC 693
+ G EINE+I +E R +TQ L E + + +H +L +
Sbjct: 511 TMIGTDEKEINEMIESLEHNYKRVETQRL----ELDRLVKEAEQVHDDLSK--------- 557
Query: 694 ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKV 753
Q+F+ +K ++ K+ Q++ + +A ++ K +QLR + ++
Sbjct: 558 QYQQFQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHEL 611
Query: 754 GKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKG 813
+ L +++ K IKQ+ + ++ + GD V V S+G+KG
Sbjct: 612 IDKKKRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKG 654
Query: 814 TVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V+++ + EE +VQ+G +K + D+
Sbjct: 655 EVLEI-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|42783724|ref|NP_980971.1| recombination and DNA strand exchange inhibitor protein [Bacillus
cereus ATCC 10987]
gi|81699646|sp|Q72ZJ0.1|MUTS2_BACC1 RecName: Full=MutS2 protein
gi|42739654|gb|AAS43579.1| MutS2 family protein [Bacillus cereus ATCC 10987]
Length = 786
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 147/402 (36%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V++ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIEQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +D+
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESDM 683
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + DL I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVDLPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|357636861|ref|ZP_09134736.1| MutS2 family protein [Streptococcus macacae NCTC 11558]
gi|357585315|gb|EHJ52518.1| MutS2 family protein [Streptococcus macacae NCTC 11558]
Length = 776
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 149/398 (37%), Positives = 227/398 (57%), Gaps = 39/398 (9%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D++ +T ++ITGPNTGGKTI LKT+GL ++A+SGL IL+ +KV F
Sbjct: 307 LLNPVANDLYFGDQTTTILITGPNTGGKTILLKTLGLTQLLAQSGLPILADSGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + S SLVL DE+GAGT+P EG AL +S+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILTHADSDSLVLFDELGAGTDPQEGAALAISI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-HIKTMATTHYPELKAYGIEKAFVENASMEFDMASLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A +L A S ++N +I ++E+ + E+R L + + +
Sbjct: 486 EIARRLGLDEIIVSEAEKLTYADS-DVNSMIEQLEK-------QMAESRRRLDNIQEVEQ 537
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
L+ R + + K ++++ A A+S++ K+ L S ++L H++A QL
Sbjct: 538 ENLKFNRAVKKLYQEFSHAKDKELNKAKLEAQSIIEKA---LTESNEILKNL-HEKA-QL 592
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+P V+ + ++ ++K+ S + + + R +
Sbjct: 593 KP--------------HQVIEA---KSKLEKLAPEVDLSKNKILKKAKKQRA-----IHA 630
Query: 801 GDLVHVSSFGKKGTVIK-VEPSKEEIVVQVGNMKWIMK 837
GD + VSS+G++GT+IK ++ + E QVG +K +K
Sbjct: 631 GDDIIVSSYGQRGTLIKQLKDGRWE--AQVGLIKMTLK 666
>gi|421150022|ref|ZP_15609678.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus str. Newbould 305]
gi|394329412|gb|EJE55514.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus str. Newbould 305]
Length = 782
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 220/388 (56%), Gaps = 42/388 (10%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEME----RFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHC 693
+ G EINE+I +E R +TQ L E + + +H +L +
Sbjct: 511 TMIGTDEKEINEMIESLEHNYKRVETQRL----ELDRLVKEAEQVHDDLSK--------- 557
Query: 694 ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKV 753
Q+F+ +K ++ K+ Q++ + +A ++ K +QLR + ++
Sbjct: 558 QYQQFQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHEL 611
Query: 754 GKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKG 813
+ L +++ K IKQ+ + ++ + GD V V S+G+KG
Sbjct: 612 IDKKKRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKG 654
Query: 814 TVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V+++ + EE +VQ+G +K + D+
Sbjct: 655 EVLEI-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|320537125|ref|ZP_08037097.1| MutS2 family protein [Treponema phagedenis F0421]
gi|320145998|gb|EFW37642.1| MutS2 family protein [Treponema phagedenis F0421]
Length = 801
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 179/623 (28%), Positives = 282/623 (45%), Gaps = 125/623 (20%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
+L VLE++K+C +++++ T GR A L + + L + +K GS
Sbjct: 5 TLEVLEFNKICAAIAAYCVTEEGRAACLQK------------KPLTDKEKITAEKKLGSD 52
Query: 113 SLDL--TGVDLSLVKSAIREVRRASPL--------RPNEALAVVALLQFS----ETLQLS 158
L L TG + S V++ PL + AL++ + +L
Sbjct: 53 FLSLLQTGAEPS--------VKKRPPLIEFLQSLGKEGSALSIEGIYSIGISAKHCNELH 104
Query: 159 LRAAIKEDADLYIRFMPLTQMIMQLFVNR-SLIKSIMQVVDEDGSIKDSASPALKQSRGQ 217
A E A+ ++ F N + K++ +DEDG +KD P L+ + +
Sbjct: 105 AWADAFEKANANKTPQQDVLQFIRTFPNLLEVYKAVFSFIDEDGDLKDI--PELRSIKNK 162
Query: 218 VQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLS----FKGLLLS---- 269
+ +E + + M +E+ L + +R G LS FKG +
Sbjct: 163 IAAIESDIEKTMRSYFTDEHTRDLLQTNIPV-----LRNGRQVLSVRSNFKGRIKGIIHE 217
Query: 270 -SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQ 328
S SG +EP V N+EL A A + + +L LT K+ +E++ +I
Sbjct: 218 YSQSGQSFYLEPEEIVFKNNELLSAHAEYDRELQRLLKELTAKIAAYAPALEELSEKLIA 277
Query: 329 LDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLL 388
LD V+A A ++ +F +F Q K + +L +A HPLL
Sbjct: 278 LDCVSASAKWAKNFHC----VFAAQPQKDTAA----------------FFLHQARHPLL- 316
Query: 389 QQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPID 448
G A VPID
Sbjct: 317 ----------------------------GKTA------------------------VPID 324
Query: 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD 508
+ + R+L+ITGPNTGGKT+ LKT L +M ++G + + +P+F+ + DIGD
Sbjct: 325 LKLVANDRLLIITGPNTGGKTVSLKTAALFALMNQTGWPVPAGAQTCLPYFNFIACDIGD 384
Query: 509 EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568
EQSL QSLSTFS H++ I I+ + +SL++LDE+ +GT+PLEG A+ M++L+ A+
Sbjct: 385 EQSLEQSLSTFSAHMQNIAEILRSADKESLIILDELASGTDPLEGGAIAMAVLDELAKRD 444
Query: 569 SLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL 628
+L+ + TTHHG LK Y+ NA +EF+E L PTYKI+ GVPG S AI+IAER G+
Sbjct: 445 ALVFV-TTHHGSLKNYGYTKQNCVNASVEFNESTLSPTYKIIMGVPGESHAIDIAERNGM 503
Query: 629 PGIVVQNARQLYGAASAEINEVI 651
P ++ AR A+++ +I
Sbjct: 504 PQHIIAQARAYIQDNRADVSALI 526
>gi|402816098|ref|ZP_10865689.1| protein MutS2 [Paenibacillus alvei DSM 29]
gi|402506002|gb|EJW16526.1| protein MutS2 [Paenibacillus alvei DSM 29]
Length = 787
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 217/397 (54%), Gaps = 34/397 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + +++TGPNTGGKT+ LKT+GL +M+ SGL I + + +++ FD+++A
Sbjct: 317 VPIDVELGNDYTSIIVTGPNTGGKTVSLKTMGLLSLMSMSGLFIPAQDGSQMCVFDAIYA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS HL I I+ + T +SLVLLDE+GAGT+P EG+AL +++LE
Sbjct: 377 DIGDEQSIEQSLSTFSSHLTNIIRILGEMTPKSLVLLDELGAGTDPAEGSALAIAILEHI 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G + +ATTH+ ELK Y NA MEFD L+PTY++L GVPGRS+A IAE
Sbjct: 437 HRLGCRI-VATTHYSELKAYAYERKGVINASMEFDVQTLRPTYRLLVGVPGRSNAFAIAE 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGLP ++++AR E+ E + +E E+ A + + K
Sbjct: 496 RLGLPSSIIEHAR-------GEVTEEDMRIETMIASLEENRLRAEAEREEAERIRKETEH 548
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
R + A + ++I A+ AR +V K+ + ++ + L AQ+
Sbjct: 549 LRAVLASEEAKLHAERDKRIERASEEAREIVRKARHEADDIITELKLL----AQE----- 599
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
V +H+LT ++ +D+ PA+ +S K P K+ GD V
Sbjct: 600 -------GVNVKEHLLTEARKR--LDEAA-PASKLAS-----KAKPAKKQARKIEAGDDV 644
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V S +KG+V VE + E VVQ+G MK + D+
Sbjct: 645 MVYSLNQKGSV--VELAGNEAVVQLGIMKMKVPMDDL 679
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 146/300 (48%), Gaps = 14/300 (4%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ +++ K+ S++ A T LG A+L+ L S + ++ R L T+ A+ + + +
Sbjct: 6 LKTMDYHKILQSLARHAATPLGEHASLSLLPSTD--LEEVKRRLQATDEAMTIDRLKGGA 63
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+GV + ++ A++ R + L NE + L+ ++ + + + ED + +
Sbjct: 64 -PFSGV--ADIRPAVKRARINAMLSANELWEISVLIFAGRRVRRHIES-VHEDNPVPL-- 117
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
+ ++ L + L I + +DE G + D AS L +R ++++ E ++ + ++ +I
Sbjct: 118 --MMELADSLSWQKELEDEIRRCIDEQGEVLDQASSELAAARRELRIGEARIREKLESMI 175
Query: 234 RNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDE 289
R+ N + E ++ + R I ++ G ++ SSSG IEP + V LN++
Sbjct: 176 RSSNASKMLQEQLITIRNDRYVIPVKSEYRGHYGGIVHDQSSSGATLFIEPEAIVTLNNK 235
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L++ + + E +L LTE + + +D + + + QLD + A+A + T P +
Sbjct: 236 LRETKLKEEREIERILSQLTEHVGLQVDLLLNDTDIMEQLDFIFAKARLAHEMKATLPRM 295
>gi|326201810|ref|ZP_08191681.1| LOW QUALITY PROTEIN: MutS2 family protein [Clostridium
papyrosolvens DSM 2782]
gi|325988410|gb|EGD49235.1| LOW QUALITY PROTEIN: MutS2 family protein [Clostridium
papyrosolvens DSM 2782]
Length = 792
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/400 (34%), Positives = 220/400 (55%), Gaps = 48/400 (12%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
+PID +I K L++TGPNTGGKT+ LKTVGL +M +SGL I ++E ++ F+ ++A
Sbjct: 317 IPIDFWIGDKFSSLIVTGPNTGGKTVSLKTVGLFTLMVQSGLLIPANEGTEMSVFEKIYA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+K I +I+ ++SL+LLDE+GAGT+P EG AL MS+LE+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMKNIVDILDGVNNKSLILLDELGAGTDPTEGAALAMSILESL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ T+ATTH+ ELK S ENA EFD L+PTY++L GVPG+S+A I++
Sbjct: 437 HRMGAT-TLATTHYSELKVYAISTAGVENASCEFDVETLRPTYRLLIGVPGKSNAFAISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++ +++ ++++ +E+ +++ + A + + L K+L
Sbjct: 496 RLGLTDDIIERSKEFLSQEDIRFEDILLSIEKNRSEAEKEKMRAESYRQEAERLKKDLED 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSL--------VHKR 736
+R++ A+Q+ +++K A AR ++ S Q S+ + L V ++
Sbjct: 556 QKRRL----ATQKESELRK---AREEARRILTDSKHQADELVSEMKRLAKEQEEAEVRRQ 608
Query: 737 AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPR---VK 793
++LR ++S++ S+V+ I PR VK
Sbjct: 609 TEELRQRLNKSIN---------------------------KLDDSLVESI--MPRQGLVK 639
Query: 794 RTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
+ GD V + + +KGT++ + E VQ G MK
Sbjct: 640 PPKNLKPGDTVLIVNLNQKGTILAIPDKNGEAQVQAGIMK 679
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 138/301 (45%), Gaps = 18/301 (5%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSCS 113
RVLE+ K+ + + LGRE L + + ++L ETN + + K GS
Sbjct: 7 RVLEFYKIIDKLKGLTASELGRELVLE--LTPQTDFMTVEKMLSETNDGVSCVLKRGSPP 64
Query: 114 LD-LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
L +T + L+L + + L P E L + +L+ + L+ + + ++ +
Sbjct: 65 LGGITDIRLTL-----KRLDMGGVLNPGELLRLAGVLRAARRLKGYINDRLDDNKTNVVH 119
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
++I L N+ L + I + + I DSASPAL R Q++ + + ++ +
Sbjct: 120 -----ELISCLESNQRLEQKIDSCILSEDEIADSASPALSSIRRQIKEQQASIKDRLNSI 174
Query: 233 IRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLL-SSSSGIGSVIEPLSAVPLND 288
IR+ + E V ++ G R I + + GL+ SS+SG IEP++ V N+
Sbjct: 175 IRSTKYQKFIQESVVTMRGDRYVIPVKQEHKGDIPGLVHDSSASGATLFIEPMAVVEANN 234
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
++Q R + +L L++ + L ++ ++ + +LD + A+A ++ + P
Sbjct: 235 SIKQLRVKEQTEIDRILAELSQDASLILPQLNANMSIMARLDFIFAKAKLAVDYKCICPV 294
Query: 349 I 349
I
Sbjct: 295 I 295
>gi|431752400|ref|ZP_19541083.1| MutS2 protein [Enterococcus faecium E2620]
gi|430613891|gb|ELB50890.1| MutS2 protein [Enterococcus faecium E2620]
Length = 786
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 156/238 (65%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFA
Sbjct: 317 VPNDIAIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+
Sbjct: 437 GKK-SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 496 RLGLDTDVINEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHHDL 553
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVKQFVVTAQGKEE-LAELVPVSEK-QTITEWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELHRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKIIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKELKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|379020851|ref|YP_005297513.1| Recombination inhibitory protein MutS2 [Staphylococcus aureus
subsp. aureus M013]
gi|359830160|gb|AEV78138.1| Recombination inhibitory protein MutS2 [Staphylococcus aureus
subsp. aureus M013]
Length = 717
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 221/391 (56%), Gaps = 48/391 (12%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEME----RFKTQFLE---HVHEARHFLMLSRNLHKNLLRTRRKIL 690
+ G EINE+I +E R +TQ LE V EA +H +L +
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDCLVKEAEQ-------VHDDLSK------ 557
Query: 691 EHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHC 750
Q+F+ +K ++ K+ Q++ + +A ++ K +QLR +
Sbjct: 558 ---QYQQFQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKE 608
Query: 751 TKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFG 810
++ + L +++ K IKQ+ + ++ + GD V V S+G
Sbjct: 609 HELIDKKKRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYG 651
Query: 811 KKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+KG V+++ + EE +VQ+G +K + D+
Sbjct: 652 QKGEVLEI-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|425059158|ref|ZP_18462510.1| MutS2 family protein [Enterococcus faecium 504]
gi|403036397|gb|EJY47747.1| MutS2 family protein [Enterococcus faecium 504]
Length = 786
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 156/238 (65%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFA
Sbjct: 317 VPNDIAIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+
Sbjct: 437 GKK-SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 496 RLGLDTDVINEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHHDL 553
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVKQFVVTAQGKEE-LAELVPVSEK-QTITEWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELHRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKIIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKELKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|421892451|ref|ZP_16323108.1| Recombination inhibitory protein MutS2 [Streptococcus pyogenes
NS88.2]
gi|379981799|emb|CCG26830.1| Recombination inhibitory protein MutS2 [Streptococcus pyogenes
NS88.2]
Length = 782
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 310 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKIAVFN 369
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGDEQS+ Q+LSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 370 NIFADIGDEQSIEQNLSTFSSHMTHIVSILNEADHNSLVLFDELGAGTDPQEGASLAMAI 429
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 430 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 488
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 489 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 542
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 543 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 589
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 590 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 630
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 631 ARAPRIGDDIIVTSYGQRGTL 651
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL I F L
Sbjct: 69 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNISFQSLD 121
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 122 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDML-- 176
Query: 235 NENNESLFLE--VSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+ L E ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 177 -KEKAELLSENLIASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 233
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L A ++ ++ + I + LD V A+ + T P
Sbjct: 234 EITQLRADERHEEGRILHAFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPK 293
Query: 349 I 349
I
Sbjct: 294 I 294
>gi|431741156|ref|ZP_19530063.1| MutS2 protein [Enterococcus faecium E2039]
gi|430602267|gb|ELB39845.1| MutS2 protein [Enterococcus faecium E2039]
Length = 786
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 156/238 (65%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFA
Sbjct: 317 VPNDIAIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+
Sbjct: 437 GKK-SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 496 RLGLDTDVINEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHHDL 553
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVKQFVVTAQGKEE-LAELVPVSEK-QTITEWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELHRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKIIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKELKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|293570971|ref|ZP_06682015.1| MutS2 family protein [Enterococcus faecium E980]
gi|430841856|ref|ZP_19459773.1| MutS2 protein [Enterococcus faecium E1007]
gi|431077718|ref|ZP_19495183.1| MutS2 protein [Enterococcus faecium E1604]
gi|431112285|ref|ZP_19497661.1| MutS2 protein [Enterococcus faecium E1613]
gi|431586437|ref|ZP_19520952.1| MutS2 protein [Enterococcus faecium E1861]
gi|431737011|ref|ZP_19525967.1| MutS2 protein [Enterococcus faecium E1972]
gi|291608955|gb|EFF38233.1| MutS2 family protein [Enterococcus faecium E980]
gi|430493674|gb|ELA69965.1| MutS2 protein [Enterococcus faecium E1007]
gi|430566133|gb|ELB05254.1| MutS2 protein [Enterococcus faecium E1604]
gi|430569239|gb|ELB08256.1| MutS2 protein [Enterococcus faecium E1613]
gi|430593615|gb|ELB31601.1| MutS2 protein [Enterococcus faecium E1861]
gi|430599387|gb|ELB37093.1| MutS2 protein [Enterococcus faecium E1972]
Length = 786
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 156/238 (65%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFA
Sbjct: 317 VPNDIAIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+
Sbjct: 437 GKK-SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 496 RLGLDTDVINEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHHDL 553
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVKQFVVTAQGKEE-LAELVPVSEK-QTITEWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELHRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKIIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKELKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|422883220|ref|ZP_16929669.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK49]
gi|332363158|gb|EGJ40943.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK49]
Length = 777
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 148/390 (37%), Positives = 215/390 (55%), Gaps = 40/390 (10%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGPDLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q L E
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLAEVIVGHAQEQTNTDS-DVNRII---ERLEEQTL----E 524
Query: 668 ARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS 727
+R L R + + L+ R + + K +++ A A+ +V L S S
Sbjct: 525 SRKRLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSES 579
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+ S ++LH K ++ + Q + P T S K +K
Sbjct: 580 E--------------SILKNLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKVLK 621
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
Q+ K+ VGD + V+S+G++GT++K
Sbjct: 622 QA---KKNRAAKVGDDILVTSYGQRGTLVK 648
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 86/167 (51%), Gaps = 6/167 (3%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLC 253
+Q V++ G I+ AS +L + R ++Q E ++ +++ +++N+ V+S +GR
Sbjct: 134 LQAVNDGGFIESFASESLSRIRRKIQENENQVREILQEILKNKGEMLADQVVASRNGRNV 193
Query: 254 I---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ T +++S G++ S+SG IEP + V LN+E+ +RA + +L L+
Sbjct: 194 LPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSRADERYEIQRILQELS 251
Query: 310 EKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+ + + EI I LD+V A+ + G P++ QD++
Sbjct: 252 DLFRPHVAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQDIQ 298
>gi|406981818|gb|EKE03215.1| hypothetical protein ACD_20C00234G0037 [uncultured bacterium]
Length = 790
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 205/708 (28%), Positives = 339/708 (47%), Gaps = 124/708 (17%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATL-TQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
+L+VLEW + S++ A + +G+ L T ++S T + L+ E +++ +
Sbjct: 7 TLKVLEWATILESLARHATSEIGKARCLSTPVYSNIDTIKTELQNTTEAKFLLDL----A 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
S L G+ + I + LR + + + + + S L+ +E +L++
Sbjct: 63 ISPPLGGI--RNITELINCAKIGQTLRNQDLIDIASTIGASRRLKSFFSKYQEETPNLFL 120
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ LF N+ L + I+ D+ + D+ASP LK+ R + + Y L +
Sbjct: 121 -------VSQNLFENKILEEDIINTFDDSCEVVDNASPELKRLRSSYK---DQTYNLKNK 170
Query: 232 L--IRNENNESLFLE--VSSIHG-RLCIRTGADQLS-FKGLLL-SSSSGIGSVIEPLSAV 284
L I N S FL+ V ++ G R I + S +G++ SSSSG IEP S V
Sbjct: 171 LNSIINSAEYSKFLQEPVYTLRGDRYVIPVKIEYKSNVQGIVHDSSSSGATLFIEPKSIV 230
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+ L++ + + +L L+ ++ EIE L+ + +LD + A+A YS+
Sbjct: 231 ELNNNLREIELKIDHEIKRILAELSNRVGAQAQEIEYTLDSLAELDFIFAKAKYSILLKA 290
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
T P I ++ER I L + HP+L+ + +++ S
Sbjct: 291 TEPAI--------------------NTER--YISLTRVKHPILI--------TSIENVIS 320
Query: 405 ANTELRRR----KLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
N E+ + + G N KT +L
Sbjct: 321 NNVEIGKDWSSLIITGSNT--------------------------------GGKTVILKT 348
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TG +C V+MAK+GLHI + E A + F ++FADIGDEQS+ Q+LSTFS
Sbjct: 349 TG-------LC-------VLMAKAGLHIPAQE-ADIYPFKNIFADIGDEQSVIQNLSTFS 393
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
GH+ I +I++Q ++SLVLLDEIGAGT+P EG+AL ++LEA + G+ TI TTH+GE
Sbjct: 394 GHMTNIISILNQLDNESLVLLDEIGAGTDPSEGSALAQAILEALHKKGA-RTIVTTHYGE 452
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK L Y+ + F NA +EFD L PTYK++ G+PG+S+AI IA+ LGL + NA+ +Y
Sbjct: 453 LKALAYTQEGFYNASVEFDIDSLAPTYKLIMGLPGKSNAITIAKNLGLSAEISDNAQNIY 512
Query: 641 GAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRK 700
E+ ME + E LSRN K + + ++ LE ++ +K
Sbjct: 513 ITQKDPTGEI---MEGLQNTQQE----------LSRNAQK--IESTKEELERLETEYNQK 557
Query: 701 VQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSL 748
++KI+ A ++ K + ++AR+ + + ++ R + S+ +
Sbjct: 558 LEKINSEKKYALNVYKK---KFDTEITKARAEIKEILEETRRTKSEKV 602
>gi|430882566|ref|ZP_19484114.1| MutS2 protein [Enterococcus faecium E1575]
gi|430556811|gb|ELA96306.1| MutS2 protein [Enterococcus faecium E1575]
Length = 786
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 156/238 (65%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFA
Sbjct: 317 VPNDIAIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+
Sbjct: 437 GKK-SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 496 RLGLDTDVINEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHHDL 553
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVKQFVVTAQGKEE-LAELVPVSEK-QTITEWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELHRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPFLSRRLKEAIDEDGRVTDDASPELKIIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKELKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|423069500|ref|ZP_17058286.1| MutS2 protein [Streptococcus intermedius F0395]
gi|355364177|gb|EHG11910.1| MutS2 protein [Streptococcus intermedius F0395]
Length = 776
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 153/408 (37%), Positives = 224/408 (54%), Gaps = 43/408 (10%)
Query: 436 VSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS 490
+ L + HP V D++ A +VITGPNTGGKTI LKT+GLA +MA+SGL IL+
Sbjct: 297 IRLLHVTHPLIENAVANDLYFASDLTEIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILA 356
Query: 491 SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 550
++V FD +FADIGDEQS+ QSLSTFS H+ I I+ QS SLVLLDE+GAGT+P
Sbjct: 357 DNGSRVGIFDQIFADIGDEQSIEQSLSTFSSHMTNIVTILEQSDENSLVLLDELGAGTDP 416
Query: 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKIL 610
EG AL M++LE + T+ATTH+ ELK +NA MEFD L+PTY+ +
Sbjct: 417 QEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIEMAGVQNASMEFDTASLRPTYRFM 475
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
GVPG S+A IA RLGL VV++A++L S ++N +I ER + Q L E+R
Sbjct: 476 QGVPGCSNAFEIARRLGLSDRVVKDAQELTDTDS-DVNRII---ERLEEQTL----ESRK 527
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
L R + + L+ R + + K +++ A A+ +V L S S+
Sbjct: 528 RLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSESE-- 580
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
S ++LH K ++ + Q + P T S K +KQ+
Sbjct: 581 ------------SILKNLHDKSSLKPHEIIEAKSQLKKL----APETVDLSQNKVLKQAK 624
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVI-KVEPSKEEIVVQVGNMKWIMK 837
+ ++ P VGD + V S+G++GT++ +++ + E QVG +K ++
Sbjct: 625 KARK---PKVGDDILVISYGQRGTLVNQIKDGRWE--AQVGLIKMTLE 667
Score = 39.7 bits (91), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 97/187 (51%), Gaps = 7/187 (3%)
Query: 190 IKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIH 249
++ ++Q ++E G ++ AS L + R ++Q E ++ ++ +++ +++ + V+S +
Sbjct: 130 LQGLLQAINEGGFVESFASDNLARIRRKIQENEVQVRDILQDILKTKSDMLVDQVVASRN 189
Query: 250 GRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
GR + T +++S G++ S+SG IEP + V LN+E+ A+A +L
Sbjct: 190 GRNVLPVKNTFRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEITNAQADERHEILRIL 247
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK-RSLTHEPV 364
L+++++ + EI I LD+V A+ + G P + +D++ +TH +
Sbjct: 248 QELSDRIRPHIAEIANNAWIIGHLDLVRAKVCFMQERGAVVPMLSDSKDIRLLHVTHPLI 307
Query: 365 TSKVSSS 371
+ V++
Sbjct: 308 ENAVAND 314
>gi|418951998|ref|ZP_13504057.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-160]
gi|375370325|gb|EHS74140.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus IS-160]
Length = 782
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 217/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDCLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|424759532|ref|ZP_18187194.1| MutS2 family protein [Enterococcus faecalis R508]
gi|402404409|gb|EJV37027.1| MutS2 family protein [Enterococcus faecalis R508]
Length = 788
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 222/389 (57%), Gaps = 28/389 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +K+ F VFA
Sbjct: 317 VANDIVIGEEYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVEEESKMGIFTEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +++ + QSLVL DE+GAGT+P EG AL +++L++
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVSVLKKVDHQSLVLFDELGAGTDPQEGAALAIAILDSL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I++
Sbjct: 437 GAKGAYV-MATTHYPELKVYGYNRAGTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
LGL +++ A+Q+ S ++NE+I ++E + EARH++ S LHK L +
Sbjct: 496 CLGLDNSIIEAAKQIMDGESQDLNEMIEDLENRRKMAETEYLEARHYVDESAALHKELKK 555
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ E +R +++QK K A ++ A + + ++++ +
Sbjct: 556 AYQVFFE----EREKELQK-----------ARKEANKIIAEAEENAETIISDIRKMQLES 600
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
Q + G +H L +T + ++ H T + K+ K + K + GD V
Sbjct: 601 GQ-----QGGVKEHQLID--AKTQLSQLHHEET---KLAKN-KVLKKAKEQKKLKAGDEV 649
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
V+++G++GT++K + K + VQ+G +K
Sbjct: 650 IVNTYGQRGTLLK-DNGKGQWQVQLGILK 677
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 3/171 (1%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
QL V L + + Q +D+DG + D ASPALK R ++ E+ + + +D +IR +N L
Sbjct: 125 QLEVLPELNRQLKQAIDDDGYVTDEASPALKAIRQNIRRSEQTIREELDSIIRGKNARYL 184
Query: 242 FLEVSSIHG-RLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQQARASVT 298
+ ++ R I + + G ++ S+SG IEP + +N+ L+Q + +
Sbjct: 185 SDALVTMRNERYVIPVKQEYKNIFGGVVHDQSASGQTLFIEPKQILEMNNRLRQQQIAER 244
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+L L+ ++ EI I +LD +NA+A P I
Sbjct: 245 NEITRILAELSAELVPYRREITHNAYVIGKLDFINAKARLGKELKAVVPEI 295
>gi|170016691|ref|YP_001727610.1| mismatch repair ATPase [Leuconostoc citreum KM20]
gi|414596600|ref|ZP_11446174.1| MutS2 protein [Leuconostoc citreum LBAE E16]
gi|238688948|sp|B1MXB4.1|MUTS2_LEUCK RecName: Full=MutS2 protein
gi|169803548|gb|ACA82166.1| Mismatch repair ATPase (MutS family) [Leuconostoc citreum KM20]
gi|390482621|emb|CCF28235.1| MutS2 protein [Leuconostoc citreum LBAE E16]
Length = 801
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 217/802 (27%), Positives = 351/802 (43%), Gaps = 132/802 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLG-REATLTQLWS----INQTYQDSLR--LLDETNAAIEM 106
L+ LE+DK+ ++ F T G +EA Q S IN ++ L+D I +
Sbjct: 6 LQTLEYDKIKLQLNDFLSTPTGLQEANELQPVSDVDLINHWLAETADAVLIDRLKGGIPL 65
Query: 107 QKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
K + L +++ SA + LR +A F E +Q AI E
Sbjct: 66 SKLSDITPHLKRLNIEASLSATELSEMSLVLRNTSTIA-----SFFEQMQ---DEAIGES 117
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
+R +P + L + + I +D G + D AS LK R ++ E+ +
Sbjct: 118 ----LRVLP--EQAKNLVTLPDITRQIQIAIDSSGRLNDEASYELKHVRDRINGTEQAVK 171
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSA 283
M R + + L + +I R + A+ S G ++ S G +EP +
Sbjct: 172 NQMQAYTRGKTAQYLSDPIVTIRSDRYVLPVKAEYRSQFGGVVHDQSQTGQTLYVEPQAV 231
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN++L + R E+ VL L+ + +EI + + D VNA+A +
Sbjct: 232 VTLNNKLSELRVQEQAEEQRVLQELSATLAPHTEEIANNVTILGHFDFVNAKARLAARLD 291
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
P + E + L +A+HPLL KDL
Sbjct: 292 AMQPMV----------------------NTENKVDLQQAWHPLL-----------DKDLA 318
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
AN DI + + ++ITGP
Sbjct: 319 VAN-----------------------------------------DIALGDGYKAIIITGP 337
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKTI +KT+G+ +MA+SGL I + + V F +FADIGDEQS+ QSLSTFS H+
Sbjct: 338 NTGGKTITIKTLGILQLMAQSGLFITTKRPSTVGVFHEIFADIGDEQSIEQSLSTFSSHM 397
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I ++I + ++LV+ DE+GAGT+P EG AL +++L+ A G+ + IATTH+ ELK
Sbjct: 398 ANIVSMIDRIDDKTLVIFDELGAGTDPAEGAALAIAILDKVASLGAFV-IATTHYPELKL 456
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
Y+ NA M FD LKPTY+ L GVPG+S+A+ IA+RLG V+ A L A
Sbjct: 457 YGYNRPETLNASMVFDVSTLKPTYQFLMGVPGQSNALAIAKRLGFGDDVIGAATALTSDA 516
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEH--CASQRFRKV 701
++N++I +L+ R + +H S++ +
Sbjct: 517 DQDLNQMI----------------------------ADLVAQRDAVKQHDVALSEQLKAT 548
Query: 702 QKISDA-AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVL 760
+K S+A + R L + A+ + + ++A +V +Q S+ + ++ Q
Sbjct: 549 EKQSEALSEQQRQLEKERAKIVLDAKNEANHIVAATKKQAEQMISE-IRKARLNAGQSAG 607
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
+ Q K + +S ++ K + KR + GD + V S+G++GT+IK +
Sbjct: 608 ELSEQDLQAKKRQLDGLRQNSSLEKNKILQKAKRAKQLAAGDEITVQSYGQQGTLIK-QH 666
Query: 821 SKEEIVVQVGNMKWIMKFTDIV 842
S + V++G +K ++ DIV
Sbjct: 667 SNGQWEVEMGILKMLVDEDDIV 688
>gi|385812102|ref|YP_005848493.1| DNA mismatch repair protein MutS2 [Lactobacillus fermentum CECT
5716]
gi|299783001|gb|ADJ40999.1| DNA mismatch repair protein MutS2 [Lactobacillus fermentum CECT
5716]
Length = 793
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 145/414 (35%), Positives = 223/414 (53%), Gaps = 65/414 (15%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI + + + +VITGPNTGGKTI LKT+GL +MA+SG+ I ++E + V FD+VFA
Sbjct: 319 VANDIALGKDYQAIVITGPNTGGKTITLKTLGLIQLMAQSGMFIPANENSTVAIFDNVFA 378
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQSL Q+LSTFSGH++ + I+ Q T+ SLVLLDE+GAGT+P EG AL M++L+
Sbjct: 379 DIGDEQSLEQNLSTFSGHMENVKRILEQITANSLVLLDELGAGTDPKEGAALAMAILDQI 438
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+GS + + TTH+ ELK Y NA MEFD+ L+PTY++L GVPG+S+ I IA+
Sbjct: 439 GATGSEVVV-TTHYPELKVYGYDRAKTINASMEFDQQTLQPTYRLLLGVPGQSNGIAIAK 497
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLG+ V+ A L S ++N++I +L+
Sbjct: 498 RLGIEQAVIDEASSLVSDDSQDLNKMI----------------------------GDLVE 529
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSL---VHKSAQQLCPSASQARSLVHKRAQQLR 741
R++ E ++R + + + + AA L + + +Q +ARS + Q +
Sbjct: 530 QRKRAREE--NERLQAL--VKENAATKEELDAKLDRFNEQRDKLLERARSEANHEVSQAK 585
Query: 742 PSASQSLHCTKVGKNQHVLTSNFQQTTVDKVE--------------HPATASSSVVKDIK 787
A+Q +H H+ Q TV + E +P +SV++ K
Sbjct: 586 KKANQIIH--------HLRQLEIQGATVKENELIDAQGALNALHKDNPRLNHNSVLQRAK 637
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
Q ++K VGD V+V S+G++G ++ + + VQ+G +K + D+
Sbjct: 638 QKHQLK------VGDHVNVKSYGQQGVLLN-KRGAHKWEVQLGILKMAIDEADL 684
>gi|94989196|ref|YP_597297.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS9429]
gi|94542704|gb|ABF32753.1| DNA mismatch repair protein [Streptococcus pyogenes MGAS9429]
Length = 818
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 218/381 (57%), Gaps = 45/381 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++PV D+ +VITGPNTGGKTI LKT+GLA +M +SGL +L+ + +K+ F+
Sbjct: 346 LSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQSGLPVLADKGSKITVFN 405
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
++FADIGD+QS+ QSLSTFS H+ I +I++++ SLVL DE+GAGT+P EG +L M++
Sbjct: 406 NIFADIGDDQSIEQSLSTFSSHMTHIVSILNEADRNSLVLFDELGAGTDPQEGASLAMAI 465
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +F ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 466 LEHLRLS-HIKTMATTHYPELKAYGIETNFVENASMEFDAETLSPTYRFMQGVPGRSNAF 524
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQF-LEHVHEARHFLMLSRN 677
IA RLGL +V+ A+Q+ + S ++N +I +E + +T+ L+H+ E N
Sbjct: 525 EIASRLGLAPFIVKQAKQMTDSDS-DVNRIIEQLEAQTLETRRRLDHIKEVEQ-----EN 578
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR- 736
L N R +K+ + +R ++++KI ++ AQ++ A + K+
Sbjct: 579 LKFN--RAVKKLYNEFSHERDKELEKI-----------YQEAQEIVDMALNESDTILKKL 625
Query: 737 --AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
QL+P H K Q + K+ S + V + ++ ++K
Sbjct: 626 NDKSQLKP------HEIIDAKAQ-----------IKKLAPQVDLSKNKV--LNKAKKIKA 666
Query: 795 TELPNVGDLVHVSSFGKKGTV 815
P +GD + V+S+G++GT+
Sbjct: 667 ARAPRIGDDIIVTSYGQRGTL 687
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 25/241 (10%)
Query: 119 VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL-YIRFMPLT 177
V LS + +++ + ++ L E LA+ +LQ S + I +DL + F L
Sbjct: 105 VSLSSISESLKRLELSADLNIQELLAIKKVLQSSSDM-------IHFYSDLDNVSFQSLD 157
Query: 178 QMIMQL--FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM-DMLIR 234
++ L F N ++ Q +++ G ++ ASP L++ R Q+ ER++ Q++ DML
Sbjct: 158 RLFENLEQFPN---LQGSFQAINDGGFLEHFASPELERIRRQLTNSERRVRQILQDMLKE 214
Query: 235 NEN--NESLFLEVSSIHGRLCI---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+E+L ++S GR + T +++S G++ SSSG IEP + V LN+
Sbjct: 215 KAELLSENL---IASRSGRSVLPVKNTYRNRIS--GVVHDISSSGSTVYIEPRAVVTLNE 269
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
E+ Q RA E +L ++ ++ + I + LD V A+ + T P
Sbjct: 270 EITQLRADERHEEGRILHTFSDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPK 329
Query: 349 I 349
I
Sbjct: 330 I 330
>gi|325956140|ref|YP_004286750.1| DNA mismatch repair protein MutS2 [Lactobacillus acidophilus 30SC]
gi|325332705|gb|ADZ06613.1| DNA mismatch repair protein MutS2 [Lactobacillus acidophilus 30SC]
Length = 785
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 199/681 (29%), Positives = 314/681 (46%), Gaps = 118/681 (17%)
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
D I + ++ QL V L + + + +D DG + D+AS AL + R + E ++
Sbjct: 111 DEKIDLSAIDSILDQLDVPDLLFRELKKSLDYDGEVLDTASSALARLRHDIASNEEEIKD 170
Query: 228 LMDMLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAV 284
M+ + +++ L ++ +I R I + + F G++ S+SG IEP + +
Sbjct: 171 KMNAYTKGNSSKYLSEQIVTIRDDRYVIPVKQEYRTKFGGVVHDQSASGQTLFIEPEAVL 230
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+ Q A + ++L L+ + ++D + + + +LD + A+A
Sbjct: 231 NLNNRQQNLIAQEKQEIRNILKHLSGLAREEIDSLNNIATALTRLDFLQAKAK------- 283
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
L ++MK S EP+ +K + +I L A HPL+
Sbjct: 284 ------LAKNMKAS---EPILTK------DHSINLRNARHPLI----------------- 311
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
P ++ VP DI + ++ITGPN
Sbjct: 312 -------------------------DPEKV----------VPNDIRLGDDFDTMLITGPN 336
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKTI LKT GL +MA+SGL I + E +KV F+ V+ADIGDEQS+ QSLSTFS H+
Sbjct: 337 TGGKTITLKTAGLLQLMAQSGLFIPAEEGSKVGVFEEVYADIGDEQSIEQSLSTFSSHIN 396
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I I+ ++LVL+DEIGAGT+P EG +L +S+L+ + + + + TTH+ ELK
Sbjct: 397 DIVAIMKNVNKETLVLIDEIGAGTDPEEGASLAISILDFLRQKDAKIMV-TTHYPELKLY 455
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
Y+ NA MEFD L PTY + G+PG S+A IA RLG+ VV+NA+ L
Sbjct: 456 GYNRPRTTNASMEFDLKTLSPTYHLQIGIPGHSNAFAIARRLGMREDVVKNAQNLMSDED 515
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
++IN++I ++ N + R LE + + QK+
Sbjct: 516 SDINKMISKL----------------------NAQTKAATSARNRLETSLDRSQKLEQKL 553
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
A V K QL + +A ++ KR R A Q + + KN V +
Sbjct: 554 QQALDWYNQRVQK---QLDFAQERANEIIAKR----RKKADQIIEQLEKQKNAGVKENKI 606
Query: 765 --QQTTVDKVEHPAT--ASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
+ ++ +E A A + V++ R KR +VGD V V S+G+ GT+ K +
Sbjct: 607 IEAKGELNNLERQANNLAHNKVLQ------REKRRHHVSVGDRVKVLSYGQTGTITK-KL 659
Query: 821 SKEEIVVQVGNMKWIMKFTDI 841
S+ E VQ+G +K DI
Sbjct: 660 SEHEYEVQMGIIKVKASDRDI 680
>gi|418563215|ref|ZP_13127657.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21262]
gi|371971759|gb|EHO89155.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus subsp. aureus 21262]
Length = 782
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 221/391 (56%), Gaps = 48/391 (12%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEME----RFKTQFLE---HVHEARHFLMLSRNLHKNLLRTRRKIL 690
+ G EINE+I +E R +TQ LE V EA +H +L +
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDCLVKEAEQ-------VHDDLSK------ 557
Query: 691 EHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHC 750
Q+F+ +K ++ K+ Q++ + +A ++ K +QLR +
Sbjct: 558 ---QYQQFQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKE 608
Query: 751 TKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFG 810
++ + L +++ K IKQ+ + ++ + GD V V S+G
Sbjct: 609 HELIDKKKRLDDHYE-----------------AKSIKQNIQKQKYDKIVAGDEVKVLSYG 651
Query: 811 KKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+KG V+++ + EE +VQ+G +K + D+
Sbjct: 652 QKGEVLEI-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|227498526|ref|ZP_03928670.1| mutS2 family protein [Acidaminococcus sp. D21]
gi|226903982|gb|EEH89900.1| mutS2 family protein [Acidaminococcus sp. D21]
Length = 777
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 141/405 (34%), Positives = 221/405 (54%), Gaps = 37/405 (9%)
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
LE VP+DI + + L+ITGPNTGGKT+ LKTVGL +MA++GL L +E A P
Sbjct: 309 LEQESIVPLDIELGQDFTTLLITGPNTGGKTVALKTVGLFALMAQAGL-FLPAEEAIFPV 367
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
F V+ADIGDEQS+ QSLSTFSGH+K + +II ++T + LVL+DE+ GT+P EG AL M
Sbjct: 368 FSGVYADIGDEQSIEQSLSTFSGHMKNMISIIREATDRDLVLVDEVCVGTDPTEGAALAM 427
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
+++E F ++ +LTI TTH+ ELKT Y ++ +NA +EFD L+PTY++L GVPG S+
Sbjct: 428 AMIEHFYKA-HVLTIMTTHYSELKTFAYEHEGMQNASVEFDPETLRPTYRLLMGVPGSSN 486
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A I+ RLGLP ++ AR + + V+ +E + ++ E + L +
Sbjct: 487 AFYISRRLGLPEDILDEARTFINERHSNMERVLQNLEGERREY-ESRKDEIETLRRETEI 545
Query: 679 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
+N L+ + LE + RK ++ DA + R+ + +Q + L RAQ
Sbjct: 546 LRNQLKAEKTRLEKSRNDILRKARE--DADELYRN-ARRESQGI---------LKELRAQ 593
Query: 739 QLRPSASQSLHCTKVGK-NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL 797
Q + +S ++ + ++ L+ NF + + E S +
Sbjct: 594 Q---NLVESAKVERLAEMSRKALSKNFSISGRTEPEGQGLTSGNAA-------------- 636
Query: 798 PNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
VG +V V + G++G + V + ++ V +G MK + D +
Sbjct: 637 --VGKVVFVKTLGQEGKITAV--NGRDVTVAIGVMKMNVSMKDCI 677
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 149/311 (47%), Gaps = 22/311 (7%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
++ LE+ K+ +S +A T++G+ + + S +++ +ET A+ + G
Sbjct: 5 AINTLEFTKVREKLSQYAGTAMGQRLAMELMSS--SRFEEVKLSQEETAEAVRILDEGR- 61
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKE---DADL 169
+ L G+ + + ++ R S L P E A+ Q + + L L+A +KE A
Sbjct: 62 RIPLGGI--TDISGLVKRTRVGSLLDPEEFKAI----QDAISGMLDLKAFLKEVSETAPA 115
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+R+ +L L K + V+DE G+IKD+AS L R + + ++ +
Sbjct: 116 LVRYSD------ELHDFSRLSKQLSSVLDEKGNIKDTASVKLSGLRTGILVARNRVKDKL 169
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
L+ + NN+ F + V+ R I + +L+F G++ SSSG IEP++ V
Sbjct: 170 SDLLHDPNNQKYFQDALVTMREDRYVIPIKQEYRLNFPGIVHDQSSSGATLFIEPMAVVN 229
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+++++ E +L LT + + D I + L + Q+D+++A+A Y+ + G
Sbjct: 230 LNNDIKKYVLEEKAEVERILRTLTSHVGAEADHILESLAVVAQVDLISAKALYAEALGAR 289
Query: 346 SPNIFLPQDMK 356
P + L ++
Sbjct: 290 RPMMVLDHHLR 300
>gi|218288876|ref|ZP_03493127.1| MutS2 family protein [Alicyclobacillus acidocaldarius LAA1]
gi|218240965|gb|EED08142.1| MutS2 family protein [Alicyclobacillus acidocaldarius LAA1]
Length = 776
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/397 (33%), Positives = 213/397 (53%), Gaps = 36/397 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + + R+L+ITGPNTGGKT+ LKT+GL +M SGL + + +++ + VF
Sbjct: 313 VPIDVELGERFRLLIITGPNTGGKTVTLKTIGLLTLMGMSGLFLPTKRESEIGFCRHVFV 372
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ Q+LSTFS H+++I +++ + T SLVLLDE+GAGT+P EG+AL +++L+
Sbjct: 373 DIGDEQSIEQNLSTFSSHMRRIIDMLERVTEDSLVLLDELGAGTDPAEGSALAIAILDHL 432
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK + N ENA MEFD L+PTY++L GVPGRS+A+ IAE
Sbjct: 433 TSVGARV-VATTHYAELKGYAFRNPAAENASMEFDVETLRPTYRLLMGVPGRSNALAIAE 491
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLG+P +++ AR + + ++I ++E + EA L +R+ +L R
Sbjct: 492 RLGMPKEILERARSHVAESDIHVEDLIGKLEAASREAELMRDEAERALREARDKEADLAR 551
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ A+ K AA AR ++ ++ ++ + RSL + A
Sbjct: 552 QK-------AAWEASKDSMREQAAREAREVIERARREADAVIREIRSLRDRAAV------ 598
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
K+ ++ + + E A +++ RV+
Sbjct: 599 ----------KDHELVELRKRLEAAEPGEKRAAPRRRAQAEVRPGQRVR----------- 637
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V S G+KG V++V VVQ+G M+ + D+
Sbjct: 638 -VLSLGQKGDVVEVAQDGRAAVVQLGAMRMKVDARDL 673
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 8/164 (4%)
Query: 191 KSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHG 250
+ I QVVDEDG + D ASP L + R + + E ++ ++D L+R + +L+ I
Sbjct: 133 QEIRQVVDEDGQVIDHASPTLLRLRDEKRRREGEIRSVLDRLLRTQAK---YLQEPVIAM 189
Query: 251 R---LCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R C+ + S G++ SSSG IEP + V L++ +++ + E +L
Sbjct: 190 RGEHYCLPVRVEHKSQIPGMVRDVSSSGSTVFIEPRAIVELSERVRELEVLEEREVERLL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L + D+ + LN ++D V A+ATY+ G P +
Sbjct: 250 YELAAAVAQVADDFLRNLNVAAEMDFVFAKATYARRVDGKRPRL 293
>gi|379011153|ref|YP_005268965.1| MutS-like protein [Acetobacterium woodii DSM 1030]
gi|375301942|gb|AFA48076.1| MutS-like protein [Acetobacterium woodii DSM 1030]
Length = 789
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 213/804 (26%), Positives = 363/804 (45%), Gaps = 136/804 (16%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREAT-----LTQLWSINQTYQDSLRLLDETNAAIEMQ 107
SL+VLE+ K+ + + T G+E L L ++N R LD TN ++ M
Sbjct: 5 SLKVLEYHKILKILEDYCVTQGGKEQAGQLLPLETLTAVN-------RSLDLTNESLGMM 57
Query: 108 -KHGSCSL-DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKE 165
++G L D+ + ++AI S L E LA+ LL+ S + +
Sbjct: 58 LRNGRPPLSDVPNTSDYVKRAAI-----GSMLSMKELLAIATLLRISRDMDNYYHGDTQM 112
Query: 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
D + L + L L K I + + + D+AS L + R ++Q +++
Sbjct: 113 DT-----LILLKDLFTSLETCEELEKEISRKILGPEEMADNASRELSRIRREMQFKYKRI 167
Query: 226 YQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPL 281
+ ++ +I + + + + E V+ + R I + S G++L S+SG IEP+
Sbjct: 168 SEKLNHMISSTSYDKMLQEKIVTIRNNRYVIPVKQEYRSQVPGIVLDKSASGATLFIEPI 227
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ V LN++++ A + +L L++ + DEI + +I LD A+ Y L+
Sbjct: 228 AVVELNNDIKILVAEEEQEIVRILKELSQNVADQRDEIICNYDILIDLDFQFAKGKYGLA 287
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
G V + VS + R I L +A HPL+
Sbjct: 288 ING-------------------VKTDVSETGR---IALLRAKHPLI-------------- 311
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
P E V++ DI+ + +VIT
Sbjct: 312 -----------------------------PDEQVVAS---------DIYFEEEIDTMVIT 333
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKT+ LKT+GL +M +SGL I E +K F ++FADIGDEQS+ Q+LSTFS
Sbjct: 334 GPNTGGKTVSLKTIGLLNLMVQSGLFIPVREGSKTRIFTNIFADIGDEQSIEQNLSTFSS 393
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+ I I++++ SLVL DE+GAGT+P EG AL +S+L A + +I+TTH+ EL
Sbjct: 394 HMTNIVEIMNKADHDSLVLFDELGAGTDPTEGAALAISILNAL-HLRHVTSISTTHYSEL 452
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K NA +EFD L+PTY++L GVPG+S+A IA RLGL V++NA++L
Sbjct: 453 KEFALVTPGVVNASVEFDIKTLRPTYRLLIGVPGKSNAFEIAVRLGLAETVIENAKELIK 512
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
+ E +I+++ K + E H+A ++R +R E Q R+
Sbjct: 513 NEAIRFEETLIKIDE-KRRRTEAEHDA-------------IIRLKRDT-EELKRQMDREK 557
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTK----VGKNQ 757
++ + + + + A ++ + +++ + ++ + + ++ K + K
Sbjct: 558 ERFDEEKQVLIAKAQEEAMEIVKKTREETEAIYREIRTIQETTTNAVKDNKELEAIRKRI 617
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
N Q E+ A + DI ++G V+++S ++G VIK
Sbjct: 618 KEKEKNIYQFGNQPKEYQGQALE--MDDI------------SIGMKVYINSLRREGEVIK 663
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ P++ + +VQ +K + D+
Sbjct: 664 LIPNENKAMVQSEMIKLKVAVGDL 687
>gi|255281368|ref|ZP_05345923.1| DNA mismatch repair protein MutS [Bryantella formatexigens DSM
14469]
gi|255268325|gb|EET61530.1| MutS2 family protein [Marvinbryantia formatexigens DSM 14469]
Length = 792
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 136/406 (33%), Positives = 223/406 (54%), Gaps = 37/406 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPIDI + + +L+ITGPNTGGKT+ LKTVGL +M +SGLHI + + +++ FD VFA
Sbjct: 316 VPIDIRLGQDFDLLIITGPNTGGKTVSLKTVGLFTLMGQSGLHIPAFDGSELAVFDDVFA 375
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +++L
Sbjct: 376 DIGDEQSIEQSLSTFSAHMTNIVSILKEANERSLVLFDELGAGTDPTEGAALAIAVLSNL 435
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G + T+ATTH+ ELK S EN C EF+ L+PTY++L G+PG+S+A I+
Sbjct: 436 HRQG-IRTMATTHYSELKVFALSTPGVENGCCEFNVETLRPTYRLLIGIPGKSNAFAISA 494
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
+LGLP +++ AR+ + +I ++E + E H+
Sbjct: 495 KLGLPEDIIEEAREQLSQQDEDFESLISDLETSRVTIEREREEINHY------------- 541
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
++ +E QR + Q+ DA S +++ A++ + + A++ +
Sbjct: 542 --KEEIERL-KQRLEQKQETLDA----------SRERILREANEQAHAILREAKEYADTT 588
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP-RVKRTELPNVGDL 803
++ + K GK Q + + +Q E ++ ++ +++P + + + ++GD
Sbjct: 589 IKNFN--KFGK-QGIDSRAMEQERSRLREKMSSVEKNLAIKTQRAPAKTLQAKDLHLGDS 645
Query: 804 VHVSSFGKKGTVIKVEPSKEEIVVQVG------NMKWIMKFTDIVT 843
V V S KGTV + +K ++ VQ+G N+K + K D+ T
Sbjct: 646 VRVLSMNLKGTVSTLPNAKGDLFVQMGILRSQVNIKDLEKIADVET 691
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/304 (25%), Positives = 147/304 (48%), Gaps = 27/304 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLD-ETNAAIEM-QKHGS 111
L+ LE+ K+ ++ A ++ G+E L S + + +R+L ET+ A+ M + G
Sbjct: 6 LKTLEYHKIIDRLTELAGSTPGKELCKNLLPSSDI---EEIRMLQAETSLALSMLYQKGH 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDAD--- 168
S +GV + ++ +++ + S L P E LA+ LL+ + ++ R E+
Sbjct: 63 VSF--SGV--TNIRGSLKRLEVGSILSPAELLAICRLLEVTNRVKAYSRKENSEEEPNAL 118
Query: 169 --LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
++ PLT L I + + + I D ASPAL+ R ++ + K++
Sbjct: 119 DVMFEALQPLT----------PLANEIRRCLPSEEEISDDASPALRSIRRAMRQMNDKVH 168
Query: 227 QLMDMLIRNENNESLFLEVSSI-HGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSA 283
++ ++ L V ++ +GR C+ A+ + +G++ SS+G IEP++
Sbjct: 169 AQLNSMVNGSAKAYLQDAVVTMRNGRYCLPVKAEYRGQVQGMIHDQSSTGSTLFIEPMAV 228
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
+ LN+EL++ K E +L L+ + V+ + +E L + +LD + ARA S S+
Sbjct: 229 IKLNNELRELEIKEEKEIEVILANLSGQAGVEQEALESNLTLLTKLDFIFARAQLSKSYD 288
Query: 344 GTSP 347
G+ P
Sbjct: 289 GSEP 292
>gi|433655413|ref|YP_007299121.1| MutS2 family protein [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433293602|gb|AGB19424.1| MutS2 family protein [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 786
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/211 (50%), Positives = 143/211 (67%), Gaps = 1/211 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI +++ LVITGPNTGGKT+ LKTVGL +MA SGL+I + E + V +FD++F
Sbjct: 314 VPISVYLGDSFDTLVITGPNTGGKTVTLKTVGLLTLMAMSGLNIPTDEGSSVAFFDNIFV 373
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I++ TS SLVLLDE+GAGT+P EG AL MS+L+ F
Sbjct: 374 DIGDEQSIEQSLSTFSAHMTNIVTILNSVTSNSLVLLDELGAGTDPTEGAALAMSILD-F 432
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ TIATTH+ ELK ND ENA +EFD L+PTY++ G+PG+S+A I+
Sbjct: 433 LHRINCRTIATTHYSELKQYALKNDGVENASVEFDVETLRPTYRLTIGIPGKSNAFEISR 492
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEME 655
RLGL ++ NAR + ++I ++E
Sbjct: 493 RLGLNEEIIDNARNYITNEELKFEDIIKDLE 523
Score = 79.3 bits (194), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 146/297 (49%), Gaps = 15/297 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
R LE+DK+ + + + + G+E L N + + +D+ N A+ + +G+
Sbjct: 6 FRNLEFDKIVNHIVNLCDSEPGKEMALDIKPYDN--LDKAAKEIDKVNEAVSFISSYGNM 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
S +D L K+ I+ S L + + + L + ++ LR+ KE+++
Sbjct: 64 SFAFKKIDDILNKAKIK-----STLNIGQLMTISRFLSLAGRVKSYLRSE-KEESN---- 113
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
+ L + ++L R L + I ++V + + D ASPALK R Q + K+ ++ +
Sbjct: 114 YPLLREYNIRLTNLRDLYERIDRIVISEDELSDDASPALKDIRRQKAHINNKIKDTLNYI 173
Query: 233 IRNENNESLFLEVSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDEL 290
I + + E ++ +GR + + + +FKGL+ SSSG IEP++ V LN++L
Sbjct: 174 IASSSKELQDPIITIRNGRYVVPVKQEYRGTFKGLIHDQSSSGATLFIEPMTVVELNNDL 233
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+Q + E +L LT+ + + EI + + + +LDV+ A+A YS++ + P
Sbjct: 234 RQLEIKEQQEIEKILSELTDDISQHISEIHENMIALTELDVIFAKAKYSINTNSSKP 290
>gi|302384796|ref|YP_003820618.1| MutS2 family protein [Clostridium saccharolyticum WM1]
gi|302195424|gb|ADL02995.1| MutS2 family protein [Clostridium saccharolyticum WM1]
Length = 796
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 147/422 (34%), Positives = 218/422 (51%), Gaps = 78/422 (18%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI I + R +L++TGPNTGGKT+ LKTVGL +M +SGLHI + + +++ FD VFA
Sbjct: 315 VPITIHLGRDFDLLIVTGPNTGGKTVSLKTVGLFTLMGQSGLHIPAFDGSELAVFDEVFA 374
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ Q+ S SL L DE+GAGT+P EG AL +S+L +F
Sbjct: 375 DIGDEQSIEQSLSTFSAHMTNIVHILGQADSNSLCLFDELGAGTDPTEGAALAISIL-SF 433
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ T+ATTH+ ELK + ENAC EF+ LKPTY++L GVPG+S+A I++
Sbjct: 434 LHNMKCRTMATTHYSELKVFALTTPGVENACCEFNVETLKPTYRLLIGVPGKSNAFAISQ 493
Query: 625 RLGLPGIVVQNARQLYGAASA---------EINEVIIEMERFK---------------TQ 660
+LGLP ++ +A+ A E N V IE ER + TQ
Sbjct: 494 KLGLPDYIIDDAKTHLEAKDETFEDLLTHLEENRVTIEKERIQIASYKLEVEQLKTRLTQ 553
Query: 661 FLEHVHEAR-HFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSA 719
E + E R H + ++ + +LR ++ A Q R + K++ + +A+ L A
Sbjct: 554 KEERLDERRDHMIREAKEEAQRILRDAKE----TADQTIRSINKLAADSGVAKEL---EA 606
Query: 720 QQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATAS 779
Q RS + + Q + S S + GK +D
Sbjct: 607 Q---------RSKLRNKLQDVDSSLSLKNEKKQPGKQ------------ID--------- 636
Query: 780 SSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFT 839
PR + +GD V V S GTV + +K ++ VQ+G ++ ++ +
Sbjct: 637 ----------PRKLK-----LGDGVKVLSMNLNGTVSSLPNAKGDLYVQMGILRSLVNLS 681
Query: 840 DI 841
D+
Sbjct: 682 DL 683
Score = 63.5 bits (153), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 143/317 (45%), Gaps = 45/317 (14%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDET-NAAIEMQKHG 110
++L+ LE+ K+ ++ +A + G+E + S + Y + +R ET +AA +++ G
Sbjct: 4 KALKTLEYHKIITQLAQYASSDSGKELCRNLIPSTD--YHEIVRAQQETTDAATRVRQKG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRA-SPLRPNEALAVVALLQFSETLQLSLRAAI---KED 166
S S +R++R + L AL + +L S L +S R ED
Sbjct: 62 SISF-----------GGVRDIRPSLKRLDVGSALGMAEILSISSLLTVSARVKAYGRHED 110
Query: 167 ADL--------YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQV 218
++L + PLT VN + + I+ + + D ASP L R +
Sbjct: 111 SELPEDSLEESFRMLEPLTP------VNTEIKRCILS----EEEVSDDASPGLHHVRRSM 160
Query: 219 QMLERKLYQLMDMLIRNENNESLFLEVSSI---HGRLCIRTGADQLSFKGLLLSSSSGIG 275
+ + K++ ++ ++ N+ +L+ + I GR C+ ++ S ++ S G
Sbjct: 161 RSINDKIHTQLNSIL---NSNRTYLQDAVITMRDGRYCLPVKSEHKSQVSGMVHDQSSTG 217
Query: 276 SV--IEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVN 333
S IEP++ V LN++L+ K E VL L+ ++ L+E+E + +LD +
Sbjct: 218 STLFIEPMAIVKLNNDLRALEIQEQKEIEMVLADLSNQLAPYLNELETDFEILTKLDFIF 277
Query: 334 ARATYSLSFGGTSPNIF 350
A+A S + + P IF
Sbjct: 278 AKAALSKHYNASEP-IF 293
>gi|422822015|ref|ZP_16870208.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK353]
gi|324990320|gb|EGC22258.1| DNA mismatch repair protein MutS [Streptococcus sanguinis SK353]
Length = 777
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 217/392 (55%), Gaps = 44/392 (11%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
E + L + HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL
Sbjct: 294 EQDIQLLSVRHPLIENAVANDLHFGPDLIEIVITGPNTGGKTIMLKTLGLAQIMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V F +FAD+GDEQS+ QSLSTFS H+ I +I+ Q S+SLVLLDE+GAG
Sbjct: 354 ILADKGSRVGIFSQIFADVGDEQSIEQSLSTFSSHMTNIVSILEQVDSESLVLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY
Sbjct: 414 TDPQEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA RLGL ++V +A++ S ++N +I ER + Q LE
Sbjct: 473 RFMQGVPGRSNAFEIARRLGLSELIVSHAQEQTDTDS-DVNRII---ERLEEQTLESRKR 528
Query: 668 ARHFLMLSR-NLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
+ + + NL N R +K+ ++ ++ K AQ++ A
Sbjct: 529 LDNICEVEQENLKFN--RALKKLYNEFNREKETELNK-----------ARLEAQEIVDLA 575
Query: 727 -SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKD 785
S++ S++ ++LH K ++ + Q + P T S K
Sbjct: 576 LSESESIL------------KNLHDKSSLKPHEIIEAKAQLKKL----APETVDLSKNKV 619
Query: 786 IKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
+KQ+ K+ P VGD + V+S+G++GT++K
Sbjct: 620 LKQA---KKNRAPKVGDDILVTSYGQRGTLVK 648
Score = 43.5 bits (101), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLC 253
+Q V++ G I+ AS +L + R ++Q E ++ +++ +++N+ V+S +GR
Sbjct: 134 LQAVNDGGFIESFASESLSRIRRKIQENENQVREILQEILKNKGEMLADQVVASRNGRNV 193
Query: 254 I---RTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ T +++S G++ S+SG IEP + V LN+E+ +RA + +L L+
Sbjct: 194 LPVKNTYRNRIS--GVVHDISASGNTVYIEPRAVVNLNEEIASSRADERYEIQRILQELS 251
Query: 310 EKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+ + EI I LD+V A+ + G P++ QD++
Sbjct: 252 DLFRPHAAEIANNAWIIGHLDLVRAKVRFMQETGAVVPDLSEEQDIQ 298
>gi|449916866|ref|ZP_21797070.1| putative DNA mismatch repair protein MutS2 [Streptococcus mutans
15JP3]
gi|449154753|gb|EMB58310.1| putative DNA mismatch repair protein MutS2 [Streptococcus mutans
15JP3]
Length = 776
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 172/297 (57%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDITAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAKSDFILKNLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFTHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGANLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVIHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|339639945|ref|ZP_08661389.1| MutS2 family protein [Streptococcus sp. oral taxon 056 str. F0418]
gi|339453214|gb|EGP65829.1| MutS2 family protein [Streptococcus sp. oral taxon 056 str. F0418]
Length = 777
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 148/387 (38%), Positives = 213/387 (55%), Gaps = 40/387 (10%)
Query: 436 VSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS 490
+ L+ HP V D+ +VITGPNTGGKTI LKT+GLA +MA+SGL IL+
Sbjct: 297 IQLLQARHPLIENAVANDLHFGSNLTEIVITGPNTGGKTIMLKTLGLAQIMAQSGLPILA 356
Query: 491 SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 550
+ + V F +FADIGDEQS+ QSLSTFS H+ I +I+ Q S SLVLLDE+GAGT+P
Sbjct: 357 DKGSCVGIFSQIFADIGDEQSIEQSLSTFSSHMTNIVSILEQVDSDSLVLLDELGAGTDP 416
Query: 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKIL 610
EG AL +++LE + T+ATTH+ ELK D+ ENA MEFD L+PTY+ +
Sbjct: 417 QEGAALAIAILEDL-RLRQIKTMATTHYPELKAYGIETDWVENASMEFDTDSLRPTYRFM 475
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
GVPGRS+A IA RLGL ++V +A++ S ++N++I ER + Q L E+R
Sbjct: 476 QGVPGRSNAFEIARRLGLSEVIVGHAQEQTDTDS-DVNQII---ERLEEQTL----ESRK 527
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
L R + + L+ R + + K +++ A A+ +V L S S+
Sbjct: 528 RLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSESE-- 580
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
S ++LH K V+ + Q + P S K +KQ+
Sbjct: 581 ------------SILKNLHDKSSLKPHEVIEAKAQLKKL----APEVVDLSKNKVLKQA- 623
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVIK 817
K+ P VGD + V+S+G++GT++K
Sbjct: 624 --KKNRAPKVGDDIQVTSYGQRGTLVK 648
>gi|384459066|ref|YP_005671486.1| recombination and DNA strand exchange inhibitor protein
[Clostridium acetobutylicum EA 2018]
gi|325509755|gb|ADZ21391.1| recombination and DNA strand exchange inhibitor protein
[Clostridium acetobutylicum EA 2018]
Length = 806
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/413 (34%), Positives = 224/413 (54%), Gaps = 55/413 (13%)
Query: 442 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS 501
A VP++I++ R+ LVITGPNTGGKT+ LKT GL +MA SGL I + E + + +F
Sbjct: 330 AKVVPLNIYMGREFTSLVITGPNTGGKTVTLKTTGLLEVMAMSGLMIPARENSTISFFKE 389
Query: 502 VFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 561
V+ADIGDEQS+ QSLSTFS H+ I II + SLVL DE+GAGT+P EG AL +S+L
Sbjct: 390 VYADIGDEQSIEQSLSTFSSHMTNIVRIIDDADEDSLVLFDELGAGTDPTEGAALAISIL 449
Query: 562 EAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAIN 621
EA + G+ + +ATTH+ ELK + ENA +EFD L+PTY++L G+PG+S+A
Sbjct: 450 EALRKRGTKI-VATTHYSELKAYALKTENVENASVEFDVETLRPTYRLLIGIPGKSNAFE 508
Query: 622 IAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFL--------M 673
I++RLGL +++ AR+ + E ++I ++ + E++ +A FL
Sbjct: 509 ISKRLGLSDYIIEEARKGISKDTLEFEDLIQNLQTRSVKAEENLRKA-EFLKEQAEKFKE 567
Query: 674 LSRNLHKNLLRTRRKILEHCASQRFRKV--QKISDAAAIARSLVHKSAQQLCPSASQARS 731
++ TR K L H + +K+ + S+A I + + + ++L S S+AR
Sbjct: 568 KYEEKVSSITETREKAL-HEGRREAKKIIEEAKSEADKILKDM--REMERLGYS-SEARQ 623
Query: 732 LVHKRAQQLRP---SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
+ + Q+L+ +A +SL+ ++ + + +K +K+
Sbjct: 624 RLQESRQKLKEKLNNAEESLNISERDQGE------------------------ALKSVKE 659
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
G+ V + S KG VI + SK E+ +Q G MK +K D+
Sbjct: 660 ------------GEEVFIPSLNMKGIVISTQDSKGEVGIQAGIMKINVKLKDL 700
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 147/314 (46%), Gaps = 30/314 (9%)
Query: 47 SRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM 106
++V +SLRVLE+ K+ + + TS ++ + +L Y+ ++ET A E+
Sbjct: 17 NKVNEKSLRVLEYFKIKDGIKKYISTSAAKK-LIDELEPYGSLYEVK-EHIEETKEAFEL 74
Query: 107 -QKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKE 165
K G+ + D V A+ + L P + L V ++L+ + + + + KE
Sbjct: 75 LMKKGAPPFE-GAYD---VTEAVSMAEKGFSLAPGQLLKVGSMLRCARKFKEYI--SHKE 128
Query: 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
+ + Y + I+ L +++ +I + + I D AS AL R ++ +
Sbjct: 129 EEESYRIIEDICSGIIPL---KNIEDNIFNAIIGEEEISDKASTALYSIRRSLKDKNASI 185
Query: 226 YQLMDMLIRNENN---ESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIE 279
++ ++R+ + E+L+ +I G R I A+ + GL+ SS+G IE
Sbjct: 186 KDKVNAMMRSYSKYLQENLY----TIRGERYVIPVKAEYKAQVPGLVHDQSSTGATLFIE 241
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLL----ALTEKMQVDLDEIEKMLNGIIQLDVVNAR 335
P+ V LN+E+++ KAE + +L AL K V + EK+ + +LD + A+
Sbjct: 242 PMGLVNLNNEIKELMLK-EKAEIERILRELSALIYKSIVAVKNNEKI---VTELDFIFAK 297
Query: 336 ATYSLSFGGTSPNI 349
A Y+ S T+P++
Sbjct: 298 AKYASSINATAPHV 311
>gi|352684296|ref|YP_004896281.1| mutS2 family protein [Acidaminococcus intestini RyC-MR95]
gi|350278951|gb|AEQ22141.1| mutS2 family protein [Acidaminococcus intestini RyC-MR95]
Length = 790
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 141/405 (34%), Positives = 221/405 (54%), Gaps = 37/405 (9%)
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
LE VP+DI + + L+ITGPNTGGKT+ LKTVGL +MA++GL L +E A P
Sbjct: 309 LEQESIVPLDIELGQDFTTLLITGPNTGGKTVALKTVGLFALMAQAGL-FLPAEEAIFPV 367
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
F V+ADIGDEQS+ QSLSTFSGH+K + +II ++T + LVL+DE+ GT+P EG AL M
Sbjct: 368 FSGVYADIGDEQSIEQSLSTFSGHMKNMISIIREATDRDLVLVDEVCVGTDPTEGAALAM 427
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
+++E F ++ +LTI TTH+ ELKT Y ++ +NA +EFD L+PTY++L GVPG S+
Sbjct: 428 AMIEHFYKA-HVLTIMTTHYSELKTFAYEHEGMQNASVEFDPETLRPTYRLLMGVPGSSN 486
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A I+ RLGLP ++ AR + + V+ +E + ++ E + L +
Sbjct: 487 AFYISRRLGLPEDILDEARTFINERHSNMERVLQNLEGERREY-ESRKDEIETLRRETEI 545
Query: 679 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
+N L+ + LE + RK ++ DA + R+ + +Q + L RAQ
Sbjct: 546 LRNQLKAEKTRLEKSRNDILRKARE--DADELYRN-ARRESQGI---------LKELRAQ 593
Query: 739 QLRPSASQSLHCTKVGK-NQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTEL 797
Q + +S ++ + ++ L+ NF + + E S +
Sbjct: 594 Q---NLVESAKVERLAEMSRKALSKNFSISGRTEPEGQGLTSGNAA-------------- 636
Query: 798 PNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
VG +V V + G++G + V + ++ V +G MK + D +
Sbjct: 637 --VGKVVFVKTLGQEGKITAV--NGRDVTVAIGVMKMNVSMKDCI 677
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 149/311 (47%), Gaps = 22/311 (7%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
++ LE+ K+ +S +A T++G+ + + S +++ +ET A+ + G
Sbjct: 5 AINTLEFTKVREKLSQYAGTAMGQRLAMELMSS--SRFEEVKLSQEETAEAVRILDEGR- 61
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKE---DADL 169
+ L G+ + + ++ R S L P E A+ Q + + L L+A +KE A
Sbjct: 62 RIPLGGI--TDISGLVKRTRVGSLLDPEEFKAI----QDAISGMLDLKAFLKEVSETAPA 115
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+R+ +L L K + V+DE G+IKD+AS L R + + ++ +
Sbjct: 116 LVRYSD------ELHDFSRLSKQLSSVLDEKGNIKDTASVKLSGLRTGILVARNRVKDKL 169
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
L+ + NN+ F + V+ R I + +L+F G++ SSSG IEP++ V
Sbjct: 170 SDLLHDPNNQKYFQDALVTMREDRYVIPIKQEYRLNFPGIVHDQSSSGATLFIEPMAVVN 229
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+++++ E +L LT + + D I + L + Q+D+++A+A Y+ + G
Sbjct: 230 LNNDIKKYVLEEKAEVERILRTLTSHVGAEADHILESLAVVAQVDLISAKALYAEALGAR 289
Query: 346 SPNIFLPQDMK 356
P + L ++
Sbjct: 290 RPMMVLDHHLR 300
>gi|20808111|ref|NP_623282.1| recombination and DNA strand exchange inhibitor protein
[Thermoanaerobacter tengcongensis MB4]
gi|254479026|ref|ZP_05092382.1| MutS2 family protein [Carboxydibrachium pacificum DSM 12653]
gi|23821879|sp|Q8R9D0.1|MUTS2_THETN RecName: Full=MutS2 protein
gi|20516697|gb|AAM24886.1| MutS-like ATPases involved in mismatch repair, family 1
[Thermoanaerobacter tengcongensis MB4]
gi|214035022|gb|EEB75740.1| MutS2 family protein [Carboxydibrachium pacificum DSM 12653]
Length = 790
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 152/223 (68%), Gaps = 2/223 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPIDI I R+ LVITGPNTGGKT+ LKTVGL +MA +G++I + E +++ F+ VF
Sbjct: 317 VPIDIHIGREFTTLVITGPNTGGKTVTLKTVGLLTLMAMAGINIPAEEKSQISIFEDVFV 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ + SLVLLDE+GAGT+PLEG+AL MS+L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVSILKKVNKNSLVLLDELGAGTDPLEGSALAMSILDFL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+G TIATTH+ ELK ENA +EFD L+PTY+++ G+PGRS+A I+
Sbjct: 437 HRTGC-RTIATTHYSELKQYALKTKGVENASVEFDVETLRPTYRLIIGIPGRSNAFEISR 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
RLGL +++NA+ + +VI ++E K + LE+ ++
Sbjct: 496 RLGLSEEIIENAKSYMSGEAIRFEDVIKDVEE-KRKDLENAYQ 537
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 137/303 (45%), Gaps = 19/303 (6%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHG 110
++L+ LE+DK+ +++ + LGRE I + + LD N A++ + +G
Sbjct: 7 KTLKSLEFDKIVKLIANECDSELGREKVFD--IEIKKDLKAIEFELDLLNEAVKFIYSYG 64
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
S + + K+ I + L E L + L E ++ ++ LY
Sbjct: 65 DISFSFQDIREHVKKAQIDYI-----LYNRELLGIKNFLSLVEEVKAHFKS-------LY 112
Query: 171 IR--FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
R F+ L + +L +SL + I V + I D ASP LK R Q + K+
Sbjct: 113 DREDFLLLKEFDKRLVPLKSLKEKIENTVISEDEISDEASPVLKAIRRQKASINEKIKST 172
Query: 229 MDMLIRNENNESLFLEVSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPL 286
++ +I E ++ GR + + + FKG++ SS+G IEP+ V L
Sbjct: 173 LNSIISTRQKELQEPIITMRQGRYVVPVKQEYRNVFKGIIHDQSSTGATLFIEPIQVVDL 232
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+EL++ K E +L L+++++ + + I K + + +LD + A+A YS+ +
Sbjct: 233 NNELRELELKEQKEIERILFELSQEVKKNAEAIFKDVEVVSELDFLFAKARYSIKIKASR 292
Query: 347 PNI 349
P +
Sbjct: 293 PEL 295
>gi|306834300|ref|ZP_07467417.1| DNA mismatch repair protein MutS [Streptococcus bovis ATCC 700338]
gi|304423473|gb|EFM26622.1| DNA mismatch repair protein MutS [Streptococcus bovis ATCC 700338]
Length = 778
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 220/397 (55%), Gaps = 37/397 (9%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L PV D+ + V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + +KV F+
Sbjct: 307 LTDPVANDLHFLDELTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSKVAVFN 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + SLVL+DE+GAGT+P EG +L +++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTNIVEILAAADKDSLVLVDELGAGTDPQEGASLAIAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE + T+ATTH+ ELK +F ENA MEFD L PTY + GVPGRS+A
Sbjct: 427 LEHL-RLMEIKTMATTHYPELKAYGIETEFVENASMEFDTETLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A +L + ++N +I +E E HE+R L + + +
Sbjct: 486 EIARRLGLAEIIVNEAERLTD-SDTDVNHIIERLE-------EQNHESRKRLDHIKEVEQ 537
Query: 681 NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQL 740
+ L+ R + + K +++ A A A+ +V K+ + S ++L H RA L
Sbjct: 538 DNLKFNRAVKKLYNEFSHAKDKELEKARAKAQEIVDKA---MTESEEILKNL-HDRA-SL 592
Query: 741 RPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+P H K+Q + K+ S + V + R P V
Sbjct: 593 KP------HEVIEAKSQ-----------LKKLAPEVDLSKNKVLKKAKKLRA-----PRV 630
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
GD + V+++G++GT++ + + VQVG +K +K
Sbjct: 631 GDDIVVTAYGQRGTLVN-QGKNGKWEVQVGLIKMTLK 666
>gi|450073612|ref|ZP_21849057.1| putative DNA mismatch repair protein [Streptococcus mutans M2A]
gi|449210027|gb|EMC10514.1| putative DNA mismatch repair protein [Streptococcus mutans M2A]
Length = 776
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 172/297 (57%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++P+ D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNPIANDLHFEHDTTAILITGPNTGGKTIMLKTLGITQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELHKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKIETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNSAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|258512089|ref|YP_003185523.1| MutS2 family protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257478815|gb|ACV59134.1| MutS2 family protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 776
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 133/397 (33%), Positives = 212/397 (53%), Gaps = 36/397 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + + R+L+ITGPNTGGKT+ LKT+GL +M SGL + + + + + VF
Sbjct: 313 VPIDVELGDRFRLLIITGPNTGGKTVTLKTIGLLTLMGMSGLFLPTKRESDIGFCRHVFV 372
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ Q+LSTFS H+++I +++ + T SLVLLDE+GAGT+P EG+AL +++L+
Sbjct: 373 DIGDEQSIEQNLSTFSSHMRRIIDMLERVTPDSLVLLDELGAGTDPAEGSALAIAILDHL 432
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK + N ENA MEFD L+PTY++L GVPGRS+A+ IAE
Sbjct: 433 TSVGARV-VATTHYAELKGYAFRNPAAENASMEFDVETLRPTYRLLMGVPGRSNALAIAE 491
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLG+P +++ AR + + ++I ++E + EA L +R+ +L R
Sbjct: 492 RLGMPKEILERARSHVAESDIHVEDLIGKLEAASREAERMRDEAEQALREARDQAADLAR 551
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ A+ K AA AR ++ ++ ++ + RSL + A
Sbjct: 552 QK-------AAWEASKDSMREQAAREAREVIERARREADAVIREIRSLRDRAAV------ 598
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
K+ ++ + + E A +++ RV+
Sbjct: 599 ----------KDHELVELRKRLEAAEPGEKRAAPRRRAQAEVRPGQRVR----------- 637
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V S G+KG V++V VVQ+G M+ + D+
Sbjct: 638 -VLSLGQKGDVVEVAQDGRAAVVQLGAMRMKVDARDL 673
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 136/311 (43%), Gaps = 36/311 (11%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGR-EATLTQLWSINQTYQDSLRLLDETNAAIEM-QKHG 110
+L LE++ + ++ A+TSLG+ A+ ++ + L LDE A+ M + G
Sbjct: 5 ALDALEYEDVRGEIAKCAQTSLGQARASAMVPFAERADAEAELARLDE---AVRMLYRVG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEA-------LAVVALLQFSETLQLSLRAAI 163
+ + ++ ++ RR + +EA + A+ QF E RAA
Sbjct: 62 APPF----AGIESLEEVVQRARRGGTISADEANRLARCIAGMRAMRQFVE------RAAE 111
Query: 164 KEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
D F L + + R + I QVVDEDG + D ASP L + R + + E
Sbjct: 112 GGD------FPLLASSVAPMADLRRTEQEIRQVVDEDGQVIDHASPTLLRLRDEKRRREA 165
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIHGR---LCIRTGADQLS-FKGLLLS-SSSGIGSVI 278
++ ++D L+R + +L+ I R C+ + S G++ SSSG I
Sbjct: 166 EIRTVLDRLLRTQAK---YLQEPVIAMRGEHYCLPVRVEHKSQIPGMVRDVSSSGSTVFI 222
Query: 279 EPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATY 338
EP + V L++ +++ + E +L L + D+ + LN ++D V A+A Y
Sbjct: 223 EPRAIVELSERVRELEVLEEREVERLLYQLAAAVAQVADDFLRNLNVAAEMDFVFAKAAY 282
Query: 339 SLSFGGTSPNI 349
+ G P +
Sbjct: 283 ARRVDGKRPRL 293
>gi|152976937|ref|YP_001376454.1| recombination and DNA strand exchange inhibitor protein [Bacillus
cytotoxicus NVH 391-98]
gi|189030426|sp|A7GTK1.1|MUTS2_BACCN RecName: Full=MutS2 protein
gi|152025689|gb|ABS23459.1| MutS2 family protein [Bacillus cytotoxicus NVH 391-98]
Length = 786
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 144/399 (36%), Positives = 220/399 (55%), Gaps = 35/399 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI E +++ F ++FA
Sbjct: 318 VPNDIVLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVQEESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 HNRGARV-VATTHYPELKAYGYNRNQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + EA S LH+ L
Sbjct: 497 RLGLSERVINRARNHISTDTNKIENMIAKLEESQKNAERDWKEAEELRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K Q K ++ +A + + + +QLR
Sbjct: 555 -QRQIIEFNEERDERLLKAQ--------------KEGEEKVEAAKKEAEAIIRELRQLRK 599
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGD 802
+ ++ K+ ++ + ++E A K ++ K+ P GD
Sbjct: 600 AQLANV------KDHELIEAK------SRLEGAAPELVKKQKVKVKNTAPKQQLRP--GD 645
Query: 803 LVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V V +FG+KG ++K + S E VQ+G +K +K +D+
Sbjct: 646 EVKVLTFGQKGQLLK-KVSDSEWNVQIGILKMKVKESDM 683
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 143/302 (47%), Gaps = 19/302 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA---IEMQKH 109
+LRVLE+DK+ + +SLGR+ + S + +++ + + D T+ A I ++ H
Sbjct: 5 TLRVLEYDKVKEQLLEHTASSLGRDKVKRLMPSTD--FEEIVEMQDTTDEAAKVIRLKGH 62
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
L G+ ++S ++ + S L P+E L + + + S ++ + + A L
Sbjct: 63 AP----LGGI--FDIRSNVKRAKIGSMLSPHELLDIASTMYGSRQMKRFIEDIVDNGAQL 116
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + +
Sbjct: 117 PI----LETHVAQIVSLYDLEKKITGCIGDGGEVLDSASDKLRGIRNQIRTAESRIREKL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVP 285
+ + R+ N + + + V+ + R I + G ++ S+SG IEP V
Sbjct: 173 ENMTRSSNAQKMLSDAIVTIRNDRYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVE 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ LQ+AR + E +L+ LTE++ + D + + I LD + A+A Y+ T
Sbjct: 233 LNNALQEARVKEKQEVERILMMLTEEVAAEADIVLANVEVIANLDFIFAKALYAKRMKAT 292
Query: 346 SP 347
P
Sbjct: 293 KP 294
>gi|184155003|ref|YP_001843343.1| DNA mismatch repair protein MutS2 [Lactobacillus fermentum IFO
3956]
gi|227514541|ref|ZP_03944590.1| MutS family DNA mismatch repair protein [Lactobacillus fermentum
ATCC 14931]
gi|260663398|ref|ZP_05864289.1| DNA mismatch repair protein MutS2 [Lactobacillus fermentum
28-3-CHN]
gi|183226347|dbj|BAG26863.1| DNA mismatch repair protein MutS2 [Lactobacillus fermentum IFO
3956]
gi|227087098|gb|EEI22410.1| MutS family DNA mismatch repair protein [Lactobacillus fermentum
ATCC 14931]
gi|260552250|gb|EEX25302.1| DNA mismatch repair protein MutS2 [Lactobacillus fermentum
28-3-CHN]
Length = 791
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 145/414 (35%), Positives = 223/414 (53%), Gaps = 65/414 (15%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V DI + + + +VITGPNTGGKTI LKT+GL +MA+SG+ I ++E + V FD+VFA
Sbjct: 317 VANDIALGKDYQAIVITGPNTGGKTITLKTLGLIQLMAQSGMFIPANENSTVAIFDNVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQSL Q+LSTFSGH++ + I+ Q T+ SLVLLDE+GAGT+P EG AL M++L+
Sbjct: 377 DIGDEQSLEQNLSTFSGHMENVKRILEQITANSLVLLDELGAGTDPKEGAALAMAILDQI 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+GS + + TTH+ ELK Y NA MEFD+ L+PTY++L GVPG+S+ I IA+
Sbjct: 437 GATGSEVVV-TTHYPELKVYGYDRAKTINASMEFDQQTLQPTYRLLLGVPGQSNGIAIAK 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLG+ V+ A L S ++N++I +L+
Sbjct: 496 RLGIEQAVIDEASSLVSDDSQDLNKMI----------------------------GDLVE 527
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSL---VHKSAQQLCPSASQARSLVHKRAQQLR 741
R++ E ++R + + + + AA L + + +Q +ARS + Q +
Sbjct: 528 QRKRAREE--NERLQAL--VKENAATKEELDAKLDRFNEQRDKLLERARSEANHEVSQAK 583
Query: 742 PSASQSLHCTKVGKNQHVLTSNFQQTTVDKVE--------------HPATASSSVVKDIK 787
A+Q +H H+ Q TV + E +P +SV++ K
Sbjct: 584 KKANQIIH--------HLRQLEIQGATVKENELIDAQGALNALHKDNPRLNHNSVLQRAK 635
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
Q ++K VGD V+V S+G++G ++ + + VQ+G +K + D+
Sbjct: 636 QKHQLK------VGDHVNVKSYGQQGVLLN-KRGAHKWEVQLGILKMAIDEADL 682
>gi|440781736|ref|ZP_20959964.1| recombination and DNA strand exchange inhibitor protein
[Clostridium pasteurianum DSM 525]
gi|440220454|gb|ELP59661.1| recombination and DNA strand exchange inhibitor protein
[Clostridium pasteurianum DSM 525]
Length = 788
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 213/397 (53%), Gaps = 30/397 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
V +D+++ R LV+TGPNTGGKT+ LKTVGL +MA SG+ I + E + V +F VFA
Sbjct: 315 VAMDVYLGRDFTSLVVTGPNTGGKTVTLKTVGLLELMAMSGILIPARENSTVSFFKEVFA 374
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I NI+ ++ S SLVL DE+GAGT+P EG AL +++LE
Sbjct: 375 DIGDEQSIEQSLSTFSSHMTNIVNIMGKADSNSLVLFDELGAGTDPTEGAALAVAILENL 434
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
E + L ATTH+ ELK + ENA +EFD LKPTY++L G+PG+S+A I++
Sbjct: 435 RERNTKLA-ATTHYSELKAYALKTEGVENASVEFDVETLKPTYRLLIGIPGKSNAFEISK 493
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGLP ++ AR+ + + + ++I + + + ++ AR ML +N + +
Sbjct: 494 RLGLPDYIIDEARKGISSDTLKFEDLI---QTLQEKSIKAEENARRSEML-KNEAEKIKE 549
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ L S R + + + + A+ + A + + K ++L
Sbjct: 550 KYEEKLYSLNSSREKALNE-----------GRREAKNIIAEAKEEADRILKNIRELERMG 598
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
S K+ + + L N + E A +S K + RVK G+ V
Sbjct: 599 YSSGTRAKLEEERKKLKENLENA-----EESALKNSQNHKGLN---RVKE------GEEV 644
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
++ S KG V+ SK E+ +Q G MK +K D+
Sbjct: 645 YIPSLNMKGIVLSQPDSKGEVQIQAGIMKINVKLKDL 681
Score = 44.7 bits (104), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 140/307 (45%), Gaps = 28/307 (9%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM-QKHGS 111
+LRVLE+ K+ + + + +TS ++ + L + ++ L+ET A+++ K GS
Sbjct: 5 ALRVLEYYKIKNEIKKYTQTSAAKD-IIDNLKPYDNIFEMK-EHLEETEEALKLLAKKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR----AAIKEDA 167
+ D + AI + S L P V LL+ S + + R + E+
Sbjct: 63 APFE-GAYD---ARDAISRAGKGSTLMP------VQLLKISNIQKCARRFKEYISHNEEE 112
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
+ + + + I+ L R+L SI + + I D AS L R ++ +
Sbjct: 113 ESFRVIEDICEGIVPL---RTLENSIFNAIIGEEEISDRASTVLFNIRRSLRDKTASVKN 169
Query: 228 LMDMLIRNENNESLFLE--VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLS 282
++ L+R+ +N FL+ + +I G R I A+ + GL+ SSSG IEP+
Sbjct: 170 KVNSLVRSYSN---FLQENIYTIRGDRYVIPVKAEYKAQVPGLVHDQSSSGATLFIEPIG 226
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
V LN+E+++ +L L++K+ ++ +E + + +LD + A+A Y+
Sbjct: 227 LVNLNNEIKEIMLKEQAEISRILEELSQKVYENIVLVENNASIVYELDFIFAKAKYASRI 286
Query: 343 GGTSPNI 349
+P +
Sbjct: 287 NAINPAV 293
>gi|323702088|ref|ZP_08113756.1| MutS2 family protein [Desulfotomaculum nigrificans DSM 574]
gi|333923406|ref|YP_004496986.1| MutS2 protein [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323532970|gb|EGB22841.1| MutS2 family protein [Desulfotomaculum nigrificans DSM 574]
gi|333748967|gb|AEF94074.1| MutS2 protein [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 783
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/265 (45%), Positives = 161/265 (60%), Gaps = 16/265 (6%)
Query: 443 HP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKV 496
HP VP I + + R LVITGPNTGGKT+ LKTVGL +M +SGLHI + +++
Sbjct: 305 HPLLGEDAVPATISLGKDFRTLVITGPNTGGKTVTLKTVGLFTLMTQSGLHIPAEAGSEM 364
Query: 497 PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556
F+ VFADIGDEQS+ QSLSTFS H+ I NI++++ + SLVLLDE+GAGT+P EG AL
Sbjct: 365 GIFNQVFADIGDEQSIEQSLSTFSSHMTNIVNILNRADTGSLVLLDELGAGTDPTEGAAL 424
Query: 557 GMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGR 616
++LE G+ TIATTH+ ELK Y+ ENA +EFD L+PTY++L G PGR
Sbjct: 425 ARAILEELHGRGA-CTIATTHYSELKNYAYTTPGVENASVEFDVETLRPTYRLLIGRPGR 483
Query: 617 SSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLS- 675
S+A I+ RLGL +VQ ARQ ++ ++I ++E+ + Q E E L
Sbjct: 484 SNAFEISARLGLQPAIVQRARQFLTTEQVQVADLINKLEQTQ-QAAERDREEAAILRRES 542
Query: 676 -------RNLHKNLLRTRRKILEHC 693
R L + L R ILE
Sbjct: 543 EEIKERYRQLEEQLREKREAILEKA 567
Score = 58.5 bits (140), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 104/212 (49%), Gaps = 5/212 (2%)
Query: 143 LAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGS 202
L+ LL ETL S R K A+ R+ L ++ L + L K+I++ + G
Sbjct: 83 LSAEELLAVGETLAASRRIK-KFFAEKSSRYPLLNELAEALTIQAQLEKNILRAILPGGE 141
Query: 203 IKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQ 260
I D ASP L Q R + + ++ + M+ +IR+ N+ + ++ + R + +
Sbjct: 142 IADDASPELLQIRRGLARAQNRVRERMESIIRSSENQKYLQDPIITIRNDRYVVPVKQEY 201
Query: 261 LS-FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDE 318
+ G++ S+SG IEP++AV N+E+++ + + + +L+ L+ + ++
Sbjct: 202 RNQIPGIVHDQSASGATLFIEPMAAVEANNEVRRLMVAEQQEIQKILVELSNGVSAIAED 261
Query: 319 IEKMLNGIIQLDVVNARATYSLSFGGTSPNIF 350
+ ++ + QLD + A+A YS + SP I
Sbjct: 262 LTITMDALGQLDFIMAKARYSRTLNALSPTII 293
>gi|229169279|ref|ZP_04296990.1| hypothetical protein bcere0007_42300 [Bacillus cereus AH621]
gi|228614174|gb|EEK71288.1| hypothetical protein bcere0007_42300 [Bacillus cereus AH621]
Length = 786
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 144/402 (35%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ Q+LSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQNLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + EA S LH+ L
Sbjct: 497 RLGLSDRVIDRARNHISTDTNKIENMIAKLEESQKNAESERKEAEEHRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E ++ K QK + +++ + +A ++H+ +QLR
Sbjct: 555 -QRQIIEFNDERDEKLLKAQK-------------EGEEKIEAAKKEAEGIIHE-LRQLRK 599
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
+ L + ++ A+ +VK KQ VK T +
Sbjct: 600 AQ---------------LVNVKDHELIEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG ++K + S E VQ+G +K +K +D+
Sbjct: 643 SGDEVKVLTFGQKGQLLK-KVSDTEWSVQIGILKMKVKESDM 683
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 146/302 (48%), Gaps = 19/302 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA---IEMQKH 109
+LRVLE++K+ + +SLGR+ + S + +++ + L + T+ A I ++ H
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVELQETTDEAAKVIRLKGH 62
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ L G+ S ++S I+ + S L P+E + + + + S ++ + I +L
Sbjct: 63 ----VPLGGI--SDIRSNIKRAKIGSMLSPHELIEIASTMYGSRQMKRFIDDMIDNGVEL 116
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + +
Sbjct: 117 PI----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRNQIRTAESRIREKL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVP 285
+ + R+ N + + + V+ + R I + G ++ S+SG IEP V
Sbjct: 173 ENMTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVE 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ LQ+AR + E +L+ LTE++ V+ D + + + LD + A+A Y+ T
Sbjct: 233 LNNALQEARVKEKQEVERILMMLTEEVAVEADIVLSNVEVVANLDFIFAKALYAKRIKAT 292
Query: 346 SP 347
P
Sbjct: 293 KP 294
>gi|169334053|ref|ZP_02861246.1| hypothetical protein ANASTE_00446 [Anaerofustis stercorihominis DSM
17244]
gi|169258770|gb|EDS72736.1| recombination and DNA strand exchange inhibitor protein
[Anaerofustis stercorihominis DSM 17244]
Length = 796
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 173/667 (25%), Positives = 320/667 (47%), Gaps = 92/667 (13%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTY--QDSLRLLDETNAAIEMQKH 109
++L+ LE+DK+ +S +A + +E +T L + Y +D L LDE + +
Sbjct: 4 KTLKALEFDKIISKISEYAFSDEAKEE-ITDLRPTDNVYLIKDKLNELDE------LIRF 56
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
S D+ + K I + L + + + ++ + ++ + + I D D
Sbjct: 57 SSSYADIPIYGYKINKDIISRATKDGLLINEDFINIAKSIKCAVMVKKHILSNI-SDEDN 115
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ + I L L K I +V+ + +I D AS L R ++ K+ + +
Sbjct: 116 FDILLDYADNIEDLSF---LQKEIDRVIIDSEAISDKASSTLYDIRRNIKNTNNKIREKL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLSSS-SGIGSVIEPLSAVP 285
+ +I ++ + E V+ + R + ++ + KG++ +S SG IEP + V
Sbjct: 173 NSIINSKTYQKYLSENIVTIRYSRYVVPVKSEYRGEVKGIVHDTSQSGATLFIEPEAIVN 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN++L++ K E +L L+ K++ + + N ++ LDV+NA++ +S+
Sbjct: 233 LNNKLKELEVEEQKEIEVILRILSNKIKENASNLNVNENILLYLDVLNAKSRFSI----- 287
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
++ H+P K+SS E I L A HPL
Sbjct: 288 -----------KNDYHKP---KISSDEE---IVLKSARHPL------------------- 311
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
+E+ VP +I + + R L+ITGPNT
Sbjct: 312 ---------------------------------IEMNKAVPSNIILDKDHRALIITGPNT 338
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKTVGL ++ +SGL I +++ +++P ++ +FADIGD QS++QSLSTFSGH+
Sbjct: 339 GGKTVTLKTVGLCSLLFQSGLFIPANDGSRLPIYEKIFADIGDNQSIAQSLSTFSGHMTN 398
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I +I++ + ++LVLLDE+ GT+P EG+++ +S+++ G+ + +TTH+ E+K
Sbjct: 399 IVDIVNSANDKTLVLLDELCVGTDPTEGSSIAISIIDNLKNIGARI-FSTTHYSEIKEYA 457
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
NA +EFD L PTY+++ G+PG+S+A I+++LGL ++++A++ +
Sbjct: 458 IVKKNVMNASVEFDVETLSPTYRLILGIPGKSNAFEISKKLGLKDSIIRDAKKYLTEDNR 517
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKIS 705
E+ ++I E+ + E + L ++ L++ L + I E+ + K
Sbjct: 518 EVEDLIKELNEKAVKVEEEKTQIDRLLRENKELNERLESEKAYIEENKSKIMMEASLKAK 577
Query: 706 DAAAIAR 712
D A A+
Sbjct: 578 DIIAAAK 584
>gi|293378174|ref|ZP_06624343.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium PC4.1]
gi|292643038|gb|EFF61179.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium PC4.1]
Length = 786
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFA
Sbjct: 317 VPNDIAIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I+S+ +SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNTVEILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+
Sbjct: 437 GKK-SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 496 RLGLDTDVINEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHHDL 553
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVKQFVVTAQGKEE-LAELVPVSEK-QTITEWLQETEDGLKVQRLRGGV 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELHRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKIIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|288574770|ref|ZP_06393127.1| MutS2 family protein [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570511|gb|EFC92068.1| MutS2 family protein [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 782
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 147/401 (36%), Positives = 219/401 (54%), Gaps = 39/401 (9%)
Query: 439 LELAHP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE 492
++ HP VPID+ RVLVITGPNTGGKT+ LKTVG++V +A GL I + E
Sbjct: 303 FQVRHPMLGSSAVPIDVHCGGAFRVLVITGPNTGGKTVVLKTVGVSVFLAWCGLPIPAVE 362
Query: 493 YAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLE 552
++V S+F+DIGDEQS+ QSLSTFS HLK I NI+ S +SL+LLDE+GAGT+P E
Sbjct: 363 GSQVGEVSSLFSDIGDEQSIEQSLSTFSAHLKNIVNILEDSDDRSLILLDELGAGTDPQE 422
Query: 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWG 612
G ALG++LL+ F GSL+ +ATTHH +K + D E A ++FD L PTY+++ G
Sbjct: 423 GAALGVALLKTFKRRGSLV-LATTHHNPIKKFATTTDGVETASVDFDLSTLTPTYRLIMG 481
Query: 613 VPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFL 672
+PG+S+A+ IAERLG+ V+ +A ++ + A I +I E+++ KT L+ +
Sbjct: 482 IPGQSNALAIAERLGMHREVLGDAEKVLKSGEASIETMIGELQK-KTLHLDSQAASLAKE 540
Query: 673 MLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSL 732
L K + R+ LE + K + ++ + L + QAR +
Sbjct: 541 RLEIEELKKAIEKERRDLERIKRRTIMKADR-------------EAERVLEEAERQAREM 587
Query: 733 VHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRV 792
+ + + +A + L+ K G + S +Q + K+IK+
Sbjct: 588 LRGLDEAAKSAADRELNKHKKGVKKSKERSQVRQAVFE------------AKEIKERG-A 634
Query: 793 KRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
K E VGD+V VS G G V+ ++ + VV VG +K
Sbjct: 635 KEIE---VGDVVQVSGSGSAGEVLSIKGKR--AVVLVGGLK 670
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSI-HGRL 252
+ V+DE G + D ASP L+ R ++ L R++ + + +I ++ L V S+ +GR
Sbjct: 136 LSVLDEKGELYDGASPRLRDLRERIDELRRRIRRDCNGIINGSSSHMLQERVLSMRNGRS 195
Query: 253 CIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALT 309
+ + + F G+L+ SSSG + +EP V LN+ + + R E + ALT
Sbjct: 196 VLLVRQEFVGRFPGILVDRSSSGNSAYMEPNCVVSLNNRMVELRQDERDEERRIFRALT 254
>gi|392531789|ref|ZP_10278926.1| recombination and DNA strand exchange inhibitor protein
[Carnobacterium maltaromaticum ATCC 35586]
Length = 788
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 153/422 (36%), Positives = 232/422 (54%), Gaps = 40/422 (9%)
Query: 429 LSPSEMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMM 481
L E V ++ HP V DI I + LVITGPNTGGKTI LKT+GL +M
Sbjct: 294 LVNEENDVRFIQARHPLIDEKQAVANDILIGGDYQALVITGPNTGGKTITLKTLGLLQLM 353
Query: 482 AKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLL 541
+SGL + +E +++ F VFADIGDEQS+ QSLSTFS H+ I +I+++ ++SL+L
Sbjct: 354 GQSGLQLPVAEGSQMGIFTEVFADIGDEQSIEQSLSTFSSHMTNIVSILNKIDNKSLILF 413
Query: 542 DEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 601
DE+GAGT+P EG AL +++L+ GS + +ATTH+ ELK Y+ NA MEFD
Sbjct: 414 DELGAGTDPQEGAALAIAILDQVGAVGSYV-MATTHYPELKAYGYNRPGTINASMEFDVE 472
Query: 602 KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEME-RFKTQ 660
L PTY++L GVPGRS+A I++RLGL V+ +AR L S +NE+I ++E R K
Sbjct: 473 TLSPTYRLLIGVPGRSNAFEISKRLGLDTAVIDSARSLIDGESQNLNEMIADLENRRKMT 532
Query: 661 FLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQ 720
+E+ HE R ++ + L+++L LE +R LV K+ +
Sbjct: 533 EMEY-HEVRQYVEEAETLYQDLTTA----LEQFFGER--------------EDLVKKARE 573
Query: 721 QLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASS 780
+ S+A K LR Q + G +H L ++ + + H T +
Sbjct: 574 KANQIVSEAEEEASKIVSDLRK--MQLTGQFEGGIKEHELID--AKSKLANLHHEETLTK 629
Query: 781 SVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVI-KVEPSKEEIVVQVGNMKWIMKFT 839
+ V ++ + + GD V V+S+G++GT++ KVE + +VQ+G +K +K +
Sbjct: 630 NKVLKKAKAKQQFKK-----GDEVIVASYGQRGTLMEKVEGNN--WLVQLGILKMKIKES 682
Query: 840 DI 841
D+
Sbjct: 683 DM 684
>gi|15895607|ref|NP_348956.1| recombination and DNA strand exchange inhibitor protein
[Clostridium acetobutylicum ATCC 824]
gi|337737556|ref|YP_004637003.1| recombination and DNA strand exchange inhibitor protein
[Clostridium acetobutylicum DSM 1731]
gi|38604976|sp|Q97GM6.1|MUTS2_CLOAB RecName: Full=MutS2 protein
gi|15025349|gb|AAK80296.1|AE007734_10 DNA mismatch repair protein mutS, YSHD B.subtilis ortholog
[Clostridium acetobutylicum ATCC 824]
gi|336292751|gb|AEI33885.1| recombination and DNA strand exchange inhibitor protein
[Clostridium acetobutylicum DSM 1731]
Length = 788
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 143/413 (34%), Positives = 224/413 (54%), Gaps = 55/413 (13%)
Query: 442 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS 501
A VP++I++ R+ LVITGPNTGGKT+ LKT GL +MA SGL I + E + + +F
Sbjct: 312 AKVVPLNIYMGREFTSLVITGPNTGGKTVTLKTTGLLEVMAMSGLMIPARENSTISFFKE 371
Query: 502 VFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 561
V+ADIGDEQS+ QSLSTFS H+ I II + SLVL DE+GAGT+P EG AL +S+L
Sbjct: 372 VYADIGDEQSIEQSLSTFSSHMTNIVRIIDDADEDSLVLFDELGAGTDPTEGAALAISIL 431
Query: 562 EAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAIN 621
EA + G+ + +ATTH+ ELK + ENA +EFD L+PTY++L G+PG+S+A
Sbjct: 432 EALRKRGTKI-VATTHYSELKAYALKTENVENASVEFDVETLRPTYRLLIGIPGKSNAFE 490
Query: 622 IAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFL--------M 673
I++RLGL +++ AR+ + E ++I ++ + E++ +A FL
Sbjct: 491 ISKRLGLSDYIIEEARKGISKDTLEFEDLIQNLQTRSVKAEENLRKA-EFLKEQAEKFKE 549
Query: 674 LSRNLHKNLLRTRRKILEHCASQRFRKV--QKISDAAAIARSLVHKSAQQLCPSASQARS 731
++ TR K L H + +K+ + S+A I + + + ++L S S+AR
Sbjct: 550 KYEEKVSSITETREKAL-HEGRREAKKIIEEAKSEADKILKDM--REMERLGYS-SEARQ 605
Query: 732 LVHKRAQQLRP---SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
+ + Q+L+ +A +SL+ ++ + + +K +K+
Sbjct: 606 RLQESRQKLKEKLNNAEESLNISERDQGE------------------------ALKSVKE 641
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
G+ V + S KG VI + SK E+ +Q G MK +K D+
Sbjct: 642 ------------GEEVFIPSLNMKGIVISTQDSKGEVGIQAGIMKINVKLKDL 682
Score = 43.5 bits (101), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 143/308 (46%), Gaps = 30/308 (9%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM-QKHGS 111
SLRVLE+ K+ + + TS ++ + +L Y+ ++ET A E+ K G+
Sbjct: 5 SLRVLEYFKIKDGIKKYISTSAAKK-LIDELEPYGSLYEVK-EHIEETKEAFELLMKKGA 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ D V A+ + L P + L V ++L+ + + + + KE+ + Y
Sbjct: 63 PPFE-GAYD---VTEAVSMAEKGFSLAPGQLLKVGSMLRCARKFKEYI--SHKEEEESYR 116
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ I+ L +++ +I + + I D AS AL R ++ + ++
Sbjct: 117 IIEDICSGIIPL---KNIEDNIFNAIIGEEEISDKASTALYSIRRSLKDKNASIKDKVNA 173
Query: 232 LIRNENN---ESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
++R+ + E+L+ +I G R I A+ + GL+ SS+G IEP+ V
Sbjct: 174 MMRSYSKYLQENLY----TIRGERYVIPVKAEYKAQVPGLVHDQSSTGATLFIEPMGLVN 229
Query: 286 LNDELQQARASVTKAEEDVLL----ALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
LN+E+++ KAE + +L AL K V + EK+ + +LD + A+A Y+ S
Sbjct: 230 LNNEIKELMLK-EKAEIERILRELSALIYKSIVAVKNNEKI---VTELDFIFAKAKYASS 285
Query: 342 FGGTSPNI 349
T+P++
Sbjct: 286 INATAPHV 293
>gi|418966331|ref|ZP_13518074.1| MutS2 family protein [Streptococcus constellatus subsp.
constellatus SK53]
gi|383340349|gb|EID18656.1| MutS2 family protein [Streptococcus constellatus subsp.
constellatus SK53]
Length = 776
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 148/386 (38%), Positives = 212/386 (54%), Gaps = 40/386 (10%)
Query: 436 VSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS 490
+ L + HP V D++ A +VITGPNTGGKTI LKT+GLA +MA+SGL IL+
Sbjct: 297 IRLLHVTHPLIENAVANDLYFASDLTEIVITGPNTGGKTIMLKTLGLAQLMAQSGLPILA 356
Query: 491 SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 550
++V FD +FADIGDEQS+ QSLSTFS H+ I I+ QS SLVLLDE+GAGT+P
Sbjct: 357 DNGSRVGIFDQIFADIGDEQSIEQSLSTFSSHMTNIVAILEQSDENSLVLLDELGAGTDP 416
Query: 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKIL 610
EG AL M++LE + T+ATTH+ ELK +NA MEFD L+PTY+ +
Sbjct: 417 QEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIEMAGVQNASMEFDTASLRPTYRFM 475
Query: 611 WGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH 670
GVPG S+A IA RLGL VV++A++L S ++N +I ER + Q L E+R
Sbjct: 476 QGVPGCSNAFEIARRLGLSDRVVKDAQELTDTDS-DVNRII---ERLEEQTL----ESRK 527
Query: 671 FLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQAR 730
L R + + L+ R + + K +++ A A+ +V L S S+
Sbjct: 528 RLDNIREVEQENLKFNRALKKLYNEFNREKETELNKARLEAQEIV-----DLALSESE-- 580
Query: 731 SLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP 790
S ++LH K ++ + Q + P T S K +KQ+
Sbjct: 581 ------------SILKNLHDKSSLKPHEIIEAKSQLKKL----APETVDLSQNKVLKQAK 624
Query: 791 RVKRTELPNVGDLVHVSSFGKKGTVI 816
+ ++ P VGD + V S+G++GT++
Sbjct: 625 KARK---PKVGDDILVISYGQRGTLV 647
>gi|297617881|ref|YP_003703040.1| MutS2 family protein [Syntrophothermus lipocalidus DSM 12680]
gi|297145718|gb|ADI02475.1| MutS2 family protein [Syntrophothermus lipocalidus DSM 12680]
Length = 779
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/207 (49%), Positives = 145/207 (70%), Gaps = 1/207 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+D+ + + +LVITGPNTGGKT+ LKTVGL +MA SGL + ++E ++ D+V+A
Sbjct: 312 VPVDLELGKGFDILVITGPNTGGKTVTLKTVGLLTLMAMSGLFVPAAEGTEIALVDAVYA 371
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++TSQSLVLLDE+GAGT+P+EG ALG ++L
Sbjct: 372 DIGDEQSIEQSLSTFSSHMTNIIDILKRATSQSLVLLDELGAGTDPVEGAALGRAILGEL 431
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G + + TTH ELK + ENAC+EFD + L+PTY++ G+PG S+A+ IAE
Sbjct: 432 LAKG-VKAVVTTHQSELKVFAFQEAKVENACVEFDPITLQPTYRLSIGIPGHSNALEIAE 490
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVI 651
RLGL +V+ ARQ + ++ +I
Sbjct: 491 RLGLDHRIVEKARQFVPQSEQDLGRII 517
Score = 79.3 bits (194), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 146/302 (48%), Gaps = 20/302 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
+L LE+DK+ +S A + +G E L +L + S+R ET A+++ +
Sbjct: 5 ALHRLEFDKILEMLSQKACSPMGAEKAL-ELQPVYDLETASMRQ-QETGEALKVLRLRDT 62
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
LTGV ++ +R VR PL E L V AL++ S + + R
Sbjct: 63 GF-LTGV--KDIRQHMRRVRSGVPLSTGELLDVGALVRASRLARDMVEG----------R 109
Query: 173 FMP-LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
P L + LFV+ + ++I + +DE G ++D+ASP LK R ++ + ++ + +
Sbjct: 110 ECPGLCGLTGDLFVDEGIERAIRESIDEGGEVRDTASPELKAIRNRIATAKNRVREYLQE 169
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLN 287
+R+ + + + ++ GR + A+ S KG++ S+SG +EP + V +N
Sbjct: 170 FVRSSHYQKFLQDAIITERQGRYVVPVKAEYRSEVKGIIHDESASGATVFVEPEAVVHVN 229
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+++++ + + E +L LT ++ + E+E+ L + LD+V A+ +L +P
Sbjct: 230 NDIRRLEMAENREIEKILRRLTSLLEPVVSELERDLEILTDLDLVLAKGRLALEMNAVAP 289
Query: 348 NI 349
+
Sbjct: 290 RL 291
>gi|239629718|ref|ZP_04672749.1| MutS family ATPase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|301065846|ref|YP_003787869.1| mutS family ATPase [Lactobacillus casei str. Zhang]
gi|417980047|ref|ZP_12620732.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
12A]
gi|418004482|ref|ZP_12644505.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
UW1]
gi|239528404|gb|EEQ67405.1| MutS family ATPase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|300438253|gb|ADK18019.1| MutS family ATPase [Lactobacillus casei str. Zhang]
gi|410525947|gb|EKQ00841.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
12A]
gi|410549791|gb|EKQ23945.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
UW1]
Length = 786
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 225/396 (56%), Gaps = 49/396 (12%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI + K + +VITGPNTGGKTI LKT+GL +M +SGL I + + +++ FD VFADIG
Sbjct: 319 DIPLGDKYQAMVITGPNTGGKTITLKTLGLLQLMGQSGLFIPADDESRIGIFDEVFADIG 378
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ Q+LSTFS H+ I +I+ Q + SLVL DE+GAGT+P EG AL +++L+A E
Sbjct: 379 DEQSIEQNLSTFSAHMDNIVHILKQLSQNSLVLFDELGAGTDPQEGAALAIAILDAVGEV 438
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L+PTY++L GVPGRS+A +I+ RLG
Sbjct: 439 GAYV-VATTHYPELKLYGYNTAKTINASMEFDSKTLQPTYRLLVGVPGRSNAFDISARLG 497
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
LPG++V+ A+ + + S E+N +I ++E+ + AR L ++++H L +
Sbjct: 498 LPGVIVERAKSMISSDSHELNNMISDLEKQRKAAETAYEAARRQLADAQSVHDELAAAYK 557
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
K ++R ++Q+ D A SLV K A++ K +QLR
Sbjct: 558 KF----TTERDAQLQQAKDKA---NSLVDK-----------AQTKADKIIKQLR-----Q 594
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP---------RVKRTELP 798
+ T G TV E+ A+ + +K + Q R + +
Sbjct: 595 MQLTNPG-------------TVK--ENQLIAAKTALKQLHQDEPLQKNRILRREREKQAL 639
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+VGD V V+S+ + GT+++ + K+ VQ+G +K
Sbjct: 640 HVGDEVKVASYDQTGTLLE-QFDKKHWQVQLGILKM 674
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 127/304 (41%), Gaps = 27/304 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSL---RLLDETNAAIEMQKHG 110
L+ LE+DK+ ++ T+ GR QL Q D + + LDET G
Sbjct: 6 LKTLEYDKIQQALLGQVVTANGR-----QLVQAMQPLTDPVAVQQALDET-------ADG 53
Query: 111 SCSLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
+ +L L G L + A++ V + L E ++ +LQ + L D
Sbjct: 54 ASALRLKGGIPVPQLENIDPALKRVDIGAVLNGQELASISRVLQTVSAIDKFL-----TD 108
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
I F L + L V L + + VD DG++ D ASP L R Q++ +E ++
Sbjct: 109 LQDQIDFRQLYTLQESLTVLPQLSRRLKTAVDPDGTLTDEASPQLHGVREQIKSIEGEIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIH-GRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSA 283
M R ++ L + +I R I A+ + G ++ S G IEP +
Sbjct: 169 GKMTNYTRGAQSKYLSDPIVTIRDDRYVIPVKAEYRAKFGGVVHDQSATGQTLFIEPQAI 228
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+ L++A+ + +L L+ ++ +I+ + D +NA+A + +
Sbjct: 229 VALNNRLREAQLAEVAEINRILAELSNELAPYTGQIKANAAVLGHFDFINAKARLAKAEK 288
Query: 344 GTSP 347
T P
Sbjct: 289 ATEP 292
>gi|229087099|ref|ZP_04219249.1| hypothetical protein bcere0022_36710 [Bacillus cereus Rock3-44]
gi|228696167|gb|EEL49002.1| hypothetical protein bcere0022_36710 [Bacillus cereus Rock3-44]
Length = 786
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 143/399 (35%), Positives = 223/399 (55%), Gaps = 35/399 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNDIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVLDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 YNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDRARNHISTDTNKIENMIAKLEESQKNAEREWNEAEEHRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++H+ +QLR
Sbjct: 555 -QRQIIEFNDERDERLLKAQK-------------EGEEKVEAAKKEAEGIIHE-LRQLRK 599
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGD 802
+ ++ K+ ++ + + P VK +P+ + GD
Sbjct: 600 AQLANV------KDHELIEAKSRLEGA----APELVKKQKVKVKNTAPK----QQLRAGD 645
Query: 803 LVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V V +FG+KG ++K + S E VQ+G +K +K +D+
Sbjct: 646 EVKVLTFGQKGQLLK-KVSDNEWNVQIGILKMKVKESDM 683
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 145/302 (48%), Gaps = 19/302 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA---IEMQKH 109
+LRVLE++K+ + +SLGR+ + + S + +++ + + + T+ A I ++ H
Sbjct: 5 TLRVLEYNKVKEQLLEHVASSLGRDKVKSLMPSTD--FEEIVEMQETTDEAAKVIRLKGH 62
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ L G+ ++ ++ + S L P+E L + + + S ++ + + +L
Sbjct: 63 ----VPLGGI--FDIRPNVKRAKIGSMLSPHELLDIASTMYGSRQMKRFIEDMVDNGVEL 116
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + +
Sbjct: 117 PI----LETYVAQIVSLYDLEKKITSCIGDGGEVLDSASDKLRGIRNQIRTAESRIREKL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVP 285
+ + R+ N + + + V+ + R I + G ++ S+SG IEP V
Sbjct: 173 ENMTRSSNAQKMLSDAIVTIRNDRYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVE 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ LQ+AR + E +L+ LTE++ V+ D + + I LD + A+A Y+ T
Sbjct: 233 LNNALQEARVKEKQEVERILMMLTEEVAVEADIVLANVEVIANLDFIFAKALYAKRIKAT 292
Query: 346 SP 347
P
Sbjct: 293 KP 294
>gi|431757245|ref|ZP_19545876.1| MutS2 protein [Enterococcus faecium E3083]
gi|430619534|gb|ELB56361.1| MutS2 protein [Enterococcus faecium E3083]
Length = 786
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +++ F+ VFA
Sbjct: 317 VPNDIAIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVGEESQIGIFEEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+
Sbjct: 437 GKK-SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 496 RLGLDTDVINEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHHDL 553
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 136/302 (45%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVKQFVVTAQGKEE-LAELVPVSEK-QTITEWLQETEDGLKVQRLRGGV 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L+Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELVQVSRVLSTTSELHRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKIIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|319946241|ref|ZP_08020481.1| DNA mismatch repair protein MutS [Streptococcus australis ATCC
700641]
gi|417919657|ref|ZP_12563185.1| MutS2 family protein [Streptococcus australis ATCC 700641]
gi|319747623|gb|EFV99876.1| DNA mismatch repair protein MutS [Streptococcus australis ATCC
700641]
gi|342832285|gb|EGU66584.1| MutS2 family protein [Streptococcus australis ATCC 700641]
Length = 778
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 145/391 (37%), Positives = 213/391 (54%), Gaps = 46/391 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L++ HP VP DI + +VITGPNTGGKTI LKT+GLA +MA+SGL IL
Sbjct: 296 EIQLLQVRHPLIEKAVPNDIHFGKDLTEIVITGPNTGGKTIMLKTLGLAQLMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ +KV F +F+DIGDEQS+ QSLSTFS H+ I +I+ Q +SLVLLDE+GAGT+
Sbjct: 356 ADTGSKVAVFTQIFSDIGDEQSIEQSLSTFSSHMTNIVSILEQVDEESLVLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG +L +++LE G + T+ATTH+ ELK +NA MEFD L+PTY+
Sbjct: 416 PQEGASLAIAILEDLRLRG-IKTMATTHYPELKAYGIETLGVQNASMEFDTDSLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA RLGL ++V+ A+ + ++N +I E+ + Q L E+R
Sbjct: 475 MQGVPGRSNAFEIARRLGLSEVIVRQAQGMTN-QDRDVNRII---EKLEAQTL----ESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R++ + L+ R K+ +R ++ K K AQ++
Sbjct: 527 KRLDSIRDVEQENLKFNRVLKKLYNELTRERETELNK-----------ARKEAQEIV--- 572
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
L + Q+ Q LH K ++ + Q + P T S K +
Sbjct: 573 ----DLALAESDQI----LQGLHAKSQLKPHEIIEAKSQLKKLS----PETVDLSKNKVL 620
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
KQ+ K+ P VGD + V S+G++G++ K
Sbjct: 621 KQA---KKARAPKVGDEILVISYGQRGSLTK 648
>gi|270293330|ref|ZP_06199539.1| DNA mismatch repair protein MutS [Streptococcus sp. M143]
gi|270278179|gb|EFA24027.1| DNA mismatch repair protein MutS [Streptococcus sp. M143]
Length = 778
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 218/389 (56%), Gaps = 46/389 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP VP D+ ++ V+VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVRHPLVKNAVPNDVHFGKELTVIVITGPNTGGKTIMLKTLGLTQLMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIETAFVQNASMEFDTASLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E + E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSDVIVGDASQQVNQDN-DVNRIIEQLE-------DQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA L + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVELALSESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K + ++ +KV+ + + V+
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------AELKKLAPEKVD---LSKNKVL--- 620
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
Q + KRT P VGD + V S+G++GT+
Sbjct: 621 -QKAKKKRT--PKVGDDIVVLSYGQRGTL 646
>gi|257886737|ref|ZP_05666390.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,141,733]
gi|257822791|gb|EEV49723.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,141,733]
Length = 786
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +++ F+ VFA
Sbjct: 317 VPNDIAIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVGEESQIGIFEEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+
Sbjct: 437 GKK-SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 496 RLGLDTDVINEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHHDL 553
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVKQFVVTAQGKEE-LAELVPVSEK-QTITEWLQETEDGLKVQRLRGGV 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELHRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKIIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|418007380|ref|ZP_12647266.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
UW4]
gi|410549324|gb|EKQ23497.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
UW4]
Length = 786
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 225/396 (56%), Gaps = 49/396 (12%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI + K + +VITGPNTGGKTI LKT+GL +M +SGL I + + +++ FD VFADIG
Sbjct: 319 DIPLGDKYQAMVITGPNTGGKTITLKTLGLLQLMGQSGLFIPADDESRIGIFDEVFADIG 378
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ Q+LSTFS H+ I +I+ Q + SLVL DE+GAGT+P EG AL +++L+A E
Sbjct: 379 DEQSIEQNLSTFSAHMDNIVHILKQLSQNSLVLFDELGAGTDPQEGAALAIAILDAVGEV 438
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L+PTY++L GVPGRS+A +I+ RLG
Sbjct: 439 GAYV-VATTHYPELKLYGYNTAKTINASMEFDSKTLQPTYRLLVGVPGRSNAFDISARLG 497
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
LPG++V+ A+ + + S E+N +I ++E+ + AR L ++++H L +
Sbjct: 498 LPGVIVERAKSMISSDSHELNNMISDLEKQRKAAETAYEAARRQLADAQSVHDELAAAYK 557
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
K ++R ++Q+ D A SLV K A++ K +QLR
Sbjct: 558 KF----TTERDAQLQQAKDKA---NSLVDK-----------AQTKADKIIKQLR-----Q 594
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP---------RVKRTELP 798
+ T G TV E+ A+ + +K + Q R + +
Sbjct: 595 MQLTNPG-------------TVK--ENQLIAAKTALKQLHQDEPLQKNRILRREREKQAL 639
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+VGD V V+S+ + GT+++ + K+ VQ+G +K
Sbjct: 640 HVGDEVKVASYDQTGTLLE-QFDKKHWQVQLGILKM 674
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 106/251 (42%), Gaps = 27/251 (10%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL---LDETNAAIEMQKHG 110
L+ LE+DK+ ++ T+ GR QL Q D + + LDET G
Sbjct: 6 LKTLEYDKIQQALLGQVVTANGR-----QLVQAMQPLTDPVAVQQALDET-------ADG 53
Query: 111 SCSLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
+ +L L G L + A++ V + L E ++ +LQ + L D
Sbjct: 54 ASALRLKGGIPVPQLENIDPALKRVDIGAVLNGQELASISRVLQTVSAIDKFL-----TD 108
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
I F L + L V L + + VD DG++ D ASP L R Q++ +E ++
Sbjct: 109 LQDQIDFRQLYTLQESLTVLPQLSRRLKTAVDPDGTLTDEASPQLHGVREQIKSIEGEIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIH-GRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSA 283
M R ++ L + +I R I A+ + G ++ S G IEP +
Sbjct: 169 GKMTNYTRGAQSKYLSDPIVTIRDDRYVIPVKAEYRAKFGGVVHDQSATGQTLFIEPQAI 228
Query: 284 VPLNDELQQAR 294
V LN+ L++A+
Sbjct: 229 VALNNRLREAQ 239
>gi|423470753|ref|ZP_17447497.1| MutS2 protein [Bacillus cereus BAG6O-2]
gi|402434491|gb|EJV66529.1| MutS2 protein [Bacillus cereus BAG6O-2]
Length = 786
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 143/402 (35%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ Q+LSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQNLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + EA + S LH+ L
Sbjct: 497 RLGLSDRVIDRARNHISTDTNKIENMIAKLEESQKNAESERKEAEEYRKQSEKLHREL-- 554
Query: 685 TRRKILEHC--ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E ++ K QK + +++ + +A ++H+ +QLR
Sbjct: 555 -QRQIIEFNDERDEKLLKAQK-------------EGEEKVEAAKKEAEGIIHE-LRQLRK 599
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
+ L + ++ A+ +VK KQ VK T +
Sbjct: 600 AQ---------------LVNVKDHELIEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG ++K + S E VQ+G +K +K +++
Sbjct: 643 PGDEVKVLTFGQKGQLLK-KVSDTEWSVQIGILKMKVKESNM 683
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 146/302 (48%), Gaps = 19/302 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA---IEMQKH 109
+LRVLE++K+ + +SLGR+ + S N +++ + L + T+ A I ++ H
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTN--FEEIVELQETTDEAAKVIRLKGH 62
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ L G+ S ++S I+ + S L P+E + + + + S ++ + I +L
Sbjct: 63 ----VPLGGI--SDIRSNIKRAKIGSMLSPHELIEIASTMYGSRQMKRFIDDMIDNGVEL 116
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + +
Sbjct: 117 PI----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRNQIRTAESRIREKL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVP 285
+ + R+ N + + + V+ + R I + G ++ S+SG IEP V
Sbjct: 173 ENMTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVE 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ LQ+AR + E +L+ LTE++ V+ D + + + LD + A+A Y+ T
Sbjct: 233 LNNALQEARVKEKQEVERILMMLTEEVAVEADIVLSNVEVVANLDFIFAKALYAKRIKAT 292
Query: 346 SP 347
P
Sbjct: 293 KP 294
>gi|229163542|ref|ZP_04291492.1| hypothetical protein bcere0009_43080 [Bacillus cereus R309803]
gi|228619924|gb|EEK76800.1| hypothetical protein bcere0009_43080 [Bacillus cereus R309803]
Length = 786
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 147/402 (36%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCAS--QRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R KVQK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIVEFNEDRDERLLKVQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|414084421|ref|YP_006993129.1| mutS2 family protein [Carnobacterium maltaromaticum LMA28]
gi|412998005|emb|CCO11814.1| mutS2 family protein [Carnobacterium maltaromaticum LMA28]
Length = 788
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 153/422 (36%), Positives = 231/422 (54%), Gaps = 40/422 (9%)
Query: 429 LSPSEMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMM 481
L E V ++ HP V DI I + LVITGPNTGGKTI LKT+GL +M
Sbjct: 294 LVNEENDVRFIQARHPLIDEKQAVANDILIGGDYQALVITGPNTGGKTITLKTLGLLQLM 353
Query: 482 AKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLL 541
+SGL + +E +++ F VFADIGDEQS+ QSLSTFS H+ I +I+++ +SL+L
Sbjct: 354 GQSGLQLPVAEGSQMGIFTEVFADIGDEQSIEQSLSTFSSHMTNIVSILNKIDDKSLILF 413
Query: 542 DEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 601
DE+GAGT+P EG AL +++L+ GS + +ATTH+ ELK Y+ NA MEFD
Sbjct: 414 DELGAGTDPQEGAALAIAILDQVGAVGSYV-MATTHYPELKAYGYNRPGTINASMEFDVE 472
Query: 602 KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEME-RFKTQ 660
L PTY++L GVPGRS+A I++RLGL V+ +AR L S +NE+I ++E R K
Sbjct: 473 TLSPTYRLLIGVPGRSNAFEISKRLGLDTAVIDSARSLIDGESQNLNEMIADLENRRKMT 532
Query: 661 FLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQ 720
+E+ HE R ++ + L+++L LE +R LV K+ +
Sbjct: 533 EMEY-HEVRQYVEEAETLYQDLTTA----LEQFFGER--------------EDLVKKARE 573
Query: 721 QLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASS 780
+ S+A K LR Q + G +H L ++ + + H T +
Sbjct: 574 KANQIVSEAEEEASKIVSDLRK--MQLTGQFEGGIKEHELID--AKSKLANLHHEETLTK 629
Query: 781 SVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVI-KVEPSKEEIVVQVGNMKWIMKFT 839
+ V ++ + + GD V V+S+G++GT++ KVE + +VQ+G +K +K +
Sbjct: 630 NKVLKKAKAKQQFKK-----GDEVIVASYGQRGTLMEKVEGNN--WLVQLGILKMKIKES 682
Query: 840 DI 841
D+
Sbjct: 683 DM 684
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 144/314 (45%), Gaps = 28/314 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGR--------EATLTQLWSINQTYQDSLRLLDETNAAIE 105
++ LE+DK+ ++ ++ + LGR LT++ + +D +LL +
Sbjct: 6 MQTLEFDKIKKALIAYTASELGRVEVEELMPATDLTKVQQWQEETEDGAKLL-RLKGGMP 64
Query: 106 MQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKE 165
+ K + L +++ + + I + LR + +F + L
Sbjct: 65 IPKLQNIKPHLKRLEIGAMLNGIEIAQIGKVLR-----TTTEVTRFFDDL---------- 109
Query: 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
+++ + L +++ +L +L + I + +DEDG + D AS ALK R ++ E +
Sbjct: 110 -SEIGVELFRLYELVAKLVTLPTLNQMIREAIDEDGHVMDDASQALKGIRTGMKRSESNI 168
Query: 226 YQLMDMLIRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLS 282
+ +D LIR +N + L + ++ + R I A+ + F G++ SS+G IEP S
Sbjct: 169 REKLDSLIRGKNAQYLSDALVTMRNDRYVIPVKAEYRNHFGGVVHDQSSTGQTLFIEPQS 228
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
V LN++L+Q + + + +L L+ ++ EI + + +LD + A+A Y +
Sbjct: 229 VVDLNNKLRQLQIEERQEIDRILAELSNEIAPYGAEILNNMFLLGKLDFIGAKAAYGKNI 288
Query: 343 GGTSPNIFLPQDMK 356
T P + D++
Sbjct: 289 KATRPLVNEENDVR 302
>gi|257892933|ref|ZP_05672586.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,408]
gi|257829312|gb|EEV55919.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,408]
Length = 786
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +++ F+ VFA
Sbjct: 317 VPNDIAIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVGEESQIGIFEEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+
Sbjct: 437 GKK-SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 496 RLGLDTDVINEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHHDL 553
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVKQFVVTAQGKEE-LAELVPVSEK-QTITEWLQETEDGLKVQRLRGGV 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELHRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKIIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|423452167|ref|ZP_17429020.1| MutS2 protein [Bacillus cereus BAG5X1-1]
gi|401142238|gb|EJQ49787.1| MutS2 protein [Bacillus cereus BAG5X1-1]
Length = 786
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 143/402 (35%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ Q+LSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQNLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + EA + S LH+ L
Sbjct: 497 RLGLSDRVIDRARNHISTDTNKIENMIAKLEESQKNAESERKEAEEYRKQSEKLHREL-- 554
Query: 685 TRRKILEHC--ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E ++ K QK + +++ + +A ++H+ +QLR
Sbjct: 555 -QRQIIEFNDERDEKLLKAQK-------------EGEEKVEAAKKEAEGIIHE-LRQLRK 599
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
+ L + ++ A+ +VK KQ VK T +
Sbjct: 600 AQ---------------LVNVKDHELIEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG ++K + S E VQ+G +K +K +++
Sbjct: 643 PGDEVKVLTFGQKGQLLK-KVSDTEWSVQIGILKMKVKESNM 683
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 146/302 (48%), Gaps = 19/302 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA---IEMQKH 109
+LRVLE++K+ + +SLGR+ + S + +++ + L + T+ A I ++ H
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVELQETTDEAAKVIRLKGH 62
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ L G+ S ++S I+ + S L P+E + + + + S ++ + I +L
Sbjct: 63 ----VPLGGI--SDIRSNIKRAKIGSMLSPHELIEIASTMYGSRQMKRFIDDMIDNGVEL 116
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + +
Sbjct: 117 PI----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRNQIRTAESRIREKL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVP 285
+ + R+ N + + + V+ + R I + G ++ S+SG IEP V
Sbjct: 173 ENMTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVE 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ LQ+AR + E +L+ LTE++ V+ D + + + LD + A+A Y+ T
Sbjct: 233 LNNALQEARVKEKQEVERILMMLTEEVAVEADIVLSNVEVVANLDFIFAKALYAKRIKAT 292
Query: 346 SP 347
P
Sbjct: 293 KP 294
>gi|227552101|ref|ZP_03982150.1| MutS family DNA mismatch repair protein [Enterococcus faecium
TX1330]
gi|424762404|ref|ZP_18189913.1| MutS2 family protein [Enterococcus faecalis TX1337RF]
gi|431033419|ref|ZP_19491265.1| MutS2 protein [Enterococcus faecium E1590]
gi|227178767|gb|EEI59739.1| MutS family DNA mismatch repair protein [Enterococcus faecium
TX1330]
gi|402424629|gb|EJV56797.1| MutS2 family protein [Enterococcus faecium TX1337RF]
gi|430564520|gb|ELB03704.1| MutS2 protein [Enterococcus faecium E1590]
Length = 786
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +++ F+ VFA
Sbjct: 317 VPNDIAIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVGEESQIGIFEEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+
Sbjct: 437 GKK-SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 496 RLGLDTDVINEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHHDL 553
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVKQFVVTAQGKEE-LAELVPVSEK-QTITEWLQETEDGLKVQRLRGGV 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELHRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKIIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|431762509|ref|ZP_19551071.1| MutS2 protein [Enterococcus faecium E3548]
gi|430625201|gb|ELB61851.1| MutS2 protein [Enterococcus faecium E3548]
Length = 786
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +++ F+ VFA
Sbjct: 317 VPNDIAIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVGEESQIGIFEEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+
Sbjct: 437 GKK-SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 496 RLGLDTDVINEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHHDL 553
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ + L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVKQFVVTAQGKEE-LAELVPVSEK-KTITEWLQETEDGLKVQRLRGGV 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELHRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKIIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|357236448|ref|ZP_09123791.1| putative MutS2 protein [Streptococcus criceti HS-6]
gi|356884430|gb|EHI74630.1| putative MutS2 protein [Streptococcus criceti HS-6]
Length = 780
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 150/400 (37%), Positives = 228/400 (57%), Gaps = 40/400 (10%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ ++ V+VITGPNTGGKTI LKT+GL+ +MA+SGL IL+ +KV F
Sbjct: 307 LVNPVANDLHFSKNLSVIVITGPNTGGKTIMLKTLGLSQIMAQSGLPILADSGSKVAIFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I +I+ ++ QSLVLLDE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMGHIVDILDRADDQSLVLLDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK +NA M FD L+PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMATTHYPELKAYGIETAHVQNASMAFDIDSLRPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL ++V +A Q+ S + N +I E+ +TQ E+R L R++ +
Sbjct: 486 EIARRLGLAKVIVDDAEQMTNRES-DTNAII---EQLETQ----TAESRQRLDHIRDVEQ 537
Query: 681 NLLRTRR--KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
L+ R K L + S + K K+ A R LV ++ + ++Q ++ R+
Sbjct: 538 ENLKFNRAVKKLYNEFSHAYDK--KLEQAQDEIRQLVARATNE----SNQILKNLNDRS- 590
Query: 739 QLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP 798
QL+P H K + + + + +KV ++++ + + P
Sbjct: 591 QLKP------HEVIEAKGKLKKLAPSEDLSKNKV-------------LRKAKKQRAARAP 631
Query: 799 NVGDLVHVSSFGKKGTVI-KVEPSKEEIVVQVGNMKWIMK 837
VGD + V ++G++GT+I +++ + E QVG +K I+K
Sbjct: 632 KVGDDIIVIAYGQRGTLINQLKDGRWE--AQVGLIKMILK 669
Score = 42.7 bits (99), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 83/162 (51%), Gaps = 10/162 (6%)
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENN---ESLFLEVSSIHG 250
+Q +++ G I+D ASP+L + R ++ E ++ Q++ L++++++ E+L ++S +G
Sbjct: 134 LQSINDGGFIEDFASPSLSKIRCRIHQGESQVRQILQDLVKSKSDMLAENL---IASRNG 190
Query: 251 R--LCIRTGADQLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLA 307
R L +R G++ S+SG IEP + V LN+++ QARA +L
Sbjct: 191 RSVLPVRNTYRN-KIAGVVHDISASGTTVYIEPRAVVQLNEDITQARADERHELHRILRK 249
Query: 308 LTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
L++ ++ I I LD V A+ + + P++
Sbjct: 250 LSDLLRPHTQTIRNNAWLIGHLDFVRAKYLFMQEHQASLPSL 291
>gi|390630927|ref|ZP_10258899.1| MutS2 protein [Weissella confusa LBAE C39-2]
gi|390483815|emb|CCF31247.1| MutS2 protein [Weissella confusa LBAE C39-2]
Length = 791
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 154/243 (63%), Gaps = 9/243 (3%)
Query: 419 AARKGEKDTNLSPSEMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTIC 471
AA ++ SP E V L+ HP V DI I + +++TGPNTGGKTI
Sbjct: 286 AAATKSQEPEYSP-ENHVRLLQARHPLLDPQKAVANDIIIGEDYKAIIVTGPNTGGKTIT 344
Query: 472 LKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS 531
LKT+GL +MA+SGL I +EY+ V F VFADIGDEQS+ QSLSTFS H+ I I+
Sbjct: 345 LKTLGLLQLMAQSGLFIPVAEYSTVGLFKEVFADIGDEQSIEQSLSTFSSHMVNIVEILK 404
Query: 532 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591
Q + SLVL DE+GAGT+P EG AL MS+L+A GS T+ATTH+ ELK Y+
Sbjct: 405 QIDADSLVLFDELGAGTDPQEGAALAMSILDAVGAKGS-YTVATTHYPELKVYGYNRVDT 463
Query: 592 ENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI 651
NA MEFD L+PTYK L G+PGRS+A+ I++RLGL ++ A L S E+N++I
Sbjct: 464 INASMEFDVETLRPTYKFLLGIPGRSNALEISKRLGLDQSIIDAAASLTTEDSQELNDMI 523
Query: 652 IEM 654
++
Sbjct: 524 ADL 526
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 4/181 (2%)
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
+L V + L + + +D DG + D ASP L + R + E + Q M R ++ + L
Sbjct: 126 RLVVMQDLTRRVNTAIDGDGRVTDEASPELHRVRQAITSTENAIRQKMQDYTRGKSAQYL 185
Query: 242 FLEVSSI-HGRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLNDELQQARASVT 298
+ +I + R I + S G ++ S G IEP V +N+ L++
Sbjct: 186 SDPIVTIRNDRYVIPVKTEYRSHFGGVVHDQSQTGQTLYIEPGDVVDMNNRLREHYIKER 245
Query: 299 KAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRS 358
EE VL L+ ++ + D I+K + LD VNA+A Y+ + P + P++ R
Sbjct: 246 HEEERVLAELSAMLRPEADNIQKNAEVLGHLDFVNAKARYAAATKSQEPE-YSPENHVRL 304
Query: 359 L 359
L
Sbjct: 305 L 305
>gi|417988978|ref|ZP_12629502.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
A2-362]
gi|410540705|gb|EKQ15217.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
A2-362]
Length = 786
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 225/396 (56%), Gaps = 49/396 (12%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI + K + +VITGPNTGGKTI LKT+GL +M +SGL I + + +++ FD VFADIG
Sbjct: 319 DIPLGDKYQAMVITGPNTGGKTITLKTLGLLQLMGQSGLFIPADDESRIGIFDEVFADIG 378
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ Q+LSTFS H+ I +I+ Q + SLVL DE+GAGT+P EG AL +++L+A E
Sbjct: 379 DEQSIEQNLSTFSAHMDNIVHILKQLSQNSLVLFDELGAGTDPQEGAALAIAILDAVGEI 438
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L+PTY++L GVPGRS+A +I+ RLG
Sbjct: 439 GAYV-VATTHYPELKLYGYNTAKTINASMEFDSKTLQPTYRLLVGVPGRSNAFDISARLG 497
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
LPG++V+ A+ + + S E+N +I ++E+ + AR L ++++H L +
Sbjct: 498 LPGVIVERAKSMISSDSHELNNMISDLEKQRKAAETAYEAARRQLADAQSVHDELAAAYK 557
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
K ++R ++Q+ D A SLV K A++ K +QLR
Sbjct: 558 KF----TTERDAQLQQAKDKA---NSLVDK-----------AQTKADKIIKQLR-----Q 594
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP---------RVKRTELP 798
+ T G TV E+ A+ + +K + Q R + +
Sbjct: 595 MQLTNPG-------------TVK--ENQLIAAKTALKQLHQDEPLQKNRILRREREKQAL 639
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+VGD V V+S+ + GT+++ + K+ VQ+G +K
Sbjct: 640 HVGDEVKVASYDQTGTLLE-QFDKKHWQVQLGILKM 674
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 127/304 (41%), Gaps = 27/304 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSL---RLLDETNAAIEMQKHG 110
L+ LE+DK+ ++ T+ GR QL Q D + + LDET G
Sbjct: 6 LKTLEYDKIQQALLGQVVTANGR-----QLVQAMQPLTDPVAVQQALDET-------ADG 53
Query: 111 SCSLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
+ +L L G L + A++ V + L E ++ +LQ + L D
Sbjct: 54 ASALRLKGGIPVPQLENIDPALKRVDIGAVLNGQELASISRVLQTVSAIDKFL-----TD 108
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
I F L + L V L + + VD DG++ D ASP L R Q++ +E ++
Sbjct: 109 LQDQIDFRQLYTLQESLTVLPQLSRRLKTAVDPDGTLTDEASPQLHGVREQIKSIEGEIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIH-GRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSA 283
M R ++ L + +I R I A+ + G ++ S G IEP +
Sbjct: 169 GKMTNYTRGAQSKYLSDPIVTIRDDRYVIPVKAEYRAKFGGVVHDQSATGQTLFIEPQAI 228
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+ L++A+ + +L L+ ++ +I+ + D +NA+A + +
Sbjct: 229 VALNNRLREAQLAEVAEINRILAELSNELAPYTGQIKANAAVLGHFDFINAKARLAKAEK 288
Query: 344 GTSP 347
T P
Sbjct: 289 ATEP 292
>gi|312863354|ref|ZP_07723592.1| MutS2 family protein [Streptococcus vestibularis F0396]
gi|311100890|gb|EFQ59095.1| MutS2 family protein [Streptococcus vestibularis F0396]
Length = 782
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 153/404 (37%), Positives = 218/404 (53%), Gaps = 48/404 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ +VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + ++V F
Sbjct: 307 LVNPVANDLHFDEDLTAIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSRVAIFQ 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ + S SLVL+DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHIVEILDAADSNSLVLVDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-QIKTMATTHYPELKAYGIETQHVENASMEFDTATLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQ-FLEHVHEARHFLMLSRN 677
IA RLGL I+V+ A L S ++N +I +E + +TQ LEH+ + N
Sbjct: 486 EIARRLGLNEIIVKEAENLTDTDS-DVNRIIEQLEAQTVETQKRLEHIKDVEQ-----EN 539
Query: 678 LHKNLLRTRRKI---LEHCASQRFRKVQK-ISDAAAIARSLVHKSAQQLCPSASQARSLV 733
L N R +K+ H + K QK I D A L S S ++L
Sbjct: 540 LKFN--RAVKKLYNEFSHEYDKELEKAQKDIQDMVDTA----------LAESDSILKTL- 586
Query: 734 HKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVK 793
H ++ QL+P H K + + K+ S + V ++++ + K
Sbjct: 587 HDKS-QLKP------HEVIDAKGK-----------LKKLAPQVDLSKNKV--LRKAKKEK 626
Query: 794 RTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
T P VGD + V+++G++GT+ + QVG +K +K
Sbjct: 627 TTRAPRVGDDIIVTAYGQRGTLTS-QAKNGNWEAQVGLIKMTLK 669
>gi|257895303|ref|ZP_05674956.1| DNA mismatch repair protein [Enterococcus faecium Com12]
gi|257831868|gb|EEV58289.1| DNA mismatch repair protein [Enterococcus faecium Com12]
Length = 576
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 155/238 (65%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I E +++ F+ VFA
Sbjct: 317 VPNDIAIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPVGEESQIGIFEEVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+
Sbjct: 437 GKK-SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 496 RLGLDTDVINEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHHDL 553
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVKQFVVTAQGKEE-LAELVPVSEK-QTITEWLQETEDGLKVQRLRGGV 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELHRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKIIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|374992901|ref|YP_004968400.1| MutS2 family protein [Desulfosporosinus orientis DSM 765]
gi|357211267|gb|AET65885.1| MutS2 family protein [Desulfosporosinus orientis DSM 765]
Length = 787
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 148/433 (34%), Positives = 221/433 (51%), Gaps = 55/433 (12%)
Query: 426 DTNLSPSEM----QVSALELAHP------VPIDIFIARKTRVLVITGPNTGGKTICLKTV 475
D N E+ Q+ ++ HP VP+ + + LVITGPNTGGKT+ LK V
Sbjct: 287 DMNAGSPELVTGQQLKLVQARHPLISGRVVPLSVELGIDFDTLVITGPNTGGKTVALKAV 346
Query: 476 GLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTS 535
GL M + GL I + +K+ F +FADIGDEQS+ QSLSTFSGH+K I +II+++
Sbjct: 347 GLMAAMNQCGLQIPAESESKMGVFTQLFADIGDEQSVEQSLSTFSGHMKNIVDIINRADE 406
Query: 536 QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENAC 595
+SLVLLDE+GAGT+P EG AL M +L E G TI+TTH+G LKT Y +NA
Sbjct: 407 RSLVLLDEVGAGTDPTEGAALAMGILAELHERGC-RTISTTHYGALKTFAYETPRVKNAS 465
Query: 596 MEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEME 655
+EFD L+PTY++L G+PG+S+A IA RLGL V+ A+ N + E E
Sbjct: 466 VEFDTETLRPTYRLLIGIPGKSNAFTIAGRLGLSEGVL-----------AKANTFVTERE 514
Query: 656 RFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLV 715
+E++ E R + + K T R+ +E + K ++ + I +L
Sbjct: 515 MQVADLIENLGETRREI----EIEKLKAETGRQAVEKQSKALEEKSNRLDEEVEILLALA 570
Query: 716 HKSAQQLCPSAS-QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEH 774
A +L A +A +L+ + L+ N QQ ++K
Sbjct: 571 RDEASELVREAKREAEALIEELKSALK-------------------KENKQQQDIEKARQ 611
Query: 775 PATASSSVVKDIKQSPRVKRT--ELPN----VGDLVHVSSFGKKGTVIKVEPSKEEIVVQ 828
+ + Q ++KRT EL +G V+++ +KG V+K+ + E+ VQ
Sbjct: 612 ---GFRKISAKLDQGRQIKRTGGELTADQIMLGQTVYMTKVKQKGQVVKLPNANGEVQVQ 668
Query: 829 VGNMKWIMKFTDI 841
G MK ++ T++
Sbjct: 669 AGIMKVMVPLTEL 681
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 122/273 (44%), Gaps = 25/273 (9%)
Query: 119 VDLSLVKSAIREVRRASPL-RPNEALAVVALLQFSETLQLSLRAAIKEDADLY-----IR 172
VD+ V+ A+++ A L R N +V + L+ LR + +L +R
Sbjct: 40 VDIEFVRMALQKTEEAKNLMRGNPLFSVRGAKEIRAYLERCLRGGVVHGEELLEIRDTLR 99
Query: 173 FMPLTQMIMQLF---------------VNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQ 217
T+ +Q F +SL I + + EDG++ D+ASP L + R
Sbjct: 100 VGRKTKQYLQEFRESYSGLWDIVLPIESQKSLEDEISRCISEDGNVADNASPELAELRRS 159
Query: 218 VQMLERKLYQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSG 273
+ L+ ++ + ++ +RN + + + ++ R I + + SF G++ S+SG
Sbjct: 160 INRLQNRIRESLEGTLRNPVYQKMLQDPIITQRSDRYVIPIKQEYRGSFPGIVHDQSASG 219
Query: 274 IGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVN 333
IEP+ V L +EL++ + + +L L+ +++ DEI + + QLD+V
Sbjct: 220 ATLFIEPMPVVQLGNELREVILKEHREVQRILQMLSAQIEGRADEIADLHEALAQLDLVI 279
Query: 334 ARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTS 366
A+A SL SP + Q +K P+ S
Sbjct: 280 AKAHLSLDMNAGSPELVTGQQLKLVQARHPLIS 312
>gi|385817010|ref|YP_005853400.1| DNA mismatch repair protein MutS2 [Lactobacillus amylovorus
GRL1118]
gi|327182948|gb|AEA31395.1| DNA mismatch repair protein MutS2 [Lactobacillus amylovorus
GRL1118]
Length = 785
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 199/681 (29%), Positives = 321/681 (47%), Gaps = 118/681 (17%)
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
D I + ++ QL V L + + + +D DG + D+AS AL + R + E ++
Sbjct: 111 DEKIDLSAIDSILDQLDVPDLLFRELKKSLDYDGEVLDTASSALARLRHDIASNEEEIKD 170
Query: 228 LMDMLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAV 284
M+ + +++ L ++ +I R I + + F G++ S+SG IEP + +
Sbjct: 171 KMNAYTKGNSSKYLSEQIVTIRDDRYVIPVKQEYRTKFGGVVHDQSASGQTLFIEPEAVL 230
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+ Q A + ++L L+ + ++D + + + +LD + A+A
Sbjct: 231 NLNNRQQNLIAQEKQEIRNILKHLSGLAREEIDSLNNIATALTRLDFLQAKAK------- 283
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
L ++MK S EP+ +K + +I L A HPL+
Sbjct: 284 ------LAKNMKAS---EPILTK------DHSINLRNARHPLI----------------- 311
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
P ++ VP DI + ++ITGPN
Sbjct: 312 -------------------------DPEKV----------VPNDIRLGDDFDTMLITGPN 336
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKTI LKT GL +MA+SGL I + E +KV F+ V+ADIGDEQS+ QSLSTFS H+
Sbjct: 337 TGGKTITLKTAGLLQLMAQSGLFIPAEEGSKVGVFEEVYADIGDEQSIEQSLSTFSSHIN 396
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I I+ ++LVL+DEIGAGT+P EG +L +S+L+ + + + + TTH+ ELK
Sbjct: 397 DIVAIMKNVNKETLVLIDEIGAGTDPEEGASLAISILDFLRQKDAKIMV-TTHYPELKLY 455
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
Y+ NA MEFD L PTY + G+PG S+A IA RLG+ VV+NA+ L
Sbjct: 456 GYNRPRTTNASMEFDLKTLSPTYHLQIGIPGHSNAFAIARRLGMREDVVKNAQNLMSDED 515
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
++IN++I +++ + AR+ L S + + L + ++ L+ +QR +K
Sbjct: 516 SDINKMISKLD----AQTKAATSARNRLETSLDRSQKLEQKLQQALD-WYNQRVQK---- 566
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764
QL + +A ++ KR R A Q + + KN V +
Sbjct: 567 ----------------QLDFAQERANEIIAKR----RKKADQIIEQLEKQKNAGVKENKI 606
Query: 765 --QQTTVDKVEHPAT--ASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
+ ++ +E A A + V++ R KR +VGD V V S+G+ GT+ K +
Sbjct: 607 IEAKGELNNLERQANNLAHNKVLQ------REKRRHHVSVGDRVKVLSYGQTGTITK-KL 659
Query: 821 SKEEIVVQVGNMKWIMKFTDI 841
S+ E VQ+G +K DI
Sbjct: 660 SEHEYEVQMGIIKVKASDRDI 680
>gi|228923296|ref|ZP_04086584.1| hypothetical protein bthur0011_42750 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|423582763|ref|ZP_17558874.1| MutS2 protein [Bacillus cereus VD014]
gi|423634569|ref|ZP_17610222.1| MutS2 protein [Bacillus cereus VD156]
gi|228836250|gb|EEM81603.1| hypothetical protein bthur0011_42750 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|401211578|gb|EJR18325.1| MutS2 protein [Bacillus cereus VD014]
gi|401280548|gb|EJR86468.1| MutS2 protein [Bacillus cereus VD156]
Length = 786
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH++L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHRDL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEDRDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S +++ I++ AD +
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSR----NMKRFIEDMADNGV 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 115 ELPILETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|217962033|ref|YP_002340603.1| recombination and DNA strand exchange inhibitor protein [Bacillus
cereus AH187]
gi|222098016|ref|YP_002532073.1| recombination and DNA strand exchange inhibitor protein [Bacillus
cereus Q1]
gi|229141279|ref|ZP_04269817.1| hypothetical protein bcere0013_43720 [Bacillus cereus BDRD-ST26]
gi|375286547|ref|YP_005106986.1| MutS2 family protein [Bacillus cereus NC7401]
gi|423355034|ref|ZP_17332659.1| MutS2 protein [Bacillus cereus IS075]
gi|423570780|ref|ZP_17547025.1| MutS2 protein [Bacillus cereus MSX-A12]
gi|423603770|ref|ZP_17579663.1| MutS2 protein [Bacillus cereus VD102]
gi|226723047|sp|B7HRJ3.1|MUTS2_BACC7 RecName: Full=MutS2 protein
gi|254766387|sp|B9J054.1|MUTS2_BACCQ RecName: Full=MutS2 protein
gi|217064711|gb|ACJ78961.1| MutS2 family protein [Bacillus cereus AH187]
gi|221242074|gb|ACM14784.1| DNA mismatch repair protein, MutS family [Bacillus cereus Q1]
gi|228642060|gb|EEK98353.1| hypothetical protein bcere0013_43720 [Bacillus cereus BDRD-ST26]
gi|358355074|dbj|BAL20246.1| MutS2 family protein [Bacillus cereus NC7401]
gi|401085211|gb|EJP93454.1| MutS2 protein [Bacillus cereus IS075]
gi|401203407|gb|EJR10246.1| MutS2 protein [Bacillus cereus MSX-A12]
gi|401246534|gb|EJR52881.1| MutS2 protein [Bacillus cereus VD102]
Length = 786
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V++ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIEQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LATHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|322516027|ref|ZP_08068964.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124]
gi|322125442|gb|EFX96788.1| exopolyphosphatase [Streptococcus vestibularis ATCC 49124]
Length = 791
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 153/404 (37%), Positives = 218/404 (53%), Gaps = 48/404 (11%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ +VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + ++V F
Sbjct: 316 LVNPVANDLHFDEDLTAIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSRVAIFQ 375
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ + S SLVL+DE+GAGT+P EG +L M++
Sbjct: 376 EIFADIGDEQSIEQSLSTFSSHMTHIVEILDAADSNSLVLVDELGAGTDPQEGASLAMAI 435
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 436 LEHLRLS-QIKTMATTHYPELKAYGIETQHVENASMEFDTATLSPTYRFMQGVPGRSNAF 494
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQ-FLEHVHEARHFLMLSRN 677
IA RLGL I+V+ A L S ++N +I +E + +TQ LEH+ + N
Sbjct: 495 EIARRLGLNEIIVKEAENLTDTDS-DVNRIIEQLEAQTVETQKRLEHIKDVEQ-----EN 548
Query: 678 LHKNLLRTRRKI---LEHCASQRFRKVQK-ISDAAAIARSLVHKSAQQLCPSASQARSLV 733
L N R +K+ H + K QK I D A L S S ++L
Sbjct: 549 LKFN--RAVKKLYNEFSHEYDKELEKAQKDIQDMVDTA----------LAESDSILKTL- 595
Query: 734 HKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVK 793
H ++ QL+P H K + + K+ S + V ++++ + K
Sbjct: 596 HDKS-QLKP------HEVIDAKGK-----------LKKLAPQVDLSKNKV--LRKAKKEK 635
Query: 794 RTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
T P VGD + V+++G++GT+ + QVG +K +K
Sbjct: 636 TTRAPRVGDDIIVTAYGQRGTLTS-QAKNGNWEAQVGLIKMTLK 678
>gi|229093646|ref|ZP_04224746.1| hypothetical protein bcere0021_43700 [Bacillus cereus Rock3-42]
gi|228689733|gb|EEL43540.1| hypothetical protein bcere0021_43700 [Bacillus cereus Rock3-42]
Length = 786
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V++ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIEQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|423335900|ref|ZP_17313651.1| DNA mismatch repair protein [Lactobacillus reuteri ATCC 53608]
gi|337729103|emb|CCC04226.1| DNA mismatch repair protein [Lactobacillus reuteri ATCC 53608]
Length = 791
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 144/411 (35%), Positives = 219/411 (53%), Gaps = 50/411 (12%)
Query: 433 EMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG 485
E VS + HP V DI I + ++ITGPNTGGKTI LKT+G+ +M +SG
Sbjct: 298 ENHVSLRKARHPLIDPRRVVTNDIKIGEDYQAIIITGPNTGGKTITLKTLGIIQLMGQSG 357
Query: 486 LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIG 545
L I + E + + FD+VFADIGDEQSL Q+LSTFSGH+ + I+ Q TS+S+VLLDE+G
Sbjct: 358 LFIPAEEGSTIGIFDNVFADIGDEQSLEQNLSTFSGHMDGVKAILEQITSRSIVLLDELG 417
Query: 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKP 605
AGT+P EG AL M++L+ G+++ I TTH+ ELK Y NA MEFD+ LKP
Sbjct: 418 AGTDPKEGAALAMAILDNIGSKGTMVVI-TTHYPELKVYGYDRAKTINASMEFDQETLKP 476
Query: 606 TYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHV 665
TYK+L G+PGRS+ + IA+RLG+ V+ AR S ++N +I ++ + + E
Sbjct: 477 TYKLLLGIPGRSNGLEIAQRLGINPQVIDEARTFVSDDSQDLNNMIGDLVEQRKKAREES 536
Query: 666 HEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPS 725
+ + + ++L + L QR + ++ ARS K+ Q+ +
Sbjct: 537 ERLAKLVAKNEKVQRDL----DEKLTRFNEQRDKLYEQ-------ARS---KANHQVSMA 582
Query: 726 ASQARSLVHKRAQQLRPSASQSLHCTKVG--KNQHVLTSNFQQTTVDKVEHPATASSSVV 783
+A ++H Q L + G K ++ + Q + + ++P +SV+
Sbjct: 583 KKKADRIIHHLRQ---------LEVQQGGNVKENELIDAQGQLNALHR-DNPRLQHNSVL 632
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+ KQ + + GD V V S+G+ G E++ + GN KW
Sbjct: 633 QRAKQKHDLHK------GDAVLVKSYGQYG----------ELLSKRGNHKW 667
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 158/341 (46%), Gaps = 42/341 (12%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQT-YQDSLRLLDETNAAIEMQKHGSC 112
L LE+D++ ++ + ++ G LTQL + QT Y+ LL ET ++ +
Sbjct: 6 LETLEFDRIKGQLAQYLVSAAGHRE-LTQL--VPQTDYEAVKELLTETTDGADILR---L 59
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L+ +K ++ ++ + L E + +LQ S +S++ + + I+
Sbjct: 60 EDGIPIPQLADIKPQLKRLKIKANLNGTELAQITKVLQTS----MSVKNFFDQMREKKIK 115
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
LT + +L S+ + +++ +D DG I D AS L R + E +++Q M+
Sbjct: 116 LRVLTTQVDRLVTIPSITQRLVRSIDPDGRINDEASAKLHGIRQLITQTETEIHQQMERY 175
Query: 233 IRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
R +N + L + ++ + R I A + F G++ S+SG IEP + V N+
Sbjct: 176 TRGKNAKYLSDPIVTMRNDRYVIPVIARYRNKFGGVVHDQSASGQTLYIEPAAVVETNNR 235
Query: 290 LQQARASVTKAEEDVLLALTEKM---QVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
L+QA+ + + VL+ L++ + + D+ + E +L LD +NA+A ++
Sbjct: 236 LRQAQIEERQEMQRVLIELSQMIAPYRHDIGQNEAILG---HLDFINAKARWA------- 285
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
D K +L P+ SK E + L KA HPL+
Sbjct: 286 ------HDTKATL---PLLSK------ENHVSLRKARHPLI 311
>gi|218233457|ref|YP_002369349.1| recombination and DNA strand exchange inhibitor protein [Bacillus
cereus B4264]
gi|228960821|ref|ZP_04122456.1| hypothetical protein bthur0005_42770 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229048260|ref|ZP_04193828.1| hypothetical protein bcere0027_42280 [Bacillus cereus AH676]
gi|229129836|ref|ZP_04258802.1| hypothetical protein bcere0015_42760 [Bacillus cereus BDRD-Cer4]
gi|229147111|ref|ZP_04275470.1| hypothetical protein bcere0012_42480 [Bacillus cereus BDRD-ST24]
gi|229152748|ref|ZP_04280932.1| hypothetical protein bcere0011_42810 [Bacillus cereus m1550]
gi|296505027|ref|YP_003666727.1| DNA mismatch repair protein mutS [Bacillus thuringiensis BMB171]
gi|423584921|ref|ZP_17561008.1| MutS2 protein [Bacillus cereus VD045]
gi|423631267|ref|ZP_17607014.1| MutS2 protein [Bacillus cereus VD154]
gi|423657494|ref|ZP_17632793.1| MutS2 protein [Bacillus cereus VD200]
gi|226723046|sp|B7HF67.1|MUTS2_BACC4 RecName: Full=MutS2 protein
gi|218161414|gb|ACK61406.1| MutS2 family protein [Bacillus cereus B4264]
gi|228630726|gb|EEK87371.1| hypothetical protein bcere0011_42810 [Bacillus cereus m1550]
gi|228636360|gb|EEK92831.1| hypothetical protein bcere0012_42480 [Bacillus cereus BDRD-ST24]
gi|228653527|gb|EEL09399.1| hypothetical protein bcere0015_42760 [Bacillus cereus BDRD-Cer4]
gi|228722985|gb|EEL74362.1| hypothetical protein bcere0027_42280 [Bacillus cereus AH676]
gi|228798843|gb|EEM45822.1| hypothetical protein bthur0005_42770 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296326079|gb|ADH09007.1| DNA mismatch repair protein mutS [Bacillus thuringiensis BMB171]
gi|401235113|gb|EJR41586.1| MutS2 protein [Bacillus cereus VD045]
gi|401263840|gb|EJR69956.1| MutS2 protein [Bacillus cereus VD154]
gi|401289050|gb|EJR94771.1| MutS2 protein [Bacillus cereus VD200]
Length = 786
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V++ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIEQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEDRDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S +++ I++ AD +
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSR----NMKRFIEDMADNGV 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 115 ELPILETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|423650449|ref|ZP_17626019.1| MutS2 protein [Bacillus cereus VD169]
gi|401281608|gb|EJR87514.1| MutS2 protein [Bacillus cereus VD169]
Length = 786
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V++ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIEQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEDRDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FKEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S +++ I++ AD +
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSR----NMKRFIEDMADNGV 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 115 ELPILETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|118581340|ref|YP_902590.1| MutS2 family protein [Pelobacter propionicus DSM 2379]
gi|118504050|gb|ABL00533.1| MutS2 family protein [Pelobacter propionicus DSM 2379]
Length = 788
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 182/666 (27%), Positives = 303/666 (45%), Gaps = 123/666 (18%)
Query: 189 LIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE---V 245
+++ + +D+DG I DSAS AL++ R + L ++ + ++ ++R+ NN +FL+ +
Sbjct: 130 ILEPLAASIDQDGGIMDSASTALREIRRAKRSLASRIRKKIEEIVRD-NNIEIFLQDDFI 188
Query: 246 SSIHGRLCIRTGADQLSF-KGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEED 303
+ GR I D KG++ SSSG + +EPL +P +EL+ A E
Sbjct: 189 TQRSGRWVIPVRMDSKGMVKGVVHDVSSSGETAFMEPLEIIPFVNELENLSAEEKAEEIR 248
Query: 304 VLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEP 363
+L L+ ++ D EI ++ LD + + A ++ + P++
Sbjct: 249 ILRQLSSWIRQDAAEISACFETLLTLDELASIARFADTHALEPPSL-------------- 294
Query: 364 VTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKG 423
E + L A HPLLL Q
Sbjct: 295 --------NGEGVLRLAGARHPLLLMLQAQGA---------------------------- 318
Query: 424 EKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
L+ P+D+ + + V+VITGPN GGKTI LKT G+ V+MA
Sbjct: 319 -----------------LSRVEPLDLQLGGEGTVMVITGPNAGGKTIALKTAGVLVLMAL 361
Query: 484 SGLHILS-SEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLD 542
G+ + + + P D + D+GDEQS+ QSLSTFS H+ ++ I+ Q+ +SLVLLD
Sbjct: 362 CGMPVPADGASSTFPLLDDLLVDMGDEQSIEQSLSTFSAHVSRVAAILEQAGPRSLVLLD 421
Query: 543 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 602
E+GAGT P +G A+ +L E G+++ IATTH E+ ++ + NA ME+D
Sbjct: 422 ELGAGTEPQQGAAIACGVLRELRERGAMV-IATTHLSEIIGYVHATEGMVNAGMEYDAET 480
Query: 603 LKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFL 662
P Y+++ G PG S AI IA R G+P V+ AR++ G AS E ++ E+ R
Sbjct: 481 YTPLYRLISGQPGHSHAIEIARRYGMPDRVISFAREMLGTASEEFTSLLAELHR------ 534
Query: 663 EHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQL 722
+R LEH A+Q R+ +++ AI R L +SA
Sbjct: 535 -----------------------KRGELEHGAAQLEREREQVR---AIRRELEARSA--- 565
Query: 723 CPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSV 782
+ QAR ++A + ++ + T + +L ++ + +E + V
Sbjct: 566 --TIEQARQETREKAW----ADAREVISTARRRMNELLDEYRRERRSESIEKLRRVEAEV 619
Query: 783 VKDIKQSPR-VKRTELP----NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
+ + SPR + + P GD V + S G G V+++ P + V+ G+M+ +
Sbjct: 620 TEQL--SPRDLAGDDQPLGEVAEGDSVRIRSLGHDGRVLQLLPKQGRARVRAGSMELEVP 677
Query: 838 FTDIVT 843
+D+V
Sbjct: 678 LSDLVA 683
>gi|206977729|ref|ZP_03238620.1| MutS2 family protein [Bacillus cereus H3081.97]
gi|206744030|gb|EDZ55446.1| MutS2 family protein [Bacillus cereus H3081.97]
Length = 786
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V++ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIEQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LATHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|160937675|ref|ZP_02085035.1| hypothetical protein CLOBOL_02565 [Clostridium bolteae ATCC
BAA-613]
gi|158439320|gb|EDP17072.1| hypothetical protein CLOBOL_02565 [Clostridium bolteae ATCC
BAA-613]
Length = 812
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 131/397 (32%), Positives = 219/397 (55%), Gaps = 30/397 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI++++ R+ +L++TGPNTGGKT+ LKTVGL +M +SGLHI + E +++ FD VFA
Sbjct: 324 VPINVWLGREFDLLIVTGPNTGGKTVSLKTVGLFTLMGQSGLHIPAWEGSELAIFDQVFA 383
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I++++ S+SL L DE+GAGT+P EG AL +++L +F
Sbjct: 384 DIGDEQSIEQSLSTFSAHMTNIVRILNEADSRSLCLFDELGAGTDPTEGAALAIAIL-SF 442
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ T+ATTH+ ELK S ENAC EF+ L+PTY++L G+PG+S+A I++
Sbjct: 443 LHNMKCRTMATTHYSELKVFALSTPGVENACCEFNVETLQPTYRLLIGIPGKSNAFAISQ 502
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
+LGLPG ++ +A+ A +++ +E + + E + +L L +
Sbjct: 503 KLGLPGYIIDDAKSHLEAKDESFEDLLTSLESSRLTIEKEQAEINAYKDEIASLKNRLTQ 562
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
++ E RK + + +A A+ ++ +A+ + +Q+ A
Sbjct: 563 KEERLDE-------RKDKILKNATEEAQRILR-----------EAKETADQTIKQINKLA 604
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
+ S ++ + L ++T P S + SP+ + +GD V
Sbjct: 605 ASSGVGKELEAERARLRDQLKKTDEKLTVKPKGPSQPI------SPKKLK-----IGDGV 653
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V S KGTV + ++ ++ VQ+G ++ ++ D+
Sbjct: 654 KVLSMNLKGTVSTLPNARGDLYVQMGILRSLVNIRDL 690
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 143/307 (46%), Gaps = 21/307 (6%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAI-EMQKHG 110
++L+ LE+DK+ + ++ +A + LG+ L Q S + ++ +T A+ ++ G
Sbjct: 4 KALKTLEYDKIINQLTEYAASPLGK--ALCQNLSPSSDLEEVRTWQAQTTDAVTRIRLKG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA--- 167
S S +G+ + +++ + S L E L++ +LL + + R ++DA
Sbjct: 62 SVSF--SGI--RDIGDSLKRLDIGSSLSIPELLSISSLLTVAARAKAYGRHDGEDDARGT 117
Query: 168 ----DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
D + PL + L + IK + DE + D ASP L R +++
Sbjct: 118 GEPQDDFDSLEPLFAGLEPLTPLNNEIKRCILSEDE---VADDASPGLSHVRRSMKVTAD 174
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIH-GRLCIRTGADQLSFKGLLLSSSSGIGSV--IEP 280
+++ ++ ++ N N L V ++ GR C+ ++ + ++ S GS IEP
Sbjct: 175 RIHTQLNSIL-NSNRSYLQDAVITMRDGRYCLPVKSEYKNQVSGMVHDQSATGSTLFIEP 233
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
++ + LN+E+++ K E VL +L+ + +E+ + + QLD + A+A +
Sbjct: 234 MAIIRLNNEMRELEIQEQKEIEAVLASLSNQAAPCTEELRMDMELLAQLDFIFAKAGLAR 293
Query: 341 SFGGTSP 347
+ ++P
Sbjct: 294 HYKCSAP 300
>gi|423615062|ref|ZP_17590896.1| MutS2 protein [Bacillus cereus VD115]
gi|401261918|gb|EJR68069.1| MutS2 protein [Bacillus cereus VD115]
Length = 786
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 143/402 (35%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNRERVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E ++ K QK + +++ + +A ++H+ +QLR
Sbjct: 555 -QRQIIEFNEERDEKLLKAQK-------------EGEEKVEAAKKEAEGIIHE-LRQLRK 599
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
+ L + ++ A+ +VK KQ VK T +
Sbjct: 600 AQ---------------LVNVKDHELIEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + L D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVELQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ V+S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDVRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRNQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|228987801|ref|ZP_04147910.1| hypothetical protein bthur0001_44690 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228771849|gb|EEM20306.1| hypothetical protein bthur0001_44690 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 786
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V++ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIEQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEDRDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LATHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|423373498|ref|ZP_17350837.1| MutS2 protein [Bacillus cereus AND1407]
gi|401096462|gb|EJQ04509.1| MutS2 protein [Bacillus cereus AND1407]
Length = 786
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V++ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIEQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LATHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|421879707|ref|ZP_16311167.1| MutS2 protein [Leuconostoc citreum LBAE C11]
gi|390446416|emb|CCF27287.1| MutS2 protein [Leuconostoc citreum LBAE C11]
Length = 801
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 217/802 (27%), Positives = 350/802 (43%), Gaps = 132/802 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLG-REATLTQLWS----INQTYQDSLR--LLDETNAAIEM 106
L+ LE+DK+ ++ F T G +EA Q S IN ++ L+D I +
Sbjct: 6 LQTLEYDKIKLQLNDFLSTPTGLQEANELQPVSDVDLINHWLAETADAVLIDRLKGGIPL 65
Query: 107 QKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
K + L +++ SA + LR +A F E +Q AI E
Sbjct: 66 SKLSDITPHLKRLNIEASLSATELSEMSLVLRNTSTIA-----SFFEQMQ---DEAIGES 117
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
+R +P + L + + I +D G + D AS LK R ++ E+ +
Sbjct: 118 ----LRVLP--EQAKNLVTLPDITRQIQIAIDSSGRLNDEASYELKHVRDRINGTEQAVK 171
Query: 227 QLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSA 283
M R + + L + +I R + A+ S G ++ S G +EP +
Sbjct: 172 NQMQAYTRGKTAQYLSDPIVTIRSDRYVLPVKAEYRSQFGGVVHDQSQTGQTLYVEPQAV 231
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN++L + R E+ VL L+ + +EI + + D VNA+A +
Sbjct: 232 VTLNNKLSELRVQEQAEEQRVLQELSATLAPHTEEIANNVTILGHFDFVNAKARLAARLD 291
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLE 403
P + E + L +A+HPLL KDL
Sbjct: 292 AMQPMV----------------------NTENKVDLQQAWHPLL-----------DKDLA 318
Query: 404 SANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGP 463
AN DI + + ++ITGP
Sbjct: 319 VAN-----------------------------------------DIALGDGYKAIIITGP 337
Query: 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523
NTGGKTI +KT+G+ +MA+SGL I + + V F +FADIGDEQS+ QSLSTFS H+
Sbjct: 338 NTGGKTITIKTLGILQLMAQSGLFITTKRPSAVGVFHEIFADIGDEQSIEQSLSTFSSHM 397
Query: 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583
I ++I ++LV+ DE+GAGT+P EG AL +++L+ A G+ + IATTH+ ELK
Sbjct: 398 ANIVSMIDCIDDKTLVIFDELGAGTDPAEGAALAIAILDKVASLGAFV-IATTHYPELKL 456
Query: 584 LKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAA 643
Y+ NA M FD LKPTY+ L GVPG+S+A+ IA+RLG V+ A L A
Sbjct: 457 YGYNRPETLNASMVFDVSTLKPTYQFLMGVPGQSNALAIAKRLGFGDDVIGAATALTSDA 516
Query: 644 SAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEH--CASQRFRKV 701
++N++I +L+ R + +H S++ +
Sbjct: 517 DQDLNQMI----------------------------ADLVAQRDAVKQHDVALSEQLKAT 548
Query: 702 QKISDA-AAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVL 760
+K S+A + R L + A+ + + ++A +V +Q S+ + ++ Q
Sbjct: 549 EKQSEALSEQQRQLEKERAKIVLDAKNEANHIVAATKKQAEQMISE-IRKARLNAGQSAG 607
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
+ Q K + +S ++ K + KR + GD + V S+G++GT+IK +
Sbjct: 608 ELSEQDLQAKKRQLDGLRQNSSLEKNKILQKAKRAKQLAAGDEITVQSYGQQGTLIK-QH 666
Query: 821 SKEEIVVQVGNMKWIMKFTDIV 842
S + V++G +K ++ DIV
Sbjct: 667 SNGQWEVEMGILKMLVDEDDIV 688
>gi|229019772|ref|ZP_04176575.1| hypothetical protein bcere0030_42720 [Bacillus cereus AH1273]
gi|229025999|ref|ZP_04182383.1| hypothetical protein bcere0029_42850 [Bacillus cereus AH1272]
gi|228735280|gb|EEL85891.1| hypothetical protein bcere0029_42850 [Bacillus cereus AH1272]
gi|228741497|gb|EEL91694.1| hypothetical protein bcere0030_42720 [Bacillus cereus AH1273]
Length = 786
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 146/400 (36%), Positives = 222/400 (55%), Gaps = 37/400 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+R+I+E +R K+ K V K ++ +A + + + +QLR +
Sbjct: 555 -QRQIIEFN-DERDEKLLK-----------VQKEGEEKVEAAKKEAEGIIQELRQLRKAQ 601
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPNVG 801
V H L ++ A+ +VK KQ VK T + G
Sbjct: 602 L-------VNVKDHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLRAG 644
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
D V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 645 DEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 143/300 (47%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + + + + L D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FGEIVELQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|452990484|emb|CCQ98332.1| MutS2 protein [Clostridium ultunense Esp]
Length = 829
Score = 216 bits (549), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 141/403 (34%), Positives = 217/403 (53%), Gaps = 43/403 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + +LVITGPNTGGKT+ LKT+GL +MA++GL I + E ++V F VFA
Sbjct: 360 VPIDVEVGDSFTMLVITGPNTGGKTVTLKTIGLMTLMAQAGLQIPAGEGSEVAVFSQVFA 419
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I II + T SL+LLDE+GAGT+P EG AL +++LE
Sbjct: 420 DIGDEQSIEQSLSTFSSHMTHIVKIIEEMTPDSLILLDELGAGTDPTEGAALAIAILEEL 479
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ + +ATTH+ ELK Y++ NA +EFD L PTY++L G+PGRS+A IAE
Sbjct: 480 YRRDARV-VATTHYSELKVYAYNHPGVMNASVEFDVETLSPTYRLLLGIPGRSNAFLIAE 538
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGLP ++ AR +++E E+E+ T E EA + + + ++R
Sbjct: 539 RLGLPKEIIDKAR-------GQVDEESRELEQMITNLAESRKEAEMKREEAERIQEEMVR 591
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
R + E + + + +AA A +V K+ ++ + R L + +++
Sbjct: 592 LRNSLQEEKERLERERDRLLREAAREAEEVVKKARREAEEVIQELRRLGEEEGARIK--- 648
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPN----- 799
+H L +E ++ I ++ R +R ++P+
Sbjct: 649 ------------EHRL-----------IEAKKRLDEAI--PILETGRRERGDVPSSPHGL 683
Query: 800 -VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V+V S KG V++ ++E +VQVG +K + D+
Sbjct: 684 KAGDEVYVHSLKLKGIVLEA-LGEDEYLVQVGILKTKLNGRDL 725
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 139/306 (45%), Gaps = 28/306 (9%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGRE--ATLTQLWSINQTYQDSLRLLDETNAAIEMQKHG 110
+++VLE+DK+ +A +SL RE LT + TY+ E A E G
Sbjct: 48 TVKVLEFDKVIEQAMRYASSSLARERMERLTPFF----TYE-------EVEEAQEATAEG 96
Query: 111 SCSLDLTGV----DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQ-LSLRAAIKE 165
L G + ++ +IR R L P E L + L L+ L A KE
Sbjct: 97 VTVYRLRGEVPLGGIHDIRPSIRRARMGGVLSPQEFLDLADTLAAGRRLKHFLLELADKE 156
Query: 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
+ + + + ++L I +DE G + D ASP L++ R +++ LE +
Sbjct: 157 SLPILKEYAERIEGL------KNLETKIHGTIDEYGEVLDGASPLLRKIRAEIKGLESGI 210
Query: 226 YQLMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPL 281
+ +D ++++ + + + E V+ +GR I + + +F GL+ S+SG IEP
Sbjct: 211 KERLDRMVKDPSYQKMIQEQIVTLRNGRYVIPVKQEYRTAFGGLVHDQSASGATLFIEPE 270
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ V LN+EL+ A+ K E +L LT + D + + + +LD + +A Y+LS
Sbjct: 271 AVVRLNNELRDAKLKEEKEIERILRELTHTTAEEADALSVNVESLAELDFIFTKAKYALS 330
Query: 342 FGGTSP 347
+ P
Sbjct: 331 IKASRP 336
>gi|385810120|ref|YP_005846516.1| DNA mismatch repair protein MutS2 [Ignavibacterium album JCM 16511]
gi|383802168|gb|AFH49248.1| DNA mismatch repair protein MutS2 [Ignavibacterium album JCM 16511]
Length = 782
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 217/813 (26%), Positives = 357/813 (43%), Gaps = 168/813 (20%)
Query: 57 LEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-----MQKHGS 111
LE+DKL +S + T G+ L N DSL ++ + +E + K G+
Sbjct: 10 LEFDKLLKHISGYCITDKGKSLIL------NLAPTDSLDKINFQGSIVEEAKNFLIKQGN 63
Query: 112 CSLDLTGVDLS--LVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+DL+ DLS L +S I + L + L + L + S + +L + K
Sbjct: 64 IQIDLSS-DLSESLFQSRIE----GAILSTKKMLEIRNLARTSRLIN-NLFSKDK----- 112
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ + L++ QLF +R I +++ +DG IK++AS L + R +++ + +L + +
Sbjct: 113 -VNYPLLSEYTQQLFSDRLFEHQIEKIISDDGDIKENASKTLTEIRKEIRAKKDELIKSI 171
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
+ +I+ E + E ++ GR+ I A+ + +G + S SS+G IEP +
Sbjct: 172 NRIIKTLKEEDIVREDYLTLRDGRMVIPVKAEHKRHIRGFIHSESSTGQTVYIEPEETLE 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+++ S + E +L LT + + E+ + I +D V ARA YSL G+
Sbjct: 232 LNNDIVSLSFSERREIERLLRELTRLVGQNSSELISSFDRITFIDSVFARANYSLEIVGS 291
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
P I H+P+ + A HPLL+++
Sbjct: 292 FPGID---------NHKPIN-------------IIDARHPLLIKK--------------- 314
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
L R K VP+++ + RV++ITGPN
Sbjct: 315 ---LGRNK------------------------------TVPLNLKL-ENDRVVIITGPNA 340
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKT+G+ +M +SG+HI + + F V DIGD+QS+ LSTFS HLK
Sbjct: 341 GGKTVVLKTIGILTIMLQSGIHIPAHPDSNFHLFSKVLIDIGDQQSIEDDLSTFSSHLKN 400
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
+ +I++++ SLVLLDEIG GT+P EG +L ++L+ E G+L+ A+THHG LK
Sbjct: 401 LNHILNEADKNSLVLLDEIGTGTDPTEGASLAAAILKKLLEKGALV-FASTHHGSLKLFA 459
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
Y+ NA M+F+ + PTY G+ G S A IAER+G+ V+ A +L +
Sbjct: 460 YNVPGMVNAAMQFNHETISPTYVFKLGILGSSYAFQIAERIGMQKDVIDEAEKLMDSEKH 519
Query: 646 EINEVIIEMERFKTQF---LEHVHEARHFLMLSRNLHKN-----------LLRTRRKILE 691
+ + I E+E Q L + + L NL+K +LR + +
Sbjct: 520 TLEKFISEVEAKSNQLEKKLAELEKENSRLKGLSNLYKQSYEKLEKEKKEILRKAKTEAD 579
Query: 692 HCASQRFRKVQK-ISD-AAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLH 749
RKV+K I D + A V K A+Q R L + A +L+
Sbjct: 580 KYLEDVNRKVEKVIKDIKESSAEKTVIKEAKQTI------RELKQETANELKE------- 626
Query: 750 CTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSF 809
FQ+ ++ K + GD V + +
Sbjct: 627 --------------FQEESITKDDFSE------------------------GDFVKLKNS 648
Query: 810 GKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
G +I+++ K + V VG++K + K +DI+
Sbjct: 649 NAVGKIIEIDRDKNKATVLVGSIKMLAKLSDII 681
>gi|294793864|ref|ZP_06759001.1| MutS2 protein [Veillonella sp. 3_1_44]
gi|294455434|gb|EFG23806.1| MutS2 protein [Veillonella sp. 3_1_44]
Length = 792
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 202/694 (29%), Positives = 324/694 (46%), Gaps = 154/694 (22%)
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L+++ MP T I F +V DE G + D+ASP L R + K+
Sbjct: 116 LWVQDMPNTDRIENRF---------KRVFDEKGELLDTASPKLASLRNTIIKTREKIKND 166
Query: 229 MDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAV 284
+ ++ +++N+ F E ++ + R I + + F GL+ S++G IEP+ V
Sbjct: 167 IQAILHDKDNQKYFQETIITQRNNRYVIPVKQEYRQYFDGLIHDRSATGQTLYIEPMRLV 226
Query: 285 PLNDELQQARASVTKAEEDVLL------ALTEKMQVDL-DEIEKMLNGIIQLDVVNARAT 337
LN+ELQ+A + E++VL AL ++ DL D EK + ++ V +A+
Sbjct: 227 NLNNELQEA---LIGEEQEVLRIYRELSALVKQHSNDLMDACEK----VSHIEFVYGKAS 279
Query: 338 YSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQ 397
++S+ G P I S++R T+ L +A HPL+
Sbjct: 280 LAISYKGV-PAIL-------------------STDR--TVNLMRARHPLI---------- 307
Query: 398 AWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRV 457
P M VP +I + R+
Sbjct: 308 ---------------------------------PPNM---------VVPTNIQLGTSYRI 325
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
L+ITG NTGGKT+ LKT+GL +M + GL I + + +P F ++FADIGDEQS+ SLS
Sbjct: 326 LLITGSNTGGKTVSLKTLGLLSLMNQCGLFIPADHGSMLPVFHNIFADIGDEQSIEASLS 385
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ Q+ +II LVLLDE+G+GT+P EG+AL +S+LE F + G+L+ + +TH
Sbjct: 386 TFSAHMTQVISIIKHCGPNDLVLLDELGSGTDPEEGSALAVSILEFFRKKGALMMV-STH 444
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y + EN +EFDE LKPTY++ GV G S A++IA RLGL +V+ A
Sbjct: 445 YNELKNYAYHTEGIENGHVEFDERTLKPTYRLHIGVAGSSHALSIAARLGLQKDIVERAT 504
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ +K+QF H E +LS +L++ L + AS+R
Sbjct: 505 E------------------YKSQFGSHEMEE----VLS-DLNEQLRK---------ASER 532
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
R ++K D R + K +Q ++ R + +AQ S +SL +
Sbjct: 533 ERALKKELDETRRMRGQLEKEKKQF----NENRKQILAKAQADAESMKRSLRVEGEAIIK 588
Query: 758 HVLTSNFQQTTVDKVEHPATAS----SSV------VKDIKQSPRVKRTELPNVGDLVHVS 807
L + F +T D+++ A+ SSV V D ++S + VG V+V+
Sbjct: 589 Q-LKAQFSETNKDRLQSAINAARKGISSVHVPEAAVDDDRKSLTA---DAIKVGQAVYVT 644
Query: 808 SFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
S GTV+ + ++ + V + + +K +++
Sbjct: 645 SLRSLGTVLSINGNR--VNVDINGLTATVKVSEL 676
>gi|325294981|ref|YP_004281495.1| MutS2 protein [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065429|gb|ADY73436.1| MutS2 protein [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 756
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 174/604 (28%), Positives = 290/604 (48%), Gaps = 96/604 (15%)
Query: 57 LEWDKLCHSVSSFARTSLGREATLTQL-WSINQTYQDSLRLLDETNAAIEMQKHGSCSLD 115
LE++K+ + S A++ G+ ATL+ + + + + +LR+ T+ +++ L+
Sbjct: 9 LEFNKILKATSELAKSEPGKSATLSLVPLTKREEVERNLRI---TDTLVKLLSEKQLPLE 65
Query: 116 -LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFM 174
+ ++ K ++ + L E ++++ +++ S L+ + +++ E RF
Sbjct: 66 SFPDISKTINKLSVE----GAILSVEELVSILKVIRQSSILK-NFFSSLDE------RFS 114
Query: 175 PLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIR 234
+ +L L + + + +D+ G I D+ASP LK R +++ ++ + ++ L+
Sbjct: 115 RIKYFGERLSRFEGLREVLERSIDDTGEILDTASPRLKSIRKNIRVTTLRIREKLESLVN 174
Query: 235 NENNESLFLEVSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQ 292
+ V+ GR I + F G++ SSSG +EP S + N+ L++
Sbjct: 175 RYEDLCPDRIVTEREGRYVILVKPHFRKKFSGIVHDRSSSGQTLYVEPASVIEDNNRLRE 234
Query: 293 ARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLP 352
+A + + +L+ L+ K+ E+ +I+LD A A SL GT P
Sbjct: 235 LKAEEKEEIKRILIELSWKVSERRVELLTSFRTLIELDRRYATALLSLKLKGTLPEFSEE 294
Query: 353 QDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRR 412
D+K +A HPL+L K+
Sbjct: 295 IDLK------------------------EAKHPLILLSEKE------------------- 311
Query: 413 KLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICL 472
VP+DI + LVITGPNTGGKT+ L
Sbjct: 312 -------------------------------VVPVDIKLKNG---LVITGPNTGGKTVTL 337
Query: 473 KTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ 532
KTVGL MMA+SG I SE +K+ F ADIGDEQS+ QSLSTFS H+K I I+ +
Sbjct: 338 KTVGLLSMMAQSGFLIPVSEGSKLRLFKKWMADIGDEQSIEQSLSTFSAHVKNISEILRE 397
Query: 533 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 592
+ SLVLLDE+GAGT+P+EG+ L + +L+ E + + IATTH +K Y +D+++
Sbjct: 398 ADKDSLVLLDELGAGTDPIEGSTLAIGILKYLKEKNAKV-IATTHFTPVKLFAYKDDYYD 456
Query: 593 NACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVII 652
A + FDE LKP YK+ +G+ GRS A+ IA+R G+P V++ AR L A ++I
Sbjct: 457 VASVMFDEETLKPLYKLAYGIIGRSYALEIAKRYGMPEEVIETARSLMTAEDRLAEDIIA 516
Query: 653 EMER 656
+E+
Sbjct: 517 ALEK 520
>gi|450145168|ref|ZP_21874440.1| putative DNA mismatch repair protein [Streptococcus mutans 1ID3]
gi|449149621|gb|EMB53414.1| putative DNA mismatch repair protein [Streptococcus mutans 1ID3]
Length = 776
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 129/297 (43%), Positives = 172/297 (57%), Gaps = 22/297 (7%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L++ + D+ T ++ITGPNTGGKTI LKT+G+ +MA+SGL IL+ E +KV F
Sbjct: 307 LSNSIANDLHFEHDTTTILITGPNTGGKTIMLKTLGIIQLMAQSGLPILADEGSKVAVFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I+ ++ SLVL DE+GAGT+P EG AL MS+
Sbjct: 367 DIFADIGDEQSIEQSLSTFSSHMTHIVEILQKANKDSLVLFDELGAGTDPQEGAALAMSI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ TTH+ ELK +F ENA MEFD V L PTY + GVPGRS+A
Sbjct: 427 LEHLRLS-DIKTMITTHYPELKAYGIETEFIENASMEFDMVTLSPTYHFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHK 680
IA RLGL I+V A L S ++N++I ER + Q + E+R L R + +
Sbjct: 486 EIARRLGLSEIIVAEAENLTNTDS-DVNKII---ERLENQTI----ESRRRLDNIREVEQ 537
Query: 681 NLLRTRRKI------LEHCASQRFR----KVQKISDAAAIARSLVHKSAQ---QLCP 724
L+ R + H + R K Q+I D A + K+ Q QL P
Sbjct: 538 ENLKFNRAVKKLYNEFSHAQDKELRKAKLKAQEIVDKALAESDFILKNLQDKAQLKP 594
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 138/322 (42%), Gaps = 28/322 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L+ LE+DK+ + F ++ G + L L + + + + A Q++ S
Sbjct: 6 LKALEFDKVKKQFAHFLQSEQG-QMELNDLLPMTNQEKIERSFAEIADVAQIFQEYASFG 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ D+S ++R + + L E LAV +LQ S L+ D Y
Sbjct: 65 FGHSQ-DIS---ESLRRLELGADLNTQELLAVKRILQMSAELK-----------DFYDNL 109
Query: 174 MPLTQMIMQLFVNR----SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ I+ + ++ +Q +++ G I+D ASP L + R + E+++ Q++
Sbjct: 110 ENVDLQILDCLFEKVETFPDLQGSLQAINDGGFIEDFASPELTKIRHHIHQNEQQIRQIL 169
Query: 230 DMLIRNENN---ESLFLEVSSIHGRLCIRT-GADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
+++ + + E+L ++S GR + + G++ S+SG IEP + V
Sbjct: 170 QEMLKKQGDLLAENL---IASRSGRSVLPVKNTYRHRIAGVVHDISASGNTVYIEPRAVV 226
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+E+ QARA +L L+++++ D I + +D V + Y
Sbjct: 227 NLNEEMTQARADERHEMTRILHDLSDRLRSQTDIIGNNAWLLGHIDFVRGKYLYMRENQA 286
Query: 345 TSPNIFLPQDMKRSLTHEPVTS 366
+ P++ Q ++ P+ S
Sbjct: 287 SLPSLTTDQTIRLLSVRHPLLS 308
>gi|116494335|ref|YP_806069.1| MutS family ATPase [Lactobacillus casei ATCC 334]
gi|122264237|sp|Q03AZ5.1|MUTS2_LACC3 RecName: Full=MutS2 protein
gi|116104485|gb|ABJ69627.1| MutS family ATPase [Lactobacillus casei ATCC 334]
Length = 786
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 225/396 (56%), Gaps = 49/396 (12%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI + K + +VITGPNTGGKTI LKT+GL +M +SGL I + + +++ FD VFADIG
Sbjct: 319 DIPLGDKYQAMVITGPNTGGKTITLKTLGLLQLMGQSGLFIPADDESRIGIFDEVFADIG 378
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ Q+LSTFS H+ I +I+ Q + SLVL DE+GAGT+P EG AL +++L+A E
Sbjct: 379 DEQSIEQNLSTFSAHMDNIVHILKQLSQNSLVLFDELGAGTDPQEGAALAIAILDAVGEV 438
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L+PTY++L GVPGRS+A +I+ RLG
Sbjct: 439 GAYV-VATTHYPELKLYGYNTAKTINASMEFDSKTLQPTYRLLVGVPGRSNAFDISARLG 497
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
LPG++V+ A+ + + S E+N +I ++E+ + AR L ++++H L +
Sbjct: 498 LPGVIVERAKSMISSDSHELNNMISDLEKQRKAAETAYEAARRQLADAQSVHDELAAAYK 557
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
K ++R ++Q+ D A +LV K A++ K +QLR
Sbjct: 558 KF----TTERDAQLQQAKDKA---NTLVDK-----------AQTKADKIIKQLR-----Q 594
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP---------RVKRTELP 798
+ T G TV E+ A+ + +K + Q R + +
Sbjct: 595 MQLTNPG-------------TVK--ENQLIAAKTALKQLHQDEPLQKNRILRREREKQAL 639
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+VGD V V+S+ + GT+++ + K+ VQ+G +K
Sbjct: 640 HVGDEVKVASYDQTGTLLE-QFDKKHWQVQLGILKM 674
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 127/304 (41%), Gaps = 27/304 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL---LDETNAAIEMQKHG 110
L+ LE+DK+ ++ T+ GR QL Q D + + LDET G
Sbjct: 6 LKTLEYDKIQQALLGQVVTANGR-----QLVQAMQPLTDPVAVQQALDET-------ADG 53
Query: 111 SCSLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
+ +L L G L + A++ V + L E ++ +LQ + L D
Sbjct: 54 ASALRLKGGIPVPQLENIDPALKRVDIGAVLNGQELASISRVLQTVSAIDKFL-----TD 108
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
I F L + L V L + + VD DG++ D ASP L R Q++ +E ++
Sbjct: 109 LQDQIDFRQLYTLQESLTVLPQLSRRLKTAVDPDGTLTDEASPQLHGVREQIKSIEGEIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIH-GRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSA 283
M R ++ L + +I R I A+ + G ++ S G IEP +
Sbjct: 169 GKMTNYTRGAQSKYLSDPIVTIRDDRYVIPVKAEYRAKFGGVVHDQSATGQTLFIEPQAI 228
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+ L++A+ + +L L+ ++ +I+ + D +NA+A + +
Sbjct: 229 VALNNRLREAQLAEVAEINRILAELSNELAPYTGQIKANAAVLGHFDFINAKARLAKAEK 288
Query: 344 GTSP 347
T P
Sbjct: 289 ATEP 292
>gi|229099010|ref|ZP_04229945.1| hypothetical protein bcere0020_42340 [Bacillus cereus Rock3-29]
gi|229118041|ref|ZP_04247401.1| hypothetical protein bcere0017_43110 [Bacillus cereus Rock1-3]
gi|407707068|ref|YP_006830653.1| oxidoreductase, Gfo/Idh/MocA [Bacillus thuringiensis MC28]
gi|423377604|ref|ZP_17354888.1| MutS2 protein [Bacillus cereus BAG1O-2]
gi|423440711|ref|ZP_17417617.1| MutS2 protein [Bacillus cereus BAG4X2-1]
gi|423463776|ref|ZP_17440544.1| MutS2 protein [Bacillus cereus BAG6O-1]
gi|423533128|ref|ZP_17509546.1| MutS2 protein [Bacillus cereus HuB2-9]
gi|423541608|ref|ZP_17517999.1| MutS2 protein [Bacillus cereus HuB4-10]
gi|423547839|ref|ZP_17524197.1| MutS2 protein [Bacillus cereus HuB5-5]
gi|423622372|ref|ZP_17598150.1| MutS2 protein [Bacillus cereus VD148]
gi|228665490|gb|EEL20972.1| hypothetical protein bcere0017_43110 [Bacillus cereus Rock1-3]
gi|228684508|gb|EEL38451.1| hypothetical protein bcere0020_42340 [Bacillus cereus Rock3-29]
gi|401171141|gb|EJQ78374.1| MutS2 protein [Bacillus cereus HuB4-10]
gi|401178276|gb|EJQ85456.1| MutS2 protein [Bacillus cereus HuB5-5]
gi|401261512|gb|EJR67672.1| MutS2 protein [Bacillus cereus VD148]
gi|401638453|gb|EJS56203.1| MutS2 protein [Bacillus cereus BAG1O-2]
gi|402418842|gb|EJV51131.1| MutS2 protein [Bacillus cereus BAG4X2-1]
gi|402421320|gb|EJV53580.1| MutS2 protein [Bacillus cereus BAG6O-1]
gi|402464361|gb|EJV96057.1| MutS2 protein [Bacillus cereus HuB2-9]
gi|407384753|gb|AFU15254.1| recombination and DNA strand exchange inhibitor protein [Bacillus
thuringiensis MC28]
Length = 786
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 143/402 (35%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E ++ K QK + +++ + +A ++H+ +QLR
Sbjct: 555 -QRQIIEFNEERDEKLLKAQK-------------EGEEKVEAAKKEAEGIIHE-LRQLRK 599
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
+ L + ++ A+ +VK KQ VK T +
Sbjct: 600 AQ---------------LVNVKDHELIEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + L D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVELQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ V+S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDVRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRNQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|420210593|ref|ZP_14716016.1| MutS2 family protein [Staphylococcus epidermidis NIHLM003]
gi|394276044|gb|EJE20400.1| MutS2 family protein [Staphylococcus epidermidis NIHLM003]
Length = 782
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 216/387 (55%), Gaps = 40/387 (10%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F++V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSIFENVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+K I I+ + SL+L DE+GAGT+P EG AL MS+L+ GSL+ +ATTH
Sbjct: 392 TFSSHMKNIVEILQDADQNSLILFDELGAGTDPSEGAALAMSILDYVRRLGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EIN +I +E + + E + ++ H L S++
Sbjct: 511 TMIGTDEQEINAMIESLEHNSKRVDQQRIELDRLVREAQETHDAL------------SKQ 558
Query: 698 FRKVQKISDAAAIARSLVHKS---AQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG 754
+++ Q +SL+ ++ A Q SA++ + K + LR +
Sbjct: 559 YQQYQNYE------KSLMEEAKEKANQRVKSATKEADEILKELRNLRDYKGAEV------ 606
Query: 755 KNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGT 814
+H L +Q D+ E K IKQ + K+ + + GD V V S+G+KG
Sbjct: 607 -KEHELIDKKKQLD-DQYE---------AKSIKQHVQKKKYDTIHAGDEVKVLSYGQKGE 655
Query: 815 VIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V+++ EE VVQ+G +K + D+
Sbjct: 656 VLEL-VGNEEAVVQMGIIKMKLPIEDL 681
>gi|423411664|ref|ZP_17388784.1| MutS2 protein [Bacillus cereus BAG3O-2]
gi|423432549|ref|ZP_17409553.1| MutS2 protein [Bacillus cereus BAG4O-1]
gi|401104989|gb|EJQ12957.1| MutS2 protein [Bacillus cereus BAG3O-2]
gi|401115682|gb|EJQ23529.1| MutS2 protein [Bacillus cereus BAG4O-1]
Length = 786
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEDRDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S +++ I++ AD +
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSR----NMKRFIEDMADNGV 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 115 ELPILETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEVERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|229105178|ref|ZP_04235827.1| hypothetical protein bcere0019_43120 [Bacillus cereus Rock3-28]
gi|228678104|gb|EEL32332.1| hypothetical protein bcere0019_43120 [Bacillus cereus Rock3-28]
Length = 786
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 143/402 (35%), Positives = 223/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E ++ K QK + +++ + +A ++H+ +QLR
Sbjct: 555 -QRQIIEFNEERDEKLLKAQK-------------EGEEKVEAAKKEAEGIIHE-LRQLRK 599
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
+ L + ++ A+ +VK KQ VK T +
Sbjct: 600 AQ---------------LVNVKDHELIEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + L D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVELQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ V+S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDVRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRNQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVREKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|449017364|dbj|BAM80766.1| DNA mismatch repair protein MutS, chloroplast precursor
[Cyanidioschyzon merolae strain 10D]
Length = 1029
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 178/643 (27%), Positives = 293/643 (45%), Gaps = 113/643 (17%)
Query: 44 DKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQ---LWSINQTYQDSLRLLDET 100
++ S V+ + +LE+ ++ +SS A T GR+ L++ + ++ T Q S RL+ T
Sbjct: 145 EQVSLVMESTAELLEFGRVLECLSSLALTQTGRQRLLSRGLMIHLLSLTKQQSERLMQLT 204
Query: 101 NAAIEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR 160
+ +++ S L V+ I+ + + L E L + +Q + L+ +
Sbjct: 205 AEVVTIERRTPTSPFEVLKRLPDVEGLIQRLHKKGNLEGEELLRIANFVQVAANLKKASA 264
Query: 161 AAIKEDA----DLYI--------------RFMPLT----QMIMQLFVNR-----SLIKSI 193
+ + + D Y+ PL +Q ++R + I
Sbjct: 265 ECLMDSSSASPDAYMSSPAFDSTSCTNQMHTEPLAVQKCSAELQSILDRVQPVSAAASEI 324
Query: 194 MQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLC 253
+DE G +++AS L+ R Q+Q ++ ++ + +I+++ + ++ + R
Sbjct: 325 FATLDETGRPRETASDELRVVRTQLQRIKERIKDELQRIIQSKGDALQDRTPTTRYDRQV 384
Query: 254 IRTGADQLSFKGLLLSSSSGIGSVI--EPLSAVPLNDELQQARASVTKAEEDVLLALTEK 311
+ A ++ S GS + EP + V LN EL++ + E D+ L+++
Sbjct: 385 LAVKATHKRRIPGIVHDYSNTGSTVFVEPHAIVELNSELRRLSRRESAIERDIWNQLSKR 444
Query: 312 MQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSS 371
+ + +I +D ARA Y+ G + ++
Sbjct: 445 LHAASVRLSSTFEALIDIDFSVARARYARHIGASLVRF--------------------AA 484
Query: 372 EREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSP 431
+ E + + A HPLLL W+ L+S
Sbjct: 485 DSEMPVDIRGACHPLLL----------WRSLKS--------------------------- 507
Query: 432 SEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI--- 488
+ VPID + ++TG N GGKT+ KT+GL V+MAKSG+ I
Sbjct: 508 ---------MESVVPIDFHLRGIASAAILTGANAGGKTLAAKTLGLIVLMAKSGIPIPRR 558
Query: 489 ----------LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSL 538
L E VP+FD V ADIGDEQSL Q+LSTFSGH+++IG I+ +T+ SL
Sbjct: 559 HADPNMSPTTLLDEDVTVPYFDRVLADIGDEQSLEQNLSTFSGHIRRIGEILQCATADSL 618
Query: 539 VLLDEIGAGTNPLEGTALGMSLLEAFAESGSL-LTIATTHHGELKTLKYSN-DFFENACM 596
VLLDE+GAGT+P EG ALG++L+ E ++ TTHH ELKTL + +EN +
Sbjct: 619 VLLDELGAGTDPAEGAALGIALVRYLVEKKNVRFVFVTTHHSELKTLFFMEPSRYENVSV 678
Query: 597 EFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 639
EFD +L+PTY++LWGV GRS A+ +A RLGL ++Q A L
Sbjct: 679 EFDTDRLEPTYRLLWGVAGRSYALLVARRLGLDHDILQEAENL 721
>gi|329927098|ref|ZP_08281454.1| recombination and DNA strand exchange inhibitor protein
[Paenibacillus sp. HGF5]
gi|328938675|gb|EGG35054.1| recombination and DNA strand exchange inhibitor protein
[Paenibacillus sp. HGF5]
Length = 637
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 125/286 (43%), Positives = 174/286 (60%), Gaps = 32/286 (11%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+D+ + +++TGPNTGGKT+ LKT+GL +MA SGL I + E +++ FD+++A
Sbjct: 317 VPLDVELGNSYTSIIVTGPNTGGKTVTLKTIGLLNLMAMSGLFIPAEEGSQMCVFDAIYA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I+SQ T +SLVLLDE+GAGT+P EG+AL +S+LE
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIIRILSQMTPKSLVLLDEVGAGTDPAEGSALAISILEHI 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G + IATTH+ ELK Y NA MEFD L PTY++L GVPGRS+A IAE
Sbjct: 437 HRMGCRM-IATTHYSELKAYAYERKGVINASMEFDINTLSPTYRLLVGVPGRSNAFAIAE 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEH----VHEARHFLMLSRNLHK 680
RLGLPG +++ AR E+ E + Q +EH + E RH + R +
Sbjct: 496 RLGLPGSILEFAR-------GEVKE--------EDQRVEHMIASLEENRHTAEVEREKAE 540
Query: 681 NLLRTRRKILEHCASQRFRKVQKISD--------AAAIARSLVHKS 718
+ RK +E + +++QK+ + A A AR +V K+
Sbjct: 541 QV----RKEMEELRQRHQQELQKLEEQKDKLVDKARAEARQIVDKA 582
Score = 56.6 bits (135), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 153/304 (50%), Gaps = 22/304 (7%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLR-LLDETNAAIEMQK-HGS 111
L LE+ K+ ++++ + +TS+G +L + +T ++++ LL T+ A + + G+
Sbjct: 6 LHTLEYRKILNTLTQYTQTSMG---SLRAERLMPETDLEAVKDLLAATDQAYTVDRLKGN 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
S ++ + A++ R L P+E LA + S ++ + AAI ED + I
Sbjct: 63 PSFR----GITDINDALKRARIGGTLNPHELLATSNTIHGSRRIKRFI-AAIHEDEKIDI 117
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
F L+ +I + + L +I +DE + DSAS L Q R +++ E ++ + ++
Sbjct: 118 LF-NLSDLISE---QKPLEDAIRLCIDETAEVLDSASAELSQIRRELRGGEVRIREKLES 173
Query: 232 LIRNENNESLFLE-VSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLN 287
+IR+++ + + + +I G R I A+ S G ++ SG G+ IEP S V +N
Sbjct: 174 MIRSQSVAKMLQDQLITIRGDRFVIPVKAEYRSHFGGIVHDQSGSGATLFIEPESIVAMN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKM--QVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
++L++ R + E +L LT ++ Q +L I+ L G QLD + A+A + +
Sbjct: 234 NKLRETRMREEREIEVILQKLTAQVGEQAELLSIDVDLIG--QLDFIFAKARLAHVMKAS 291
Query: 346 SPNI 349
P +
Sbjct: 292 LPRM 295
>gi|148543773|ref|YP_001271143.1| MutS2 family protein [Lactobacillus reuteri DSM 20016]
gi|184153179|ref|YP_001841520.1| DNA mismatch repair protein [Lactobacillus reuteri JCM 1112]
gi|227363247|ref|ZP_03847379.1| MutS family DNA mismatch repair protein [Lactobacillus reuteri
MM2-3]
gi|325682145|ref|ZP_08161663.1| DNA mismatch repair protein MutS [Lactobacillus reuteri MM4-1A]
gi|148530807|gb|ABQ82806.1| MutS2 family protein [Lactobacillus reuteri DSM 20016]
gi|183224523|dbj|BAG25040.1| DNA mismatch repair protein [Lactobacillus reuteri JCM 1112]
gi|227071703|gb|EEI09994.1| MutS family DNA mismatch repair protein [Lactobacillus reuteri
MM2-3]
gi|324978789|gb|EGC15738.1| DNA mismatch repair protein MutS [Lactobacillus reuteri MM4-1A]
Length = 791
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 147/411 (35%), Positives = 220/411 (53%), Gaps = 50/411 (12%)
Query: 433 EMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG 485
E VS + HP V DI I + ++ITGPNTGGKTI LKT+G+ +M +SG
Sbjct: 298 ENHVSLRKARHPLIDPQRVVTNDIKIGEDYQAIIITGPNTGGKTITLKTLGIIQLMGQSG 357
Query: 486 LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIG 545
L I + E + + FD+VFADIGDEQSL Q+LSTFSGH+ + I+ Q TS+SLVLLDE+G
Sbjct: 358 LFIPAEEGSTIGIFDNVFADIGDEQSLEQNLSTFSGHMDGVKAILEQITSRSLVLLDELG 417
Query: 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKP 605
AGT+P EG AL M++L+ G+++ I TTH+ ELK Y NA MEFD+ LKP
Sbjct: 418 AGTDPKEGAALAMAILDNIGSKGTMVVI-TTHYPELKVYGYDRAKTINASMEFDQETLKP 476
Query: 606 TYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHV 665
TYK+L G+PGRS+ + IA+RLG+ V+ AR S ++N +I ++ + + E
Sbjct: 477 TYKLLLGIPGRSNGLEIAQRLGISLQVIDEARTFVSDNSQDLNNMIGDLVEQRKKAREES 536
Query: 666 HEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPS 725
+ + + + ++L + L QR + ++ ARS K+ Q+ +
Sbjct: 537 EKLAKLVAKNEKVQRDL----DEKLTRFNEQRDKLYEQ-------ARS---KANHQVSMA 582
Query: 726 ASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEH--PATASSSVV 783
+A ++H LR Q V +N+ + Q ++ + H P +SV+
Sbjct: 583 KKKADRIIH----HLRQLEVQ--QGGNVKENELIDA----QGQLNALHHDNPRLQHNSVL 632
Query: 784 KDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+ KQ + + GD V V S+G+ G E++ + GN KW
Sbjct: 633 QRAKQKHDLHK------GDAVLVKSYGQYG----------ELLSKRGNHKW 667
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 158/341 (46%), Gaps = 42/341 (12%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQT-YQDSLRLLDETNAAIEMQKHGSC 112
L LE+D++ ++ + ++ G LTQL + QT Y+ LL ET ++ +
Sbjct: 6 LETLEFDRIKGQLAQYLVSAAGHRE-LTQL--VPQTDYEAVKELLTETTDGADILR---L 59
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ L+ +K ++ ++ + L E + +LQ S +S++ + + I+
Sbjct: 60 EDGIPIPQLADIKPQLKRLKIKANLNGTELAQITKVLQTS----MSVKNFFDQMREKKIK 115
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
LT + +L S+ + +++ +D DG I D AS L R + E +++Q M+
Sbjct: 116 LRVLTTQVDRLVTIPSITQRLVRSIDSDGRINDEASAKLHGIRQLITQTETEIHQQMERY 175
Query: 233 IRNENNESLFLEVSSI-HGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
R +N + L + ++ + R I A + F G++ S+SG IEP + V N+
Sbjct: 176 TRGKNAKYLSDPIVTMRNDRYVIPVIARYRNKFGGVVHDQSASGQTLYIEPAAVVETNNR 235
Query: 290 LQQARASVTKAEEDVLLALTEKM---QVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
L+QA+ + + VL+ L++ + + D+ + E +L LD +NA+A ++
Sbjct: 236 LRQAQIEERQEMQRVLIELSQMIAPYRHDIGQNEAILG---HLDFINAKARWA------- 285
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
D K +L P+ SK E + L KA HPL+
Sbjct: 286 ------HDTKATL---PLLSK------ENHVSLRKARHPLI 311
>gi|206969500|ref|ZP_03230454.1| MutS2 family protein [Bacillus cereus AH1134]
gi|229072054|ref|ZP_04205263.1| hypothetical protein bcere0025_42200 [Bacillus cereus F65185]
gi|229081805|ref|ZP_04214297.1| hypothetical protein bcere0023_44330 [Bacillus cereus Rock4-2]
gi|229180871|ref|ZP_04308206.1| hypothetical protein bcere0005_42150 [Bacillus cereus 172560W]
gi|229192752|ref|ZP_04319710.1| hypothetical protein bcere0002_44030 [Bacillus cereus ATCC 10876]
gi|365158667|ref|ZP_09354859.1| MutS2 protein [Bacillus sp. 7_6_55CFAA_CT2]
gi|206735188|gb|EDZ52356.1| MutS2 family protein [Bacillus cereus AH1134]
gi|228590591|gb|EEK48452.1| hypothetical protein bcere0002_44030 [Bacillus cereus ATCC 10876]
gi|228602428|gb|EEK59914.1| hypothetical protein bcere0005_42150 [Bacillus cereus 172560W]
gi|228701393|gb|EEL53887.1| hypothetical protein bcere0023_44330 [Bacillus cereus Rock4-2]
gi|228710988|gb|EEL62954.1| hypothetical protein bcere0025_42200 [Bacillus cereus F65185]
gi|363626540|gb|EHL77523.1| MutS2 protein [Bacillus sp. 7_6_55CFAA_CT2]
Length = 786
Score = 215 bits (548), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEDRDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S +++ I++ AD +
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSR----NMKRFIEDMADNGV 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 115 ELPILETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEVERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|402570749|ref|YP_006620092.1| MutS2 family protein [Desulfosporosinus meridiei DSM 13257]
gi|402251946|gb|AFQ42221.1| MutS2 family protein [Desulfosporosinus meridiei DSM 13257]
Length = 787
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 138/414 (33%), Positives = 214/414 (51%), Gaps = 39/414 (9%)
Query: 435 QVSALELAHP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
Q+ ++ HP VP+ + + + LVITGPNTGGKT+ LK VGL M +SGL I
Sbjct: 300 QIKLVQARHPLISGRVVPLSLELGIEFDTLVITGPNTGGKTVALKVVGLMAAMNQSGLQI 359
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ +++ F +FADIGDEQS+ QSLSTFSGH+K I II +S +SLVLLDE+GAGT
Sbjct: 360 PAESDSRMGVFTQIFADIGDEQSVEQSLSTFSGHMKNIVEIIDRSDGRSLVLLDEVGAGT 419
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG AL M +L E G T++TTH+G LKT Y +NA +EFD L+PTY+
Sbjct: 420 DPTEGAALAMGILAELHERGC-RTVSTTHYGALKTFAYETPRVKNASVEFDTETLRPTYR 478
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
+L G+PG+S+A IA RLGL V++ A N + E E +E++ E
Sbjct: 479 LLIGIPGKSNAFTIAGRLGLSEEVLEKA-----------NTFVTEREMQVADLIENLGET 527
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS- 727
+ + K T R+ +E K ++ + I +L A ++ A
Sbjct: 528 HREI----EIEKQKAETGRQAVEKQTKALEEKSIRLDEELEILVALAKDEASEIIREAKR 583
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+A +++ + LR Q K + +++ Q + +K
Sbjct: 584 EAEAIIDELKAALRKENKQQQDIEKARQGFRKISAKLDQG----------------RQVK 627
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+S + +G V+++ +KG VIK+ S +E+++Q G MK ++ +++
Sbjct: 628 RSGSELSADQIMLGQTVYMTKLRQKGQVIKLPNSNDEVLIQAGIMKVMVPLSEL 681
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 10/246 (4%)
Query: 131 VRRASPLRPN-EALAVVALLQFSETLQL--SLRAAIKEDA---DLYIRFMPLTQMIMQLF 184
VR A +RP E ++ E L++ +LRA K DL +F L + + +
Sbjct: 67 VRGAKEIRPYIERCLRGGVIHGEELLEIRDTLRAGRKIKQLLQDLREQFPGLWDITLPIE 126
Query: 185 VNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE 244
+ L I + + EDG + D+A+P L R + L+ ++ + ++ +RN + + + +
Sbjct: 127 PQKPLEDEITRCISEDGKVADNATPELADFRRAINRLQNRIRESLEATLRNPSYQKILQD 186
Query: 245 --VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKA 300
++ R I + + SF G++ S+SG IEP+ V L +EL++ +
Sbjct: 187 PIITQRSDRYVIPVKQEYRASFPGIVHDQSASGATLFIEPMPVVHLGNELREVILKEQRE 246
Query: 301 EEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLT 360
+ +L L+ +++ DEI + + QLD+V A+A S+S +P + Q +K
Sbjct: 247 VQRILQMLSAQIEGRGDEIADLHEALAQLDLVIAKAHLSVSMNAGAPELVAGQQIKLVQA 306
Query: 361 HEPVTS 366
P+ S
Sbjct: 307 RHPLIS 312
>gi|228954821|ref|ZP_04116841.1| hypothetical protein bthur0006_41880 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229112016|ref|ZP_04241559.1| hypothetical protein bcere0018_42590 [Bacillus cereus Rock1-15]
gi|423426676|ref|ZP_17403707.1| MutS2 protein [Bacillus cereus BAG3X2-2]
gi|423437985|ref|ZP_17414966.1| MutS2 protein [Bacillus cereus BAG4X12-1]
gi|423502774|ref|ZP_17479366.1| MutS2 protein [Bacillus cereus HD73]
gi|449091504|ref|YP_007423945.1| hypothetical protein HD73_4846 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228671339|gb|EEL26640.1| hypothetical protein bcere0018_42590 [Bacillus cereus Rock1-15]
gi|228804810|gb|EEM51409.1| hypothetical protein bthur0006_41880 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|401110242|gb|EJQ18151.1| MutS2 protein [Bacillus cereus BAG3X2-2]
gi|401119598|gb|EJQ27409.1| MutS2 protein [Bacillus cereus BAG4X12-1]
gi|402460013|gb|EJV91741.1| MutS2 protein [Bacillus cereus HD73]
gi|449025261|gb|AGE80424.1| hypothetical protein HD73_4846 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 786
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEDRDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S +++ I++ AD +
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSR----NMKRFIEDMADNGV 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 115 ELPILETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|254724521|ref|ZP_05186304.1| recombination and DNA strand exchange inhibitor protein [Bacillus
anthracis str. A1055]
Length = 786
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSNRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|229158157|ref|ZP_04286225.1| hypothetical protein bcere0010_43350 [Bacillus cereus ATCC 4342]
gi|228625319|gb|EEK82078.1| hypothetical protein bcere0010_43350 [Bacillus cereus ATCC 4342]
Length = 786
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEDRDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LATHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|58336758|ref|YP_193343.1| mismatch repair protein [Lactobacillus acidophilus NCFM]
gi|227903319|ref|ZP_04021124.1| MutS family DNA mismatch repair protein [Lactobacillus acidophilus
ATCC 4796]
gi|75507643|sp|Q5FLW2.1|MUTS2_LACAC RecName: Full=MutS2 protein
gi|58254075|gb|AAV42312.1| mismatch repair protein [Lactobacillus acidophilus NCFM]
gi|227868948|gb|EEJ76369.1| MutS family DNA mismatch repair protein [Lactobacillus acidophilus
ATCC 4796]
Length = 785
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 192/681 (28%), Positives = 315/681 (46%), Gaps = 112/681 (16%)
Query: 165 EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
ED D + + ++ QL V L + + + +D DG + D+AS L + R + E
Sbjct: 107 EDVDEKVDLTIIDPILDQLDVPDLLFRELKKSIDYDGEVLDTASSELARLRHDIASNEED 166
Query: 225 LYQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPL 281
+ M + +++ L ++ +I R I + + F G++ S+SG +EP
Sbjct: 167 IKNRMTTYTKGNSSKYLSEQIVTIRDDRYVIPVKQEYRAKFGGVVHDQSASGQTLFVEPE 226
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ + LN+ Q A + ++L L+ + D+D + + + + LD + A+A
Sbjct: 227 AVLNLNNRQQNLIAKEKQEIRNILKHLSNIAREDIDSLNNIASALTSLDFLQAKAK---- 282
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKD 401
L ++MK S EP +K + ++ L A HPL+
Sbjct: 283 ---------LAKEMKAS---EPKLTK------DHSLNLRNARHPLI-------------- 310
Query: 402 LESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVIT 461
+P ++ VP +I + ++IT
Sbjct: 311 ----------------------------NPEKV----------VPNNIRLGGDFDTMLIT 332
Query: 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521
GPNTGGKTI LKT GL +MA+SGL I + E ++V F+ ++ADIGDEQS+ QSLSTFS
Sbjct: 333 GPNTGGKTITLKTAGLLQLMAQSGLFIPAEEDSQVGVFEQIYADIGDEQSIEQSLSTFSS 392
Query: 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581
H+ I I+ S++LVL+DEIGAGT+P EG +L +S+L+ F + TTH+ EL
Sbjct: 393 HMNDIIAIMKNVNSETLVLIDEIGAGTDPEEGASLAISILD-FLRKKDAKIMVTTHYPEL 451
Query: 582 KTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641
K Y+ NA MEFD L PTY++ G+PG S+A IA RLG+ VV+NA++L
Sbjct: 452 KLYGYNRPRTTNASMEFDLKTLSPTYRLQIGIPGHSNAFAIARRLGMREDVVKNAQELMS 511
Query: 642 AASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
++IN++I ++ N T R LE + +
Sbjct: 512 DEDSDINKMIAKL----------------------NAQTKAATTARNRLETSLDRSQKLE 549
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG-KNQHVL 760
QK+ A V K QL + +A ++ KR ++ Q VG K ++
Sbjct: 550 QKLQQALDWYNQRVQK---QLDFAQERANEIIAKRRKKADKIIEQLEQQKNVGIKENKII 606
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
+ + ++++ + A + V++ R KR ++GD V V S+G+ GT+ K +
Sbjct: 607 EAKGELNSLER-QANNLAHNKVLQ------REKRRHHVSIGDRVKVLSYGQTGTITK-QL 658
Query: 821 SKEEIVVQVGNMKWIMKFTDI 841
S+ E VQ+G +K + D+
Sbjct: 659 SEHEYEVQMGIIKVKVSDRDV 679
>gi|423640379|ref|ZP_17615997.1| MutS2 protein [Bacillus cereus VD166]
gi|401281295|gb|EJR87208.1| MutS2 protein [Bacillus cereus VD166]
Length = 786
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAETLRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEDRDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S +++ I++ AD +
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSR----NMKRFIEDMADNGV 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 115 ELPILETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|423449119|ref|ZP_17425998.1| MutS2 protein [Bacillus cereus BAG5O-1]
gi|401128568|gb|EJQ36257.1| MutS2 protein [Bacillus cereus BAG5O-1]
Length = 786
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 220/398 (55%), Gaps = 41/398 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E ++ K QK + +++ + +A ++H+ +QLR
Sbjct: 555 -QRQIIEFNEERDEKLLKAQK-------------EGEEKVEAAKKEAEGIIHE-LRQLRK 599
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
+ L + ++ A+ +VK KQ VK T +
Sbjct: 600 AQ---------------LVNVKDHELIEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMK 837
GD V V +FG+KG +++ + S E VQ+G +K +K
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVK 679
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + L D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVELQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ V+S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDVRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRNQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|333896863|ref|YP_004470737.1| MutS2 protein [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112128|gb|AEF17065.1| MutS2 protein [Thermoanaerobacterium xylanolyticum LX-11]
Length = 786
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 119/272 (43%), Positives = 166/272 (61%), Gaps = 9/272 (3%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI I + LVITGPNTGGKT+ LKTVGL +M+ SGL+I + E + V +FD++F
Sbjct: 314 VPISIHLGESFNTLVITGPNTGGKTVTLKTVGLLTLMSMSGLNIPADEGSDVAFFDNIFV 373
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I++ TS SLVLLDE+GAGT+P EG AL MS+L+ F
Sbjct: 374 DIGDEQSIEQSLSTFSAHMTNIVKILNNVTSNSLVLLDELGAGTDPTEGAALAMSILD-F 432
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ TIATTH+ ELK N+ ENA +EFD LKPTY++ G+PG+S+A I++
Sbjct: 433 LHRMNCRTIATTHYSELKQYALKNEGVENASVEFDVETLKPTYRLTIGIPGKSNAFEISK 492
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVI-------IEMERFKTQFLEHVHEARHFLMLSRN 677
RLGL V+ NA+ + + +++ IE E K + ++
Sbjct: 493 RLGLNDDVIDNAKSYITSEELKFEDILKDLENKRIEAENAKEEIEALKNQVESLRQEYEK 552
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAA 709
K+ R R KI+E A ++ +K+ + + A A
Sbjct: 553 KIKDTEREREKIIEK-AREKAKKILENTKATA 583
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 148/297 (49%), Gaps = 15/297 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
+ LE+DK+ + + + + G+E L+ + + +L +++ N A+ + +G+
Sbjct: 6 FKNLEFDKIINQIVNLCDSEPGKELALS--IKPYENVEKALEEIEKVNEAVSFISSYGNI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
S +D L K+ I+ S L P + L++ L + +++ LR +E + LY+R
Sbjct: 64 SFAFKKLDEILAKAKIK-----SSLSPGQLLSLSRFLSLAGKVKVYLRNEKEESSFLYLR 118
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
+ M+L + L I + V + + D ASPALK+ R Q + K+ ++ +
Sbjct: 119 -----EYNMRLTNIKELYDKIDRAVMSEDELADDASPALKEIRRQKAQINNKIRDTLNSI 173
Query: 233 IRNENNESLFLEVSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDEL 290
I + E ++ +GR + + + +FKGL+ SSSG IEP++ V LN++L
Sbjct: 174 IASSPKELQDPIITIRNGRYVVPVKQEYRGTFKGLIHDQSSSGATLFIEPMAVVELNNDL 233
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+Q E +L LTE + +DEI + + + +LDV+ A+A YS+S T P
Sbjct: 234 RQLEIKEQHEVERILAELTEDVGKHVDEINENMVVLKELDVIFAKAKYSISTDSTKP 290
>gi|301056059|ref|YP_003794270.1| MutS family DNA mismatch repair protein [Bacillus cereus biovar
anthracis str. CI]
gi|423549710|ref|ZP_17526037.1| MutS2 protein [Bacillus cereus ISP3191]
gi|300378228|gb|ADK07132.1| DNA mismatch repair protein, MutS family [Bacillus cereus biovar
anthracis str. CI]
gi|401190506|gb|EJQ97548.1| MutS2 protein [Bacillus cereus ISP3191]
Length = 786
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEIVANLDFIFAKAFYAKRIKATKP 294
>gi|118479701|ref|YP_896852.1| recombination and DNA strand exchange inhibitor protein [Bacillus
thuringiensis str. Al Hakam]
gi|196044939|ref|ZP_03112173.1| MutS2 family protein [Bacillus cereus 03BB108]
gi|225866525|ref|YP_002751903.1| MutS2 family protein [Bacillus cereus 03BB102]
gi|229186805|ref|ZP_04313960.1| hypothetical protein bcere0004_43460 [Bacillus cereus BGSC 6E1]
gi|229198701|ref|ZP_04325400.1| hypothetical protein bcere0001_42260 [Bacillus cereus m1293]
gi|376268476|ref|YP_005121188.1| Recombination inhibitory protein MutS2 [Bacillus cereus F837/76]
gi|423573771|ref|ZP_17549890.1| MutS2 protein [Bacillus cereus MSX-D12]
gi|189030425|sp|A0RJF2.1|MUTS2_BACAH RecName: Full=MutS2 protein
gi|254766189|sp|C1ETZ0.1|MUTS2_BACC3 RecName: Full=MutS2 protein
gi|118418926|gb|ABK87345.1| DNA mismatch repair protein, MutS family [Bacillus thuringiensis
str. Al Hakam]
gi|196024427|gb|EDX63100.1| MutS2 family protein [Bacillus cereus 03BB108]
gi|225787320|gb|ACO27537.1| MutS2 family protein [Bacillus cereus 03BB102]
gi|228584777|gb|EEK42896.1| hypothetical protein bcere0001_42260 [Bacillus cereus m1293]
gi|228596542|gb|EEK54207.1| hypothetical protein bcere0004_43460 [Bacillus cereus BGSC 6E1]
gi|364514276|gb|AEW57675.1| Recombination inhibitory protein MutS2 [Bacillus cereus F837/76]
gi|401213523|gb|EJR20263.1| MutS2 protein [Bacillus cereus MSX-D12]
Length = 786
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|323485118|ref|ZP_08090470.1| hypothetical protein HMPREF9474_02221 [Clostridium symbiosum
WAL-14163]
gi|323401548|gb|EGA93894.1| hypothetical protein HMPREF9474_02221 [Clostridium symbiosum
WAL-14163]
Length = 800
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 145/412 (35%), Positives = 221/412 (53%), Gaps = 60/412 (14%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI+I++ + +L++TGPNTGGKT+ LKTVGL +M ++GLHI + + +++ F+ VFA
Sbjct: 315 VPINIYLGDQFDLLIVTGPNTGGKTVSLKTVGLFTLMGQAGLHIPAFDGSELAVFEEVFA 374
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ Q+ S SL L DE+GAGT+P EG AL +++L +F
Sbjct: 375 DIGDEQSIEQSLSTFSAHMTNIVSILEQADSNSLCLFDELGAGTDPTEGAALAIAVL-SF 433
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S T+ATTH+ ELK + ENAC EF L+PTY++L G+PG+S+A I++
Sbjct: 434 LHNMSCRTMATTHYSELKVYALTTPGVENACCEFSLETLRPTYRLLIGIPGKSNAFAISK 493
Query: 625 RLGLPGIVVQNARQLYGA---------ASAEINEVIIEMERFK-TQFLEHVHEARHFLML 674
+LGLP ++++A++ A E N V IE ER + + E V +L
Sbjct: 494 KLGLPDYIIEDAKKHIEQEDESFEDLLADLEDNRVTIEKERAEIASYKEQVA------IL 547
Query: 675 SRNLHKNLLR---TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARS 731
R L + R + K+LE + R +Q D A +++ A++ S
Sbjct: 548 KRRLEQKEERFSEQKDKMLEKAREEAQRILQDAKDTADQTIRSINRLAKE---------S 598
Query: 732 LVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDK--VEHPATASSSVVKDIKQS 789
V+K + R L + VDK PA +V S
Sbjct: 599 GVNKELEAERSKLRNKL------------------SDVDKKLAVKPAVPKKAV------S 634
Query: 790 PRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
P+ R +GD V V S KGTV + +K ++ VQ+G ++ ++ D+
Sbjct: 635 PKSLR-----LGDTVRVLSMNLKGTVSSLPNAKGDLYVQMGILRSLVNIKDL 681
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 149/307 (48%), Gaps = 30/307 (9%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDET-NAAIEMQKHG 110
++L+ LE++K+ + +A T +G+ TL + + + ++ R ET +AA ++ G
Sbjct: 4 KALKTLEYNKIIAQLEEYASTQIGK--TLCRELVPSCSLEEIRRNQTETTDAATRVRMKG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR---AAIKEDA 167
S L GV V+ +++ + S L E LAV +LL + + R + + +D+
Sbjct: 62 S--LSFGGV--KDVRGSLKRLEIGSSLNIIELLAVSSLLTVTARAKAYGRREESELPDDS 117
Query: 168 --DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
+++ PLT VN + + I + ED + D ASP L + R ++++ ++
Sbjct: 118 LDEMFRTLEPLTP------VNTEIKRCI---ISED-DVSDDASPGLSKVRKSMKIIAGRV 167
Query: 226 YQLMDMLIRNENNESLFLEVSSI---HGRLCIRTGADQLSFKGLLLSSSSGIGSVI--EP 280
+ ++ ++ N+ +L+ + I GR C+ ++ + ++ S GS I EP
Sbjct: 168 HTQLNSVL---NSSRAYLQEAVITMRDGRYCLPVKSEYKNQVPGMVHDQSSTGSTIFIEP 224
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
++ V LN+EL++ + E VL AL+ ++ D I L + +LD + A+A S
Sbjct: 225 MAVVKLNNELRELEIQEKREIEFVLTALSGELVPYTDTIALNLELLAKLDFIFAKAALSR 284
Query: 341 SFGGTSP 347
F T P
Sbjct: 285 HFNCTEP 291
>gi|116626746|ref|YP_828902.1| Smr protein/MutS2 [Candidatus Solibacter usitatus Ellin6076]
gi|116229908|gb|ABJ88617.1| Smr protein/MutS2 [Candidatus Solibacter usitatus Ellin6076]
Length = 796
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 193/703 (27%), Positives = 324/703 (46%), Gaps = 115/703 (16%)
Query: 108 KHGSCSLDLTGVDLSLVKSAIREVR-RASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
+ G+ ++ G+ V+S I+++ + L P E + +LL + + +L AA +
Sbjct: 62 RGGAVRIEFGGI--PDVESPIQKLHIEGAGLEPKEIFQIFSLLDIAADAKSNLTAAAE-- 117
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
RF L + + R+L++ + + DGS+ D+AS AL + R ++ ++ +
Sbjct: 118 -----RFPILARRAATIGEFRTLLRELDGKILPDGSVADNASVALARLRRDIERQKKSIQ 172
Query: 227 QLMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQL-SFKGLLL-SSSSGIGSVIEPLS 282
++ +R+ + + E V+ + R + A Q G++ +S+SG +EPL
Sbjct: 173 SSLERFLRSHREDGVLQEEFVTIRNERFVVPVIAGQRRKLDGVIHGTSASGHTLFVEPLE 232
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
+ LN+EL + + VL+ +T++++ D I + L + +L++V +A ++ F
Sbjct: 233 TIDLNNELVRLTEEEMREVHRVLVEMTDRLRQYGDSIRQTLTTMAELELVFGKARFASDF 292
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
P ER +YL +A HPLL
Sbjct: 293 DCVIPRF---------------------GER---LYLKEARHPLL--------------- 313
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
A+ RRRK+ VPI + + + R L+I+G
Sbjct: 314 --ADVLRRRRKV-----------------------------AVPISMELTQDRRTLLISG 342
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKT+ LKTVGL +MA+S L + + E A++P F+ V ADIGD QS+ ++LSTFS H
Sbjct: 343 PNTGGKTVTLKTVGLLSLMAQSALPVPALE-AELPLFEQVLADIGDYQSIQENLSTFSAH 401
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
+ I + T SLVLLDE+GA T+P EG ALG++L+E F +G+ T+ +TH LK
Sbjct: 402 VSNIREMALDVTPDSLVLLDELGAATDPEEGGALGVALVEHFRSAGA-FTLVSTHLMALK 460
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642
+ + N M FDE +PTY + G+PG+S+ + IA RLG+P +++ AR
Sbjct: 461 IYGAATEGVVNGSMGFDEQTFEPTYHLQLGLPGKSAGLEIATRLGMPDDIMRRARL---- 516
Query: 643 ASAEINEVIIEMERFKTQFLEHV-HEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKV 701
+ + ER T+FL + H L L + + R+ E A R+
Sbjct: 517 -------SMSDRERDVTRFLSELHHRIEETQALEVTLREKIAELSRREKEIAAEWEKRET 569
Query: 702 QKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLT 761
KI + L ++ Q L QA+ + + AQ + +V K + L
Sbjct: 570 AKI-------KELERRTDQALAKFEEQAQDAIGRIAQGGDRRKADQDALRRVAKTKRELR 622
Query: 762 SNFQQTTV--------DKVEHPATASSSVV--KDIKQSPRVKR 794
+FQ T + D++ S V KD+++ RV+R
Sbjct: 623 EDFQTTVLSTQDDSRQDRIVPLRIEEGSRVRLKDVREPARVRR 665
>gi|386583346|ref|YP_006079749.1| DNA mismatch repair protein [Streptococcus suis D9]
gi|353735492|gb|AER16501.1| DNA mismatch repair protein [Streptococcus suis D9]
Length = 777
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 151/223 (67%), Gaps = 5/223 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
+A PVP D++ + +VITGPNTGGKTI LKT+GL +MA+SGL IL+ + ++V F
Sbjct: 307 IAKPVPNDLYFGSQLTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I++++ SL+L DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHTVQILAEADQDSLILFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
L+ G + T+ATTH+ ELK ENA MEFD L+PTYK + GVPGRS+A
Sbjct: 427 LDDLRLRG-IKTMATTHYPELKAYGIETSGIENASMEFDTNSLRPTYKFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
IA RLGL I++Q+A Q + +++N +I E+ ++Q +E
Sbjct: 486 EIARRLGLSDIIIQSA-QFWTDTDSDVNRII---EKLESQTVE 524
>gi|421871064|ref|ZP_16302686.1| mutS2 family protein [Brevibacillus laterosporus GI-9]
gi|372459691|emb|CCF12235.1| mutS2 family protein [Brevibacillus laterosporus GI-9]
Length = 785
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 143/397 (36%), Positives = 215/397 (54%), Gaps = 32/397 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+D+ + + +V+TGPNTGGKT+ +KT+GL +M +GLHI + E ++ F S+FA
Sbjct: 317 VPLDVELGKGYTGIVVTGPNTGGKTVSIKTLGLLSLMTMAGLHIPAQEETEMAVFSSIFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS HL I I+ Q +SLVL DE+GAGT+P EG AL MS+L+
Sbjct: 377 DIGDEQSIEQSLSTFSSHLTNIIRILDQMDEKSLVLFDELGAGTDPTEGAALAMSILDHV 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ L +ATTH+ ELK Y NA +EFD L+PTY++L GVPGRS+A IA
Sbjct: 437 LAKGARL-VATTHYSELKAYAYDTPEVVNASVEFDVQTLRPTYRLLVGVPGRSNAFAIAS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL ++ AR+ ++ ++I +E K + +A + R + L +
Sbjct: 496 RLGLNEQIIDKARRSVSKEENQVEKMIASLESNKKTAEKEREDAENI----RKQAEELRQ 551
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+ A + R ++K + A +A L + A+ + R L R + +
Sbjct: 552 QLEEERRQFAEAKNRLLEKAEEEARVAVQLASEEAEVII------RELRQMRKEGVDFKE 605
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
+ + K L + + +KV+ PA A V+ T++ +GD V
Sbjct: 606 HRLIDAKK------RLGNAVLELEKEKVKKPAKA-------------VRATQI-KIGDEV 645
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V SFG+KGTV+ + S E +VQ+G +K +K D+
Sbjct: 646 MVDSFGQKGTVLD-KVSSTEYLVQLGIIKMKVKKDDM 681
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 152/346 (43%), Gaps = 52/346 (15%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
LR LE++K+ + + LGRE +SL + +A Q+ +
Sbjct: 6 LRTLEFNKIIAMLMEKTTSELGRELA------------ESLEPFNHIDAVRHAQRQTEEA 53
Query: 114 LDLTGVDLSLVKSAIREVRRASPL---RPNEALAVVALLQFSETLQLSLR-----AAIKE 165
+ V S+ IR +R P+ R N LA + LL + TL R I E
Sbjct: 54 STVLRVKGSVPLGGIRNIR--GPIQRARLNSILAPLELLDIATTLHAGRRLKQFITDISE 111
Query: 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
+ +L I L ++ ++ R L I + +D++G + DSAS L+Q R +++ E ++
Sbjct: 112 EHELSI----LQSLVDRIEGLRDLETEIKRCIDDNGEVVDSASLELRQIRQEIRSSEARI 167
Query: 226 YQLMDMLIRNENNESLFLE-VSSIHG-RLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPL 281
+ +D + R+ + + + +E + +I G R I + S F G++ S+SG IEP
Sbjct: 168 REKLDQMTRSSSTQKMLMENIVTIRGDRFVIPVKQEYRSHFGGIVHDQSASGATLFIEPE 227
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
V +N++L++AR E +L LT + ++ + + L+ + +LD + A+A + S
Sbjct: 228 VIVSMNNKLREARLKEEHEVERILYTLTVLVADHVEMLLENLSVLAELDFIFAKAQLAYS 287
Query: 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
SP + E I L K HPL+
Sbjct: 288 MKAISPKL----------------------NEEGYILLKKGRHPLI 311
>gi|49478686|ref|YP_038600.1| recombination and DNA strand exchange inhibitor protein [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|81696639|sp|Q6HCX6.1|MUTS2_BACHK RecName: Full=MutS2 protein
gi|49330242|gb|AAT60888.1| DNA mismatch repair protein, MutS family [Bacillus thuringiensis
serovar konkukian str. 97-27]
Length = 786
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 145/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N++ + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNSQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|228917190|ref|ZP_04080747.1| hypothetical protein bthur0012_44020 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228935862|ref|ZP_04098672.1| hypothetical protein bthur0009_43070 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228823630|gb|EEM69452.1| hypothetical protein bthur0009_43070 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228842391|gb|EEM87482.1| hypothetical protein bthur0012_44020 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 786
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|52140954|ref|YP_085875.1| recombination and DNA strand exchange inhibitor protein [Bacillus
cereus E33L]
gi|196042123|ref|ZP_03109407.1| MutS2 family protein [Bacillus cereus NVH0597-99]
gi|228948276|ref|ZP_04110559.1| hypothetical protein bthur0007_44020 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229124117|ref|ZP_04253309.1| hypothetical protein bcere0016_44020 [Bacillus cereus 95/8201]
gi|81685978|sp|Q633P2.1|MUTS2_BACCZ RecName: Full=MutS2 protein
gi|51974423|gb|AAU15973.1| DNA mismatch repair protein, MutS family [Bacillus cereus E33L]
gi|196027059|gb|EDX65682.1| MutS2 family protein [Bacillus cereus NVH0597-99]
gi|228659419|gb|EEL15067.1| hypothetical protein bcere0016_44020 [Bacillus cereus 95/8201]
gi|228811263|gb|EEM57601.1| hypothetical protein bthur0007_44020 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 786
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|417986118|ref|ZP_12626693.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
32G]
gi|410526874|gb|EKQ01752.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
32G]
Length = 786
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 224/396 (56%), Gaps = 49/396 (12%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI + K + +VITGPNTGGKTI LKT+GL +M +SGL I + + +++ FD VFADIG
Sbjct: 319 DIPLGDKYQAMVITGPNTGGKTITLKTLGLLQLMGQSGLFIPADDESRIGIFDEVFADIG 378
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ Q+LSTFS H+ I +I+ Q + SLVL DE+GAGT+P EG AL +++L+A E
Sbjct: 379 DEQSIEQNLSTFSAHMDNIVHILKQLSQNSLVLFDELGAGTDPQEGAALAIAILDAVGEV 438
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L+PTY++L GVPGRS+A +I+ RLG
Sbjct: 439 GAYV-VATTHYPELKLYGYNTAKTINASMEFDSKTLQPTYRLLVGVPGRSNAFDISARLG 497
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
LPG +V+ A+ + + S E+N +I ++E+ + AR L ++++H L +
Sbjct: 498 LPGAIVERAKSMISSDSHELNNMISDLEKQRKAAETAYEAARRQLADAQSVHDELAAAYK 557
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
K ++R ++Q+ D A SLV K A++ K +QLR
Sbjct: 558 KF----TTERDAQLQQAKDKA---NSLVDK-----------AQTKADKIIKQLR-----Q 594
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP---------RVKRTELP 798
+ T G TV E+ A+ + +K + Q R + +
Sbjct: 595 MQLTNPG-------------TVK--ENQLIAAKTALKQLHQDEPLQKNRILRREREKQAL 639
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+VGD V V+S+ + GT+++ + K+ VQ+G +K
Sbjct: 640 HVGDEVKVASYDQTGTLLE-QFDKKHWQVQLGILKM 674
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 127/304 (41%), Gaps = 27/304 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSL---RLLDETNAAIEMQKHG 110
L+ LE+DK+ ++ T+ GR QL Q D + + LDET G
Sbjct: 6 LKTLEYDKIQQALLGQVVTANGR-----QLVQAMQPLTDPVAVQQALDET-------ADG 53
Query: 111 SCSLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
+ +L L G L + A++ V + L E ++ +LQ + L D
Sbjct: 54 ASALRLKGGIPVPQLENIDPALKRVDIGAVLNGQELASISRVLQTVSAIDKFL-----TD 108
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
I F L + L V L + + VD DG++ D ASP L R Q++ +E ++
Sbjct: 109 LQDQIDFRQLYTLQESLTVLPQLSRRLKTAVDPDGTLTDEASPQLHGFREQIKSIEGEIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIH-GRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSA 283
M R ++ L + +I R I A+ + G ++ S G IEP +
Sbjct: 169 GKMTNYTRGAQSKYLSDPIVTIRDDRYVIPVKAEYRAKFGGVVHDQSATGQTLFIEPQAI 228
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+ L++A+ + +L L+ ++ +I+ + D +NA+A + +
Sbjct: 229 VALNNRLREAQLAEVAEINRILAELSNELAPYTGQIKANAAVLGHFDFINAKARLAKAEK 288
Query: 344 GTSP 347
T P
Sbjct: 289 ATEP 292
>gi|196034369|ref|ZP_03101778.1| MutS2 family protein [Bacillus cereus W]
gi|218905777|ref|YP_002453611.1| recombination and DNA strand exchange inhibitor protein [Bacillus
cereus AH820]
gi|228929599|ref|ZP_04092617.1| hypothetical protein bthur0010_42830 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|226723044|sp|B7JR57.1|MUTS2_BACC0 RecName: Full=MutS2 protein
gi|195992911|gb|EDX56870.1| MutS2 family protein [Bacillus cereus W]
gi|218535887|gb|ACK88285.1| MutS2 family protein [Bacillus cereus AH820]
gi|228829986|gb|EEM75605.1| hypothetical protein bthur0010_42830 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 786
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTSPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|225376458|ref|ZP_03753679.1| hypothetical protein ROSEINA2194_02100 [Roseburia inulinivorans DSM
16841]
gi|225211834|gb|EEG94188.1| hypothetical protein ROSEINA2194_02100 [Roseburia inulinivorans DSM
16841]
Length = 523
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/407 (33%), Positives = 216/407 (53%), Gaps = 47/407 (11%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + R ++L++TGPNTGGKT+ LKTVGL +M +SGLHI +SE +++ F+ VFA
Sbjct: 46 VPIDVMLGRDFKLLIVTGPNTGGKTVSLKTVGLLTLMGQSGLHIPASERSELGIFEEVFA 105
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I+ + +SLVL DE+ AGT+P EG AL +S+L
Sbjct: 106 DIGDEQSIEQSLSTFSSHMTNIIRILKKVNDRSLVLFDELCAGTDPTEGAALAISILSRL 165
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ T+ATTH+ ELK S ENAC EF+ L PTY++L G+PG+S+A I+E
Sbjct: 166 HLYGAR-TMATTHYSELKVFALSTPDVENACCEFNVETLSPTYRLLIGIPGKSNAFAISE 224
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
+LGL ++++A+ +++ ++E+ + + E + ++L + L +
Sbjct: 225 KLGLSKDLIEDAKTRISENDENFEDLLADLEKSRVTIEKEQAEINRYKQEIQSLKERLEQ 284
Query: 685 -------TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
+R KIL + FR +++ D A +K + P S + K
Sbjct: 285 KQEKLDASRDKILRDANEEAFRILKEAKDVADETIRNFNKYGKANAP-----MSEMEKER 339
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQS--PRVKRT 795
+LR DK+ AS + D K++ P K
Sbjct: 340 TRLR----------------------------DKM----NASQKKLADQKKNAVPNHKVP 367
Query: 796 ELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
+ +GD V V S KGTV + +K ++ VQ+G ++ ++ D++
Sbjct: 368 KKLQIGDTVKVISMNLKGTVHTLPNAKGDLYVQMGILRSLVNINDLI 414
>gi|229175259|ref|ZP_04302774.1| hypothetical protein bcere0006_43390 [Bacillus cereus MM3]
gi|228608091|gb|EEK65398.1| hypothetical protein bcere0006_43390 [Bacillus cereus MM3]
Length = 786
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 143/400 (35%), Positives = 220/400 (55%), Gaps = 37/400 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREKVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVINQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+R+I+E +R K+ K K ++ +A + + + +QLR +
Sbjct: 555 -QRQIIEFN-DERDEKLLK-----------AQKEGEEKVEAAKKEAEGIIRELRQLRKAQ 601
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPNVG 801
L + ++ A+ +VK KQ VK T + G
Sbjct: 602 ---------------LINVKDHELIEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLRAG 644
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
D V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 645 DEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIISLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|82750751|ref|YP_416492.1| recombination and DNA strand exchange inhibitor protein
[Staphylococcus aureus RF122]
gi|123549011|sp|Q2YXD1.1|MUTS2_STAAB RecName: Full=MutS2 protein
gi|82656282|emb|CAI80696.1| DNA mismatch repair protein [Staphylococcus aureus RF122]
Length = 782
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/384 (34%), Positives = 216/384 (56%), Gaps = 34/384 (8%)
Query: 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLS 517
++ITGPNTGGKT+ LKT+GL ++MA+SGL I + + +++ F +V+ DIGDEQS+ QSLS
Sbjct: 332 VIITGPNTGGKTVTLKTLGLIIIMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLS 391
Query: 518 TFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
TFS H+ I I+ + SLVL DE+GAGT+P EG AL MS+L+ + GSL+ +ATTH
Sbjct: 392 TFSSHMTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLV-MATTH 450
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637
+ ELK + + NA +EFD L PTYK+L GVPGRS+A +I+++LGL ++ A+
Sbjct: 451 YPELKAYSCNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAK 510
Query: 638 QLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQR 697
+ G EINE+I +ER + E + + +H +L + Q+
Sbjct: 511 TMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLSK---------QYQQ 561
Query: 698 FRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ 757
F+ +K ++ K+ Q++ + +A ++ K +QLR + ++ +
Sbjct: 562 FQNYEK-----SLIEEAKEKANQKIKAATKEADDII-KDLRQLREQKGADVKEHELIDKK 615
Query: 758 HVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
L +++ K IKQ+ + ++ + GD V V S+G+KG V++
Sbjct: 616 KRLDDHYE-----------------AKSIKQNVQKQKYDKIVAGDEVKVLSYGQKGEVLE 658
Query: 818 VEPSKEEIVVQVGNMKWIMKFTDI 841
+ + EE +VQ+G +K + D+
Sbjct: 659 I-VNDEEAIVQMGIIKMKLPIEDL 681
>gi|430749370|ref|YP_007212278.1| MutS2 family protein [Thermobacillus composti KWC4]
gi|430733335|gb|AGA57280.1| MutS2 family protein [Thermobacillus composti KWC4]
Length = 784
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/400 (34%), Positives = 214/400 (53%), Gaps = 39/400 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+D+ + ++ITGPNTGGKT+ LKT+GL +MA SGL + + + +++ FD+++A
Sbjct: 317 VPLDVELGNSYTAIIITGPNTGGKTVTLKTIGLLSLMAMSGLFVPADDGSQLCVFDAIYA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ Q+LSTFSGH+ I ++ + T +SLVLLDE+GAGT+P EG+AL +++LE
Sbjct: 377 DIGDEQSIEQNLSTFSGHMTNIIRMLREMTPKSLVLLDELGAGTDPAEGSALAIAILEHI 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G + +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A IAE
Sbjct: 437 HRLGCRI-VATTHYSELKAYAYNRKGIINASMEFDVQTLSPTYRLLVGVPGRSNAFAIAE 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGLP +++ AR + ++I +E E R R ++L
Sbjct: 496 RLGLPRSIIERARGEVSEDDRRVEDMIASLE-----------EDRQSAEAERQTAESLRA 544
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
++ E A++ RK ++ D ++ K+ ++ + ++AR LR A
Sbjct: 545 EMERLKERHAAE-LRKFEQQRD------RMLAKAQEEAREAVAKARREAEAIIADLRRMA 597
Query: 745 SQSLHCTKVGKNQHVLTS---NFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVG 801
+ K +H L + D P +A + K ++ P G
Sbjct: 598 LEEAASVK----EHKLIEARRRLDEAIPDLTPKP-SAQGAARKPVRVEP----------G 642
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
D V V S +KG V+ E + E +VQ+G +K + +D+
Sbjct: 643 DEVTVISLNQKGVVL--ETGETEALVQIGILKMKVALSDL 680
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 146/302 (48%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL--LDETNAAIEMQKHGS 111
L +LE+ K+ + A TSLGR+ +L + + LRL DE +AA ++ G+
Sbjct: 6 LHILEYHKIIERLMEQAATSLGRD-LCGRLEPSSDLEEVKLRLQATDEASAAERLK--GA 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
++ V++A++ + L P E L + + + ++ + A I ED L +
Sbjct: 63 PPFG----GIADVRAALKRAKIGGKLNPAELLEIASTARGGRLVKRHI-AQIHEDHPLPL 117
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + QL +R+L +SI + +DE + D ASP L R +++ E ++ + ++
Sbjct: 118 ----LHGLAGQLTEHRALEESIARCIDEQAYVVDQASPELAAIRRELRGGEARIREKLEQ 173
Query: 232 LIRNENNESLFLE-VSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLN 287
L+R+ + + + + + +I G R I + G ++ SG G+ IEP S V +N
Sbjct: 174 LVRSPSVQKMLQDAIITIRGDRFVIPVKQEYRGHFGGIVHDQSGSGATLFIEPESIVQMN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
++L++ + + + E +LL LT + D++ L + QLD A++ + + P
Sbjct: 234 NKLRELKMAEEREIERILLRLTAETAEHADDLAANLELLGQLDFAFAKSRLAREMRASLP 293
Query: 348 NI 349
+
Sbjct: 294 RM 295
>gi|430743730|ref|YP_007202859.1| mismatch repair ATPase [Singulisphaera acidiphila DSM 18658]
gi|430015450|gb|AGA27164.1| mismatch repair ATPase (MutS family) [Singulisphaera acidiphila DSM
18658]
Length = 693
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 181/596 (30%), Positives = 292/596 (48%), Gaps = 72/596 (12%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
+L +LE+DK+ V+ A SLG+E + W + + +D + + EM + S
Sbjct: 5 TLELLEFDKVRALVAKRAACSLGKE----RAWRMEPS-RDPGEIRNRQALTTEMLEALSS 59
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQL--SLRAAIKEDADLY 170
L L ++ +R + + L E L Q ETL+ L + + +
Sbjct: 60 GLTPPFGGLHDIRPQVRRAQIGAMLDAEE------LAQAVETLRAIGHLNQWLSRIGEEF 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
R L Q + + ++ +I +D G++ D+AS L R ++ +E K+ + +
Sbjct: 114 PRLGGLKQEVGEF---SGVVNAIEGCLDSRGNVLDTASRKLSALRREIGQVEEKIQETLR 170
Query: 231 MLIR-NENNESLFLEVSSIHGRLCIRTGADQL--SFKGLLLSSSSGIGSV-IEPLSAVPL 286
++R NE L ++ G + A + +G + +S+ +V IEP +
Sbjct: 171 RMLRSNEIKRILRFPNFTMVGHHYVLPIAKEHRGEIQGSVHRTSASNETVYIEPQAIAEH 230
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
+ +L RA K +L L+ ++ + L + +LD+++AR YSL T
Sbjct: 231 SAQLSFIRAREAKEIRRILRWLSAQLGQVAESALGSLETLGELDLIHARGRYSLDGRMTP 290
Query: 347 PNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESAN 406
P+ E + L A HPLL +A+
Sbjct: 291 PDF----------------------NEEGKLALRGARHPLL---------EAF------- 312
Query: 407 TELRRRKLYGGNAARKGEKDTNLSPSEMQ------VSALELAHPVPIDIFIARKTRVLVI 460
G A + + +P+E V + E VPID+ + + + LV+
Sbjct: 313 -------FRGDTAPPRVPEPPREAPTEADESPPAIVGSQEPRTVVPIDVHLGLQFQTLVV 365
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKT+ +KTVGL +MA++GLHI + + +++P FD V ADIGDEQSL QSLSTFS
Sbjct: 366 TGPNTGGKTVAIKTVGLLAIMAQAGLHIPAHQGSQLPVFDEVLADIGDEQSLEQSLSTFS 425
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H++++ I+++++S+SLVLLDE+GAGT+P EG ALG ++L+ G+ I TTH G+
Sbjct: 426 SHVRRVTEILARASSKSLVLLDEMGAGTDPAEGAALGRAILDEIDSIGA-RAIVTTHLGD 484
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 636
LKT +SN ENA +EFD L+P Y++ G G+S+A+ IA RL LP +V A
Sbjct: 485 LKTYAFSNPRVENAAVEFDLETLRPRYRLHIGDIGQSNALQIARRLSLPEHIVARA 540
>gi|299535519|ref|ZP_07048840.1| MutS2 protein [Lysinibacillus fusiformis ZC1]
gi|424739203|ref|ZP_18167624.1| MutS2 protein [Lysinibacillus fusiformis ZB2]
gi|298728719|gb|EFI69273.1| MutS2 protein [Lysinibacillus fusiformis ZC1]
gi|422946841|gb|EKU41246.1| MutS2 protein [Lysinibacillus fusiformis ZB2]
Length = 788
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 148/415 (35%), Positives = 224/415 (53%), Gaps = 58/415 (13%)
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
L + +P DI + +VITGPNTGGKT+ LKTVGL +MA++GL + + + +++
Sbjct: 314 LPIDSAIPNDIEFGKDITAIVITGPNTGGKTVTLKTVGLCTLMAQAGLPVPALDGSELAV 373
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + +SLVL DE+GAGT+P EG AL +
Sbjct: 374 FEQLFADIGDEQSIEQSLSTFSSHMVNIVDILQKFDHESLVLFDELGAGTDPQEGAALAI 433
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
S+L+ G+ + +ATTH+ ELK Y+ NA +EFD L PTY++L GVPGRS+
Sbjct: 434 SILDEVHGRGARV-MATTHYPELKAYGYNRPGVANASVEFDIETLSPTYRLLIGVPGRSN 492
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A I+ RLGLP ++ A+ G E+ +I +E + Q + + L+ S L
Sbjct: 493 AFEISSRLGLPESIIDRAKGFTGTDRHEVESMIASLEETRRQSEDDAERSHALLLESETL 552
Query: 679 HKNL------LRTRRKILEHCASQRFRKV--QKISDAAAIARSL--VHKSAQQLCPSAS- 727
K L R++ L+ A ++ RK+ + +A AI L + K+A Q+
Sbjct: 553 RKELQDKLQAYEERKEALDKKAKEKARKIVDEAKREAEAIIAELREMRKNADQVVKEHEL 612
Query: 728 -QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+AR KR ++ P L KV +
Sbjct: 613 IEAR----KRLEEATP-----LEDNKV--------------------------------L 631
Query: 787 KQSPRVK-RTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTD 840
K++ +VK R + VGD V V S+G++GT+++ + S E VVQ+G +K MK +D
Sbjct: 632 KKAAQVKARAQNLVVGDEVKVLSYGQRGTLLE-KVSNTEWVVQMGILK--MKISD 683
Score = 61.2 bits (147), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 155/344 (45%), Gaps = 44/344 (12%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQT-YQDSLRLLDETNAAIEMQKHGS 111
+L+ LE+DK+ V+S+ +S+G+ A + +L + QT + ++LL+E + + + +
Sbjct: 6 ALKTLEYDKVRQQVASYCTSSIGKSA-IEEL--VPQTDFAKVVQLLEEMDEGLSILR--- 59
Query: 112 CSLDLTGVDLSLVKSAIREVR-RASPLRPNEALAVVALLQFSETLQLS--LRAAIKE-DA 167
V ++ I +VR A + LA V L++ S T++ S LR I++ +A
Sbjct: 60 -------VKGNVPMGGIFDVRPSARRAQIGGMLAAVELMEISSTIRASRILRNFIEDLEA 112
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
D I + V L I +D++G++ DSAS L+ R ++ E K+
Sbjct: 113 DEVIDIPHFISKKEAMPVLTGLQHEINNCIDDNGAVLDSASQTLRSIRQSLRAEEGKVRS 172
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSA 283
++ LIR N + + V+ + R I + G ++ SSSG IEP S
Sbjct: 173 KLESLIRGSNAAKMLSDTLVTIRNDRFVIPVKQEYRHHYGGIVHDQSSSGQTLFIEPDSV 232
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V N+E+ + + E +LLAL+ +Q ++ ++ + +DV+ A+ Y +
Sbjct: 233 VQANNEIHRLKMKEQAEIERILLALSAMVQEVASDLFNLVKVLGDIDVILAKGKYGQANK 292
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
T P + ++ I L +A HPLL
Sbjct: 293 CTMPKM----------------------NQDGYIRLIRARHPLL 314
>gi|323694011|ref|ZP_08108195.1| MutS2 family protein [Clostridium symbiosum WAL-14673]
gi|355625337|ref|ZP_09048200.1| MutS2 protein [Clostridium sp. 7_3_54FAA]
gi|323501947|gb|EGB17825.1| MutS2 family protein [Clostridium symbiosum WAL-14673]
gi|354821364|gb|EHF05752.1| MutS2 protein [Clostridium sp. 7_3_54FAA]
Length = 800
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 144/412 (34%), Positives = 221/412 (53%), Gaps = 60/412 (14%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI+I++ + +L++TGPNTGGKT+ LKTVGL +M ++GLHI + + +++ F+ VFA
Sbjct: 315 VPINIYLGDQFDLLIVTGPNTGGKTVSLKTVGLFTLMGQAGLHIPAFDGSELAVFEEVFA 374
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ Q+ S SL L DE+GAGT+P EG AL +++L +F
Sbjct: 375 DIGDEQSIEQSLSTFSAHMTNIVSILEQADSNSLCLFDELGAGTDPTEGAALAIAVL-SF 433
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S T+ATTH+ ELK + ENAC EF L+PTY++L G+PG+S+A I++
Sbjct: 434 LHNMSCRTMATTHYSELKVYALTTPGVENACCEFSLETLRPTYRLLIGIPGKSNAFAISK 493
Query: 625 RLGLPGIVVQNARQLYGA---------ASAEINEVIIEMERFK-TQFLEHVHEARHFLML 674
+LGLP ++++A++ A E N V IE ER + + E V +L
Sbjct: 494 KLGLPDYIIEDAKKHIEQEDESFEDLLADLEDNRVTIEKERAEIASYKEQVA------IL 547
Query: 675 SRNLHKNLLR---TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARS 731
R L + R + K+LE + R +Q D A +++ A++ S
Sbjct: 548 KRRLEQKEERFSEQKDKMLEKAREEAQRILQDAKDTADQTIRSINRLAKE---------S 598
Query: 732 LVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDK--VEHPATASSSVVKDIKQS 789
V+K + R L + +DK PA +V S
Sbjct: 599 GVNKELEAERSKLRNKL------------------SDIDKKLAVKPAVPKKAV------S 634
Query: 790 PRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
P+ R +GD V V S KGTV + +K ++ VQ+G ++ ++ D+
Sbjct: 635 PKSLR-----LGDTVRVLSMNLKGTVSSLPNAKGDLYVQMGILRSLVNIKDL 681
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 149/307 (48%), Gaps = 30/307 (9%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDET-NAAIEMQKHG 110
++L+ LE++K+ + +A T +G+ TL + + + ++ R ET +AA ++ G
Sbjct: 4 KALKTLEYNKIIAQLEEYASTQIGK--TLCRELVPSCSLEEIRRNQTETTDAATRVRMKG 61
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLR---AAIKEDA 167
S L GV V+ +++ + S L E LAV +LL + + R + + +D+
Sbjct: 62 S--LSFGGV--KDVRGSLKRLEIGSSLNIIELLAVSSLLTVTARAKAYGRREESELPDDS 117
Query: 168 --DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKL 225
+++ PLT VN + + I + ED + D ASP L + R ++++ ++
Sbjct: 118 LDEMFRTLEPLTP------VNTEIKRCI---ISED-DVSDDASPGLSKVRKSMKIIAGRV 167
Query: 226 YQLMDMLIRNENNESLFLEVSSI---HGRLCIRTGADQLSFKGLLLSSSSGIGSVI--EP 280
+ ++ ++ N+ +L+ + I GR C+ ++ + ++ S GS I EP
Sbjct: 168 HTQLNSVL---NSSRAYLQEAVITMRDGRYCLPVKSEYKNQVPGMVHDQSSTGSTIFIEP 224
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
++ V LN+EL++ + E VL AL+ ++ D I L + +LD + A+A S
Sbjct: 225 MAVVKLNNELRELEIQEKREIEFVLTALSGELVPYTDTIALNLELLAKLDFIFAKAALSR 284
Query: 341 SFGGTSP 347
F T P
Sbjct: 285 HFNCTEP 291
>gi|431546278|ref|ZP_19518903.1| MutS2 protein [Enterococcus faecium E1731]
gi|430591597|gb|ELB29626.1| MutS2 protein [Enterococcus faecium E1731]
Length = 786
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELNRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|294617527|ref|ZP_06697157.1| MutS2 family protein [Enterococcus faecium E1679]
gi|291596133|gb|EFF27396.1| MutS2 family protein [Enterococcus faecium E1679]
Length = 786
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 134/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEE-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELNRFIDDLYDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|430825904|ref|ZP_19444102.1| MutS2 protein [Enterococcus faecium E0164]
gi|430445612|gb|ELA55342.1| MutS2 protein [Enterococcus faecium E0164]
Length = 786
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 136/301 (45%), Gaps = 16/301 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRG-- 61
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLYI 171
G+ + +++ ++R + L V L Q S L + L I + +D I
Sbjct: 62 ----GIPIPKIENIRPHMKR---IEIGADLNGVELAQVSRVLSTTSELNRFIDDLSDSEI 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 115 EFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLDG 174
Query: 232 LIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
++R +N + L + ++ + R I + G ++ S+SG IEP V LN+
Sbjct: 175 IVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLNN 234
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 235 RLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVPG 294
Query: 349 I 349
I
Sbjct: 295 I 295
>gi|255526069|ref|ZP_05392992.1| MutS2 family protein [Clostridium carboxidivorans P7]
gi|296187117|ref|ZP_06855515.1| recombination and DNA strand exchange inhibitor protein
[Clostridium carboxidivorans P7]
gi|255510255|gb|EET86572.1| MutS2 family protein [Clostridium carboxidivorans P7]
gi|296048311|gb|EFG87747.1| recombination and DNA strand exchange inhibitor protein
[Clostridium carboxidivorans P7]
Length = 787
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 136/399 (34%), Positives = 213/399 (53%), Gaps = 33/399 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+D+++ + LVITGPNTGGKT+ LKTVGL +MA SGL I + E + V +F VFA
Sbjct: 315 VPLDVYLGKGFTSLVITGPNTGGKTVTLKTVGLLHIMALSGLMIPARENSTVSFFKEVFA 374
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I NII+++ +SLVL DE+GAGT+P EG AL +S+LE
Sbjct: 375 DIGDEQSIEQSLSTFSSHMTNIVNIINKADDESLVLFDELGAGTDPTEGAALAVSILENL 434
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G + +ATTH+ ELK + ENA +EFD L+PTY++L G+PG+S+A I+
Sbjct: 435 KSRGCRI-VATTHYSELKVYALKVNGVENASVEFDVETLRPTYRLLIGIPGKSNAFEISR 493
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL ++ +A++ + + + ++I +++ + + EA +L+
Sbjct: 494 RLGLADYIIHDAKENINSETLQFEDLIEDLQEKSVKAEANAREAE------------MLK 541
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
++ ++ +Q + A I + A+++ A + + K ++L +
Sbjct: 542 LEAAKIKDKYEEKMGSLQNAREKAVIN---AQREAKRIIKEAKEEADNILKEMRELEKAG 598
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV--GD 802
S K+ + + L DK++ + + R EL NV G+
Sbjct: 599 YASDVRHKLEEERRKLAQKL-----DKIDEK----------VNKVKRDDGEELKNVREGE 643
Query: 803 LVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V V S +K VI +K + VQ G MK +K D+
Sbjct: 644 EVFVPSLNQKVIVISKPDNKGNVQVQAGIMKIEVKLKDL 682
Score = 40.0 bits (92), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 141/301 (46%), Gaps = 16/301 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
+L+VLE+ K+ + ++ T ++ + +L + Y+ + + A + G+
Sbjct: 5 ALKVLEFYKIREQLKNYTSTGAAKD-LIEELKPYDNIYEVREHIQETKEAFKLLVTKGAP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ GV V+ I + S L P + L + A+L+ + Q + + KE+ + +
Sbjct: 64 PFE--GV--YDVREGISRAGKGSTLMPGQLLKIAAILRAARRFQEYI--SHKEEEEGFRV 117
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
++Q I+ L +++ I ++ + + D AS AL R ++ + ++ L
Sbjct: 118 LENISQGIIPL---KNIEDHIFMSIESEEQVSDRASTALYNIRKALKDKNSSVRDRVNSL 174
Query: 233 IRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDE 289
IR ++ L + ++ G R + A+ + + GL+ SSSG IEP+ V LN+E
Sbjct: 175 IRT-YSDYLQDNLYTMRGDRYVLPVRAEHKGAVPGLVHDQSSSGATLYIEPMGLVNLNNE 233
Query: 290 LQQARASVTKAEEDVLLA-LTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
+++ KAE D +LA L+ ++ + + + I +LD + A+A ++ T+P
Sbjct: 234 IKELMLK-EKAEVDRILAYLSNEIYGSIIAVRNDADIIWELDFIFAKAKFASELNCTAPK 292
Query: 349 I 349
+
Sbjct: 293 V 293
>gi|430946889|ref|ZP_19485669.1| MutS2 protein [Enterococcus faecium E1576]
gi|430558286|gb|ELA97705.1| MutS2 protein [Enterococcus faecium E1576]
Length = 786
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELNRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|390935290|ref|YP_006392795.1| MutS2 protein [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
gi|389570791|gb|AFK87196.1| MutS2 protein [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
Length = 786
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/266 (43%), Positives = 167/266 (62%), Gaps = 13/266 (4%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI + + + LVITGPNTGGKT+ LKTVGL +M+ SGL+I + + + V +FD+VF
Sbjct: 314 VPISVHLGQSFNTLVITGPNTGGKTVTLKTVGLLTLMSMSGLNIPADDGSDVAFFDNVFV 373
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I++ S SLVLLDE+GAGT+P EG AL MS+L+ F
Sbjct: 374 DIGDEQSIEQSLSTFSAHMTNIVKILNNVNSNSLVLLDELGAGTDPTEGAALAMSILD-F 432
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ TIATTH+ ELK N+ ENA +EFD LKPTY++ G+PG+S+A I++
Sbjct: 433 LHRMNCRTIATTHYSELKQYALKNEGVENASVEFDVETLKPTYRLTIGIPGKSNAFEISK 492
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKT------QFLEHVHEARHFLMLSRNL 678
RLGL +++NA+ + +++ ++E +T Q +E + RH L
Sbjct: 493 RLGLNDDIIENAKNYITSEELRFEDILRDLENKRTEAENAKQKIEELK--RHVESLKDEY 550
Query: 679 HKNLL---RTRRKILEHCASQRFRKV 701
K + R R KI+E A ++ +K+
Sbjct: 551 EKKVKEAEREREKIIEK-AREKAKKI 575
Score = 86.3 bits (212), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 147/297 (49%), Gaps = 15/297 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE-MQKHGSC 112
+ LE+DK+ + +S + G+EA L + +++L+ +++ N A+ + +G+
Sbjct: 6 FKNLEFDKIINRISDLCDSEPGKEAALD--IKPYENVEEALKEIEKVNEAVSFIVSYGNM 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
S +D L K+ I S L P + L++ L + ++ LR +E Y+R
Sbjct: 64 SFSFKKIDDILAKAKI-----GSSLNPGQLLSLSRFLSLAGKVKAYLRNEKEEGIFPYLR 118
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
+ M+L R L I + V + + D ASPALK+ R Q + K+ ++ +
Sbjct: 119 -----EYNMRLTNIRELYDKIDRTVISEDELADDASPALKEIRRQKAHINNKIRDTLNSI 173
Query: 233 IRNENNESLFLEVSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDEL 290
I + + E ++ +GR + + + +FKGL+ SSSG IEP++ V LN++L
Sbjct: 174 IASSSKELQDPIITIRNGRYVVPVKQEYRGTFKGLVHDQSSSGATLFIEPMAVVELNNDL 233
Query: 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+Q E +L LT+++ DEI + + + +LDV+ A+A YS++ T P
Sbjct: 234 RQLEIKEQHEIERILAELTDEVGEHADEIYENMVALKELDVIFAKAKYSINTDSTKP 290
>gi|427396578|ref|ZP_18889337.1| MutS2 protein [Enterococcus durans FB129-CNAB-4]
gi|431638661|ref|ZP_19523288.1| MutS2 protein [Enterococcus faecium E1904]
gi|447912185|ref|YP_007393597.1| Recombination inhibitory protein MutS2 [Enterococcus faecium NRRL
B-2354]
gi|425723248|gb|EKU86139.1| MutS2 protein [Enterococcus durans FB129-CNAB-4]
gi|430602140|gb|ELB39719.1| MutS2 protein [Enterococcus faecium E1904]
gi|445187894|gb|AGE29536.1| Recombination inhibitory protein MutS2 [Enterococcus faecium NRRL
B-2354]
Length = 786
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 134/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEE-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELNRFIDDLYDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|431514071|ref|ZP_19516119.1| MutS2 protein [Enterococcus faecium E1634]
gi|430586327|gb|ELB24588.1| MutS2 protein [Enterococcus faecium E1634]
Length = 786
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSATSELNRFINDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|430843631|ref|ZP_19461530.1| MutS2 protein [Enterococcus faecium E1050]
gi|430497490|gb|ELA73527.1| MutS2 protein [Enterococcus faecium E1050]
Length = 786
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 136/301 (45%), Gaps = 16/301 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRG-- 61
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLYI 171
G+ + +++ ++R + L V L Q S L + L I + +D I
Sbjct: 62 ----GIPIPKIENIRPHMKR---IEIGADLNGVELAQVSRVLSTTSELNRFIDDLSDSEI 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 115 EFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLDG 174
Query: 232 LIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
++R +N + L + ++ + R I + G ++ S+SG IEP V LN+
Sbjct: 175 IVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLNN 234
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 235 RLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVPG 294
Query: 349 I 349
I
Sbjct: 295 I 295
>gi|423389147|ref|ZP_17366373.1| MutS2 protein [Bacillus cereus BAG1X1-3]
gi|401642422|gb|EJS60133.1| MutS2 protein [Bacillus cereus BAG1X1-3]
Length = 786
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 221/400 (55%), Gaps = 37/400 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+R+I+E +R K+ K K ++ +A + + + +QLR +
Sbjct: 555 -QRQIIEFN-DERDEKLLK-----------AQKEGEEKVEAAKKEAEGIIQELRQLRKAQ 601
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPNVG 801
V H L ++ A+ +VK KQ VK T + G
Sbjct: 602 L-------VNVKDHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLRAG 644
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
D V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 645 DEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + L D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVELQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|257883965|ref|ZP_05663618.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,501]
gi|257819803|gb|EEV46951.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,501]
Length = 786
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELNRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|430860620|ref|ZP_19478219.1| MutS2 protein [Enterococcus faecium E1573]
gi|430552018|gb|ELA91768.1| MutS2 protein [Enterococcus faecium E1573]
Length = 786
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 136/301 (45%), Gaps = 16/301 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRG-- 61
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLYI 171
G+ + +++ ++R + L V L Q S L + L I + +D I
Sbjct: 62 ----GIPIPKIENIRPHMKR---IEIGADLNGVELAQVSRVLSTTSELNRFIDDLSDSEI 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 115 EFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLDG 174
Query: 232 LIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
++R +N + L + ++ + R I + G ++ S+SG IEP V LN+
Sbjct: 175 IVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLNN 234
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 235 RLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVPG 294
Query: 349 I 349
I
Sbjct: 295 I 295
>gi|293568794|ref|ZP_06680108.1| MutS2 family protein [Enterococcus faecium E1071]
gi|430819495|ref|ZP_19438147.1| MutS2 protein [Enterococcus faecium E0045]
gi|430834320|ref|ZP_19452327.1| MutS2 protein [Enterococcus faecium E0679]
gi|431149562|ref|ZP_19499420.1| MutS2 protein [Enterococcus faecium E1620]
gi|431230237|ref|ZP_19502440.1| MutS2 protein [Enterococcus faecium E1622]
gi|431301457|ref|ZP_19507776.1| MutS2 protein [Enterococcus faecium E1626]
gi|431764575|ref|ZP_19553112.1| MutS2 protein [Enterococcus faecium E4215]
gi|291588511|gb|EFF20345.1| MutS2 family protein [Enterococcus faecium E1071]
gi|430440567|gb|ELA50814.1| MutS2 protein [Enterococcus faecium E0045]
gi|430485551|gb|ELA62457.1| MutS2 protein [Enterococcus faecium E0679]
gi|430574223|gb|ELB13001.1| MutS2 protein [Enterococcus faecium E1622]
gi|430575451|gb|ELB14167.1| MutS2 protein [Enterococcus faecium E1620]
gi|430580647|gb|ELB19114.1| MutS2 protein [Enterococcus faecium E1626]
gi|430630715|gb|ELB67064.1| MutS2 protein [Enterococcus faecium E4215]
Length = 786
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 136/301 (45%), Gaps = 16/301 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRG-- 61
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLYI 171
G+ + +++ ++R + L V L Q S L + L I + +D I
Sbjct: 62 ----GIPIPKIENIRPHMKR---IEIGADLNGVELAQVSRVLSTTSELNRFIDDLSDSEI 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 115 EFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLDG 174
Query: 232 LIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
++R +N + L + ++ + R I + G ++ S+SG IEP V LN+
Sbjct: 175 IVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLNN 234
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 235 RLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVPG 294
Query: 349 I 349
I
Sbjct: 295 I 295
>gi|293553120|ref|ZP_06673758.1| MutS2 family protein [Enterococcus faecium E1039]
gi|430822931|ref|ZP_19441506.1| MutS2 protein [Enterococcus faecium E0120]
gi|430838514|ref|ZP_19456460.1| MutS2 protein [Enterococcus faecium E0688]
gi|430857731|ref|ZP_19475364.1| MutS2 protein [Enterococcus faecium E1552]
gi|430865610|ref|ZP_19481245.1| MutS2 protein [Enterococcus faecium E1574]
gi|431742713|ref|ZP_19531597.1| MutS2 protein [Enterococcus faecium E2071]
gi|291602711|gb|EFF32925.1| MutS2 family protein [Enterococcus faecium E1039]
gi|430442860|gb|ELA52881.1| MutS2 protein [Enterococcus faecium E0120]
gi|430491756|gb|ELA68208.1| MutS2 protein [Enterococcus faecium E0688]
gi|430546941|gb|ELA86883.1| MutS2 protein [Enterococcus faecium E1552]
gi|430552957|gb|ELA92674.1| MutS2 protein [Enterococcus faecium E1574]
gi|430607682|gb|ELB44983.1| MutS2 protein [Enterococcus faecium E2071]
Length = 786
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELNRFINDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|431414518|ref|ZP_19512337.1| MutS2 protein [Enterococcus faecium E1630]
gi|431759732|ref|ZP_19548343.1| MutS2 protein [Enterococcus faecium E3346]
gi|430589251|gb|ELB27396.1| MutS2 protein [Enterococcus faecium E1630]
gi|430625913|gb|ELB62516.1| MutS2 protein [Enterococcus faecium E3346]
Length = 786
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELNRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GVVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|257882656|ref|ZP_05662309.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,502]
gi|294622756|ref|ZP_06701711.1| MutS2 family protein [Enterococcus faecium U0317]
gi|416132269|ref|ZP_11597881.1| MutS2 family protein [Enterococcus faecium E4452]
gi|424795296|ref|ZP_18221164.1| MutS2 family protein [Enterococcus faecium S447]
gi|424855055|ref|ZP_18279381.1| MutS2 family protein [Enterococcus faecium R499]
gi|424950176|ref|ZP_18365348.1| MutS2 family protein [Enterococcus faecium R496]
gi|424957193|ref|ZP_18371933.1| MutS2 family protein [Enterococcus faecium R446]
gi|424960033|ref|ZP_18374581.1| MutS2 family protein [Enterococcus faecium P1986]
gi|424966350|ref|ZP_18380154.1| MutS2 family protein [Enterococcus faecium P1140]
gi|424994917|ref|ZP_18406830.1| MutS2 family protein [Enterococcus faecium ERV168]
gi|424998362|ref|ZP_18410055.1| MutS2 family protein [Enterococcus faecium ERV165]
gi|425001768|ref|ZP_18413255.1| MutS2 family protein [Enterococcus faecium ERV161]
gi|425004274|ref|ZP_18415594.1| MutS2 family protein [Enterococcus faecium ERV102]
gi|425012205|ref|ZP_18423037.1| MutS2 family protein [Enterococcus faecium E422]
gi|425018028|ref|ZP_18428507.1| MutS2 family protein [Enterococcus faecium C621]
gi|425032607|ref|ZP_18437636.1| MutS2 family protein [Enterococcus faecium 515]
gi|430827998|ref|ZP_19446128.1| MutS2 protein [Enterococcus faecium E0269]
gi|431746632|ref|ZP_19535457.1| MutS2 protein [Enterococcus faecium E2134]
gi|431767631|ref|ZP_19556078.1| MutS2 protein [Enterococcus faecium E1321]
gi|431775339|ref|ZP_19563612.1| MutS2 protein [Enterococcus faecium E2560]
gi|431780207|ref|ZP_19568392.1| MutS2 protein [Enterococcus faecium E4389]
gi|431781496|ref|ZP_19569643.1| MutS2 protein [Enterococcus faecium E6012]
gi|431786129|ref|ZP_19574145.1| MutS2 protein [Enterococcus faecium E6045]
gi|257818314|gb|EEV45642.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,502]
gi|291597807|gb|EFF28944.1| MutS2 family protein [Enterococcus faecium U0317]
gi|364093369|gb|EHM35646.1| MutS2 family protein [Enterococcus faecium E4452]
gi|402924563|gb|EJX44761.1| MutS2 family protein [Enterococcus faecium S447]
gi|402931801|gb|EJX51358.1| MutS2 family protein [Enterococcus faecium R499]
gi|402933643|gb|EJX53063.1| MutS2 family protein [Enterococcus faecium R496]
gi|402944145|gb|EJX62582.1| MutS2 family protein [Enterococcus faecium R446]
gi|402949000|gb|EJX67094.1| MutS2 family protein [Enterococcus faecium P1986]
gi|402956711|gb|EJX74151.1| MutS2 family protein [Enterococcus faecium P1140]
gi|402978799|gb|EJX94516.1| MutS2 family protein [Enterococcus faecium ERV168]
gi|402983441|gb|EJX98841.1| MutS2 family protein [Enterococcus faecium ERV165]
gi|402985390|gb|EJY00600.1| MutS2 family protein [Enterococcus faecium ERV161]
gi|402990027|gb|EJY04923.1| MutS2 family protein [Enterococcus faecium ERV102]
gi|402994063|gb|EJY08626.1| MutS2 family protein [Enterococcus faecium E422]
gi|403003183|gb|EJY17093.1| MutS2 family protein [Enterococcus faecium C621]
gi|403012545|gb|EJY25764.1| MutS2 family protein [Enterococcus faecium 515]
gi|430484079|gb|ELA61114.1| MutS2 protein [Enterococcus faecium E0269]
gi|430608534|gb|ELB45780.1| MutS2 protein [Enterococcus faecium E2134]
gi|430630584|gb|ELB66939.1| MutS2 protein [Enterococcus faecium E1321]
gi|430640686|gb|ELB76520.1| MutS2 protein [Enterococcus faecium E4389]
gi|430643055|gb|ELB78811.1| MutS2 protein [Enterococcus faecium E2560]
gi|430646202|gb|ELB81696.1| MutS2 protein [Enterococcus faecium E6045]
gi|430649441|gb|ELB84818.1| MutS2 protein [Enterococcus faecium E6012]
Length = 786
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 136/301 (45%), Gaps = 16/301 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRG-- 61
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLYI 171
G+ + +++ ++R + L V L Q S L + L I + +D I
Sbjct: 62 ----GIPIPKIENIRPHMKR---IEIGADLNGVELAQVSRVLSTTSELNRFIDDLSDSEI 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 115 EFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLDG 174
Query: 232 LIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
++R +N + L + ++ + R I + G ++ S+SG IEP V LN+
Sbjct: 175 IVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLNN 234
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 235 RLRQYQIAERNEIQRILSELSAELVPHRQEIIHNTYVIGKMDLMNAKARFGKEVKAIVPG 294
Query: 349 I 349
I
Sbjct: 295 I 295
>gi|430855305|ref|ZP_19473014.1| MutS2 protein [Enterococcus faecium E1392]
gi|430547311|gb|ELA87247.1| MutS2 protein [Enterococcus faecium E1392]
Length = 786
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 134/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEE-QTFTNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELNRFIDDLYDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|424819498|ref|ZP_18244589.1| MutS2 family protein [Enterococcus faecium R501]
gi|402926153|gb|EJX46215.1| MutS2 family protein [Enterococcus faecium R501]
Length = 786
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ I+ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHIKRIEIGADLNG------VELAQVSRVLSTTSELNRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|430835419|ref|ZP_19453409.1| MutS2 protein [Enterococcus faecium E0680]
gi|430489410|gb|ELA66024.1| MutS2 protein [Enterococcus faecium E0680]
Length = 786
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELNRFINDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVRAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|69245126|ref|ZP_00603250.1| MutS 2 protein [Enterococcus faecium DO]
gi|257879660|ref|ZP_05659313.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,230,933]
gi|257890326|ref|ZP_05669979.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,410]
gi|260559678|ref|ZP_05831858.1| DNA mismatch repair protein MutS [Enterococcus faecium C68]
gi|293560080|ref|ZP_06676584.1| MutS2 family protein [Enterococcus faecium E1162]
gi|294614397|ref|ZP_06694313.1| MutS2 family protein [Enterococcus faecium E1636]
gi|314938141|ref|ZP_07845446.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium TX0133a04]
gi|314943818|ref|ZP_07850553.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium TX0133C]
gi|314949777|ref|ZP_07853087.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium TX0082]
gi|314951185|ref|ZP_07854243.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium TX0133A]
gi|314994416|ref|ZP_07859700.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium TX0133B]
gi|314995612|ref|ZP_07860706.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium TX0133a01]
gi|383329426|ref|YP_005355310.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium Aus0004]
gi|389869286|ref|YP_006376709.1| MutS family DNA mismatch repair protein [Enterococcus faecium DO]
gi|415898673|ref|ZP_11551403.1| MutS2 family protein [Enterococcus faecium E4453]
gi|424789896|ref|ZP_18216506.1| MutS2 family protein [Enterococcus faecium V689]
gi|424912749|ref|ZP_18336124.1| MutS2 family protein [Enterococcus faecium R497]
gi|424955437|ref|ZP_18370273.1| MutS2 family protein [Enterococcus faecium R494]
gi|424964246|ref|ZP_18378359.1| MutS2 family protein [Enterococcus faecium P1190]
gi|424970080|ref|ZP_18383617.1| MutS2 family protein [Enterococcus faecium P1139]
gi|424974783|ref|ZP_18387998.1| MutS2 family protein [Enterococcus faecium P1137]
gi|424978200|ref|ZP_18391145.1| MutS2 family protein [Enterococcus faecium P1123]
gi|424980291|ref|ZP_18393093.1| MutS2 family protein [Enterococcus faecium ERV99]
gi|424983595|ref|ZP_18396176.1| MutS2 family protein [Enterococcus faecium ERV69]
gi|424987917|ref|ZP_18400268.1| MutS2 family protein [Enterococcus faecium ERV38]
gi|424991796|ref|ZP_18403927.1| MutS2 family protein [Enterococcus faecium ERV26]
gi|425007017|ref|ZP_18418168.1| MutS2 family protein [Enterococcus faecium ERV1]
gi|425016051|ref|ZP_18426638.1| MutS2 family protein [Enterococcus faecium E417]
gi|425021060|ref|ZP_18431339.1| MutS2 family protein [Enterococcus faecium C497]
gi|425024153|ref|ZP_18434239.1| MutS2 family protein [Enterococcus faecium C1904]
gi|425035142|ref|ZP_18439993.1| MutS2 family protein [Enterococcus faecium 514]
gi|425039209|ref|ZP_18443767.1| MutS2 family protein [Enterococcus faecium 513]
gi|425041479|ref|ZP_18445872.1| MutS2 family protein [Enterococcus faecium 511]
gi|425046563|ref|ZP_18450570.1| MutS2 family protein [Enterococcus faecium 510]
gi|425049153|ref|ZP_18453021.1| MutS2 family protein [Enterococcus faecium 509]
gi|425060412|ref|ZP_18463707.1| MutS2 family protein [Enterococcus faecium 503]
gi|430831133|ref|ZP_19449186.1| MutS2 protein [Enterococcus faecium E0333]
gi|430852078|ref|ZP_19469813.1| MutS2 protein [Enterococcus faecium E1258]
gi|431003613|ref|ZP_19488711.1| MutS2 protein [Enterococcus faecium E1578]
gi|431251925|ref|ZP_19503983.1| MutS2 protein [Enterococcus faecium E1623]
gi|431755260|ref|ZP_19543914.1| MutS2 protein [Enterococcus faecium E2883]
gi|431771238|ref|ZP_19559624.1| MutS2 protein [Enterococcus faecium E1644]
gi|431772678|ref|ZP_19561016.1| MutS2 protein [Enterococcus faecium E2369]
gi|68195969|gb|EAN10402.1| MutS 2 protein [Enterococcus faecium DO]
gi|257813888|gb|EEV42646.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,230,933]
gi|257826686|gb|EEV53312.1| DNA mismatch repair protein MutS [Enterococcus faecium 1,231,410]
gi|260074346|gb|EEW62668.1| DNA mismatch repair protein MutS [Enterococcus faecium C68]
gi|291592705|gb|EFF24298.1| MutS2 family protein [Enterococcus faecium E1636]
gi|291605947|gb|EFF35377.1| MutS2 family protein [Enterococcus faecium E1162]
gi|313590200|gb|EFR69045.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium TX0133a01]
gi|313591188|gb|EFR70033.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium TX0133B]
gi|313596664|gb|EFR75509.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium TX0133A]
gi|313597542|gb|EFR76387.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium TX0133C]
gi|313642488|gb|EFS07068.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium TX0133a04]
gi|313643850|gb|EFS08430.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium TX0082]
gi|364089863|gb|EHM32509.1| MutS2 family protein [Enterococcus faecium E4453]
gi|378939120|gb|AFC64192.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus faecium Aus0004]
gi|388534535|gb|AFK59727.1| MutS family DNA mismatch repair protein [Enterococcus faecium DO]
gi|402921430|gb|EJX41876.1| MutS2 family protein [Enterococcus faecium V689]
gi|402927678|gb|EJX47618.1| MutS2 family protein [Enterococcus faecium R497]
gi|402934061|gb|EJX53454.1| MutS2 family protein [Enterococcus faecium R494]
gi|402947097|gb|EJX65327.1| MutS2 family protein [Enterococcus faecium P1190]
gi|402955532|gb|EJX73054.1| MutS2 family protein [Enterococcus faecium P1137]
gi|402962705|gb|EJX79623.1| MutS2 family protein [Enterococcus faecium P1139]
gi|402962932|gb|EJX79835.1| MutS2 family protein [Enterococcus faecium P1123]
gi|402966828|gb|EJX83433.1| MutS2 family protein [Enterococcus faecium ERV99]
gi|402971214|gb|EJX87503.1| MutS2 family protein [Enterococcus faecium ERV69]
gi|402973400|gb|EJX89529.1| MutS2 family protein [Enterococcus faecium ERV38]
gi|402975823|gb|EJX91752.1| MutS2 family protein [Enterococcus faecium ERV26]
gi|402993517|gb|EJY08117.1| MutS2 family protein [Enterococcus faecium E417]
gi|402995904|gb|EJY10320.1| MutS2 family protein [Enterococcus faecium ERV1]
gi|403007752|gb|EJY21300.1| MutS2 family protein [Enterococcus faecium C497]
gi|403007864|gb|EJY21411.1| MutS2 family protein [Enterococcus faecium C1904]
gi|403017153|gb|EJY29929.1| MutS2 family protein [Enterococcus faecium 513]
gi|403018752|gb|EJY31412.1| MutS2 family protein [Enterococcus faecium 514]
gi|403024013|gb|EJY36210.1| MutS2 family protein [Enterococcus faecium 510]
gi|403025767|gb|EJY37812.1| MutS2 family protein [Enterococcus faecium 511]
gi|403028786|gb|EJY40587.1| MutS2 family protein [Enterococcus faecium 509]
gi|403042608|gb|EJY53554.1| MutS2 family protein [Enterococcus faecium 503]
gi|430482004|gb|ELA59145.1| MutS2 protein [Enterococcus faecium E0333]
gi|430542660|gb|ELA82768.1| MutS2 protein [Enterococcus faecium E1258]
gi|430561702|gb|ELB00956.1| MutS2 protein [Enterococcus faecium E1578]
gi|430578351|gb|ELB16903.1| MutS2 protein [Enterococcus faecium E1623]
gi|430617260|gb|ELB54134.1| MutS2 protein [Enterococcus faecium E2883]
gi|430633763|gb|ELB69917.1| MutS2 protein [Enterococcus faecium E1644]
gi|430637757|gb|ELB73756.1| MutS2 protein [Enterococcus faecium E2369]
Length = 786
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELNRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|423417539|ref|ZP_17394628.1| MutS2 protein [Bacillus cereus BAG3X2-1]
gi|401107818|gb|EJQ15763.1| MutS2 protein [Bacillus cereus BAG3X2-1]
Length = 786
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 143/400 (35%), Positives = 220/400 (55%), Gaps = 37/400 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREKVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+R+I+E +R K+ K K ++ +A + + + +QLR +
Sbjct: 555 -QRQIIEFN-DERDEKLLK-----------AQKEGEEKVEAAKKEAEGIIQELRQLRKAQ 601
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPNVG 801
L + ++ A+ +VK KQ VK T + G
Sbjct: 602 ---------------LINVKDHELIEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLRAG 644
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
D V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 645 DEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + L D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVELQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|425052198|ref|ZP_18455823.1| MutS2 family protein [Enterococcus faecium 506]
gi|403035239|gb|EJY46637.1| MutS2 family protein [Enterococcus faecium 506]
Length = 786
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEKVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELNRFIDDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|304404921|ref|ZP_07386581.1| MutS2 family protein [Paenibacillus curdlanolyticus YK9]
gi|304345800|gb|EFM11634.1| MutS2 family protein [Paenibacillus curdlanolyticus YK9]
Length = 788
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 146/400 (36%), Positives = 216/400 (54%), Gaps = 39/400 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + +++TGPNTGGKT+ LKT+GL +M+ SGL I + + +++ FD+++A
Sbjct: 317 VPIDVELGNSFSTIIVTGPNTGGKTVSLKTIGLLSLMSMSGLFIPAEDGSQMCVFDAIYA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ Q+LSTFS HL I I++ T +SLVLLDE+GAGT+P EG+AL +++LE
Sbjct: 377 DIGDEQSIEQNLSTFSSHLTNIIRILNAMTPKSLVLLDELGAGTDPAEGSALAIAILEHI 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
GS + +ATTH+ ELK Y+ + NA MEFD L PTY++L GVPGRS+A IAE
Sbjct: 437 HRKGSRI-VATTHYSELKAYAYNRNGVINASMEFDVATLSPTYRLLVGVPGRSNAFAIAE 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL ++ +AR E++E + +E E A + +L + L +
Sbjct: 496 RLGLSQQIIDHAR-------GEVSEDDMRVENMIASLEEDRLSAETERQSAESLRRELEQ 548
Query: 685 TRRKILEHCASQRFRKVQK---ISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLR 741
R K H A Q+ + Q+ + A AR+ V K+ + S R L L
Sbjct: 549 LREK---HAAEQQRFEEQRDKLLLKAQEEARAAVRKAKLEAEQIISDLRKLA------LE 599
Query: 742 PSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVG 801
AS V +++ + ++ P A++ K K P G
Sbjct: 600 EGAS-------VKEHKLIEARRKLDEASPELHKPKPAANRSGKSAKIGP----------G 642
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
D V V S +KG+VI++ S E +VQ+G MK + D+
Sbjct: 643 DEVRVYSLNQKGSVIELTGS--EALVQLGIMKMKVSLDDL 680
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 140/302 (46%), Gaps = 22/302 (7%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTY-QDSLRLLDETNAAIEMQKHGSC 112
L +++ K+ ++ A TSLG+ S + ++ + SL+ DE A ++
Sbjct: 6 LNTMDYYKMIQKLAGHALTSLGKGVAEQLKPSSDLSFVKHSLQATDEAYKADRLK----G 61
Query: 113 SLDLTG-VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ G VDL+ ++++ R L P E LL+ +ET++ S R K L+
Sbjct: 62 TPPFRGIVDLT---ASLKRARIGGTLNPAE------LLEIAETIR-SGRRVKKHVLQLHD 111
Query: 172 RF-MPLTQMIMQLFV-NRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+PL I L ++ +I +D++ + D ASP L R +++ E ++ + +
Sbjct: 112 DDPIPLLHDIADLLSEHKPTEDAIFACIDDNAEVMDQASPELASVRRELRNGESRIREKL 171
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVP 285
+ +IR+ + + + + ++ + R I ++ S F G++ SSSG IEP V
Sbjct: 172 EQMIRSSSVQKMLQDAIITLRNDRYVIPVKSEYRSNFGGIVHDQSSSGATMFIEPEVIVS 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
+N++L++ RA+ + E VL LT D++ G+ LD A+A + T
Sbjct: 232 MNNKLRELRANEEREIEKVLQKLTAIAAEVSDDLLADAEGLGMLDFAFAKARLAHELKAT 291
Query: 346 SP 347
P
Sbjct: 292 LP 293
>gi|406580064|ref|ZP_11055285.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus sp. GMD4E]
gi|406584557|ref|ZP_11059584.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus sp. GMD2E]
gi|406590812|ref|ZP_11065162.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus sp. GMD1E]
gi|410936712|ref|ZP_11368575.1| MutS family DNA mismatch repair protein [Enterococcus sp. GMD5E]
gi|404454651|gb|EKA01563.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus sp. GMD4E]
gi|404463909|gb|EKA09484.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus sp. GMD2E]
gi|404468826|gb|EKA13702.1| recombination and DNA strand exchange inhibitor protein
[Enterococcus sp. GMD1E]
gi|410734742|gb|EKQ76660.1| MutS family DNA mismatch repair protein [Enterococcus sp. GMD5E]
Length = 786
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E RHF+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRHFVSEAQELHDDL 553
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 136/301 (45%), Gaps = 16/301 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRG-- 61
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLYI 171
G+ + +++ ++R + L V L Q S L + L I + +D I
Sbjct: 62 ----GIPIPKIENIRPHMKR---IEIGADLNGVELAQVSRVLSTTSELNRFIDDLSDSEI 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 115 EFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLDG 174
Query: 232 LIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLND 288
++R +N + L + ++ + R I + G ++ S+SG IEP V LN+
Sbjct: 175 IVRGKNAKYLSDAIITMRNDRYVIPVKHEYRGVFGGVVHDQSASGQTLFIEPKQVVDLNN 234
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 235 RLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVPG 294
Query: 349 I 349
I
Sbjct: 295 I 295
>gi|386585395|ref|YP_006081797.1| DNA mismatch repair protein [Streptococcus suis D12]
gi|353737541|gb|AER18549.1| DNA mismatch repair protein [Streptococcus suis D12]
Length = 777
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 151/223 (67%), Gaps = 5/223 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
+A PVP D++ + +VITGPNTGGKTI LKT+GL +MA+SGL IL+ + ++V F
Sbjct: 307 IAKPVPNDLYFGSQLTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I++++ SL+L DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHTVQILAEADQDSLILFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
L+ G + T+ATTH+ ELK ENA MEFD L+PTYK + GVPGRS+A
Sbjct: 427 LDDLRLRG-IKTMATTHYPELKAYGIETSGIENASMEFDSNSLRPTYKFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
IA RLGL I++Q+A Q + +++N +I E+ ++Q +E
Sbjct: 486 EIARRLGLSDIIIQSA-QSWTDTDSDVNRII---EKLESQTVE 524
>gi|418010214|ref|ZP_12649997.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
Lc-10]
gi|410554421|gb|EKQ28397.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
Lc-10]
Length = 786
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 224/396 (56%), Gaps = 49/396 (12%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI + K + +VITGPNTGGKTI LKT+GL +M +SGL I + + +++ FD VFADIG
Sbjct: 319 DIPLGDKYQAMVITGPNTGGKTITLKTLGLLQLMGQSGLFIPADDESRIGIFDEVFADIG 378
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ Q+LSTFS H+ I +I+ Q + SLVL DE+GAGT+P EG AL +++L+A E
Sbjct: 379 DEQSIEQNLSTFSAHMDNIVHILKQLSQNSLVLFDELGAGTDPQEGAALAIAILDAVGEV 438
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L+PTY++L GVPGRS+A +I+ RLG
Sbjct: 439 GAYV-VATTHYPELKLYGYNTAKTINASMEFDSKTLQPTYRLLVGVPGRSNAFDISARLG 497
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
LP ++V+ A+ + + S E+N +I ++E+ + AR L ++++H L +
Sbjct: 498 LPSVIVERAKSMISSDSHELNNMISDLEKQRKAAETAYEAARRQLADAQSVHDELAAAYK 557
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
K ++R ++Q+ D A SLV K A++ K +QLR
Sbjct: 558 KF----TTERDAQLQQAKDKA---NSLVDK-----------AQTKADKIIKQLR-----Q 594
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP---------RVKRTELP 798
+ T G TV E+ A+ + +K + Q R + +
Sbjct: 595 MQLTNPG-------------TVK--ENQLIAAKTALKQLHQDEPLQKNRILRREREKQAL 639
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+VGD V V+S+ + GT+++ + K+ VQ+G +K
Sbjct: 640 HVGDEVKVASYDQTGTLLE-QFDKKHWQVQLGILKM 674
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 127/304 (41%), Gaps = 27/304 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL---LDETNAAIEMQKHG 110
L+ LE+DK+ ++ T+ GR QL Q D + + LDET G
Sbjct: 6 LKTLEYDKIQQALLGQVVTANGR-----QLVQAMQPLTDPVAVQQALDET-------ADG 53
Query: 111 SCSLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
+ +L L G L + A++ V + L E ++ +LQ + L D
Sbjct: 54 ASALRLKGGIPVPQLENIDPALKRVDIGAVLNGQELASISRVLQTVSAIDKFL-----TD 108
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
I F L + L V L + + VD DG++ D ASP L R Q++ +E ++
Sbjct: 109 LQDQIDFRQLYTLQESLTVLPQLSRRLKTAVDPDGTLTDEASPQLHGVREQIKSIEGEIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIH-GRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSA 283
M R ++ L + +I R I A+ + G ++ S G IEP +
Sbjct: 169 GKMTNYTRGAQSKYLSDPIVTIRDDRYVIPVKAEYRAKFGGVVHDQSATGQTLFIEPQAI 228
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+ L++A+ + +L L+ ++ +I+ + D +NA+A + +
Sbjct: 229 VALNNRLREAQLAEVAEINRILAELSNELAPYTGQIKANAAVLGHFDFINAKARLAKAEK 288
Query: 344 GTSP 347
T P
Sbjct: 289 ATEP 292
>gi|191637667|ref|YP_001986833.1| DNA mismatch repair protein [Lactobacillus casei BL23]
gi|385819398|ref|YP_005855785.1| DNA mismatch repair protein, MutSB [Lactobacillus casei LC2W]
gi|385822563|ref|YP_005858905.1| DNA mismatch repair protein, MutSB [Lactobacillus casei BD-II]
gi|409996521|ref|YP_006750922.1| MutS2 protein [Lactobacillus casei W56]
gi|238693020|sp|B3WC74.1|MUTS2_LACCB RecName: Full=MutS2 protein
gi|190711969|emb|CAQ65975.1| DNA mismatch repair protein [Lactobacillus casei BL23]
gi|327381725|gb|AEA53201.1| DNA mismatch repair protein, MutSB [Lactobacillus casei LC2W]
gi|327384890|gb|AEA56364.1| DNA mismatch repair protein, MutSB [Lactobacillus casei BD-II]
gi|406357533|emb|CCK21803.1| MutS2 protein [Lactobacillus casei W56]
Length = 786
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 224/396 (56%), Gaps = 49/396 (12%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI + K + +VITGPNTGGKTI LKT+GL +M +SGL I + + +++ FD VFADIG
Sbjct: 319 DIPLGDKYQAMVITGPNTGGKTITLKTLGLLQLMGQSGLFIPADDESRIGIFDEVFADIG 378
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ Q+LSTFS H+ I +I+ Q + SLVL DE+GAGT+P EG AL +++L+A E
Sbjct: 379 DEQSIEQNLSTFSAHMDNIVHILKQLSQNSLVLFDELGAGTDPQEGAALAIAILDAVGEV 438
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L+PTY++L GVPGRS+A +I+ RLG
Sbjct: 439 GAYV-VATTHYPELKLYGYNTAKTINASMEFDSKTLQPTYRLLVGVPGRSNAFDISARLG 497
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
LP ++V+ A+ + + S E+N +I ++E+ + AR L ++++H L +
Sbjct: 498 LPSVIVERAKSMISSDSHELNNMISDLEKQRKAAETAYEAARRQLADAQSVHDELAAAYK 557
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
K ++R ++Q+ D A SLV K A++ K +QLR
Sbjct: 558 KF----TTERDAQLQQAKDKA---NSLVDK-----------AQTKADKIIKQLR-----Q 594
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP---------RVKRTELP 798
+ T G TV E+ A+ + +K + Q R + +
Sbjct: 595 MQLTNPG-------------TVK--ENQLIAAKTALKQLHQDEPLQKNRILRREREKQAL 639
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+VGD V V+S+ + GT+++ + K+ VQ+G +K
Sbjct: 640 HVGDEVKVASYDQTGTLLE-QFDKKHWQVQLGILKM 674
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 126/304 (41%), Gaps = 27/304 (8%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSL---RLLDETNAAIEMQKHG 110
L+ LE+DK+ ++ T+ GR QL Q D + + LDET G
Sbjct: 6 LKTLEYDKIQQALLGQVVTANGR-----QLVQAMQPLTDPVAVQQALDET-------ADG 53
Query: 111 SCSLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
+ +L L G L + A++ V + L E ++ +LQ + L D
Sbjct: 54 ASALRLKGGIPVPQLENIDPALKRVDIGAVLNGQELASISRVLQTVSAIDKFL-----TD 108
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
I F L + L V L + + VD DG++ D ASP L R Q++ +E K+
Sbjct: 109 LQDQIDFRQLYTLQESLTVLPQLSRRLKTAVDPDGTLTDEASPQLHGVREQIKSIEGKIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIH-GRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSA 283
M R ++ L + +I R I A+ + G ++ S G IEP
Sbjct: 169 GKMTNYTRGAQSKYLSDPIVTIRDDRYVIPVKAEYRAKFGGVVHDQSATGQTLFIEPQVI 228
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+ L++A+ + +L L+ ++ +I+ + D +NA+A + +
Sbjct: 229 VALNNRLREAQLAEVAEINRILAELSNELAPYTGQIKANAAVLGHFDFINAKARLAKAEK 288
Query: 344 GTSP 347
T P
Sbjct: 289 ATEP 292
>gi|170755146|ref|YP_001782757.1| recombination and DNA strand exchange inhibitor protein
[Clostridium botulinum B1 str. Okra]
gi|429246442|ref|ZP_19209762.1| recombination and DNA strand exchange inhibitor protein
[Clostridium botulinum CFSAN001628]
gi|229486369|sp|B1IMK5.1|MUTS2_CLOBK RecName: Full=MutS2 protein
gi|169120358|gb|ACA44194.1| MutS2 family protein [Clostridium botulinum B1 str. Okra]
gi|428756532|gb|EKX79084.1| recombination and DNA strand exchange inhibitor protein
[Clostridium botulinum CFSAN001628]
Length = 788
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 142/413 (34%), Positives = 221/413 (53%), Gaps = 37/413 (8%)
Query: 436 VSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
V +E HP VPI + + + L+ITGPNTGGKT+ LKTVGL +MA SGL I
Sbjct: 299 VDIIEGRHPLIDRREVVPISVKLGEEFTSLMITGPNTGGKTVTLKTVGLIHLMAMSGLMI 358
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ E + + +F++VFADIGDEQS+ QSLSTFS H+K I I+ ++ SLVL DE+GAGT
Sbjct: 359 PARENSVISYFNNVFADIGDEQSIEQSLSTFSSHMKNIVEIMDKADENSLVLFDELGAGT 418
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG AL +S+LE + G+ + IATTH+ ELK + ENA +EFD L+PTY+
Sbjct: 419 DPTEGAALAISILENLRKRGTKI-IATTHYSELKAYALKKEGVENASVEFDVETLRPTYR 477
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
+L G+PG+S+A I++RLGLP ++ AR+ + E+I E + + ++ +A
Sbjct: 478 LLIGIPGKSNAFEISKRLGLPDYIIDFARENISNENIRFEELI---ENLQEKSIKAQEDA 534
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
R L+ N L+ R + ++ +QK+ D A I + A+ + A +
Sbjct: 535 R----LAEN-----LKLERDKEKKKYEEKLEGLQKVRDNALID---ARREAKNIIKEAKE 582
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
+ K +QL S K+ + + L ++++ E +K++K+
Sbjct: 583 EADKILKDIRQLERMGYSSDARRKLEEERKKLKDKLD--SIEEKEIKTVHKGEALKNVKE 640
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V ++S +K V+ +K +++VQ G MK D+
Sbjct: 641 ------------GDEVLLASINQKVIVLSKPDNKGDVLVQAGIMKITANIKDL 681
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 141/303 (46%), Gaps = 20/303 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQ-KHGS 111
S++VLE++K+ + ++ T ++ + L + Y+ L+ET A ++ G+
Sbjct: 5 SIKVLEFNKIQEFLKNYTCTKAAKD-IIEDLKPYDSVYE-VREHLEETKEAFKLLITKGA 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ GV ++S I + S L P + L + A+L+ + + + +E++
Sbjct: 63 PPFE--GV--YDIRSGISLAEKRSTLLPGQLLKIAAVLRCARRFKEYINHKEEEES---- 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ L + +F + + I ++ + I D AS L R + L+ K Y + D
Sbjct: 115 -YRVLENICEGIFSLPKIEEEIFNAIEGEDEIADRASSTLYNIR---RSLKEKNYSVRDK 170
Query: 232 LIRNENNESLFLE--VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+ + S +L+ + ++ G R + A+ + + GL+ SS+G IEP+S V L
Sbjct: 171 INSLVRSYSSYLQENIYTVRGDRYVLPVKAEHKGAVPGLVHDQSSTGATLFIEPMSLVNL 230
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+E+++ E +L L+ K+ ++ ++ N + +LD + A+A ++ + T
Sbjct: 231 NNEIKELMLKEKAEIERILTVLSAKINANITGVKTDANIVWELDFIFAKAKFASEYNCTC 290
Query: 347 PNI 349
P I
Sbjct: 291 PTI 293
>gi|300173772|ref|YP_003772938.1| DNA mismatch repair protein MutS2 [Leuconostoc gasicomitatum LMG
18811]
gi|299888151|emb|CBL92119.1| DNA mismatch repair protein MutS2 [Leuconostoc gasicomitatum LMG
18811]
Length = 801
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 217/802 (27%), Positives = 351/802 (43%), Gaps = 132/802 (16%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGR----------EATLTQLWSINQTYQDSLRLLDETNAA 103
L+ LE+DK+ + F T +GR + + W + D + L+D
Sbjct: 6 LQTLEYDKIKSQLRGFLSTPVGRLEADKLHPETDVNIINYWLLETA--DGV-LIDRLKGG 62
Query: 104 IEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI 163
I + K + L +++S SA + LR A+A E + SL+
Sbjct: 63 IPLAKLADITPHLKRLNISASLSATELSEIGTVLRNTTAIANFFKQMADEIIGESLKV-- 120
Query: 164 KEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
L + +L + + + I +D G I D AS LK RG++ E
Sbjct: 121 ------------LPEQAEKLAILSDVTRQIEIAIDATGRINDEASFDLKSIRGKITGNEH 168
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEP 280
+ M R ++ + L + +I R + A+ + G ++ S G IEP
Sbjct: 169 AVKSKMQSYTRGKSAQYLSDPIITIRAERYVLPVKAEYRNQFGGVVHDQSQTGQTLYIEP 228
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
+ V LN++L + R E+ VL L+ ++ +EI + +N + D VNA+A +
Sbjct: 229 QAVVELNNKLSELRVKEQAEEQHVLQILSSALEPYTNEIAQNVNILGHFDFVNAKARLAA 288
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
P + + E + L +A+HPLL K
Sbjct: 289 QLDAMQPVVNI----------------------ENHVDLQQAWHPLL-----------DK 315
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
+ AN DI + + + ++I
Sbjct: 316 KIAVAN-----------------------------------------DITLGDQYKSIII 334
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKTI +KT+GL +MA+SGL I + + V F +FADIGDEQS+ QSLSTFS
Sbjct: 335 TGPNTGGKTITIKTLGLLQLMAQSGLFITTKRPSTVGVFHEIFADIGDEQSIEQSLSTFS 394
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H+ I ++I SLV+ DE+GAGT+P EG AL +++L+ A G + IATTH+ E
Sbjct: 395 SHMANIISMIDDIDGNSLVIFDELGAGTDPAEGAALAIAILDKVASLGGYV-IATTHYPE 453
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK Y+ NA M FD LKPTY+ L GVPG+S+A+ IA+RLGL V+ A L
Sbjct: 454 LKLYGYNRPETLNASMVFDVETLKPTYQFLMGVPGQSNALAIAKRLGLGEDVIGAATALT 513
Query: 641 GAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRK 700
+ ++N++II++ + ++ E L + ++L +RK+ +R +
Sbjct: 514 DESDQDLNDMIIDLVTQRDAVKKNNAELELRLKTTAERSESLAEQQRKL----DKERAQI 569
Query: 701 VQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVL 760
V + + A + K A+QL + R V ++A L + Q L K
Sbjct: 570 VLEAKNEANHIVASTKKQAEQLISEIRKERLNVGQQAGSL---SEQDLQVKK-------- 618
Query: 761 TSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEP 820
DK+ + S+ K+ K + K + GD + V S+ ++G ++K +
Sbjct: 619 ------GQFDKLRQ----NDSLEKN-KVLQKAKLAKALATGDEIVVKSYNQQGILVK-QH 666
Query: 821 SKEEIVVQVGNMKWIMKFTDIV 842
S + V++G +K ++ DIV
Sbjct: 667 SNGQWEVEMGILKMLVDEDDIV 688
>gi|168179617|ref|ZP_02614281.1| MutS2 family protein [Clostridium botulinum NCTC 2916]
gi|226950552|ref|YP_002805643.1| recombination and DNA strand exchange inhibitor protein
[Clostridium botulinum A2 str. Kyoto]
gi|421835524|ref|ZP_16270271.1| recombination and DNA strand exchange inhibitor protein
[Clostridium botulinum CFSAN001627]
gi|254766595|sp|C1FKL4.1|MUTS2_CLOBJ RecName: Full=MutS2 protein
gi|182669561|gb|EDT81537.1| MutS2 family protein [Clostridium botulinum NCTC 2916]
gi|226843815|gb|ACO86481.1| MutS2 family protein [Clostridium botulinum A2 str. Kyoto]
gi|409742817|gb|EKN42043.1| recombination and DNA strand exchange inhibitor protein
[Clostridium botulinum CFSAN001627]
Length = 788
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 142/413 (34%), Positives = 221/413 (53%), Gaps = 37/413 (8%)
Query: 436 VSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
V +E HP VPI + + + L+ITGPNTGGKT+ LKTVGL +MA SGL I
Sbjct: 299 VDIIEGRHPLIDRREVVPISVKLGEEFTSLMITGPNTGGKTVTLKTVGLIHLMAMSGLMI 358
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ E + + +F++VFADIGDEQS+ QSLSTFS H+K I I+ ++ SLVL DE+GAGT
Sbjct: 359 PARENSVISYFNNVFADIGDEQSIEQSLSTFSSHMKNIVEIMDKADENSLVLFDELGAGT 418
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG AL +S+LE + G+ + IATTH+ ELK + ENA +EFD L+PTY+
Sbjct: 419 DPTEGAALAISILENLRKRGTKI-IATTHYSELKAYALRKEGVENASVEFDVETLRPTYR 477
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
+L G+PG+S+A I++RLGLP ++ AR+ + E+I E + + ++ +A
Sbjct: 478 LLIGIPGKSNAFEISKRLGLPDYIIDFARENISNENIRFEELI---ENLQEKSIKAEEDA 534
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
R L+ N L+ R + ++ +QK+ D A I + A+ + A +
Sbjct: 535 R----LAEN-----LKLERDKEKKKYEEKLEGLQKVRDNALID---ARREAKNIIKEAKE 582
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
+ K +QL S K+ + + L ++++ E +K++K+
Sbjct: 583 EADKILKDIRQLERMGYSSDARRKLEEERKKLKDKLD--SIEEKEIKTVHEGEALKNVKE 640
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V ++S +K V+ +K +++VQ G MK D+
Sbjct: 641 ------------GDEVLLASINQKVIVLSKPDNKGDVLVQAGIMKITANIKDL 681
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 141/303 (46%), Gaps = 20/303 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQ-KHGS 111
S++VLE++K+ + ++ T ++ + L + Y+ L+ET A ++ G+
Sbjct: 5 SIKVLEFNKIQEILKNYTCTKAAKD-IIEDLKPYDSMYE-VREHLEETKEAFKLLITKGA 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ GV ++S I + S L P + L + A+L+ + + + +E++
Sbjct: 63 PPFE--GV--YDIRSGISLAEKGSALLPGQLLKIAAVLRCARRFKEYINHKEEEES---- 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ L + +F + + I ++ + I D AS L R + L+ K Y + D
Sbjct: 115 -YRVLENICEGIFSLPKIEEEIFNAIEGEDEIADRASSTLYNIR---RSLKEKNYSVRDK 170
Query: 232 LIRNENNESLFLE--VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+ + S +L+ + ++ G R + A+ + + GL+ SS+G IEP+S V L
Sbjct: 171 INSLVRSYSSYLQENIYTVRGDRYVLPVKAEHKGAVPGLVHDQSSTGATLFIEPMSLVNL 230
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+E+++ E +L L+ K+ ++ ++ N + +LD + A+A ++ + T
Sbjct: 231 NNEIKELMLKEKAEIERILTVLSAKINANITGVKTDANIVWELDFIFAKAKFASEYNCTC 290
Query: 347 PNI 349
P I
Sbjct: 291 PTI 293
>gi|389855931|ref|YP_006358174.1| DNA mismatch repair protein [Streptococcus suis ST1]
gi|353739649|gb|AER20656.1| DNA mismatch repair protein [Streptococcus suis ST1]
Length = 777
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 151/223 (67%), Gaps = 5/223 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
+A PVP D++ + +VITGPNTGGKTI LKT+GL +MA+SGL IL+ + ++V F
Sbjct: 307 IAKPVPNDLYFGSQLTAIVITGPNTGGKTITLKTLGLTHLMAQSGLPILADKGSRVAIFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I++++ SL+L DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHTVQILAEADQDSLILFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
L+ G + T+ATTH+ ELK ENA MEFD L+PTYK + GVPGRS+A
Sbjct: 427 LDDLRLRG-IKTMATTHYPELKAYGIETSGIENASMEFDTNSLRPTYKFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
IA RLGL I++Q+A Q + +++N +I E+ ++Q +E
Sbjct: 486 EIARRLGLSDIIIQSA-QSWTDTDSDVNRII---EKLESQTVE 524
>gi|358464134|ref|ZP_09174101.1| MutS2 family protein [Streptococcus sp. oral taxon 058 str. F0407]
gi|357067310|gb|EHI77434.1| MutS2 family protein [Streptococcus sp. oral taxon 058 str. F0407]
Length = 778
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 139/389 (35%), Positives = 216/389 (55%), Gaps = 46/389 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V D+ ++ +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVRHPLVKNAVANDVHFGKELTAIVITGPNTGGKTIMLKTLGLTQLMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LEA + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEAL-RFRQVKTMATTHYPELKAYGIETAFVQNASMEFDTASLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSDVIVGDASQQVNQDN-DVNRIIEQLE-------EQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA L + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVELALSESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K + ++ +KV+ + + V++
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------AELKKLAPEKVD---LSKNKVLQ-- 621
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ K+ P VGD + V S+G++GT+
Sbjct: 622 ----KAKKKRAPKVGDDIVVLSYGQRGTL 646
>gi|223932739|ref|ZP_03624737.1| MutS2 family protein [Streptococcus suis 89/1591]
gi|302023286|ref|ZP_07248497.1| DNA mismatch repair protein [Streptococcus suis 05HAS68]
gi|330832072|ref|YP_004400897.1| DNA mismatch repair protein [Streptococcus suis ST3]
gi|223898572|gb|EEF64935.1| MutS2 family protein [Streptococcus suis 89/1591]
gi|329306295|gb|AEB80711.1| DNA mismatch repair protein [Streptococcus suis ST3]
Length = 777
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 151/223 (67%), Gaps = 5/223 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
+A PVP D++ + +VITGPNTGGKTI LKT+GL +MA+SGL IL+ + ++V F
Sbjct: 307 IAKPVPNDLYFGSQLTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I++++ SL+L DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHTVQILAEADQDSLILFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
L+ G + T+ATTH+ ELK ENA MEFD L+PTYK + GVPGRS+A
Sbjct: 427 LDDLRLRG-IKTMATTHYPELKAYGIETSGIENASMEFDTNSLRPTYKFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
IA RLGL I++Q+A Q + +++N +I E+ ++Q +E
Sbjct: 486 EIARRLGLSDIIIQSA-QSWTDTDSDVNRII---EKLESQTVE 524
>gi|227894663|ref|ZP_04012468.1| MutS family DNA mismatch repair protein [Lactobacillus ultunensis
DSM 16047]
gi|227863558|gb|EEJ70979.1| MutS family DNA mismatch repair protein [Lactobacillus ultunensis
DSM 16047]
Length = 786
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 193/678 (28%), Positives = 307/678 (45%), Gaps = 112/678 (16%)
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
D I + ++ QL V L + + + +D DG + D+AS AL + R + E ++
Sbjct: 111 DDKINLSAIEPILDQLDVPDLLYRELKKSLDYDGEVLDTASNALARLRHDIASNEEEIKN 170
Query: 228 LMDMLIRNENNESLFLEVSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAV 284
M + +++ L ++ +I R I + + F G++ S+SG +EP + +
Sbjct: 171 KMSAYTKGNSSKYLSEQIVTIRDDRYVIPVKQEYRAKFGGVVHDQSASGQTLFVEPEAVL 230
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+ Q A + ++L L+ + +++ + + + +LD + A+A +
Sbjct: 231 NLNNRQQNLIAQEKQEIRNILKHLSSLAREEIESLNNIATALTKLDFLQAKAKLAKEMKA 290
Query: 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLES 404
+ P LTH+ ++ L A HPL+
Sbjct: 291 SEP----------QLTHD------------HSLNLRNARHPLI----------------- 311
Query: 405 ANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPN 464
P ++ VP DI + ++ITGPN
Sbjct: 312 -------------------------DPEKV----------VPNDIRLGGDFDTMLITGPN 336
Query: 465 TGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524
TGGKTI LKT GL +MA+SGL I + E +KV F+ V+ADIGDEQS+ QSLSTFS H+
Sbjct: 337 TGGKTITLKTAGLLQLMAQSGLFIPAEEGSKVGVFEEVYADIGDEQSIEQSLSTFSSHIN 396
Query: 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584
I I+ ++LVL+DEIGAGT+P EG +L +S+L+ F + TTH+ ELK
Sbjct: 397 DIIAIMKNVNKETLVLIDEIGAGTDPEEGASLAISILD-FLRKKDAKIMVTTHYPELKLY 455
Query: 585 KYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644
Y+ NA MEFD L PTY + G+PG S+A IA RLG+ VV+NA+ L
Sbjct: 456 GYNRPRTTNASMEFDLKTLSPTYHLQIGIPGHSNAFAIARRLGMREDVVKNAQNLMSDED 515
Query: 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKI 704
++IN++I ++ N T R LE + + QK+
Sbjct: 516 SDINKMIAKL----------------------NAQTKAATTARNHLETSLDRSEKLEQKL 553
Query: 705 SDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVG-KNQHVLTSN 763
A V K QL + +A ++ KR ++ Q VG K ++ +
Sbjct: 554 QQALDWYNQRVQK---QLDFAQERANEIIAKRRKKADRIIEQLEKQKNVGVKENKIIEAK 610
Query: 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKE 823
+ T+++ + A + V++ R KR NVGD V V S+G+ GT+ K + S+
Sbjct: 611 GELNTLER-QANNLAHNKVLQ------REKRRHHVNVGDQVKVLSYGQTGTITK-KLSEH 662
Query: 824 EIVVQVGNMKWIMKFTDI 841
E VQ+G +K + DI
Sbjct: 663 EYEVQMGIIKAKVSDRDI 680
>gi|387819388|ref|YP_005679735.1| recombination inhibitory protein MutS2 [Clostridium botulinum
H04402 065]
gi|322807432|emb|CBZ05006.1| recombination inhibitory protein MutS2 [Clostridium botulinum
H04402 065]
Length = 788
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 142/413 (34%), Positives = 221/413 (53%), Gaps = 37/413 (8%)
Query: 436 VSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
V +E HP VPI + + + L+ITGPNTGGKT+ LKTVGL +MA SGL I
Sbjct: 299 VDIIEGRHPLIDRREVVPISVKLGEEFTSLMITGPNTGGKTVTLKTVGLIHLMAMSGLMI 358
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ E + + +F++VFADIGDEQS+ QSLSTFS H+K I I+ ++ SLVL DE+GAGT
Sbjct: 359 PARENSVISYFNNVFADIGDEQSIEQSLSTFSSHMKNIVEIMDKADENSLVLFDELGAGT 418
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG AL +S+LE + G+ + IATTH+ ELK + ENA +EFD L+PTY+
Sbjct: 419 DPTEGAALAISILENLRKRGTKI-IATTHYSELKAYALRKEGVENASVEFDVETLRPTYR 477
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
+L G+PG+S+A I++RLGLP ++ AR+ + E+I E + + ++ +A
Sbjct: 478 LLIGIPGKSNAFEISKRLGLPDYIIDFARENISNENIRFEELI---ENLQEKSIKAQEDA 534
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
R L+ N L+ R + ++ +QK+ D A I + A+ + A +
Sbjct: 535 R----LAEN-----LKLERDKEKKKYEEKLEGLQKVRDNALID---ARREAKNIIKEAKE 582
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
+ K +QL S K+ + + L ++++ E +K++K+
Sbjct: 583 EADKILKDIRQLERMGYSSDARRKLEEERKKLKDKLD--SIEEKEIKTVHEGEALKNVKE 640
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V ++S +K V+ +K +++VQ G MK D+
Sbjct: 641 ------------GDEVLLASINQKVIVLSKPDNKGDVLVQAGIMKITANIKDL 681
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 141/303 (46%), Gaps = 20/303 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQ-KHGS 111
S++VLE++K+ + ++ T ++ + L + Y+ L+ET A ++ G+
Sbjct: 5 SIKVLEFNKIQEFLKNYTCTKAAKD-IIEDLKPYDSVYE-VREHLEETKEAFKLLITKGA 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ GV ++S I + S L P + L + A+L+ + + + +E++
Sbjct: 63 PPFE--GV--YDIRSGISLAEKGSALLPGQLLKIAAVLRCARRFKEYINHKEEEES---- 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ L + +F + + I ++ + I D AS L R + L+ K Y + D
Sbjct: 115 -YRVLENICEGIFSLPKIEEEIFNAIEGEDEIADRASSTLYNIR---RSLKEKNYSVRDK 170
Query: 232 LIRNENNESLFLE--VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+ + S +L+ + ++ G R + A+ + + GL+ SS+G IEP+S V L
Sbjct: 171 INSLVRSYSSYLQENIYTVRGDRYVLPVKAEHKGAVPGLVHDQSSTGATLFIEPMSLVNL 230
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+E+++ E +L L+ K+ ++ ++ N + +LD + A+A ++ + T
Sbjct: 231 NNEIKELMLKEKAEIERILTVLSAKINANITGVKTDANIVWELDFIFAKAKFASEYNCTC 290
Query: 347 PNI 349
P I
Sbjct: 291 PTI 293
>gi|417992328|ref|ZP_12632689.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
CRF28]
gi|410534012|gb|EKQ08677.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
CRF28]
Length = 786
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 224/396 (56%), Gaps = 49/396 (12%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI + K + +VITGPNTGGKTI LKT+GL +M +SGL I + + +++ FD VFADIG
Sbjct: 319 DIPLGDKYQAMVITGPNTGGKTITLKTLGLLQLMGQSGLFIPADDESRIGIFDEVFADIG 378
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ Q+LSTFS H+ I +I+ Q + SLVL DE+GAGT+P EG AL +++L+A E
Sbjct: 379 DEQSIEQNLSTFSAHMDNIVHILKQLSQNSLVLFDELGAGTDPQEGAALAIAILDAVGEV 438
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L+PTY++L GVPGRS+A +I+ RLG
Sbjct: 439 GAYV-VATTHYPELKLYGYNTAKTINASMEFDSKTLQPTYRLLVGVPGRSNAFDISARLG 497
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
LP ++V+ A+ + + S E+N +I ++E+ + AR L ++++H L +
Sbjct: 498 LPSVIVERAKSMISSDSHELNNMISDLEKQRKAAETAYEAARRQLADAQSVHDELAAAYK 557
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
K ++R ++Q+ D A SLV K A++ K +QLR
Sbjct: 558 KF----TTERDAQLQQAKDKA---NSLVDK-----------AQTKADKIIKQLR-----Q 594
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP---------RVKRTELP 798
+ T G TV E+ A+ + +K + Q R + +
Sbjct: 595 MQLTNPG-------------TVK--ENQLIAAKTALKQLHQDEPLQKNRILRREREKQAL 639
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+VGD V V+S+ + GT+++ + K+ VQ+G +K
Sbjct: 640 HVGDEVKVASYDQTGTLLE-QFDKKHWQVQLGILKM 674
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 106/251 (42%), Gaps = 27/251 (10%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL---LDETNAAIEMQKHG 110
L+ LE+DK+ ++ T+ GR QL Q D + + LDET G
Sbjct: 6 LKTLEYDKIQQALLGQVVTANGR-----QLVQAMQPLTDPVAVQQALDET-------ADG 53
Query: 111 SCSLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED 166
+ +L L G L + A++ V + L E ++ +LQ + L D
Sbjct: 54 ASALRLKGGIPVPQLENIDPALKRVDIGAVLNGQELASISRVLQTVSAIDKFL-----TD 108
Query: 167 ADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
I F L + L V L + + VD DG++ D ASP L R Q++ +E ++
Sbjct: 109 LQDQIDFRQLYTLQESLTVLPQLSRRLKTAVDPDGTLTDEASPQLHGVREQIKSIEGEIR 168
Query: 227 QLMDMLIRNENNESLFLEVSSIH-GRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSA 283
M R ++ L + +I R I A+ + G ++ S G IEP +
Sbjct: 169 GKMTNYTRGAQSKYLSDPIVTIRDDRYVIPVKAEYRAKFGGVVHDQSATGQTLFIEPQAI 228
Query: 284 VPLNDELQQAR 294
V LN+ L++A+
Sbjct: 229 VALNNRLREAQ 239
>gi|149183061|ref|ZP_01861514.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. SG-1]
gi|148849242|gb|EDL63439.1| recombination and DNA strand exchange inhibitor protein [Bacillus
sp. SG-1]
Length = 786
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/406 (35%), Positives = 223/406 (54%), Gaps = 39/406 (9%)
Query: 443 HPV-PIDIFIARKTRV------LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAK 495
HP+ PID +A + +VITGPNTGGKT+ LKT+GL +MA+SGL I + + ++
Sbjct: 310 HPMLPIDEAVANDIELGKDFSSIVITGPNTGGKTVTLKTIGLLTLMAQSGLQIPALDGSE 369
Query: 496 VPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555
+ F +V+ADIGDEQS+ QSLSTFS H+ I +I+ + +SLVL DE+GAGT+P EG A
Sbjct: 370 MGVFQNVYADIGDEQSIEQSLSTFSSHMVNIVDILGKVDHESLVLFDELGAGTDPQEGAA 429
Query: 556 LGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPG 615
L +S+L+ + G+ + +ATTH+ ELK Y+ D NA +EFD L PTYK+L GVPG
Sbjct: 430 LAISILDEVHQRGAKV-VATTHYPELKAYGYNRDGVVNASVEFDVETLSPTYKLLIGVPG 488
Query: 616 RSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLS 675
RS+A I++RLGL V+ A+ G S EI +I +E+ + EA L +
Sbjct: 489 RSNAFEISKRLGLADRVIDRAKSHIGTDSKEIENMIASLEKSRKDAEADYDEAHELLKQA 548
Query: 676 RNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHK 735
+HK++ +++++E + K + + A + A Q+ A + V +
Sbjct: 549 EMMHKDM---QKQMMEF-----YEKRDSLYEKAEV-------KASQVVEKAKEEAEGVIR 593
Query: 736 RAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT 795
+++R S + +H L ++ A + K K + KR
Sbjct: 594 DLRKMRLEKSAEI-------KEHELIDARKRI------EGAAPELNRSKPKKTNASQKRE 640
Query: 796 ELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
P GD V V SF +KG +++ + SK E VQ+G MK +K +D+
Sbjct: 641 LKP--GDEVKVLSFDQKGHLVE-KVSKNEWQVQMGIMKMKVKESDL 683
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 158/318 (49%), Gaps = 18/318 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA---IEMQKHG 110
LR LE++K+ ++ FA ++LGR A + L + T ++ +R+ +ET+ A + M+ H
Sbjct: 6 LRTLEFNKVKELLAGFAASALGR-AKVEGLQP-STTLEEVIRIQEETDEAASILRMKGHA 63
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
L G+ ++ A++ L P E + V + ++ S +L + +
Sbjct: 64 P----LGGI--FDIRPAVKRATIGGMLGPQEFVQVASTIRASRQFRLFMEDLE---EEEE 114
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+ LT+ + Q+ V L I VVDE+G+I DSAS +L+Q R Q++ E ++ + ++
Sbjct: 115 LELPILTEKVSQMAVLTPLEHKIKAVVDENGAILDSASDSLRQIRSQIRANEGRIREKLE 174
Query: 231 MLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPL 286
+IR+ N + + + ++ + R I + G ++ SSSG IEP V L
Sbjct: 175 RMIRSSNAQKMLSDAIITIRNDRYVIPVKQEYRGNYGGIIHDQSSSGQTLFIEPEVIVSL 234
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+ L++ + + E +L LT ++ V +++ +++ + +D + +A Y S GT
Sbjct: 235 NNALRELKLKEGQEIEKILTELTVEVSVFSEDLLTIVSVLADIDFMFTKAKYGKSIKGTK 294
Query: 347 PNIFLPQDMKRSLTHEPV 364
P I Q +K + P+
Sbjct: 295 PEINGNQVLKLNRARHPM 312
>gi|332653476|ref|ZP_08419221.1| DNA mismatch repair protein MutS [Ruminococcaceae bacterium D16]
gi|332518622|gb|EGJ48225.1| DNA mismatch repair protein MutS [Ruminococcaceae bacterium D16]
Length = 789
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 199/673 (29%), Positives = 319/673 (47%), Gaps = 106/673 (15%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HG 110
+S+ LE ++ +S+ A T G+E L QL + D R +ET+AA++M G
Sbjct: 7 KSMITLELPRVLEQLSACAATQEGKEKAL-QLRPMTD-LDDVQRAQEETSAAVKMLVLRG 64
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
S L +GV V + + L E L V A+L+ + T KE D
Sbjct: 65 SPGL--SGV--KPVGAILHRADMGGSLNTRELLEVAAVLRCART--------AKEYGDSE 112
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
+ P++ + L NR L +I + + + DSAS L R ++ E K+ ++
Sbjct: 113 EK-TPISHLFHALTPNRFLEDTITNSIVGEDELADSASSELASIRRHMRATEAKVRDILQ 171
Query: 231 MLIRNENNESLFLEVSSI---HGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
LI +N+S +L+ S I R + ++ + + GL+ S+SG IEP+ V
Sbjct: 172 KLI--SSNQSKYLQESIITIRSDRYVVPVKSEHKNAIPGLVHDVSASGSTFFIEPMGVVK 229
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
N+EL++ A K E +L L+ + ++I + ++ LD + AR
Sbjct: 230 ANNELRELLAKEKKEIERILAELSAQCAAHKEDILEDYQLLVWLDGIFARGQL------- 282
Query: 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESA 405
SL E K+S + + L KA HPLL K+K
Sbjct: 283 ------------SLKMEGSQPKLS----DKYLRLRKARHPLL---DKKKA---------- 313
Query: 406 NTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNT 465
VP D+ + L+ITGPNT
Sbjct: 314 ---------------------------------------VPNDLELGDTFDTLMITGPNT 334
Query: 466 GGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQ 525
GGKT+ LKT+GL +MA+ GLHI + + V FD V +DIGDEQS++QSLSTFS H+
Sbjct: 335 GGKTVTLKTIGLITLMAQCGLHIPAGADSTVRIFDRVLSDIGDEQSIAQSLSTFSSHMTN 394
Query: 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585
I I+ ++ ++L+LLDE+GAGT+P+EG AL +++E+ G+ + ATTH+ ELK
Sbjct: 395 IVGILEEADDRTLILLDELGAGTDPVEGAALAAAIIESARGMGAAVA-ATTHYAELKVYA 453
Query: 586 YSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASA 645
+ ENA EF+ L PTY+++ G+PG+S+A I+ RLGLP +++ A A +
Sbjct: 454 MTTPGVENASCEFNVETLAPTYRLILGIPGKSNAFAISRRLGLPEYIIEKAAARLDAENV 513
Query: 646 EINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKIS 705
+V+ +++ + + EA+ L L + R R+ LE ++R + V+K
Sbjct: 514 RFEDVLTRLDQQRQEMEAERAEAKR-LKLEMEQSASKAREYREKLE---AERAKVVEK-- 567
Query: 706 DAAAIARSLVHKS 718
A A AR+++ ++
Sbjct: 568 -AQAEARAIIEEA 579
>gi|257126841|ref|YP_003164955.1| MutS2 family protein [Leptotrichia buccalis C-1013-b]
gi|257050780|gb|ACV39964.1| MutS2 family protein [Leptotrichia buccalis C-1013-b]
Length = 779
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 144/466 (30%), Positives = 240/466 (51%), Gaps = 85/466 (18%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
I + ++++G +KD AS L+ R Q Q + + + D LI N++ ++ E ++ +
Sbjct: 133 ISEAINDEGVLKDEASIGLRDVRRQKQNINANIKEKFDELISNKSTQNAIQERIITQRND 192
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R I D FKGL+ S++G IEPL+ V LN++L++ A + +L
Sbjct: 193 RYVIAVKTD---FKGLIKGIEHDRSATGSTVYIEPLNVVSLNNKLREYEAREREEIRKIL 249
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVT 365
L LTE ++ +EI ++ + +LD ++A+ TYS++ P I + +K
Sbjct: 250 LRLTELVKTKKEEILEIKEILERLDFIDAKTTYSVNKKCIVPKIINKEYLK--------- 300
Query: 366 SKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEK 425
L +A HPL+ G N
Sbjct: 301 -------------LVEARHPLI----------------------------GENT------ 313
Query: 426 DTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG 485
+ P EL +P I ++ITGPNTGGKT+ LK GL +MA SG
Sbjct: 314 ---VVPIN-----FELGNPENI----------MLITGPNTGGKTVTLKVAGLLTIMALSG 355
Query: 486 LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIG 545
+ I ++E ++ +F +V ADIGDEQSL Q+LS+FSGH+ +I +II + S+SLVL+DE+G
Sbjct: 356 IPIPANEKTEIGYFHNVLADIGDEQSLEQNLSSFSGHVSKIKDIIENANSKSLVLMDELG 415
Query: 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKP 605
+GT+P+EG A M++++ + + +I TTH+ E+K ++ ++A MEF+ L P
Sbjct: 416 SGTDPMEGAAFAMAIID-YLNKKHVTSIITTHYSEVKAYAFNTTGIKSASMEFNVETLSP 474
Query: 606 TYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI 651
TY++L G+PG S+A+ IA + G+ V++NA+ + + E++
Sbjct: 475 TYRLLEGIPGESNALIIARKYGISEEVIENAKSYISEDNQRVEEML 520
>gi|229032198|ref|ZP_04188171.1| hypothetical protein bcere0028_42400 [Bacillus cereus AH1271]
gi|228728978|gb|EEL79981.1| hypothetical protein bcere0028_42400 [Bacillus cereus AH1271]
Length = 786
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 143/400 (35%), Positives = 220/400 (55%), Gaps = 37/400 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+R+I+E +R K+ K K ++ +A + + + +QLR +
Sbjct: 555 -QRQIIEFN-DERDEKLLK-----------AQKEGEEKVEAAKKEAEGIIQELRQLRKAQ 601
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPNVG 801
L + ++ A+ +VK KQ VK T + G
Sbjct: 602 ---------------LINVKDHELIEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLRAG 644
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
D V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 645 DEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + G+
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGN 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LATHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|423521564|ref|ZP_17498037.1| MutS2 protein [Bacillus cereus HuA4-10]
gi|401177766|gb|EJQ84953.1| MutS2 protein [Bacillus cereus HuA4-10]
Length = 786
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 142/402 (35%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ Q+LSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQNLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + EA S LH+ L
Sbjct: 497 RLGLSDRVIDRARNHISTDTNKIENMIAKLEESQKSAEHERKEAEEHRKQSEKLHREL-- 554
Query: 685 TRRKILEHC--ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E ++ K QK + +++ + +A ++H+ +QLR
Sbjct: 555 -QRQIIEFNDERDEKLLKAQK-------------EGEEKVEAAKKEAEGIIHE-LRQLRK 599
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
+ L + ++ A+ +VK KQ VK T +
Sbjct: 600 AQ---------------LVNVKDHELIEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 147/302 (48%), Gaps = 19/302 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA---IEMQKH 109
+LRVLE++K+ + +SLGR+ + S + +++ + L + T+ A I ++ H
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVELQETTDEAAKVIRLKGH 62
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ L G+ S ++S ++ + S L P+E + + + + S ++ I++ A+
Sbjct: 63 ----VPLGGI--SDIRSNVKRAKIGSMLSPHELIEIASTMYGSR----QMKRFIEDMAEN 112
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + +
Sbjct: 113 GVELPILEGHVAQIISLYDLEKKITNCIGDGGEVVDSASDKLRGIRNQIRTAESRIREKL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVP 285
+ + R+ N + + + V+ + R I + G ++ S+SG IEP V
Sbjct: 173 ENMTRSSNAQKMLSDAIVTIRNDRYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVE 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ LQ+AR + E +L+ LTE++ V+ D + + + LD + A+A Y+ T
Sbjct: 233 LNNALQEARVKEKQEVERILMMLTEEVAVEADIVLSNVEVVANLDFIFAKALYAKRIKAT 292
Query: 346 SP 347
P
Sbjct: 293 KP 294
>gi|153940847|ref|YP_001392400.1| recombination and DNA strand exchange inhibitor protein
[Clostridium botulinum F str. Langeland]
gi|384463373|ref|YP_005675968.1| MutS2 family protein [Clostridium botulinum F str. 230613]
gi|189030427|sp|A7GHZ0.1|MUTS2_CLOBL RecName: Full=MutS2 protein
gi|152936743|gb|ABS42241.1| MutS2 family protein [Clostridium botulinum F str. Langeland]
gi|295320390|gb|ADG00768.1| MutS2 family protein [Clostridium botulinum F str. 230613]
Length = 788
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 143/417 (34%), Positives = 223/417 (53%), Gaps = 37/417 (8%)
Query: 432 SEMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKS 484
+E V +E HP VPI + + + L+ITGPNTGGKT+ LKTVGL +MA S
Sbjct: 295 NEGIVDIIEGRHPLIDRREVVPISVKLGEEFTSLMITGPNTGGKTVTLKTVGLIHLMAMS 354
Query: 485 GLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEI 544
GL I + E + + +F++VFADIGDEQS+ QSLSTFS H+K I I+ ++ SLVL DE+
Sbjct: 355 GLMIPARENSVISYFNNVFADIGDEQSIEQSLSTFSSHMKNIVEIMDKADENSLVLFDEL 414
Query: 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLK 604
GAGT+P EG AL +S+LE + G+ + IATTH+ ELK + ENA +EFD L+
Sbjct: 415 GAGTDPTEGAALAISILENLRKRGTKI-IATTHYSELKAYALRKEGVENASVEFDVETLR 473
Query: 605 PTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEH 664
PTY++L G+PG+S+A I++RLGLP ++ AR+ + E+I E + + ++
Sbjct: 474 PTYRLLIGIPGKSNAFEISKRLGLPDYIIDFARENISNENIRFEELI---ENLQEKSIKA 530
Query: 665 VHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCP 724
+AR L+ N L+ R + ++ +QK+ D A I + A+ +
Sbjct: 531 QEDAR----LAEN-----LKLERDKEKKKYEEKLEGLQKVRDNALID---ARREAKNIIK 578
Query: 725 SASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVK 784
A + + K +QL S K+ + + L ++++ E +K
Sbjct: 579 EAKEEADKILKDIRQLERMGYSSDARRKLEEERKKLKDKLD--SIEEKEIKTVHKGEALK 636
Query: 785 DIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
++K+ GD V ++S +K V+ +K +++VQ G MK D+
Sbjct: 637 NVKE------------GDEVLLASINQKVIVLSKPDNKGDVLVQAGIMKITANIKDL 681
Score = 46.2 bits (108), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 138/302 (45%), Gaps = 18/302 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSC 112
S++VLE++K+ + ++ T ++ + L + Y+ L + A + G+
Sbjct: 5 SIKVLEFNKIQEILKNYTCTKAAKD-IIEDLKPYDSVYEVREHLEEAKEAFKLLITKGAP 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR 172
+ GV +++ I + S L P + L + A+L+ + + + +E++
Sbjct: 64 PFE--GV--YDIRNGIYLAEKGSALLPGQLLKIAAVLRCARRFKEYINHKEEEES----- 114
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
+ L + +F + + I ++ + I D AS L R + L+ K Y + D +
Sbjct: 115 YRVLENICEGIFSLPKIEEEIFNAIEGEDEIADRASSTLYNIR---RSLKEKNYSVRDKI 171
Query: 233 IRNENNESLFLE--VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLN 287
+ S +L+ + ++ G R + A+ + + GL+ SS+G IEP+S V LN
Sbjct: 172 NSLVRSYSSYLQENIYTVRGDRYVLPVKAEHKGAVPGLVHDQSSTGATLFIEPMSLVNLN 231
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+E+++ E +L L+ K+ ++ ++ N + +LD + A+A ++ + T P
Sbjct: 232 NEIKELMLKEKAEIERILTVLSAKINANITGVKTDANIVWELDFIFAKAKFASEYNCTCP 291
Query: 348 NI 349
I
Sbjct: 292 TI 293
>gi|423519234|ref|ZP_17495715.1| MutS2 protein [Bacillus cereus HuA2-4]
gi|401159591|gb|EJQ66974.1| MutS2 protein [Bacillus cereus HuA2-4]
Length = 786
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 219/400 (54%), Gaps = 37/400 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ Q+LSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQNLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ D NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNRDQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + EA S LH+ L
Sbjct: 497 RLGLSDRVIDRARNHISTDTNKIENMIAKLEESQKNAERERKEAEEHRKQSEKLHREL-- 554
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+R+I+E +R K+ K K ++ +A Q + + +QLR +
Sbjct: 555 -QRQIIEFN-DERDEKLLK-----------AQKEGEEKVEAAKQEAEGIIQELRQLRKAQ 601
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPNVG 801
L + ++ A+ +VK KQ VK T + G
Sbjct: 602 ---------------LINVKDHELIEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLRAG 644
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
D V V +FG+KG ++K + S E VQ+G +K +K +++
Sbjct: 645 DEVKVLTFGQKGQLLK-KVSDTEWSVQIGILKMKVKESNM 683
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 145/302 (48%), Gaps = 19/302 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA---IEMQKH 109
+LRVLE++K+ + +SLGR+ + S + +++ + L + T+ A I ++ H
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVELQETTDEAAKVIRLKGH 62
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ L G+ S ++S I+ + S L P+E + + + + S ++ + I +L
Sbjct: 63 ----VPLGGI--SDIRSNIKRAKIGSMLSPHELIEIASTMYGSRQMKRFIDDMIDNGVEL 116
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + +
Sbjct: 117 PI----LETHVAQIVSLYDLEKKITNCIGDSGEVVDSASDKLRGIRNQIRTAESRIREKL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVP 285
+ + R+ N + + V+ + R I + G ++ S+SG IEP V
Sbjct: 173 ENMTRSSNAPKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVE 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ LQ+AR + E +L+ LTE++ V+ D + + + LD + A+A Y+ T
Sbjct: 233 LNNALQEARVKEKQEVERILMMLTEEVAVEADIVLSNVEVVANLDFIFAKALYAKRIKAT 292
Query: 346 SP 347
P
Sbjct: 293 KP 294
>gi|421487811|ref|ZP_15935209.1| MutS2 family protein [Streptococcus oralis SK304]
gi|400369773|gb|EJP22770.1| MutS2 family protein [Streptococcus oralis SK304]
Length = 778
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 216/391 (55%), Gaps = 46/391 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V D+ ++ +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVRHPLVKNAVANDVHFGKELTAIVITGPNTGGKTIMLKTLGLTQLMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADKGSRVGVFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIETSFVQNASMEFDTATLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSDVIVGDASQQVNQDN-DVNRIIEQLE-------EQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA L + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVELALSESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K + ++ +KV+ + + V++
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------AELKKLAPEKVD---LSKNKVLQ-- 621
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTVIK 817
+ K+ P VGD + V S+G++GT+ K
Sbjct: 622 ----KAKKKRAPKVGDDIVVLSYGQRGTLTK 648
>gi|333397059|ref|ZP_08478872.1| DNA mismatch repair protein MutS2 [Leuconostoc gelidum KCTC 3527]
gi|406600446|ref|YP_006745792.1| DNA mismatch repair protein MutS2 [Leuconostoc gelidum JB7]
gi|406371981|gb|AFS40906.1| DNA mismatch repair protein MutS2 [Leuconostoc gelidum JB7]
Length = 801
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 179/614 (29%), Positives = 278/614 (45%), Gaps = 105/614 (17%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGR----------EATLTQLWSINQTYQDSLRLLDETNAA 103
L+ LE+DK+ +S F T +GR + + W + D + L+D
Sbjct: 6 LQTLEYDKIKSQLSGFLSTPVGRLEADKLHPETDVNIINYWLLETA--DGV-LIDRLKGG 62
Query: 104 IEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI 163
I + K + L +++S SA + LR A+A E + SL+
Sbjct: 63 IPLAKLADITPHLKRLNISASLSATELSEIGTVLRNTTAIANFFGQMTDEIIGESLKV-- 120
Query: 164 KEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLER 223
L + +L V + + I +D G I D AS LK RG++ E
Sbjct: 121 ------------LPEQAEKLAVLSDVTRQIEIAIDATGRINDEASFDLKSIRGKITGNEH 168
Query: 224 KLYQLMDMLIRNENNESLFLEVSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEP 280
+ M R ++ + L + +I R + A+ + G ++ S G IEP
Sbjct: 169 AVKNKMQSYTRGKSAQYLSDPIITIRAERYVLPVKAEYRNQFGGVVHDQSQTGQTLYIEP 228
Query: 281 LSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
+ V LN++L + R E+ VL L+ ++ +EI + +N + D +NA++ +
Sbjct: 229 QAVVELNNKLSELRVKEQVEEQHVLQLLSSALEPYTNEIAQNVNILGHFDFINAKSRLAA 288
Query: 341 SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWK 400
P + + E + L +A+HPLL K
Sbjct: 289 RLDAMQPVVNI----------------------ENHVDLQQAWHPLL-----------EK 315
Query: 401 DLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVI 460
+ AN DI + + + ++I
Sbjct: 316 KIAVAN-----------------------------------------DIALGDQYKSIII 334
Query: 461 TGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520
TGPNTGGKTI +KT+GL +MA+SGL I + + V F +FADIGDEQS+ QSLSTFS
Sbjct: 335 TGPNTGGKTITIKTLGLLQLMAQSGLFITTKRPSTVGVFHEIFADIGDEQSIEQSLSTFS 394
Query: 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580
H+ I ++I S SLV+ DE+GAGT+P EG AL +++L+ A G + IATTH+ E
Sbjct: 395 SHMANIISMIDDIDSNSLVIFDELGAGTDPAEGAALAIAILDKVASLGGYV-IATTHYPE 453
Query: 581 LKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640
LK Y+ NA M FD LKPTY+ L GVPG+S+A+ IA+RLGL V+ A L
Sbjct: 454 LKLYGYNRPETLNASMVFDVETLKPTYQFLMGVPGQSNALAIAKRLGLGEDVIGAATALT 513
Query: 641 GAASAEINEVIIEM 654
+ ++N++I+++
Sbjct: 514 DESDQDLNDMIVDL 527
>gi|427702746|ref|YP_007045968.1| MutS2 family protein [Cyanobium gracile PCC 6307]
gi|427345914|gb|AFY28627.1| MutS2 family protein [Cyanobium gracile PCC 6307]
Length = 820
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 163/495 (32%), Positives = 238/495 (48%), Gaps = 89/495 (17%)
Query: 177 TQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNE 236
T ++ +L L + + ++E G + D AS L+ R Q+ L + + L+R
Sbjct: 125 TALVAELRTLPELEQRLHFCLEEGGRVADRASGPLEAVRRQLLALRAERRDRLQELVRRY 184
Query: 237 NNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSVI--EPLSAVPLNDELQQAR 294
+ VS GR + A + G L+ SS GS + EP + +PL + ++ A
Sbjct: 185 GSLLQDTVVSERGGRPVLAVKAGAAAQVGGLVHDSSASGSTVYVEPQAVIPLGNRIRDAE 244
Query: 295 ASVTKAEEDV---LLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFL 351
+ E V L AL + LD ++++L +++D ARA Y G P +
Sbjct: 245 GQERELERQVRSELSALVGEQAEPLDHLQQVL---VRIDAGLARARYGQWLGAVRPELAD 301
Query: 352 PQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRR 411
D L HPLLL Q +++
Sbjct: 302 SADA--------------------PFELCDLRHPLLLWQERRE----------------- 324
Query: 412 RKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTIC 471
GG VP+ I + + RV+ ITGPNTGGKT+
Sbjct: 325 ----GGRPV------------------------VPVTIRVGPELRVVAITGPNTGGKTVT 356
Query: 472 LKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS 531
LK++GLA +MA++GL + + ++PW V ADIGDEQSL Q+LSTFSGH+++I I++
Sbjct: 357 LKSLGLAALMARAGLFLPCAGTPRLPWCGQVLADIGDEQSLQQNLSTFSGHIRRIARILA 416
Query: 532 --------------QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577
SLVLLDE+GAGT+P EG+AL +LL A+ + LT+ATTH
Sbjct: 417 ALPAGAGFPEGAALPQGPASLVLLDEVGAGTDPTEGSALAAALLRHLADR-ARLTVATTH 475
Query: 578 HGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGL-PGIVVQNA 636
GELK LKY++ FENA + FD L PTY++ WG+PGRS+A+ IA RLGL P ++ A
Sbjct: 476 FGELKALKYADPRFENASVAFDVETLSPTYRLQWGIPGRSNALAIASRLGLDPAVLAVAA 535
Query: 637 RQLYGAASAEINEVI 651
QL ++N VI
Sbjct: 536 AQLEPGGEGDVNRVI 550
>gi|297588543|ref|ZP_06947186.1| MutS2 protein [Finegoldia magna ATCC 53516]
gi|297573916|gb|EFH92637.1| MutS2 protein [Finegoldia magna ATCC 53516]
Length = 783
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 146/219 (66%), Gaps = 1/219 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI I++ LVITGPNTGGKT+ LKTVGL +MA+SG+ I E ++V FD++F
Sbjct: 316 VPISIYLGDDYNTLVITGPNTGGKTVTLKTVGLITLMAQSGILIPVDENSEVAIFDNIFT 375
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+K I +I++ T SLVL DE+GAGT+P EG AL +++L F
Sbjct: 376 DIGDEQSIEQSLSTFSAHMKNIVHIVNNITFNSLVLFDELGAGTDPTEGAALAIAILRIF 435
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ S+ TIATTH+ +LK + + +N +EFD L PTYK+ G+PG+S+A I+
Sbjct: 436 LDK-SIRTIATTHYSQLKIFALTEKYVKNGSVEFDVNTLSPTYKLRIGIPGKSNAFEISR 494
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
RLGL ++ NA+++ + +V+ ++E K Q E
Sbjct: 495 RLGLDDDIINNAKEILSQEDKDFEDVLSDIESEKKQIDE 533
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 145/305 (47%), Gaps = 21/305 (6%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL-LDETNAAIEM-QKH 109
++L LE+D++ + + ++ LG+ + +L + + +D +R LDET A+ M K
Sbjct: 4 KTLNTLEYDEIKNKIEKLCKSKLGK-SIANKLEPMIE--EDEIRQSLDETYEAMSMIYKF 60
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ + ++ VK++I V + + P L + +L ++ R A + D +
Sbjct: 61 SNPPI----YEIINVKASIMHVSKGGYIVPEVLLKIGQILSSVHDIK---RYAGESDEN- 112
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ + + M+ L L+ +I + + I D+AS L + R Q +K +
Sbjct: 113 HENYPMIMAMMDSLVEEPDLVATINNAIISEDEISDNASRNLARIR---QTKRQKTENIR 169
Query: 230 DML--IRNENNESLFLEVSSIHG-RLCIRTG-ADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
D + I + N+++L + ++ R I + + SFKG++ SSSG IEP+ V
Sbjct: 170 DKINSILSSNDQALQENIVTMRDDRYVIPVKVSHKSSFKGIVHDHSSSGQTVYIEPMEVV 229
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+EL+ A + +L +++++ D I + + +LD + A+A Y++
Sbjct: 230 ELNNELRMLEAEEREEIIRILKEISDRVYDAKDSIFVDQDVLSRLDFIFAKAKYAIEIDA 289
Query: 345 TSPNI 349
T+P +
Sbjct: 290 TNPKL 294
>gi|373857569|ref|ZP_09600310.1| MutS2 family protein [Bacillus sp. 1NLA3E]
gi|372452701|gb|EHP26171.1| MutS2 family protein [Bacillus sp. 1NLA3E]
Length = 785
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 149/410 (36%), Positives = 220/410 (53%), Gaps = 45/410 (10%)
Query: 443 HP-VPIDIFIARKTRV------LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAK 495
HP +PID +A + +VITGPNTGGKT+ LKTVGL +MA++GL + + + ++
Sbjct: 309 HPLIPIDEVVANDITIGIDFSTIVITGPNTGGKTVTLKTVGLCTLMAQAGLQVPAFDGSE 368
Query: 496 VPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555
+ FD V+ADIGDEQS+ QSLSTFS H+ I +I+ + S SLVL DE+GAGT+P EG A
Sbjct: 369 MAVFDEVYADIGDEQSIEQSLSTFSSHMVNIVDILKKVDSNSLVLFDELGAGTDPQEGAA 428
Query: 556 LGMSLL-EAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVP 614
L +S+L E + S + IATTH+ ELK Y+ + NA +EFD L PTYK+L GVP
Sbjct: 429 LAISILDEVYKRSAKV--IATTHYPELKAYGYNREGVSNASVEFDVETLSPTYKLLIGVP 486
Query: 615 GRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLML 674
GRS+A I+ +LGL V++NAR A + +I +I +E + Q E L
Sbjct: 487 GRSNAFEISRKLGLDESVIENARSHVSADTNQIENMISSLEASRRQAEIEQEETNELLRN 546
Query: 675 SRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVH 734
+ LH NL + + RK Q A A +V K + S+A ++
Sbjct: 547 AEKLHDNLQKEMIAFYD-------RKDQMFEKAEDEALEIVEK-------AKSEAEGVI- 591
Query: 735 KRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKR 794
+ L ++ K V + +D + A+ + K +K+SP +
Sbjct: 592 -----------RDLRKMRIEKQAEVK----EHELIDAKKRLEAAAPT--KTVKRSPVKQA 634
Query: 795 TELPN--VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
T+ + GD V V SFG+KG +I + S VQ+G +K ++ D++
Sbjct: 635 TKKHSFTAGDEVKVVSFGQKGLLIN-KTSDHGWQVQIGILKMKVEEEDLI 683
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 159/338 (47%), Gaps = 35/338 (10%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
+RVLE+DK+ + +SLGR+ L S N +++ +R +ET+ A + + +
Sbjct: 6 MRVLEFDKIKEQLLEHVSSSLGRDKGQKLLPSSN--FEEVVRWQEETDEAANVFRL-KGN 62
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRF 173
+ L G+ +++ I+ L NE + V + + S ++ + +ED + I
Sbjct: 63 IPLGGI--FDIRAHIKRAAIGGMLSSNELMQVASTVHVSRQMKRFIEDVAEEDVSIPI-- 118
Query: 174 MPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLI 233
L + Q+ V L +SI +D++G + D AS L+ R Q++ E ++ + +D +I
Sbjct: 119 --LVEFSEQIIVLAELEQSIKMAIDDNGEVLDGASATLRSLRHQLRSKEARVREKLDSMI 176
Query: 234 RNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDE 289
R+ N + + + ++ + R + + S G ++ SSSG IEP S V LN+E
Sbjct: 177 RSSNAQKMLSDALITIRNDRFVLPVKQEYRSHYGGIIHDQSSSGQTLFIEPQSIVELNNE 236
Query: 290 LQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
LQ R + + +L+ LT + +++ ++ + +LD + A+A Y+ + P
Sbjct: 237 LQGIRLKEEQEIQRILIELTAHVAEYQEDLATVVVVLTELDFMFAKARYAKRIKASKP-- 294
Query: 350 FLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
++ H E I+L KA HPL+
Sbjct: 295 --------TMNH------------EGRIFLNKARHPLI 312
>gi|423395169|ref|ZP_17372370.1| MutS2 protein [Bacillus cereus BAG2X1-1]
gi|423406028|ref|ZP_17383177.1| MutS2 protein [Bacillus cereus BAG2X1-3]
gi|401655940|gb|EJS73468.1| MutS2 protein [Bacillus cereus BAG2X1-1]
gi|401660697|gb|EJS78175.1| MutS2 protein [Bacillus cereus BAG2X1-3]
Length = 786
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 221/402 (54%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F +FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKHIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIVEFNEDRDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L V H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQL----VNVKDHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KISDTEWSVQIGILKMKVKESNM 683
Score = 82.4 bits (202), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 145/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LERHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|340751175|ref|ZP_08687998.1| MutS2 protein [Fusobacterium mortiferum ATCC 9817]
gi|340562266|gb|EEO36747.2| MutS2 protein [Fusobacterium mortiferum ATCC 9817]
Length = 778
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 134/420 (31%), Positives = 222/420 (52%), Gaps = 41/420 (9%)
Query: 428 NLSPSEMQVSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVM 480
N++ EM +S ++ HP VP+ I + L+ITGPNTGGKT+ LKT GL +
Sbjct: 292 NINNREM-LSLVDARHPFIPADKIVPLTFEIGKDYNTLLITGPNTGGKTVALKTAGLLTL 350
Query: 481 MAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVL 540
MA SG+ I + E+ + +F V+ADIGDEQS+ QSLS+FS HLK + I+ SLVL
Sbjct: 351 MALSGIPIPAHEHTSIGFFTGVYADIGDEQSIEQSLSSFSAHLKNVQEILESVNKSSLVL 410
Query: 541 LDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600
LDE+G+GT+P+EG+A M++++ + + TTH+ E+K Y+ + E A MEFD
Sbjct: 411 LDELGSGTDPIEGSAFAMAVID-YLRDRKCKSFITTHYSEVKAHGYNEEGIETASMEFDV 469
Query: 601 VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQ 660
L PTY++L G+PG S+A+ IA+RLG+ V++ A+ G + +I ++I ++ K
Sbjct: 470 NTLSPTYRLLIGIPGESNALTIAKRLGVSDEVIEKAKSYIGDDNKKIEKMIANIKE-KAD 528
Query: 661 FLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQ 720
LE + + FL + ++ + ++LE ++ I + K+ +
Sbjct: 529 ELEAMKQQVEFLKAAAQRDRDEYAEKLRVLEKEKNE-------------ILKEAYEKADK 575
Query: 721 QLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASS 780
+ ++A +LV K ++ ++ V K+ ++L S Q
Sbjct: 576 MMKEMQAKAVALVEK----IQKEENKKEDVKNVQKSLNMLRSALQDDR------------ 619
Query: 781 SVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTD 840
K++++ P++ R VGD V V+S + V+K+ KE + VQ G +K + D
Sbjct: 620 --NKNVEEKPKIARKVDYKVGDKVFVNSLNQFANVLKINGGKETVQVQAGILKLEVSMDD 677
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 24/199 (12%)
Query: 185 VNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE 244
V R + I + +D + IKD AS L+ R + L + + D L + F E
Sbjct: 125 VMRGIEDIINKAIDNNKEIKDDASLDLRDIRIHKKTLSMNIKRKFDELFDEPSFAKAFQE 184
Query: 245 --VSSIHGRLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASV 297
++ GR + AD FKGL+ SSSG IEPLS V LN+++++
Sbjct: 185 RIITERDGRSVVPVKAD---FKGLIKGIEHDRSSSGQTVFIEPLSIVALNNKMRELELKE 241
Query: 298 TKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI-------- 349
+ +LL +TE ++ + ++I+ + I+ LD++NARA Y + PNI
Sbjct: 242 KEEIRKILLRITEHVRNNREDIDAVGEAILSLDILNARAVYGIEKNCVIPNINNREMLSL 301
Query: 350 ------FLPQDMKRSLTHE 362
F+P D LT E
Sbjct: 302 VDARHPFIPADKIVPLTFE 320
>gi|423400603|ref|ZP_17377776.1| MutS2 protein [Bacillus cereus BAG2X1-2]
gi|423457214|ref|ZP_17434011.1| MutS2 protein [Bacillus cereus BAG5X2-1]
gi|423478688|ref|ZP_17455403.1| MutS2 protein [Bacillus cereus BAG6X1-1]
gi|401148991|gb|EJQ56474.1| MutS2 protein [Bacillus cereus BAG5X2-1]
gi|401655327|gb|EJS72861.1| MutS2 protein [Bacillus cereus BAG2X1-2]
gi|402426719|gb|EJV58834.1| MutS2 protein [Bacillus cereus BAG6X1-1]
Length = 786
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 223/400 (55%), Gaps = 37/400 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREKVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+R+I+E +R K+ K K ++ +A + + + +QLR
Sbjct: 555 -QRQIIEFN-DERDEKLLK-----------AQKEGEEKVEAAKKEAEGIIRELRQLRK-- 599
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPNVG 801
+Q ++ K+ ++ + K TA V KQ VK T + G
Sbjct: 600 AQLINV----KDHELIEA--------KSRLEGTAPELVK---KQKVNVKNTAPKQQLRAG 644
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
D V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 645 DEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|116628455|ref|YP_821074.1| MutS family DNA structure-specific ATPase [Streptococcus
thermophilus LMD-9]
gi|122266950|sp|Q03IU4.1|MUTS2_STRTD RecName: Full=MutS2 protein
gi|116101732|gb|ABJ66878.1| DNA structure-specific ATPase involved in suppression of
recombination, MutS family [Streptococcus thermophilus
LMD-9]
Length = 783
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 154/230 (66%), Gaps = 5/230 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + ++V F
Sbjct: 307 LINPVANDLRFDEDLTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSRVAIFQ 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + S SLVL+DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHIVEILNTADSNSLVLVDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK ENA MEFD L+PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-QIKTMATTHYPELKAYGIETQHVENASMEFDTATLRPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQ-FLEHVHE 667
IA RLGL I+V+ A L S ++N +I +E + +TQ LEH+ +
Sbjct: 486 EIARRLGLNEIIVKEAENLTDTDS-DVNRIIEQLEAQTVETQKRLEHIKD 534
>gi|423673678|ref|ZP_17648617.1| MutS2 protein [Bacillus cereus VDM062]
gi|401310543|gb|EJS15859.1| MutS2 protein [Bacillus cereus VDM062]
Length = 786
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 143/400 (35%), Positives = 219/400 (54%), Gaps = 37/400 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ Q+LSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQNLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + EA S LH+ L
Sbjct: 497 RLGLSDRVIDRARNHISTDTNKIENMIAKLEESQKNAESERKEAEEHRKQSEKLHREL-- 554
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+R+I+E +R K+ K K ++ +A Q + + +QLR +
Sbjct: 555 -QRQIIE-FNDERDEKLLK-----------AQKEGEEKVEAAKQEAEGIIQELRQLRKAQ 601
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPNVG 801
L + ++ A+ +VK KQ VK T + G
Sbjct: 602 ---------------LINVKDHELIEAKSRLEGAAPELVK--KQKVHVKNTAPKQQLRSG 644
Query: 802 DLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
D V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 645 DEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 145/302 (48%), Gaps = 19/302 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA---IEMQKH 109
+LRVLE++K+ + +SLGR+ + S + +++ + L + T+ A I ++ H
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVELQETTDEAAKVIRLKGH 62
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ L G+ S ++S I+ + S L P E + + + + S ++ + I +L
Sbjct: 63 ----VPLGGI--SDIRSNIKRAKIGSMLSPYELIEIASTMYGSRQMKRFIDDMIDNGVEL 116
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + +
Sbjct: 117 PI----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRNQIRTAESRIREKL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVP 285
+ + R+ N + + + V+ + R I + G ++ S+SG IEP V
Sbjct: 173 ENMTRSSNAQKMLSDAIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVE 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ LQ+AR + E +L+ LTE++ V+ D + + + LD + A+A Y+ T
Sbjct: 233 LNNALQEARVKEKQEVERILMMLTEEVAVEADIVLSNVEVVANLDFIFAKALYAKRIKAT 292
Query: 346 SP 347
P
Sbjct: 293 KP 294
>gi|332298293|ref|YP_004440215.1| MutS2 protein [Treponema brennaborense DSM 12168]
gi|332181396|gb|AEE17084.1| MutS2 protein [Treponema brennaborense DSM 12168]
Length = 870
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 234/470 (49%), Gaps = 63/470 (13%)
Query: 419 AARKG--EKDTNLSPSEMQVSALELAHP------VPIDIFIARKTRVLVITGPNTGGKTI 470
AAR G +K + +E Q ++ HP VPID+ + RVL+ITGPNTGGKT+
Sbjct: 291 AARWGIEQKAVFAADTEAQPVLVQARHPLLGAKAVPIDLAFPKDCRVLIITGPNTGGKTV 350
Query: 471 CLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 530
LKTV L ++ +SG + + E ++P VFADIGDEQSL QSLSTFSGH+K I + +
Sbjct: 351 TLKTVALFTLLNQSGFPVPAKEGTRLPVRTGVFADIGDEQSLDQSLSTFSGHMKNIADTL 410
Query: 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590
+++ S SLVLLDE+G+GT+P EG A+ M++L+A E S + + TTHHG LK Y++
Sbjct: 411 TRADSDSLVLLDELGSGTDPQEGGAIAMAVLDALIEKRSFVLV-TTHHGVLKNYGYTHRA 469
Query: 591 FENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEV 650
NA EFDE L PTY+I G+PG S A++IA R GLP VV A + A+++ +
Sbjct: 470 CVNASAEFDETTLAPTYRIRTGIPGESRALDIARRNGLPPEVVDKAASYLISEQADVSAM 529
Query: 651 I--------------------------------IEMERFKTQFLEHVHEA----RHFLML 674
I ++ R K E HE R FL
Sbjct: 530 IRGLTAKHEAADLLEKQLRQDQQRLREQRRAADLKSLRLKQTEWELAHEGNRETRRFLEE 589
Query: 675 SRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSA--QQLCPSASQARSL 732
SR + +NL+R R+ ++ R V++ +A+++ + + S ++ ++
Sbjct: 590 SRKMLENLVRELRE--GEITREKTRAVKRF--ITELAQNVQERGDLLDEQEESLAREQAA 645
Query: 733 VHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRV 792
+R +Q +A++ H K L + A + D + P
Sbjct: 646 FTEREKQYETAAAKPPHTAK-----KRLKNADAFAAAKSAAQDGQAFGTRTDDSRSLPGF 700
Query: 793 KRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
+ G V S ++GT+++ + K +VQVG+MK +K D+
Sbjct: 701 E------AGTEVLTGSANRRGTLLR-KSGKNSWIVQVGSMKLTLKEKDLT 743
>gi|449115798|ref|ZP_21752258.1| MutS2 protein [Treponema denticola H-22]
gi|448955284|gb|EMB36051.1| MutS2 protein [Treponema denticola H-22]
Length = 818
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 147/469 (31%), Positives = 236/469 (50%), Gaps = 76/469 (16%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
+ +DE+G ++D P+L+ + +++ +E + + M N+ + + G
Sbjct: 138 VFSFIDENGELQDL--PSLRAIKNKIRSIEDDIDKTMRNYFTNDATRQMLQSNLPTVKDG 195
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R I A + +FKG + S SG +EP V N++L A A + +L
Sbjct: 196 RQVI---AVRSNFKGRIPGIIHEYSQSGQTFYLEPEEIVLKNNDLIAAHAEYERELLRLL 252
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVT 365
LT ++ + I++ I +LD V A + ++ S N + SL+H
Sbjct: 253 QDLTAQIAEHTENIKEACEAITKLDCVAAASRWA-----HSNNCVFAGSIDLSLSHS--I 305
Query: 366 SKVSSSEREWT---IYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARK 422
K S + E T YL +A HPLL G +A
Sbjct: 306 DKDGSHDSEGTPLAFYLHQARHPLL-----------------------------GKSA-- 334
Query: 423 GEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMA 482
VPID+ +++ RVL+ITGPNTGGKT+ LKT L ++
Sbjct: 335 ----------------------VPIDLKLSKDDRVLIITGPNTGGKTVSLKTAALFALIN 372
Query: 483 KSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLD 542
++G + + ++P+FD + DIGDEQS+ QSLSTFS H+K + IIS++ +SL++LD
Sbjct: 373 QTGWPVPAGPLTRLPYFDFIACDIGDEQSMDQSLSTFSAHMKNVSEIISRAGDKSLIILD 432
Query: 543 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 602
E+G+GT+P EG A+ M++L+ E + + + TTHHG LK YS + NA +EF++
Sbjct: 433 ELGSGTDPQEGCAIAMAVLDDLLEKKAFVFV-TTHHGALKNYGYSKESCVNASVEFNQNT 491
Query: 603 LKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI 651
L PTY+IL GVPG S A++IA+R GLP +++ A G A+++++I
Sbjct: 492 LSPTYRILMGVPGESHAVDIAKRNGLPEHIIEKAHTYLGNNRADVSDLI 540
>gi|386345470|ref|YP_006041634.1| DNA mismatch repair protein [Streptococcus thermophilus JIM 8232]
gi|387910457|ref|YP_006340763.1| DNA mismatch repair protein [Streptococcus thermophilus MN-ZLW-002]
gi|339278931|emb|CCC20679.1| DNA mismatch repair protein [Streptococcus thermophilus JIM 8232]
gi|387575392|gb|AFJ84098.1| DNA mismatch repair protein [Streptococcus thermophilus MN-ZLW-002]
Length = 783
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 154/230 (66%), Gaps = 5/230 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + ++V F
Sbjct: 307 LINPVANDLRFDEDLTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSRVAIFQ 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + S SLVL+DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHIVEILNTADSNSLVLVDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK ENA MEFD L+PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-QIKTMATTHYPELKAYGIETQHVENASMEFDTATLRPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQ-FLEHVHE 667
IA RLGL I+V+ A L S ++N +I +E + +TQ LEH+ +
Sbjct: 486 EIARRLGLNEIIVKEAENLTDTDS-DVNRIIEQLEAQTVETQKRLEHIKD 534
>gi|322374876|ref|ZP_08049390.1| DNA mismatch repair protein MutS [Streptococcus sp. C300]
gi|321280376|gb|EFX57415.1| DNA mismatch repair protein MutS [Streptococcus sp. C300]
Length = 778
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 139/389 (35%), Positives = 215/389 (55%), Gaps = 46/389 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V D+ ++ +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVRHPLVKNAVANDVHFGKELTAIVITGPNTGGKTIMLKTLGLTQLMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIETAFVQNASMEFDTASLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSDVIVGDASQQVNQDN-DVNRIIEQLE-------EQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA L + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVELALNESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K S ++ +KV+ + + V++
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------SKLKKLAPEKVD---LSKNKVLQ-- 621
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ K+ P VGD + V S+G++GT+
Sbjct: 622 ----KAKKKRAPKVGDDIVVLSYGQRGTL 646
>gi|30264620|ref|NP_846997.1| recombination and DNA strand exchange inhibitor protein [Bacillus
anthracis str. Ames]
gi|47530091|ref|YP_021440.1| recombination and DNA strand exchange inhibitor protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|49187442|ref|YP_030694.1| recombination and DNA strand exchange inhibitor protein [Bacillus
anthracis str. Sterne]
gi|65321918|ref|ZP_00394877.1| COG1193: Mismatch repair ATPase (MutS family) [Bacillus anthracis
str. A2012]
gi|165871464|ref|ZP_02216111.1| MutS2 family protein [Bacillus anthracis str. A0488]
gi|167635560|ref|ZP_02393872.1| MutS2 family protein [Bacillus anthracis str. A0442]
gi|167641563|ref|ZP_02399810.1| MutS2 family protein [Bacillus anthracis str. A0193]
gi|170688257|ref|ZP_02879467.1| MutS2 family protein [Bacillus anthracis str. A0465]
gi|170708684|ref|ZP_02899122.1| MutS2 family protein [Bacillus anthracis str. A0389]
gi|177653140|ref|ZP_02935427.1| MutS2 family protein [Bacillus anthracis str. A0174]
gi|190566985|ref|ZP_03019901.1| MutS2 family protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227817334|ref|YP_002817343.1| recombination and DNA strand exchange inhibitor protein [Bacillus
anthracis str. CDC 684]
gi|229603197|ref|YP_002868830.1| recombination and DNA strand exchange inhibitor protein [Bacillus
anthracis str. A0248]
gi|254686957|ref|ZP_05150815.1| recombination and DNA strand exchange inhibitor protein [Bacillus
anthracis str. CNEVA-9066]
gi|254736658|ref|ZP_05194364.1| recombination and DNA strand exchange inhibitor protein [Bacillus
anthracis str. Western North America USA6153]
gi|254741696|ref|ZP_05199383.1| recombination and DNA strand exchange inhibitor protein [Bacillus
anthracis str. Kruger B]
gi|254754707|ref|ZP_05206742.1| recombination and DNA strand exchange inhibitor protein [Bacillus
anthracis str. Vollum]
gi|254757539|ref|ZP_05209566.1| recombination and DNA strand exchange inhibitor protein [Bacillus
anthracis str. Australia 94]
gi|386738447|ref|YP_006211628.1| MutS2 family protein [Bacillus anthracis str. H9401]
gi|421639161|ref|ZP_16079754.1| recombination and DNA strand exchange inhibitor protein [Bacillus
anthracis str. BF1]
gi|81714920|sp|Q81L40.1|MUTS2_BACAN RecName: Full=MutS2 protein
gi|254766187|sp|C3PAE0.1|MUTS2_BACAA RecName: Full=MutS2 protein
gi|254766188|sp|C3L808.1|MUTS2_BACAC RecName: Full=MutS2 protein
gi|30259278|gb|AAP28483.1| MutS2 family protein [Bacillus anthracis str. Ames]
gi|47505239|gb|AAT33915.1| MutS2 family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49181369|gb|AAT56745.1| MutS2 family protein [Bacillus anthracis str. Sterne]
gi|164712761|gb|EDR18291.1| MutS2 family protein [Bacillus anthracis str. A0488]
gi|167510448|gb|EDR85847.1| MutS2 family protein [Bacillus anthracis str. A0193]
gi|167528980|gb|EDR91735.1| MutS2 family protein [Bacillus anthracis str. A0442]
gi|170126364|gb|EDS95253.1| MutS2 family protein [Bacillus anthracis str. A0389]
gi|170667763|gb|EDT18516.1| MutS2 family protein [Bacillus anthracis str. A0465]
gi|172081664|gb|EDT66735.1| MutS2 family protein [Bacillus anthracis str. A0174]
gi|190561976|gb|EDV15945.1| MutS2 family protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227002648|gb|ACP12391.1| MutS2 family protein [Bacillus anthracis str. CDC 684]
gi|229267605|gb|ACQ49242.1| MutS2 family protein [Bacillus anthracis str. A0248]
gi|384388299|gb|AFH85960.1| MutS2 family protein [Bacillus anthracis str. H9401]
gi|403393580|gb|EJY90823.1| recombination and DNA strand exchange inhibitor protein [Bacillus
anthracis str. BF1]
Length = 786
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 145/402 (36%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PT+K+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTHKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSNRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCA--SQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++ Q+LR
Sbjct: 555 -QRQIIEFNEERDERLLKAQK-------------EGEEKVEAAKKEAEGII----QELRQ 596
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
L K H L ++ A+ +VK KQ VK T +
Sbjct: 597 LRKAQLANVK----DHEL--------IEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|55821734|ref|YP_140176.1| DNA mismatch repair protein [Streptococcus thermophilus LMG 18311]
gi|81676665|sp|Q5M2P5.1|MUTS2_STRT2 RecName: Full=MutS2 protein
gi|55737719|gb|AAV61361.1| DNA mismatch repair protein [Streptococcus thermophilus LMG 18311]
Length = 783
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 154/230 (66%), Gaps = 5/230 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + ++V F
Sbjct: 307 LINPVANDLRFDEDLTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSRVAIFQ 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + S SLVL+DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHIVEILNTADSNSLVLVDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK ENA MEFD L+PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-QIKTMATTHYPELKAYGIETQHVENASMEFDTATLRPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQ-FLEHVHE 667
IA RLGL I+V+ A L S ++N +I +E + +TQ LEH+ +
Sbjct: 486 EIARRLGLNEIIVKEAENLTDTDS-DVNRIIEQLEAQTVETQKRLEHIKD 534
>gi|375090529|ref|ZP_09736843.1| MutS2 family protein [Facklamia languida CCUG 37842]
gi|374565290|gb|EHR36561.1| MutS2 family protein [Facklamia languida CCUG 37842]
Length = 786
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 159/433 (36%), Positives = 233/433 (53%), Gaps = 49/433 (11%)
Query: 419 AARKGEKDTNLSPSEMQVSAL-ELAHP-------VPIDIFIARKTRVLVITGPNTGGKTI 470
A K + T S SE Q AL + HP V DI I ++LVITGPNTGGKTI
Sbjct: 283 AYAKANQATKPSFSEDQQIALWQARHPLIDPDKIVANDILIGDSYQLLVITGPNTGGKTI 342
Query: 471 CLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 530
LKT+GL +M +SGL + +++ F+ ++ADIGDEQS+ QSLSTFS H+ I II
Sbjct: 343 ILKTLGLVQVMGQSGLFVPCEAGSQLGVFEGIYADIGDEQSIEQSLSTFSSHMTNIVKII 402
Query: 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590
S SLVL DE+G+GT+P EG AL M++L+ + G+ + +ATTH+ ELK +
Sbjct: 403 EASHESSLVLFDELGSGTDPQEGAALAMAILDYLRKVGATV-MATTHYPELKVYAHETPK 461
Query: 591 FENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEV 650
NA MEFD L PTY++L GVPGRS+A +I++RLGL ++ +ARQ S +NE+
Sbjct: 462 TVNASMEFDSESLSPTYRLLIGVPGRSNAFDISKRLGLREDILADARQGISKESQSLNEM 521
Query: 651 IIEMERFKTQF-LEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAA 709
+ ++ER + Q L+H A FL S L K+L + L+
Sbjct: 522 VAKLERERRQSELKHA-SAVEFLNRSEQLLKDLRTEYNRYLDQ----------------- 563
Query: 710 IARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQ----HVLTSNFQ 765
L+ K+ +Q ++A+ K Q++R L + G+NQ HVL Q
Sbjct: 564 -KEDLMEKAKRQANEKVAEAQKEAEKLLQEIR-----DLQLVQ-GQNQTIKEHVLIDKKQ 616
Query: 766 QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEI 825
D+++ + V + K+ + VGD V V S+ ++G V++ + +K E
Sbjct: 617 --AFDQLKEAENLKKNKV-----LKKAKKAQGFAVGDQVEVLSYQQRGVVVE-QVAKNEY 668
Query: 826 VVQVGNMKWIMKF 838
+VQ+G +K MKF
Sbjct: 669 LVQMGILK--MKF 679
Score = 47.0 bits (110), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 140/324 (43%), Gaps = 59/324 (18%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGRE--------ATLTQLWSINQTYQDSLRLLDETNAA 103
++L+ LE+DK+ + + RT++ ++ A+L ++ + +++L +LD+ N +
Sbjct: 5 KTLQKLEYDKVKNQLRPHCRTNMAKDLVDQLQPSASLKEIETWQDEVEEALAILDQ-NKS 63
Query: 104 IEMQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEAL--AVVALLQFSETLQLSLRA 161
I + L G+ ++ + ++ L L V LL F + ++ +
Sbjct: 64 IPIPH-------LKGLGMAFKRLKLQAFLNGYELSQIGKLLTTVGQLLDFFDQMKAEEK- 115
Query: 162 AIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSAS---PALKQSRGQV 218
+ L + + Q L+ I Q V+E+GS+ SAS +++S+ Q
Sbjct: 116 ----------NYPALDKWVDQCVALPDLVHQIDQTVNEEGSVLSSASIKLAGIRRSQSQT 165
Query: 219 ---------QMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLS 269
Q+L K QL D LI N+ + + G+ T DQ
Sbjct: 166 EQAIRNVLNQLLRSKASQLSDALITIRNDRFVLPVKAEFRGQFG-GTVHDQ--------- 215
Query: 270 SSSGIGSVIEPLSAVPLNDELQ----QARASVTKAEEDVLLALTEKMQVDLDEIEKMLNG 325
SS+G +EP + V LN++L Q +A + + E++ +AL + EI +
Sbjct: 216 SSTGQTLYVEPQAVVALNNKLADLAAQEKAEIERILEELSMALVPY----VSEIRQNERM 271
Query: 326 IIQLDVVNARATYSLSFGGTSPNI 349
I QLD + A+A Y+ + T P+
Sbjct: 272 IAQLDFIQAKAAYAKANQATKPSF 295
>gi|227485246|ref|ZP_03915562.1| recombination and DNA strand exchange inhibitor protein MutS2
[Anaerococcus lactolyticus ATCC 51172]
gi|227236706|gb|EEI86721.1| recombination and DNA strand exchange inhibitor protein MutS2
[Anaerococcus lactolyticus ATCC 51172]
Length = 781
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 220/399 (55%), Gaps = 39/399 (9%)
Query: 443 HP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKV 496
HP VPID+ I L+ITGPNTGGKT+ LKTVGL +MA++ L I + E + V
Sbjct: 304 HPLLPGKVVPIDVAIGGDYTTLIITGPNTGGKTVSLKTVGLITLMAQTALFIPADEGSTV 363
Query: 497 PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556
FD VF DIGD+QS+ SLSTFS L I +I+++ TS SLVLLDEIG+GT+P+EG AL
Sbjct: 364 NVFDDVFLDIGDKQSIEMSLSTFSASLTNIVDILNRVTSNSLVLLDEIGSGTDPIEGAAL 423
Query: 557 GMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGR 616
+S+L E ++T ATTH+ ELK N+ NA +EF+ L PTYK+ G PG+
Sbjct: 424 AISILSHLTEK-EVMTFATTHYSELKYYAMENNRVMNASVEFNVNTLSPTYKLEIGTPGK 482
Query: 617 SSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSR 676
S+A I++RLGL +++ A+ L + N+++ ++E K Q EA+
Sbjct: 483 SNAFEISKRLGLSEEILKKAKDLISDDTKNFNKILEQIEDDKYQM-----EAK------- 530
Query: 677 NLHKNLLRTRRKILEHCASQRFR-KVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHK 735
+K + RR+I + R K ++I +A A + A ++ A++ + K
Sbjct: 531 --NKEIEAYRREI--QSIKDKLRNKSKEIDEAKAEIIKKAEERANEILDKANKESQAMLK 586
Query: 736 RAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT 795
A++ S++ + + ++ + + + F+ + +++ E + + K +P
Sbjct: 587 EAKR-----SKNANTRDIDRSLNKIRNKFKDSYIEREEDRFGQTRA-----KDAP----D 632
Query: 796 ELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
EL VGD++ V+ +K VI+ SK I VQ+G +K
Sbjct: 633 ELK-VGDMIIVAGLNEKAEVIEGPDSKGNIKVQMGILKM 670
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 145/308 (47%), Gaps = 30/308 (9%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTY-QDSLRLLDETNAAIEMQKHG 110
+SL VLE++K+ +S AR+SL ++ L S + Y +D L E A+
Sbjct: 4 KSLEVLEYNKILEKLSKMARSSLVKKQILDLKPSTDVGYLEDEL----EKTGAMAKVIAR 59
Query: 111 SCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKED--AD 168
+ ++D+ G L K + +RR L P++ L ++ LL+ SE L+ I + AD
Sbjct: 60 NGNIDIFG--LYDFKEIVGYIRRNGILEPSDLLKILGLLRVSEYLK-DYSKNIDDSYIAD 116
Query: 169 LYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
L+ R T ++ ++RS++ +ED I D+AS L R ++ E ++
Sbjct: 117 LFDRIT--TNDFLKEEIDRSILN------EED--IADNASRELLAIRRSLRRKEEEIKNK 166
Query: 229 MDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAV 284
++ + + E + VS GR + ++ S G++ S+SG IEP + V
Sbjct: 167 LNSYVTSSKYEDALQDKVVSVRDGRYVVPIKTNKRSVINGIVHDKSASGNTLFIEPSAIV 226
Query: 285 PLND---ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
LN+ +L+ + + D L L +K V++ E +K+ I ++D + A+A + L
Sbjct: 227 ELNNQYKDLELKEDAEIRRILDRLSRLAQKFDVEILENQKI---IARIDFLQAKAKFGLE 283
Query: 342 FGGTSPNI 349
+ P +
Sbjct: 284 NDYSLPKL 291
>gi|422341951|ref|ZP_16422891.1| hypothetical protein HMPREF9353_01557 [Treponema denticola F0402]
gi|325474019|gb|EGC77207.1| hypothetical protein HMPREF9353_01557 [Treponema denticola F0402]
Length = 570
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 145/470 (30%), Positives = 239/470 (50%), Gaps = 78/470 (16%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
+ +DE+G ++D P+L+ + +++ +E + + M N+ + + G
Sbjct: 8 VFSFIDENGELQDL--PSLRAIKNKIRSIEDDIDKTMRNYFTNDATRQMLQSNLPTVKDG 65
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R I A + +FKG + S SG +EP V N++L A A + +L
Sbjct: 66 RQVI---AVRSNFKGRIPGIIHEYSQSGQTFYLEPEEIVLKNNDLIAAHAEYERELLRLL 122
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS----FGGTSPNIFLPQDMKRSLTH 361
LT ++ + I++ I +LD V A + ++ S F G S ++ L + + +H
Sbjct: 123 QDLTSQIAEHTENIKEACEAITKLDCVAAASRWAHSNNCVFAG-SIDLGLSHSIGKDGSH 181
Query: 362 EPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAAR 421
+ + ++ YL +A HPLL G +A
Sbjct: 182 DSKGTPLA-------FYLHQARHPLL-----------------------------GKSA- 204
Query: 422 KGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMM 481
VPID+ +++ RVL+ITGPNTGGKT+ LKT L ++
Sbjct: 205 -----------------------VPIDLKLSKDDRVLIITGPNTGGKTVSLKTAALFALI 241
Query: 482 AKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLL 541
++G + + ++P+FD + DIGDEQS+ QSLSTFS H+K + IIS++ +SL++L
Sbjct: 242 NQTGWPVPAGPLTRLPYFDFIACDIGDEQSMDQSLSTFSAHMKNVSEIISRAGDKSLIIL 301
Query: 542 DEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 601
DE+G+GT+P EG A+ M++L+ E + + + TTHHG LK YS + NA +EF++
Sbjct: 302 DELGSGTDPQEGCAIAMAVLDDLLEKKAFVFV-TTHHGALKNYGYSKESCVNASVEFNQN 360
Query: 602 KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI 651
L PTY+IL GVPG S AI+IA+R GLP +++ A G A+++++I
Sbjct: 361 TLSPTYRILMGVPGESHAIDIAKRNGLPEHIIEKAHTYLGNNRADVSDLI 410
>gi|121534235|ref|ZP_01666060.1| MutS2 family protein [Thermosinus carboxydivorans Nor1]
gi|121307338|gb|EAX48255.1| MutS2 family protein [Thermosinus carboxydivorans Nor1]
Length = 789
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 137/390 (35%), Positives = 219/390 (56%), Gaps = 34/390 (8%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + +L+ITGPNTGGKT+ LKTVGL +M ++GL I + +++P F +VFA
Sbjct: 320 VPIDVRLGEDFSILLITGPNTGGKTVTLKTVGLFALMTQAGLFIPAGSGSEMPVFRNVFA 379
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ + I+++ ++ LVL+DEIGAGT+P EG AL M++LE
Sbjct: 380 DIGDEQSIEQSLSTFSAHMTNLVKILAKVSAHDLVLIDEIGAGTDPGEGAALAMAILEYL 439
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+G+ TIATTH+ ELKT YS ENA +EFD L+PTY++ G+PG S+A I+
Sbjct: 440 HSAGA-RTIATTHYSELKTFAYSRHGIENASVEFDIHTLRPTYRLQIGIPGSSNAFAISR 498
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGLP ++ ARQ A+ +++ +E+ K + + L +
Sbjct: 499 RLGLPQELIDRARQFLDKDYAQFEKILAVLEQEKKE-------YEERRRRAEELEAEVAA 551
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
R+K+ + A+ R+ + I A A S+V ++ + QA ++ + +Q ++
Sbjct: 552 LRQKLAQEEAALLARRREIIDKAQEEAMSIVRQARR-------QAEEVIARLKEQFSVAS 604
Query: 745 SQSLHCTKVGKNQHVLTSNFQ-QTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDL 803
+ + Q + + Q Q + ++ HP ++ K +P L G
Sbjct: 605 DKE-------RQQAIADARRQLQRQMAELHHPELDAAE-----KTAP----PALLTPGST 648
Query: 804 VHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
V+V++ +KG+V+ ++ E VVQ+G +K
Sbjct: 649 VYVTTLRQKGSVLAIKDG--EAVVQLGVLK 676
Score = 57.0 bits (136), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 124/268 (46%), Gaps = 33/268 (12%)
Query: 124 VKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQL 183
+++ +R + + L P E LA+ + L + L+ L A K + L LT+ ++
Sbjct: 76 IRAILRRLEIGAVLEPEELLAIASTLYAARRLKQFLTEA-KPSSVL------LTEKAGRI 128
Query: 184 FVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFL 243
R+L +I V E G ++D AS L + R ++++ ++++ + +D ++ + + F
Sbjct: 129 TALRNLEAAIESTVSEQGIVRDEASVELTRIRREIRVAQQRVKEKLDQILHSAEYQKYFQ 188
Query: 244 E-VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTK 299
E + +I G R I + + F G++ S+SG IEP++ V LN++++Q A+
Sbjct: 189 EALVTIRGDRYVIPIKQEHRYHFPGIVHDQSASGATVFIEPMAVVNLNNDIKQLVAAEKN 248
Query: 300 AEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSL 359
E +L AL+ ++ +D I + + LD A+A L P L D R
Sbjct: 249 EVERILAALSSQVARHVDAIRQNSEIVAALDFAFAKAKLGLDMQANMP---LLNDKGR-- 303
Query: 360 THEPVTSKVSSSEREWTIYLPKAYHPLL 387
I+L +A HPL+
Sbjct: 304 -----------------IFLRQARHPLI 314
>gi|55823654|ref|YP_142095.1| DNA mismatch repair protein [Streptococcus thermophilus CNRZ1066]
gi|81676513|sp|Q5LY40.1|MUTS2_STRT1 RecName: Full=MutS2 protein
gi|55739639|gb|AAV63280.1| DNA mismatch repair protein [Streptococcus thermophilus CNRZ1066]
Length = 783
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 154/230 (66%), Gaps = 5/230 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + ++V F
Sbjct: 307 LINPVANDLRFDEDLTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSRVAIFQ 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + S SLVL+DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHIVEILNTADSNSLVLVDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK ENA MEFD L+PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-QIKTMATTHYPELKAYGIETQHVENASMEFDTATLRPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQ-FLEHVHE 667
IA RLGL I+V+ A L S ++N +I +E + +TQ LEH+ +
Sbjct: 486 EIARRLGLNEIIVKEAENLTDTDS-DVNRIIEQLEAQTVETQKRLEHIKD 534
>gi|335429528|ref|ZP_08556426.1| recombination and DNA strand exchange inhibitor protein [Haloplasma
contractile SSD-17B]
gi|334889538|gb|EGM27823.1| recombination and DNA strand exchange inhibitor protein [Haloplasma
contractile SSD-17B]
Length = 780
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 230/398 (57%), Gaps = 54/398 (13%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI + ++ ++ITGPNTGGKT+ LKT+GL +M ++GL + ++E++K+ FD+VFA
Sbjct: 315 VPNDIMLGQEFTSIIITGPNTGGKTVTLKTLGLLTLMMQAGLLVPANEHSKLAVFDNVFA 374
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+K I NI+ T SLVLLDE+GAGT+P EG AL MSLL+ F
Sbjct: 375 DIGDEQSIEQSLSTFSSHMKTIINIVDNITINSLVLLDELGAGTDPKEGAALAMSLLDYF 434
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ GS + IATTH+ ELKT Y+ + NA +EF+ LKPTYK+L G+PGRS+A I++
Sbjct: 435 RKRGSRI-IATTHYPELKTYAYNTEKVINASVEFNVETLKPTYKLLIGIPGRSNAFEISK 493
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHF---LMLSRNLHK- 680
RLGL +V+++AR+ ++ +I ++E Q + + E F L +N ++
Sbjct: 494 RLGLNELVIEDAREKVDFEQTDVANLISQLETKGLQLEKLIDENEQFNQKLKQEKNTYQS 553
Query: 681 ---NLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
++ R + K++E + AA+I + SA+Q V
Sbjct: 554 KSLDIDRQKEKMIEKAKQE----------AASIIK------------SANQEAKEVINEL 591
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT-- 795
++L+ A +N+++ V ++ +S K KQ +V +T
Sbjct: 592 KELKKGAK----------------TNYKEHEVINIKSKLDSS----KYYKQKEKVSKTSH 631
Query: 796 ELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMK 833
+L GD V V +F + G +I+ + +K+E +VQ+G +K
Sbjct: 632 QLKE-GDQVMVLTFNRSGILIE-QVNKKEWLVQIGALK 667
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 154/344 (44%), Gaps = 41/344 (11%)
Query: 50 VYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLR-LLDETNAAIEM-Q 107
++ S + LE++K+ + + SLG +A + ++ +N +D+L LL ET+ A+ +
Sbjct: 1 MFTSSKTLEFEKILEQLKKYTYCSLGIDA-IDEIEILND--RDTLDDLLTETDEALRLLY 57
Query: 108 KHGSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
+ G DL ++ ++ I+ L PNE L + + S Q+ AA E
Sbjct: 58 RLG----DLPFGGITDIRPHIKRATIGGILNPNELLKISTFIYGSN--QIRKYAAKMEQE 111
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
I + I LF L + I + +D+ ++ D ASP LK R Q++ E ++
Sbjct: 112 Q--IESDKIVFYIENLFNLSDLSREINRCIDDFSNVVDDASPKLKDIRNQIKTNEARIKD 169
Query: 228 LMDMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSA 283
++ +++++ + L E ++ + R + + + +F G++ S SG IEP
Sbjct: 170 RLNSILQSQ--KDLLTEQLITIRNDRFVVPVKVENKNTFGGIIHDQSQSGNTFYIEPKMV 227
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V +N+ +Q + + E +L LT + + E+++ + I LD + +A Y+ +
Sbjct: 228 VEVNNRIQNLKNEEKREIEKILRELTLSVSEYVGELQENVYNIKLLDFIYTKAKYAKATN 287
Query: 344 GTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLL 387
T P I E ++L KA HPL+
Sbjct: 288 ATKPTI----------------------NDEGFVHLIKARHPLI 309
>gi|162661179|gb|EDQ48693.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 866
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 150/406 (36%), Positives = 216/406 (53%), Gaps = 52/406 (12%)
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
+++ VPID+ + +++TGPNTGGKT+ LKT+GL +MA SGL + + E +++
Sbjct: 502 IDMEKVVPIDVELGNSYSSIIVTGPNTGGKTVTLKTIGLLSLMAMSGLFVPAEEGSQLCV 561
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
FD+++ADIGDEQS+ QSLSTFS H+ I I++ T +SLVLLDE+GAGT+P EG+AL +
Sbjct: 562 FDAIYADIGDEQSIEQSLSTFSSHMTNIIRILNHMTPKSLVLLDEVGAGTDPAEGSALAI 621
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
S+LE G + +ATTH+ ELK Y NA MEFD L PTY++L GVPGRS+
Sbjct: 622 SILEHIHSLGCRM-VATTHYSELKAYAYERKGVINASMEFDVNTLSPTYRLLVGVPGRSN 680
Query: 619 AINIAERLGLPGIVVQNARQ---------LYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
A IAERLGLP +++ AR + AS E N + E ER K + L E
Sbjct: 681 AFAIAERLGLPQVILDYARGEVKEEDQRVEHMIASLEENRLGAESEREKAEKLRQEMEQ- 739
Query: 670 HFLMLSRNLHKNLLRTR-RKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
LR+R ++ LE QR R ++K A + + A+Q+
Sbjct: 740 -------------LRSRHQQELEKLEEQRDRLIEKARGEAKEVIAKARREAEQIIAD--- 783
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
LR A + K +H L + +Q +D+ E + K
Sbjct: 784 -----------LRQLAKEEGASVK----EHKLIAARRQ--LDEAEPQQRKKGAAKPKAKA 826
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+++ P GD V V S +KG V+++ +K E VVQ+G MK
Sbjct: 827 PRQIE----P--GDEVMVYSLNQKGHVVELSGAK-EAVVQLGIMKM 865
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 5/141 (3%)
Query: 174 MPLTQMIMQ-LFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
+PL + I + L ++L +I +DE + DSASP L Q R +++ E ++ + +D +
Sbjct: 306 IPLLEGISENLSEQKALEDAIKACIDESAEVLDSASPGLAQVRRELRSGEVRIREKLDSM 365
Query: 233 IRNENNESLFLE-VSSIHG-RLCIRTGADQLSFKGLLLSSSSGIGSV--IEPLSAVPLND 288
IR+ + + + + +I G R I A+ S+ G ++ SG G+ IEP S V +N+
Sbjct: 366 IRSSSVAKMLQDQLITIRGDRFVIPVKAEYRSYFGGIVHDQSGSGATLFIEPESIVAMNN 425
Query: 289 ELQQARASVTKAEEDVLLALT 309
+L++ R + E +L LT
Sbjct: 426 KLRETRMKEEREIEIILQKLT 446
>gi|228910376|ref|ZP_04074191.1| hypothetical protein bthur0013_45230 [Bacillus thuringiensis IBL
200]
gi|228849142|gb|EEM93981.1| hypothetical protein bthur0013_45230 [Bacillus thuringiensis IBL
200]
Length = 786
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 148/401 (36%), Positives = 220/401 (54%), Gaps = 39/401 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARS--LVHKRAQQLRP 742
+R+I+E +R K+ K K A+ + Q R LV+ + +L
Sbjct: 555 -QRQIIEFN-DERDEKLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLVNVKDHELIE 612
Query: 743 SASQSLHCT--KVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+ S+ L T ++ K Q V N TA KQ R
Sbjct: 613 AKSR-LEGTAPELVKKQKVNVKN-------------TAP-------KQQLR--------A 643
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 644 GDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|291524453|emb|CBK90040.1| MutS2 family protein [Eubacterium rectale DSM 17629]
Length = 792
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 132/404 (32%), Positives = 220/404 (54%), Gaps = 28/404 (6%)
Query: 439 LELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW 498
L+ + VPID+ + + + L+ITGPNTGGKT+ LKTVGL +M ++GLHI +++ +K+
Sbjct: 311 LDAKNVVPIDVRLGEEYKQLIITGPNTGGKTVSLKTVGLLTLMGQAGLHIPAADRSKLAI 370
Query: 499 FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558
F+ VFADIGDEQS+ QSLSTFS H+ I I+ ++ +SL L DE+ +GT+P EG AL +
Sbjct: 371 FEDVFADIGDEQSIEQSLSTFSSHMTNIVKILEKADDRSLCLFDELCSGTDPTEGAALAI 430
Query: 559 SLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSS 618
S+L + G+ +T+ATTH+ ELK S D ENAC EF+ L PTY++L G+PG+S+
Sbjct: 431 SILNRLHQYGA-ITMATTHYSELKVYALSTDGVENACCEFNVETLSPTYRLLIGIPGKSN 489
Query: 619 AINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNL 678
A I+ +LGL ++++A+ + ++I +E + Q +E L N
Sbjct: 490 AFAISSKLGLDENIIEDAKSRINDNDLDFEDLIASLES-QRQTIEKEQ-------LEINS 541
Query: 679 HKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQ 738
+K + +K LE ++ ++ K D ++ ++ ++ A+ L K +
Sbjct: 542 YKAEIEKLKKQLE----EKNERIDKSKD------KILREANEEAYKILQDAKELADKTIR 591
Query: 739 QLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELP 798
+++ K + L DK + + + K ++P+ R
Sbjct: 592 NFNKYGQGQAPMSQMEKERSALRDKMN----DKEKKLSDIKKNTAKANHKAPKKLR---- 643
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
+GD V V S KGTV + +K ++ VQ+G ++ ++ D+V
Sbjct: 644 -IGDSVLVLSLNLKGTVHTLPNAKGDLYVQMGILRSLVNINDLV 686
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 145/302 (48%), Gaps = 24/302 (7%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSL 114
+ LE++K+ +SS+A ++ L+ L I Y+ +R L T A + + +
Sbjct: 7 KTLEYNKILTMLSSYAACDETKKRCLS-LEPITDLYE--IRHLQTTTADALSRLYKDSGV 63
Query: 115 DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI---KEDA--DL 169
G+ V ++++ + L E L + +LL+ ++ ++ R A+ K+D+ L
Sbjct: 64 SFVGI--HNVHASLKRLDIGGALNTTELLRICSLLEVAKRVKAYGRNAMDNEKQDSLSGL 121
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ P++ +L I + + + I D ASP L + R ++ + +++ +
Sbjct: 122 FAGIEPVS----------ALCDEIKRCILSEEEIADDASPELFKIRKSIRGMNDRIHAQL 171
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
L+ N + + V+ GR C+ A+ + + G++ SS+G IEP++ V
Sbjct: 172 TKLMNNSTTRTYLQDAVVTMRDGRYCLPVKAEAKGNVPGMMHDQSSTGSTLFIEPMAVVN 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+EL++ + E +L AL++K+ ++ +E+ + +LD + A+A + S+ G
Sbjct: 232 LNNELKELFIKEQEEIEKILAALSDKVAMNAAALEQDYEILSELDFIFAKANLAKSYNGV 291
Query: 346 SP 347
+P
Sbjct: 292 AP 293
>gi|228967649|ref|ZP_04128670.1| hypothetical protein bthur0004_44420 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|402563934|ref|YP_006606658.1| recombination and DNA strand exchange inhibitor protein [Bacillus
thuringiensis HD-771]
gi|228792025|gb|EEM39606.1| hypothetical protein bthur0004_44420 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|401792586|gb|AFQ18625.1| recombination and DNA strand exchange inhibitor protein [Bacillus
thuringiensis HD-771]
Length = 786
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 148/401 (36%), Positives = 220/401 (54%), Gaps = 39/401 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARS--LVHKRAQQLRP 742
+R+I+E +R K+ K K A+ + Q R LV+ + +L
Sbjct: 555 -QRQIIEFN-DERDEKLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLVNVKDHELIE 612
Query: 743 SASQSLHCT--KVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+ S+ L T ++ K Q V N TA KQ R
Sbjct: 613 AKSR-LEGTAPELVKKQKVNVKN-------------TAP-------KQQLR--------A 643
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 644 GDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 145/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V++D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEVDIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|228941731|ref|ZP_04104278.1| hypothetical protein bthur0008_43670 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228974655|ref|ZP_04135221.1| hypothetical protein bthur0003_44080 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228981249|ref|ZP_04141549.1| hypothetical protein bthur0002_44100 [Bacillus thuringiensis Bt407]
gi|384188627|ref|YP_005574523.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410676948|ref|YP_006929319.1| MutS2 protein MutS [Bacillus thuringiensis Bt407]
gi|423386045|ref|ZP_17363301.1| MutS2 protein [Bacillus cereus BAG1X1-2]
gi|423527598|ref|ZP_17504043.1| MutS2 protein [Bacillus cereus HuB1-1]
gi|452201022|ref|YP_007481103.1| Recombination inhibitory protein MutS2 [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
gi|228778449|gb|EEM26716.1| hypothetical protein bthur0002_44100 [Bacillus thuringiensis Bt407]
gi|228785058|gb|EEM33071.1| hypothetical protein bthur0003_44080 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228817943|gb|EEM64021.1| hypothetical protein bthur0008_43670 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326942336|gb|AEA18232.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401634696|gb|EJS52459.1| MutS2 protein [Bacillus cereus BAG1X1-2]
gi|402452967|gb|EJV84777.1| MutS2 protein [Bacillus cereus HuB1-1]
gi|409176077|gb|AFV20382.1| MutS2 protein MutS [Bacillus thuringiensis Bt407]
gi|452106415|gb|AGG03355.1| Recombination inhibitory protein MutS2 [Bacillus thuringiensis
serovar thuringiensis str. IS5056]
Length = 786
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 148/401 (36%), Positives = 220/401 (54%), Gaps = 39/401 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARS--LVHKRAQQLRP 742
+R+I+E +R K+ K K A+ + Q R LV+ + +L
Sbjct: 555 -QRQIIEFN-DERDEKLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLVNVKDHELIE 612
Query: 743 SASQSLHCT--KVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+ S+ L T ++ K Q V N TA KQ R
Sbjct: 613 AKSR-LEGTAPELVKKQKVNVKN-------------TAP-------KQQLR--------A 643
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 644 GDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 82.4 bits (202), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S +++ I++ AD +
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSR----NMKRFIEDMADNGV 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 115 ELPILETHVAQIVSLYELEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|417982883|ref|ZP_12623531.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
21/1]
gi|417995567|ref|ZP_12635859.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
M36]
gi|417998549|ref|ZP_12638768.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
T71499]
gi|418001406|ref|ZP_12641551.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
UCD174]
gi|418014595|ref|ZP_12654190.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
Lpc-37]
gi|410529338|gb|EKQ04156.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
21/1]
gi|410537240|gb|EKQ11818.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
M36]
gi|410540964|gb|EKQ15468.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
T71499]
gi|410546729|gb|EKQ20974.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
UCD174]
gi|410553224|gb|EKQ27228.1| MutS2 family recombination inhibitory protein [Lactobacillus casei
Lpc-37]
Length = 786
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 145/396 (36%), Positives = 224/396 (56%), Gaps = 49/396 (12%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI + K + +VITGPNTGGKTI LKT+GL +M +SGL I + + +++ FD VFADIG
Sbjct: 319 DIPLGDKYQAMVITGPNTGGKTITLKTLGLLQLMGQSGLFIPADDESRIGIFDEVFADIG 378
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ Q+LSTFS H+ I +I+ Q + SLVL DE+GAGT+P EG AL +++L+A E
Sbjct: 379 DEQSIEQNLSTFSAHMDNIVHILKQLSQNSLVLFDELGAGTDPQEGAALAIAILDAVGEV 438
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L+PTY++L GVPGRS+A +I+ RLG
Sbjct: 439 GAYV-VATTHYPELKLYGYNTAKTINASMEFDSKTLQPTYRLLVGVPGRSNAFDISARLG 497
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
LP ++V+ A+ + + S E+N +I ++E+ + AR L ++++H L +
Sbjct: 498 LPSVIVERAKSMISSDSHELNNMISDLEKQRKAAETAYEAARRQLADAQSVHDELAAAYK 557
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
K ++R ++Q+ D A +LV K A++ K +QLR
Sbjct: 558 KF----TTERDAQLQQAKDKA---NTLVDK-----------AQTKADKIIKQLR-----Q 594
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP---------RVKRTELP 798
+ T G TV E+ A+ + +K + Q R + +
Sbjct: 595 MQLTNPG-------------TVK--ENQLIAAKTALKQLHQDEPLQKNRILRREREKQAL 639
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+VGD V V+S+ + GT+++ + K+ VQ+G +K
Sbjct: 640 HVGDEVKVASYDQTGTLLE-QFDKKHWQVQLGILKM 674
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 126/306 (41%), Gaps = 31/306 (10%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREAT-----LTQLWSINQTYQDSLRLLDETNAAIEMQK 108
L+ LE+DK+ ++ T+ GR LT ++ Q LDET
Sbjct: 6 LKTLEYDKIQQALLGQVVTANGRRLVQAMQPLTDPVAVQQA-------LDET-------A 51
Query: 109 HGSCSLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIK 164
G+ +L L G L + A++ V + L E ++ +LQ + L
Sbjct: 52 DGASALRLKGGIPVPQLENIDPALKRVDIGAVLNGQELASISRVLQTVSAIDKFL----- 106
Query: 165 EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
D I F L + L V L + + VD DG++ D ASP L R Q++ +E +
Sbjct: 107 TDLQDQIDFRQLYTLQESLTVLPQLSRRLKTAVDPDGTLTDEASPQLHGVREQIKSIEGE 166
Query: 225 LYQLMDMLIRNENNESLFLEVSSIH-GRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPL 281
+ M R ++ L + +I R I A+ + G ++ S G IEP
Sbjct: 167 IRGKMTNYTRGAQSKYLSDPIVTIRDDRYVIPVKAEYRAKFGGVVHDQSATGQTLFIEPQ 226
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ V LN+ L++A+ + +L L+ ++ +I+ + D +NA+A + +
Sbjct: 227 AIVALNNRLREAQLAEVAEINRILAELSNELAPYTGQIKANAAVLGHFDFINAKARLAKA 286
Query: 342 FGGTSP 347
T P
Sbjct: 287 EKATEP 292
>gi|333994261|ref|YP_004526874.1| MutS2 family protein [Treponema azotonutricium ZAS-9]
gi|333734619|gb|AEF80568.1| MutS2 family protein [Treponema azotonutricium ZAS-9]
Length = 801
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 159/485 (32%), Positives = 235/485 (48%), Gaps = 83/485 (17%)
Query: 188 SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL-MDMLIRNENNESLFLEVS 246
S+ I +++D++G ++D + + R ++Q L + L M +E L V
Sbjct: 128 SVSTEIFRILDKEGKLRDLSE--FRDIRRRIQALAKDLETAGMKYTGNDETRRMLQSGVP 185
Query: 247 SIH-GRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEED 303
S GR+ + A+ + KG++ SS+G +EP V N+EL +
Sbjct: 186 SQRDGRMVLAVKANYRGRIKGIVHEVSSTGQTLFVEPEEVVEKNNELLIENRRLDAEIRR 245
Query: 304 VLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEP 363
VL +T ++ +I K GI+ L+ + ARA Y G
Sbjct: 246 VLREMTGRILASHTQIAKFHEGIVHLETLRARARYGFETRG------------------- 286
Query: 364 VTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKG 423
K ++ +R+ + L KA HP L G A
Sbjct: 287 ---KFAALDRDGALILKKARHP----------------------------LLGAKA---- 311
Query: 424 EKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK 483
VP+D + TR +++TGPNTGGKT+ LKT GL +M +
Sbjct: 312 ---------------------VPLDFAMNGNTRTVIVTGPNTGGKTVALKTAGLLALMNQ 350
Query: 484 SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543
GL + E + +P FD V+ADIGDEQS+SQSLSTFS H+ I +I S++ +SLVLLDE
Sbjct: 351 FGLPLPIDEGSCLPIFDGVYADIGDEQSISQSLSTFSSHMTNIASICSRAGERSLVLLDE 410
Query: 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603
+G+GT+P EG+A+ M++L+ E S L IATTHHG LK Y+ +NA MEFD L
Sbjct: 411 LGSGTDPEEGSAIAMAILDHLIEKRSRL-IATTHHGILKNYGYTRKGVQNASMEFDGKTL 469
Query: 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
PT++I+ G+PG S A++IA R GL +V AR A+I+ V+I R K + L+
Sbjct: 470 SPTFRIVMGIPGESRAVDIAARNGLGADIVAKARTYLAEEQADIS-VLINGLREKHRELD 528
Query: 664 HVHEA 668
EA
Sbjct: 529 AATEA 533
>gi|323142314|ref|ZP_08077146.1| MutS2 family protein [Phascolarctobacterium succinatutens YIT
12067]
gi|322413198|gb|EFY04085.1| MutS2 family protein [Phascolarctobacterium succinatutens YIT
12067]
Length = 793
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 167/262 (63%), Gaps = 3/262 (1%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP+++ + K +L+ITGPNTGGKT+ LK VGL +MA+ GL I +S AK+P F +V+A
Sbjct: 315 VPLNVQLGDKFTMLLITGPNTGGKTVALKAVGLFALMAQIGLFIPASS-AKMPVFRAVYA 373
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ + I+++ + LVL+DEI AGT+P EG AL M++LE
Sbjct: 374 DIGDEQSIEQSLSTFSAHMTNLIRILNEVKAGDLVLIDEICAGTDPNEGAALAMAMLEHL 433
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
E G +LT+ TTH+ ELKT Y ++ ENA +EFD V L+PTY++L GVPG S+A NI+
Sbjct: 434 HEQG-VLTMVTTHYSELKTFAYGHEGMENASVEFDPVSLRPTYRLLMGVPGSSNAFNISR 492
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL +++NA +L + V+ E++ + ++ E S L +N L
Sbjct: 493 RLGLAEDIIKNAGELLNQEHVHMENVLQELDSERRRYESGSKEIEDLRRESEQL-RNALA 551
Query: 685 TRRKILEHCASQRFRKVQKISD 706
+ E ++ RK ++ +D
Sbjct: 552 YSKSEFERRKNEMLRKAREQAD 573
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 153/328 (46%), Gaps = 34/328 (10%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHG-- 110
+++ LE+DK+ + ++S A T LG++A ++ I + RL +ET A+ + G
Sbjct: 5 AVKTLEFDKVKNMLASKAATFLGKQAIIS--LQIESEFSKVKRLQEETAEALRILDEGRR 62
Query: 111 ---SCSLDLTGVDLSLVKSAIREVRRA---SPLRPNEALAVVALLQFSETLQLSLRAAIK 164
+ ++T +V+RA S L P E + +Q +++ ++
Sbjct: 63 FPFGGAFNITA-----------DVKRAELGSVLEPEELQHIQTTVQAFASMKDFTAENVE 111
Query: 165 EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
+L LTQ L K I +DE G IKD+ASP L R +Q+ + +
Sbjct: 112 TAPNLAEYGAELTQF-------SRLEKQIGSAIDEYGEIKDNASPKLGGLRAAIQIAKNR 164
Query: 225 LYQLMDMLIRNENNESLFLE-VSSIHG-RLCIRTGAD-QLSFKGLLLSSSSGIGSV--IE 279
+ + +D ++ + NN+ F++ + ++ G R I + +++F G ++ SG G+ IE
Sbjct: 165 VKEKLDSILHDPNNQKYFMDNIVTMRGDRYVIPVKQEYKMNFPG-IVHDQSGTGATLFIE 223
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
PL+ V LN+++++ A + E +L LT+ + + + L LDV+ ARA +
Sbjct: 224 PLAVVNLNNDIKRYVAEEHEEMERILRQLTQNVGAEAKALLASLEIFTTLDVICARALLA 283
Query: 340 LSFGGTSPNIFLPQDMKRSLTHEPVTSK 367
P + L ++ + P+ K
Sbjct: 284 QEQHAVRPMLVLSGGVEIAQGRHPLLPK 311
>gi|336114602|ref|YP_004569369.1| MutS2 family protein [Bacillus coagulans 2-6]
gi|335368032|gb|AEH53983.1| MutS2 family protein [Bacillus coagulans 2-6]
Length = 741
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 159/245 (64%), Gaps = 1/245 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI + + +VITGPNTGGKTI LKT+GL +MA++GL I + + +++ F VFA
Sbjct: 275 VPNDITLGQDYTTIVITGPNTGGKTITLKTIGLCTLMAQAGLQIPALDGSEMAVFKEVFA 334
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I+ + QSLVL DE+GAGT+P EG AL +S+L+
Sbjct: 335 DIGDEQSIEQSLSTFSSHMTNIVEILKRVDDQSLVLFDELGAGTDPQEGAALAISILDEV 394
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ G+ + +ATTH+ ELK Y+ + NA +EFD L PTY++L GVPGRS+A I+
Sbjct: 395 YKRGARV-VATTHYPELKAYAYNREGVVNASVEFDVETLSPTYRLLIGVPGRSNAFEISR 453
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ +A+ L GA + E+ +I +E + + + EA+ L + LH +L +
Sbjct: 454 RLGLSPSVIAHAQSLIGADTNEVENMIAALESARREAEKERQEAQKLLEDAEGLHHDLQK 513
Query: 685 TRRKI 689
R+
Sbjct: 514 QMRQF 518
Score = 66.2 bits (160), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 9/238 (3%)
Query: 119 VDLSLVKSAIREVRRAS---PLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMP 175
V LS + R ++RA+ L P E + + + + S T++ + +E+ L I +
Sbjct: 18 VPLSGIYDIRRHLKRAAIGGRLNPQELVQIASTIHVSRTMKRFIEGIAEEETALPI--LT 75
Query: 176 LTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRN 235
LT M ++ V L I VDE+G I D+AS L+Q R ++ ER++ + ++ IR
Sbjct: 76 LTSMADRIAVLTPLEHDIRNAVDENGEILDTASETLRQIRHGLRGTERRIREKLEGYIRG 135
Query: 236 ENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLNDELQ 291
+N + + ++ + R I + + G ++ SSSG IEP S V LN++L+
Sbjct: 136 KNAAKMLSDAIITIRNDRYVIPVKQEYRANYGGIVHDQSSSGQTLFIEPQSVVDLNNQLR 195
Query: 292 QARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNI 349
+ + E +L L+ + E+ ++ + D + A+A Y S G+ P I
Sbjct: 196 EWHLKEQQEIERILSELSAAVAAAGGELNTIVEILADFDFMFAKALYGRSIKGSKPVI 253
>gi|418018649|ref|ZP_12658205.1| DNA mismatch repair protein [Streptococcus salivarius M18]
gi|345527498|gb|EGX30809.1| DNA mismatch repair protein [Streptococcus salivarius M18]
Length = 782
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 153/230 (66%), Gaps = 5/230 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
LA+PV D+ +VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + ++V F
Sbjct: 307 LANPVANDLRFDEDLTAIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILTDKGSRVAIFQ 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + S SLVL+DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHIVEILNAADSNSLVLVDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK ENA MEFD L PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-QIKTMATTHYPELKAYGIETQHVENASMEFDTATLSPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQ-FLEHVHE 667
IA RLGL I+V+ A L S ++N +I +E + +TQ LEH+ +
Sbjct: 486 EIARRLGLNEIIVKEAENLTDTDS-DVNRIIEQLEAQTVETQKRLEHIKD 534
>gi|299822579|ref|ZP_07054465.1| DNA mismatch repair protein MutS [Listeria grayi DSM 20601]
gi|299816108|gb|EFI83346.1| DNA mismatch repair protein MutS [Listeria grayi DSM 20601]
Length = 785
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 202/655 (30%), Positives = 325/655 (49%), Gaps = 112/655 (17%)
Query: 192 SIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIH 249
+I VDE G+I DSAS L+ R ++ E ++ + ++ L+RN N + + ++ +
Sbjct: 135 TISLTVDESGAILDSASETLRGIRSGMRRAESRVREKLEELLRNSNTSKMLSDAIITIRN 194
Query: 250 GRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLA 307
R I + + F G++ S+SG +EP V LN+E + + K E D +LA
Sbjct: 195 DRFVIPVKQEYKNHFGGIVHDQSASGQTLFMEPARVVELNNERRSLKVR-EKQEIDRILA 253
Query: 308 LTEKMQVD-LDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTS 366
+ + I + + D + A+A Y S +P +
Sbjct: 254 EVSAVVAEWTPAIHHNTYLLGRFDFIFAKAKYGKSIRAVTPQL----------------- 296
Query: 367 KVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKD 426
E I L KA HPLL
Sbjct: 297 -----NTEKKIKLIKARHPLL--------------------------------------- 312
Query: 427 TNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL 486
P+E V+ DI++ +VITGPNTGGKTI LKT+GL +MA++GL
Sbjct: 313 ----PAETVVAN---------DIYLGEDFSAIVITGPNTGGKTITLKTLGLLTLMAQAGL 359
Query: 487 HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGA 546
I + E + V FD+VFADIGDEQS+ Q+LSTFS H+ I +I+ ++ +SLVL DE+GA
Sbjct: 360 QIPAEEESVVSVFDAVFADIGDEQSIEQNLSTFSSHMTNIVSILEKTNDRSLVLFDELGA 419
Query: 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPT 606
GT+P EG AL +++L+A +SG+ + +ATTH+ ELK Y+ F NA +EF+ L PT
Sbjct: 420 GTDPQEGAALAIAILDAVHDSGASV-VATTHYPELKAYGYNRPFATNASVEFNVETLSPT 478
Query: 607 YKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVH 666
Y++L GVPGRS+A +I+ RLGL V+QNAR L SA++N++I +E + Q +
Sbjct: 479 YRLLIGVPGRSNAFDISSRLGLREEVIQNARNLIDTESADLNDMISSLEEKRNQAEKEYE 538
Query: 667 EARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
A + L K+L +++I+++ +Q+ V+K + AA +++ K +
Sbjct: 539 AAYQIARDAEKLQKDL---QKEIIQYH-NQKENLVEKANKEAA---AIIEK-------AE 584
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
++A +++H +Q++ S +Q++ +H L + + K P T S V +
Sbjct: 585 TEAEAVMHD-LRQMQLSGAQTI-------KEHELIDARTRLSQAK---PKTISKQPVPE- 632
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
V + + GD V V S G+KG ++ + K+E VQ+G +K +K D+
Sbjct: 633 ----HVVQVHVFAPGDNVRVLSLGQKGVLLD-QTGKKEWNVQIGIIKMKIKEKDL 682
>gi|392423579|ref|YP_006464573.1| MutS2 family protein [Desulfosporosinus acidiphilus SJ4]
gi|391353542|gb|AFM39241.1| MutS2 family protein [Desulfosporosinus acidiphilus SJ4]
Length = 788
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 134/414 (32%), Positives = 213/414 (51%), Gaps = 39/414 (9%)
Query: 435 QVSALELAHP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
Q+ ++ HP VP+ + + LVITGPNTGGKT+ LK +GL M +SGLHI
Sbjct: 300 QLKLIQARHPLIGGKVVPLSVELGIGFDTLVITGPNTGGKTVALKVIGLMAAMTQSGLHI 359
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ + + F +FADIGDEQS+ QSLSTFSGH+K I II +S +SLVLLDE+GAGT
Sbjct: 360 PAESNSSMGVFSQIFADIGDEQSVEQSLSTFSGHMKNIVEIIDRSDERSLVLLDEVGAGT 419
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG AL M +L G T++TTH+G LKT Y +NA +EFD L+PTY+
Sbjct: 420 DPTEGAALAMGILAELHSRGC-RTVSTTHYGALKTFAYETPRVKNASVEFDTETLRPTYR 478
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
+L G+PG+S+A IA RLGL V++ A N + E E +E++ E
Sbjct: 479 LLIGIPGKSNAFTIARRLGLSEGVLERA-----------NTFVTEREMQVADLIENLGET 527
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS- 727
+ L K +++ R+ +E K Q++ + + +L + A +L A
Sbjct: 528 HREI----ELEKEKVQSGRQAVEQQTKALEEKSQRLDEDYDLLMTLAKEEAAELVREAKR 583
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+A +++ + + L+ Q K + +++ + K ++ ++
Sbjct: 584 EAEAIIAELKEALKKETKQQQDIEKARQGFRRISNKLDKGRAVKQTGSGLSADQIM---- 639
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+G V ++ +KG V+K+ + E++VQ G MK ++ ++
Sbjct: 640 ------------LGQTVLMTKLRQKGQVLKLPNASGEVLVQAGIMKVMVPLAEL 681
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 115/239 (48%), Gaps = 16/239 (6%)
Query: 131 VRRASPLRPNEALAVVA-------LLQFSETLQLS--LRAAIKEDADLYIRFMPLTQMIM 181
VR A +RP ++ LL+ +TLQ+ L+ +E + + R L ++ +
Sbjct: 67 VRGAKEIRPYLERCLLGGVIHGEELLEIRDTLQVGRRLKQFFQESQEEFPR---LWEVSL 123
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
+ ++L I + + EDG + D+ASP L + R + L+ ++ + ++ +RN + +
Sbjct: 124 SIEPQKALEDEISRCIAEDGKVADNASPELAELRRAIYRLQNRIRESLEGTLRNPAYQKM 183
Query: 242 FLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASV 297
+ ++ R I + + +F G++ S+SG IEP+ V L +EL++
Sbjct: 184 LQDPIITQRSDRYVIPIKQEYRGAFPGIVHDQSASGATLFIEPMPVVQLGNELREVVLKE 243
Query: 298 TKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+ + +L L+ +++ + + + + +LD V A+A S+S +P + Q +K
Sbjct: 244 QREVQRILQMLSAQVETRAETVADLHEALAKLDFVLAKANLSVSMNAGAPELVEKQQLK 302
>gi|445382616|ref|ZP_21427302.1| MutS family DNA structure-specific ATPase [Streptococcus
thermophilus MTCC 5460]
gi|445395409|ref|ZP_21429035.1| MutS family DNA structure-specific ATPase [Streptococcus
thermophilus MTCC 5461]
gi|444748486|gb|ELW73452.1| MutS family DNA structure-specific ATPase [Streptococcus
thermophilus MTCC 5461]
gi|444748654|gb|ELW73613.1| MutS family DNA structure-specific ATPase [Streptococcus
thermophilus MTCC 5460]
Length = 783
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 154/230 (66%), Gaps = 5/230 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + +++ F
Sbjct: 307 LINPVANDLRFDEDLTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSRIAIFQ 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + S SLVL+DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHIVEILNTADSNSLVLVDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK ENA MEFD L+PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-QIKTMATTHYPELKAYGIETQHVENASMEFDTATLRPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQ-FLEHVHE 667
IA RLGL I+V+ A L S ++N +I +E + +TQ LEH+ +
Sbjct: 486 EIARRLGLNEIIVKEAENLTDTDS-DVNRIIEQLEAQTVETQKRLEHIKD 534
>gi|421224287|ref|ZP_15681033.1| mutS2 protein [Streptococcus pneumoniae 2070768]
gi|395591623|gb|EJG51918.1| mutS2 protein [Streptococcus pneumoniae 2070768]
Length = 689
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 137/389 (35%), Positives = 215/389 (55%), Gaps = 46/389 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V D++ + +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVCHPLVKNAVANDVYFGQDLTAIVITGPNTGGKTIMLKTLGLTQVMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQIKTMATTHYPELKAYGIETAFVQNASMEFDTATLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSEVIVGDASQQIDQDN-DVNRIIEQLE-------EQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA + + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVDMALSESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K + ++ +KV+ + + V++
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------AKLKKLAPEKVD---LSKNKVLQ-- 621
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ K+ P VGD + V S+G++GT+
Sbjct: 622 ----KAKKKRAPKVGDDIVVLSYGQRGTL 646
>gi|294101715|ref|YP_003553573.1| MutS2 family protein [Aminobacterium colombiense DSM 12261]
gi|293616695|gb|ADE56849.1| MutS2 family protein [Aminobacterium colombiense DSM 12261]
Length = 783
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 205/399 (51%), Gaps = 38/399 (9%)
Query: 440 ELAHP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY 493
+L HP +P+ I R VLV+TGPNTGGKT+ LKTVG+ +++A G + + E
Sbjct: 305 DLLHPLLGEKGIPLTIECGRSFHVLVVTGPNTGGKTVALKTVGMGIILAWCGFPLPAKEG 364
Query: 494 AKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553
V D+VFADIGDEQS+ Q+LSTFS HLK I +I+S++T SLVLLDE+GAGT+P EG
Sbjct: 365 TVVGNLDNVFADIGDEQSIEQNLSTFSAHLKNIIHILSEATRSSLVLLDELGAGTDPQEG 424
Query: 554 TALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGV 613
ALG++L++ E S +T+ATTHH +K+ + E A MEF+ L PTY +L G+
Sbjct: 425 AALGIALIDTLREKKS-ITLATTHHNPIKSYALTTPHVETASMEFNVETLAPTYHLLMGI 483
Query: 614 PGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLM 673
PGRS+AI IAER G+P V+Q AR + EVI ++ K L H E
Sbjct: 484 PGRSNAIYIAERYGMPSEVLQKARATLKEQEISMEEVIADLHERKA-LLNHEWEKMEEQR 542
Query: 674 LSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLV 733
+L + K LE QR + + K AA L + ++R ++
Sbjct: 543 QKADLLSKEYSEKMKALEE---QREKIIAKAEQQAATV----------LASAEEESRRMI 589
Query: 734 HKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVK 793
+ R ++LH GK +++ + E +K +K R
Sbjct: 590 RDLDEAARSVVQRNLH----GKRENIREK--------RKELEQKEEKRFIKKMKDEKRNL 637
Query: 794 RTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNM 832
+GD V ++ GT++ ++ +K E+ M
Sbjct: 638 -----EIGDAVSIAGTSITGTILALKGNKAEVQAGAARM 671
>gi|75762595|ref|ZP_00742445.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218899706|ref|YP_002448117.1| recombination and DNA strand exchange inhibitor protein [Bacillus
cereus G9842]
gi|228903069|ref|ZP_04067206.1| hypothetical protein bthur0014_42360 [Bacillus thuringiensis IBL
4222]
gi|423358361|ref|ZP_17335864.1| MutS2 protein [Bacillus cereus VD022]
gi|423560939|ref|ZP_17537215.1| MutS2 protein [Bacillus cereus MSX-A1]
gi|434377706|ref|YP_006612350.1| recombination and DNA strand exchange inhibitor protein [Bacillus
thuringiensis HD-789]
gi|226723045|sp|B7IJV1.1|MUTS2_BACC2 RecName: Full=MutS2 protein
gi|74489915|gb|EAO53281.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218542145|gb|ACK94539.1| MutS2 family protein [Bacillus cereus G9842]
gi|228856555|gb|EEN01078.1| hypothetical protein bthur0014_42360 [Bacillus thuringiensis IBL
4222]
gi|401086048|gb|EJP94280.1| MutS2 protein [Bacillus cereus VD022]
gi|401202784|gb|EJR09634.1| MutS2 protein [Bacillus cereus MSX-A1]
gi|401876263|gb|AFQ28430.1| recombination and DNA strand exchange inhibitor protein [Bacillus
thuringiensis HD-789]
Length = 786
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 148/401 (36%), Positives = 220/401 (54%), Gaps = 39/401 (9%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 CNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + +EA S LH+ L
Sbjct: 497 RLGLSDRVIDQARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHREL-- 554
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARS--LVHKRAQQLRP 742
+R+I+E +R K+ K K A+ + Q R LV+ + +L
Sbjct: 555 -QRQIIEFN-DERDEKLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLVNVKDHELIE 612
Query: 743 SASQSLHCT--KVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNV 800
+ S+ L T ++ K Q V N TA KQ R
Sbjct: 613 AKSR-LEGTAPELVKKQKVNVKN-------------TAP-------KQQLR--------A 643
Query: 801 GDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG +++ + S E VQ+G +K +K +++
Sbjct: 644 GDEVKVLTFGQKGQLLE-KVSDTEWSVQIGILKMKVKESNM 683
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 144/300 (48%), Gaps = 15/300 (5%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGS 111
+LRVLE++K+ + +SLGR+ + S + +++ + + D T+ A ++ + GS
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKHLVPSTD--FEEIVEMQDTTDEAAKVIRLKGS 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
L ++ ++S ++ + S L PNE L + + S ++ + + +L I
Sbjct: 63 APLG----GITDIRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFIEDMVDNGVELPI 118
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + ++
Sbjct: 119 ----LETHVAQIVSLYDLEKKITNCIGDGGEVVDSASDKLRGIRTQIRTAESRIREKLEN 174
Query: 232 LIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
+ R+ N + + + V+ + R I + G ++ S+SG IEP V LN
Sbjct: 175 MTRSSNAQKMLSDSIVTIRNERYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVELN 234
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ LQ+AR + E +LL LTE++ V+ D + + + LD + A+A Y+ T P
Sbjct: 235 NALQEARVKEKQEIERILLMLTEEVAVEADIVLSNVEVVANLDFIFAKAFYAKRIKATKP 294
>gi|418193090|ref|ZP_12829586.1| mutS2 family protein [Streptococcus pneumoniae GA47439]
gi|353861237|gb|EHE41176.1| mutS2 family protein [Streptococcus pneumoniae GA47439]
Length = 778
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 215/389 (55%), Gaps = 46/389 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V D++ + +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVCHPLVKNAVANDVYFGQDLTAIVITGPNTGGKTIMLKTLGLTQVMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQIKTMATTHYPELKAYGIETAFVQNASMEFDTATLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q S ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSEVIVGDASQQIDQDS-DVNRIIEQLE-------EQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA + + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRVLKKLYNELNREKETELNKAREQAAEIVDMALSESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K + ++ +KV+ + + V++
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------AKLKKLAPEKVD---LSKNKVLQ-- 621
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ K+ P VGD + V S+G++GT+
Sbjct: 622 ----KAKKKRAPKVGDDIVVLSYGQRGTL 646
>gi|449128552|ref|ZP_21764798.1| MutS2 protein [Treponema denticola SP33]
gi|448940960|gb|EMB21864.1| MutS2 protein [Treponema denticola SP33]
Length = 818
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 146/469 (31%), Positives = 235/469 (50%), Gaps = 76/469 (16%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
+ +DE+G ++D P+L+ + +++ +E + + M N+ + + G
Sbjct: 138 VFSFIDENGELQDL--PSLRAIKNKIRSIEDDIDKTMRNYFTNDATRQMLQSNLPTVKDG 195
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R I A + +FKG + S SG +EP V N++L A A + +L
Sbjct: 196 RQVI---AVRSNFKGRIPGIIHEYSQSGQTFYLEPEEIVLKNNDLIAAHAEYERELLRLL 252
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVT 365
LT ++ + I++ I +LD V A + ++ S N + L+H
Sbjct: 253 QDLTSQIAEHTENIKEACEAITKLDCVAAASRWA-----HSNNCVFAGSIDLGLSHS--I 305
Query: 366 SKVSSSEREWT---IYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARK 422
K SS + + T YL +A HPLL G +A
Sbjct: 306 GKDSSHDSKGTPLAFYLHQARHPLL-----------------------------GKSA-- 334
Query: 423 GEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMA 482
VPID+ +++ RVL+ITGPNTGGKT+ LKT L ++
Sbjct: 335 ----------------------VPIDLKLSKDDRVLIITGPNTGGKTVSLKTAALFALIN 372
Query: 483 KSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLD 542
++G + + ++P+FD + DIGDEQS+ QSLSTFS H+K + II ++ +SL++LD
Sbjct: 373 QTGWPVPAGPLTRLPYFDFIACDIGDEQSMDQSLSTFSAHMKNVSEIIRRAGDKSLIILD 432
Query: 543 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 602
E+G+GT+P EG A+ M++L+ E + + + TTHHG LK YS D NA +EF++
Sbjct: 433 ELGSGTDPQEGCAIAMAVLDDLLEKKAFVFV-TTHHGALKNYGYSKDSCVNASVEFNQNT 491
Query: 603 LKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI 651
L PTY+IL GVPG S A++IA+R GLP +++ A G A+++++I
Sbjct: 492 LSPTYRILMGVPGESHAVDIAKRNGLPEHIIEKAHTYLGNNRADVSDLI 540
>gi|386087362|ref|YP_006003236.1| Mismatch repair ATPase (MutS family) [Streptococcus thermophilus
ND03]
gi|312279075|gb|ADQ63732.1| Mismatch repair ATPase (MutS family) [Streptococcus thermophilus
ND03]
Length = 783
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 154/230 (66%), Gaps = 5/230 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
L +PV D+ V+VITGPNTGGKT+ LKT+GLA +MA+SGL IL+ + ++V F
Sbjct: 307 LINPVANDLRFDEDLTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSRVAIFQ 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I I++ + S SLVL+DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHIVEILNTADSNSLVLVDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
LE S + T+ATTH+ ELK ENA MEFD L+PTY+ + GVPGRS+A
Sbjct: 427 LEHLRLS-QIKTMATTHYPELKAYGIETQHVENASMEFDTATLRPTYRFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVI--IEMERFKTQ-FLEHVHE 667
IA RLGL I+V+ A L S ++N +I +E + +TQ LEH+ +
Sbjct: 486 EIARRLGLNEIIVKEAENLTDTDS-DVNRIIEQLEAQIVETQKRLEHIKD 534
>gi|153932430|ref|YP_001385445.1| recombination and DNA strand exchange inhibitor protein
[Clostridium botulinum A str. ATCC 19397]
gi|153936995|ref|YP_001388852.1| recombination and DNA strand exchange inhibitor protein
[Clostridium botulinum A str. Hall]
gi|229486367|sp|A7FY72.1|MUTS2_CLOB1 RecName: Full=MutS2 protein
gi|152928474|gb|ABS33974.1| MutS2 family protein [Clostridium botulinum A str. ATCC 19397]
gi|152932909|gb|ABS38408.1| MutS2 family protein [Clostridium botulinum A str. Hall]
Length = 788
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 141/413 (34%), Positives = 221/413 (53%), Gaps = 37/413 (8%)
Query: 436 VSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
V +E HP VPI + + + L+ITGPNTGGKT+ LKTVGL +MA SGL I
Sbjct: 299 VDIIEGRHPLIDRREVVPISVKLGEEFTSLMITGPNTGGKTVTLKTVGLIHLMAMSGLMI 358
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ E + + +F++VFADIGDEQS+ QSLSTFS H+K I I+ ++ SLVL DE+GAGT
Sbjct: 359 PARENSVISYFNNVFADIGDEQSIEQSLSTFSSHMKNIVEIMDKADENSLVLFDELGAGT 418
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG AL +S+LE + G+ + IATTH+ ELK + ENA +EFD L+PTY+
Sbjct: 419 DPTEGAALAISILENLRKRGTKI-IATTHYSELKAYALRKEGVENASVEFDVETLRPTYR 477
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
+L G+PG+S+A I++RLGLP ++ AR+ + E+I + + + ++ +A
Sbjct: 478 LLIGIPGKSNAFEISKRLGLPDYIIDFARENISNENIRFEELI---QNLQEKSIKAQEDA 534
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
R L+ N L+ R + ++ +QK+ D A I + A+ + A +
Sbjct: 535 R----LAEN-----LKLERDKEKKKYEEKLEGLQKVRDNALID---ARREAKNIIKEAKE 582
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
+ K +QL S K+ + + L ++++ E +K++K+
Sbjct: 583 EADKILKDIRQLERMGYSSDARRKLEEERKKLKDKLD--SIEEKEIKTVHKGEALKNVKE 640
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V ++S +K V+ +K +++VQ G MK D+
Sbjct: 641 ------------GDEVLLASINQKVIVLSKPDNKGDVLVQAGIMKITANIKDL 681
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 67/303 (22%), Positives = 141/303 (46%), Gaps = 20/303 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQ-KHGS 111
S++VLE++K+ + ++ T ++ + L + Y+ L+ET A ++ G+
Sbjct: 5 SIKVLEFNKIQEILKNYTCTKAAKD-IIEDLKPYDSMYE-VREHLEETKEAFKLLITKGA 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ GV ++S I + S L P + L + A+L+ + + + +E++
Sbjct: 63 PPFE--GV--YDIRSGISLAEKGSALLPGQLLKIAAVLRCARRFKEYINHKEEEES---- 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ L + +F + + I ++ + I D AS L R + L+ K Y + D
Sbjct: 115 -YRVLENICEGIFSLPKIEEEIFNAIEGEDEIADRASSTLYNIR---RSLKEKNYSVRDK 170
Query: 232 LIRNENNESLFLE--VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+ + S +L+ + ++ G R + A+ + + GL+ SS+G IEP+S V L
Sbjct: 171 INSLVRSYSSYLQENIYTVRGDRYVLPVKAEHKGAVPGLVHDQSSTGATLFIEPMSLVNL 230
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+E+++ E +L L+ K+ ++ ++ N + +LD + A+A ++ + T
Sbjct: 231 NNEIKELMLKEKAEIERILTVLSAKINANITGVKTDANIVWELDFIFAKAKFASEYNCTC 290
Query: 347 PNI 349
P I
Sbjct: 291 PTI 293
>gi|306828937|ref|ZP_07462129.1| DNA mismatch repair protein MutS [Streptococcus mitis ATCC 6249]
gi|304429115|gb|EFM32203.1| DNA mismatch repair protein MutS [Streptococcus mitis ATCC 6249]
Length = 778
Score = 212 bits (540), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 138/391 (35%), Positives = 209/391 (53%), Gaps = 50/391 (12%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V D+ ++ +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVRHPLVKNAVANDVHFGKELTAIVITGPNTGGKTIMLKTLGLTQLMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+S+ SL+LLDE+GAGT+
Sbjct: 356 ADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILSKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIETAFVQNASMEFDTATLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSDVIVGDASQQVNQDN-DVNRIIEQLE-------EQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA L + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVELALSESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSA--SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVK 784
+H ++ QL+P K+ + L+ N
Sbjct: 586 ------LHSKS-QLKPHEIIEAKAELKKLAPEKVYLSKN--------------------- 617
Query: 785 DIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
K + K+ P VGD + V S+G++GT+
Sbjct: 618 --KVLQKAKKKRAPRVGDDIVVISYGQRGTL 646
>gi|417939821|ref|ZP_12583109.1| MutS2 family protein [Streptococcus oralis SK313]
gi|343388702|gb|EGV01287.1| MutS2 family protein [Streptococcus oralis SK313]
Length = 712
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 215/389 (55%), Gaps = 46/389 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V D+ ++ +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVRHPLVKNAVANDVHFGKELTTIVITGPNTGGKTIMLKTLGLTQLMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIETAFVQNASMEFDTASLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSDVIVGDASQQVNQDN-DVNRIIEQLE-------EQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA L + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVELALSESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K + ++ +KV+ + + V++
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------AELKKLAPEKVD---LSKNKVLQ-- 621
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ K+ P VGD + V S+G++GT+
Sbjct: 622 ----KAKKKRAPKVGDDIIVLSYGQRGTL 646
>gi|339499783|ref|YP_004697818.1| MutS2 protein [Spirochaeta caldaria DSM 7334]
gi|338834132|gb|AEJ19310.1| MutS2 protein [Spirochaeta caldaria DSM 7334]
Length = 821
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 102/208 (49%), Positives = 145/208 (69%), Gaps = 1/208 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + +TR ++ITGPNTGGKT+ LKTVGL ++M + GL + ++E +P D V+A
Sbjct: 324 VPIDLSMDSETRTVIITGPNTGGKTVTLKTVGLFILMNQFGLAVPAAEGTSLPLVDGVYA 383
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+SQSLSTFS H+ I +II+ +TS SLVLLDE+G+GT+P EG+A+ M+LL+ F
Sbjct: 384 DIGDEQSISQSLSTFSSHMTNIASIIAAATSHSLVLLDELGSGTDPEEGSAIAMALLDHF 443
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
E+G+ + + TTHH LK Y+ +NA ++FD L PTY I+ G+PG S A+ IA
Sbjct: 444 IETGARV-LVTTHHSILKNYGYTKPNVQNASVDFDSRTLSPTYHIIMGIPGESRALEIAS 502
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVII 652
R GLP ++ AR +++ +II
Sbjct: 503 RNGLPQSILDRARSYLDEERTDVSALII 530
>gi|401684068|ref|ZP_10815951.1| MutS2 family protein [Streptococcus sp. BS35b]
gi|418974669|ref|ZP_13522578.1| MutS2 family protein [Streptococcus oralis SK1074]
gi|383348040|gb|EID25999.1| MutS2 family protein [Streptococcus oralis SK1074]
gi|400186373|gb|EJO20585.1| MutS2 family protein [Streptococcus sp. BS35b]
Length = 778
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 215/389 (55%), Gaps = 46/389 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V D+ ++ +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVRHPLVKNAVANDVHFGKELTAIVITGPNTGGKTIMLKTLGLTQLMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIETAFVQNASMEFDTASLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSDVIVGDASQQVNQDN-DVNRIIEQLE-------EQTFESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA L + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVELALSESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K + ++ +KV+ + + V++
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------AKLKKLAPEKVD---LSKNKVLQ-- 621
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ K+ P VGD + V S+G++GT+
Sbjct: 622 ----KAKKKRAPKVGDDIIVLSYGQRGTL 646
>gi|157363912|ref|YP_001470679.1| MutS2 family protein [Thermotoga lettingae TMO]
gi|157314516|gb|ABV33615.1| MutS2 family protein [Thermotoga lettingae TMO]
Length = 770
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 176/618 (28%), Positives = 294/618 (47%), Gaps = 105/618 (16%)
Query: 50 VYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKH 109
VY +L L++DK+ V FA ++ G++ L ++ + DE NA E K
Sbjct: 3 VY-TLERLDFDKIVSIVKKFALSNCGKK-LLESFKPVDNPH-------DELNAVDEFIKI 53
Query: 110 GSCSLDLTGVDLSLVK--SAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDA 167
D+ +L+L+ ++ A L E L + LL ++ +L +
Sbjct: 54 VKSEYDILPSNLTLIDQDDIFEKIESAQTLGSEELLKMADLLSIIGVVKKNL-------S 106
Query: 168 DLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQ 227
DL F Q+ L +++ I + +DE+G ++D+AS LK+ R + + + +K+ +
Sbjct: 107 DLADDFRT-KQLSGSLGNYTKMVEEIHKCIDENGWVRDNASEKLKEIRDEQKKITKKIRK 165
Query: 228 LMDMLIRNENNESLFLE--VSSIH-GRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLS 282
++ + + N FL+ V++I GR A S KG++ S SS+ + +EP
Sbjct: 166 EIENFVNSHRN---FLQEPVATIRDGRHVFPVKASYKSQIKGIVHSVSSTAVTYFVEPEQ 222
Query: 283 AVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSF 342
VPLN+ +++ R +L LT ++ + +I+ L + +D + ARA ++L +
Sbjct: 223 FVPLNNNIRELRDQEQDEINKILRDLTLRLFDNWRKIKSDLQTLAYIDSLYARAVFALKY 282
Query: 343 GGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDL 402
++ P +E I L A HPL+ Q
Sbjct: 283 NA---HVIYPS-------------------QEGVIKLISARHPLIDPQ------------ 308
Query: 403 ESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITG 462
+V A+++ +A+ LVITG
Sbjct: 309 --------------------------------KVVAIDVE--------LAKDKCGLVITG 328
Query: 463 PNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGH 522
PNTGGKT+ LKTVGL M +G + + +K+P F + D+GDEQ + Q+LSTFS H
Sbjct: 329 PNTGGKTVTLKTVGLFCSMMMAGFPLTCDKNSKLPGFSKIVIDVGDEQDIQQNLSTFSSH 388
Query: 523 LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582
+ I +S + +LVLLDE+G+GT+P+EG AL +++++ +SG IATTH +K
Sbjct: 389 MANIARALSIADQTTLVLLDELGSGTDPMEGAALALAIMDKLKQSGCKF-IATTHLTPVK 447
Query: 583 TLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642
++D F +A +EFD LKPTY++L GVPG S A IA +LG+ +++NAR+L G
Sbjct: 448 VYAANDDNFVSASVEFDPETLKPTYRVLMGVPGASHAFEIARKLGVDETILENARRLMGE 507
Query: 643 ASAEINEVIIEMERFKTQ 660
I + I E+++ Q
Sbjct: 508 DYMNIEKAI---EKYQKQ 522
>gi|374578851|ref|ZP_09651945.1| MutS2 family protein [Desulfosporosinus youngiae DSM 17734]
gi|374414933|gb|EHQ87368.1| MutS2 family protein [Desulfosporosinus youngiae DSM 17734]
Length = 788
Score = 212 bits (539), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 137/414 (33%), Positives = 216/414 (52%), Gaps = 39/414 (9%)
Query: 435 QVSALELAHP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
Q+ ++ HP VP+ + + LVITGPNTGGKT+ LK VGL M +SGL I
Sbjct: 300 QMKLVQARHPLISGGVVPLSLELGIDFDTLVITGPNTGGKTVALKVVGLMAAMNQSGLQI 359
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ +++ F +FADIGDEQS+ QSLSTFSGH+K I II+++ +SLVLLDE+GAGT
Sbjct: 360 PAESDSRMGVFTQIFADIGDEQSVEQSLSTFSGHMKNIVEIINRADGRSLVLLDEVGAGT 419
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG AL M +L E G T++TTH+G LKT Y +NA +EFD L+PTY+
Sbjct: 420 DPTEGAALAMGILAELHERGC-RTVSTTHYGALKTFAYETPRVKNASVEFDTETLRPTYR 478
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
+L G+PG+S+A IA RLGL V++ A N + E E +E++ E
Sbjct: 479 LLIGIPGKSNAFTIAGRLGLSERVLEKA-----------NTFVTEREMQVADLIENLGET 527
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSAS- 727
+ L K T R+ +E K ++ + + ++ A +L
Sbjct: 528 HREI----ELEKEKAETGRRAVEKQTKALEEKSIRLDEEFELLMAMARDEANELIRGVKR 583
Query: 728 QARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIK 787
+A +++ + L+ Q K + H +++ K++H + +K
Sbjct: 584 EADAIIEELKAALKKENKQQQDIEKARQGFHRISA--------KLDHG--------RQVK 627
Query: 788 QSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
+S + +G V+++ +KG V+K+ + E++VQ G MK ++ T++
Sbjct: 628 RSGSELTADQIMLGQTVYMTKLRQKGQVVKLPNASGEVLVQAGIMKVMVPLTEL 681
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 95/198 (47%), Gaps = 4/198 (2%)
Query: 173 FMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDML 232
F L ++ + + L I + + EDG + D+ASP L R + L+ ++ + ++
Sbjct: 115 FPGLWDIVFPIEPQKVLEDEITRCISEDGKVADNASPELADLRRSINRLQNRIRESLEGT 174
Query: 233 IRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPLND 288
+RN + + + ++ R I + + SF G++ S+SG IEP+ V L +
Sbjct: 175 LRNSGYQKMLQDPIITQRSDRYVIPIKQEYRTSFPGIVHDQSASGATLFIEPMPVVHLGN 234
Query: 289 ELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPN 348
EL++ + + +L L+ +++ DEI + + QLD+V A+A S++ +P
Sbjct: 235 ELREVILKEQREVQRILQMLSAQIEARADEIADLHEALAQLDLVVAKAHLSVTMNAGTPE 294
Query: 349 IFLPQDMKRSLTHEPVTS 366
+ Q MK P+ S
Sbjct: 295 LVAGQQMKLVQARHPLIS 312
>gi|291527503|emb|CBK93089.1| MutS2 family protein [Eubacterium rectale M104/1]
Length = 792
Score = 212 bits (539), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 131/398 (32%), Positives = 217/398 (54%), Gaps = 28/398 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + + + L+ITGPNTGGKT+ LKTVGL +M ++GLHI +++ +K+ F+ VFA
Sbjct: 317 VPIDVRLGEEYKQLIITGPNTGGKTVSLKTVGLLTLMGQAGLHIPAADRSKLAIFEDVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I+ ++ +SL L DE+ +GT+P EG AL +S+L
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVKILEKADDRSLCLFDELCSGTDPTEGAALAISILNRL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ G+ +T+ATTH+ ELK S D ENAC EF+ L PTY++L G+PG+S+A I+
Sbjct: 437 HQYGA-ITMATTHYSELKVYALSTDGVENACCEFNVETLSPTYRLLIGIPGKSNAFAISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
+LGL ++++A+ + ++I +E + Q +E L N +K +
Sbjct: 496 KLGLDENIIEDAKSRINDNDLDFEDLIASLES-QRQTIEKEQ-------LEINSYKAEIE 547
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+K LE ++ ++ K D ++ ++ ++ A+ L K +
Sbjct: 548 KLKKQLE----EKNERIDKSKD------KILREANEEAYKILQDAKELADKTIRNFNKYG 597
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
+++ K + L DK + + + K ++P+ R +GD V
Sbjct: 598 QGQAPMSQMEKERSALRDKMN----DKEKKLSDIKKNTAKANHKAPKKLR-----IGDSV 648
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
V S KGTV + +K ++ VQ+G ++ ++ D+V
Sbjct: 649 LVLSLNLKGTVHTLPNAKGDLYVQMGILRSLVNINDLV 686
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 147/304 (48%), Gaps = 24/304 (7%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSL 114
+ LE++K+ +SS+A ++ L+ L I Y+ +R L T A + + +
Sbjct: 7 KTLEYNKILTMLSSYAACDETKKRCLS-LEPITDLYE--IRHLQTTTADALSRLYKDSGV 63
Query: 115 DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI---KEDA--DL 169
G+ V ++++ + L E L + +LL+ ++ ++ R+A+ K+D+ L
Sbjct: 64 SFVGI--HNVHASLKRLDIGGALNTTELLRICSLLEVAKRVKAYGRSAMDNEKQDSLSGL 121
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ P++ +L I + + + I D ASP L + R ++ + +++ +
Sbjct: 122 FAGIEPVS----------ALCDEIKRCILSEEEIADDASPELFKIRKSIRGMNDRIHAQL 171
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
L+ N + + V+ GR C+ A+ + + G++ SS+G IEP++ V
Sbjct: 172 TKLMNNSTTRTYLQDAVVTMRDGRYCLPVKAEAKGNVPGMMHDQSSTGSTLFIEPMAVVN 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+EL++ + E +L AL++K+ ++ +E+ + +LD + A+A + S+ G
Sbjct: 232 LNNELKELFIKEQEEIEKILAALSDKVAMNAAALEQDYEILSELDFIFAKANLAKSYNGV 291
Query: 346 SPNI 349
+P+
Sbjct: 292 APDF 295
>gi|417934437|ref|ZP_12577757.1| MutS2 family protein [Streptococcus mitis bv. 2 str. F0392]
gi|340771007|gb|EGR93522.1| MutS2 family protein [Streptococcus mitis bv. 2 str. F0392]
Length = 778
Score = 212 bits (539), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 137/389 (35%), Positives = 216/389 (55%), Gaps = 46/389 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V D+ ++ +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVRHPLVKNAVANDVHFGKELTAIVITGPNTGGKTIMLKTLGLTQLMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + +++ F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADKGSRIGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIETAFVQNASMEFDTASLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSDVIVGDASQQVNQDN-DVNRIIEQLE-------EQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA L + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVELALNESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K ++ ++ +KV+ + + V++
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------ADLKKMAPEKVD---LSKNKVLQ-- 621
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ K+ P VGD + V S+G++GT+
Sbjct: 622 ----KAKKKRAPKVGDDIVVLSYGQRGTL 646
>gi|385262380|ref|ZP_10040486.1| MutS2 family protein [Streptococcus sp. SK643]
gi|385190687|gb|EIF38127.1| MutS2 family protein [Streptococcus sp. SK643]
Length = 778
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 213/391 (54%), Gaps = 46/391 (11%)
Query: 433 EMQVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487
+ ++ L HP V DI + +VITGPNTGGKTI LKT+GL +MA+SGL
Sbjct: 294 QQEIQLLHARHPLVKNAVANDIHFGKDLTAIVITGPNTGGKTIMLKTLGLTQVMAQSGLP 353
Query: 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAG 547
IL+ + ++V FD +FADIGDEQS+ QSLSTFS H+ I I+ Q SL+LLDE+GAG
Sbjct: 354 ILADKGSRVAVFDQIFADIGDEQSIEQSLSTFSSHMTNIVQILGQVNQNSLLLLDELGAG 413
Query: 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607
T+P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY
Sbjct: 414 TDPQEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIETAFVQNASMEFDTASLRPTY 472
Query: 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHE 667
+ + GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E
Sbjct: 473 RFMQGVPGRSNAFEIAKRLGLSEVIVGDASQQVDQDN-DVNRIIEQLE-------EQTLE 524
Query: 668 ARHFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCP 724
+R L R + + L+ R K+ ++ ++ K + AA + + Q+
Sbjct: 525 SRKRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVDMALSESDQILK 584
Query: 725 SASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVK 784
+ +H ++ QL+P H K + ++ +KV+ + + V++
Sbjct: 585 N-------LHSKS-QLKP------HEIIEAK------AKLKKLAPEKVD---LSKNKVLQ 621
Query: 785 DIKQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ K+ P VGD + V S+G++GT+
Sbjct: 622 ------KAKKKRAPKVGDDIIVLSYGQRGTL 646
>gi|430847896|ref|ZP_19465729.1| MutS2 protein [Enterococcus faecium E1133]
gi|430849196|ref|ZP_19466977.1| MutS2 protein [Enterococcus faecium E1185]
gi|431748902|ref|ZP_19537654.1| MutS2 protein [Enterococcus faecium E2297]
gi|430536272|gb|ELA76648.1| MutS2 protein [Enterococcus faecium E1133]
gi|430538042|gb|ELA78341.1| MutS2 protein [Enterococcus faecium E1185]
gi|430612427|gb|ELB49467.1| MutS2 protein [Enterococcus faecium E2297]
Length = 786
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E R+F+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRYFVSEAQELHDDL 553
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELNRFINDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|331266978|ref|YP_004326608.1| putative DNA mismatch repair protein, MutS2 family protein
[Streptococcus oralis Uo5]
gi|326683650|emb|CBZ01268.1| putative DNA mismatch repair protein, MutS2 family protein
[Streptococcus oralis Uo5]
Length = 778
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 215/389 (55%), Gaps = 46/389 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V D+ ++ +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVRHPLVKNAVANDVHFGKELTAIVITGPNTGGKTIMLKTLGLTQLMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADKGSRVGVFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIETAFVQNASMEFDTASLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSDVIVGDASQQVNQDN-DVNRIIEQLE-------EQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA L + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVELALSESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K + ++ +KV+ + + V++
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------AELKKLAPEKVD---LSKNKVLQ-- 621
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ K+ P VGD + V S+G++GT+
Sbjct: 622 ----KAKKNRAPKVGDDIIVLSYGQRGTL 646
>gi|261208743|ref|ZP_05923180.1| DNA mismatch repair protein MutS [Enterococcus faecium TC 6]
gi|289565573|ref|ZP_06446020.1| MutS2 protein [Enterococcus faecium D344SRF]
gi|260077245|gb|EEW64965.1| DNA mismatch repair protein MutS [Enterococcus faecium TC 6]
gi|289162655|gb|EFD10508.1| MutS2 protein [Enterococcus faecium D344SRF]
Length = 786
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E R+F+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRYFVSEAQELHDDL 553
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELNRFINDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|168181815|ref|ZP_02616479.1| MutS2 family protein [Clostridium botulinum Bf]
gi|237796578|ref|YP_002864130.1| recombination and DNA strand exchange inhibitor protein
[Clostridium botulinum Ba4 str. 657]
gi|259511153|sp|C3KTI4.1|MUTS2_CLOB6 RecName: Full=MutS2 protein
gi|182674997|gb|EDT86958.1| MutS2 family protein [Clostridium botulinum Bf]
gi|229262891|gb|ACQ53924.1| MutS2 family protein [Clostridium botulinum Ba4 str. 657]
Length = 788
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 141/413 (34%), Positives = 221/413 (53%), Gaps = 37/413 (8%)
Query: 436 VSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
V +E HP VPI + + + L+ITGPNTGGKT+ LKTVGL +MA SGL I
Sbjct: 299 VDIIEGRHPLIDRREVVPISVKLGEEFTSLMITGPNTGGKTVTLKTVGLIHLMAMSGLMI 358
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ E + + +F++VFADIGDEQS+ QSLSTFS H+K I I+ ++ SLVL DE+GAGT
Sbjct: 359 PARENSVISYFNNVFADIGDEQSIEQSLSTFSSHMKNIVEIMDKADENSLVLFDELGAGT 418
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG AL +S+LE + G+ + IATTH+ ELK + ENA +EFD L+PTY+
Sbjct: 419 DPTEGAALAISILENLRKRGAKI-IATTHYSELKAYALRKEGVENASVEFDVETLRPTYR 477
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
+L G+PG+S+A I++RLGLP ++ AR+ + E+I + + + ++ +A
Sbjct: 478 LLIGIPGKSNAFEISKRLGLPDYIIDFARENISNENIRFEELI---QNLQEKSIKAQEDA 534
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
R L+ N L+ R + ++ +QK+ D A I + A+ + A +
Sbjct: 535 R----LAEN-----LKLERDKEKKKYEEKLEGLQKVRDNALID---ARREAKNIIKEAKE 582
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
+ K +QL S K+ + + L ++++ E +K++K+
Sbjct: 583 EADKILKDIRQLERMGYSSDARRKLEEERKKLKDKLD--SIEEKEIKTVHKGEALKNVKE 640
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V ++S +K V+ +K +++VQ G MK D+
Sbjct: 641 ------------GDEVLLASINQKVIVLSKPDNKGDVLVQAGIMKITANIKDL 681
Score = 47.0 bits (110), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 66/303 (21%), Positives = 139/303 (45%), Gaps = 20/303 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQ-KHGS 111
S++VLE++K+ + ++ T G++ + L + Y+ L+ET A ++ G+
Sbjct: 5 SIKVLEFNKIQEILKNYTCTKAGKD-IIEDLKPYDSVYE-VREHLEETKEAFKLLITKGA 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ GV +++ I + S L P + L + A+L+ + + + +E++
Sbjct: 63 PPFE--GV--YDIRNGIYLAEKGSALLPGQLLKIAAVLRCARRFREYINHKEQEES---- 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ L + +F + + I ++ + I D AS L R + L+ K Y + D
Sbjct: 115 -YRVLENICEGIFSLPKIEEEIFNAIEGEDEIADRASSTLYNIR---RSLKEKNYSVRDK 170
Query: 232 LIRNENNESLFLE---VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+ + S +L+ + R + A+ + + GL+ SS+G IEP+S V L
Sbjct: 171 INSLVRSYSSYLQENIYTVRRDRYVLPVKAEHKGAVPGLVHDQSSTGATLFIEPMSLVNL 230
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+E+++ E +L L+ K+ ++ ++ N + +LD + A+A ++ + T
Sbjct: 231 NNEIKELMLKEKAEIERILTVLSAKINANITGVKTDANIVWELDFIFAKAKFASEYNCTC 290
Query: 347 PNI 349
P I
Sbjct: 291 PTI 293
>gi|431374601|ref|ZP_19510289.1| MutS2 protein [Enterococcus faecium E1627]
gi|430583225|gb|ELB21614.1| MutS2 protein [Enterococcus faecium E1627]
Length = 786
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI I + + +VITGPNTGGKTI LKT+GL +M ++GL I + E +++ F+ VFADIG
Sbjct: 320 DITIGKDYQAIVITGPNTGGKTITLKTLGLLQLMGQAGLPIPAGEESQIGIFEEVFADIG 379
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ QSLSTFS H+ +I+S+ +SLVL DE+GAGT+P EG AL +++L+ +
Sbjct: 380 DEQSIEQSLSTFSSHMTNTVDILSKVNEKSLVLFDELGAGTDPQEGAALAIAILDDLGKK 439
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
S +ATTH+ ELK Y+ NA MEFD L PTY++L GVPGRS+A I+ RLG
Sbjct: 440 -SAYVMATTHYPELKVYGYNRANTINASMEFDVDTLSPTYRLLIGVPGRSNAFEISSRLG 498
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
L V+ A+QL S ++NE+I ++E + E R+F+ ++ LH +L
Sbjct: 499 LDTEVIDEAKQLMNDESQDLNEMITDLENRRKMAETEYLEMRYFVSEAQELHDDL 553
Score = 60.1 bits (144), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 135/302 (44%), Gaps = 18/302 (5%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSC 112
L LE++K+ V F T+ G+E L +L +++ Q L ET +++Q+ G
Sbjct: 6 LETLEFEKVKQMVRQFVVTAQGKEE-LAELVPVSEK-QTITNWLQETEDGLKVQRLRGGI 63
Query: 113 SLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLS--LRAAIKEDADLY 170
+ L ++ ++ + + L V L Q S L + L I + +D
Sbjct: 64 PIP----KLENIRPHMKRIEIGADLNG------VELAQVSRVLSTTSELNRFINDLSDSE 113
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMD 230
I F L QL L + + + +DEDG + D ASP LK R ++ E+ + + +D
Sbjct: 114 IEFARLYMWADQLVTIPVLSRRLKEAIDEDGRVTDDASPELKSIRQNIRRSEQAVREQLD 173
Query: 231 MLIRNENNESLFLEVSSI-HGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVPLN 287
++R +N + L + ++ + R I + G ++ S+SG IEP V LN
Sbjct: 174 GIVRGKNAKYLSDAIITMRNDRYVIPVKQEYRGVFGGVVHDQSASGQTLFIEPKQVVDLN 233
Query: 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSP 347
+ L+Q + + + +L L+ ++ EI I ++D++NA+A + P
Sbjct: 234 NRLRQYQIAERNEIQRILSELSAELVPHRQEIIHNAYVIGKMDLMNAKARFGKEVKAIVP 293
Query: 348 NI 349
I
Sbjct: 294 GI 295
>gi|417794466|ref|ZP_12441720.1| MutS2 family protein [Streptococcus oralis SK255]
gi|334269366|gb|EGL87785.1| MutS2 family protein [Streptococcus oralis SK255]
Length = 778
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 139/389 (35%), Positives = 214/389 (55%), Gaps = 46/389 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V DI ++ +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVRHPLVKNAVANDIHFGKELTAIVITGPNTGGKTIMLKTLGLTQLMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADRGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIETAFVQNASMEFDTASLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSDVIVGDASQQVNQDN-DVNRIIEQLE-------EQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA L + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVELALSESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K + ++ +KV+ + + V++
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------AELKKLAPEKVD---LSKNKVLQ-- 621
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ K+ P VGD + V S+G++GT+
Sbjct: 622 ----KAKKKRAPKVGDDIVVLSYGQRGTL 646
>gi|347752968|ref|YP_004860533.1| MutS2 family protein [Bacillus coagulans 36D1]
gi|347585486|gb|AEP01753.1| MutS2 family protein [Bacillus coagulans 36D1]
Length = 784
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 158/238 (66%), Gaps = 1/238 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP DI I ++ +VITGPNTGGKTI LKT+GL +MA++GL I + + +++ F VFA
Sbjct: 318 VPNDITIGQEYTTIVITGPNTGGKTITLKTIGLCTLMAQAGLQIPALDGSEMAVFKEVFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I+ + QSLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQSLSTFSSHMTNIVEILKRVDDQSLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ + + +ATTH+ ELK Y+ + NA +EFD L PTY++L GVPGRS+A I+
Sbjct: 438 YKREARV-VATTHYPELKAYAYNREGVVNASVEFDVETLSPTYRLLIGVPGRSNAFEISR 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNL 682
RLGL ++++A+ L GA + E+ +I +E + + + EA+ L + LH++L
Sbjct: 497 RLGLSPSIIEHAQSLIGADTNEVENMIAALESARREAEKERQEAQELLKDAEELHRDL 554
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 152/304 (50%), Gaps = 21/304 (6%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
++ LE+DK+ + + A + LG E + L+ + +Y++ +R+ +ET+ A ++
Sbjct: 6 IKTLEFDKIKNLLLEHASSPLGAE-KIEALFP-SSSYEEVVRMQEETDEAAQV------- 56
Query: 114 LDLTG-VDLSLVKSAIREVRRAS---PLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
L L G V L + R ++RA+ L P E + + + + S T++ + +E+ +L
Sbjct: 57 LRLKGHVPLFGIYDIRRHLKRAAIGGRLNPQELVQIASTIHVSRTMKRFIEGITEEETEL 116
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I LT M+ ++ V L I VDE+G I DSAS L+Q R ++ ER++ + +
Sbjct: 117 PI----LTSMVDRIAVLTPLEHEIRNAVDENGEILDSASETLRQIRHGLRGTERRIREKL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVP 285
+ IR +N + + ++ + R CI + + G ++ SSSG IEP S V
Sbjct: 173 EGYIRGKNAAKMLSDAIITIRNDRYCIPVKQEYRANYGGIVHDQSSSGQTLFIEPQSVVD 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN++L++ + E +L L+ + E+E ++ + D + A+A Y S G+
Sbjct: 233 LNNQLREWHLKEQQEVERILSELSAAVAAAGGELETIVEILADFDFMFAKALYGRSIKGS 292
Query: 346 SPNI 349
P I
Sbjct: 293 KPVI 296
>gi|386581264|ref|YP_006077668.1| DNA mismatch repair protein [Streptococcus suis SS12]
gi|353733410|gb|AER14420.1| DNA mismatch repair protein [Streptococcus suis SS12]
Length = 777
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 149/223 (66%), Gaps = 5/223 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
+A PVP D++ + +VITGPNTGGKTI LKT+GL +MA+SGL IL+ + ++V F
Sbjct: 307 IAKPVPNDLYFGSQLTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I+ + SL+L DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHTVEILRAADQDSLILFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
L+ G + T+ATTH+ ELK ENA MEFD L+PTYK + GVPGRS+A
Sbjct: 427 LDDLRLRG-IKTMATTHYPELKAYGIETSGIENASMEFDSNSLRPTYKFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
IA RLGL I++Q+A Q + +++N +I E+ ++Q +E
Sbjct: 486 EIARRLGLSDIIIQSA-QSWTDTDSDVNRII---EKLESQTVE 524
>gi|146317891|ref|YP_001197603.1| mismatch repair ATPase [Streptococcus suis 05ZYH33]
gi|146320079|ref|YP_001199790.1| mismatch repair ATPase [Streptococcus suis 98HAH33]
gi|253751124|ref|YP_003024265.1| DNA mismatch repair protein [Streptococcus suis SC84]
gi|229486384|sp|A4VZ51.1|MUTS2_STRS2 RecName: Full=MutS2 protein
gi|229486386|sp|A4VSW4.1|MUTS2_STRSY RecName: Full=MutS2 protein
gi|145688697|gb|ABP89203.1| Mismatch repair ATPase (MutS family) [Streptococcus suis 05ZYH33]
gi|145690885|gb|ABP91390.1| Mismatch repair ATPase (MutS family) [Streptococcus suis 98HAH33]
gi|251815413|emb|CAZ50988.1| putative DNA mismatch repair protein [Streptococcus suis SC84]
Length = 778
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 149/223 (66%), Gaps = 5/223 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
+A PVP D++ + +VITGPNTGGKTI LKT+GL +MA+SGL IL+ + ++V F
Sbjct: 308 IAKPVPNDLYFGSQLTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFK 367
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I+ + SL+L DE+GAGT+P EG +L M++
Sbjct: 368 EIFADIGDEQSIEQSLSTFSSHMTHTVEILRAADQDSLILFDELGAGTDPQEGASLAMAI 427
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
L+ G + T+ATTH+ ELK ENA MEFD L+PTYK + GVPGRS+A
Sbjct: 428 LDDLRLRG-IKTMATTHYPELKAYGIETSGIENASMEFDSNSLRPTYKFMQGVPGRSNAF 486
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
IA RLGL I++Q+A Q + +++N +I E+ ++Q +E
Sbjct: 487 EIARRLGLSDIIIQSA-QSWTDTDSDVNRII---EKLESQTVE 525
Score = 39.3 bits (90), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 73/328 (22%), Positives = 139/328 (42%), Gaps = 37/328 (11%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCS 113
+ LE+ K+ + + T G E L QL + + ++ + T+ A ++ S
Sbjct: 6 IETLEFHKVRQKIEPYLLTEQGFE-ELRQLEPMVEVHRIQQAFDELTDIAQIFVENPYFS 64
Query: 114 LDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY--I 171
L T S + A+R + + L E LAV +L+ S++L D Y +
Sbjct: 65 LAAT----SDIGPAMRRLELDTDLNIAELLAVKKVLEVSKSL-----------LDFYGNL 109
Query: 172 RFMPLTQMIMQLFVNRSL---IKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
+ L+Q + +LF L ++ +Q +++ G ++D AS L + R +++ E ++ Q+
Sbjct: 110 ENVSLSQQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIREAEDQVRQV 169
Query: 229 MDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLS---------SSSGIGSVIE 279
M +++ + + + SI L R G + L K + S+SG IE
Sbjct: 170 MQDILKTKGD----MLSDSI---LASRNGRNVLPVKNTYRNKIAGVVHDISASGSTVYIE 222
Query: 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYS 339
P + V LN+E+ RA +L L++ ++ I I +D V A+ ++
Sbjct: 223 PRAVVTLNEEISHLRAEERHELNRILQELSDMLRPHGGVIRNNAWLIGHIDFVRAKHLFA 282
Query: 340 LSFGGTSPNIFLPQDMKRSLTHEPVTSK 367
P + QD+ P+ +K
Sbjct: 283 RDHQAVVPKLSEKQDIALLNVRHPLIAK 310
>gi|303233786|ref|ZP_07320440.1| putative recombination and DNA strand exchange inhibitor protein
[Finegoldia magna BVS033A4]
gi|302495220|gb|EFL54972.1| putative recombination and DNA strand exchange inhibitor protein
[Finegoldia magna BVS033A4]
Length = 783
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 145/219 (66%), Gaps = 1/219 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI I++ LVITGPNTGGKT+ LKTVGL +MA+SG+ I E ++V FD++F
Sbjct: 316 VPISIYLGDDYNTLVITGPNTGGKTVTLKTVGLITLMAQSGILIPVDENSEVAIFDNIFT 375
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+K I +I++ T SLVL DE+GAGT+P EG AL +++L F
Sbjct: 376 DIGDEQSIEQSLSTFSAHMKNIVHIVNNITFNSLVLFDELGAGTDPTEGAALAIAILRIF 435
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
S+ TIATTH+ +LK + + +N +EFD L PTYK+ G+PG+S+A I+
Sbjct: 436 LYK-SIRTIATTHYSQLKIFALTEKYVKNGSVEFDVNTLSPTYKLRIGIPGKSNAFEISR 494
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
RLGL ++ NA+++ + +V+ ++E K Q E
Sbjct: 495 RLGLDDDIINNAKEILSQEDKDFEDVLSDIESKKKQIDE 533
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 146/305 (47%), Gaps = 21/305 (6%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL-LDETNAAIEM-QKH 109
++L LE++++ + + ++ LG+ + +L + + +D +R LDET A+ M K
Sbjct: 4 KTLNTLEYNEIKNKIEKLCKSKLGK-SIANKLEPMIE--EDEIRQSLDETYEAMSMIYKF 60
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ + ++ VK++I V + + P L + +L ++ R A + D +
Sbjct: 61 SNPPI----YEIINVKASIMHVSKGGYIVPEVLLKIGQILNSVHDIK---RYAGESDEN- 112
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ + + M+ L + L+ +I + + I D+AS L + R Q +K +
Sbjct: 113 HENYPMIMAMMDSLVEEQDLVATINNAIISEDEISDNASRNLARIR---QTKRQKTENIR 169
Query: 230 DML--IRNENNESLFLEVSSIHG-RLCIRTG-ADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
D + I + N+++L + ++ R I + + SFKG++ SSSG IEP+ V
Sbjct: 170 DKINSILSSNDQALQENIVTMRDDRYVIPVKVSHKSSFKGIVHDHSSSGQTVYIEPMEVV 229
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+EL+ A + +L +++++ D I + + +LD + A+A Y++
Sbjct: 230 ELNNELRMLEAEEREEIIRILKEISDRVYDVKDSIFVDQDVLSKLDFIFAKAKYAIEIDA 289
Query: 345 TSPNI 349
T+P +
Sbjct: 290 TNPKL 294
>gi|253753025|ref|YP_003026165.1| DNA mismatch repair protein [Streptococcus suis P1/7]
gi|253754848|ref|YP_003027988.1| DNA mismatch repair protein [Streptococcus suis BM407]
gi|386577218|ref|YP_006073623.1| DNA structure-specific ATPase involved in suppression of
recombination, MutS family [Streptococcus suis GZ1]
gi|386579197|ref|YP_006075602.1| DNA mismatch repair protein [Streptococcus suis JS14]
gi|386587494|ref|YP_006083895.1| DNA mismatch repair protein [Streptococcus suis A7]
gi|403060908|ref|YP_006649124.1| DNA mismatch repair protein [Streptococcus suis S735]
gi|251817312|emb|CAZ55044.1| putative DNA mismatch repair protein [Streptococcus suis BM407]
gi|251819270|emb|CAR44564.1| putative DNA mismatch repair protein [Streptococcus suis P1/7]
gi|292557680|gb|ADE30681.1| DNA structure-specific ATPase involved in suppression of
recombination, MutS family [Streptococcus suis GZ1]
gi|319757389|gb|ADV69331.1| DNA mismatch repair protein [Streptococcus suis JS14]
gi|354984655|gb|AER43553.1| DNA mismatch repair protein [Streptococcus suis A7]
gi|402808234|gb|AFQ99725.1| DNA mismatch repair protein [Streptococcus suis S735]
Length = 777
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 149/223 (66%), Gaps = 5/223 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
+A PVP D++ + +VITGPNTGGKTI LKT+GL +MA+SGL IL+ + ++V F
Sbjct: 307 IAKPVPNDLYFGSQLTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I+ + SL+L DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHTVEILRAADQDSLILFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
L+ G + T+ATTH+ ELK ENA MEFD L+PTYK + GVPGRS+A
Sbjct: 427 LDDLRLRG-IKTMATTHYPELKAYGIETSGIENASMEFDSNSLRPTYKFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
IA RLGL I++Q+A Q + +++N +I E+ ++Q +E
Sbjct: 486 EIARRLGLSDIIIQSA-QSWTDTDSDVNRII---EKLESQTVE 524
>gi|358068271|ref|ZP_09154738.1| hypothetical protein HMPREF9333_01619 [Johnsonella ignava ATCC
51276]
gi|356693530|gb|EHI55204.1| hypothetical protein HMPREF9333_01619 [Johnsonella ignava ATCC
51276]
Length = 846
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 144/405 (35%), Positives = 212/405 (52%), Gaps = 46/405 (11%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI+I I +LVITGPNTGGKT+ LKTVGL +M +SGLHI + E + +P F +V+A
Sbjct: 374 VPINISIGDDYSLLVITGPNTGGKTVSLKTVGLFTLMGQSGLHIPAFEGSSLPVFKNVYA 433
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFSGH+K I +II ++ SL L DE+GAGT+P EG AL ++LL
Sbjct: 434 DIGDEQSIEQSLSTFSGHMKNIVDIIKKADRSSLCLFDELGAGTDPAEGAALAIALLSHL 493
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ G+ + +AT+H+ ELK + ENAC EF+ L+PTY+I+ G+PG+S+A I+
Sbjct: 494 HKKGATV-LATSHYSELKIFALNTPGIENACCEFNVETLRPTYRIIIGIPGKSNAFAISR 552
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVI--IEMERF-----KTQFLEHVHEARHFLMLSRN 677
+LGLP ++ A++ + E++ IE +RF K + + E
Sbjct: 553 KLGLPEYIIDEAKKNIEDENMSFEEILTKIEHDRFVIENEKKEINNYKAEIEKLKQTYEK 612
Query: 678 LHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRA 737
+ + R ILE R +S A A + ++ + SA S + K
Sbjct: 613 KNSRIQEIRENILEKA---RLEAENILSLAKETADTTINNINK--LTSAKGIGSELEKER 667
Query: 738 QQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEH-PATASSSVVKDIKQSPRVKRTE 796
++LR S + K+E PA S K+ + P+ R
Sbjct: 668 EKLRES-------------------------LKKLEKKPALKISK--KNSAKKPKHLR-- 698
Query: 797 LPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V+V S KGTV + K ++ VQ+G ++ + DI
Sbjct: 699 ---CGDSVYVHSMNLKGTVSSLPNDKGKLYVQMGILRSQVSLDDI 740
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 88/183 (48%), Gaps = 13/183 (7%)
Query: 168 DLYIRFM-PLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLY 226
D+Y + PLTQ+ + I + + + I D+ASP L + Q + ++ K++
Sbjct: 178 DIYFSSLKPLTQIKNE----------IARCILSETEISDNASPRLFELVKQHKNVQSKMH 227
Query: 227 QLMDMLIRNENNESLFLEVSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAV 284
++ L+ + + ++ G C+ AD + G++ S+SG IEP++ +
Sbjct: 228 TVLQSLLESHKEYLMDSIITMKDGAYCLPIRADFKNKVSGIVHDHSASGSTIFIEPMAVI 287
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
N+EL++ + +++L L+ ++ +D+I + + + LD V A+A S +
Sbjct: 288 RFNNELREIEIEKQQEIDNILEDLSSLIRPYIDDINENIKNMAHLDFVYAKAHLSDAMSA 347
Query: 345 TSP 347
+ P
Sbjct: 348 SMP 350
>gi|170761509|ref|YP_001788443.1| recombination and DNA strand exchange inhibitor protein
[Clostridium botulinum A3 str. Loch Maree]
gi|238688791|sp|B1L0S3.1|MUTS2_CLOBM RecName: Full=MutS2 protein
gi|169408498|gb|ACA56909.1| MutS2 family protein [Clostridium botulinum A3 str. Loch Maree]
Length = 788
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 141/413 (34%), Positives = 221/413 (53%), Gaps = 37/413 (8%)
Query: 436 VSALELAHP-------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI 488
V +E HP VPI + + + L+ITGPNTGGKT+ LKTVGL +MA SGL I
Sbjct: 299 VDIIEGRHPLIDRREVVPISVKLGEEFTSLMITGPNTGGKTVTLKTVGLIHLMAMSGLMI 358
Query: 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGT 548
+ E + + +F++VFADIGDEQS+ QSLSTFS H+K I I+ ++ SLVL DE+GAGT
Sbjct: 359 PARENSVISYFNNVFADIGDEQSIEQSLSTFSSHMKNIVEIMDKADENSLVLFDELGAGT 418
Query: 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYK 608
+P EG AL +S+LE + G+ + IATTH+ ELK + ENA +EFD L+PTY+
Sbjct: 419 DPTEGAALAISILENLRKRGAKI-IATTHYSELKAYALRKEGVENASVEFDVETLRPTYR 477
Query: 609 ILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEA 668
+L G+PG+S+A I++RLGLP ++ AR+ + E+I + + + ++ +A
Sbjct: 478 LLIGIPGKSNAFEISKRLGLPDYIIDFARENISNENIRFEELI---QNLQEKSIKAQEDA 534
Query: 669 RHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQ 728
R L+ N L+ R + ++ +QK+ D A I + A+ + A +
Sbjct: 535 R----LAEN-----LKLERDKEKKKYEEKLEGLQKVRDNALID---ARREAKNIIKEAKE 582
Query: 729 ARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQ 788
+ K +QL S K+ + + L ++++ E +K++K+
Sbjct: 583 EADKILKDIRQLERMGYSSDARRKLEEERKKLKDKLD--SIEEKEIKTVHKGEALKNVKE 640
Query: 789 SPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V ++S +K V+ +K +++VQ G MK D+
Sbjct: 641 ------------GDEVLLASINQKVIVLSKPDNKGDVLVQAGIMKITANIKDL 681
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 140/303 (46%), Gaps = 20/303 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQ-KHGS 111
S++VLE++K+ + ++ T ++ + L + Y+ L+ET A ++ G+
Sbjct: 5 SIKVLEFNKIQEILKNYTCTKAAKD-IIEDLKPYDSVYE-VREHLEETKEAFKLLITKGA 62
Query: 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYI 171
+ GV +++ I + S L P + L + A+L+ + + + +E++
Sbjct: 63 PPFE--GV--YDIRNGIYLAEKGSALLPGQLLKIAAVLRCARRFKEYINHKEEEES---- 114
Query: 172 RFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDM 231
+ L + +F + + I ++ + I D AS L R + L+ K Y + D
Sbjct: 115 -YRVLENICEGIFSLPKIEEEIFNAIEGEDEIADRASSILYNIR---RSLKEKNYSVRDK 170
Query: 232 LIRNENNESLFLE--VSSIHG-RLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVPL 286
+ + S +L+ + ++ G R + + + + GL+ SS+G IEP+S V L
Sbjct: 171 INSLVRSYSSYLQENIYTVRGDRYVLPVKVEHKGAVPGLVHDQSSTGATLFIEPMSLVNL 230
Query: 287 NDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTS 346
N+E+++ E +L L+ K+ ++ ++ N + +LD + A+A ++ + T
Sbjct: 231 NNEIKELMLKEKAEIERILTVLSAKINANITGVKTDANIVWELDFIFAKAKFASEYNCTC 290
Query: 347 PNI 349
P I
Sbjct: 291 PTI 293
>gi|423484112|ref|ZP_17460802.1| MutS2 protein [Bacillus cereus BAG6X1-2]
gi|401139138|gb|EJQ46701.1| MutS2 protein [Bacillus cereus BAG6X1-2]
Length = 786
Score = 211 bits (538), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 144/402 (35%), Positives = 222/402 (55%), Gaps = 41/402 (10%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VP +I + + +VITGPNTGGKT+ LKTVG+ V+MA+SGLHI + +++ F ++FA
Sbjct: 318 VPNNIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFA 377
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ Q+LSTFS H+ I +I+ ++ +SLVL DE+GAGT+P EG AL +S+L+
Sbjct: 378 DIGDEQSIEQNLSTFSSHMVNIVDILERADFESLVLFDELGAGTDPQEGAALAISILDEV 437
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
G+ + +ATTH+ ELK Y+ + NA +EFD L PTYK+L GVPGRS+A I++
Sbjct: 438 YNRGARV-VATTHYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISK 496
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
RLGL V+ AR + +I +I ++E + EA S LH+ L
Sbjct: 497 RLGLSDRVIDRARNHISTDTNKIENMIAKLEESQKNAERERKEAEEHRKQSEKLHREL-- 554
Query: 685 TRRKILEHC--ASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRP 742
+R+I+E +R K QK + +++ + +A ++H+ +QLR
Sbjct: 555 -QRQIIEFNDDRDERLLKAQK-------------EGEEKVEAAKKEAEGIIHE-LRQLRK 599
Query: 743 SASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRT---ELPN 799
+ L + ++ A+ +VK KQ VK T +
Sbjct: 600 AQ---------------LANVKDHELIEAKSRLEGAAPELVK--KQKVNVKNTAPKQQLR 642
Query: 800 VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
GD V V +FG+KG ++K + S E VQ+G +K +K +++
Sbjct: 643 AGDEVKVLTFGQKGQLLK-KVSDTEWNVQIGILKMKVKESNM 683
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 147/302 (48%), Gaps = 19/302 (6%)
Query: 53 SLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAA---IEMQKH 109
+LRVLE++K+ + +SLGR+ + S + +++ + L + T+ A I ++ H
Sbjct: 5 TLRVLEYNKVKEQLLEHTASSLGRDKVKNLVPSTD--FEEIVELQETTDEAAKVIRLKGH 62
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ L G+ S ++S ++ + S L P+E + + + + S ++ + ++ +L
Sbjct: 63 ----VPLGGI--SDIRSNVKRAKIGSMLSPHELIEIASTMYGSRQMKRFIEDMVENGVEL 116
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
I L + Q+ L K I + + G + DSAS L+ R Q++ E ++ + +
Sbjct: 117 PI----LVGHVAQIISLYDLEKKITNCIGDGGEVLDSASDKLRGIRNQIRTAESRIREKL 172
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAVP 285
+ + R+ N + + + V+ + R I + G ++ S+SG IEP V
Sbjct: 173 ESMTRSSNAQKMLSDAIVTIRNDRYVIPVKQEYRGVYGGIVHDQSASGQTLFIEPQVIVE 232
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+ LQ+AR + E +L+ LTE++ V+ D + + + LD + A+A Y+ T
Sbjct: 233 LNNALQEARVKEKQEVERILMMLTEEVAVEADIVLSNVEVVANLDFIFAKALYAKRIKAT 292
Query: 346 SP 347
P
Sbjct: 293 KP 294
>gi|227534485|ref|ZP_03964534.1| DNA mismatch repair protein [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|227187884|gb|EEI67951.1| DNA mismatch repair protein [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
Length = 786
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 225/396 (56%), Gaps = 49/396 (12%)
Query: 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIG 507
DI + K + +VITGPNTGGKTI LKT+GL +M +SGL I + + +++ FD VFADIG
Sbjct: 319 DIPLGDKYQAMVITGPNTGGKTITLKTLGLLQLMGQSGLFIPADDESRIGIFDEVFADIG 378
Query: 508 DEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567
DEQS+ Q+LSTFS H+ I +I+ Q + SLVL DE+GAGT+P EG AL +++L+A E
Sbjct: 379 DEQSIEQNLSTFSAHMDNIVHILKQLSQNSLVLFDELGAGTDPQEGAALAIAILDAVGEV 438
Query: 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG 627
G+ + +ATTH+ ELK Y+ NA MEFD L+PTY++L GVPGRS+A +I+ RLG
Sbjct: 439 GAYV-VATTHYPELKLYGYNTAKTINASMEFDSKTLQPTYRLLVGVPGRSNAFDISARLG 497
Query: 628 LPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687
LP ++V+ A+ + + S E+N +I ++E+ + AR L ++++H L +
Sbjct: 498 LPSVIVERAKSMISSDSHELNNMISDLEKQRKAAETAYEAARRQLADAQSVHDELAAAYK 557
Query: 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQS 747
K ++R ++Q+ D A +LV K+ ++ K +QLR
Sbjct: 558 KF----TTERDAQLQQAKDK---ANTLVDKT-----------QTKADKIIKQLR-----Q 594
Query: 748 LHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSP-----RVKRTELP---- 798
+ T G TV E+ A+ + +K + Q R+ R E
Sbjct: 595 MQLTNPG-------------TVK--ENQLIAAKTALKQLHQDEPLQKNRILRREREKQAL 639
Query: 799 NVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+VGD V V+S+ + GT+++ + K+ VQ+G +K
Sbjct: 640 HVGDEVKVASYDQTGTLLE-QFDKKHWQVQLGILKM 674
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 126/306 (41%), Gaps = 31/306 (10%)
Query: 54 LRVLEWDKLCHSVSSFARTSLGREAT-----LTQLWSINQTYQDSLRLLDETNAAIEMQK 108
L+ LE+DK+ ++ T+ GR LT ++ Q LDET
Sbjct: 6 LKTLEYDKIQQALLGQVVTANGRRLVQAMQPLTDPVAVQQA-------LDET-------A 51
Query: 109 HGSCSLDLTG----VDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIK 164
G+ +L L G L + A++ V + L E ++ +LQ + L
Sbjct: 52 DGASALRLKGGIPVPQLENIDPALKRVDIGAVLNGQELASISRVLQTVSAIDKFL----- 106
Query: 165 EDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERK 224
D I F L + L V L + + VD DG++ D ASP L R Q++ +E +
Sbjct: 107 TDLQDQIDFRQLYTLQESLTVLPQLSRRLKTAVDPDGTLTDEASPQLHGVREQIKSIEGE 166
Query: 225 LYQLMDMLIRNENNESLFLEVSSIH-GRLCIRTGADQLSFKGLLLSSSSGIGSV--IEPL 281
+ M R ++ L + +I R I A+ + G ++ S G IEP
Sbjct: 167 IRGKMTNYTRGAQSKYLSDPIVTIRDDRYVIPVKAEYRAKFGGVVHDQSATGQTLFIEPQ 226
Query: 282 SAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341
+ V LN+ L++A+ + +L L+ ++ +I+ + D +NA+A + +
Sbjct: 227 AIVALNNRLREAQLAEVAEINRILAELSNELAPYTGQIKANAAVLGHFDFINAKARLAKA 286
Query: 342 FGGTSP 347
T P
Sbjct: 287 EKATEP 292
>gi|449109474|ref|ZP_21746108.1| MutS2 protein [Treponema denticola ATCC 33520]
gi|448958717|gb|EMB39445.1| MutS2 protein [Treponema denticola ATCC 33520]
Length = 818
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 146/469 (31%), Positives = 236/469 (50%), Gaps = 76/469 (16%)
Query: 193 IMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLE--VSSIHG 250
+ +DE+G ++D P+L+ + +++ +E + + M N+ + + G
Sbjct: 138 VFSFIDENGELQDL--PSLRTIKNKIRSIEDDIDKTMRNYFTNDATRQMLQSNLPTVKDG 195
Query: 251 RLCIRTGADQLSFKGLLLS-----SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVL 305
R I A + +FKG + S SG +EP V N++L A A + +L
Sbjct: 196 RQVI---AVRSNFKGRIPGIIHEYSQSGQTFYLEPEEIVLKNNDLIAAHAEYERELLRLL 252
Query: 306 LALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVT 365
LT ++ + I++ I +LD V A + ++ S N + SL+H
Sbjct: 253 QDLTSQIAEHTENIKEACEAITKLDCVAAASRWA-----HSNNCVFAGSIDLSLSHS--I 305
Query: 366 SKVSSSEREWT---IYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARK 422
K S + + T YL +A HPLL G +A
Sbjct: 306 DKDGSHDSKGTPLAFYLHQARHPLL-----------------------------GKSA-- 334
Query: 423 GEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMA 482
VPID+ +++ RVL+ITGPNTGGKT+ LKT L ++
Sbjct: 335 ----------------------VPIDLKLSKDDRVLIITGPNTGGKTVSLKTAALFALIN 372
Query: 483 KSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLD 542
++G + + ++P+FD + DIGDEQS+ QSLSTFS H+K + IIS++ +SL++LD
Sbjct: 373 QTGWPVPAGPLTRLPYFDFIACDIGDEQSMDQSLSTFSAHMKNVSEIISRAGDKSLIILD 432
Query: 543 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVK 602
E+G+GT+P EG A+ M++L+ E + + + TTHHG LK YS + NA +EF++
Sbjct: 433 ELGSGTDPQEGCAIAMAVLDDLLEKKAFVFV-TTHHGALKNYGYSKESCVNASVEFNQNT 491
Query: 603 LKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVI 651
L PTY+IL GVPG S A++IA+R GLP +++ A G A+++++I
Sbjct: 492 LSPTYRILMGVPGESHAVDIAKRNGLPEHIIEKAHTYLGNNRADVSDLI 540
>gi|415748771|ref|ZP_11476823.1| mutS2 protein [Streptococcus pneumoniae SV35]
gi|381319028|gb|EIC59745.1| mutS2 protein [Streptococcus pneumoniae SV35]
Length = 778
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 137/389 (35%), Positives = 215/389 (55%), Gaps = 46/389 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V D++ + +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVCHPLVKNAVANDVYFGQDLTAIVITGPNTGGKTIMLKTLGLTQVMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQIKTMATTHYPELKAYGIETAFVQNASMEFDTATLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSEVIVGDASQQIDQDN-DVNRIIEQLE-------EQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA + + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVDMALSESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K + ++ +KV+ + + V++
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------AKLKKLAPEKVD---LSKNKVLQ-- 621
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ K+ P VGD + V S+G++GT+
Sbjct: 622 ----KAKKKRAPKVGDDIVVLSYGQRGTL 646
>gi|221231273|ref|YP_002510425.1| DNA mismatch repair protein [Streptococcus pneumoniae ATCC 700669]
gi|415697001|ref|ZP_11456575.1| mutS2 protein [Streptococcus pneumoniae 459-5]
gi|415751480|ref|ZP_11478715.1| mutS2 protein [Streptococcus pneumoniae SV36]
gi|418122717|ref|ZP_12759652.1| mutS2 family protein [Streptococcus pneumoniae GA44378]
gi|418127301|ref|ZP_12764199.1| mutS2 family protein [Streptococcus pneumoniae NP170]
gi|418136468|ref|ZP_12773312.1| mutS2 family protein [Streptococcus pneumoniae GA11663]
gi|418177471|ref|ZP_12814055.1| mutS2 family protein [Streptococcus pneumoniae GA41565]
gi|419472503|ref|ZP_14012356.1| MutS2 family protein [Streptococcus pneumoniae GA13430]
gi|254766603|sp|B8ZLH4.1|MUTS2_STRPJ RecName: Full=MutS2 protein
gi|220673733|emb|CAR68232.1| putative DNA mismatch repair protein [Streptococcus pneumoniae ATCC
700669]
gi|353798190|gb|EHD78520.1| mutS2 family protein [Streptococcus pneumoniae GA44378]
gi|353801106|gb|EHD81414.1| mutS2 family protein [Streptococcus pneumoniae NP170]
gi|353844245|gb|EHE24288.1| mutS2 family protein [Streptococcus pneumoniae GA41565]
gi|353903526|gb|EHE79050.1| mutS2 family protein [Streptococcus pneumoniae GA11663]
gi|379553405|gb|EHZ18489.1| MutS2 family protein [Streptococcus pneumoniae GA13430]
gi|381311085|gb|EIC51910.1| mutS2 protein [Streptococcus pneumoniae SV36]
gi|381319709|gb|EIC60399.1| mutS2 protein [Streptococcus pneumoniae 459-5]
Length = 778
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 137/389 (35%), Positives = 215/389 (55%), Gaps = 46/389 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V D++ + +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVCHPLVKNAVANDVYFGQDLTAIVITGPNTGGKTIMLKTLGLTQVMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQIKTMATTHYPELKAYGIETAFVQNASMEFDTATLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSEVIVGDASQQIDQDN-DVNRIIEQLE-------EQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA + + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVDMALSESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K + ++ +KV+ + + V++
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------AKLKKLAPEKVD---LSKNKVLQ-- 621
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ K+ P VGD + V S+G++GT+
Sbjct: 622 ----KAKKKRAPKVGDDIVVLSYGQRGTL 646
>gi|410658584|ref|YP_006910955.1| Recombination inhibitory protein MutS2 [Dehalobacter sp. DCA]
gi|410661571|ref|YP_006913942.1| Recombination inhibitory protein MutS2 [Dehalobacter sp. CF]
gi|409020939|gb|AFV02970.1| Recombination inhibitory protein MutS2 [Dehalobacter sp. DCA]
gi|409023927|gb|AFV05957.1| Recombination inhibitory protein MutS2 [Dehalobacter sp. CF]
Length = 796
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 134/408 (32%), Positives = 218/408 (53%), Gaps = 42/408 (10%)
Query: 443 HP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKV 496
HP VPI + + + L+ITGPNTGGKT+ LKT+GL +M +SGLHI + +++
Sbjct: 315 HPLLTGPVVPISVGLGMDDQFLIITGPNTGGKTVTLKTIGLMAVMMQSGLHIPAESDSRL 374
Query: 497 PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556
F +F DIGDEQS+ QSLSTFS H+ I +I ++ S+SLVLLDE+GAGT+P EG AL
Sbjct: 375 GIFTRIFVDIGDEQSVEQSLSTFSAHMTNIVDITREADSRSLVLLDELGAGTDPGEGAAL 434
Query: 557 GMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGR 616
M++L E GS +ATTH+G LKT Y+ ENA +EF+ LKPTY++L G+PGR
Sbjct: 435 AMAILAELLERGS-CGVATTHYGALKTFAYNTPGVENASVEFNPETLKPTYRLLTGIPGR 493
Query: 617 SSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSR 676
S+A+ IA+RLGL +++ AR I E + ++ LE++ + + +
Sbjct: 494 SNALAIAQRLGLGSSILEKARSF-----------ISERDTKESDLLENLEDTQREI---- 538
Query: 677 NLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKR 736
L K + +K EH A++ +K ++ + ++ K+ ++ QAR
Sbjct: 539 ELKKRSVEEEQKKAEHKAAELKKKNLELEEK---YEDIMRKAKEEAVDVVRQARLEAEGI 595
Query: 737 AQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTE 796
++++ + + Q+ ++K S V + + + + K
Sbjct: 596 IKEIKEAQKKE--------------RREQEAALEKTRQGLKKLSEKVYETEYTGKNKSGP 641
Query: 797 LPN---VGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDI 841
P G V++ + +KG V++ + E++VQ G +K + ++I
Sbjct: 642 KPGQVEPGQTVYMPNLRQKGQVLQKPDNNNEVLVQTGILKVSVPLSEI 689
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 111/239 (46%), Gaps = 11/239 (4%)
Query: 129 REVR-------RASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIM 181
RE+R R L P E L + L+ + L+ +L + D Y L + +
Sbjct: 71 REIRPYLERCDRGGTLNPEELLEIRDTLKTARRLKNTLIDGGQSGKDQYSELYTLRETVD 130
Query: 182 QLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESL 241
+ + + I + + EDG I D AS L + R + ++++ + +D ++RN + + +
Sbjct: 131 GIVPQKEIEDDISRSISEDGDINDRASEELARLRKAKGISQQRIKESLDGILRNPSYQKM 190
Query: 242 FLE--VSSIHGRLCIRTGADQLS-FKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASV 297
+ ++S R + + S F G++ S+SG IEP++ V L +EL++
Sbjct: 191 LQDNVITSRGDRYVVPIKMEYSSAFPGIVHDQSASGATLFIEPMAVVQLGNELREITLKE 250
Query: 298 TKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMK 356
+ + +L LT K+ + EI + +I+LD + A+A S SP + Q++K
Sbjct: 251 NREVQKILQQLTAKVTARIPEILLLNEALIKLDFILAKARLSEDMEAGSPLVMNKQEVK 309
>gi|417001937|ref|ZP_11941410.1| recombination and DNA strand exchange inhibitor protein
[Anaerococcus prevotii ACS-065-V-Col13]
gi|325479647|gb|EGC82739.1| recombination and DNA strand exchange inhibitor protein
[Anaerococcus prevotii ACS-065-V-Col13]
Length = 781
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/403 (33%), Positives = 219/403 (54%), Gaps = 41/403 (10%)
Query: 440 ELAHP------VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY 493
E HP VPID+ I L+ITGPNTGGKT+ LKTVGL MA++GL I + E
Sbjct: 301 EARHPLLSGKVVPIDVRIGGSYTTLIITGPNTGGKTVSLKTVGLISAMAQTGLFIPADEG 360
Query: 494 AKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553
++V FD +F DIGD QS+ SLSTFS L I I+ ++T +SLVLLDEIG+GT+P+EG
Sbjct: 361 SRVSVFDDIFVDIGDTQSIEMSLSTFSASLTNIVEILKKATDKSLVLLDEIGSGTDPVEG 420
Query: 554 TALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGV 613
AL +S+L + + ++T TTH+ ELK NA +EFD L PTYK+ G
Sbjct: 421 AALAISILNSLTKK-EVMTFTTTHYSELKYYAVETPGVMNASVEFDVDTLSPTYKLEIGT 479
Query: 614 PGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLM 673
PG+S+A I++RLGLP ++++A+ L G + IN+++ E+E K + E +
Sbjct: 480 PGKSNAFEISKRLGLPVEILKDAKDLIGEDNRNINKILEEIEEDKKEIESKNKEIDDY-- 537
Query: 674 LSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLV 733
K + R R ++ E S ++ I +A A ++ K+
Sbjct: 538 -----KKEIARIRNELKEKSKSLSRKEEDIIREAEDKANKILDKA--------------- 577
Query: 734 HKRAQQLRPSA--SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPR 791
+KR+Q + A S++ + + + ++ + + +N+++ +++ + +K K +P+
Sbjct: 578 NKRSQDMLKEAKRSRNANTSDIDRSLNKIRTNYKEGRIER-----QGENLSLKQSKNAPK 632
Query: 792 VKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKW 834
+ VGD+V ++ ++ VI+ K I VQ+G +K
Sbjct: 633 TLK-----VGDMVLIAGLNEEAQVIEAPDHKGNIKVQMGILKM 670
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 138/299 (46%), Gaps = 30/299 (10%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGS 111
++L VLE+ K+ ++ +AR+SL +E + L TY L E A++E +
Sbjct: 4 KTLEVLEYGKILDKLAGYARSSLVKEQ-IHDLRPSTDTYYIKREL--EHAASMEKVIRKN 60
Query: 112 CSLDLTGV-DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLY 170
++DL G+ DLS + + +R+ L P + + V+ LL+ S L I++
Sbjct: 61 GNIDLFGLYDLSDI---VNYIRKNGILDPADLIKVLDLLRVSSYLT-DYGENIED----- 111
Query: 171 IRFMPLTQMIMQLFVNRSLIKSIMQ--VVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
PL + I +K+ + +++E+ I D+AS L+ R Q Q E +
Sbjct: 112 ----PLIKDIFDRISTNDFLKNEIDRSIINEE-EIADNASQTLRNIRRQKQRKENDIRIK 166
Query: 229 MDMLIRNENNESLFLE--VSSIHGRLCIRTGADQLSFKGLLL--SSSSGIGSVIEPLSAV 284
++ I + E + VS GR + ++ S G ++ SSSG IEP + V
Sbjct: 167 LNSYISSSKYEDALQDKVVSVRDGRFVVPVKTNKRSVIGGIVHDKSSSGNTLFIEPAAIV 226
Query: 285 PLNDELQQARASVTKAEE---DVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSL 340
LN++L+ + D L L + V+L E +K+ I ++D + A+A ++L
Sbjct: 227 ELNNQLRDLEIKEEEEIRKILDRLSRLAQAFDVELLENQKL---IARIDFLQAKAKFAL 282
>gi|417090662|ref|ZP_11956028.1| DNA mismatch repair protein [Streptococcus suis R61]
gi|353533437|gb|EHC03091.1| DNA mismatch repair protein [Streptococcus suis R61]
Length = 777
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 149/223 (66%), Gaps = 5/223 (2%)
Query: 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD 500
+A PVP D++ + +VITGPNTGGKTI LKT+GL +MA+SGL IL+ + ++V F
Sbjct: 307 IAKPVPNDLYFGSQLTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFK 366
Query: 501 SVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560
+FADIGDEQS+ QSLSTFS H+ I+ + SL+L DE+GAGT+P EG +L M++
Sbjct: 367 EIFADIGDEQSIEQSLSTFSSHMTHTVEILRVADQDSLILFDELGAGTDPQEGASLAMAI 426
Query: 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAI 620
L+ G + T+ATTH+ ELK ENA MEFD L+PTYK + GVPGRS+A
Sbjct: 427 LDDLRLRG-IKTMATTHYPELKAYGIETSGIENASMEFDSNSLRPTYKFMQGVPGRSNAF 485
Query: 621 NIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
IA RLGL I++Q+A Q + +++N +I E+ ++Q +E
Sbjct: 486 EIARRLGLSDIIIQSA-QSWTDTDSDVNRII---EKLESQTVE 524
>gi|419781259|ref|ZP_14307091.1| MutS2 family protein [Streptococcus oralis SK100]
gi|383184651|gb|EIC77165.1| MutS2 family protein [Streptococcus oralis SK100]
Length = 778
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 215/389 (55%), Gaps = 46/389 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V D+ ++ +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVRHPLVKNAVANDVHFGKELTAIVITGPNTGGKTIMLKTLGLTQLMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADKGSRVGVFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQVKTMATTHYPELKAYGIETAFVQNASMEFDTASLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSDVIVGDASQQVNQDN-DVNRIIEQLE-------EQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA L + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVELALSESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K + ++ +KV+ + + V++
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------AELKKLAPEKVD---LSKNKVLQ-- 621
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ K+ P VGD + V S+G++GT+
Sbjct: 622 ----KAKKKRAPKVGDDIVVLSYGQRGTL 646
>gi|417926121|ref|ZP_12569532.1| recombination and DNA strand exchange inhibitor protein [Finegoldia
magna SY403409CC001050417]
gi|341590342|gb|EGS33586.1| recombination and DNA strand exchange inhibitor protein [Finegoldia
magna SY403409CC001050417]
Length = 783
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 145/219 (66%), Gaps = 1/219 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI I++ LVITGPNTGGKT+ LKTVGL +MA+SG+ I E ++V FD++F
Sbjct: 316 VPISIYLGDDYNTLVITGPNTGGKTVTLKTVGLITLMAQSGILIPVDENSEVAIFDNIFT 375
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+K I +I++ T SLVL DE+GAGT+P EG AL +++L F
Sbjct: 376 DIGDEQSIEQSLSTFSAHMKNIVHIVNNITFNSLVLFDELGAGTDPTEGAALAIAILRIF 435
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
S+ TIATTH+ +LK + + +N +EFD L PTYK+ G+PG+S+A I+
Sbjct: 436 LYK-SIRTIATTHYSQLKIFALTEKYVKNGSVEFDVNTLSPTYKLRIGIPGKSNAFEISR 494
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
RLGL ++ NA+++ + +V+ ++E K Q E
Sbjct: 495 RLGLDDDIINNAKEILSQEDKDFEDVLSDIESKKKQIDE 533
Score = 42.7 bits (99), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 144/305 (47%), Gaps = 21/305 (6%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL-LDETNAAIEM-QKH 109
++L LE++++ + + ++ LG+ + +L + + +D +R LDET A+ M K
Sbjct: 4 KTLNTLEYNEIKNKIEKLCKSKLGK-SIANKLEPMIE--EDEIRQSLDETYEAMSMIYKF 60
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ + ++ VK++I V + + P L + +L ++ R A + D +
Sbjct: 61 SNPPI----YEIINVKASIMHVSKGGYIVPEVLLKIGQILNSVHDIK---RYAGESDEN- 112
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ + + M+ L L+ +I + + I D+AS L + R Q +K +
Sbjct: 113 HENYPMIMAMMDSLVEEPDLVATINNAIISEDEISDNASRNLARIR---QTKRQKTENIR 169
Query: 230 DML--IRNENNESLFLEVSSIHG-RLCIRTG-ADQLSFKGLLLS-SSSGIGSVIEPLSAV 284
D + I + N+++L + ++ R I + + SFKG++ SSSG IEP+ V
Sbjct: 170 DKINSILSSNDQALQENIVTMRDDRYVIPVKVSHKSSFKGIVHDHSSSGQTVYIEPMEVV 229
Query: 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344
LN+EL+ A + +L +++++ D I + +LD + A+A Y++
Sbjct: 230 ELNNELRMLEAEEREEIIRILKEISDRVYDVKDSIFADQEVLSKLDFIFAKAKYAIEIDA 289
Query: 345 TSPNI 349
T+P +
Sbjct: 290 TNPKL 294
>gi|302380376|ref|ZP_07268846.1| putative recombination and DNA strand exchange inhibitor protein
[Finegoldia magna ACS-171-V-Col3]
gi|302311866|gb|EFK93877.1| putative recombination and DNA strand exchange inhibitor protein
[Finegoldia magna ACS-171-V-Col3]
Length = 783
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 145/219 (66%), Gaps = 1/219 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI I++ LVITGPNTGGKT+ LKTVGL +MA+SG+ I E ++V FD++F
Sbjct: 316 VPISIYLGDDYNTLVITGPNTGGKTVTLKTVGLITLMAQSGILIPVDENSEVAIFDNIFT 375
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+K I +I++ T SLVL DE+GAGT+P EG AL +++L F
Sbjct: 376 DIGDEQSIEQSLSTFSAHMKNIVHIVNNITFNSLVLFDELGAGTDPTEGAALAIAILRIF 435
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
S+ TIATTH+ +LK + + +N +EFD L PTYK+ G+PG+S+A I+
Sbjct: 436 LYK-SIRTIATTHYSQLKIFALTEKYVKNGSVEFDVNTLSPTYKLRIGIPGKSNAFEISR 494
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
RLGL ++ NA+++ + +V+ ++E K Q E
Sbjct: 495 RLGLDDDIINNAKEILSQEDKDFEDVLSDIESKKKQIDE 533
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 144/306 (47%), Gaps = 23/306 (7%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL-LDETNAAIEM-QKH 109
++L LE++++ + + ++ LG+ + +L + + +D +R LDET A+ M K
Sbjct: 4 KTLNTLEYNEIKNKIEKLCKSKLGK-SIANKLEPMIE--EDEIRQSLDETYEAMSMIYKF 60
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ + ++ VK++I V + + P L + +L ++ R A + D +
Sbjct: 61 SNPPI----YEIINVKASIMHVSKGGYIVPEVLLKIGQILNSVHDIK---RYAGESDENH 113
Query: 170 YIRFMPLTQMIMQLFVNR-SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
P+ +M V L+ +I + + I D+AS L + R Q +K +
Sbjct: 114 --ENHPMIMAMMDSLVEEPDLVATINNAIISEDEISDNASRNLARIR---QTKRQKTENI 168
Query: 229 MDML--IRNENNESLFLEVSSIHG-RLCIRTG-ADQLSFKGLLLS-SSSGIGSVIEPLSA 283
D + I + N+++L + ++ R I + + SFKG++ SSSG IEP+
Sbjct: 169 RDKINSILSSNDQALQENIVTMRDDRYVIPVKVSHKSSFKGIVHDHSSSGQTVYIEPMEV 228
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+EL+ A + +L +++++ D I + + +LD + A+A Y++
Sbjct: 229 VELNNELRMLEAEEREEIIRILKEISDRVYDVKDSIFVDQDVLSKLDFIFAKAKYAIEID 288
Query: 344 GTSPNI 349
T+P +
Sbjct: 289 ATNPKL 294
>gi|238925261|ref|YP_002938778.1| DNA mismatch repair protein [Eubacterium rectale ATCC 33656]
gi|259511157|sp|C4ZI07.1|MUTS2_EUBR3 RecName: Full=MutS2 protein
gi|238876937|gb|ACR76644.1| DNA mismatch repair protein [Eubacterium rectale ATCC 33656]
Length = 792
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 131/398 (32%), Positives = 216/398 (54%), Gaps = 28/398 (7%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPID+ + + L+ITGPNTGGKT+ LKTVGL +M ++GLHI +++ +K+ F+ VFA
Sbjct: 317 VPIDVRLGEDYKQLIITGPNTGGKTVSLKTVGLLTLMGQAGLHIPAADRSKLAIFEDVFA 376
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+ I I+ ++ +SL L DE+ +GT+P EG AL +S+L
Sbjct: 377 DIGDEQSIEQSLSTFSSHMTNIVKILEKADDRSLCLFDELCSGTDPTEGAALAISILNRL 436
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
+ G+ +T+ATTH+ ELK S D ENAC EF+ L PTY++L G+PG+S+A I+
Sbjct: 437 HQYGA-ITMATTHYSELKVYALSTDGVENACCEFNVETLSPTYRLLIGIPGKSNAFAISS 495
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684
+LGL ++++A+ + ++I +E + Q +E L N +K +
Sbjct: 496 KLGLDENIIEDAKSRINDNDLDFEDLIASLES-QRQTIEKEQ-------LEINSYKAEIE 547
Query: 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSA 744
+K LE ++ ++ K D ++ ++ ++ A+ L K +
Sbjct: 548 KLKKQLE----EKNERIDKSKD------KILREANEEAYKILQDAKELADKTIRNFNKYG 597
Query: 745 SQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLV 804
+++ K + L DK + + + K ++P+ R +GD V
Sbjct: 598 QGQAPMSQMEKERSALRDKMN----DKEKKLSDIKKNTAKANHKAPKKLR-----IGDSV 648
Query: 805 HVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842
V S KGTV + +K ++ VQ+G ++ ++ D+V
Sbjct: 649 LVLSLNLKGTVHTLPNAKGDLYVQMGILRSLVNINDLV 686
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 147/304 (48%), Gaps = 24/304 (7%)
Query: 55 RVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSL 114
+ LE++K+ +SS+A ++ L+ L I Y+ +R L T A + + +
Sbjct: 7 KTLEYNKILTMLSSYAACDETKKRCLS-LEPITDLYE--IRHLQTTTADALSRLYKDSGV 63
Query: 115 DLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAI---KEDA--DL 169
G+ V ++++ + L E L + +LL+ ++ ++ R+A+ K+D+ L
Sbjct: 64 SFVGI--HNVHASLKRLDIGGALNTTELLRICSLLEVAKRVKAYGRSAMDNEKQDSLSGL 121
Query: 170 YIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQLM 229
+ P++ +L I + + + I D ASP L + R ++ + +++ +
Sbjct: 122 FAGIEPVS----------ALCDEIKRCILSEEEIADDASPELFKIRKSIRGMNDRIHAQL 171
Query: 230 DMLIRNENNESLFLE--VSSIHGRLCIRTGAD-QLSFKGLLLS-SSSGIGSVIEPLSAVP 285
L+ N + + V+ GR C+ A+ + + G++ SS+G IEP++ V
Sbjct: 172 TKLMNNSTTRTYLQDAVVTMRDGRYCLPVKAEAKGNVPGMMHDQSSTGSTLFIEPMAVVN 231
Query: 286 LNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345
LN+EL++ + E +L AL++K+ ++ +E+ + +LD + A+A + S+ G
Sbjct: 232 LNNELKELFIKEQEEIEKILAALSDKVAMNAAALEQDYEILSELDFIFAKANLAKSYNGV 291
Query: 346 SPNI 349
+P+
Sbjct: 292 APDF 295
>gi|169824561|ref|YP_001692172.1| DNA mismatch repair protein [Finegoldia magna ATCC 29328]
gi|238687754|sp|B0S1P2.1|MUTS2_FINM2 RecName: Full=MutS2 protein
gi|167831366|dbj|BAG08282.1| DNA mismatch repair protein [Finegoldia magna ATCC 29328]
Length = 783
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 145/219 (66%), Gaps = 1/219 (0%)
Query: 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504
VPI I++ LVITGPNTGGKT+ LKTVGL +MA+SG+ I E ++V FD++F
Sbjct: 316 VPISIYLGDDYNTLVITGPNTGGKTVTLKTVGLITLMAQSGILIPVDENSEVAIFDNIFT 375
Query: 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564
DIGDEQS+ QSLSTFS H+K I +I++ T SLVL DE+GAGT+P EG AL +++L F
Sbjct: 376 DIGDEQSIEQSLSTFSAHMKNIVHIVNNITFNSLVLFDELGAGTDPTEGAALAIAILRIF 435
Query: 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKILWGVPGRSSAINIAE 624
S+ TIATTH+ +LK + + +N +EFD L PTYK+ G+PG+S+A I+
Sbjct: 436 LYK-SIRTIATTHYSQLKIFALTEKYVKNGSVEFDVNTLSPTYKLRIGIPGKSNAFEISR 494
Query: 625 RLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLE 663
RLGL ++ NA+++ + +V+ ++E K Q E
Sbjct: 495 RLGLDDDIINNAKEILSQEDKDFEDVLSDIESKKKQIDE 533
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 71/306 (23%), Positives = 144/306 (47%), Gaps = 23/306 (7%)
Query: 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRL-LDETNAAIEM-QKH 109
++L LE++++ + + ++ LG+ + +L + + +D +R LDET A+ M K
Sbjct: 4 KTLNTLEYNEIKNKIEKLCKSKLGK-SIANKLEPMIE--EDEIRQSLDETYEAMSMIYKF 60
Query: 110 GSCSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADL 169
+ + ++ VK++I V + + P L + +L ++ R A + D +
Sbjct: 61 SNPPI----YEIINVKASIMHVSKGGYIVPEVLLKIGQILNSVHDIK---RYAGESDENY 113
Query: 170 YIRFMPLTQMIMQLFVNR-SLIKSIMQVVDEDGSIKDSASPALKQSRGQVQMLERKLYQL 228
P+ +M V L+ +I + + I D+AS L + R Q +K +
Sbjct: 114 --ENCPMIMAMMDSLVEEPDLVATINNAIISEDEISDNASRNLARIR---QTKRQKTENI 168
Query: 229 MDML--IRNENNESLFLEVSSIHG-RLCIRTG-ADQLSFKGLLLS-SSSGIGSVIEPLSA 283
D + I + N+++L + ++ R I + + SFKG++ SSSG IEP+
Sbjct: 169 RDKINSILSSNDQALQENIVTMRDDRYVIPVKVSHKSSFKGIVHDHSSSGQTVYIEPMEV 228
Query: 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFG 343
V LN+EL+ A + +L +++++ D I + + +LD + A+A Y++
Sbjct: 229 VELNNELRMLEAEEREEIIRILKEISDRVYDVKDSIFVDQDVLSKLDFIFAKAKYAIEID 288
Query: 344 GTSPNI 349
T+P +
Sbjct: 289 ATNPKL 294
>gi|421235605|ref|ZP_15692206.1| mutS2 protein [Streptococcus pneumoniae 2071004]
gi|395604524|gb|EJG64656.1| mutS2 protein [Streptococcus pneumoniae 2071004]
Length = 778
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 137/389 (35%), Positives = 215/389 (55%), Gaps = 46/389 (11%)
Query: 435 QVSALELAHP-----VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL 489
++ L + HP V D++ + +VITGPNTGGKTI LKT+GL +MA+SGL IL
Sbjct: 296 EIQLLHVCHPLVKNAVANDVYFGQDLTAIVITGPNTGGKTIMLKTLGLTQVMAQSGLPIL 355
Query: 490 SSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTN 549
+ + ++V F+ +FADIGDEQS+ QSLSTFS H+ I +I+ + SL+LLDE+GAGT+
Sbjct: 356 ADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVNQHSLLLLDELGAGTD 415
Query: 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTYKI 609
P EG AL M++LE + T+ATTH+ ELK F +NA MEFD L+PTY+
Sbjct: 416 PQEGAALAMAILEDL-RLRQIKTMATTHYPELKAYGIETAFVQNASMEFDTATLRPTYRF 474
Query: 610 LWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEAR 669
+ GVPGRS+A IA+RLGL ++V +A Q + ++N +I ++E E E+R
Sbjct: 475 MQGVPGRSNAFEIAKRLGLSEVIVGDASQQIDQDN-DVNRIIEQLE-------EQTLESR 526
Query: 670 HFLMLSRNLHKNLLRTRR---KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSA 726
L R + + L+ R K+ ++ ++ K + AA + + Q+ +
Sbjct: 527 KRLDNIREVEQENLKMNRALKKLYNELNREKETELNKAREQAAEIVDMALSESDQILKN- 585
Query: 727 SQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQTTVDKVEHPATASSSVVKDI 786
+H ++ QL+P H K + ++ +KV+ + + V++
Sbjct: 586 ------LHSKS-QLKP------HEIIEAK------AKLKKLAPEKVD---LSKNKVLQ-- 621
Query: 787 KQSPRVKRTELPNVGDLVHVSSFGKKGTV 815
+ K+ P VGD + V S+G++GT+
Sbjct: 622 ----KAKKKRAPKVGDDIVVLSYGQRGTL 646
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,611,986,734
Number of Sequences: 23463169
Number of extensions: 450884845
Number of successful extensions: 1497993
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8610
Number of HSP's successfully gapped in prelim test: 1596
Number of HSP's that attempted gapping in prelim test: 1468034
Number of HSP's gapped (non-prelim): 15906
length of query: 844
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 693
effective length of database: 8,816,256,848
effective search space: 6109665995664
effective search space used: 6109665995664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)