Query 003142
Match_columns 844
No_of_seqs 558 out of 3023
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 17:49:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00409 recombination and DNA 100.0 2E-102 5E-107 936.6 73.7 676 49-842 1-680 (782)
2 TIGR01069 mutS2 MutS2 family p 100.0 1E-101 3E-106 927.2 73.5 664 49-843 1-669 (771)
3 COG1193 Mismatch repair ATPase 100.0 7.9E-87 1.7E-91 787.3 50.0 652 52-843 2-657 (753)
4 TIGR01070 mutS1 DNA mismatch r 100.0 2E-65 4.3E-70 619.8 48.2 507 47-642 249-780 (840)
5 PRK05399 DNA mismatch repair p 100.0 1.3E-62 2.8E-67 598.1 43.3 505 47-642 263-795 (854)
6 COG0249 MutS Mismatch repair A 100.0 8.9E-52 1.9E-56 496.6 41.1 512 47-642 260-795 (843)
7 KOG0218 Mismatch repair MSH3 [ 100.0 6.2E-44 1.3E-48 401.0 33.4 518 47-640 458-1024(1070)
8 KOG0217 Mismatch repair ATPase 100.0 7.1E-39 1.5E-43 373.6 35.5 522 49-644 540-1090(1125)
9 KOG0219 Mismatch repair ATPase 100.0 3.9E-38 8.4E-43 361.1 32.7 530 18-641 274-832 (902)
10 PF00488 MutS_V: MutS domain V 100.0 8.7E-39 1.9E-43 336.9 19.0 200 441-642 28-231 (235)
11 cd03286 ABC_MSH6_euk MutS6 hom 100.0 2.2E-37 4.9E-42 322.4 16.5 193 442-636 16-218 (218)
12 cd03285 ABC_MSH2_euk MutS2 hom 100.0 7.9E-37 1.7E-41 319.7 19.5 198 442-641 16-219 (222)
13 KOG0221 Mismatch repair ATPase 100.0 8.7E-35 1.9E-39 323.7 35.3 536 10-640 220-790 (849)
14 KOG0220 Mismatch repair ATPase 100.0 3.8E-35 8.2E-40 332.0 32.6 511 51-646 266-814 (867)
15 cd03287 ABC_MSH3_euk MutS3 hom 100.0 8.1E-37 1.7E-41 319.1 16.9 193 442-636 17-222 (222)
16 cd03284 ABC_MutS1 MutS1 homolo 100.0 4.4E-36 9.5E-41 312.8 18.4 197 442-640 17-216 (216)
17 cd03280 ABC_MutS2 MutS2 homolo 100.0 1E-35 2.2E-40 306.2 17.7 186 442-628 15-200 (200)
18 cd03281 ABC_MSH5_euk MutS5 hom 100.0 9.5E-35 2.1E-39 302.2 16.7 186 442-628 15-213 (213)
19 cd03282 ABC_MSH4_euk MutS4 hom 100.0 4.7E-34 1E-38 295.0 18.0 185 442-628 15-204 (204)
20 cd03243 ABC_MutS_homologs The 100.0 4.2E-33 9E-38 287.2 16.5 184 442-628 17-202 (202)
21 smart00534 MUTSac ATPase domai 100.0 6.2E-33 1.3E-37 282.4 16.2 181 457-639 1-184 (185)
22 smart00533 MUTSd DNA-binding d 100.0 6E-32 1.3E-36 294.2 22.3 292 62-388 4-306 (308)
23 cd03283 ABC_MutS-like MutS-lik 100.0 2.3E-31 5E-36 274.1 17.8 183 442-628 13-199 (199)
24 COG1120 FepC ABC-type cobalami 99.9 2.6E-22 5.6E-27 212.4 13.7 159 440-600 12-221 (258)
25 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 4.7E-22 1E-26 209.6 12.7 153 444-599 18-219 (254)
26 PRK10636 putative ABC transpor 99.9 7.4E-21 1.6E-25 227.5 20.6 251 441-700 323-628 (638)
27 COG1126 GlnQ ABC-type polar am 99.9 2.5E-21 5.4E-26 197.1 12.4 157 441-600 13-218 (240)
28 COG1131 CcmA ABC-type multidru 99.9 2.9E-21 6.3E-26 210.4 13.7 156 442-600 17-219 (293)
29 COG1127 Ttg2A ABC-type transpo 99.8 4.9E-21 1.1E-25 197.6 13.4 158 441-600 19-228 (263)
30 COG4152 ABC-type uncharacteriz 99.8 7.5E-21 1.6E-25 196.0 11.7 156 441-600 13-212 (300)
31 PRK11147 ABC transporter ATPas 99.8 1.1E-19 2.3E-24 217.7 22.6 249 441-697 330-629 (635)
32 COG1116 TauB ABC-type nitrate/ 99.8 1.4E-20 3.1E-25 196.2 11.4 150 442-593 15-206 (248)
33 cd03214 ABC_Iron-Siderophores_ 99.8 3.7E-20 8E-25 187.5 14.0 153 442-597 11-177 (180)
34 COG4555 NatA ABC-type Na+ tran 99.8 3.4E-20 7.4E-25 186.5 12.8 153 445-600 17-215 (245)
35 COG1136 SalX ABC-type antimicr 99.8 3E-20 6.5E-25 193.3 12.8 150 443-596 18-220 (226)
36 TIGR01188 drrA daunorubicin re 99.8 4.7E-20 1E-24 201.7 14.1 156 442-600 5-206 (302)
37 PRK13537 nodulation ABC transp 99.8 4.9E-20 1.1E-24 202.1 13.9 157 441-600 18-220 (306)
38 cd03259 ABC_Carb_Solutes_like 99.8 7.5E-20 1.6E-24 189.6 13.9 154 442-598 12-211 (213)
39 PRK13536 nodulation factor exp 99.8 6.2E-20 1.3E-24 203.9 14.1 158 441-600 52-254 (340)
40 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 7.8E-20 1.7E-24 190.0 13.0 150 443-595 17-217 (218)
41 COG3638 ABC-type phosphate/pho 99.8 1.6E-19 3.4E-24 186.1 14.2 161 440-601 14-231 (258)
42 cd03261 ABC_Org_Solvent_Resist 99.8 2E-19 4.3E-24 189.4 15.2 156 442-600 12-219 (235)
43 cd03226 ABC_cobalt_CbiO_domain 99.8 1E-19 2.2E-24 187.7 12.6 151 443-596 13-204 (205)
44 cd03265 ABC_DrrA DrrA is the A 99.8 1.5E-19 3.2E-24 188.5 13.9 155 442-599 12-213 (220)
45 cd03293 ABC_NrtD_SsuB_transpor 99.8 1.4E-19 2.9E-24 188.8 13.6 153 443-598 17-214 (220)
46 PRK11247 ssuB aliphatic sulfon 99.8 2E-19 4.3E-24 192.6 14.6 157 441-600 23-216 (257)
47 COG1125 OpuBA ABC-type proline 99.8 1.2E-19 2.6E-24 188.2 12.5 156 441-597 12-215 (309)
48 TIGR00960 3a0501s02 Type II (G 99.8 1.4E-19 3.1E-24 188.0 13.2 150 443-595 16-215 (216)
49 TIGR01288 nodI ATP-binding ABC 99.8 1.4E-19 3.1E-24 198.0 13.6 156 442-600 16-217 (303)
50 cd03227 ABC_Class2 ABC-type Cl 99.8 1.3E-19 2.8E-24 180.7 12.1 131 444-591 11-153 (162)
51 TIGR02211 LolD_lipo_ex lipopro 99.8 1.7E-19 3.6E-24 187.9 13.2 152 443-596 18-219 (221)
52 cd03301 ABC_MalK_N The N-termi 99.8 2.3E-19 5E-24 185.8 14.0 154 442-598 12-211 (213)
53 cd03268 ABC_BcrA_bacitracin_re 99.8 2.7E-19 5.8E-24 184.8 14.4 154 442-598 12-206 (208)
54 cd03216 ABC_Carb_Monos_I This 99.8 1.7E-19 3.8E-24 180.0 12.4 147 442-598 12-162 (163)
55 cd03225 ABC_cobalt_CbiO_domain 99.8 1.6E-19 3.4E-24 186.8 12.4 149 443-594 14-210 (211)
56 cd03269 ABC_putative_ATPase Th 99.8 3.3E-19 7.1E-24 184.4 14.5 154 442-598 12-208 (210)
57 TIGR02315 ABC_phnC phosphonate 99.8 3.2E-19 6.9E-24 188.5 13.8 154 442-598 14-226 (243)
58 cd03256 ABC_PhnC_transporter A 99.8 3.5E-19 7.5E-24 187.8 14.0 154 443-599 14-226 (241)
59 cd03218 ABC_YhbG The ABC trans 99.8 3.1E-19 6.6E-24 187.3 13.5 155 442-599 12-214 (232)
60 TIGR02673 FtsE cell division A 99.8 2.7E-19 5.9E-24 185.5 12.8 150 442-594 14-213 (214)
61 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 4.1E-19 8.8E-24 187.2 14.1 155 442-599 13-213 (236)
62 cd03219 ABC_Mj1267_LivG_branch 99.8 4.3E-19 9.3E-24 186.7 14.2 155 442-599 12-224 (236)
63 cd03296 ABC_CysA_sulfate_impor 99.8 3.1E-19 6.7E-24 188.5 13.0 155 442-599 14-218 (239)
64 cd03292 ABC_FtsE_transporter F 99.8 4.4E-19 9.6E-24 183.7 13.9 150 443-595 14-213 (214)
65 cd03258 ABC_MetN_methionine_tr 99.8 3.6E-19 7.9E-24 187.0 13.4 153 444-599 19-222 (233)
66 PRK11629 lolD lipoprotein tran 99.8 4.6E-19 9.9E-24 186.5 14.1 153 443-598 22-225 (233)
67 cd03232 ABC_PDR_domain2 The pl 99.8 2.8E-19 6.1E-24 183.0 12.1 154 443-598 20-190 (192)
68 cd03238 ABC_UvrA The excision 99.8 1.3E-19 2.8E-24 183.4 9.4 148 442-596 7-166 (176)
69 cd03246 ABCC_Protease_Secretio 99.8 1.7E-19 3.6E-24 181.6 10.0 146 443-595 15-172 (173)
70 TIGR03522 GldA_ABC_ATP gliding 99.8 4E-19 8.6E-24 194.4 13.7 156 441-600 13-214 (301)
71 PRK11248 tauB taurine transpor 99.8 6.2E-19 1.3E-23 188.4 14.7 155 442-599 13-212 (255)
72 cd03266 ABC_NatA_sodium_export 99.8 6E-19 1.3E-23 183.4 14.1 152 444-598 19-216 (218)
73 PRK10584 putative ABC transpor 99.8 4.8E-19 1E-23 185.5 13.4 151 444-597 24-225 (228)
74 cd03294 ABC_Pro_Gly_Bertaine T 99.8 5.7E-19 1.2E-23 190.1 14.1 156 441-599 35-242 (269)
75 cd03235 ABC_Metallic_Cations A 99.8 3.9E-19 8.5E-24 184.3 12.4 153 442-596 11-210 (213)
76 TIGR03740 galliderm_ABC gallid 99.8 8.7E-19 1.9E-23 183.1 15.1 156 442-600 12-206 (223)
77 cd03267 ABC_NatA_like Similar 99.8 8.2E-19 1.8E-23 185.2 14.9 155 441-598 32-234 (236)
78 cd03262 ABC_HisP_GlnQ_permease 99.8 4.8E-19 1E-23 183.3 12.5 151 442-595 12-212 (213)
79 PRK11300 livG leucine/isoleuci 99.8 8.5E-19 1.8E-23 186.7 14.7 156 442-599 17-235 (255)
80 PRK13647 cbiO cobalt transport 99.8 7.9E-19 1.7E-23 189.5 14.5 156 442-600 17-220 (274)
81 PRK11264 putative amino-acid A 99.8 8.4E-19 1.8E-23 186.2 14.4 155 442-599 15-225 (250)
82 COG1122 CbiO ABC-type cobalt t 99.8 3E-19 6.4E-24 188.3 10.8 156 443-601 17-222 (235)
83 PRK11153 metN DL-methionine tr 99.8 7.3E-19 1.6E-23 195.7 14.5 155 443-599 18-222 (343)
84 PRK13644 cbiO cobalt transport 99.8 9E-19 2E-23 189.1 14.7 156 442-600 14-217 (274)
85 PRK13635 cbiO cobalt transport 99.8 8.6E-19 1.9E-23 189.7 14.5 155 443-600 20-222 (279)
86 PRK13637 cbiO cobalt transport 99.8 8.2E-19 1.8E-23 190.7 14.2 156 443-600 20-227 (287)
87 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 8.2E-19 1.8E-23 183.9 13.7 155 441-598 33-222 (224)
88 PRK13650 cbiO cobalt transport 99.8 9.2E-19 2E-23 189.5 14.5 155 443-600 20-222 (279)
89 cd03224 ABC_TM1139_LivF_branch 99.8 9.2E-19 2E-23 182.4 13.9 155 442-599 12-213 (222)
90 TIGR02314 ABC_MetN D-methionin 99.8 8.3E-19 1.8E-23 194.9 14.3 155 443-599 18-222 (343)
91 PRK11650 ugpC glycerol-3-phosp 99.8 8.9E-19 1.9E-23 195.8 14.5 157 442-600 16-217 (356)
92 PRK09536 btuD corrinoid ABC tr 99.8 7.6E-19 1.7E-23 198.8 14.1 157 441-600 14-221 (402)
93 COG0411 LivG ABC-type branched 99.8 5E-19 1.1E-23 183.6 11.4 157 441-600 15-232 (250)
94 cd03217 ABC_FeS_Assembly ABC-t 99.8 6.6E-19 1.4E-23 181.4 12.2 157 442-600 12-187 (200)
95 PRK11831 putative ABC transpor 99.8 1.1E-18 2.3E-23 187.9 14.3 156 441-599 18-225 (269)
96 cd03264 ABC_drug_resistance_li 99.8 1E-18 2.2E-23 180.9 13.5 152 442-598 12-209 (211)
97 PRK13638 cbiO cobalt transport 99.8 8.1E-19 1.8E-23 189.0 13.2 156 442-600 13-218 (271)
98 PRK10895 lipopolysaccharide AB 99.8 1.2E-18 2.6E-23 184.2 14.1 155 442-599 15-218 (241)
99 TIGR01186 proV glycine betaine 99.8 1.1E-18 2.4E-23 195.1 14.6 156 441-598 4-210 (363)
100 PRK10908 cell division protein 99.8 1E-18 2.2E-23 182.4 13.4 153 442-597 14-216 (222)
101 cd03263 ABC_subfamily_A The AB 99.8 1.1E-18 2.3E-23 181.7 13.5 153 443-599 15-213 (220)
102 PRK09493 glnQ glutamine ABC tr 99.8 1.2E-18 2.7E-23 183.9 14.1 155 442-599 13-217 (240)
103 COG1137 YhbG ABC-type (unclass 99.8 5.7E-19 1.2E-23 177.6 10.8 157 441-600 15-221 (243)
104 cd03229 ABC_Class3 This class 99.8 4.8E-19 1E-23 179.0 10.4 149 442-594 12-177 (178)
105 cd03298 ABC_ThiQ_thiamine_tran 99.8 1.1E-18 2.4E-23 180.6 13.3 148 448-598 16-209 (211)
106 TIGR01184 ntrCD nitrate transp 99.8 9.6E-19 2.1E-23 184.0 12.9 151 447-600 2-197 (230)
107 PRK11000 maltose/maltodextrin 99.8 1.1E-18 2.3E-23 196.1 14.0 155 442-599 15-215 (369)
108 PRK13641 cbiO cobalt transport 99.8 1.1E-18 2.4E-23 189.6 13.6 156 443-600 20-227 (287)
109 TIGR03410 urea_trans_UrtE urea 99.8 1.2E-18 2.6E-23 182.7 13.4 156 442-599 12-213 (230)
110 PRK13651 cobalt transporter AT 99.8 1.6E-18 3.4E-23 190.1 14.7 154 444-600 21-247 (305)
111 PRK11124 artP arginine transpo 99.8 1.8E-18 3.8E-23 183.0 14.6 156 442-600 14-223 (242)
112 PRK11614 livF leucine/isoleuci 99.8 1.2E-18 2.7E-23 183.6 13.4 155 442-599 17-218 (237)
113 cd03230 ABC_DR_subfamily_A Thi 99.8 6.3E-19 1.4E-23 177.4 10.6 145 443-595 13-172 (173)
114 cd03223 ABCD_peroxisomal_ALDP 99.8 4.9E-19 1.1E-23 177.2 9.8 144 443-593 14-162 (166)
115 cd03213 ABCG_EPDR ABCG transpo 99.8 9.2E-19 2E-23 179.6 11.8 154 443-598 22-192 (194)
116 cd03260 ABC_PstB_phosphate_tra 99.8 1.8E-18 3.9E-23 181.0 14.3 155 442-599 12-221 (227)
117 PRK13548 hmuV hemin importer A 99.8 1.4E-18 2.9E-23 186.0 13.5 155 442-599 14-222 (258)
118 COG1118 CysA ABC-type sulfate/ 99.8 8.1E-19 1.7E-23 186.6 11.0 155 442-599 14-219 (345)
119 cd03295 ABC_OpuCA_Osmoprotecti 99.8 2.4E-18 5.2E-23 182.1 14.6 154 443-599 14-217 (242)
120 cd03297 ABC_ModC_molybdenum_tr 99.8 1.6E-18 3.4E-23 180.0 13.0 147 448-598 16-212 (214)
121 PRK13640 cbiO cobalt transport 99.8 1.7E-18 3.7E-23 187.7 13.8 156 443-600 20-225 (282)
122 PRK13634 cbiO cobalt transport 99.8 1.6E-18 3.6E-23 188.6 13.7 156 443-600 20-228 (290)
123 TIGR03005 ectoine_ehuA ectoine 99.8 2.4E-18 5.3E-23 183.1 14.7 155 442-599 12-228 (252)
124 PRK09984 phosphonate/organopho 99.8 2E-18 4.4E-23 184.8 14.1 156 442-599 16-234 (262)
125 cd03257 ABC_NikE_OppD_transpor 99.8 1.6E-18 3.4E-23 181.2 12.9 152 444-598 19-226 (228)
126 TIGR03411 urea_trans_UrtD urea 99.8 2.5E-18 5.5E-23 181.6 14.5 154 442-599 14-223 (242)
127 TIGR03265 PhnT2 putative 2-ami 99.8 1.9E-18 4.2E-23 192.9 14.2 156 442-600 16-217 (353)
128 PRK11231 fecE iron-dicitrate t 99.8 2.4E-18 5.2E-23 183.6 14.2 155 442-599 14-219 (255)
129 TIGR03258 PhnT 2-aminoethylpho 99.8 2E-18 4.2E-23 193.3 14.0 157 442-600 17-221 (362)
130 TIGR03608 L_ocin_972_ABC putat 99.8 1.5E-18 3.1E-23 178.8 12.0 144 442-588 10-203 (206)
131 cd03215 ABC_Carb_Monos_II This 99.8 9.9E-19 2.1E-23 177.4 10.6 147 445-595 15-181 (182)
132 PRK10851 sulfate/thiosulfate t 99.8 1.6E-18 3.5E-23 193.5 13.3 156 442-600 14-219 (353)
133 PRK13632 cbiO cobalt transport 99.8 2.5E-18 5.4E-23 185.3 14.2 155 442-599 21-223 (271)
134 PRK11432 fbpC ferric transport 99.8 2.2E-18 4.7E-23 192.3 14.2 157 441-600 17-219 (351)
135 PRK13636 cbiO cobalt transport 99.8 2.3E-18 5.1E-23 186.7 14.0 157 442-600 18-224 (283)
136 COG2884 FtsE Predicted ATPase 99.8 3E-18 6.5E-23 171.3 13.5 157 441-600 13-219 (223)
137 COG3842 PotA ABC-type spermidi 99.8 9.7E-19 2.1E-23 192.8 11.1 156 441-598 16-217 (352)
138 PRK13652 cbiO cobalt transport 99.8 2.7E-18 5.9E-23 185.6 14.3 155 443-600 17-220 (277)
139 PRK09544 znuC high-affinity zi 99.8 3.2E-18 7E-23 182.6 14.5 152 442-597 16-199 (251)
140 PRK09452 potA putrescine/sperm 99.8 2.7E-18 5.9E-23 193.0 14.6 156 442-599 26-226 (375)
141 PRK13633 cobalt transporter AT 99.8 2.7E-18 5.8E-23 185.9 14.0 155 443-600 23-226 (280)
142 PRK10575 iron-hydroxamate tran 99.8 2.8E-18 6E-23 184.2 13.9 155 442-599 23-229 (265)
143 TIGR01978 sufC FeS assembly AT 99.8 2.9E-18 6.2E-23 181.1 13.7 157 442-600 12-227 (243)
144 PRK14250 phosphate ABC transpo 99.8 3.3E-18 7.1E-23 181.1 14.2 154 442-599 15-213 (241)
145 TIGR01277 thiQ thiamine ABC tr 99.8 3.4E-18 7.3E-23 177.5 14.0 151 446-599 14-210 (213)
146 PRK10070 glycine betaine trans 99.8 2.4E-18 5.3E-23 194.6 14.0 156 441-599 39-246 (400)
147 PRK13648 cbiO cobalt transport 99.8 2.9E-18 6.3E-23 184.5 13.9 155 443-600 22-224 (269)
148 COG4586 ABC-type uncharacteriz 99.8 2.7E-18 5.8E-23 179.8 13.0 155 445-600 39-239 (325)
149 COG4604 CeuD ABC-type enteroch 99.8 2.1E-18 4.6E-23 173.1 11.7 158 440-599 11-217 (252)
150 PRK13546 teichoic acids export 99.8 2.7E-18 6E-23 184.5 13.6 155 441-598 35-223 (264)
151 TIGR02769 nickel_nikE nickel i 99.8 2.8E-18 6.2E-23 184.2 13.7 156 442-599 23-232 (265)
152 TIGR03873 F420-0_ABC_ATP propo 99.8 2.5E-18 5.5E-23 183.5 13.2 156 442-600 13-219 (256)
153 PRK10253 iron-enterobactin tra 99.8 3.8E-18 8.3E-23 183.2 14.5 155 442-599 19-225 (265)
154 COG0488 Uup ATPase components 99.8 1.1E-17 2.3E-22 194.6 19.1 148 441-595 14-227 (530)
155 cd03247 ABCC_cytochrome_bd The 99.8 1.9E-18 4E-23 174.7 11.3 148 444-598 16-176 (178)
156 PRK13643 cbiO cobalt transport 99.8 2.7E-18 5.8E-23 186.7 13.3 155 443-600 19-226 (288)
157 PRK13646 cbiO cobalt transport 99.8 3.2E-18 6.9E-23 185.9 13.9 155 443-600 20-228 (286)
158 TIGR02770 nickel_nikD nickel i 99.8 3.1E-18 6.7E-23 179.9 13.4 152 446-599 2-207 (230)
159 TIGR02982 heterocyst_DevA ABC 99.8 4.2E-18 9.1E-23 177.7 14.2 151 443-596 18-219 (220)
160 PRK10619 histidine/lysine/argi 99.8 4E-18 8.6E-23 182.1 14.3 155 442-599 17-233 (257)
161 cd03245 ABCC_bacteriocin_expor 99.8 2.6E-18 5.6E-23 178.9 12.4 152 443-598 17-218 (220)
162 PRK13645 cbiO cobalt transport 99.8 3.2E-18 6.9E-23 186.1 13.6 153 444-599 25-232 (289)
163 cd03228 ABCC_MRP_Like The MRP 99.8 1.5E-18 3.2E-23 174.3 10.0 143 444-594 16-170 (171)
164 PRK13649 cbiO cobalt transport 99.8 3.4E-18 7.4E-23 184.9 13.5 154 443-599 20-226 (280)
165 PRK15112 antimicrobial peptide 99.8 4E-18 8.6E-23 183.3 13.9 154 443-599 26-231 (267)
166 PRK10938 putative molybdenum t 99.8 2.7E-18 5.9E-23 199.6 13.5 155 442-599 15-216 (490)
167 PRK11607 potG putrescine trans 99.8 4E-18 8.6E-23 191.9 14.2 157 442-600 31-232 (377)
168 TIGR03415 ABC_choXWV_ATP choli 99.8 4.5E-18 9.7E-23 191.3 14.6 156 441-599 35-246 (382)
169 PRK11701 phnK phosphonate C-P 99.8 4.6E-18 1E-22 181.7 13.9 156 442-599 18-233 (258)
170 PRK10418 nikD nickel transport 99.8 4.8E-18 1E-22 181.3 14.0 155 443-599 16-222 (254)
171 PRK15056 manganese/iron transp 99.8 4.7E-18 1E-22 183.2 14.1 155 442-599 19-222 (272)
172 PRK13639 cbiO cobalt transport 99.8 4.6E-18 1E-22 183.6 14.0 155 443-600 15-219 (275)
173 TIGR03269 met_CoM_red_A2 methy 99.8 3.9E-18 8.4E-23 199.8 14.5 155 442-598 12-249 (520)
174 COG3839 MalK ABC-type sugar tr 99.8 2.3E-18 5E-23 188.9 11.6 153 445-598 18-214 (338)
175 TIGR02323 CP_lyasePhnK phospho 99.8 5.2E-18 1.1E-22 180.5 13.9 156 442-599 15-230 (253)
176 cd03252 ABCC_Hemolysin The ABC 99.8 3.1E-18 6.8E-23 180.4 12.0 155 442-600 14-218 (237)
177 PRK15177 Vi polysaccharide exp 99.8 4.4E-18 9.5E-23 177.2 12.9 153 444-600 1-185 (213)
178 TIGR01166 cbiO cobalt transpor 99.8 3E-18 6.6E-23 174.7 11.4 137 442-581 4-189 (190)
179 PRK15439 autoinducer 2 ABC tra 99.8 4.3E-18 9.3E-23 199.0 14.1 156 441-599 22-221 (510)
180 TIGR00968 3a0106s01 sulfate AB 99.8 7.3E-18 1.6E-22 178.0 14.5 155 442-599 12-212 (237)
181 PRK14268 phosphate ABC transpo 99.8 8E-18 1.7E-22 179.9 14.8 155 442-599 24-234 (258)
182 TIGR02142 modC_ABC molybdenum 99.8 6.6E-18 1.4E-22 188.8 14.6 149 448-599 15-213 (354)
183 PRK03695 vitamin B12-transport 99.8 5.4E-18 1.2E-22 180.3 13.3 151 445-599 11-214 (248)
184 COG1117 PstB ABC-type phosphat 99.8 5.4E-18 1.2E-22 172.3 12.3 155 441-598 18-228 (253)
185 COG3840 ThiQ ABC-type thiamine 99.8 7.8E-18 1.7E-22 167.2 13.2 157 445-602 14-214 (231)
186 PRK10771 thiQ thiamine transpo 99.8 7.9E-18 1.7E-22 177.0 14.1 149 448-599 17-211 (232)
187 COG1119 ModF ABC-type molybden 99.8 2.6E-18 5.6E-23 178.4 10.1 163 436-598 37-253 (257)
188 PRK13549 xylose transporter AT 99.7 4.5E-18 9.7E-23 198.7 13.3 157 441-599 16-224 (506)
189 PRK10636 putative ABC transpor 99.7 2.5E-17 5.5E-22 197.2 19.9 151 441-597 12-225 (638)
190 TIGR00972 3a0107s01c2 phosphat 99.7 7.7E-18 1.7E-22 178.7 13.8 155 442-599 13-224 (247)
191 cd03300 ABC_PotA_N PotA is an 99.7 7.9E-18 1.7E-22 177.1 13.5 155 442-599 12-212 (232)
192 PRK10762 D-ribose transporter 99.7 5.6E-18 1.2E-22 197.6 13.7 155 442-599 16-222 (501)
193 cd03234 ABCG_White The White s 99.7 7E-18 1.5E-22 176.7 13.0 154 443-598 20-224 (226)
194 cd03233 ABC_PDR_domain1 The pl 99.7 6.1E-18 1.3E-22 174.5 12.4 156 442-598 19-200 (202)
195 PRK09700 D-allose transporter 99.7 7.6E-18 1.6E-22 196.9 14.4 155 442-599 17-226 (510)
196 PRK11022 dppD dipeptide transp 99.7 9.5E-18 2.1E-22 185.6 14.4 155 443-599 20-235 (326)
197 PRK10247 putative ABC transpor 99.7 7.3E-18 1.6E-22 176.7 12.8 148 442-592 19-211 (225)
198 PRK13545 tagH teichoic acids e 99.7 6.8E-18 1.5E-22 194.2 13.4 154 443-599 37-224 (549)
199 PRK14242 phosphate transporter 99.7 1.3E-17 2.7E-22 177.6 14.6 154 442-599 18-229 (253)
200 PRK13547 hmuV hemin importer A 99.7 8.3E-18 1.8E-22 181.5 13.3 156 442-599 13-236 (272)
201 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 6.4E-18 1.4E-22 165.5 11.2 128 443-594 13-143 (144)
202 COG1135 AbcC ABC-type metal io 99.7 8.2E-18 1.8E-22 179.3 12.8 154 443-600 19-224 (339)
203 PRK11144 modC molybdate transp 99.7 7.9E-18 1.7E-22 188.1 13.2 148 448-599 16-210 (352)
204 cd03250 ABCC_MRP_domain1 Domai 99.7 7.1E-18 1.5E-22 173.8 11.7 149 444-594 19-203 (204)
205 PRK15093 antimicrobial peptide 99.7 1.6E-17 3.4E-22 184.2 15.1 155 443-599 20-240 (330)
206 PRK09580 sufC cysteine desulfu 99.7 1.1E-17 2.3E-22 177.4 13.2 155 442-599 13-227 (248)
207 PRK13538 cytochrome c biogenes 99.7 8.5E-18 1.8E-22 173.5 12.1 141 442-585 13-195 (204)
208 cd03222 ABC_RNaseL_inhibitor T 99.7 3.5E-18 7.5E-23 173.2 9.0 133 442-594 12-148 (177)
209 PRK13642 cbiO cobalt transport 99.7 1.5E-17 3.2E-22 179.9 14.5 154 443-599 20-221 (277)
210 PRK14248 phosphate ABC transpo 99.7 1.8E-17 3.8E-22 178.3 14.9 155 442-600 33-245 (268)
211 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 8.5E-18 1.8E-22 177.2 12.2 153 443-599 16-218 (238)
212 PRK15079 oligopeptide ABC tran 99.7 1.4E-17 3E-22 184.5 14.5 154 443-599 34-243 (331)
213 PRK14245 phosphate ABC transpo 99.7 2.1E-17 4.5E-22 175.7 15.2 155 442-599 15-226 (250)
214 PRK14247 phosphate ABC transpo 99.7 1.3E-17 2.9E-22 177.1 13.7 155 442-599 15-226 (250)
215 PRK10419 nikE nickel transport 99.7 1.3E-17 2.8E-22 179.5 13.6 156 442-600 24-234 (268)
216 PRK13543 cytochrome c biogenes 99.7 1E-17 2.3E-22 174.2 12.4 147 442-591 23-210 (214)
217 cd03290 ABCC_SUR1_N The SUR do 99.7 1E-17 2.3E-22 174.4 12.4 150 443-594 14-217 (218)
218 cd03244 ABCC_MRP_domain2 Domai 99.7 8.5E-18 1.8E-22 175.1 11.6 152 443-599 17-218 (221)
219 COG4559 ABC-type hemin transpo 99.7 1.3E-17 2.7E-22 169.3 12.3 158 441-600 12-223 (259)
220 PRK13539 cytochrome c biogenes 99.7 1E-17 2.2E-22 173.4 12.0 146 442-591 14-198 (207)
221 cd03254 ABCC_Glucan_exporter_l 99.7 1.2E-17 2.6E-22 175.0 12.6 152 443-599 16-218 (229)
222 cd03253 ABCC_ATM1_transporter 99.7 1.3E-17 2.8E-22 175.5 12.8 152 443-599 14-216 (236)
223 COG1124 DppF ABC-type dipeptid 99.7 1.5E-17 3.3E-22 172.5 13.1 156 444-601 21-225 (252)
224 PRK13631 cbiO cobalt transport 99.7 1.5E-17 3.2E-22 183.6 13.7 155 443-600 39-258 (320)
225 CHL00131 ycf16 sulfate ABC tra 99.7 1E-17 2.2E-22 178.1 11.9 157 442-600 19-234 (252)
226 PRK14275 phosphate ABC transpo 99.7 2.4E-17 5.2E-22 179.2 15.0 155 442-600 51-263 (286)
227 PRK10744 pstB phosphate transp 99.7 1.4E-17 3E-22 178.3 12.8 156 442-600 25-237 (260)
228 PRK11308 dppF dipeptide transp 99.7 1.9E-17 4.1E-22 183.2 14.2 154 443-599 28-236 (327)
229 cd03248 ABCC_TAP TAP, the Tran 99.7 9.4E-18 2E-22 175.5 11.2 148 443-595 27-225 (226)
230 PRK14235 phosphate transporter 99.7 2.7E-17 5.8E-22 176.9 14.9 156 441-599 30-243 (267)
231 cd03237 ABC_RNaseL_inhibitor_d 99.7 1.6E-17 3.4E-22 176.9 12.9 145 445-592 9-190 (246)
232 cd03251 ABCC_MsbA MsbA is an e 99.7 1.2E-17 2.7E-22 175.4 12.0 151 444-599 16-217 (234)
233 PRK14273 phosphate ABC transpo 99.7 2.1E-17 4.6E-22 176.1 13.7 156 442-600 19-231 (254)
234 cd03299 ABC_ModC_like Archeal 99.7 2.5E-17 5.5E-22 173.7 14.1 152 445-599 14-211 (235)
235 PRK10982 galactose/methyl gala 99.7 2.2E-17 4.7E-22 192.2 14.5 155 442-599 10-215 (491)
236 PRK14244 phosphate ABC transpo 99.7 2.3E-17 4.9E-22 175.6 13.4 154 442-599 17-229 (251)
237 COG4619 ABC-type uncharacteriz 99.7 2.4E-17 5.3E-22 161.7 12.3 159 438-597 11-213 (223)
238 TIGR02633 xylG D-xylose ABC tr 99.7 1.6E-17 3.4E-22 193.8 13.1 156 442-599 13-222 (500)
239 PRK14269 phosphate ABC transpo 99.7 2E-17 4.2E-22 175.6 12.6 155 442-599 14-222 (246)
240 PRK14267 phosphate ABC transpo 99.7 3E-17 6.6E-22 174.7 14.0 155 442-599 16-229 (253)
241 PRK14274 phosphate ABC transpo 99.7 4.3E-17 9.3E-22 174.3 15.1 156 442-600 24-236 (259)
242 PRK13549 xylose transporter AT 99.7 1.6E-17 3.4E-22 194.1 12.7 157 442-600 274-487 (506)
243 PRK14239 phosphate transporter 99.7 4.2E-17 9E-22 173.4 14.8 156 442-600 17-229 (252)
244 PRK09473 oppD oligopeptide tra 99.7 2.9E-17 6.3E-22 182.0 13.8 155 443-599 29-243 (330)
245 PRK13540 cytochrome c biogenes 99.7 2.1E-17 4.6E-22 170.0 11.6 142 442-586 13-194 (200)
246 PRK10938 putative molybdenum t 99.7 1.5E-17 3.2E-22 193.6 11.7 158 442-600 272-485 (490)
247 TIGR02633 xylG D-xylose ABC tr 99.7 1.7E-17 3.7E-22 193.5 12.2 156 443-600 273-485 (500)
248 PRK14237 phosphate transporter 99.7 5E-17 1.1E-21 174.8 14.9 155 442-600 32-244 (267)
249 TIGR03269 met_CoM_red_A2 methy 99.7 3.1E-17 6.6E-22 192.3 14.3 154 443-599 297-509 (520)
250 PRK15134 microcin C ABC transp 99.7 1.9E-17 4E-22 194.5 12.4 154 443-600 299-508 (529)
251 PRK14240 phosphate transporter 99.7 4.6E-17 1E-21 173.0 14.2 156 442-600 15-227 (250)
252 COG0410 LivF ABC-type branched 99.7 4.1E-17 8.8E-22 168.3 13.1 150 441-600 14-219 (237)
253 PRK14256 phosphate ABC transpo 99.7 4.7E-17 1E-21 173.2 14.2 155 442-599 16-228 (252)
254 PRK14251 phosphate ABC transpo 99.7 5.4E-17 1.2E-21 172.6 14.6 155 442-599 16-227 (251)
255 PRK14262 phosphate ABC transpo 99.7 5.3E-17 1.2E-21 172.5 14.5 156 442-600 15-227 (250)
256 cd03231 ABC_CcmA_heme_exporter 99.7 3E-17 6.6E-22 169.1 12.2 144 442-588 12-195 (201)
257 COG0488 Uup ATPase components 99.7 1.8E-16 3.9E-21 184.4 19.8 145 442-593 334-511 (530)
258 cd03291 ABCC_CFTR1 The CFTR su 99.7 3.2E-17 7E-22 177.8 12.7 155 442-599 49-239 (282)
259 PRK14270 phosphate ABC transpo 99.7 5.9E-17 1.3E-21 172.4 14.4 155 442-599 16-227 (251)
260 PRK14241 phosphate transporter 99.7 5.7E-17 1.2E-21 173.3 14.4 155 442-599 16-234 (258)
261 TIGR02324 CP_lyasePhnL phospho 99.7 3.8E-17 8.3E-22 170.7 12.5 146 443-591 21-222 (224)
262 PRK15064 ABC transporter ATP-b 99.7 3E-17 6.4E-22 192.8 13.1 151 441-597 12-231 (530)
263 PRK11288 araG L-arabinose tran 99.7 2.9E-17 6.3E-22 191.6 12.9 154 442-598 16-220 (501)
264 TIGR01189 ccmA heme ABC export 99.7 3.7E-17 8.1E-22 167.8 12.2 136 442-580 12-188 (198)
265 PRK11288 araG L-arabinose tran 99.7 2.2E-17 4.8E-22 192.7 11.8 154 444-600 267-478 (501)
266 PRK09700 D-allose transporter 99.7 4E-17 8.7E-22 190.8 13.9 152 445-598 278-489 (510)
267 PRK15439 autoinducer 2 ABC tra 99.7 2.6E-17 5.6E-22 192.5 12.1 153 445-599 278-484 (510)
268 cd03369 ABCC_NFT1 Domain 2 of 99.7 1.8E-17 3.9E-22 171.3 9.5 150 443-598 21-203 (207)
269 PRK14255 phosphate ABC transpo 99.7 6.9E-17 1.5E-21 171.9 14.2 154 442-599 17-228 (252)
270 PRK15134 microcin C ABC transp 99.7 4.2E-17 9.1E-22 191.5 13.8 155 443-599 22-238 (529)
271 PRK14261 phosphate ABC transpo 99.7 8.7E-17 1.9E-21 171.3 14.9 154 442-599 18-229 (253)
272 TIGR03771 anch_rpt_ABC anchore 99.7 4.1E-17 8.9E-22 170.9 11.8 144 453-599 4-193 (223)
273 cd00267 ABC_ATPase ABC (ATP-bi 99.7 4.5E-17 9.7E-22 161.1 11.4 140 443-594 12-156 (157)
274 PRK11147 ABC transporter ATPas 99.7 2.9E-16 6.4E-21 188.2 20.7 149 441-597 14-232 (635)
275 PRK14253 phosphate ABC transpo 99.7 9E-17 1.9E-21 170.7 14.4 154 442-599 15-225 (249)
276 PRK14272 phosphate ABC transpo 99.7 7.7E-17 1.7E-21 171.4 13.9 156 442-600 16-229 (252)
277 PRK13541 cytochrome c biogenes 99.7 5.8E-17 1.3E-21 166.1 12.3 141 443-587 14-191 (195)
278 PRK14246 phosphate ABC transpo 99.7 8.6E-17 1.9E-21 172.2 13.9 156 441-599 21-233 (257)
279 cd03289 ABCC_CFTR2 The CFTR su 99.7 8.1E-17 1.7E-21 174.1 13.6 152 442-599 16-217 (275)
280 PRK14254 phosphate ABC transpo 99.7 6.5E-17 1.4E-21 175.7 12.9 154 442-599 51-261 (285)
281 PRK14259 phosphate ABC transpo 99.7 7.6E-17 1.6E-21 173.6 13.3 148 442-593 25-228 (269)
282 PRK10261 glutathione transport 99.7 6.8E-17 1.5E-21 193.2 14.2 155 443-599 337-545 (623)
283 PRK14249 phosphate ABC transpo 99.7 9.9E-17 2.1E-21 170.7 13.9 154 442-599 16-227 (251)
284 PRK14265 phosphate ABC transpo 99.7 6.4E-17 1.4E-21 174.7 12.6 147 442-592 32-234 (274)
285 PRK14258 phosphate ABC transpo 99.7 1.2E-16 2.5E-21 171.4 14.3 155 442-599 19-237 (261)
286 COG1134 TagH ABC-type polysacc 99.7 6.4E-17 1.4E-21 168.2 11.7 157 442-601 39-230 (249)
287 PRK14238 phosphate transporter 99.7 1.3E-16 2.9E-21 171.9 14.7 155 442-599 36-247 (271)
288 PRK10982 galactose/methyl gala 99.7 4.7E-17 1E-21 189.4 11.9 154 443-598 261-471 (491)
289 PRK10261 glutathione transport 99.7 6.4E-17 1.4E-21 193.4 13.3 155 443-599 29-250 (623)
290 PRK15064 ABC transporter ATP-b 99.7 4.8E-17 1.1E-21 191.0 12.0 150 442-597 331-514 (530)
291 PRK10762 D-ribose transporter 99.7 5.8E-17 1.3E-21 189.1 12.5 154 445-600 267-477 (501)
292 PRK14271 phosphate ABC transpo 99.7 1.5E-16 3.3E-21 172.0 14.2 156 441-599 32-243 (276)
293 PRK14236 phosphate transporter 99.7 1.6E-16 3.5E-21 171.4 14.3 154 442-599 37-248 (272)
294 COG4133 CcmA ABC-type transpor 99.7 1E-16 2.2E-21 160.4 11.4 137 440-579 12-190 (209)
295 PRK14263 phosphate ABC transpo 99.7 2.2E-16 4.7E-21 169.5 14.7 155 441-598 19-236 (261)
296 COG4598 HisP ABC-type histidin 99.7 1.2E-16 2.6E-21 158.3 11.4 157 441-599 17-233 (256)
297 PRK14264 phosphate ABC transpo 99.7 2.1E-16 4.5E-21 173.3 14.0 156 441-599 56-281 (305)
298 TIGR01257 rim_protein retinal- 99.7 1.3E-16 2.8E-21 206.7 14.2 155 443-600 1952-2152(2272)
299 PRK14266 phosphate ABC transpo 99.7 3.4E-16 7.3E-21 166.4 15.1 155 442-600 15-227 (250)
300 PLN03073 ABC transporter F fam 99.7 1.1E-16 2.4E-21 193.2 12.7 150 442-597 521-703 (718)
301 cd03288 ABCC_SUR2 The SUR doma 99.7 1.9E-16 4.2E-21 169.3 12.6 152 443-599 34-235 (257)
302 PRK14252 phosphate ABC transpo 99.7 3.9E-16 8.5E-21 167.6 14.9 154 442-599 28-241 (265)
303 PRK14260 phosphate ABC transpo 99.7 2E-16 4.4E-21 169.2 12.2 155 442-599 19-235 (259)
304 cd03270 ABC_UvrA_I The excisio 99.7 1.4E-16 3E-21 167.4 10.8 86 512-599 131-225 (226)
305 COG4181 Predicted ABC-type tra 99.7 1.6E-16 3.5E-21 156.4 10.4 156 442-598 22-226 (228)
306 PRK14243 phosphate transporter 99.7 3.3E-16 7.2E-21 168.2 13.7 147 442-592 22-224 (264)
307 cd03236 ABC_RNaseL_inhibitor_d 99.7 1.8E-16 4E-21 169.6 11.5 148 444-596 15-216 (255)
308 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.1E-16 2.5E-21 188.8 10.4 149 442-597 17-237 (552)
309 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.8E-16 4E-21 187.1 11.9 146 442-593 334-515 (552)
310 PRK13409 putative ATPase RIL; 99.7 3.6E-16 7.9E-21 185.4 14.3 150 445-598 354-533 (590)
311 COG4161 ArtP ABC-type arginine 99.7 5.8E-16 1.3E-20 151.0 12.9 161 440-603 12-226 (242)
312 PRK11819 putative ABC transpor 99.7 2.2E-16 4.8E-21 186.5 12.2 150 441-596 335-521 (556)
313 PRK11819 putative ABC transpor 99.7 1.8E-16 3.9E-21 187.3 11.0 149 442-597 19-239 (556)
314 COG0396 sufC Cysteine desulfur 99.7 2E-16 4.3E-21 162.8 9.8 156 443-600 17-227 (251)
315 PLN03073 ABC transporter F fam 99.7 2.2E-15 4.9E-20 182.0 20.5 80 513-597 339-420 (718)
316 PRK14257 phosphate ABC transpo 99.7 5.8E-16 1.3E-20 171.5 13.6 157 441-600 93-306 (329)
317 PLN03211 ABC transporter G-25; 99.7 3.6E-16 7.7E-21 187.6 12.4 158 441-600 79-289 (659)
318 TIGR01257 rim_protein retinal- 99.7 3.9E-16 8.4E-21 202.3 13.5 156 442-600 942-1142(2272)
319 COG4525 TauB ABC-type taurine 99.7 3.7E-16 7.9E-21 156.8 10.1 148 443-591 18-206 (259)
320 COG1123 ATPase components of v 99.6 6E-16 1.3E-20 177.7 12.5 155 444-599 23-236 (539)
321 TIGR01187 potA spermidine/putr 99.6 5.4E-16 1.2E-20 171.6 10.9 92 506-599 88-182 (325)
322 PRK10535 macrolide transporter 99.6 1.3E-15 2.8E-20 183.0 14.6 156 443-600 21-225 (648)
323 COG1129 MglA ABC-type sugar tr 99.6 1.1E-15 2.4E-20 174.4 13.1 157 441-599 19-226 (500)
324 PRK13409 putative ATPase RIL; 99.6 7.9E-16 1.7E-20 182.5 12.5 146 443-593 87-286 (590)
325 COG4175 ProV ABC-type proline/ 99.6 1E-15 2.2E-20 163.3 11.8 156 442-598 40-245 (386)
326 PRK10522 multidrug transporter 99.6 1.7E-15 3.8E-20 178.6 14.1 155 442-599 335-530 (547)
327 cd03278 ABC_SMC_barmotin Barmo 99.6 1.6E-15 3.4E-20 156.4 11.4 137 448-591 15-188 (197)
328 TIGR01842 type_I_sec_PrtD type 99.6 1.1E-15 2.3E-20 180.2 11.6 154 442-599 330-534 (544)
329 TIGR00955 3a01204 The Eye Pigm 99.6 1.4E-15 3.1E-20 181.7 12.0 159 441-601 36-250 (617)
330 COG0444 DppD ABC-type dipeptid 99.6 2.1E-15 4.7E-20 162.6 12.2 156 443-600 18-236 (316)
331 COG1101 PhnK ABC-type uncharac 99.6 1.7E-15 3.8E-20 154.2 10.6 159 441-601 17-232 (263)
332 PRK13657 cyclic beta-1,2-gluca 99.6 2.3E-15 5E-20 179.0 13.1 153 442-598 347-549 (588)
333 PRK11174 cysteine/glutathione 99.6 2.3E-15 4.9E-20 179.0 13.0 153 441-598 361-563 (588)
334 TIGR01194 cyc_pep_trnsptr cycl 99.6 2.7E-15 5.8E-20 177.4 13.2 155 443-599 355-551 (555)
335 KOG0062 ATPase component of AB 99.6 1.1E-15 2.3E-20 171.5 8.7 159 427-595 79-272 (582)
336 TIGR00954 3a01203 Peroxysomal 99.6 2.2E-15 4.8E-20 181.3 12.1 145 441-591 463-651 (659)
337 TIGR02203 MsbA_lipidA lipid A 99.6 3.1E-15 6.7E-20 177.0 12.9 154 442-598 344-547 (571)
338 COG4148 ModC ABC-type molybdat 99.6 2.3E-15 4.9E-20 158.3 10.2 150 446-598 14-209 (352)
339 COG4674 Uncharacterized ABC-ty 99.6 3.7E-15 7.9E-20 149.8 11.2 155 441-599 16-227 (249)
340 COG2274 SunT ABC-type bacterio 99.6 2.3E-15 4.9E-20 180.5 11.3 161 436-600 479-689 (709)
341 COG1123 ATPase components of v 99.6 5.3E-15 1.1E-19 170.0 13.7 156 443-600 304-512 (539)
342 KOG0927 Predicted transporter 99.6 1.2E-15 2.6E-20 172.0 8.2 148 444-598 404-586 (614)
343 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 3E-15 6.4E-20 181.8 11.9 153 441-600 490-693 (710)
344 TIGR01192 chvA glucan exporter 99.6 4.2E-15 9.1E-20 176.8 12.9 153 443-599 348-550 (585)
345 COG4988 CydD ABC-type transpor 99.6 2E-15 4.3E-20 173.0 9.7 162 434-600 326-536 (559)
346 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 5.4E-15 1.2E-19 178.9 13.7 153 441-600 464-666 (686)
347 COG4987 CydC ABC-type transpor 99.6 4.1E-15 8.9E-20 168.2 11.7 169 429-601 337-555 (573)
348 PRK11176 lipid transporter ATP 99.6 3.7E-15 8.1E-20 176.9 12.0 153 442-599 355-559 (582)
349 PRK10789 putative multidrug tr 99.6 5.5E-15 1.2E-19 175.2 12.8 154 441-599 326-530 (569)
350 PRK11160 cysteine/glutathione 99.6 6.3E-15 1.4E-19 174.9 13.1 153 442-599 352-554 (574)
351 PRK10790 putative multidrug tr 99.6 8.6E-15 1.9E-19 174.2 14.2 152 442-598 353-554 (592)
352 COG3845 ABC-type uncharacteriz 99.6 5.9E-15 1.3E-19 165.8 11.8 154 442-597 16-219 (501)
353 TIGR03375 type_I_sec_LssB type 99.6 7.2E-15 1.6E-19 178.0 13.6 152 442-598 477-679 (694)
354 cd03279 ABC_sbcCD SbcCD and ot 99.6 6.6E-15 1.4E-19 153.3 10.3 146 447-594 18-209 (213)
355 TIGR02204 MsbA_rel ABC transpo 99.6 6.5E-15 1.4E-19 174.6 11.6 153 443-599 353-555 (576)
356 COG4107 PhnK ABC-type phosphon 99.6 1.7E-14 3.7E-19 142.4 12.1 156 441-599 17-233 (258)
357 TIGR01846 type_I_sec_HlyB type 99.6 9E-15 2E-19 177.2 12.3 156 441-600 468-673 (694)
358 PLN03140 ABC transporter G fam 99.6 1.1E-14 2.5E-19 187.0 13.8 158 442-601 892-1104(1470)
359 TIGR01193 bacteriocin_ABC ABC- 99.6 1.4E-14 3E-19 176.0 13.1 152 442-599 486-689 (708)
360 COG4608 AppF ABC-type oligopep 99.6 1.3E-14 2.8E-19 153.6 11.2 154 444-600 27-192 (268)
361 cd03274 ABC_SMC4_euk Eukaryoti 99.6 8.3E-15 1.8E-19 152.7 9.2 76 513-591 122-202 (212)
362 cd03240 ABC_Rad50 The catalyti 99.6 1.6E-14 3.4E-19 149.7 11.0 77 513-591 110-195 (204)
363 cd03271 ABC_UvrA_II The excisi 99.5 2.6E-14 5.7E-19 153.2 12.4 92 506-599 156-258 (261)
364 KOG0059 Lipid exporter ABCA1 a 99.5 1.6E-14 3.5E-19 178.6 11.9 153 445-599 580-779 (885)
365 TIGR00958 3a01208 Conjugate Tr 99.5 1.9E-14 4E-19 174.9 12.1 152 442-599 493-694 (711)
366 PTZ00243 ABC transporter; Prov 99.5 2.4E-14 5.3E-19 185.8 13.0 157 441-599 671-862 (1560)
367 TIGR01271 CFTR_protein cystic 99.5 1.8E-14 3.8E-19 186.7 11.6 154 443-599 439-628 (1490)
368 KOG0057 Mitochondrial Fe/S clu 99.5 5.6E-14 1.2E-18 159.2 14.0 154 442-599 364-566 (591)
369 TIGR00956 3a01205 Pleiotropic 99.5 2.1E-14 4.5E-19 184.8 11.8 157 442-600 775-986 (1394)
370 TIGR02857 CydD thiol reductant 99.5 2.8E-14 6.1E-19 167.6 11.4 144 443-589 335-527 (529)
371 KOG0927 Predicted transporter 99.5 2.7E-13 5.9E-18 153.2 18.4 151 441-596 86-297 (614)
372 cd03272 ABC_SMC3_euk Eukaryoti 99.5 6.4E-14 1.4E-18 148.1 11.2 75 514-591 154-233 (243)
373 TIGR00956 3a01205 Pleiotropic 99.5 5.3E-14 1.1E-18 181.1 11.9 157 442-600 73-293 (1394)
374 COG4618 ArpD ABC-type protease 99.5 1.2E-13 2.6E-18 155.3 13.1 155 441-597 347-550 (580)
375 PLN03140 ABC transporter G fam 99.5 4.1E-14 8.9E-19 181.9 10.0 82 517-600 335-420 (1470)
376 PTZ00265 multidrug resistance 99.5 1.4E-13 3.1E-18 177.5 13.4 77 517-595 578-656 (1466)
377 TIGR02868 CydC thiol reductant 99.5 1.9E-13 4.1E-18 160.6 12.7 132 443-579 348-529 (529)
378 KOG0061 Transporter, ABC super 99.5 1.3E-13 2.8E-18 164.2 11.0 157 442-601 42-254 (613)
379 cd03275 ABC_SMC1_euk Eukaryoti 99.5 2.9E-13 6.3E-18 144.1 12.2 73 517-591 154-231 (247)
380 COG4136 ABC-type uncharacteriz 99.5 2.2E-13 4.7E-18 131.9 9.3 141 441-583 13-199 (213)
381 cd03276 ABC_SMC6_euk Eukaryoti 99.4 2.8E-13 6.1E-18 139.7 10.6 142 447-588 13-185 (198)
382 COG1132 MdlB ABC-type multidru 99.4 3.5E-13 7.5E-18 159.8 12.8 154 442-600 341-545 (567)
383 TIGR00957 MRP_assoc_pro multi 99.4 2.8E-13 6E-18 176.2 12.8 156 442-599 650-842 (1522)
384 PLN03232 ABC transporter C fam 99.4 4.2E-13 9E-18 174.3 13.6 156 442-599 629-820 (1495)
385 cd03273 ABC_SMC2_euk Eukaryoti 99.4 6.4E-13 1.4E-17 141.7 12.0 76 514-592 162-242 (251)
386 PLN03130 ABC transporter C fam 99.4 6.4E-13 1.4E-17 173.0 14.2 155 442-599 629-820 (1622)
387 KOG0055 Multidrug/pheromone ex 99.4 7.3E-13 1.6E-17 162.6 13.0 153 442-598 365-567 (1228)
388 COG4778 PhnL ABC-type phosphon 99.4 6E-13 1.3E-17 131.3 9.8 146 443-591 24-225 (235)
389 KOG0066 eIF2-interacting prote 99.4 2.9E-13 6.3E-18 148.6 8.4 135 441-582 598-764 (807)
390 PTZ00265 multidrug resistance 99.4 1E-12 2.2E-17 169.7 13.7 78 518-597 1358-1441(1466)
391 COG4615 PvdE ABC-type sideroph 99.4 1.4E-12 3E-17 142.6 12.0 153 444-598 337-528 (546)
392 COG4138 BtuD ABC-type cobalami 99.4 3.1E-13 6.7E-18 133.8 6.2 148 449-600 18-214 (248)
393 cd03239 ABC_SMC_head The struc 99.4 9.7E-13 2.1E-17 133.6 9.9 130 457-593 24-172 (178)
394 COG4172 ABC-type uncharacteriz 99.4 2.1E-12 4.6E-17 141.7 11.5 155 443-601 300-510 (534)
395 KOG0058 Peptide exporter, ABC 99.4 1.6E-12 3.4E-17 152.1 11.1 154 442-599 480-683 (716)
396 PLN03232 ABC transporter C fam 99.3 2.3E-12 5.1E-17 167.4 12.0 160 436-598 1242-1449(1495)
397 COG1245 Predicted ATPase, RNas 99.3 4.1E-12 8.8E-17 141.2 12.0 142 453-601 365-532 (591)
398 PLN03130 ABC transporter C fam 99.3 2.9E-12 6.2E-17 167.0 12.6 160 436-598 1245-1452(1622)
399 TIGR01271 CFTR_protein cystic 99.3 4.7E-12 1E-16 164.4 14.1 156 436-597 1225-1430(1490)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.3 3.6E-12 7.8E-17 133.1 9.7 71 515-587 123-201 (213)
401 PF00005 ABC_tran: ABC transpo 99.3 2.5E-12 5.4E-17 123.6 7.4 101 446-546 1-137 (137)
402 PTZ00243 ABC transporter; Prov 99.3 5.3E-12 1.2E-16 164.3 12.6 154 441-598 1321-1524(1560)
403 TIGR00957 MRP_assoc_pro multi 99.3 6E-12 1.3E-16 163.9 12.5 155 441-598 1297-1499(1522)
404 COG4172 ABC-type uncharacteriz 99.3 1.5E-11 3.3E-16 135.1 13.1 156 441-598 21-238 (534)
405 TIGR00630 uvra excinuclease AB 99.3 8.8E-12 1.9E-16 153.4 12.1 87 512-600 822-918 (924)
406 PF05192 MutS_III: MutS domain 99.3 2.3E-11 5E-16 124.4 12.0 191 52-337 2-204 (204)
407 COG1245 Predicted ATPase, RNas 99.3 1.5E-11 3.3E-16 136.7 10.9 136 453-591 98-285 (591)
408 PRK00349 uvrA excinuclease ABC 99.2 3.6E-11 7.8E-16 148.4 13.8 87 512-600 824-920 (943)
409 PRK00635 excinuclease ABC subu 99.2 4.1E-11 8.8E-16 154.0 13.4 92 506-599 796-898 (1809)
410 KOG0062 ATPase component of AB 99.2 1.2E-11 2.7E-16 139.3 7.3 147 444-597 378-558 (582)
411 COG4178 ABC-type uncharacteriz 99.2 4.3E-11 9.4E-16 139.6 10.5 146 441-589 404-584 (604)
412 KOG0066 eIF2-interacting prote 99.2 6.4E-11 1.4E-15 130.5 10.0 75 517-596 411-487 (807)
413 KOG0056 Heavy metal exporter H 99.2 1.2E-10 2.6E-15 130.0 11.4 154 441-600 549-754 (790)
414 KOG0055 Multidrug/pheromone ex 99.1 1.7E-10 3.6E-15 142.2 12.1 155 441-600 1001-1206(1228)
415 KOG2355 Predicted ABC-type tra 99.1 2E-10 4.2E-15 116.7 9.8 164 430-597 15-227 (291)
416 COG2401 ABC-type ATPase fused 99.1 4.1E-10 9E-15 124.1 12.1 142 441-583 394-572 (593)
417 COG4167 SapF ABC-type antimicr 99.1 9.7E-10 2.1E-14 109.9 13.1 80 521-601 153-233 (267)
418 KOG0065 Pleiotropic drug resis 99.1 6.3E-11 1.4E-15 145.9 5.4 157 441-599 802-1013(1391)
419 cd03241 ABC_RecN RecN ATPase i 99.1 5.8E-10 1.3E-14 120.9 11.5 74 519-595 171-249 (276)
420 KOG0064 Peroxisomal long-chain 99.0 1.5E-09 3.2E-14 122.7 10.4 142 440-586 492-676 (728)
421 KOG0060 Long-chain acyl-CoA tr 99.0 2.1E-09 4.6E-14 123.0 11.4 145 442-591 447-639 (659)
422 KOG0054 Multidrug resistance-a 98.9 2.9E-09 6.2E-14 134.1 11.4 156 442-599 533-723 (1381)
423 COG5265 ATM1 ABC-type transpor 98.9 5.2E-09 1.1E-13 116.2 10.4 152 441-600 274-479 (497)
424 PF02463 SMC_N: RecF/RecN/SMC 98.9 1.5E-08 3.3E-13 105.6 12.5 71 518-591 136-211 (220)
425 COG3910 Predicted ATPase [Gene 98.8 1E-08 2.2E-13 103.2 8.6 64 520-585 131-194 (233)
426 PRK00635 excinuclease ABC subu 98.8 1.3E-08 2.8E-13 131.5 11.6 75 515-591 1696-1774(1809)
427 COG1129 MglA ABC-type sugar tr 98.8 1.5E-08 3.3E-13 116.5 10.8 150 445-597 274-480 (500)
428 cd03242 ABC_RecF RecF is a rec 98.8 1.9E-08 4.2E-13 108.7 10.3 59 533-596 208-269 (270)
429 COG4170 SapD ABC-type antimicr 98.8 4.3E-08 9.3E-13 100.1 11.2 75 521-596 162-237 (330)
430 COG0178 UvrA Excinuclease ATPa 98.7 2.6E-08 5.7E-13 117.9 9.8 73 515-589 819-895 (935)
431 KOG0054 Multidrug resistance-a 98.7 4.8E-08 1E-12 123.4 10.7 160 434-597 1144-1352(1381)
432 TIGR02858 spore_III_AA stage I 98.7 5.1E-08 1.1E-12 105.5 9.1 44 533-585 192-235 (270)
433 PRK08533 flagellar accessory p 98.6 3.8E-07 8.3E-12 96.5 12.0 121 453-577 22-161 (230)
434 PRK13695 putative NTPase; Prov 98.6 1.3E-07 2.8E-12 95.4 7.8 62 531-596 92-153 (174)
435 PF13304 AAA_21: AAA domain; P 98.6 9.7E-08 2.1E-12 97.9 7.1 61 520-582 238-302 (303)
436 KOG0063 RNAse L inhibitor, ABC 98.5 2.5E-07 5.4E-12 102.9 9.9 134 453-588 365-527 (592)
437 TIGR00630 uvra excinuclease AB 98.5 1.7E-07 3.6E-12 116.2 8.7 95 503-599 471-575 (924)
438 PRK00349 uvrA excinuclease ABC 98.5 2.5E-07 5.5E-12 114.8 8.8 95 503-599 473-577 (943)
439 cd01124 KaiC KaiC is a circadi 98.4 6.2E-07 1.3E-11 90.6 7.8 120 458-581 2-142 (187)
440 cd01120 RecA-like_NTPases RecA 98.3 2.1E-06 4.5E-11 83.5 9.4 122 457-580 1-138 (165)
441 PRK06067 flagellar accessory p 98.3 4.2E-06 9.2E-11 88.4 11.3 143 453-599 23-186 (234)
442 PRK07721 fliI flagellum-specif 98.3 3E-06 6.5E-11 97.5 10.2 151 442-601 145-337 (438)
443 smart00382 AAA ATPases associa 98.2 1.2E-05 2.6E-10 74.9 10.2 23 455-477 2-24 (148)
444 KOG0063 RNAse L inhibitor, ABC 98.1 4.6E-06 1E-10 93.1 7.7 72 514-587 209-281 (592)
445 TIGR00634 recN DNA repair prot 98.1 1.4E-05 3.1E-10 95.2 11.7 114 518-640 440-561 (563)
446 cd01131 PilT Pilus retraction 98.0 1.2E-05 2.5E-10 83.3 7.7 47 533-588 72-118 (198)
447 PRK10869 recombination and rep 98.0 2.5E-05 5.4E-10 92.8 11.5 114 518-640 430-551 (553)
448 KOG0065 Pleiotropic drug resis 98.0 1.1E-05 2.4E-10 100.7 7.7 157 443-600 128-344 (1391)
449 TIGR02788 VirB11 P-type DNA tr 98.0 6.8E-06 1.5E-10 90.8 5.0 56 532-596 215-270 (308)
450 COG3845 ABC-type uncharacteriz 97.9 5.1E-05 1.1E-09 86.6 9.6 166 429-597 258-482 (501)
451 PRK03918 chromosome segregatio 97.8 3.5E-05 7.5E-10 96.5 8.7 77 514-592 784-867 (880)
452 TIGR00618 sbcc exonuclease Sbc 97.8 2.7E-05 5.8E-10 99.3 7.2 76 514-591 946-1033(1042)
453 PRK01156 chromosome segregatio 97.8 4.9E-05 1.1E-09 95.5 8.9 78 515-592 798-883 (895)
454 PF13555 AAA_29: P-loop contai 97.8 2.3E-05 5E-10 66.1 3.9 32 447-478 15-46 (62)
455 cd00820 PEPCK_HprK Phosphoenol 97.7 3.1E-05 6.6E-10 72.5 4.1 34 443-476 2-36 (107)
456 cd00009 AAA The AAA+ (ATPases 97.7 0.00015 3.3E-09 68.3 8.4 25 454-478 18-42 (151)
457 PHA02562 46 endonuclease subun 97.7 6.5E-05 1.4E-09 89.3 6.7 75 515-593 465-551 (562)
458 TIGR00606 rad50 rad50. This fa 97.6 0.00016 3.4E-09 94.3 10.5 69 516-585 1197-1277(1311)
459 TIGR01420 pilT_fam pilus retra 97.6 0.0001 2.3E-09 82.6 7.6 114 454-583 121-234 (343)
460 cd01125 repA Hexameric Replica 97.6 0.00028 6E-09 74.9 10.1 46 533-580 109-160 (239)
461 PRK06793 fliI flagellum-specif 97.6 5.5E-05 1.2E-09 86.8 4.8 138 451-596 151-300 (432)
462 PRK04296 thymidine kinase; Pro 97.6 0.00042 9.2E-09 71.2 10.7 142 455-611 2-158 (190)
463 PRK09183 transposase/IS protei 97.5 0.00035 7.6E-09 75.4 9.8 107 450-578 97-205 (259)
464 TIGR02168 SMC_prok_B chromosom 97.5 0.00013 2.7E-09 93.6 6.9 76 514-592 1085-1165(1179)
465 PRK06893 DNA replication initi 97.5 0.0012 2.5E-08 69.9 13.0 94 456-580 40-135 (229)
466 PRK13830 conjugal transfer pro 97.5 0.00056 1.2E-08 85.1 11.9 48 533-582 650-698 (818)
467 PRK10246 exonuclease subunit S 97.5 0.00019 4E-09 91.6 7.8 68 514-583 945-1021(1047)
468 PRK14088 dnaA chromosomal repl 97.5 0.001 2.2E-08 77.3 13.0 166 458-655 133-310 (440)
469 cd01130 VirB11-like_ATPase Typ 97.5 0.00015 3.2E-09 74.2 5.5 26 453-478 23-48 (186)
470 TIGR03185 DNA_S_dndD DNA sulfu 97.4 0.001 2.2E-08 80.8 13.2 33 448-480 19-53 (650)
471 PTZ00132 GTP-binding nuclear p 97.4 0.00021 4.4E-09 74.3 6.2 38 527-565 162-204 (215)
472 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.002 4.3E-08 67.7 13.3 64 535-599 121-188 (229)
473 TIGR01026 fliI_yscN ATPase Fli 97.4 0.00061 1.3E-08 78.8 10.1 54 545-601 282-342 (440)
474 PRK14721 flhF flagellar biosyn 97.4 0.0004 8.6E-09 79.7 8.0 91 453-553 189-285 (420)
475 PTZ00454 26S protease regulato 97.4 0.00086 1.9E-08 76.8 10.5 22 456-477 180-201 (398)
476 PRK10865 protein disaggregatio 97.4 0.0045 9.8E-08 77.5 17.7 116 457-582 201-320 (857)
477 cd01128 rho_factor Transcripti 97.3 0.00027 5.9E-09 75.9 5.4 67 524-596 144-211 (249)
478 cd02023 UMPK Uridine monophosp 97.3 8.9E-05 1.9E-09 76.2 1.4 23 457-479 1-23 (198)
479 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.0019 4.1E-08 67.9 11.5 26 453-478 17-42 (235)
480 PLN03210 Resistant to P. syrin 97.3 0.00052 1.1E-08 88.6 8.2 25 453-477 205-229 (1153)
481 PRK06995 flhF flagellar biosyn 97.2 0.00072 1.6E-08 78.8 8.3 29 453-481 254-282 (484)
482 PRK06526 transposase; Provisio 97.2 0.0012 2.7E-08 71.0 9.5 105 453-579 96-201 (254)
483 TIGR03015 pepcterm_ATPase puta 97.2 0.0015 3.3E-08 69.9 9.9 23 454-476 42-64 (269)
484 PF00004 AAA: ATPase family as 97.2 0.0013 2.9E-08 61.9 8.3 20 458-477 1-20 (132)
485 COG0419 SbcC ATPase involved i 97.2 0.00066 1.4E-08 85.6 7.7 79 513-593 810-897 (908)
486 PRK14087 dnaA chromosomal repl 97.2 0.0028 6E-08 73.8 12.1 102 458-579 144-249 (450)
487 PRK13898 type IV secretion sys 97.2 0.0036 7.7E-08 78.0 13.6 48 533-582 640-688 (800)
488 PRK02224 chromosome segregatio 97.1 0.0007 1.5E-08 85.0 7.3 55 537-592 813-867 (880)
489 PRK06921 hypothetical protein; 97.1 0.0026 5.7E-08 69.0 10.8 100 455-578 117-224 (266)
490 PF09818 ABC_ATPase: Predicted 97.1 0.002 4.4E-08 73.4 10.0 137 453-596 243-416 (448)
491 PRK14723 flhF flagellar biosyn 97.1 0.00079 1.7E-08 82.0 7.0 90 453-550 183-279 (767)
492 TIGR02169 SMC_prok_A chromosom 97.1 0.00061 1.3E-08 87.5 6.4 76 514-592 1070-1150(1164)
493 PRK07952 DNA replication prote 97.1 0.0023 4.9E-08 68.6 9.5 104 457-578 101-204 (244)
494 PF13481 AAA_25: AAA domain; P 97.1 0.0038 8.1E-08 63.5 10.8 28 453-480 30-57 (193)
495 TIGR03345 VI_ClpV1 type VI sec 97.1 0.011 2.4E-07 74.0 16.9 21 458-478 211-231 (852)
496 PRK14722 flhF flagellar biosyn 97.1 0.00074 1.6E-08 76.4 6.0 27 453-479 135-161 (374)
497 PF05190 MutS_IV: MutS family 97.1 0.0041 8.9E-08 55.7 9.6 89 206-295 1-91 (92)
498 PRK11889 flhF flagellar biosyn 97.0 0.0026 5.5E-08 72.3 9.9 25 454-478 240-264 (436)
499 PF13401 AAA_22: AAA domain; P 97.0 0.00054 1.2E-08 64.9 3.8 25 454-478 3-27 (131)
500 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0056 1.2E-07 64.2 11.7 122 453-579 14-154 (224)
No 1
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=2.1e-102 Score=936.60 Aligned_cols=676 Identities=33% Similarity=0.504 Sum_probs=586.1
Q ss_pred hhHhhhhhcChHHHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhHHHHH
Q 003142 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAI 128 (844)
Q Consensus 49 m~~~~l~~Le~~~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~~~~~~~~~~~i~~~~v~~~l 128 (844)
|++++++.|||++|+++|+.||.|++|++++..+.| ..++++++++|++|.+|+.++...+ .++|+++. |+++.+
T Consensus 1 m~~~~~~~Le~~~i~~~l~~~~~t~~Gk~~l~~l~P--~~~~~~i~~~l~~~~e~~~~~~~~~-~~~l~~~~--Di~~~l 75 (782)
T PRK00409 1 MQEKTLRVLEFNKIKEQLKTFAASELGKEKVLQLDP--ETDFEEVEELLEETDEAAKLLRLKG-LPPFEGVK--DIDDAL 75 (782)
T ss_pred CChhhHhhCCHHHHHHHHHhHcCCHHHHHHHHcCCC--CCCHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCc--cHHHHH
Confidence 677899999999999999999999999999999754 5899999999999999998886553 67899987 589999
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHccccCcCCccCCCCC
Q 003142 129 REVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSAS 208 (844)
Q Consensus 129 ~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~i~~~id~~G~v~D~AS 208 (844)
.++.+|++|++.||..|+.+|.++..+++++... . .. ..+|.|..++..+.+++.+.+.|.+|||++|.|+|+||
T Consensus 76 ~r~~~g~~l~~~eL~~i~~~l~~~~~l~~~l~~~-~--~~--~~~~~L~~~~~~l~~~~~l~~~i~~~id~~g~i~d~aS 150 (782)
T PRK00409 76 KRAEKGGVLSGDELLEIAKTLRYFRQLKRFIEDL-E--EE--EELPILEEWVAKIRTLPELEQEIHNCIDEEGEVKDSAS 150 (782)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc-c--cc--cchhHHHHHHHcCcCcHHHHHHHHHHhCCCCEECCCCC
Confidence 9999999999999999999999999999877531 0 00 12567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--cEEeeCCEEEEEecCCcc-ccccEEee-cccCCeEEEeccccc
Q 003142 209 PALKQSRGQVQMLERKLYQLMDMLIRNENNESLFL--EVSSIHGRLCIRTGADQL-SFKGLLLS-SSSGIGSVIEPLSAV 284 (844)
Q Consensus 209 ~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~t~r~gr~vi~v~~~~~-~~~giv~~-S~sG~t~~iEP~~~v 284 (844)
|+|++||++++.+++++++.++++++......+++ .+|+|+|||||||+++++ .+||+||+ |+||+|+|+||.+++
T Consensus 151 ~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~d~~it~r~~r~~i~vk~~~~~~~~g~v~~~s~sg~t~y~ep~~~~ 230 (782)
T PRK00409 151 EKLRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRNDRYVLPVKAEYKHAIKGIVHDQSSSGATLYIEPQSVV 230 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEECCEEEEEechhhhccCCCceeeEECCCCEEEEEcHHHH
Confidence 99999999999999999999999998776445554 699999999999999999 99999998 999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeCCcccccccCCCCc
Q 003142 285 PLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPV 364 (844)
Q Consensus 285 ~lnn~l~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~ 364 (844)
++||++.++..++++++.+|+++|+..|..+.+.|..+++.+++||+++|+|+||.+++||+|.|+.
T Consensus 231 ~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~------------- 297 (782)
T PRK00409 231 ELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKALKATFPLFND------------- 297 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccceEcC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred ccccCCccccceEEecCCcchHHHHHhHHhhHHHHHhhHHhHHHHHHhhhcCCCcccCCCccCCCCCchhhhhhccCCcc
Q 003142 365 TSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHP 444 (844)
Q Consensus 365 ~~~~~~~~~~~~i~l~~~rHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (844)
+..+.+.++|||+|. ...+
T Consensus 298 ---------~~~i~l~~~rHPll~----------------------------------------------------~~~~ 316 (782)
T PRK00409 298 ---------EGKIDLRQARHPLLD----------------------------------------------------GEKV 316 (782)
T ss_pred ---------CCcEEEcCcCCceec----------------------------------------------------cCce
Confidence 345999999999983 2468
Q ss_pred ceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhh
Q 003142 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLK 524 (844)
Q Consensus 445 V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~ 524 (844)
||+|+.++.++++++|||||||||||+||++|++.+|+|+|+|+|+...+.+++|+++|.++|+.+++..++|+||++|+
T Consensus 317 Vpndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~ 396 (782)
T PRK00409 317 VPKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMT 396 (782)
T ss_pred ECceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHH
Confidence 99999999888999999999999999999999999999999999996567999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEecccce
Q 003142 525 QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLK 604 (844)
Q Consensus 525 rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~~~l~ 604 (844)
++..++..+++|+|+||||||+||||.++.+++.++++++.+.|++ +|+|||+.+++.++.....+.|++|.||.+++.
T Consensus 397 ~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~-vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~ 475 (782)
T PRK00409 397 NIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAK-IIATTHYKELKALMYNREGVENASVEFDEETLR 475 (782)
T ss_pred HHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEECChHHHHHHHhcCCCeEEEEEEEecCcCc
Confidence 9999999889999999999999999999999998999999888886 999999999999999999999999999999999
Q ss_pred eeEEeecCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003142 605 PTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLR 684 (844)
Q Consensus 605 p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~l~~~~~~le~~i~~Le~~~~~~e~~~~~~~~~~~~~~~~~~~l~~ 684 (844)
|+|++..|+||+|||++||+++|+|++|+++|+.++..+..+++++|++|++++.+++++..+++..+++++++++++++
T Consensus 476 ~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~ 555 (782)
T PRK00409 476 PTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEE 555 (782)
T ss_pred EEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998777777766666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhchhhhccccchhhccccccccccc
Q 003142 685 TRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNF 764 (844)
Q Consensus 685 ~~~~l~e~~~~~~~~~~~~~~~a~~ea~~~l~~~~~e~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (844)
+.++++ +++.+.+++++++|++++++++++ +++++++..+ .+.........+...+.++.+...
T Consensus 556 ~~~~l~-------~~~~~~~~~~~~~a~~~l~~a~~~-------~~~~i~~lk~-~~~~~~~~~~~~~~~~~~~~l~~~- 619 (782)
T PRK00409 556 KKEKLQ-------EEEDKLLEEAEKEAQQAIKEAKKE-------ADEIIKELRQ-LQKGGYASVKAHELIEARKRLNKA- 619 (782)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-hhhcccchhhHHHHHHHHHHHHHh-
Confidence 555554 466678888888999999988877 7777754321 110000000111111112111000
Q ss_pred cccccccccCccccccchhhcccCCCcccCCCCCCCCCEEEEccCCceEEEEEecCCCceEEEEEceeEEEeecCCee
Q 003142 765 QQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIV 842 (844)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~v~~~~~~G~V~~i~~~~~~~~Vq~G~~k~~v~~~~l~ 842 (844)
... ..+.... .......+++||.|+|.++|+.|+|+++++ ++.++||+|+|||+|+.++|+
T Consensus 620 ----~~~-----------~~~~~~~-~~~~~~~~~~Gd~V~v~~~~~~g~v~~i~~-~~~~~V~~g~~k~~v~~~~l~ 680 (782)
T PRK00409 620 ----NEK-----------KEKKKKK-QKEKQEELKVGDEVKYLSLGQKGEVLSIPD-DKEAIVQAGIMKMKVPLSDLE 680 (782)
T ss_pred ----hhh-----------hhhcccc-ccccccCCCCCCEEEEccCCceEEEEEEcC-CCeEEEEECCEEEEEeHHHce
Confidence 000 0000000 001114699999999999999999999974 568999999999999999985
No 2
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=1.4e-101 Score=927.22 Aligned_cols=664 Identities=31% Similarity=0.455 Sum_probs=581.1
Q ss_pred hhHhhhhhcChHHHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhHHHHH
Q 003142 49 VVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAI 128 (844)
Q Consensus 49 m~~~~l~~Le~~~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~~~~~~~~~~~i~~~~v~~~l 128 (844)
|++++++.|||++|++.++.||.|++|++.+..+.| ..++++++++|++|.+|..+.. +++|+++. |+++.+
T Consensus 1 m~~~~l~~Lef~~i~~~l~~~~~t~~gk~~~~~l~P--~~~~~~i~~~l~~~~e~~~~~~----~~~l~~~~--di~~~l 72 (771)
T TIGR01069 1 MREKDLIKLEFDKVKENLLKQTFTPLGKEDAIGLKP--PKSVEESKEIIIKLTALGSIEN----NVRFFGFE--DIRELL 72 (771)
T ss_pred CChhhHHhcCHHHHHHHHHHHcCCHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHHHhhc----cCCcCCCc--cHHHHH
Confidence 678999999999999999999999999999999755 5799999999999999998875 56799987 599999
Q ss_pred HhcccCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHccccCcCCccCCCC
Q 003142 129 REVRRASPLRPNE-ALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSA 207 (844)
Q Consensus 129 ~ra~~g~~L~~~E-L~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~i~~~id~~G~v~D~A 207 (844)
.+++.|++|++.| |+.|+.+|..+..++.++.. . . .+|.|..++..+.+++.|.+.|.+|||++|.|+|+|
T Consensus 73 ~r~~~g~~l~~~e~l~~i~~~l~~~~~l~~~l~~----~-~---~~~~L~~~~~~l~~~~~l~~~i~~~id~~g~i~d~a 144 (771)
T TIGR01069 73 KRAELGGIVKGLEYILVIQNALKTVKHLKVLSEH----V-L---DLEILFHLRLNLITLPPLENDIIACIDDDGKVKDGA 144 (771)
T ss_pred HHHhcCCcCChHHHHHHHHHHHHHHHHHHHHHhc----c-c---cchHHHHHHhcCCCcHHHHHHHHHHhCCCCEECCCc
Confidence 9999999999988 99999999999999877643 1 1 367899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--cEEeeCCEEEEEecCCcc-ccccEEee-cccCCeEEEecccc
Q 003142 208 SPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFL--EVSSIHGRLCIRTGADQL-SFKGLLLS-SSSGIGSVIEPLSA 283 (844)
Q Consensus 208 S~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~t~r~gr~vi~v~~~~~-~~~giv~~-S~sG~t~~iEP~~~ 283 (844)
||+|++||++++.+++++++.+++++++.....+++ .+|+|+|||||||+++++ .+||+||+ |+||+|+|+||.++
T Consensus 145 S~~L~~ir~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~it~r~~r~vipvk~~~~~~i~g~v~~~S~sg~t~~~ep~~~ 224 (771)
T TIGR01069 145 SEELDAIRESLKALEEEVVKRLHKIIRSKELAKYLSDTIVTIRNGRYVLPLKSGFKGKIKGIVHDTSSSGETFYIEPQAI 224 (771)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCceEEEECCEEEEEeeHHHhhcCCCeEEEEeCCCCEEEEEcHHH
Confidence 999999999999999999999999998765545555 499999999999999999 99999998 99999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeCCcccccccCCCC
Q 003142 284 VPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEP 363 (844)
Q Consensus 284 v~lnn~l~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~~~~ 363 (844)
|+|||++.+++.++++++.+|+++|+..|.++.+.|..+++.+++||+++|+|+||..+++++|.+..
T Consensus 225 ~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~------------ 292 (771)
T TIGR01069 225 VKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARARYAKAVKGEFPMPSF------------ 292 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeceecC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred cccccCCccccceEEecCCcchHHHHHhHHhhHHHHHhhHHhHHHHHHhhhcCCCcccCCCccCCCCCchhhhhhccCCc
Q 003142 364 VTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAH 443 (844)
Q Consensus 364 ~~~~~~~~~~~~~i~l~~~rHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (844)
.+.+.+.++|||++. ...
T Consensus 293 ----------~~~i~l~~~rhPll~----------------------------------------------------~~~ 310 (771)
T TIGR01069 293 ----------TGKIILENARHPLLK----------------------------------------------------EPK 310 (771)
T ss_pred ----------CCCEEEccccCceec----------------------------------------------------CCc
Confidence 236999999999983 135
Q ss_pred cceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHh
Q 003142 444 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHL 523 (844)
Q Consensus 444 ~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~ 523 (844)
+||+|+.++.+.++++|+||||||||||||+|+++.+|+++|+++|+.....+++|++++.++++.+++..++|+||++|
T Consensus 311 ~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m 390 (771)
T TIGR01069 311 VVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHM 390 (771)
T ss_pred eEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHH
Confidence 89999999977788999999999999999999999999999999999666789999999999999999999999999999
Q ss_pred hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEecccc
Q 003142 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKL 603 (844)
Q Consensus 524 ~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~~~l 603 (844)
+++..++..+.+|+||||||||+||||.++.+++.++++++.+.|++ +|+|||+.+++.++.....+.|++|.||.+++
T Consensus 391 ~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~-viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l 469 (771)
T TIGR01069 391 KNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQ-VLITTHYKELKALMYNNEGVENASVLFDEETL 469 (771)
T ss_pred HHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEECChHHHHHHhcCCCCeEEeEEEEcCCCC
Confidence 99999999889999999999999999999999998999999988887 99999999999999999999999999999999
Q ss_pred eeeEEeecCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003142 604 KPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLL 683 (844)
Q Consensus 604 ~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~l~~~~~~le~~i~~Le~~~~~~e~~~~~~~~~~~~~~~~~~~l~ 683 (844)
.|+|++..|+||.|||++||+++|+|++|+++|+.++.....+++++|++|++++.+++++..+++..++++++.+++++
T Consensus 470 ~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~ 549 (771)
T TIGR01069 470 SPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELE 549 (771)
T ss_pred ceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999877776666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhchhhhccccchhhcccccccccc
Q 003142 684 RTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSN 763 (844)
Q Consensus 684 ~~~~~l~e~~~~~~~~~~~~~~~a~~ea~~~l~~~~~e~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (844)
++.++++ +++.+.+++|+++|++++++++++ ++.++++ +++.... .....++++.+..
T Consensus 550 ~~~~~l~-------~~~~~~~~~a~~ea~~~~~~a~~~-------~~~~i~~----lk~~~~~---~~~~~~~~~~~~~- 607 (771)
T TIGR01069 550 QEMEELK-------ERERNKKLELEKEAQEALKALKKE-------VESIIRE----LKEKKIH---KAKEIKSIEDLVK- 607 (771)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH----HHhcccc---HHHHHHHHHHHHH-
Confidence 5555554 466788889999999999998887 7777654 3321100 1111111111100
Q ss_pred ccccccccccCccccccchhhcccCCCcccCCCCCCCCCEEEEccCCceEEEEEecCCCceEEEEEceeEEEeecCCeee
Q 003142 764 FQQTTVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIVT 843 (844)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~v~~~~~~G~V~~i~~~~~~~~Vq~G~~k~~v~~~~l~~ 843 (844)
... .. ......+. ..... ++||.|+|.++|+.|+|+++++ ++.|+||+|+|||+|++++|+.
T Consensus 608 ----~~~-~~----------~~~~~~~~-~~~~~-~~Gd~V~v~~~~~~g~v~~i~~-~~~~~V~~g~~k~~v~~~~l~~ 669 (771)
T TIGR01069 608 ----LKE-TK----------QKIPQKPT-NFQAD-KIGDKVRIRYFGQKGKIVQILG-GNKWNVTVGGMRMKVHGSELEK 669 (771)
T ss_pred ----HHH-hh----------cccccccc-ccccC-CCCCEEEEccCCceEEEEEEcC-CCeEEEEECCEEEEEeHHHcee
Confidence 000 00 00000000 00133 8999999999999999999974 5789999999999999999853
No 3
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.9e-87 Score=787.31 Aligned_cols=652 Identities=33% Similarity=0.454 Sum_probs=573.5
Q ss_pred hhhhhcChHHHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchhHHHHHHhc
Q 003142 52 ESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLTGVDLSLVKSAIREV 131 (844)
Q Consensus 52 ~~l~~Le~~~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~~~~~~~~~~~i~~~~v~~~l~ra 131 (844)
++|..|||++|++.|+.||.|+.|++.+.++.| ..+.+.++..+++|.++..++... +.++++++. +++..+.++
T Consensus 2 ~~l~~le~~k~k~~~~~~~~s~~g~~~~~~l~p--~~~~~~i~~~~~e~~~~~~~~~~~-g~~~~~~l~--~i~~~l~~~ 76 (753)
T COG1193 2 KTLEMLEFDKIKELLASYAQSSLGLEELKNLKP--RTDLELIEEELSETAEALDILEDE-GLPPLGGLN--DVSEALGRL 76 (753)
T ss_pred chHhhccchHHHHHHHHhccCHHHHHHHHhcCc--cccHHHHHHHHHHHHHHHHHHhcc-CCCCchhhh--hhHHHHHHH
Confidence 689999999999999999999999999999876 578999999999999999998764 367899998 599999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHccccCcCCccCCCCCHHH
Q 003142 132 RRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDEDGSIKDSASPAL 211 (844)
Q Consensus 132 ~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~i~~~id~~G~v~D~AS~~L 211 (844)
.+|+.|.++||+.|..+|.+.+.+++++...-. +. ..++..+..++.+...|..|||++|.|.|.||++|
T Consensus 77 e~g~~l~~~el~~i~~~l~~~~~lkr~~~~~e~--------~~--~~~~~~~~~~~~l~~~i~~~id~~g~i~d~as~~l 146 (753)
T COG1193 77 EKGGRLHVEELLEISDFLRGFRALKRAIKKLER--------IK--RTLALALIELSDLELEINIPIDDDGLIKDRASFEL 146 (753)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhh--------HH--HHHHHhhhcchHHHHHHhhhhcccccccccccHHH
Confidence 999999999999999999999999988754311 11 46677888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccc--cEEeeCCEEEEEecCCcc-ccccEEee-cccCCeEEEecccccccH
Q 003142 212 KQSRGQVQMLERKLYQLMDMLIRNENNESLFL--EVSSIHGRLCIRTGADQL-SFKGLLLS-SSSGIGSVIEPLSAVPLN 287 (844)
Q Consensus 212 ~~iR~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~t~r~gr~vi~v~~~~~-~~~giv~~-S~sG~t~~iEP~~~v~ln 287 (844)
..||.+++.++.++++.++.+++... ..+++ .+|.|+||||+||+++|+ .++|+||+ |+||+|+|+||..+|.+|
T Consensus 147 ~~ir~~lr~~~~~i~~~l~~~~~~~~-~~~L~e~~v~~r~~r~vlpvk~~fk~~i~giv~d~sssg~tl~ieP~~vv~l~ 225 (753)
T COG1193 147 DAIRRQLRDLEEEIRDKLESLIRSKE-AKYLQDRIVTTRDGREVLPVKAEFKGAIKGIVHDTSSSGATLYIEPRSVVKLN 225 (753)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhhhh-hHhhhhceEeccCCeEEeHHHHHhhhhcCceEeecccccCeeeecchHHHhhc
Confidence 99999999999999999999998873 34444 599999999999999999 99999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeCCcccccccCCCCcccc
Q 003142 288 DELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSK 367 (844)
Q Consensus 288 n~l~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~ 367 (844)
|++.++..+++.++++|+++|+..+.++.+.+..+...++.||++.|+++|+.++.++.|.|+
T Consensus 226 n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~~~~v~P~~~----------------- 288 (753)
T COG1193 226 NELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAKALKGVKPDFS----------------- 288 (753)
T ss_pred cHhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHHhhccCCCccC-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCCccccceEEecCCcchHHHHHhHHhhHHHHHhhHHhHHHHHHhhhcCCCcccCCCccCCCCCchhhhhhccCCcccee
Q 003142 368 VSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPI 447 (844)
Q Consensus 368 ~~~~~~~~~i~l~~~rHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 447 (844)
+...|.+.++|||++. ..|++
T Consensus 289 -----~~~~l~l~~~~HPll~------------------------------------------------------~~v~~ 309 (753)
T COG1193 289 -----NDGVLELLDARHPLLK------------------------------------------------------EDVPN 309 (753)
T ss_pred -----CCceEEeccccCccCc------------------------------------------------------ccccc
Confidence 2456999999999983 22889
Q ss_pred EEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHH
Q 003142 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIG 527 (844)
Q Consensus 448 disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~ 527 (844)
++.+..+-..++|||||.+||||+||++|+..+|+|+|.++|+..++.+++|..+|.++|++|++.+.+||||+||.++.
T Consensus 310 ~i~~~~e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~ 389 (753)
T COG1193 310 DLELGEELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIV 389 (753)
T ss_pred ccccccccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhhccCcHHHHHHHHhhhHHHHHHHH
Confidence 99999777789999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEecccceeeE
Q 003142 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEVKLKPTY 607 (844)
Q Consensus 528 ~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~~~l~p~y 607 (844)
.++..++ +|+|+||.++||||.+|++++.++++++.++++. +++|||+.+++.|+..+..+.|++|+||.++++|+|
T Consensus 390 ~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~~~~-~~~tTH~~elk~~~~~~~~v~nas~~fd~etL~ptY 466 (753)
T COG1193 390 EILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEKPAK-IVATTHYRELKALAAEREGVENASMEFDAETLRPTY 466 (753)
T ss_pred HHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhcccc-eehHhhHHHHHHHHhcchhhhchhhhhhHHHhhHHH
Confidence 9995544 8999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred EeecCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003142 608 KILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRR 687 (844)
Q Consensus 608 ~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~l~~~~~~le~~i~~Le~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 687 (844)
++.+|+||+||||+||.++|+|..++++|+..++.+..+++.+|..|+....++++..+.++...+++..+...++...+
T Consensus 467 ~l~~G~~g~S~Af~ia~rlGl~~~iie~a~~~~g~~~~~~~~~i~~l~~~~~~~~~~~~~~e~~~~e~~~l~~~~s~~~~ 546 (753)
T COG1193 467 RLLEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGEEKELLEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKT 546 (753)
T ss_pred HHhcCCcccchHHHHHHHcCCCHHHHHHHHHhcCchHhHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcchh
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHhchhhhccccchhhcccccccccccccc
Q 003142 688 KILEHCASQRFRKVQKISDAAAIARSLVHKSAQQLCPSASQARSLVHKRAQQLRPSASQSLHCTKVGKNQHVLTSNFQQT 767 (844)
Q Consensus 688 ~l~e~~~~~~~~~~~~~~~a~~ea~~~l~~~~~e~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (844)
.+.+ .+.+.+..|..++...+.+++.+ +...++.. +.. +...+...+ ...
T Consensus 547 ~l~e-------~~~~~~~~a~~~~~~~~~~a~~e-------~~~~i~~~----~~~--------~~~~~~~~~----e~~ 596 (753)
T COG1193 547 SLLE-------LKAQIVVLAHMGLPVPAEEAKVE-------AVDEVKFL----KKK--------KGILDAGAF----EST 596 (753)
T ss_pred HHHH-------HHHHHHHHHHhhhHHHHHHHHHH-------HHHHHHHh----hhh--------HHHHHHHHH----HHH
Confidence 7666 44566677777777777777666 55555332 100 000000000 000
Q ss_pred ccccccCccccccchhhcccCCCcccCCCCCCCCCEEEEccCCceEEEEEecCCCceEEEEEceeEEEeecCCeee
Q 003142 768 TVDKVEHPATASSSVVKDIKQSPRVKRTELPNVGDLVHVSSFGKKGTVIKVEPSKEEIVVQVGNMKWIMKFTDIVT 843 (844)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~V~v~~~~~~G~V~~i~~~~~~~~Vq~G~~k~~v~~~~l~~ 843 (844)
..+ .+.+..+... ...|++||.|.+.+ |+.|.|+++..+.++|.||+|+|||+|+..++++
T Consensus 597 ~~~-------------~~~~~~~~~~-~~~l~~gDev~~~t-~e~G~~~~i~a~~~e~~v~~g~~kv~V~~~~~~~ 657 (753)
T COG1193 597 LKD-------------KKNKVLPEAK-KRKLKLGDEVEVIT-GEPGAVVKIIAGILEALVQSGILKVIVSHLDLEI 657 (753)
T ss_pred hhh-------------hhcccCcccc-ccCceecceeEeec-CCccceeeeeccCceeEEecceeEEEEehhHHHH
Confidence 000 0000111111 34699999999999 9999999999778899999999999999988764
No 4
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=2e-65 Score=619.77 Aligned_cols=507 Identities=22% Similarity=0.250 Sum_probs=437.5
Q ss_pred hhhhHhhhhhcChHH---------HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH--HHHcCCCCCC
Q 003142 47 SRVVYESLRVLEWDK---------LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE--MQKHGSCSLD 115 (844)
Q Consensus 47 ~~m~~~~l~~Le~~~---------i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~--~~~~~~~~~~ 115 (844)
+.|+..|++.||.-. +.. +..+|.|++|+++++.|+..|..+..+++++|+.+.++.. .+... ....
T Consensus 249 m~lD~~t~~~LEl~~~~~~~~~gSL~~-~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~-l~~~ 326 (840)
T TIGR01070 249 MQLDAATRRNLELTENLRGGKQNTLFS-VLDETKTAMGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHFFLREG-LRPL 326 (840)
T ss_pred EEeCHHHHHhccCCccCCCCCCCcHHH-HHhhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCHHHHHH-HHHH
Confidence 558888888887643 444 4488999999999999766668999999999999999987 32211 1234
Q ss_pred CCCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHcc
Q 003142 116 LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQ 195 (844)
Q Consensus 116 ~~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~i~~ 195 (844)
+.++. |+.+.+.|+..| ..++.|+..+..+|..+..++..+... ..+.|..+...+..+.++.+.|.+
T Consensus 327 L~~i~--Dlerll~ri~~~-~~~~~dl~~l~~~l~~~~~l~~~l~~~---------~~~~l~~l~~~l~~~~~l~~~i~~ 394 (840)
T TIGR01070 327 LKEVG--DLERLAARVALG-NARPRDLARLRTSLEQLPELRALLEEL---------EGPTLQALAAQIDDFSELLELLEA 394 (840)
T ss_pred hccCc--CHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHhc---------CcHHHHHHHHhcccHHHHHHHHHH
Confidence 77776 588899998876 689999999999999999988766431 123566777788888889999999
Q ss_pred ccC--------cCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccEEeeCCEEEEEecCCcc-cccc-
Q 003142 196 VVD--------EDGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKG- 265 (844)
Q Consensus 196 ~id--------~~G~v~D~AS~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~r~gr~vi~v~~~~~-~~~g- 265 (844)
+|+ ++|.|+|++|++|+.+|+..+..++.+.+..........- ..+.......++|+|+|+.++. .+||
T Consensus 395 ~i~~~~~~~~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~~l~~~~~~~~~i-~~lk~~~~~~~gy~iev~~~~~~~vp~~ 473 (840)
T TIGR01070 395 ALIENPPLVVRDGGLIREGYDEELDELRAASREGTDYLARLEARERERTGI-PTLKVGYNAVFGYYIEVTRGQLHLVPAH 473 (840)
T ss_pred HHhcCCccccccCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CceEEEEecCceEEEEEehhhhhcCCcc
Confidence 887 4678999999999999999998777666544443322111 1111122346789999999988 8998
Q ss_pred EEee-cccCCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003142 266 LLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG 344 (844)
Q Consensus 266 iv~~-S~sG~t~~iEP~~~v~lnn~l~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~ 344 (844)
++|. |.+|++.|++|. ++++|+++.+++.++.+++++|+.+|...+..+.+.|..+.+.++.||+++|+|.+|.+++|
T Consensus 474 ~i~~~s~~~~~rf~tpe-l~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~ 552 (840)
T TIGR01070 474 YRRRQTLKNAERYITPE-LKEKEDKVLEAEGKILALEKELFEELRELLKKYLEALQEAARALAELDVLANLAEVAETLHY 552 (840)
T ss_pred eEEEEeccCceEEcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 6776 999999999995 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeCCcccccccCCCCcccccCCccccceEEecCCcchHHHHHhHHhhHHHHHhhHHhHHHHHHhhhcCCCcccCCC
Q 003142 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGE 424 (844)
Q Consensus 345 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~rHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (844)
|+|.|+. +..+.++++|||+++...
T Consensus 553 ~~P~~~~----------------------~~~i~i~~~RHP~le~~~--------------------------------- 577 (840)
T TIGR01070 553 TRPRFGD----------------------DPQLRIREGRHPVVEQVL--------------------------------- 577 (840)
T ss_pred cCceecC----------------------CCcEEEEeeECHHHHhcc---------------------------------
Confidence 9999973 235999999999995311
Q ss_pred ccCCCCCchhhhhhccCCccceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhh
Q 003142 425 KDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFA 504 (844)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~ 504 (844)
++.+||||+.++.+.++++|||||+|||||+||++|++.+|+|+|+|||| ..+.+++++++|+
T Consensus 578 ----------------~~~~VpNdi~l~~~~~~~iITGPNmgGKSt~lrqvali~imAq~G~~VPA-~~a~i~~~D~Ift 640 (840)
T TIGR01070 578 ----------------RTPFVPNDLEMAHNRRMLLITGPNMGGKSTYMRQTALIALLAQIGSFVPA-ESAELPLFDRIFT 640 (840)
T ss_pred ----------------CCCeEeeeeecCCCccEEEEECCCCCCchHHHHHHHHHHHHHhcCCCccc-hheEeccccEEEE
Confidence 24699999999977789999999999999999999999999999999999 6799999999999
Q ss_pred hCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHHh
Q 003142 505 DIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKT 583 (844)
Q Consensus 505 ~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~~ 583 (844)
++|..|++..+.|||+.+|.++..|+..+++++|+||||+|+|||+.+|.++++++++++.+ .++. +|++||++++..
T Consensus 641 rig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~-~~~~TH~~eL~~ 719 (840)
T TIGR01070 641 RIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAK-TLFATHYFELTA 719 (840)
T ss_pred ecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCE-EEEEcCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 6775 999999999999
Q ss_pred hhccccceeeeEEEE--ecccceeeEEeecCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Q 003142 584 LKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642 (844)
Q Consensus 584 ~a~~~~~v~ng~v~f--d~~~l~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~l~~ 642 (844)
++.....+.|.+|.+ +.+++.|+|++..|.+++|||+++|++.|+|++|+++|+.++..
T Consensus 720 l~~~~~~v~n~~~~~~~~~~~l~flYkl~~G~~~~Sygi~VA~laGlP~~VI~rA~~il~~ 780 (840)
T TIGR01070 720 LEESLPGLKNVHVAALEHNGTIVFLHQVLPGPASKSYGLAVAALAGLPKEVIARARQILTQ 780 (840)
T ss_pred HhhhCCCeEEEEEEEEEECCcEEEEEEECCCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999988 56789999999999999999999999999999999999987643
No 5
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=1.3e-62 Score=598.10 Aligned_cols=505 Identities=22% Similarity=0.257 Sum_probs=437.2
Q ss_pred hhhhHhhhhhcChHH---------HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH--HHHcCCCCCC
Q 003142 47 SRVVYESLRVLEWDK---------LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE--MQKHGSCSLD 115 (844)
Q Consensus 47 ~~m~~~~l~~Le~~~---------i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~--~~~~~~~~~~ 115 (844)
+.|+..|++.||.-. +.. +..+|.|++|+++++.|+..|..+.++++++++.+.++.. .+... ....
T Consensus 263 m~lD~~tl~~Lei~~~~~~~~~gSL~~-~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~-l~~~ 340 (854)
T PRK05399 263 LILDAATRRNLELTENLRGGRKNSLLS-VLDRTVTAMGGRLLRRWLHRPLRDREAIEARLDAVEELLEDPLLRED-LREL 340 (854)
T ss_pred EEcCHHHHHhccCCccCCCCCCCcHHH-HhccCCCcHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCHHHHHH-HHHH
Confidence 558888888887643 343 3478999999999999866667899999999999999986 11111 1223
Q ss_pred CCCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHcc
Q 003142 116 LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQ 195 (844)
Q Consensus 116 ~~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~i~~ 195 (844)
+.++. |+.+.+.|+..| ..++.++..+..+|..+..++..+... .-+.|..+...+..+.++.+.|.+
T Consensus 341 L~~i~--Dlerll~ri~~~-~~~~~dl~~l~~~l~~~~~l~~~l~~~---------~~~~l~~l~~~l~~~~~l~~~i~~ 408 (854)
T PRK05399 341 LKGVY--DLERLLSRIALG-RANPRDLAALRDSLEALPELKELLAEL---------DSPLLAELAEQLDPLEELADLLER 408 (854)
T ss_pred HhcCC--CHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHhc---------CcHHHHHHHhhcccHHHHHHHHHH
Confidence 66665 588889888765 589999999999999999887665321 123466666777788888899999
Q ss_pred ccCc--------CCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccEEeeCCE---EEEEecCCcc-cc
Q 003142 196 VVDE--------DGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGR---LCIRTGADQL-SF 263 (844)
Q Consensus 196 ~id~--------~G~v~D~AS~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~r~gr---~vi~v~~~~~-~~ 263 (844)
+||+ +|.|+|++|++|+.+|+..+.+++.+.+..+++.... ....+.++.++ |+|+|+..+. .+
T Consensus 409 ~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~----~~~~l~~~~~~~~gy~iev~~~~~~~v 484 (854)
T PRK05399 409 AIVEEPPLLIRDGGVIADGYDAELDELRALSDNGKDWLAELEARERERT----GISSLKVGYNKVFGYYIEVTKANLDKV 484 (854)
T ss_pred HHccCCchhcccCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCceEEEEcCceeEEEEEEcchhhhC
Confidence 8886 5789999999999999999998888888777765432 22234444444 9999999988 88
Q ss_pred cc-EEee-cccCCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003142 264 KG-LLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341 (844)
Q Consensus 264 ~g-iv~~-S~sG~t~~iEP~~~v~lnn~l~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a~~a~~ 341 (844)
|+ +++. |.+|.+.|++|. ++++|+++.++..++.+++.+|+++|...+..+.+.|..+.+++++||+++|+|.+|..
T Consensus 485 p~~~~~~~s~~~~~rf~t~~-l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~~~~~l~~~~~~la~lD~l~s~A~~a~~ 563 (854)
T PRK05399 485 PEDYIRRQTLKNAERYITPE-LKELEDKILSAEEKALALEYELFEELREEVAEHIERLQKLAKALAELDVLASLAEVAEE 563 (854)
T ss_pred ChhhhheeeccCeEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 7776 889999999995 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeCCcccccccCCCCcccccCCccccceEEecCCcchHHHHHhHHhhHHHHHhhHHhHHHHHHhhhcCCCccc
Q 003142 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAAR 421 (844)
Q Consensus 342 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~rHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (844)
++||+|.|+. +..+.++++|||+++...
T Consensus 564 ~~~~~P~~~~----------------------~~~l~i~~~rHP~le~~~------------------------------ 591 (854)
T PRK05399 564 NNYVRPEFTD----------------------DPGIDIEEGRHPVVEQVL------------------------------ 591 (854)
T ss_pred CCccccEEeC----------------------CCCEEEEeccCcEEeccc------------------------------
Confidence 9999999973 235999999999985310
Q ss_pred CCCccCCCCCchhhhhhccCCccceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHH
Q 003142 422 KGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS 501 (844)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~ 501 (844)
.++.+||||+.++.++++++|||||+|||||+||++|++.+|+|+|+|||+ ..+.+++++.
T Consensus 592 ------------------~~~~~vpnd~~l~~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa-~~a~i~~~d~ 652 (854)
T PRK05399 592 ------------------GGEPFVPNDCDLDEERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSFVPA-ESARIGIVDR 652 (854)
T ss_pred ------------------CCCceEecceeeCCCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCceec-cceEecccCe
Confidence 135689999999988899999999999999999999999999999999999 6799999999
Q ss_pred HhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEccchh
Q 003142 502 VFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG-SLLTIATTHHGE 580 (844)
Q Consensus 502 i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g-~t~vIitTHd~e 580 (844)
+|+++|..|++..+.|||+.+|.++..|+..+++++|+||||||+||++.+|.++++++++++.+.+ ++ +|++||+++
T Consensus 653 I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~-~l~aTH~~e 731 (854)
T PRK05399 653 IFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAK-TLFATHYHE 731 (854)
T ss_pred eeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCce-EEEEechHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999874 65 999999999
Q ss_pred HHhhhccccceeeeEEEEec--ccceeeEEeecCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Q 003142 581 LKTLKYSNDFFENACMEFDE--VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642 (844)
Q Consensus 581 l~~~a~~~~~v~ng~v~fd~--~~l~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~l~~ 642 (844)
+..++++...+.|.+|.++. +++.|+|++..|++++|||+++|++.|+|++|+++|+.++..
T Consensus 732 l~~l~~~~~~v~n~~m~~~~~~~~l~flYkl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~ 795 (854)
T PRK05399 732 LTELEEKLPGVKNVHVAVKEHGGDIVFLHKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQ 795 (854)
T ss_pred HHHHhhhcCCeEEEEEEEEEeCCeEEEEEEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999876 679999999999999999999999999999999999987644
No 6
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.9e-52 Score=496.57 Aligned_cols=512 Identities=22% Similarity=0.275 Sum_probs=415.8
Q ss_pred hhhhHhhhhhcChHH---------HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHc-CCCCCCC
Q 003142 47 SRVVYESLRVLEWDK---------LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKH-GSCSLDL 116 (844)
Q Consensus 47 ~~m~~~~l~~Le~~~---------i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~~-~~~~~~~ 116 (844)
+.|+..|++-||.-. =+=++-.+|.|++|.+.++.|+-.|..+.++++.+|+-+.++...... ......+
T Consensus 260 m~lD~~t~~nLEl~~~~~~~~~~gSL~~~ld~t~T~mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~~~~l~~~L~~~L 339 (843)
T COG0249 260 MVLDAATRRNLELFSNLRGNGKKGSLFWLLDRTVTPMGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNPELREKLREML 339 (843)
T ss_pred EEEcHHHHhcccccccCCCCCCCCcHHHHhccCCCchhHHHHHHHhhCcccCHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 447788887777432 234566999999999999999777789999999999999888874210 0011236
Q ss_pred CCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHccc
Q 003142 117 TGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQV 196 (844)
Q Consensus 117 ~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~i~~~ 196 (844)
..+. |+.+.+.|...| .-++.++..++..+.....+...+...... +.+..+...+..+..+.++...+..+
T Consensus 340 ~~v~--DleRl~~Rl~~~-~~~~rDl~~l~~~l~~~~~i~~~l~~~~~~-----~~l~~~~~~i~~~~~~~e~~~ll~~~ 411 (843)
T COG0249 340 KKVP--DLERLLSRLSLG-RASPRDLLRLRDSLEKIPEIFKLLSSLKSE-----SDLLLLLEDIESLDYLAELLELLETA 411 (843)
T ss_pred hcCc--CHHHHHHHHHcC-CCChhhHHHHHHHHHHHHHHHHHHhccccc-----hhhhHHhhhhhccccHHHHHHHHHHH
Confidence 6665 588888888766 589999999999999999887665432110 01111211111222233455555555
Q ss_pred cCcC-------CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-cEEeeCCEEEEEecCCcc-cccc-E
Q 003142 197 VDED-------GSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFL-EVSSIHGRLCIRTGADQL-SFKG-L 266 (844)
Q Consensus 197 id~~-------G~v~D~AS~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~t~r~gr~vi~v~~~~~-~~~g-i 266 (844)
|.++ |-|+++.+++|+.+|......++-+.+.... .+.......+. .+....|+ +|-|+..+. .+|. .
T Consensus 412 i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i~~le~~-~r~~~gi~slki~~n~v~Gy-~ievt~~~~~~~p~~~ 489 (843)
T COG0249 412 INEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAKLELE-ERERTGIKSLKIKYNKVYGY-YIEVTKSNAKLVPDDY 489 (843)
T ss_pred hhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCchhhhhhhcccee-EEEechhccccCchHH
Confidence 5544 6799999999999999999766555555444 22211111111 24444565 777777766 7775 4
Q ss_pred Eee-cccCCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 003142 267 LLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGT 345 (844)
Q Consensus 267 v~~-S~sG~t~~iEP~~~v~lnn~l~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~~ 345 (844)
++. +.+++..|.+| ++.+++.++..++......+++++.++.+.+..|.+.|+.+...+++||++.++|..|...+||
T Consensus 490 ir~qt~kn~~rf~t~-el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~lD~l~slA~~a~~~~y~ 568 (843)
T COG0249 490 IRRQTLKNAERFTTP-ELKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAELDVLSSLAEIAAEQNYV 568 (843)
T ss_pred HHHHHHhcceEecCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 554 77778889888 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeCCcccccccCCCCcccccCCccccceEEecCCcchHHHHHhHHhhHHHHHhhHHhHHHHHHhhhcCCCcccCCCc
Q 003142 346 SPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEK 425 (844)
Q Consensus 346 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~rHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (844)
+|+|++ +..+.++++|||+++...
T Consensus 569 rP~~~~----------------------~~~l~i~~gRHPvvE~~~---------------------------------- 592 (843)
T COG0249 569 RPEFVD----------------------SNDLEIKEGRHPVVEAVL---------------------------------- 592 (843)
T ss_pred CceecC----------------------CCCEEEEecCcchhhhhc----------------------------------
Confidence 999983 223999999999996421
Q ss_pred cCCCCCchhhhhhccCCccceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhh
Q 003142 426 DTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFAD 505 (844)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ 505 (844)
+ ..+||||+.++..+++++|||||+|||||+||++|++.+|+|+|+|||| ....++++|++|++
T Consensus 593 --------------~-~~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA-~~A~i~ivD~IfTR 656 (843)
T COG0249 593 --------------D-NGFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPA-EKARIGIVDRIFTR 656 (843)
T ss_pred --------------c-CCcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeH-HHccccccceeeec
Confidence 1 2299999999988899999999999999999999999999999999999 89999999999999
Q ss_pred CCchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhh
Q 003142 506 IGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTL 584 (844)
Q Consensus 506 ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~~~ 584 (844)
+|..+++..+.|||..+|.+++.|+..+++.+|+||||.|.||...+|.+++++++++|.++ ++. +|++|||+++..+
T Consensus 657 iGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~eyL~~~~~~~-tLFATHy~ELt~l 735 (843)
T COG0249 657 IGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCR-TLFATHYHELTEL 735 (843)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHHHHHhccCce-EEEeccHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999996 775 9999999999999
Q ss_pred hccccceeeeEEEEe--cccceeeEEeecCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Q 003142 585 KYSNDFFENACMEFD--EVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642 (844)
Q Consensus 585 a~~~~~v~ng~v~fd--~~~l~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~l~~ 642 (844)
......+.|.+|... .+.....|++..|..++|||+++|+..|+|.+|++||+.++.+
T Consensus 736 ~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~SyGi~VAklaGlP~~Vi~rA~~il~~ 795 (843)
T COG0249 736 EEKLPQVKNYHMSAVEEGGDITFLYKVKPGIADKSYGIHVAKLAGLPEEVIERAREILAE 795 (843)
T ss_pred hhcccccceeEEEEEEcCCceEEEEEeccCCCCccHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999889999998654 3456788999999999999999999999999999999987743
No 7
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=6.2e-44 Score=400.98 Aligned_cols=518 Identities=20% Similarity=0.229 Sum_probs=383.2
Q ss_pred hhhhHhhhhhcChHH---------HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 003142 47 SRVVYESLRVLEWDK---------LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLDLT 117 (844)
Q Consensus 47 ~~m~~~~l~~Le~~~---------i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~~~~~~~~~~ 117 (844)
|.++..||+.||.-. =+=++-.++.|..|.+.++.|+..|.-|...+.++|+-+.|..... ..+.-|+
T Consensus 458 Mtls~ntLq~Leif~nqtd~~~kGSLfwvldhT~TsfG~RmLr~WvtkPLvd~~~I~eRLDAVeeitshs---snS~vf~ 534 (1070)
T KOG0218|consen 458 MTLSPNTLQSLEIFTNQTDGSEKGSLFWVLDHTRTSFGLRMLREWVTKPLVDVHQIEERLDAVEEITSHS---SNSIVFE 534 (1070)
T ss_pred eeechhhhhceeeeeecCCCCcccceEEEeccchhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcc---cchHHHH
Confidence 346677777776421 1224668999999999999997666789999999999988873211 1111111
Q ss_pred CC-----CchhHHHHHHhcccCCCCCHHHHHHHHHHHHHH-HHHH---HHHHHHHhhhhhhhcccccHHHHHHhc-----
Q 003142 118 GV-----DLSLVKSAIREVRRASPLRPNEALAVVALLQFS-ETLQ---LSLRAAIKEDADLYIRFMPLTQMIMQL----- 183 (844)
Q Consensus 118 ~i-----~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~-~~lk---~~l~~~~~~~~~~~~~~~~L~~l~~~l----- 183 (844)
.| +..|+.+.+.|+--|.+-+++|+..+...+..+ ..++ -++..+..........-|.|..++..+
T Consensus 535 si~~~l~rlpDl~rgL~rIy~~tCtp~~eff~vlk~iy~a~s~fq~~~~~~~~~~~s~~~s~~qS~LLrrlisel~~p~~ 614 (1070)
T KOG0218|consen 535 SINQMLNRLPDLLRGLNRIYYGTCTPRKEFFFVLKQIYSAVSHFQMHQSYLEHFKSSDGRSGKQSPLLRRLISELNEPLS 614 (1070)
T ss_pred HHHHHHHhCcHhHhhHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchhccHHHHHHHHHhcCccc
Confidence 11 111455666666556554548887776655433 2222 111111000000001123455555554
Q ss_pred -ccchHHHHHHccccCcCC----ccCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccEEeeCCE
Q 003142 184 -FVNRSLIKSIMQVVDEDG----SIKDS-------ASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGR 251 (844)
Q Consensus 184 -~~~~~l~~~i~~~id~~G----~v~D~-------AS~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~r~gr 251 (844)
.+.+++...++..--..| .++|. -+..+..+-++++....++...|.++. ++-....++..+..+-.
T Consensus 615 ~s~~~hfL~mln~~aa~~gnk~d~fkd~snfpl~~e~~di~~virE~~ms~~~~~~hLaeiR-k~Lk~pnlef~~vsgv~ 693 (1070)
T KOG0218|consen 615 TSQLPHFLTMLNVSAAMEGNKDDQFKDFSNFPLYDESEDIIKVIRESEMSRSQLKEHLAEIR-KYLKRPNLEFRQVSGVD 693 (1070)
T ss_pred cccHHHHHHHhhHHHHhhCChHHhhhhhccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCceeEEecCee
Confidence 133444444443222222 12222 123344444555555556666777754 33333455566777889
Q ss_pred EEEEecCCcc-cccc-EEeecccCC-eEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 003142 252 LCIRTGADQL-SFKG-LLLSSSSGI-GSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQ 328 (844)
Q Consensus 252 ~vi~v~~~~~-~~~g-iv~~S~sG~-t~~iEP~~~v~lnn~l~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~ 328 (844)
|||.|+...- ++|- +|.-++|.. ..|..| .++.+-.+|..++...-.+.+..++.+..++..|+.++.++...++.
T Consensus 694 flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP-~iq~~l~eL~~~~e~L~i~sea~~~sFL~kiSehYtelrkat~~Lat 772 (1070)
T KOG0218|consen 694 FLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTP-RIQKLLQELEYYKELLIIESEAQYKSFLNKISEHYTELRKATLNLAT 772 (1070)
T ss_pred EEEEecccccccCCccceeeccceeeeecCCH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996554 5554 344344554 466666 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCceeeCCcccccccCCCCcccccCCccccceEEecCCcchHHHHHhHHhhHHHHHhhHHhHHH
Q 003142 329 LDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTE 408 (844)
Q Consensus 329 lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~rHPlL~~~~~~~~~~~~~~~~~~~~~ 408 (844)
+||+++.|+.|...|||||+|+++ ...|.++++|||.++.-.
T Consensus 773 lDCi~SlA~~s~n~nYvRPtfvd~---------------------~~eI~ikngRhPvIe~Ll----------------- 814 (1070)
T KOG0218|consen 773 LDCILSLAATSCNVNYVRPTFVDG---------------------QQEIIIKNGRHPVIESLL----------------- 814 (1070)
T ss_pred HHHHHHHHHHhccCCccCcccccc---------------------hhhhhhhcCCCchHHHHh-----------------
Confidence 999999999999999999999852 245999999999996321
Q ss_pred HHHhhhcCCCcccCCCccCCCCCchhhhhhccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccc
Q 003142 409 LRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH 487 (844)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~ 487 (844)
++.+||||+.++ +++++.+|||||+||||.++|.++++.+|+|.|+|
T Consensus 815 --------------------------------~d~fVPNdi~ls~egerc~IITGPNMGGKSsyIrQvALitIMAQiGsf 862 (1070)
T KOG0218|consen 815 --------------------------------VDYFVPNDIMLSPEGERCNIITGPNMGGKSSYIRQVALITIMAQIGSF 862 (1070)
T ss_pred --------------------------------hhccCCCcceecCCCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCc
Confidence 346899999999 78899999999999999999999999999999999
Q ss_pred cccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 003142 488 ILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567 (844)
Q Consensus 488 vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~ 567 (844)
+|+ +...+++|+.+|.++|..+++..+.|||..+|.....++..++..+++||||.|.||...+|.+++.+.++++.+.
T Consensus 863 VPA-eea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElGRGTsThDGiAIsYAtL~yf~~~ 941 (1070)
T KOG0218|consen 863 VPA-EEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELGRGTSTHDGIAISYATLKYFSEL 941 (1070)
T ss_pred cch-HHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhcCCCccccchhHHHHHHHHHHHh
Confidence 999 8899999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCeEEEEEccchhHHhhhcccc-ceeeeEEEE---------ecccceeeEEeecCCCCCchHHHHHHHcCCCHHHHHHHH
Q 003142 568 GSLLTIATTHHGELKTLKYSND-FFENACMEF---------DEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNAR 637 (844)
Q Consensus 568 g~t~vIitTHd~el~~~a~~~~-~v~ng~v~f---------d~~~l~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~ 637 (844)
..+.+++|||++.+..+....+ .+.|.+|.| |.....+.|+|..|...+||++++|+..++|.+++.||-
T Consensus 942 ~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~sedk~~~d~dsVtfLYklvrGlasrSyGlnVAklA~ip~sii~rA~ 1021 (1070)
T KOG0218|consen 942 SKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLESEDKTGEDWDSVTFLYKLVRGLASRSYGLNVAKLARIPKSIINRAF 1021 (1070)
T ss_pred hceeEEeeecCcchhhhhcCCCccccceeeeeeeeccccCCCchhhhhHHHHhhhhhhccccccHHHHhCCCHHHHHHHH
Confidence 5556999999998887655432 355666654 223455679999999999999999999999999999998
Q ss_pred HHH
Q 003142 638 QLY 640 (844)
Q Consensus 638 ~~l 640 (844)
.+-
T Consensus 1022 siS 1024 (1070)
T KOG0218|consen 1022 SIS 1024 (1070)
T ss_pred HHH
Confidence 754
No 8
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=7.1e-39 Score=373.62 Aligned_cols=522 Identities=19% Similarity=0.213 Sum_probs=403.6
Q ss_pred hhHhhhhhcCh---------HHHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHH--HH-cCCCCCCC
Q 003142 49 VVYESLRVLEW---------DKLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM--QK-HGSCSLDL 116 (844)
Q Consensus 49 m~~~~l~~Le~---------~~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~--~~-~~~~~~~~ 116 (844)
++-.||+-||. ..-+-.+-.+|+|+.||+++..|+-.|..+.+.|+++++-+.-.... .. ..+ -.|
T Consensus 540 lD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpfGKRllk~Wl~~Pl~~~~~I~~R~dav~~l~~~~~~~~~~~--e~l 617 (1125)
T KOG0217|consen 540 LDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPFGKRLLKTWLMAPLCDKEDIKQRQDAVDSLGKAPMDRTKVG--ETL 617 (1125)
T ss_pred ecchhhhhhhhhccCCCCCCchhHHHHHhhccChHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHhcCchhHHHHH--HHH
Confidence 55566666653 23344556999999999999998776678889999998876555441 00 000 013
Q ss_pred CCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHccc
Q 003142 117 TGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQV 196 (844)
Q Consensus 117 ~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~i~~~ 196 (844)
.-+. |+++.|.|...++.=..+.+.+..+.|.+.+.+-..+.......... .....|..++.+++....-...-...
T Consensus 618 ~klP--DlERlL~Rih~~~~~~~k~i~~f~rvLegfk~~~~~~~~~~~v~~~~-~~~~~is~~~~~~p~~~~~i~~~~~a 694 (1125)
T KOG0217|consen 618 KKLP--DLERLLVRIHNGGEKNKKKIADFIRVLEGFKEINKLLGSLINVLKEG-EGLRLISELLESMPNLSEEIENWTEA 694 (1125)
T ss_pred hhCC--cHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcCcchhhHHHHHHHHH
Confidence 3343 57888999887776678888888888888887765543332111100 00112333333322222222222233
Q ss_pred cCc-----CCccC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccEEeeCCEEEEEecCCcc-ccc--cE
Q 003142 197 VDE-----DGSIK--DSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFK--GL 266 (844)
Q Consensus 197 id~-----~G~v~--D~AS~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~r~gr~vi~v~~~~~-~~~--gi 266 (844)
+|. +|.|. -+++.+++..-..++.+++.+...|+.+-.+.. ......+++--..|.+.|+.+.. +++ .+
T Consensus 695 f~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk~l~-c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~ 773 (1125)
T KOG0217|consen 695 FDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRKRLG-CSSIVFVDVGKDVYQLEVPENGGVPSSLRYE 773 (1125)
T ss_pred HHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHHhcC-CCceeEeecCceEEEEecCcccCCCCchHHH
Confidence 443 56553 467899999999999999999988888765443 23344677888899999999988 777 55
Q ss_pred EeecccCCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Q 003142 267 LLSSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGG-- 344 (844)
Q Consensus 267 v~~S~sG~t~~iEP~~~v~lnn~l~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~-- 344 (844)
..++..|...|+.| ++-.+-..+.+++........++.++|...+.++...++.++..++.|||+++.|.+|..+++
T Consensus 774 ~~S~~Kg~~RY~tp-~~~kli~~l~~aee~~~~~~~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~ 852 (1125)
T KOG0217|consen 774 LMSAKKGVSRYYTP-DLRKLIAHLDEAEERKKSSLSDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPM 852 (1125)
T ss_pred HHHhhcCcccccCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Confidence 55688899999999 666677777777777777777899999999999999999999999999999999999998875
Q ss_pred CCceeeCCcccccccCCCCcccccCCccccceEEecCCcchHHHHHhHHhhHHHHHhhHHhHHHHHHhhhcCCCcccCCC
Q 003142 345 TSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGE 424 (844)
Q Consensus 345 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~rHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (844)
|+|.++.+.+ +.+.+.+.+.|||.+....
T Consensus 853 Crp~i~~~~d------------------t~~~l~~~~~~Hpcfsl~s--------------------------------- 881 (1125)
T KOG0217|consen 853 CRPEIVESTD------------------TPGFLIVKGLRHPCFSLPS--------------------------------- 881 (1125)
T ss_pred ccceeecccC------------------CCceeEEecccCceeecCc---------------------------------
Confidence 9999985321 1236899999999984311
Q ss_pred ccCCCCCchhhhhhccCCccceeEEEEe--cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHH
Q 003142 425 KDTNLSPSEMQVSALELAHPVPIDIFIA--RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSV 502 (844)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~V~~disl~--~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i 502 (844)
.++.++||++.++ ....+.++||||++|||||||.++...+|+|.|++||+ ....++.++.+
T Consensus 882 ---------------~~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa-~~~~~tpidrI 945 (1125)
T KOG0217|consen 882 ---------------TGTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPA-EVMELTPIDRI 945 (1125)
T ss_pred ---------------CCCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccH-HHhcccchHHH
Confidence 2356899999999 44555569999999999999999999999999999999 78889999999
Q ss_pred hhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003142 503 FADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582 (844)
Q Consensus 503 ~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~ 582 (844)
|+++|..+.+..+-|||.-++..-..|+..++..+||++||.++||-..+|.+|+.+++++|...-.+..+++|||+.+.
T Consensus 946 ~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~ 1025 (1125)
T KOG0217|consen 946 FTRLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLC 1025 (1125)
T ss_pred hhhcccccchhcCCceEEEeccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999985333589999999999
Q ss_pred hhhccccceeeeEEE--Eeccc-ceeeEEeecCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 003142 583 TLKYSNDFFENACME--FDEVK-LKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGAAS 644 (844)
Q Consensus 583 ~~a~~~~~v~ng~v~--fd~~~-l~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~l~~~~ 644 (844)
..-.+++.+..++|. .|.+. ....|++..|.+|+||++++|+..|+|..|+++|.....+-.
T Consensus 1026 ~~~~~~p~Vrl~~Ma~~vd~e~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e 1090 (1125)
T KOG0217|consen 1026 VDFMHHPQVRLLHMACVVDEEIDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELE 1090 (1125)
T ss_pred HhhhcCccccchhheeeecCCccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 877777778777774 35555 778899999999999999999999999999999987654433
No 9
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.9e-38 Score=361.11 Aligned_cols=530 Identities=21% Similarity=0.258 Sum_probs=395.6
Q ss_pred ccceeeeccCc--cccceeccccccC----CchhhhhhhHhhhhhcChHHHHHH-HHhhcCCHHHHHHHhccCCCCCCCH
Q 003142 18 TKSFAITNKNR--RGRLFCSTVAVSD----SDDKKSRVVYESLRVLEWDKLCHS-VSSFARTSLGREATLTQLWSINQTY 90 (844)
Q Consensus 18 ~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~m~~~~l~~Le~~~i~~~-l~~~~~t~~Gk~~~~~l~p~~~~~~ 90 (844)
+..|-|+|-+- -+++-..+|.+.. |... ++-.+.+.. +-.+|.|.+|.+++..|...|..+.
T Consensus 274 s~~~ei~~~~~~~~m~ld~~av~alnlf~~~~~~-----------~~~s~~L~~~~LN~c~t~~G~rll~~w~~qpL~~~ 342 (902)
T KOG0219|consen 274 SGKYELTNHGLHQFMRLDSAAVRALNLFPLPYNN-----------PEKSNNLALSLLNHCKTLQGERLLRQWLKQPLRDI 342 (902)
T ss_pred cceEEEeecchHHHhhHHHHHHHHHhhcCCCCCC-----------ccccchhhHHHHhhcccccchhhhhhhhhcchHHH
Confidence 34566776543 4566667776653 2222 333334444 7799999999999999876666778
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-CCCC-CCCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---Hhh
Q 003142 91 QDSLRLLDETNAAIEMQKHGS-CSLD-LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAA---IKE 165 (844)
Q Consensus 91 ~~~~~~l~et~ea~~~~~~~~-~~~~-~~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~---~~~ 165 (844)
..+.++++-+.+.++...-.. ..-+ +..+. |+.....+.- ..-|.++..+++.+.+|..-...+ ...
T Consensus 343 ~ri~~r~d~v~~l~~~~~~rq~L~~~lL~~~p--di~rl~~~l~------~~~L~d~~r~yq~~~~l~~~~~~l~~~~~~ 414 (902)
T KOG0219|consen 343 DRINERHDLVEALVEDAEIRQKLRDDLLRRIP--DISRLARRLM------KANLQDVNRIYQAAKLLPTVVQVLISLSES 414 (902)
T ss_pred HHHHHHhhhHHHHHhhhHHHHHHHHHHhhcCh--hHHHhhhhhh------hcchHHHHHHHHHHHHhHHHHHHHHhhhhh
Confidence 888888887766554321000 0000 22222 2333344332 333446666666666655432222 111
Q ss_pred hhhhhcccccHHHHHHhcccchHHHHHHccccCcC----C--ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 003142 166 DADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDED----G--SIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNE 239 (844)
Q Consensus 166 ~~~~~~~~~~L~~l~~~l~~~~~l~~~i~~~id~~----G--~v~D~AS~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~ 239 (844)
.... -..+|.+... .+..+...+...+|.+ + .|+.+.+|+|..||+.+..++..+.+.-.+.-.+..-.
T Consensus 415 ~~~l--l~~~l~~~~~---~~~kf~~~ve~t~D~da~ee~ey~VR~eFdeeL~eLrq~LdeL~~~m~~~hkrv~~dl~~D 489 (902)
T KOG0219|consen 415 HNRL--LKSPLTEHLK---KLEKFQEMVETTVDLDAEEENEYRVRVDFDEELQELREKLDELERKMEKLHKKVSADLGLD 489 (902)
T ss_pred hhhh--hhhhhhhhhh---hHHHHHHHHHHHhhHhHHhcCcEEEecccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 1111 0113433333 3445666666666643 3 48999999999999999999999988887766554322
Q ss_pred c--ccc-cEEeeCCEEEEEecCCcc--c-cccEEeecccCCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003142 240 S--LFL-EVSSIHGRLCIRTGADQL--S-FKGLLLSSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQ 313 (844)
Q Consensus 240 ~--~~~-~~t~r~gr~vi~v~~~~~--~-~~giv~~S~sG~t~~iEP~~~v~lnn~l~~~~~~~~~e~~~il~~L~~~v~ 313 (844)
. ++- +-+--.|.|.=..+.+.+ + -++...-|...+.||+....+-.|||+....+-+++..+..|.+++.....
T Consensus 490 ~~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~GV~FTtk~L~slN~e~~~~qk~Y~~~Q~~ivrevikia~ 569 (902)
T KOG0219|consen 490 PKKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKGGVKFTTKKLSSLNDEFMSLQKEYDEAQNEIVREIIKIAA 569 (902)
T ss_pred cccceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeCcEEEEhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 110 111122332222233333 2 334444466667999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCceeeCCcccccccCCCCcccccCCccccceEEecCCcchHHHHHh
Q 003142 314 VDLDEIEKMLNGIIQLDVVNARATYSL--SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQH 391 (844)
Q Consensus 314 ~~~~~l~~~~~~l~~lD~~~a~a~~a~--~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~rHPlL~~~~ 391 (844)
.|.+.|..+-+.+|+||++.++|..|. -..|++|.+... +...+.+++.|||+|+.+
T Consensus 570 tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~--------------------gs~rl~l~~~rHp~lE~Q- 628 (902)
T KOG0219|consen 570 TYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPL--------------------GSKRLELKQSRHPVLEGQ- 628 (902)
T ss_pred hcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCcccccc--------------------chhHHHHHhcccchhhcc-
Confidence 999999999999999999999999988 668999999731 123689999999999632
Q ss_pred HHhhHHHHHhhHHhHHHHHHhhhcCCCcccCCCccCCCCCchhhhhhccCCccceeEEEEe-cCceEEEEEccCCCCchh
Q 003142 392 KQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTI 470 (844)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTT 470 (844)
+.-.++||++.+. .++++.+|||||++||||
T Consensus 629 ------------------------------------------------d~~~fIpNdv~le~~~~~~~IiTGpNMGGKST 660 (902)
T KOG0219|consen 629 ------------------------------------------------DEIPFIPNDVVLEKGKCRMLIITGPNMGGKST 660 (902)
T ss_pred ------------------------------------------------ccCCCCCCccccccCCceEEEEeCCCcCccch
Confidence 1245899999999 788999999999999999
Q ss_pred hHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 471 CLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 471 LLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
.+|+.|.+.+|+|.|+++|+ +...+++.+.++.+.|..++..++.|||+.+|-..+.|+..+++.+|+++|||++||..
T Consensus 661 yir~~Gvi~lmAQIGcfVPc-e~A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt 739 (902)
T KOG0219|consen 661 YIRQVGVIVLMAQIGCFVPC-ESATISIVDGILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDELGRGTST 739 (902)
T ss_pred hhhhhhHHHHHHHhCCceeh-hhcCCchhhHHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCcee
Confidence 99999999999999999999 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe--cccceeeEEeecCCCCCchHHHHHHHcCC
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD--EVKLKPTYKILWGVPGRSSAINIAERLGL 628 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd--~~~l~p~y~l~~G~~g~S~a~~iA~~~gl 628 (844)
.+|..+++++-+++..+-+|..|++||++++..++.....+.|-+|... .+...-.|++..|+.+.|+++.+|+..|+
T Consensus 740 ~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~~~~vKn~h~~a~i~~~~~~llY~V~~Gv~d~SFGi~VA~~a~f 819 (902)
T KOG0219|consen 740 YDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQLPTVKNLHVTAQIENDDITLLYKVFEGVCDQSFGIHVAELVGF 819 (902)
T ss_pred ccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhhhhhhhhheeeeEecCcchhhHHHHhcccccCcchhhHHHHcCC
Confidence 9999999999999987643348999999999999999999988777543 34445569999999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q 003142 629 PGIVVQNARQLYG 641 (844)
Q Consensus 629 ~~~ii~~A~~~l~ 641 (844)
|+.+++-|+....
T Consensus 820 p~~vie~A~~~~~ 832 (902)
T KOG0219|consen 820 PEHVIEMAKQKAE 832 (902)
T ss_pred ChHHHHHHHHHHH
Confidence 9999999987664
No 10
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=8.7e-39 Score=336.93 Aligned_cols=200 Identities=40% Similarity=0.633 Sum_probs=169.7
Q ss_pred CCccceeEEEEecCc-eEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhh
Q 003142 441 LAHPVPIDIFIARKT-RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF 519 (844)
Q Consensus 441 ~~~~V~~disl~~~g-~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstf 519 (844)
++++|+||+.++.+. ++++|||||+|||||+||+||.+.+|+|+|+++|+ ....+++|+.++..++..+++..+.|+|
T Consensus 28 ~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA-~~~~i~~~d~I~t~~~~~d~~~~~~S~F 106 (235)
T PF00488_consen 28 NKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPA-ESAEIPIFDRIFTRIGDDDSIESGLSTF 106 (235)
T ss_dssp TSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSS-SEEEEE--SEEEEEES---SSTTSSSHH
T ss_pred CCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeee-cccccccccEEEeecccccccccccccH
Confidence 467999999999655 89999999999999999999999999999999999 7789999999999999999999999999
Q ss_pred hHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 520 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 520 S~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
..+|+++..++..+++.+|+|+||++.||+|.+|.+++.+++++|.++ ++. +|++||+.++..+......+.+.+|.+
T Consensus 107 ~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~-~i~~TH~~~l~~~~~~~~~v~~~~~~~ 185 (235)
T PF00488_consen 107 MAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCF-VIIATHFHELAELLERNPNVQNYHMEV 185 (235)
T ss_dssp HHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-E-EEEEES-GGGGGHHHHSTTEEEEEEEE
T ss_pred HHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhcccc-EEEEeccchhHHHhhhCccccccceee
Confidence 999999999999999999999999999999999999999999999984 775 999999999998877777888888887
Q ss_pred ec--ccceeeEEeecCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Q 003142 599 DE--VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642 (844)
Q Consensus 599 d~--~~l~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~l~~ 642 (844)
+. ..+.++|++..|.++.|||+.+|+.+|+|++++++|++++..
T Consensus 186 ~~~~~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA~~i~~~ 231 (235)
T PF00488_consen 186 EEDNDSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERAKEILKQ 231 (235)
T ss_dssp EEETTEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred eeeccccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 54 667889999999999999999999999999999999987743
No 11
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=2.2e-37 Score=322.43 Aligned_cols=193 Identities=32% Similarity=0.474 Sum_probs=181.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS 520 (844)
+++|++|++++ .++++++|+||||+||||+|++++++.+|+|+|+++|+ ....+++++.+|.+++..+++..+.|+|+
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa-~~~~i~~~~~i~~~~~~~d~~~~~~StF~ 94 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPA-KSMRLSLVDRIFTRIGARDDIMKGESTFM 94 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCc-cccEeccccEEEEecCcccccccCcchHH
Confidence 56999999999 66899999999999999999999999999999999999 67899999999999999999999999999
Q ss_pred HHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 521 ~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
.+|+++..++..+++|+|+|||||++||||.++.+++.+++++|.+. +++ +|++||++++.........+.+++|.++
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~-~i~~TH~~el~~~~~~~~~v~~~~m~~~ 173 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCL-TLFSTHYHSLCDEFHEHGGVRLGHMACA 173 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCc-EEEEeccHHHHHHhhcCcceEEEEEEEE
Confidence 99999999999999999999999999999999999999999999886 786 9999999999987767778999999875
Q ss_pred c--------ccceeeEEeecCCCCCchHHHHHHHcCCCHHHHHHH
Q 003142 600 E--------VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 636 (844)
Q Consensus 600 ~--------~~l~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A 636 (844)
. +++.|+|++..|+++.|||+.+|++.|+|++++++|
T Consensus 174 ~~~~~~~~~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 174 VKNESDPTIRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred EeccccCCCCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 3 578999999999999999999999999999999986
No 12
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=7.9e-37 Score=319.66 Aligned_cols=198 Identities=29% Similarity=0.452 Sum_probs=183.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS 520 (844)
.++|++|++++ .++++++|+|||||||||+||+||.+.+|+|.|+|+|+ ....++.++.++..++..+++..++|+|+
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa-~~~~~~~~~~il~~~~l~d~~~~~lS~~~ 94 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPC-DSADIPIVDCILARVGASDSQLKGVSTFM 94 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCc-ccEEEeccceeEeeeccccchhcCcChHH
Confidence 56899999999 58899999999999999999999999999999999999 67889999999999999999999999999
Q ss_pred HHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 521 ~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
.++.++..++..+++|+|||||||++||++.++.++.+.+++.+.+ .|++ +|++||+.++..+|++...+.+|+|.++
T Consensus 95 ~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~-vlisTH~~el~~~~~~~~~i~~g~~~~~ 173 (222)
T cd03285 95 AEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCF-CLFATHFHELTALADEVPNVKNLHVTAL 173 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCe-EEEEechHHHHHHhhcCCCeEEEEEEEE
Confidence 9999999999888999999999999999999999998888888875 4776 9999999999999999999999999876
Q ss_pred c----ccceeeEEeecCCCCCchHHHHHHHcCCCHHHHHHHHHHHH
Q 003142 600 E----VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYG 641 (844)
Q Consensus 600 ~----~~l~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~l~ 641 (844)
. +.+.|+|++..|+++.|||+++|++.|+|++++++|+++..
T Consensus 174 ~~~~~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~ 219 (222)
T cd03285 174 TDDASRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKAL 219 (222)
T ss_pred EeCCCCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 5 67889999999999999999999999999999999998754
No 13
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=8.7e-35 Score=323.71 Aligned_cols=536 Identities=21% Similarity=0.227 Sum_probs=394.0
Q ss_pred ccceecccccceeeeccCccccceeccccccC--CchhhhhhhHhhhhhcChHHHHHHHHhhcCCHHHHHHHhccCCCCC
Q 003142 10 SISIPIFNTKSFAITNKNRRGRLFCSTVAVSD--SDDKKSRVVYESLRVLEWDKLCHSVSSFARTSLGREATLTQLWSIN 87 (844)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~m~~~~l~~Le~~~i~~~l~~~~~t~~Gk~~~~~l~p~~~ 87 (844)
+++.||..-|.|.++|---- =--|..+-+ |+.++-+-++.++. ||-.+-+ |-..|+|..|++.++.|..-|.
T Consensus 220 ~v~~pI~gik~f~l~~lv~i---D~nTisaL~Ifp~e~~~~~~k~~~~--~g~Slf~-l~n~c~s~~g~k~Lr~Wf~nPt 293 (849)
T KOG0221|consen 220 NVSVPILGIKKFMLTHLVNI---DQNTISALQIFPSESHPSKVKSGLK--EGLSLFG-LLNRCHSKWGEKLLRLWFTNPT 293 (849)
T ss_pred cccccccceeEEeecceeee---ccchHHHHHhcccccccchhhhhhh--cchhHHH-HHHHHhhHHHHHHHHHHhcCCC
Confidence 57889999999999874211 112232322 55554332222222 3444444 4488999999999999866667
Q ss_pred CCHHHHHHHHHHHHHHHH--------HHHcCCCCCCCCCCCchhHHHHHHhcccC-CCCCHHHHHHHHHHHHHHHHHHHH
Q 003142 88 QTYQDSLRLLDETNAAIE--------MQKHGSCSLDLTGVDLSLVKSAIREVRRA-SPLRPNEALAVVALLQFSETLQLS 158 (844)
Q Consensus 88 ~~~~~~~~~l~et~ea~~--------~~~~~~~~~~~~~i~~~~v~~~l~ra~~g-~~L~~~EL~~i~~~L~~~~~lk~~ 158 (844)
+|..++..+++-+.-+.. .+. -.++.+. ++-..+.+.+.| +.|+- -..+++++..+-.+...
T Consensus 294 td~~~l~sR~~~i~~fl~~qNa~~~~~Ls-----~~lgr~k--~~~~~~~~~~sg~t~l~~--W~~~~stv~~~~~i~~~ 364 (849)
T KOG0221|consen 294 TDLGELSSRLDVIQFFLLPQNADMAQMLS-----RLLGRIK--NVPLILKRMKSGHTKLSD--WQVLYSTVYSALGIRDA 364 (849)
T ss_pred CcHHHHHHHHHHHHHHhcchhhHHHHHHH-----HHHhhcc--cHHHHHHHHhcCCceech--HHHHHHHHHHHHHHHHH
Confidence 899998888876543332 111 1134444 355667777766 33443 34566777666655544
Q ss_pred HHHHHhhhhhhhccccc--HHHHHHhcccchHHHHHHccccCcCC-------ccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 003142 159 LRAAIKEDADLYIRFMP--LTQMIMQLFVNRSLIKSIMQVVDEDG-------SIKDSASPALKQSRGQVQMLERKLYQLM 229 (844)
Q Consensus 159 l~~~~~~~~~~~~~~~~--L~~l~~~l~~~~~l~~~i~~~id~~G-------~v~D~AS~~L~~iR~~~~~~~~~~~~~l 229 (844)
++..-. .. .++. -.++ +....++..-+..+||-+| .|..+-+|+|+.+|+....+..-+-+..
T Consensus 365 ~rslp~-s~----~~~~~~~~~~---~~~l~eia~~~g~vIdF~~S~~~~r~Tv~~giD~elDE~r~~y~~lp~~Lt~vA 436 (849)
T KOG0221|consen 365 CRSLPQ-SI----QLFRDIAQEF---SDDLHEIASLIGKVIDFEGSLAENRFTVLPGIDPELDEKRRRYMGLPSFLTEVA 436 (849)
T ss_pred HHhCcc-ch----hhhhHHHHHH---HHHHHHHHHHhhheeccccccccceEEecCCCChHHHHHHHHHccchHHHHHHH
Confidence 433210 00 1110 1112 2234566677778888777 4788999999999999888555544444
Q ss_pred HHHHHhhccccccc-cEEeeCCEEEEEecCCcc-ccccEEe---e--cccCCeEEEecccccccHHHHHHHHHHHHHHHH
Q 003142 230 DMLIRNENNESLFL-EVSSIHGRLCIRTGADQL-SFKGLLL---S--SSSGIGSVIEPLSAVPLNDELQQARASVTKAEE 302 (844)
Q Consensus 230 ~~~~~~~~~~~~~~-~~t~r~gr~vi~v~~~~~-~~~giv~---~--S~sG~t~~iEP~~~v~lnn~l~~~~~~~~~e~~ 302 (844)
.+-........+.- -|-+-.=-|++.|+..+. ...|... + -.|-..+|+....+.+|.+.+.++.-++..-+.
T Consensus 437 r~e~~~L~~~~psv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~s~E~l~~rnart~eLD~~~GDIy~~i~D~et 516 (849)
T KOG0221|consen 437 RKELENLDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEEKLHYRNARTKELDALLGDIYCEIRDQET 516 (849)
T ss_pred HHHHHhhCCCCCceeEEEeeceeeEEecccccchhhcCCcccchHHHhcccceeEeecccHHhHHHHhhhHHHhhhhhHH
Confidence 33332222211111 111222234666666544 3333311 1 345667888888999999999999999999999
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeCCcccccccCCCCcccccCCccccceEEecCC
Q 003142 303 DVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKA 382 (844)
Q Consensus 303 ~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 382 (844)
.|+-.|..+|......|.+......+||++.++|..|.++||.+|.++. +.-.+.+.++
T Consensus 517 ~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~gy~~P~lv~---------------------e~~il~I~ng 575 (849)
T KOG0221|consen 517 LIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADYGYSRPRLVP---------------------EVLILRIQNG 575 (849)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc---------------------HHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999983 2234789999
Q ss_pred cchHHHHHhHHhhHHHHHhhHHhHHHHHHhhhcCCCcccCCCccCCCCCchhhhhhccCCccceeEEEEe-cCceEEEEE
Q 003142 383 YHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVIT 461 (844)
Q Consensus 383 rHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disl~-~~g~iv~It 461 (844)
|||+.+.- .+.+|||+..++ ++|++.+||
T Consensus 576 rh~l~e~~--------------------------------------------------~dtfvPNst~iggdkgri~vIT 605 (849)
T KOG0221|consen 576 RHPLMELC--------------------------------------------------ADTFVPNSTEIGGDKGRIKVIT 605 (849)
T ss_pred ChhHHHHH--------------------------------------------------HHhcCCCceeecCCCceEEEEe
Confidence 99998531 146899999999 899999999
Q ss_pred ccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEE
Q 003142 462 GPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLL 541 (844)
Q Consensus 462 GPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLL 541 (844)
|||.||||..||.+|++.++++.|+|+|+ +.+.++..|.++++++..+++..++|+|.-...+++.++..++..+|+|+
T Consensus 606 GpNasGKSiYlkqvglivfLahIGsFVPA-e~A~IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlI 684 (849)
T KOG0221|consen 606 GPNASGKSIYLKQVGLIVFLAHIGSFVPA-EEAEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLI 684 (849)
T ss_pred CCCCCCceEEEeechhhhHHHhhccccch-hhhhcchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEE
Confidence 99999999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCC--eEEEEEccchhHHhhhc--cccceeeeEE---EEecccceeeEEeecCCC
Q 003142 542 DEIGAGTNPLEGTALGMSLLEAFAESGS--LLTIATTHHGELKTLKY--SNDFFENACM---EFDEVKLKPTYKILWGVP 614 (844)
Q Consensus 542 DEP~sGlDp~~~~al~~~Ile~L~~~g~--t~vIitTHd~el~~~a~--~~~~v~ng~v---~fd~~~l~p~y~l~~G~~ 614 (844)
||.|.|||..+|..+...++.+....|. +.|+++||.+++..+.. ..+.+....| ..+.+.+.+.|+...|..
T Consensus 685 DEfGKGT~tedGlsLlasvm~~w~~rg~~~PrifvcThfheL~ne~~L~~n~i~qfltm~vlr~~ge~I~flyrv~~gl~ 764 (849)
T KOG0221|consen 685 DEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIFVCTHFHELVNEQLLPQNPIVQFLTMEVLREDGEDIVFLYRVCEGLA 764 (849)
T ss_pred hhccCCccccccHHHHHHHHHHHHhcCCCCCeEEEeccHHHhhhhccCCcchhhhhhhHHHHHhccCCeEEEEEeccchh
Confidence 9999999999999999999999887764 46999999999885431 1111111111 126678899999999999
Q ss_pred CCchHHHHHHHcCCCHHHHHHHHHHH
Q 003142 615 GRSSAINIAERLGLPGIVVQNARQLY 640 (844)
Q Consensus 615 g~S~a~~iA~~~gl~~~ii~~A~~~l 640 (844)
..|+|+.+|+..|+|++++.||..+.
T Consensus 765 k~sfal~~ak~~glp~~vV~Ra~~v~ 790 (849)
T KOG0221|consen 765 KASFALHTAKQAGLPDKVVARAKEVS 790 (849)
T ss_pred hhcccchhHhhcCCCHHHHHHHHHHH
Confidence 99999999999999999999998765
No 14
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.8e-35 Score=331.99 Aligned_cols=511 Identities=18% Similarity=0.246 Sum_probs=368.7
Q ss_pred HhhhhhcChHHHHH-----HHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHH-cCCCCCCCCCCCchh-
Q 003142 51 YESLRVLEWDKLCH-----SVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQK-HGSCSLDLTGVDLSL- 123 (844)
Q Consensus 51 ~~~l~~Le~~~i~~-----~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~-~~~~~~~~~~i~~~~- 123 (844)
..+++.++|++... .+..++.|+.|.+.++.-...|..+...+..+++-+.+...-.. ..++.+.+....+.+
T Consensus 266 ~~~lelV~~~~~kn~~~l~~vl~~T~t~~g~r~lRssilqpl~d~~ti~~rleaiqeL~a~~~L~~~Lr~~~k~~~dld~ 345 (867)
T KOG0220|consen 266 AQSLELVINNQYKNNHTLFGVLNYTKTPGGYRRLRSSILQPLTDIETINMRLEAIQELLADEELFFGLRSVIKRFLDLDQ 345 (867)
T ss_pred ccceEEechhhhhcccceeeeeeeeecccchhhHHhhhcccccchhhhhHHHHHHHHHhcCchHhhhhHHHHhhhhhHHH
Confidence 34567777877442 35578999999999888544557788888777766554442110 011111122221111
Q ss_pred -HHHHHHhcccCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcc--cchHHHHHHccc
Q 003142 124 -VKSAIREVRRASPLRPN----EALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLF--VNRSLIKSIMQV 196 (844)
Q Consensus 124 -v~~~l~ra~~g~~L~~~----EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~--~~~~l~~~i~~~ 196 (844)
+...+...-...+-.++ -+..+..+|..+.-++..+.... .+.+.++...+. -+..+.+-|..+
T Consensus 346 ~~s~~~~~~~~~~i~~~~s~I~~~~~Lk~tL~lv~~~~~al~~~~---------s~~~~e~~~~~~~~r~~~i~~~i~e~ 416 (867)
T KOG0220|consen 346 LLSVLVQIPTQDTVNAAESKINNLIYLKHTLELVDPLKIALKNCN---------SNLLREYYGSFKDKRFGIILEKIKEV 416 (867)
T ss_pred HHHHHHhhhhHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhch---------hHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 11111111111111111 22333444444444443332221 123344443333 233467777788
Q ss_pred cCcCC---------------ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccEEeeCCE-EEEEec--C
Q 003142 197 VDEDG---------------SIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGR-LCIRTG--A 258 (844)
Q Consensus 197 id~~G---------------~v~D~AS~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~r~gr-~vi~v~--~ 258 (844)
|++|- .|+.+-.-.|+-.|+-...+.++..+.+..+-......... .+..+.|- |-++-+ .
T Consensus 417 I~dd~l~a~~~l~~~~qkcyAvks~i~~~LDiaR~ty~ei~~~~~~~i~~l~E~~~~nl~~-~f~sarGF~~ri~~~~~~ 495 (867)
T KOG0220|consen 417 INDDALYAKGCLNLRTQKCYAVKSNINGFLDIARRTYTEIVDDIAGMISQLGEKFSLNLRL-SFSSARGFFIRITTDCIA 495 (867)
T ss_pred hhHHHHhccchhhhhccceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccc-cccccccEEEEeeccccc
Confidence 87762 24555556677777777666665555444433222111111 13333332 222222 1
Q ss_pred Ccc-ccccEEee-cccCCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 003142 259 DQL-SFKGLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARA 336 (844)
Q Consensus 259 ~~~-~~~giv~~-S~sG~t~~iEP~~~v~lnn~l~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a 336 (844)
... ..|..+.+ +-...++-+....++.+|.++.+.-.++.-.-+.++..|.+.+.++.+.+..+.+++..||++++.|
T Consensus 496 ~~~~~lP~~fi~~~~~~~~~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa 575 (867)
T KOG0220|consen 496 LPSDTLPSEFIKISKVKNSYSFTSADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFA 575 (867)
T ss_pred cccccCchhhhhhhhhcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 122 55666665 6666666677778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCceeeCCcccccccCCCCcccccCCccccceEEecCCcchHHHHHhHHhhHHHHHhhHHhHHHHHHhhhcC
Q 003142 337 TYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYG 416 (844)
Q Consensus 337 ~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~rHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (844)
.+....++++|+|+. .+-|..+|||+|+.-
T Consensus 576 ~~~~~~~y~~P~fT~------------------------slaI~qGRHPILe~i-------------------------- 605 (867)
T KOG0220|consen 576 HACTLSDYVRPEFTD------------------------SLAIKQGRHPILEKI-------------------------- 605 (867)
T ss_pred HhhccccccccccCC------------------------ceeeccCCCchhhhh--------------------------
Confidence 999999999999972 289999999999752
Q ss_pred CCcccCCCccCCCCCchhhhhhccCCccceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhcccccccccccccc
Q 003142 417 GNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKV 496 (844)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i 496 (844)
..++++.++..++++.++.+|||||+|||||.||.++++.+|+|+|+++|+ ..+.+
T Consensus 606 -----------------------~~ek~i~N~t~~t~~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA-~YaS~ 661 (867)
T KOG0220|consen 606 -----------------------SAEKPIANNTYVTEGSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPA-EYASF 661 (867)
T ss_pred -----------------------cccCcccCcceeecccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcch-hhccc
Confidence 235789999999988899999999999999999999999999999999999 89999
Q ss_pred chhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEc
Q 003142 497 PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT 576 (844)
Q Consensus 497 ~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitT 576 (844)
++|+++|+++|-.++++.+-|+|..+|+..+.|+..+++.+||+|||.+.||...+|.++.+++.+++..-..+ +++.|
T Consensus 662 pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~Lkay-TflAT 740 (867)
T KOG0220|consen 662 RVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLSLKAY-TFLAT 740 (867)
T ss_pred hHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCccccchhhHHHHHHHHHHhhHh-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988887 89999
Q ss_pred cchhHHhhhccccceeeeEEEEeccccee---eEEeecCCC-CCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 003142 577 HHGELKTLKYSNDFFENACMEFDEVKLKP---TYKILWGVP-GRSSAINIAERLGLPGIVVQNARQLYGAASAE 646 (844)
Q Consensus 577 Hd~el~~~a~~~~~v~ng~v~fd~~~l~p---~y~l~~G~~-g~S~a~~iA~~~gl~~~ii~~A~~~l~~~~~~ 646 (844)
|..++..++.-.+.|.|.++..+...-+- .|+|..|.. |.-|++.+++..-+|.+++..|+.+...-.+.
T Consensus 741 HFldIa~lan~~paVdnlHF~~q~~eNssk~~k~kLsrg~~~~~~yG~~~vE~s~iPd~i~e~a~~~~t~i~A~ 814 (867)
T KOG0220|consen 741 HFLDIAAIANYYPAVDNLHFLVQTDENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLPDSIVEDAKEITTQITAQ 814 (867)
T ss_pred HHHHHHHHhhcCccccceeeeeeecccchhhhhhhhhhhhhhcccccceEEEEecCCHHHHHhhhHHHHHHHHH
Confidence 99999999999999999988765432222 488887754 67789999999999999999998766444333
No 15
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=8.1e-37 Score=319.11 Aligned_cols=193 Identities=33% Similarity=0.497 Sum_probs=178.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS 520 (844)
..+|++++++. .++++++|+||||+||||+||+|+++.+++|.|.++|+ ....+++|++++.+++..+++..++|+|+
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~~~~~~~~~i~~~~~~~d~~~~~~StF~ 95 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SSATLSIFDSVLTRMGASDSIQHGMSTFM 95 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-CceEEeccceEEEEecCccccccccchHH
Confidence 46899999999 77899999999999999999999999999999999999 77899999999999999999999999999
Q ss_pred HHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccc-cceeeeEEEE
Q 003142 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSN-DFFENACMEF 598 (844)
Q Consensus 521 ~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~~~a~~~-~~v~ng~v~f 598 (844)
.+++++..++..+++++|+|||||++|||+.++.+++.++++.+.+. +++ +|++||+.++..+.... ..+.|.+|.|
T Consensus 96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~-~i~~TH~~~l~~~~~~~~~~v~~~~~~~ 174 (222)
T cd03287 96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCL-VLFVTHYPSLGEILRRFEGSIRNYHMSY 174 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCe-EEEEcccHHHHHHHHhcccCeEEEEEEE
Confidence 99999999999999999999999999999999999989999999987 776 99999999999877543 4578888886
Q ss_pred ec----------ccceeeEEeecCCCCCchHHHHHHHcCCCHHHHHHH
Q 003142 599 DE----------VKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNA 636 (844)
Q Consensus 599 d~----------~~l~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A 636 (844)
+. +++.|+|++..|+++.|||+.+|++.|+|++++++|
T Consensus 175 ~~~~~~~~~~~~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 175 LESQKDFETSDSQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred EEeccccccccCCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 53 468899999999999999999999999999999986
No 16
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=4.4e-36 Score=312.83 Aligned_cols=197 Identities=31% Similarity=0.459 Sum_probs=183.8
Q ss_pred CccceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhH
Q 003142 442 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521 (844)
Q Consensus 442 ~~~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~ 521 (844)
..+|+++++++.+.++++|+|||||||||+||+|+++.++++.|.++|+ ....++++++++..++..+++..+.|+|..
T Consensus 17 ~~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~-~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~ 95 (216)
T cd03284 17 EPFVPNDTELDPERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPA-SKAEIGVVDRIFTRIGASDDLAGGRSTFMV 95 (216)
T ss_pred CceEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHHHHhccCCeecc-ccceecceeeEeccCCchhhhccCcchHHH
Confidence 4689999999966699999999999999999999999999999999998 668899999999999999999999999999
Q ss_pred HhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEEe-
Q 003142 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFD- 599 (844)
Q Consensus 522 ~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd- 599 (844)
++.++..++..+.+|+|+|||||++||++.++..+...+++.+.+. +++ +|++||+.++..+++....+.+++|.++
T Consensus 96 e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~-vi~~TH~~~l~~l~~~~~~v~~~~~~~~~ 174 (216)
T cd03284 96 EMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAK-TLFATHYHELTELEGKLPRVKNFHVAVKE 174 (216)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCc-EEEEeCcHHHHHHhhcCCCeEEEEEEEEe
Confidence 9999999999999999999999999999999998888899999887 887 9999999999999999999999999884
Q ss_pred -cccceeeEEeecCCCCCchHHHHHHHcCCCHHHHHHHHHHH
Q 003142 600 -EVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLY 640 (844)
Q Consensus 600 -~~~l~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~l 640 (844)
.+.+.|+|++..|.++.|||+.+|++.|+|++++++|++++
T Consensus 175 ~~~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~~ 216 (216)
T cd03284 175 KGGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREIL 216 (216)
T ss_pred eCCeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999753
No 17
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=100.00 E-value=1e-35 Score=306.19 Aligned_cols=186 Identities=58% Similarity=0.920 Sum_probs=173.5
Q ss_pred CccceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhH
Q 003142 442 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521 (844)
Q Consensus 442 ~~~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~ 521 (844)
.++|++++++..+.++++|+||||||||||||+|+...+++|.|+++|+.....++++++++..++..+++...+++||+
T Consensus 15 ~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~ 94 (200)
T cd03280 15 EKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSS 94 (200)
T ss_pred CceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHH
Confidence 46899999998766889999999999999999999889999999999986567889999999999999999999999999
Q ss_pred HhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEecc
Q 003142 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 601 (844)
Q Consensus 522 ~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~~ 601 (844)
+|+++..++..+.+|+++|||||++|||+..+..+...+++.+.+.+.+ +|++||+.++..++++...+.+|.+.++.+
T Consensus 95 g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~-vi~~tH~~~l~~~~d~~~~l~~g~l~~~~~ 173 (200)
T cd03280 95 HMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGAL-VIATTHYGELKAYAYKREGVENASMEFDPE 173 (200)
T ss_pred HHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCE-EEEECCHHHHHHHHhcCCCeEEEEEEEecC
Confidence 9999999998889999999999999999999998877788888877887 999999998889999999999999999999
Q ss_pred cceeeEEeecCCCCCchHHHHHHHcCC
Q 003142 602 KLKPTYKILWGVPGRSSAINIAERLGL 628 (844)
Q Consensus 602 ~l~p~y~l~~G~~g~S~a~~iA~~~gl 628 (844)
.+.|+|++..|++++|||+++|+++|+
T Consensus 174 ~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 174 TLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred cccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 999999999999999999999999986
No 18
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=9.5e-35 Score=302.19 Aligned_cols=186 Identities=30% Similarity=0.437 Sum_probs=168.3
Q ss_pred CccceeEEEEecCc-eEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhh
Q 003142 442 AHPVPIDIFIARKT-RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520 (844)
Q Consensus 442 ~~~V~~disl~~~g-~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS 520 (844)
+.+|+||+.++.+. ++++|+||||+|||||||+|+...++++.|.++|+ ....++++++++..++..+++..++|+|+
T Consensus 15 ~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a-~~~~~~~~d~i~~~l~~~~si~~~~S~f~ 93 (213)
T cd03281 15 DSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPA-DSATIGLVDKIFTRMSSRESVSSGQSAFM 93 (213)
T ss_pred CceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEc-CCcEEeeeeeeeeeeCCccChhhccchHH
Confidence 46899999999654 88999999999999999999998889999999999 77899999999999999999999999999
Q ss_pred HHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEccchhHHhhhc--cccceeeeEE
Q 003142 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG--SLLTIATTHHGELKTLKY--SNDFFENACM 596 (844)
Q Consensus 521 ~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g--~t~vIitTHd~el~~~a~--~~~~v~ng~v 596 (844)
.+++++..++..+.+|+|+|||||++||||.++.+++.++++.+.+.| +.++|++||+.++..... ....+.+.+|
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~~~~~~~~~~~~~ 173 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSLLPERLKIKFLTM 173 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhhhccCCceEEEEE
Confidence 999999999999999999999999999999999999888999987653 223899999999987664 5677889999
Q ss_pred EE--e------cccceeeEEeecCCCCCchHHHHHHHcCC
Q 003142 597 EF--D------EVKLKPTYKILWGVPGRSSAINIAERLGL 628 (844)
Q Consensus 597 ~f--d------~~~l~p~y~l~~G~~g~S~a~~iA~~~gl 628 (844)
.+ + .+.+.|+|++..|+++.|||+++|++.|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 174 EVLLNPTSTSPNEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred EEEEcCCccCCCCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 87 4 26789999999999999999999999985
No 19
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=4.7e-34 Score=295.03 Aligned_cols=185 Identities=28% Similarity=0.519 Sum_probs=172.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS 520 (844)
+++|+++++++ ..+++++|+||||+||||+||+++++.+++|+|+++|+ ....++.+++++..++..+++....|+|+
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa-~~~~l~~~d~I~~~~~~~d~~~~~~S~fs 93 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPA-EYATLPIFNRLLSRLSNDDSMERNLSTFA 93 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcch-hhcCccChhheeEecCCccccchhhhHHH
Confidence 57899999999 67799999999999999999999999999999999999 77889999999999999999999999999
Q ss_pred HHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 521 ~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
.+++++..++..+++|+|+|||||++||||.++..+..++++.+.+.+.+ +|++||+.++..+......+.+.+|.++.
T Consensus 94 ~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~-~i~~TH~~~l~~~~~~~~~v~~~~~~~~~ 172 (204)
T cd03282 94 SEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKEST-VFFATHFRDIAAILGNKSCVVHLHMKAQS 172 (204)
T ss_pred HHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCE-EEEECChHHHHHHhhcCCCeEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999988887 99999999999888777788888887764
Q ss_pred ---ccceeeEEeecCCCC-CchHHHHHHHcCC
Q 003142 601 ---VKLKPTYKILWGVPG-RSSAINIAERLGL 628 (844)
Q Consensus 601 ---~~l~p~y~l~~G~~g-~S~a~~iA~~~gl 628 (844)
+.+.|+|++..|.+. .|||+++|+.+.+
T Consensus 173 ~~~~~~~~~ykl~~G~~~~~~~g~~~a~~~~~ 204 (204)
T cd03282 173 INSNGIEMAYKLVLGLYRIVDDGIRFVRVLAL 204 (204)
T ss_pred cCCCceeeEEEEeeCCCCCCccHHHHHHHhhC
Confidence 678899999999999 9999999998753
No 20
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=100.00 E-value=4.2e-33 Score=287.15 Aligned_cols=184 Identities=41% Similarity=0.573 Sum_probs=171.2
Q ss_pred CccceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhH
Q 003142 442 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521 (844)
Q Consensus 442 ~~~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~ 521 (844)
..+|++|++++.+ ++++|+||||||||||||+|++..++++.|.++|+ ....++++++++..++..+++...+|+|+.
T Consensus 17 ~~~~~~~~~l~~~-~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~ 94 (202)
T cd03243 17 ETFVPNDINLGSG-RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-ESASIPLVDRIFTRIGAEDSISDGRSTFMA 94 (202)
T ss_pred CceEeeeEEEcCC-eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-cccccCCcCEEEEEecCcccccCCceeHHH
Confidence 5689999999954 78999999999999999999988899999999998 778899999999999999999999999999
Q ss_pred HhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEecc
Q 003142 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 601 (844)
Q Consensus 522 ~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~~ 601 (844)
+++++..++..+.+|+++|||||++||||.++..+...+++.+.+.+.+ +|++||+.++...+++...+.+++|.++.+
T Consensus 95 e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~-vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~ 173 (202)
T cd03243 95 ELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCR-TLFATHFHELADLPEQVPGVKNLHMEELIT 173 (202)
T ss_pred HHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe-EEEECChHHHHHHhhcCCCeEEEEEEEEec
Confidence 9999999999999999999999999999999988887888888888887 999999999999999999999999998765
Q ss_pred --cceeeEEeecCCCCCchHHHHHHHcCC
Q 003142 602 --KLKPTYKILWGVPGRSSAINIAERLGL 628 (844)
Q Consensus 602 --~l~p~y~l~~G~~g~S~a~~iA~~~gl 628 (844)
++.++|++..|.++.|||+++|+++|+
T Consensus 174 ~~~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 174 TGGLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred CCeeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 689999999999999999999999986
No 21
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=6.2e-33 Score=282.36 Aligned_cols=181 Identities=43% Similarity=0.651 Sum_probs=169.3
Q ss_pred EEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCC
Q 003142 457 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQ 536 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p 536 (844)
+++|||||||||||+||+|+...+++|+|+++|+ ....++++++++..++..+++..++|+|+++++++..++..+++|
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a-~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPA-ESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeee-hheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999999 789999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEEecc--cceeeEEeecCC
Q 003142 537 SLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFDEV--KLKPTYKILWGV 613 (844)
Q Consensus 537 ~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~~--~l~p~y~l~~G~ 613 (844)
+|+|+|||++||||.++..+...+++.+.+. +++ +|++||+.++..+++....+.+++|.++.+ .+.|+|++..|.
T Consensus 80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~-iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~Y~l~~G~ 158 (185)
T smart00534 80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGAL-TLFATHYHELTKLADEHPGVRNLHMSADEETENLTFLYKLTPGV 158 (185)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCe-EEEEecHHHHHHHhhcCccceEEEEEEEEecCceeEEEEEeECC
Confidence 9999999999999999999988899988874 776 999999999999999888999999987654 488999999999
Q ss_pred CCCchHHHHHHHcCCCHHHHHHHHHH
Q 003142 614 PGRSSAINIAERLGLPGIVVQNARQL 639 (844)
Q Consensus 614 ~g~S~a~~iA~~~gl~~~ii~~A~~~ 639 (844)
++.|||+.+|++.|+|++++++|+++
T Consensus 159 ~~~s~a~~~a~~~g~~~~i~~~a~~~ 184 (185)
T smart00534 159 AGKSYGIEVAKLAGLPKEVIERAKEI 184 (185)
T ss_pred CCCcHHHHHHHHhCCCHHHHHHHHHh
Confidence 99999999999999999999999875
No 22
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=6e-32 Score=294.21 Aligned_cols=292 Identities=18% Similarity=0.190 Sum_probs=236.8
Q ss_pred HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH--HHHcCCCCCCCCCCCchhHHHHHHhcccCCCCCH
Q 003142 62 LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE--MQKHGSCSLDLTGVDLSLVKSAIREVRRASPLRP 139 (844)
Q Consensus 62 i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~--~~~~~~~~~~~~~i~~~~v~~~l~ra~~g~~L~~ 139 (844)
++..| .+|.|++|++.++.|+..|..+..+++++++.+.++.. .+... ....+.++. |+...+.++..| .+++
T Consensus 4 L~~~l-~~~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~~l~~~-l~~~L~~~~--Di~~~l~~~~~~-~~~~ 78 (308)
T smart00533 4 LFELL-NHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVENPELRQK-LRQLLKRIP--DLERLLSRIERG-RASP 78 (308)
T ss_pred HHHHH-ccCCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhChHHHHH-HHHHHccCC--cHHHHHHHHHcC-CCCH
Confidence 45555 47999999999999655557899999999999999997 33221 123477776 588889998776 6899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHH----HHHhcccchHHHHHHccccCcC-CccCCCCCHHHHHH
Q 003142 140 NEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQ----MIMQLFVNRSLIKSIMQVVDED-GSIKDSASPALKQS 214 (844)
Q Consensus 140 ~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~----l~~~l~~~~~l~~~i~~~id~~-G~v~D~AS~~L~~i 214 (844)
.|+..+..++.++..+++++.... ...+ .+.+.. +...+..+.++...+..+++++ |.|+|+||++|+.|
T Consensus 79 ~el~~l~~~l~~~~~l~~~l~~~~---~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~s~~Ld~l 153 (308)
T smart00533 79 RDLLRLYDSLEGLKEIRQLLESLD---GPLL--GLLLKVILEPLLELLELLLELLNDDDPLEVNDGGLIKDGFDPELDEL 153 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---cHHH--HHHHHhhccchHHHHHHHHHHhccCCcccccCCCeeCCCCCHHHHHH
Confidence 999999999999999987775421 0000 011111 1222333445566666677666 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc--cEEeeCCEEEEEecCCcc-ccccEEee-cccCCeEEEecccccccHHHH
Q 003142 215 RGQVQMLERKLYQLMDMLIRNENNESLFL--EVSSIHGRLCIRTGADQL-SFKGLLLS-SSSGIGSVIEPLSAVPLNDEL 290 (844)
Q Consensus 215 R~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~t~r~gr~vi~v~~~~~-~~~giv~~-S~sG~t~~iEP~~~v~lnn~l 290 (844)
|++++.++.++.+.++.+.++... ...+ .++.+ | |||+|+.+++ .+||.+|+ |+||+|+|++|..++++||++
T Consensus 154 r~~~~~l~~~l~~~~~~~~~~~~~-~~l~~~~~~~~-g-~~i~v~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~l~~~~ 230 (308)
T smart00533 154 REKLEELEEELEELLKKEREELGI-DSLKLGYNKVH-G-YYIEVTKSEAKKVPKDFIRRSSLKNTERFTTPELKELENEL 230 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CceEEeEeccE-E-EEEEecchhhccCChHHHHHhhhcccceeeCHHHHHHHHHH
Confidence 999999999999999999876532 2233 34444 4 9999999999 99999998 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeCCcccccccCCCCcccccCC
Q 003142 291 QQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSS 370 (844)
Q Consensus 291 ~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a~~a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 370 (844)
.++..++..++.+|+++|+..+.++.+.|..+.+++++||+++|+|.+|.++++|+|.|++
T Consensus 231 ~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~~~~~P~i~~------------------- 291 (308)
T smart00533 231 LEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEGNYVRPEFVD------------------- 291 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCeeCC-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999973
Q ss_pred ccccceEEecCCcchHHH
Q 003142 371 SEREWTIYLPKAYHPLLL 388 (844)
Q Consensus 371 ~~~~~~i~l~~~rHPlL~ 388 (844)
+..+.++++|||++.
T Consensus 292 ---~~~l~i~~~rHPlle 306 (308)
T smart00533 292 ---SGELEIKNGRHPVLE 306 (308)
T ss_pred ---CCCEEEeeCCCCccc
Confidence 235999999999984
No 23
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.97 E-value=2.3e-31 Score=274.09 Aligned_cols=183 Identities=28% Similarity=0.441 Sum_probs=161.7
Q ss_pred CccceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhH
Q 003142 442 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521 (844)
Q Consensus 442 ~~~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~ 521 (844)
+++|++|++++.+ ++++|+||||||||||||+|++..++++.|.++|+ ....++ ++.+|..++..+++..+++.|..
T Consensus 13 ~~~v~n~i~l~~g-~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a-~~~~~q-~~~l~~~~~~~d~l~~~~s~~~~ 89 (199)
T cd03283 13 EKRVANDIDMEKK-NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCA-SSFELP-PVKIFTSIRVSDDLRDGISYFYA 89 (199)
T ss_pred CCeecceEEEcCC-cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEec-CccCcc-cceEEEeccchhccccccChHHH
Confidence 4689999999975 99999999999999999999999999999999998 555566 67788899999999999999988
Q ss_pred HhhHHHHHHHhCC--CCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEE--E
Q 003142 522 HLKQIGNIISQST--SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM--E 597 (844)
Q Consensus 522 ~~~rl~~il~~a~--~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v--~ 597 (844)
++.++..++..+. +|+++|||||++|||+.++..+...+++.+.+.+.+ +|++||+.++....+....+.+.++ .
T Consensus 90 e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~t-iiivTH~~~~~~~~~~~~~v~~~~~~~~ 168 (199)
T cd03283 90 ELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTI-GIISTHDLELADLLDLDSAVRNYHFRED 168 (199)
T ss_pred HHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEcCcHHHHHhhhcCCCeEEEEEEEE
Confidence 8999999999888 999999999999999998888877788888877886 9999999999887777777777655 4
Q ss_pred EecccceeeEEeecCCCCCchHHHHHHHcCC
Q 003142 598 FDEVKLKPTYKILWGVPGRSSAINIAERLGL 628 (844)
Q Consensus 598 fd~~~l~p~y~l~~G~~g~S~a~~iA~~~gl 628 (844)
++...+.|+|++..|+++.|+|+++|++.|+
T Consensus 169 ~~~~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 169 IDDNKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred EECCeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 5567789999999999999999999999885
No 24
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.88 E-value=2.6e-22 Score=212.41 Aligned_cols=159 Identities=19% Similarity=0.172 Sum_probs=120.1
Q ss_pred cCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH--------------------hhccccccccccccc---
Q 003142 440 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--------------------MAKSGLHILSSEYAK--- 495 (844)
Q Consensus 440 ~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~--------------------~~q~G~~vpa~~~~~--- 495 (844)
.++++|.++++|+ +.|++++|+||||||||||||+|+++.. .++.-.++|+.....
T Consensus 12 y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 12 YGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred ECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence 3578999999999 8899999999999999999999975421 111222444321110
Q ss_pred -------------cch-----------hHHHhhhCCchhhHhhhhhhhhHHhhHHH-HHHHhCCCCcEEEEecCCCCCCH
Q 003142 496 -------------VPW-----------FDSVFADIGDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 496 -------------i~~-----------~~~i~~~ig~~q~i~~~lstfS~~~~rl~-~il~~a~~p~LLLLDEP~sGlDp 550 (844)
.++ ..+.+..++..+...+.+.++||+.+++. .+.+++++|++|||||||++||+
T Consensus 92 tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi 171 (258)
T COG1120 92 TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDI 171 (258)
T ss_pred EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCH
Confidence 011 12235666777777778888898665554 45567999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 551 LEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 551 ~~~~al~~~Ile~L~-~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
.....++. ++..+. ++|.| +|+|+||.+++ .||++.+.+.+|.+...+
T Consensus 172 ~~Q~evl~-ll~~l~~~~~~t-vv~vlHDlN~A~ryad~~i~lk~G~i~a~G 221 (258)
T COG1120 172 AHQIEVLE-LLRDLNREKGLT-VVMVLHDLNLAARYADHLILLKDGKIVAQG 221 (258)
T ss_pred HHHHHHHH-HHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCeEEeec
Confidence 88888865 556666 66887 99999999888 699999999999998755
No 25
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=4.7e-22 Score=209.56 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=114.2
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-----------------ccccccccccc-----------
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----------------SGLHILSSEYA----------- 494 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-----------------~G~~vpa~~~~----------- 494 (844)
.|+.|++|. ..|++++|+||||||||||+|+|.++....+ .-.|+|+....
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~ 97 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV 97 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHH
Confidence 699999999 8899999999999999999999966432111 11245542110
Q ss_pred -------ccc-----------hhHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 495 -------KVP-----------WFDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 495 -------~i~-----------~~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
..+ .++..+..+|+.+.....++.+||++ ||+..+.+++++|+|+||||||+|+|+.....
T Consensus 98 V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~ 177 (254)
T COG1121 98 VLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKE 177 (254)
T ss_pred HHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHH
Confidence 111 12334566777777888888999865 55666667899999999999999999966666
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 556 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 556 l~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+ ..++..+++.|+| ||++|||.... .++|++..+ |..+.+.
T Consensus 178 i-~~lL~~l~~eg~t-Il~vtHDL~~v~~~~D~vi~L-n~~~~~~ 219 (254)
T COG1121 178 I-YDLLKELRQEGKT-VLMVTHDLGLVMAYFDRVICL-NRHLIAS 219 (254)
T ss_pred H-HHHHHHHHHCCCE-EEEEeCCcHHhHhhCCEEEEE-cCeeEec
Confidence 6 5788889888997 99999998766 688888765 6666554
No 26
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.4e-21 Score=227.53 Aligned_cols=251 Identities=13% Similarity=0.070 Sum_probs=156.2
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------ccccccccccc----chh------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEYAKV----PWF------ 499 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------~~vpa~~~~~i----~~~------ 499 (844)
+++.++.+++|. ..|++++|+||||||||||||+|++..... .| .+++......+ ..+
T Consensus 323 ~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~ 401 (638)
T PRK10636 323 GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV-SGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARL 401 (638)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEECCCEEEEEecCcchhhCCccchHHHHHHHh
Confidence 356789999999 889999999999999999999997653211 11 12222100000 011
Q ss_pred ---------HHHhhhCCch-hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003142 500 ---------DSVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568 (844)
Q Consensus 500 ---------~~i~~~ig~~-q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g 568 (844)
..++..++.. ......++.+|++++ ++..+.+++.+|+||||||||+|||+.....+...|.+ + +
T Consensus 402 ~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~-~---~ 477 (638)
T PRK10636 402 APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALID-F---E 477 (638)
T ss_pred CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHH-c---C
Confidence 1223344443 245566778888665 55666677899999999999999999777766544433 3 4
Q ss_pred CeEEEEEccchhHH-hhhccccceeeeEEE-EecccceeeEE--eecCCC-CCchHHHHH---HHcCC-CH-H---H---
Q 003142 569 SLLTIATTHHGELK-TLKYSNDFFENACME-FDEVKLKPTYK--ILWGVP-GRSSAINIA---ERLGL-PG-I---V--- 632 (844)
Q Consensus 569 ~t~vIitTHd~el~-~~a~~~~~v~ng~v~-fd~~~l~p~y~--l~~G~~-g~S~a~~iA---~~~gl-~~-~---i--- 632 (844)
+| ||+||||.++. .+|+++..+.+|.+. |++..- .|. ...... ....+ ... ..... +. . -
T Consensus 478 gt-vi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 553 (638)
T PRK10636 478 GA-LVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLE--DYQQWLSDVQKQENQTD-EAPKENNANSAQARKDQKRREAE 553 (638)
T ss_pred Ce-EEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHH--HHHHHHhhhhhhhhhhc-cccccccccccccchhhhhHHHH
Confidence 56 99999998877 589999999999986 443211 120 000000 00000 000 00000 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003142 633 VQNARQLYGAASAEINEVIIEMERFKTQFLEHVHEARH-------FLMLSRNLHKNLLRTRRKILEHCASQRFRK 700 (844)
Q Consensus 633 i~~A~~~l~~~~~~le~~i~~Le~~~~~~e~~~~~~~~-------~~~~~~~~~~~l~~~~~~l~e~~~~~~~~~ 700 (844)
.........++..++|+.|++||.++.++++++.+... ...++.+.+.++++++++++++|+++.+++
T Consensus 554 ~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 554 LRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001122334457899999999999999998876531 456667777888888889999998877544
No 27
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=2.5e-21 Score=197.07 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=119.4
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc----------------------cccccccc--cccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------------------SGLHILSS--EYAK 495 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q----------------------~G~~vpa~--~~~~ 495 (844)
|+..|+++++++ ..|++++|+||+|||||||||||.++..... .|+ +.+. -+..
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm-VFQ~fnLFPH 91 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM-VFQQFNLFPH 91 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe-eccccccccc
Confidence 567899999999 8999999999999999999999965432221 111 1110 0000
Q ss_pred cchh----------------------HHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 496 VPWF----------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 496 i~~~----------------------~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
.... ..++..+|..+....+.+.+||+++ |++.+.+++.+|+++|+|||||+|||.-
T Consensus 92 lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPEl 171 (240)
T COG1126 92 LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL 171 (240)
T ss_pred chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHH
Confidence 1111 1346677888888888899998665 5566667899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
...+. .++..|++.|.| .|+|||++.|+ ..|+++..+..|.+...+
T Consensus 172 v~EVL-~vm~~LA~eGmT-MivVTHEM~FAr~VadrviFmd~G~iie~g 218 (240)
T COG1126 172 VGEVL-DVMKDLAEEGMT-MIIVTHEMGFAREVADRVIFMDQGKIIEEG 218 (240)
T ss_pred HHHHH-HHHHHHHHcCCe-EEEEechhHHHHHhhheEEEeeCCEEEEec
Confidence 77765 677889999997 99999999999 589999999999776443
No 28
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=2.9e-21 Score=210.37 Aligned_cols=156 Identities=19% Similarity=0.255 Sum_probs=115.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------ccccccccccc--ccc--
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSGLHILSSEY--AKV-- 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~G~~vpa~~~--~~i-- 496 (844)
++.++++++|. .+|++++|+||||||||||||+|+++.... +.| ++|.... ..+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-y~~~~~~~~~~lT~ 95 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG-YVPQEPSLYPELTV 95 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE-EEccCCCCCccccH
Confidence 47899999999 889999999999999999999997553221 111 2222110 000
Q ss_pred -------------------chhHHHhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 497 -------------------PWFDSVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 497 -------------------~~~~~i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
..++.++..++.........++||++|++ +..+.+++.+|+|+||||||+||||.....+
T Consensus 96 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~ 175 (293)
T COG1131 96 RENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175 (293)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH
Confidence 01223455566665444557889988755 5566678999999999999999999777766
Q ss_pred HHHHHHHHHhcC-CeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 557 GMSLLEAFAESG-SLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 557 ~~~Ile~L~~~g-~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+.++..+.+.| .| ||+|||+++.. .+|+++..+.+|.+.+..
T Consensus 176 -~~~l~~l~~~g~~t-vlissH~l~e~~~~~d~v~il~~G~~~~~g 219 (293)
T COG1131 176 -WELLRELAKEGGVT-ILLSTHILEEAEELCDRVIILNDGKIIAEG 219 (293)
T ss_pred -HHHHHHHHhCCCcE-EEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence 56777788877 66 99999997665 579999999999999876
No 29
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.85 E-value=4.9e-21 Score=197.63 Aligned_cols=158 Identities=16% Similarity=0.252 Sum_probs=114.8
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh------------------------ccccccc-ccccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA------------------------KSGLHIL-SSEYA 494 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~------------------------q~G~~vp-a~~~~ 494 (844)
|++.|.++++|+ ..|++++|+||+|+|||||||+|+++.... ++|.... +.-+.
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFs 98 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFS 98 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecccccc
Confidence 678999999999 999999999999999999999996542211 1121110 00112
Q ss_pred ccchhHHH----------------------hhhCCchhh-HhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 495 KVPWFDSV----------------------FADIGDEQS-LSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 495 ~i~~~~~i----------------------~~~ig~~q~-i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
.+.+++++ +...|.... .+...|.+||+|++ .+.+.+++.+|+|+++||||+||||
T Consensus 99 sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDP 178 (263)
T COG1127 99 SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDP 178 (263)
T ss_pred ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCc
Confidence 22222221 223455555 56677889999965 5555677999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CCeEEEEEccchh-HHhhhccccceeeeEEEEec
Q 003142 551 LEGTALGMSLLEAFAES-GSLLTIATTHHGE-LKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~-g~t~vIitTHd~e-l~~~a~~~~~v~ng~v~fd~ 600 (844)
.....+. .++..|.+. |.| ++++|||.+ +...||++..+.+|++.+.+
T Consensus 179 I~a~~~~-~LI~~L~~~lg~T-~i~VTHDl~s~~~i~Drv~~L~~gkv~~~G 228 (263)
T COG1127 179 ISAGVID-ELIRELNDALGLT-VIMVTHDLDSLLTIADRVAVLADGKVIAEG 228 (263)
T ss_pred chHHHHH-HHHHHHHHhhCCE-EEEEECChHHHHhhhceEEEEeCCEEEEeC
Confidence 7777665 566666655 676 999999964 55799999999999999875
No 30
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=7.5e-21 Score=196.00 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=114.1
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh-----------------cccccccccccc---ccchh
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-----------------KSGLHILSSEYA---KVPWF 499 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-----------------q~G~~vpa~~~~---~i~~~ 499 (844)
+++.+.+|++|. ++|++++++||||+||||++|+|.++.-.. ..| |.|. +.. .+.+.
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG-yLPE-ERGLy~k~tv~ 90 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG-YLPE-ERGLYPKMTVE 90 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc-cChh-hhccCccCcHH
Confidence 567899999999 999999999999999999999995543221 112 3332 111 12222
Q ss_pred HH---------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 500 DS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 500 ~~---------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
++ ++.+++..........++|.++ |++..+.+.+++|.|||||||||||||.+...+-
T Consensus 91 dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk 170 (300)
T COG4152 91 DQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK 170 (300)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHH
Confidence 22 2333333333344445667655 5567777889999999999999999998888776
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 558 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 558 ~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
..| ..+++.|+| ||++||.++.+ .+|++...+..|+..+++
T Consensus 171 ~~I-~~lk~~Gat-IifSsH~Me~vEeLCD~llmL~kG~~V~~G 212 (300)
T COG4152 171 DAI-FELKEEGAT-IIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212 (300)
T ss_pred HHH-HHHHhcCCE-EEEecchHHHHHHHhhhhheecCCceEEec
Confidence 555 557999998 99999998777 699999999999988765
No 31
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.84 E-value=1.1e-19 Score=217.69 Aligned_cols=249 Identities=14% Similarity=0.069 Sum_probs=147.8
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------cccccccc---cccchhHH-----
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEY---AKVPWFDS----- 501 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------~~vpa~~~---~~i~~~~~----- 501 (844)
+++.++.+++|. ..|++++|+||||||||||||+|++.... ..| .+++.... ....+.+.
T Consensus 330 ~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~ 408 (635)
T PRK11147 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA-DSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGK 408 (635)
T ss_pred CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhc
Confidence 346789999999 88999999999999999999999765321 111 12222110 01111111
Q ss_pred --------------HhhhCCch-hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 003142 502 --------------VFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565 (844)
Q Consensus 502 --------------i~~~ig~~-q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~ 565 (844)
++..++.. +.....++++|++++ ++..+.+++.+|++|||||||+|||+.....+. +.+.
T Consensus 409 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~----~~l~ 484 (635)
T PRK11147 409 QEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE----ELLD 484 (635)
T ss_pred ccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH----HHHH
Confidence 12233332 234455677888765 456666778999999999999999997665543 3334
Q ss_pred hcCCeEEEEEccchhHH-hhhcccccee-eeEEEEecccceeeEEeecC-CC-CCchHHHHHHHcCCCHH-HHHH--H--
Q 003142 566 ESGSLLTIATTHHGELK-TLKYSNDFFE-NACMEFDEVKLKPTYKILWG-VP-GRSSAINIAERLGLPGI-VVQN--A-- 636 (844)
Q Consensus 566 ~~g~t~vIitTHd~el~-~~a~~~~~v~-ng~v~fd~~~l~p~y~l~~G-~~-g~S~a~~iA~~~gl~~~-ii~~--A-- 636 (844)
+.++| ||+||||.++. .+|+++..+. +|.+.....+.. .|.-... .. +....-.-.....-+.. .-.+ +
T Consensus 485 ~~~~t-vi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (635)
T PRK11147 485 SYQGT-VLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYH-DARQQQAQYLALKQPAVKKKEEAAAPKAETVKRSSKKL 562 (635)
T ss_pred hCCCe-EEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHH-HHHHHHHHHHhhhhhhccccccccccccchhhhhhhhh
Confidence 44566 99999998877 5899998887 788754322111 1210000 00 00000000000000000 0000 0
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003142 637 -RQLYGAASAEINEVIIEMERFKTQFLEHVHEARH------FLMLSRNLHKNLLRTRRKILEHCASQR 697 (844)
Q Consensus 637 -~~~l~~~~~~le~~i~~Le~~~~~~e~~~~~~~~------~~~~~~~~~~~l~~~~~~l~e~~~~~~ 697 (844)
.+...+ ...+|+.|++||.++.++++++.+... ...++.+.++++++++++++++|+++.
T Consensus 563 ~~~~~~~-~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 629 (635)
T PRK11147 563 SYKLQRE-LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELE 629 (635)
T ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222 567788888888888888888866531 456666777777888888888887665
No 32
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.4e-20 Score=196.25 Aligned_cols=150 Identities=23% Similarity=0.252 Sum_probs=115.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcc-----cc----------ccccccccccch-------
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-----GL----------HILSSEYAKVPW------- 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~-----G~----------~vpa~~~~~i~~------- 498 (844)
+..|+.+++|+ ..|++++|+||+|||||||||+|+++.-.... |. ++++ ...-+||
T Consensus 15 ~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ-~~~LlPW~Tv~~NV 93 (248)
T COG1116 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ-EDALLPWLTVLDNV 93 (248)
T ss_pred ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec-cCcccchhhHHhhh
Confidence 46799999999 99999999999999999999999876433211 11 1111 1111221
Q ss_pred -----------------hHHHhhhCCchhhHhhhhhhhhHHhhHH-HHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHH
Q 003142 499 -----------------FDSVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560 (844)
Q Consensus 499 -----------------~~~i~~~ig~~q~i~~~lstfS~~~~rl-~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~I 560 (844)
....+..+|..+.-......+||+|++. +.+.+++.+|++|||||||++||...+..+-..+
T Consensus 94 ~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l 173 (248)
T COG1116 94 ALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDEL 173 (248)
T ss_pred eehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHH
Confidence 2334556677777777888899999665 5555779999999999999999999999998888
Q ss_pred HHHHHhcCCeEEEEEccchhHH-hhhccccceee
Q 003142 561 LEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 593 (844)
Q Consensus 561 le~L~~~g~t~vIitTHd~el~-~~a~~~~~v~n 593 (844)
++...+.+.| |++||||.+.+ .+++++..+.+
T Consensus 174 ~~lw~~~~~T-vllVTHdi~EAv~LsdRivvl~~ 206 (248)
T COG1116 174 LRLWEETRKT-VLLVTHDVDEAVYLADRVVVLSN 206 (248)
T ss_pred HHHHHhhCCE-EEEEeCCHHHHHhhhCEEEEecC
Confidence 8888888887 99999998776 57888887777
No 33
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.83 E-value=3.7e-20 Score=187.51 Aligned_cols=153 Identities=19% Similarity=0.240 Sum_probs=115.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccccccc----------ccccchhHHHhhhCCchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE----------YAKVPWFDSVFADIGDEQ 510 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~----------~~~i~~~~~i~~~ig~~q 510 (844)
++.++.+++|. .+|++++|+||||+|||||+++|+++.. +..|....... ...+++..+++..++..+
T Consensus 11 ~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~ 89 (180)
T cd03214 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAH 89 (180)
T ss_pred CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHh
Confidence 35689999999 8899999999999999999999976532 22342211100 113455555677778877
Q ss_pred hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhcc
Q 003142 511 SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYS 587 (844)
Q Consensus 511 ~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~-~~a~~ 587 (844)
.+......+|+++ +++..+.+++.+|+++||||||+|+|+.....+. .++..+.++ +.+ +|++||+.++. .+|++
T Consensus 90 ~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~t-iii~sh~~~~~~~~~d~ 167 (180)
T cd03214 90 LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKT-VVMVLHDLNLAARYADR 167 (180)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCE
Confidence 7777778888766 4556666789999999999999999997777765 455666655 776 99999998876 78999
Q ss_pred ccceeeeEEE
Q 003142 588 NDFFENACME 597 (844)
Q Consensus 588 ~~~v~ng~v~ 597 (844)
+..+.+|++.
T Consensus 168 ~~~l~~g~i~ 177 (180)
T cd03214 168 VILLKDGRIV 177 (180)
T ss_pred EEEEECCEEE
Confidence 9999888875
No 34
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.83 E-value=3.4e-20 Score=186.54 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=113.0
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccc---------ccc----------cc---------cc
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI---------LSS----------EY---------AK 495 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~v---------pa~----------~~---------~~ 495 (844)
...|++|. .+|++++|.||||+||||+||+|+.+....+ |... |.. +. ..
T Consensus 17 AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~-G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEn 95 (245)
T COG4555 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS-GKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAREN 95 (245)
T ss_pred hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCC-ceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHH
Confidence 67899999 8999999999999999999999987665443 2110 000 00 01
Q ss_pred cchhHH---------------HhhhCCchhhHhhhhhhhhHHhhHHHH-HHHhCCCCcEEEEecCCCCCCHHHHHHHHHH
Q 003142 496 VPWFDS---------------VFADIGDEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGMS 559 (844)
Q Consensus 496 i~~~~~---------------i~~~ig~~q~i~~~lstfS~~~~rl~~-il~~a~~p~LLLLDEP~sGlDp~~~~al~~~ 559 (844)
+.||.. +...+++.+.+......||.+|++... +.+++.+|++++||||++|||......+ ..
T Consensus 96 l~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~-~d 174 (245)
T COG4555 96 LKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKF-HD 174 (245)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHH-HH
Confidence 112221 223345556666667788888866544 4567999999999999999999777665 46
Q ss_pred HHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 560 LLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 560 Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
++..+++.|.+ ||++||.++.. .+||+++.+.+|.+.+..
T Consensus 175 fi~q~k~egr~-viFSSH~m~EvealCDrvivlh~Gevv~~g 215 (245)
T COG4555 175 FIKQLKNEGRA-VIFSSHIMQEVEALCDRVIVLHKGEVVLEG 215 (245)
T ss_pred HHHHhhcCCcE-EEEecccHHHHHHhhheEEEEecCcEEEcC
Confidence 67778888997 99999997655 599999999999998754
No 35
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.83 E-value=3e-20 Score=193.28 Aligned_cols=150 Identities=19% Similarity=0.232 Sum_probs=110.3
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccc-------------------------ccccccc--
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-------------------------ILSSEYA-- 494 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~-------------------------vpa~~~~-- 494 (844)
..++.+++|. ..|++++|+||+||||||||++||++.-. ..|.. +.+ .+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p-t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ-~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP-TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQ-NFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEcCcCCHHHHHHHHHHhEEEECc-cCCCC
Confidence 3689999999 89999999999999999999999866433 11211 110 000
Q ss_pred -ccch---------------------hHHHhhhCCchhhHh-hhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 495 -KVPW---------------------FDSVFADIGDEQSLS-QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 495 -~i~~---------------------~~~i~~~ig~~q~i~-~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
.+.. ...++..+|..+... ...+.+||++ ||++.+.+++.+|+++|.||||.+||+
T Consensus 96 ~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~ 175 (226)
T COG1136 96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175 (226)
T ss_pred CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCCh
Confidence 0000 112233445555555 5567888755 556666788999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hcCCeEEEEEccchhHHhhhccccceeeeEE
Q 003142 551 LEGTALGMSLLEAFA-ESGSLLTIATTHHGELKTLKYSNDFFENACM 596 (844)
Q Consensus 551 ~~~~al~~~Ile~L~-~~g~t~vIitTHd~el~~~a~~~~~v~ng~v 596 (844)
..+..+.. ++..+. +.|+| +|++|||..++.+|++++.+.+|.+
T Consensus 176 ~t~~~V~~-ll~~~~~~~g~t-ii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 176 KTAKEVLE-LLRELNKERGKT-IIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHH-HHHHHHHhcCCE-EEEEcCCHHHHHhCCEEEEEeCCee
Confidence 88888875 455554 55887 9999999999999999999999984
No 36
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.82 E-value=4.7e-20 Score=201.70 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=111.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------ccccccccccc--cccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSGLHILSSEY--AKVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~G~~vpa~~~--~~i~~ 498 (844)
++.++++++|+ .+|++++|+||||||||||||+|+++.... ..| ++|.... ..+..
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~-~~~q~~~~~~~~tv 83 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIG-IVPQYASVDEDLTG 83 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcE-EecCCCCCCCCCcH
Confidence 45789999999 899999999999999999999997643211 111 2222100 00111
Q ss_pred ---------------------hHHHhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 499 ---------------------FDSVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 499 ---------------------~~~i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
+..++..++.........+++|+++++ +..+.+++.+|++|||||||+||||.....+
T Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 163 (302)
T TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163 (302)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 112233445554455566778887655 5666678999999999999999999777776
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 557 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 557 ~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|++.+.+
T Consensus 164 ~-~~l~~~~~~g~t-vi~~sH~~~~~~~~~d~v~~l~~G~i~~~g 206 (302)
T TIGR01188 164 W-DYIRALKEEGVT-ILLTTHYMEEADKLCDRIAIIDHGRIIAEG 206 (302)
T ss_pred H-HHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 5 566667767887 99999998766 689999999999987643
No 37
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.82 E-value=4.9e-20 Score=202.06 Aligned_cols=157 Identities=17% Similarity=0.134 Sum_probs=111.9
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------------------cccccccc--cccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVP 497 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------------------~~vpa~~~--~~i~ 497 (844)
++..++++++|+ ..|++++|+||||||||||+|+|+++.... .| .++|.... ..+.
T Consensus 18 ~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~-~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 18 GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD-AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 346799999999 889999999999999999999997653211 11 12232110 0011
Q ss_pred hhH---------------------HHhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 498 WFD---------------------SVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 498 ~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
..+ .++..++.........+.+|+++++ +..+.+++.+|++|||||||+||||.....
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~ 176 (306)
T PRK13537 97 VRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL 176 (306)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHH
Confidence 111 1122333333344455678887754 556667899999999999999999977777
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 556 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 556 l~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+. .++..+.+.|.| ||++||+++.. .+|+++..+.+|++.+.+
T Consensus 177 l~-~~l~~l~~~g~t-ill~sH~l~e~~~~~d~i~il~~G~i~~~g 220 (306)
T PRK13537 177 MW-ERLRSLLARGKT-ILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220 (306)
T ss_pred HH-HHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 65 566667777887 99999998766 689999999999998764
No 38
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=7.5e-20 Score=189.63 Aligned_cols=154 Identities=19% Similarity=0.171 Sum_probs=107.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------cccccccc--cccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEY--AKVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~~--~~i~~~ 499 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ....+.
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-DSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 35689999999 88999999999999999999999765321 111 12222100 001111
Q ss_pred H---------------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 500 D---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 500 ~---------------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
+ .++..++...........+|++++ ++..+.+++.+|+++||||||+|||+.....+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~ 170 (213)
T cd03259 91 ENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170 (213)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 1 122333444444455567787664 556666789999999999999999998777776
Q ss_pred HHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 558 MSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 558 ~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
. ++..+.+ .|.+ ||++||+.++. .+|+++..+.+|.+..
T Consensus 171 ~-~l~~~~~~~~~t-ii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 171 E-ELKELQRELGIT-TIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred H-HHHHHHHHcCCE-EEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 4 5555554 4776 99999998764 6899999999998754
No 39
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.82 E-value=6.2e-20 Score=203.89 Aligned_cols=158 Identities=16% Similarity=0.104 Sum_probs=112.1
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-------------------cccccccccc--cccch
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------------------SGLHILSSEY--AKVPW 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-------------------~G~~vpa~~~--~~i~~ 498 (844)
+++.++++++|+ ..|++++|+||||||||||||+|+++..... .-.++|.... ..+..
T Consensus 52 ~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 131 (340)
T PRK13536 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTV 131 (340)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcH
Confidence 456799999999 8899999999999999999999976532110 0012222100 01111
Q ss_pred hH---------------------HHhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 499 FD---------------------SVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 499 ~~---------------------~i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
.+ .++..++..+.......++|++|++ +..+.+++.+|++|||||||+||||.....+
T Consensus 132 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l 211 (340)
T PRK13536 132 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 211 (340)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 11 1222333333344455678887755 5556678999999999999999999887777
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 557 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 557 ~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|++.+++
T Consensus 212 ~-~~l~~l~~~g~t-ilisSH~l~e~~~~~d~i~il~~G~i~~~g 254 (340)
T PRK13536 212 W-ERLRSLLARGKT-ILLTTHFMEEAERLCDRLCVLEAGRKIAEG 254 (340)
T ss_pred H-HHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 5 555666767887 99999998776 699999999999998765
No 40
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.82 E-value=7.8e-20 Score=190.03 Aligned_cols=150 Identities=18% Similarity=0.228 Sum_probs=104.7
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------------cccccccc--c
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY--A 494 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------------~~vpa~~~--~ 494 (844)
+.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... .
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC-CceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 5789999999 89999999999999999999999754311 111 11221000 0
Q ss_pred ccch---------------------hHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 495 KVPW---------------------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 495 ~i~~---------------------~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
...+ +..++..+|..........++|+++ +++..+.+++.+|++|||||||+|||+..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 175 (218)
T cd03255 96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175 (218)
T ss_pred CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence 0011 1122333444444455566788766 55666677899999999999999999977
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeE
Q 003142 553 GTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENAC 595 (844)
Q Consensus 553 ~~al~~~Ile~L~~-~g~t~vIitTHd~el~~~a~~~~~v~ng~ 595 (844)
...+. .++..+.+ .|.+ ||++||+.+...+|+++..+.+|.
T Consensus 176 ~~~l~-~~l~~~~~~~~~t-ii~~sH~~~~~~~~d~v~~l~~G~ 217 (218)
T cd03255 176 GKEVM-ELLRELNKEAGTT-IVVVTHDPELAEYADRIIELRDGK 217 (218)
T ss_pred HHHHH-HHHHHHHHhcCCe-EEEEECCHHHHhhhcEEEEeeCCc
Confidence 77765 45556655 5787 999999988777888888887765
No 41
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.6e-19 Score=186.07 Aligned_cols=161 Identities=18% Similarity=0.195 Sum_probs=121.0
Q ss_pred cCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH------------------------Hhhcccccc------
Q 003142 440 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV------------------------MMAKSGLHI------ 488 (844)
Q Consensus 440 ~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~------------------------~~~q~G~~v------ 488 (844)
++++.++.+++|. +.|++++|+||+|||||||||+|.++. +-.++|+..
T Consensus 14 p~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv 93 (258)
T COG3638 14 PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV 93 (258)
T ss_pred CCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcc
Confidence 3678899999999 999999999999999999999996431 112333211
Q ss_pred ccc---------cccccchhH---------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEec
Q 003142 489 LSS---------EYAKVPWFD---------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDE 543 (844)
Q Consensus 489 pa~---------~~~~i~~~~---------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDE 543 (844)
|.. .-...+.+. ..+..+|..+...+..+++||++ ||+..+.+++.+|+++|-||
T Consensus 94 ~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADE 173 (258)
T COG3638 94 PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE 173 (258)
T ss_pred cccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCC
Confidence 100 000111111 13456677777778888999865 45555567899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEecc
Q 003142 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 601 (844)
Q Consensus 544 P~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~~ 601 (844)
|+++|||.....++..+.+.-.+.|.| +|++.|+.+++ .||++++++.+|++.||+.
T Consensus 174 PvasLDp~~a~~Vm~~l~~in~~~g~T-vi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~ 231 (258)
T COG3638 174 PVASLDPESAKKVMDILKDINQEDGIT-VIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231 (258)
T ss_pred cccccChhhHHHHHHHHHHHHHHcCCE-EEEEechHHHHHHHHhhheEecCCcEEEeCC
Confidence 999999988888876555554566887 99999999998 6999999999999999874
No 42
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2e-19 Score=189.40 Aligned_cols=156 Identities=19% Similarity=0.272 Sum_probs=108.2
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------cccccccc--c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--A 494 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~--~ 494 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... .
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-DSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 45689999999 89999999999999999999999764321 111 12222100 0
Q ss_pred ccchhHH----------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 495 KVPWFDS----------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 495 ~i~~~~~----------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
...+.+. ++..++..+......+.+|+++ +++..+.+++.+|++|||||||+|||+.
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 170 (235)
T cd03261 91 SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170 (235)
T ss_pred CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 0111111 1222333333444556788766 4556666789999999999999999997
Q ss_pred HHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 552 EGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 552 ~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
....+. .++..+.+ .|.| ||++||+.++. .+|+++..+.+|.+..+.
T Consensus 171 ~~~~l~-~~l~~~~~~~~~t-vi~vsH~~~~~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 171 ASGVID-DLIRSLKKELGLT-SIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred HHHHHH-HHHHHHHHhcCcE-EEEEecCHHHHHHhcCEEEEEECCeEEEec
Confidence 777765 45555655 4787 99999998765 689999999999987543
No 43
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.81 E-value=1e-19 Score=187.72 Aligned_cols=151 Identities=19% Similarity=0.209 Sum_probs=105.7
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------cccccccc---cccchhH
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------LHILSSEY---AKVPWFD 500 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------~~vpa~~~---~~i~~~~ 500 (844)
+.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ....+.+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE-SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 5689999999 88999999999999999999999765321 111 12222110 0011111
Q ss_pred -----------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHH
Q 003142 501 -----------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 562 (844)
Q Consensus 501 -----------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile 562 (844)
.++..++..+........+|++++ ++..+.+++.+|++|||||||+|||+.....+. .++.
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l~ 170 (205)
T cd03226 92 ELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG-ELIR 170 (205)
T ss_pred HHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH-HHHH
Confidence 222333444444445567787664 556666788999999999999999997777765 5666
Q ss_pred HHHhcCCeEEEEEccchhHH-hhhccccceeeeEE
Q 003142 563 AFAESGSLLTIATTHHGELK-TLKYSNDFFENACM 596 (844)
Q Consensus 563 ~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v 596 (844)
.+.+.|.+ +|++||+.+.. .+|+++..+.+|++
T Consensus 171 ~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 171 ELAAQGKA-VIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred HHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 66666887 99999998766 58999988888875
No 44
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.5e-19 Score=188.49 Aligned_cols=155 Identities=18% Similarity=0.240 Sum_probs=108.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------------------cccccccc--cccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------------------~~vpa~~~--~~i~~ 498 (844)
++.++++++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... .....
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP-TSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEecCcChHHHhhcEEEecCCccccccCcH
Confidence 45689999999 88999999999999999999999765321 111 12222110 00111
Q ss_pred hH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 499 FD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 499 ~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
.+ .++..++...........+|+++ +++..+.+++.+|+++||||||+|+|+.....+
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l 170 (220)
T cd03265 91 WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 11 12233444444445566788765 556666788999999999999999999777777
Q ss_pred HHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 557 GMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 557 ~~~Ile~L~~~-g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.. ++..+.+. |.+ +|++||+.+.. .+|+++..+.+|.+...
T Consensus 171 ~~-~l~~~~~~~~~t-vi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 171 WE-YIEKLKEEFGMT-ILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred HH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 64 55555554 787 99999998766 68999999999998654
No 45
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.4e-19 Score=188.78 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=106.6
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------cccccccc--cccchhH---
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------LHILSSEY--AKVPWFD--- 500 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------~~vpa~~~--~~i~~~~--- 500 (844)
+.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ......+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 95 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-TSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVA 95 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECccccCcEEEEecccccccCCCHHHHHH
Confidence 5689999999 88999999999999999999999765321 112 12222100 0011111
Q ss_pred ------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHH
Q 003142 501 ------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 561 (844)
Q Consensus 501 ------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Il 561 (844)
.++..++..+......+.+|+++ +++..+.+++.+|+++||||||+|||+.....+.. ++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~-~l 174 (220)
T cd03293 96 LGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQE-EL 174 (220)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHH-HH
Confidence 12233444444445556788766 55666667899999999999999999988877765 44
Q ss_pred HHHH-hcCCeEEEEEccchhH-Hhhhcccccee--eeEEEE
Q 003142 562 EAFA-ESGSLLTIATTHHGEL-KTLKYSNDFFE--NACMEF 598 (844)
Q Consensus 562 e~L~-~~g~t~vIitTHd~el-~~~a~~~~~v~--ng~v~f 598 (844)
..+. +.|.+ ||++||+.+. ..+|+++..+. +|.+..
T Consensus 175 ~~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 175 LDIWRETGKT-VLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred HHHHHHcCCE-EEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 4554 45776 9999999875 46899998888 688754
No 46
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.81 E-value=2e-19 Score=192.59 Aligned_cols=157 Identities=15% Similarity=0.142 Sum_probs=110.9
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------cccccccc--cccchh--
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------LHILSSEY--AKVPWF-- 499 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------~~vpa~~~--~~i~~~-- 499 (844)
+++.++.+++|. .+|++++|+||||||||||||+|+++... ..| .+++.... ......
T Consensus 23 ~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p-~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~en 101 (257)
T PRK11247 23 GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP-SAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDN 101 (257)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHH
Confidence 345789999999 88999999999999999999999765321 111 12222100 000111
Q ss_pred -------------HHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHH-
Q 003142 500 -------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF- 564 (844)
Q Consensus 500 -------------~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L- 564 (844)
..++..++.........+.+|++++ ++..+.+++.+|+++||||||+|||+.....+.. ++..+
T Consensus 102 l~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~ 180 (257)
T PRK11247 102 VGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQD-LIESLW 180 (257)
T ss_pred HHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHH
Confidence 1233445555555566677888665 5566667899999999999999999977777765 44454
Q ss_pred HhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 565 AESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 565 ~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
.+.+.+ ||++||+.++. .+|+++..+.+|.+..+.
T Consensus 181 ~~~~~t-viivsHd~~~~~~~~d~i~~l~~G~i~~~~ 216 (257)
T PRK11247 181 QQHGFT-VLLVTHDVSEAVAMADRVLLIEEGKIGLDL 216 (257)
T ss_pred HHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 445787 99999998765 689999999999987643
No 47
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.81 E-value=1.2e-19 Score=188.22 Aligned_cols=156 Identities=21% Similarity=0.263 Sum_probs=114.8
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH----------------------------hhccccccccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM----------------------------MAKSGLHILSS 491 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~----------------------------~~q~G~~vpa~ 491 (844)
+++.+.++++|+ .+|++++++||+||||||+||+|..+.- ..|.|+|..-.
T Consensus 12 ~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~T 91 (309)
T COG1125 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLT 91 (309)
T ss_pred CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCcc
Confidence 467899999999 9999999999999999999999953321 11223221100
Q ss_pred --cc-cccc------------hhHHHhhhCCch--hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 492 --EY-AKVP------------WFDSVFADIGDE--QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 492 --~~-~~i~------------~~~~i~~~ig~~--q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
++ +.++ -.+.++..+|.+ +......+.+||++ ||+..+.+++.+|+++||||||+++||..+
T Consensus 92 v~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R 171 (309)
T COG1125 92 VAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITR 171 (309)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhH
Confidence 00 0000 012344455553 46677788889865 556666788999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEE
Q 003142 554 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 597 (844)
Q Consensus 554 ~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~ 597 (844)
..+-..+.+.-++.|.| ||+||||.+.+ .+++++..+..|.+.
T Consensus 172 ~~lQ~e~~~lq~~l~kT-ivfVTHDidEA~kLadri~vm~~G~i~ 215 (309)
T COG1125 172 KQLQEEIKELQKELGKT-IVFVTHDIDEALKLADRIAVMDAGEIV 215 (309)
T ss_pred HHHHHHHHHHHHHhCCE-EEEEecCHHHHHhhhceEEEecCCeEE
Confidence 99877777665667887 99999998766 799999888888875
No 48
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.81 E-value=1.4e-19 Score=187.96 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=104.6
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------cccccccc--cc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--AK 495 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~--~~ 495 (844)
+.+..+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ..
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP-TRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSD 94 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEehhhcChhHHHHHHHhceEEecCcccccc
Confidence 4689999999 89999999999999999999999764311 111 12222100 00
Q ss_pred cchhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 496 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 496 i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
..+.+ .++..++...........+|+++ +++..+.+++.+|++|||||||+|||+...
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 174 (216)
T TIGR00960 95 RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS 174 (216)
T ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 11111 12233444444445556778765 556666778999999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeE
Q 003142 554 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENAC 595 (844)
Q Consensus 554 ~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~ 595 (844)
..+.. ++..+.+.|.+ ||++||+.++. .+|+++..+.+|.
T Consensus 175 ~~l~~-~l~~~~~~~~t-ii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 175 RDIMR-LFEEFNRRGTT-VLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred HHHHH-HHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 77764 55566666887 99999998776 5888888887765
No 49
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.81 E-value=1.4e-19 Score=198.04 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=110.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------------------ccccccccc--ccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEYA--KVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------------------~~vpa~~~~--~i~~ 498 (844)
+..++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|..... ....
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (303)
T TIGR01288 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP-DRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV 94 (303)
T ss_pred CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcH
Confidence 45689999999 88999999999999999999999765321 111 122221100 0111
Q ss_pred hHH---------------------HhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 499 FDS---------------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 499 ~~~---------------------i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
.+. ++..++..+........+|++++ ++..+.+++.+|++|||||||+||||.....+
T Consensus 95 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 174 (303)
T TIGR01288 95 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 174 (303)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 111 12233343344455567888765 45666678999999999999999999777776
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 557 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 557 ~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|++..++
T Consensus 175 ~-~~l~~~~~~g~t-il~~sH~~~~~~~~~d~i~~l~~G~i~~~g 217 (303)
T TIGR01288 175 W-ERLRSLLARGKT-ILLTTHFMEEAERLCDRLCVLESGRKIAEG 217 (303)
T ss_pred H-HHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 5 455666667887 99999998776 689999999999987653
No 50
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.81 E-value=1.3e-19 Score=180.68 Aligned_cols=131 Identities=31% Similarity=0.465 Sum_probs=98.7
Q ss_pred cceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhc----------cccccccccccccchhHHHhhhCCchhhHh
Q 003142 444 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------SGLHILSSEYAKVPWFDSVFADIGDEQSLS 513 (844)
Q Consensus 444 ~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q----------~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~ 513 (844)
.+++++.+..+ ++++|||||||||||+|++++.+..+++ .|.++|+ ....+ ++..++
T Consensus 11 ~~~~~i~~~~~-~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~-----i~~~~~------ 77 (162)
T cd03227 11 FVPNDVTFGEG-SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAA-VSAEL-----IFTRLQ------ 77 (162)
T ss_pred EeccEEecCCC-CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCccee-eEEEE-----ehheee------
Confidence 47788888754 6899999999999999999999998888 7777776 32222 233322
Q ss_pred hhhhhhhHHhhHHHHHHHhCC--CCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003142 514 QSLSTFSGHLKQIGNIISQST--SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591 (844)
Q Consensus 514 ~~lstfS~~~~rl~~il~~a~--~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v 591 (844)
+|....++..+..++.... +|+++|||||++||||.++..+...+.+.+.+ +++ +|++||+.++..++++...+
T Consensus 78 --lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~-vii~TH~~~~~~~~d~~~~l 153 (162)
T cd03227 78 --LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQ-VIVITHLPELAELADKLIHI 153 (162)
T ss_pred --ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCE-EEEEcCCHHHHHhhhhEEEE
Confidence 3333333444445554443 89999999999999999999999888877666 776 99999999999888766554
No 51
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.81 E-value=1.7e-19 Score=187.94 Aligned_cols=152 Identities=17% Similarity=0.141 Sum_probs=104.7
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh------------------------cccccccccccc--c
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA------------------------KSGLHILSSEYA--K 495 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~------------------------q~G~~vpa~~~~--~ 495 (844)
..++.+++|+ .+|++++|+||||||||||||+|+++.... +.-.+++..... .
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 4689999999 889999999999999999999997542110 001122221000 0
Q ss_pred cchhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 496 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 496 i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
....+ .++..++..........++|+++ +++..+.+++.+|++|||||||+|||+...
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 177 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177 (221)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence 11111 12233444444455556788766 456666678999999999999999999777
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEE
Q 003142 554 TALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACM 596 (844)
Q Consensus 554 ~al~~~Ile~L~~-~g~t~vIitTHd~el~~~a~~~~~v~ng~v 596 (844)
..+.. ++..+.+ .|.| +|++||+.++...++++..+.+|.+
T Consensus 178 ~~l~~-~l~~~~~~~~~t-ii~~tH~~~~~~~~d~v~~l~~G~i 219 (221)
T TIGR02211 178 KIIFD-LMLELNRELNTS-FLVVTHDLELAKKLDRVLEMKDGQL 219 (221)
T ss_pred HHHHH-HHHHHHHhcCCE-EEEEeCCHHHHhhcCEEEEEeCCEe
Confidence 77764 5555654 4776 9999999988877888878877765
No 52
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.81 E-value=2.3e-19 Score=185.84 Aligned_cols=154 Identities=17% Similarity=0.169 Sum_probs=107.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------cccccccc--cccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEY--AKVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~~--~~i~~~ 499 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ....+.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-TSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 45689999999 89999999999999999999999765321 111 12222100 001111
Q ss_pred H---------------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 500 D---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 500 ~---------------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
+ .++..++...........+|++++ ++..+.+++.+|+++||||||+|+|+.....+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~ 170 (213)
T cd03301 91 DNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170 (213)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 1 123334444444555567887665 456666789999999999999999998877776
Q ss_pred HHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 558 MSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 558 ~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
. ++..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+..
T Consensus 171 ~-~l~~~~~~~~~t-vi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 171 A-ELKRLQQRLGTT-TIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred H-HHHHHHHHcCCE-EEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 5 5555554 4787 99999998765 6899998888888753
No 53
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.81 E-value=2.7e-19 Score=184.84 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=109.4
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------ccccccccc--ccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~~~--~i~~~ 499 (844)
+..++++++|+ ..|++++|+||||||||||||+|+++... ..| .++|..... ...+.
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-DSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 45799999999 89999999999999999999999765321 111 122221100 01111
Q ss_pred H-----------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHH
Q 003142 500 D-----------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 561 (844)
Q Consensus 500 ~-----------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Il 561 (844)
+ .++..++...........+|+++ +++..+.+++.+|+++||||||+|||+.....+. .++
T Consensus 91 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l 169 (208)
T cd03268 91 ENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR-ELI 169 (208)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH-HHH
Confidence 1 12333444444555566778766 4566667789999999999999999997777775 455
Q ss_pred HHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 562 EAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 562 e~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
..+.+.|.+ +|++||+.++. .+|+++..+.+|++..
T Consensus 170 ~~~~~~~~t-ii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 170 LSLRDQGIT-VLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HHHHHCCCE-EEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 666667787 99999998876 5899999999988753
No 54
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.80 E-value=1.7e-19 Score=180.00 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=100.4
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccc-cccchhHHHhhhCCchhhHhhhhhhh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY-AKVPWFDSVFADIGDEQSLSQSLSTF 519 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~-~~i~~~~~i~~~ig~~q~i~~~lstf 519 (844)
++.+..+++|. .+|++++|+||||+||||||++|+++... ..|........ ......+.....++. ...+
T Consensus 12 ~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~~i~~-------~~qL 83 (163)
T cd03216 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKEVSFASPRDARRAGIAM-------VYQL 83 (163)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCcCCHHHHHhcCeEE-------EEec
Confidence 45689999999 89999999999999999999999654321 22221111000 000000000011111 1127
Q ss_pred hHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhH-HhhhccccceeeeEEE
Q 003142 520 SGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL-KTLKYSNDFFENACME 597 (844)
Q Consensus 520 S~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el-~~~a~~~~~v~ng~v~ 597 (844)
|+++ +++..+.+++.+|+++||||||+|||+.....+. .++..+.+.+.| +|++||+.+. ..+|+++..+.+|++.
T Consensus 84 S~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~t-iii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-KVIRRLRAQGVA-VIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 7655 5566667789999999999999999997777775 455566666887 9999999875 4689999999888875
Q ss_pred E
Q 003142 598 F 598 (844)
Q Consensus 598 f 598 (844)
+
T Consensus 162 ~ 162 (163)
T cd03216 162 G 162 (163)
T ss_pred e
Confidence 3
No 55
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.80 E-value=1.6e-19 Score=186.82 Aligned_cols=149 Identities=24% Similarity=0.257 Sum_probs=103.5
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------cccccccc---cccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKVP 497 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~---~~i~ 497 (844)
+.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ....
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 5689999999 88999999999999999999999764321 111 12222110 0011
Q ss_pred hhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 498 WFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 498 ~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
..+ .++..++....+....+.+|+++ +++..+.+++.+|+++||||||+|||+.....
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 172 (211)
T cd03225 93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172 (211)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 111 12233444444455566788766 55666667899999999999999999977777
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeee
Q 003142 556 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENA 594 (844)
Q Consensus 556 l~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng 594 (844)
+.. ++..+.+.|.+ +|++||+.+.. .+|+++..+.+|
T Consensus 173 ~~~-~l~~~~~~~~t-vi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 173 LLE-LLKKLKAEGKT-IIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred HHH-HHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEeCC
Confidence 764 55556666887 99999998776 578888777665
No 56
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.3e-19 Score=184.45 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=107.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-----------------cccccccc--cccchhH-
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------LHILSSEY--AKVPWFD- 500 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-----------------~~vpa~~~--~~i~~~~- 500 (844)
++.++.+++|+ .+|++++|+|||||||||||++|+++... ..| .++|.... ......+
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 90 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-DSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQ 90 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHH
Confidence 45689999999 89999999999999999999999765321 111 12222110 0011111
Q ss_pred --------------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHH
Q 003142 501 --------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 559 (844)
Q Consensus 501 --------------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~ 559 (844)
+++..++...........+|++++ ++..+.+++.+|+++||||||+|+|+.....+..
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~- 169 (210)
T cd03269 91 LVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKD- 169 (210)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-
Confidence 122333444444445566787665 4566667899999999999999999977777754
Q ss_pred HHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 560 LLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 560 Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
++..+.+.+.+ +|++||+.+.. .+|+++..+.+|.+..
T Consensus 170 ~l~~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 170 VIRELARAGKT-VILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred HHHHHHHCCCE-EEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 55566666776 99999998766 6899999998888753
No 57
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.80 E-value=3.2e-19 Score=188.51 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=106.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------cccccccc--c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--A 494 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~--~ 494 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... .
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP-SSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 45689999999 88999999999999999999999754311 111 12222100 0
Q ss_pred ccchhHH-----------------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 495 KVPWFDS-----------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 495 ~i~~~~~-----------------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
.....+. ++..++...........+|+++ +++..+.+++.+|++||||||
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 172 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEP 172 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 0111111 1223344444444556678766 556666678999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 545 GAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
|+|+|+.....+. .++..+.+ .|.+ +|++||+.++. .+|+++..+.+|.+..
T Consensus 173 t~~LD~~~~~~l~-~~l~~~~~~~~~t-iii~tH~~~~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 173 IASLDPKTSKQVM-DYLKRINKEDGIT-VIINLHQVDLAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred cccCCHHHHHHHH-HHHHHHHHHcCCE-EEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 9999997777765 45555554 4776 99999998876 6899999998988864
No 58
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.5e-19 Score=187.84 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=106.2
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------cccccccc--cc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--AK 495 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~--~~ 495 (844)
+.+..+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ..
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP-TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 5689999999 89999999999999999999999765321 111 12222100 00
Q ss_pred cchhHH-----------------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 496 VPWFDS-----------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 496 i~~~~~-----------------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
..+.+. ++..++...........+|+++ +++..+.+++.+|++|||||||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 172 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 111111 1222333333334445677765 5566666789999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHHh-hhccccceeeeEEEEe
Q 003142 546 AGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 599 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~~-~a~~~~~v~ng~v~fd 599 (844)
+|||+.....+.. ++..+.+ .|.+ ||++||+.+... +|+++..+.+|.+...
T Consensus 173 ~~LD~~~~~~l~~-~l~~~~~~~~~t-ii~~tH~~~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 173 ASLDPASSRQVMD-LLKRINREEGIT-VIVSLHQVDLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred ccCCHHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999977777754 5555654 4787 999999987775 8999999999988643
No 59
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.80 E-value=3.1e-19 Score=187.34 Aligned_cols=155 Identities=16% Similarity=0.196 Sum_probs=107.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------cccccccc--ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~~--~~i 496 (844)
++.++.+++|. .+|++++|+||||||||||||+|+++... ..| .++|.... ...
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (232)
T cd03218 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP-DSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL 90 (232)
T ss_pred CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccCCHhHHHhccEEEecCCccccccC
Confidence 45689999999 88999999999999999999999765321 111 11222100 001
Q ss_pred chhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHH
Q 003142 497 PWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 554 (844)
Q Consensus 497 ~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~ 554 (844)
.+.+ .++..++...........+|+++ +++..+.+++.+|++|||||||+|||+....
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 170 (232)
T cd03218 91 TVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQ 170 (232)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 1111 11222333333344456677766 5566667789999999999999999997777
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccchh-HHhhhccccceeeeEEEEe
Q 003142 555 ALGMSLLEAFAESGSLLTIATTHHGE-LKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 555 al~~~Ile~L~~~g~t~vIitTHd~e-l~~~a~~~~~v~ng~v~fd 599 (844)
.+. .++..+.+.|.| +|++||+.+ +..+|+++..+.+|++...
T Consensus 171 ~~~-~~l~~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (232)
T cd03218 171 DIQ-KIIKILKDRGIG-VLITDHNVRETLSITDRAYIIYEGKVLAE 214 (232)
T ss_pred HHH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCeEEEE
Confidence 765 456666667887 999999985 5578999999999988643
No 60
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.80 E-value=2.7e-19 Score=185.46 Aligned_cols=150 Identities=21% Similarity=0.234 Sum_probs=102.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------ccccccccc--
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEYA-- 494 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~~-- 494 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.....
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 35689999999 88999999999999999999999765321 111 122221000
Q ss_pred ccchhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 495 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 495 ~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
.....+ .++..++..+........+|+++ +++..+.+++.+|+++||||||+|+|+..
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 172 (214)
T TIGR02673 93 DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL 172 (214)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHH
Confidence 011111 12233344444444556788765 55666667899999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeee
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENA 594 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng 594 (844)
...+.. ++..+.+.|.+ +|++||+.+.. .+|+++..+.+|
T Consensus 173 ~~~l~~-~l~~~~~~~~t-ii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 173 SERILD-LLKRLNKRGTT-VIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHH-HHHHHHHcCCE-EEEEeCCHHHHHHhcCEEEEecCC
Confidence 777764 55556666887 99999998766 578888777665
No 61
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.80 E-value=4.1e-19 Score=187.25 Aligned_cols=155 Identities=16% Similarity=0.203 Sum_probs=108.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------------------cccccccc--cccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------------------~~vpa~~~--~~i~~ 498 (844)
++.++.+++|+ .+|++++|+|||||||||||++|+++... ..| .++|.... ....+
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA-QEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 45789999999 88999999999999999999999765321 111 12222100 00111
Q ss_pred hH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 499 FD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 499 ~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
.+ .++..+|...........+|+++ +++..+.+++.+|+++||||||+|+|+.....+
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l 171 (236)
T TIGR03864 92 RQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171 (236)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 11 12223344444445556778765 556667788999999999999999999888877
Q ss_pred HHHHHHHHH-hcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 557 GMSLLEAFA-ESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 557 ~~~Ile~L~-~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
.. ++..+. +.|.+ +|++||+.+....|+++..+.+|.+..+
T Consensus 172 ~~-~l~~~~~~~~~t-iii~sH~~~~~~~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 172 VA-HVRALCRDQGLS-VLWATHLVDEIEADDRLVVLHRGRVLAD 213 (236)
T ss_pred HH-HHHHHHHhCCCE-EEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence 65 455555 35787 9999999988777999999999988654
No 62
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.80 E-value=4.3e-19 Score=186.70 Aligned_cols=155 Identities=19% Similarity=0.237 Sum_probs=107.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------cccccccc--ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~~--~~i 496 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ...
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP-TSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 45688999999 88999999999999999999999765321 111 12222100 000
Q ss_pred chhH-------------------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 497 PWFD-------------------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 497 ~~~~-------------------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
.+.+ .++..++.........+++|+++ +++..+.+++.+|+++|||||
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 170 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEP 170 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1111 11222333333344556678766 455666678999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|+|+|+.....+.. ++..+.+.|.| +|++||+.++. .+|+++..+.+|.+...
T Consensus 171 t~~LD~~~~~~l~~-~l~~~~~~~~t-ii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 171 AAGLNPEETEELAE-LIRELRERGIT-VLLVEHDMDVVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred cccCCHHHHHHHHH-HHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEeCCEEEee
Confidence 99999977777654 55566667887 99999998776 68999999999998654
No 63
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.1e-19 Score=188.48 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=107.4
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------ccccccccc--ccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~~~--~i~~~ 499 (844)
++.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|..... ...+.
T Consensus 14 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-DSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 45789999999 88999999999999999999999765321 111 122221000 01111
Q ss_pred H-------------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 500 D-------------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 500 ~-------------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
+ .++..++..........++|+++ +++..+.+++.+|++|||||||+|+|+...
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 172 (239)
T cd03296 93 DNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 172 (239)
T ss_pred HHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 1 11223333333444556677765 556666678899999999999999999777
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEEccchhH-HhhhccccceeeeEEEEe
Q 003142 554 TALGMSLLEAFAES-GSLLTIATTHHGEL-KTLKYSNDFFENACMEFD 599 (844)
Q Consensus 554 ~al~~~Ile~L~~~-g~t~vIitTHd~el-~~~a~~~~~v~ng~v~fd 599 (844)
..+. .++..+.+. |.| ||++||+.+. ..+|+++..+.+|.+...
T Consensus 173 ~~l~-~~l~~~~~~~~~t-vii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 173 KELR-RWLRRLHDELHVT-TVFVTHDQEEALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred HHHH-HHHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 7775 455566554 777 9999999876 468999999999988654
No 64
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.80 E-value=4.4e-19 Score=183.74 Aligned_cols=150 Identities=17% Similarity=0.190 Sum_probs=103.4
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------cccccccc--cc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--AK 495 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~--~~ 495 (844)
+.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ..
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-TSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 5689999999 89999999999999999999999765311 111 12222100 00
Q ss_pred cchhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 496 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 496 i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
....+ .++..++...........+|+++ +++..+.+++.+|+++||||||+|+|+...
T Consensus 93 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 172 (214)
T cd03292 93 RNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTT 172 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 01111 12233344444444556778766 456666678999999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeE
Q 003142 554 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENAC 595 (844)
Q Consensus 554 ~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~ 595 (844)
..+.. ++..+.+.|.+ +|++||+.+.. .+|+++..+.+|.
T Consensus 173 ~~~~~-~l~~~~~~~~t-iiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 173 WEIMN-LLKKINKAGTT-VVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred HHHHH-HHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 77654 55556666887 99999998776 4788888877765
No 65
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.6e-19 Score=187.03 Aligned_cols=153 Identities=17% Similarity=0.199 Sum_probs=107.5
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------ccccccccc--cc
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEYA--KV 496 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~~--~i 496 (844)
.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|..... ..
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 789999999 88999999999999999999999754321 111 122221100 01
Q ss_pred chhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHH
Q 003142 497 PWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 554 (844)
Q Consensus 497 ~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~ 554 (844)
.+.+ .++..++.........+.+|+++ +++..+.+++.+|++|||||||+|||+....
T Consensus 98 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 177 (233)
T cd03258 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177 (233)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHH
Confidence 1111 12233344444445566788766 5566666789999999999999999997777
Q ss_pred HHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 555 ALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 555 al~~~Ile~L~~~-g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.+.. ++..+.+. |.+ ||++||+.+.. .+|+++..+.+|++...
T Consensus 178 ~l~~-~l~~~~~~~~~t-vii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 178 SILA-LLRDINRELGLT-IVLITHEMEVVKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred HHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 7754 55555554 786 99999998775 68999999999998654
No 66
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=4.6e-19 Score=186.50 Aligned_cols=153 Identities=18% Similarity=0.197 Sum_probs=105.0
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------------cccccccc--c
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY--A 494 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------------~~vpa~~~--~ 494 (844)
..++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... .
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCC
Confidence 4689999999 88999999999999999999999765311 111 12222100 0
Q ss_pred ccchhH---------------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 495 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 495 ~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
.....+ .++..+|...........+|++++ ++..+.+++.+|+++||||||+|||+..
T Consensus 101 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~ 180 (233)
T PRK11629 101 DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180 (233)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 001111 122333443334444566787664 4566667899999999999999999977
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 553 GTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 553 ~~al~~~Ile~L~~-~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
...+. .++..+.. .|.+ ||++||+.+....++++..+.+|++..
T Consensus 181 ~~~l~-~~l~~~~~~~g~t-vii~sH~~~~~~~~~~~~~l~~G~i~~ 225 (233)
T PRK11629 181 ADSIF-QLLGELNRLQGTA-FLVVTHDLQLAKRMSRQLEMRDGRLTA 225 (233)
T ss_pred HHHHH-HHHHHHHHhCCCE-EEEEeCCHHHHHhhCEEEEEECCEEEE
Confidence 77765 55566654 5787 999999998877667777778888754
No 67
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=2.8e-19 Score=183.00 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=107.2
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH-hhcccccccccc------ccccchhH---HHhhhCCchhh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-MAKSGLHILSSE------YAKVPWFD---SVFADIGDEQS 511 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~-~~q~G~~vpa~~------~~~i~~~~---~i~~~ig~~q~ 511 (844)
+.+.++++|. .+|++++|+||||||||||||+|++... .+..|....... ...+.+.. .++..+...++
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~ 99 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREA 99 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHH
Confidence 5689999999 8899999999999999999999976532 123342211100 01122211 12333344454
Q ss_pred Hhhhh--hhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhH--Hhhhc
Q 003142 512 LSQSL--STFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL--KTLKY 586 (844)
Q Consensus 512 i~~~l--stfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el--~~~a~ 586 (844)
+.... ..+|+++ +++..+.+++.+|+++|||||++|+|+.....+. .++..+.+.|.| +|++||+.+. ..+|+
T Consensus 100 l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~-~~l~~~~~~~~t-iiivtH~~~~~~~~~~d 177 (192)
T cd03232 100 LRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV-RFLKKLADSGQA-ILCTIHQPSASIFEKFD 177 (192)
T ss_pred HHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHH-HHHHHHHHcCCE-EEEEEcCChHHHHhhCC
Confidence 43321 2678765 5566666789999999999999999997777765 556667667887 9999999863 57899
Q ss_pred cccceee-eEEEE
Q 003142 587 SNDFFEN-ACMEF 598 (844)
Q Consensus 587 ~~~~v~n-g~v~f 598 (844)
++..+.+ |.+.+
T Consensus 178 ~i~~l~~~g~i~~ 190 (192)
T cd03232 178 RLLLLKRGGKTVY 190 (192)
T ss_pred EEEEEcCCCeEEe
Confidence 9888888 88765
No 68
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.80 E-value=1.3e-19 Score=183.44 Aligned_cols=148 Identities=18% Similarity=0.143 Sum_probs=105.4
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccc-----ccccccccchh--HHHhhhCCchh-hH
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI-----LSSEYAKVPWF--DSVFADIGDEQ-SL 512 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~v-----pa~~~~~i~~~--~~i~~~ig~~q-~i 512 (844)
...++.+++|+ .+|++++|+||||||||||||++.. ..|... +......+.++ .+.+..++... .+
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~ 81 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTL 81 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCcccc
Confidence 45789999999 8899999999999999999998831 122111 11001112222 23456666654 35
Q ss_pred hhhhhhhhHHhh-HHHHHHHhCCC--CcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003142 513 SQSLSTFSGHLK-QIGNIISQSTS--QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589 (844)
Q Consensus 513 ~~~lstfS~~~~-rl~~il~~a~~--p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~ 589 (844)
......+|++++ ++..+.+++.+ |+++|||||++|+|+.....+.. ++..+.+.|.+ ||++||+.++..+|+++.
T Consensus 82 ~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~-~l~~~~~~g~t-vIivSH~~~~~~~~d~i~ 159 (176)
T cd03238 82 GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDLGNT-VILIEHNLDVLSSADWII 159 (176)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHhCCCE-EEEEeCCHHHHHhCCEEE
Confidence 666778887664 45556677888 99999999999999987777765 45555667887 999999998888888877
Q ss_pred ceeeeEE
Q 003142 590 FFENACM 596 (844)
Q Consensus 590 ~v~ng~v 596 (844)
.+.+|..
T Consensus 160 ~l~~g~~ 166 (176)
T cd03238 160 DFGPGSG 166 (176)
T ss_pred EECCCCC
Confidence 7755544
No 69
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.79 E-value=1.7e-19 Score=181.56 Aligned_cols=146 Identities=18% Similarity=0.197 Sum_probs=100.0
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccccccc----------ccccchhHHHhhhCCchhh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE----------YAKVPWFDSVFADIGDEQS 511 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~----------~~~i~~~~~i~~~ig~~q~ 511 (844)
..+..++++. ..|++++|+||||+||||||++|+++... ..|....... ...+.++.+-...+. .+
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~--~t 91 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS--GS 91 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEEcccCCHHHHHhheEEECCCCcccc--Cc
Confidence 4588999999 88999999999999999999999765432 2232111000 001111111100011 13
Q ss_pred HhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccc
Q 003142 512 LSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590 (844)
Q Consensus 512 i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~ 590 (844)
+..++ +|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++..+.+.|.+ +|++||+.++..+|+++..
T Consensus 92 v~~~l--LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~~~~~~t-ii~~sh~~~~~~~~d~v~~ 167 (173)
T cd03246 92 IAENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ-AIAALKAAGAT-RIVIAHRPETLASADRILV 167 (173)
T ss_pred HHHHC--cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHH-HHHHHHhCCCE-EEEEeCCHHHHHhCCEEEE
Confidence 33333 67655 55666677899999999999999999987777754 55666666887 9999999988888888877
Q ss_pred eeeeE
Q 003142 591 FENAC 595 (844)
Q Consensus 591 v~ng~ 595 (844)
+.+|.
T Consensus 168 l~~G~ 172 (173)
T cd03246 168 LEDGR 172 (173)
T ss_pred EECCC
Confidence 77664
No 70
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.79 E-value=4e-19 Score=194.38 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=110.5
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------------------cccccccc--cccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVP 497 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------------------~~vpa~~~--~~i~ 497 (844)
+++.++++++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ..+.
T Consensus 13 ~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~-~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 13 GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP-DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 346799999999 99999999999999999999999765321 111 12222110 0011
Q ss_pred hh---------------------HHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 498 WF---------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 498 ~~---------------------~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
.. ..++..+|.........+.+|++++ ++..+.+++.+|+++||||||+||||.....
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~ 171 (301)
T TIGR03522 92 VREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVE 171 (301)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 11 1122334444445556677887765 4566667899999999999999999977776
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 556 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 556 l~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+. .++..+.+ +.| ||++||+++.. .+|+++..+.+|++.+.+
T Consensus 172 l~-~~l~~~~~-~~t-iii~sH~l~~~~~~~d~i~~l~~G~i~~~g 214 (301)
T TIGR03522 172 IR-NVIKNIGK-DKT-IILSTHIMQEVEAICDRVIIINKGKIVADK 214 (301)
T ss_pred HH-HHHHHhcC-CCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 65 45566654 676 99999998754 799999999999998654
No 71
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=6.2e-19 Score=188.45 Aligned_cols=155 Identities=21% Similarity=0.227 Sum_probs=107.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------cccccccc--cccchhH--
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------LHILSSEY--AKVPWFD-- 500 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------~~vpa~~~--~~i~~~~-- 500 (844)
++.++.+++|. .+|++++|+||||||||||||+|+++... ..| .+++.... ....+.+
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l 91 (255)
T PRK11248 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY-QHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNV 91 (255)
T ss_pred CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHH
Confidence 45689999999 88999999999999999999999765321 111 11222100 0011111
Q ss_pred -------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHH
Q 003142 501 -------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560 (844)
Q Consensus 501 -------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~I 560 (844)
.++..++...........+|+++ +++..+.+++.+|++|||||||+|||+.....+.. +
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~ 170 (255)
T PRK11248 92 AFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQT-L 170 (255)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH-H
Confidence 12333444444445566788766 45666667899999999999999999977777754 5
Q ss_pred HHHH-HhcCCeEEEEEccchhHH-hhhcccccee--eeEEEEe
Q 003142 561 LEAF-AESGSLLTIATTHHGELK-TLKYSNDFFE--NACMEFD 599 (844)
Q Consensus 561 le~L-~~~g~t~vIitTHd~el~-~~a~~~~~v~--ng~v~fd 599 (844)
+..+ .+.|.+ ||++||+.++. .+|+++..+. +|.+..+
T Consensus 171 L~~~~~~~g~t-viivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 171 LLKLWQETGKQ-VLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred HHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 5555 445787 99999998776 6899888887 4887543
No 72
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.79 E-value=6e-19 Score=183.39 Aligned_cols=152 Identities=17% Similarity=0.208 Sum_probs=107.7
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------------------cccccccc--cccchhH
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPWFD 500 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------------------~~vpa~~~--~~i~~~~ 500 (844)
.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... ......+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-DAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence 689999999 88999999999999999999999765321 111 12222100 0011111
Q ss_pred ---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHH
Q 003142 501 ---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558 (844)
Q Consensus 501 ---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~ 558 (844)
+++..++....+......+|+++ +++..+.+++.+|++|||||||+|+|+.....+.
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~- 176 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR- 176 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHH-
Confidence 12333444444555566777765 5566667789999999999999999997777775
Q ss_pred HHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 559 SLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 559 ~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
.++..+.+.|.| +|++||+.+.. .+++++..+.+|.+..
T Consensus 177 ~~l~~~~~~~~t-ii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 177 EFIRQLRALGKC-ILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred HHHHHHHHCCCE-EEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 455566666887 99999998765 6899999999988754
No 73
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.79 E-value=4.8e-19 Score=185.48 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=105.0
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------------cccccccc--cc
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY--AK 495 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------------~~vpa~~~--~~ 495 (844)
.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... ..
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~ 102 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG-SSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT 102 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence 589999999 88999999999999999999999765311 111 12222100 00
Q ss_pred cchhHH---------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 496 VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 496 i~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
....+. ++..++....+......+|+++ +++..+.+++.+|++|||||||+|||+...
T Consensus 103 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~ 182 (228)
T PRK10584 103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182 (228)
T ss_pred cCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 111111 1223344444444556677765 556666678999999999999999999777
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEE
Q 003142 554 TALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACME 597 (844)
Q Consensus 554 ~al~~~Ile~L~~-~g~t~vIitTHd~el~~~a~~~~~v~ng~v~ 597 (844)
..+.. ++..+.. .|.+ ||++||+.++...|+++..+.+|.+.
T Consensus 183 ~~l~~-~l~~~~~~~~~t-ii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 183 DKIAD-LLFSLNREHGTT-LILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred HHHHH-HHHHHHHhcCCE-EEEEecCHHHHHhCCEEEEEECCEEE
Confidence 77654 5555544 4776 99999999888789888888888774
No 74
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=5.7e-19 Score=190.09 Aligned_cols=156 Identities=16% Similarity=0.155 Sum_probs=108.5
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------------ccccccccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEYA 494 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------------~~vpa~~~~ 494 (844)
++..++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|.....
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~-~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT-SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 456789999999 889999999999999999999997653211 11 112221000
Q ss_pred --ccchhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 495 --KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 495 --~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
...+.+ .++..++..+.+......+|+++ +++..+.+++.+|++|||||||+|||+
T Consensus 114 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~ 193 (269)
T cd03294 114 LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193 (269)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 011111 12233444444445556778765 556666778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 551 LEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.....+.. ++..+.. .|.+ +|++||+.+.. .+|+++..+.+|.+...
T Consensus 194 ~~~~~l~~-~l~~~~~~~g~t-iii~tH~~~~~~~~~d~v~~l~~G~i~~~ 242 (269)
T cd03294 194 LIRREMQD-ELLRLQAELQKT-IVFITHDLDEALRLGDRIAIMKDGRLVQV 242 (269)
T ss_pred HHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 77777764 5555544 4776 99999998765 68999999999988643
No 75
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.79 E-value=3.9e-19 Score=184.29 Aligned_cols=153 Identities=21% Similarity=0.229 Sum_probs=105.4
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh---------------cccccccccccc----ccchhH-
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA---------------KSGLHILSSEYA----KVPWFD- 500 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~---------------q~G~~vpa~~~~----~i~~~~- 500 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++.... +...++|..... .....+
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~ 90 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDV 90 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHH
Confidence 35689999999 899999999999999999999997653210 001122321100 011111
Q ss_pred ------------------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 501 ------------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 501 ------------------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
.++..++..+........+|++++ ++..+.+++.+|+++||||||+|||+.....
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 170 (213)
T cd03235 91 VLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQED 170 (213)
T ss_pred HHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 123334444444555667887664 5566667899999999999999999988887
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEE
Q 003142 556 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACM 596 (844)
Q Consensus 556 l~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v 596 (844)
+.. ++..+.+.|.| +|++||+.++. .+|+++..+.++.+
T Consensus 171 l~~-~l~~~~~~~~t-vi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 171 IYE-LLRELRREGMT-ILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred HHH-HHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 765 44555656787 99999998766 68898888876543
No 76
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.79 E-value=8.7e-19 Score=183.06 Aligned_cols=156 Identities=21% Similarity=0.274 Sum_probs=110.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc-----------------ccccccc--cccchhH-
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-----------------HILSSEY--AKVPWFD- 500 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~-----------------~vpa~~~--~~i~~~~- 500 (844)
++.++.+++|. .+|++++|+||||+||||||++|+++.. +..|. ++|.... ......+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~ 90 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-PTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTAREN 90 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEeccccccccEEEEcCCCCccccCCHHHH
Confidence 45789999999 8899999999999999999999976532 12221 2222110 0011111
Q ss_pred ----------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHH
Q 003142 501 ----------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 563 (844)
Q Consensus 501 ----------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~ 563 (844)
.++..++...........+|+++ +++..+.+++.+|+++||||||+|+|+.....+. .++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~L~~ 169 (223)
T TIGR03740 91 LKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR-ELIRS 169 (223)
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHH-HHHHH
Confidence 12333455555555666788765 5566667789999999999999999997777775 45556
Q ss_pred HHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 564 FAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 564 L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+.+.|.+ +|++||+.++. .+|+++..+.+|.+....
T Consensus 170 ~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~g~i~~~~ 206 (223)
T TIGR03740 170 FPEQGIT-VILSSHILSEVQQLADHIGIISEGVLGYQG 206 (223)
T ss_pred HHHCCCE-EEEEcCCHHHHHHhcCEEEEEeCCEEEEec
Confidence 6666887 99999998876 689999999999986543
No 77
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.79 E-value=8.2e-19 Score=185.20 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=107.1
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------------------ccccccccc---cc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEYA---KV 496 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------------------~~vpa~~~~---~i 496 (844)
+++.++.+++|. .+|++++|+||||||||||||+|+++.... .| .+++..... ..
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 110 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDL 110 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEccccchhhcccEEEEcCCccccCCCC
Confidence 456799999999 889999999999999999999997653211 11 122210100 01
Q ss_pred chhH---------------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHH
Q 003142 497 PWFD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGT 554 (844)
Q Consensus 497 ~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~ 554 (844)
...+ .++..++..+........+|++++ ++..+.+++.+|+++||||||+|||+....
T Consensus 111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 190 (236)
T cd03267 111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190 (236)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 1111 112223333334445566787665 456666789999999999999999998877
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 555 ALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 555 al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
.+.. ++..+.+ .+.| ||++||+.++. .+|+++..+.+|.+..
T Consensus 191 ~l~~-~l~~~~~~~~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 191 NIRN-FLKEYNRERGTT-VLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHH-HHHHHHhcCCCE-EEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 7765 5555554 4776 99999998865 6899999999988754
No 78
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.79 E-value=4.8e-19 Score=183.33 Aligned_cols=151 Identities=18% Similarity=0.256 Sum_probs=103.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-----------------------cccccccc--cc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY--AK 495 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-----------------------~~vpa~~~--~~ 495 (844)
++.+..+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ..
T Consensus 12 ~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP-DSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 35688899999 88999999999999999999999765321 111 12222100 00
Q ss_pred cchhH----------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 496 VPWFD----------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 496 i~~~~----------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
..+.+ .++..++....+.....++|+++ +++..+.+++.+|+++||||||+|+|+..
T Consensus 91 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 170 (213)
T cd03262 91 LTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPEL 170 (213)
T ss_pred CcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 11111 12223344444445556678766 45666667899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeE
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENAC 595 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~ 595 (844)
...+. .++..+.+.|.+ +|++||+.+.. .+|+++..+.+|.
T Consensus 171 ~~~l~-~~l~~~~~~~~t-vi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 171 VGEVL-DVMKDLAEEGMT-MVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred HHHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 77665 556666666787 99999998776 6899888877664
No 79
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=8.5e-19 Score=186.69 Aligned_cols=156 Identities=14% Similarity=0.188 Sum_probs=108.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccc-ccccccc--cccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGL-HILSSEY--AKVP 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~-~vpa~~~--~~i~ 497 (844)
++.++.+++|+ .+|++++|+|||||||||||++|+++..... .+. ++|.... ....
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (255)
T PRK11300 17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMT 96 (255)
T ss_pred CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCc
Confidence 46789999999 8899999999999999999999976532110 011 1222100 0011
Q ss_pred hhH------------------------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEE
Q 003142 498 WFD------------------------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVL 540 (844)
Q Consensus 498 ~~~------------------------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLL 540 (844)
+.+ .++..+|...........+|+++ +++..+.+++.+|++||
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 176 (255)
T PRK11300 97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM 176 (255)
T ss_pred HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 111 11223344444445556678765 55666677899999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 541 LDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 541 LDEP~sGlDp~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|||||+|||+.....+. .++..+.+. |.| ||++||+.+.. .+|+++..+.+|.+.+.
T Consensus 177 lDEPt~~LD~~~~~~l~-~~L~~~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 177 LDEPAAGLNPKETKELD-ELIAELRNEHNVT-VLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred EcCCccCCCHHHHHHHH-HHHHHHHhhcCCE-EEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 99999999997777775 555566654 786 99999998776 68999999999988643
No 80
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=7.9e-19 Score=189.53 Aligned_cols=156 Identities=14% Similarity=0.121 Sum_probs=110.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------cccccccc---ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKV 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~---~~i 496 (844)
+..++++++|. .+|++++|+|||||||||||++|+++... ..| .++|.... ...
T Consensus 17 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 17 GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP-QRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 35689999999 88999999999999999999999765321 111 12222110 001
Q ss_pred chhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHH
Q 003142 497 PWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 554 (844)
Q Consensus 497 ~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~ 554 (844)
.+.+ .++..++...........+|+++ +++..+.+++.+|++|||||||+|||+....
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~ 175 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQE 175 (274)
T ss_pred cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHH
Confidence 1111 12223344444444556778766 4566666789999999999999999998888
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 555 ALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 555 al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
.+. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+.++.
T Consensus 176 ~l~-~~l~~~~~~g~t-ili~tH~~~~~~~~~d~i~~l~~G~i~~~g 220 (274)
T PRK13647 176 TLM-EILDRLHNQGKT-VIVATHDVDLAAEWADQVIVLKEGRVLAEG 220 (274)
T ss_pred HHH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 775 455566666887 99999999876 699999999999987654
No 81
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.79 E-value=8.4e-19 Score=186.20 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=108.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-----------------------------cccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------------LHILSS 491 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-----------------------------~~vpa~ 491 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|..
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-EAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 45689999999 88999999999999999999999765311 111 122221
Q ss_pred ccc--ccchhHH----------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCC
Q 003142 492 EYA--KVPWFDS----------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 492 ~~~--~i~~~~~----------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~s 546 (844)
... .....+. ++..+|.........+.+|+++ +++..+.+++.+|++|||||||+
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~ 173 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTS 173 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 000 0111111 1222333333344556778765 55666677899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|||+.....+. .++..+.+.|.+ +|++||+.+.. .+|+++..+.+|.+..+
T Consensus 174 ~LD~~~~~~l~-~~l~~~~~~~~t-vi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 174 ALDPELVGEVL-NTIRQLAQEKRT-MVIVTHEMSFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred cCCHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99997777765 456666667887 99999998776 68999999999988654
No 82
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3e-19 Score=188.28 Aligned_cols=156 Identities=22% Similarity=0.241 Sum_probs=112.0
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccc-ccccc----------ccccc-------------
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-ILSSE----------YAKVP------------- 497 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~-vpa~~----------~~~i~------------- 497 (844)
..+..++++. ..|+.++|+||||||||||+++++++..... |.. +-... ...++
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~-G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS-GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC-CEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 5889999999 8899999999999999999999976543322 211 00000 00010
Q ss_pred -h---------------------hHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHH
Q 003142 498 -W---------------------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 554 (844)
Q Consensus 498 -~---------------------~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~ 554 (844)
+ ....+..+|..+.......++|+++ ||++.+..++.+|.+|||||||+||||....
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~ 175 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence 0 1123344555555666677788755 5566666678999999999999999997777
Q ss_pred HHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEecc
Q 003142 555 ALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 601 (844)
Q Consensus 555 al~~~Ile~L~~~-g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~~ 601 (844)
.+. .++..|... |.| +|++|||.+.. .+|+++..+.+|.+.++..
T Consensus 176 ~l~-~~l~~L~~~~~~t-ii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 176 ELL-ELLKKLKEEGGKT-IIIVTHDLELVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred HHH-HHHHHHHhcCCCe-EEEEeCcHHHHHhhCCEEEEEECCEEeecCC
Confidence 765 566777766 576 99999998777 5899999999999966553
No 83
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=7.3e-19 Score=195.73 Aligned_cols=155 Identities=13% Similarity=0.156 Sum_probs=108.9
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh-----------------------ccccccccccc--ccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-----------------------KSGLHILSSEY--AKV 496 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-----------------------q~G~~vpa~~~--~~i 496 (844)
..++.+++|+ ..|++++|+||||||||||||+|+++.... +.-.++|.... ...
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~ 97 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC
Confidence 5689999999 899999999999999999999997653211 00112222110 001
Q ss_pred chhH---------------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHH
Q 003142 497 PWFD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGT 554 (844)
Q Consensus 497 ~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~ 554 (844)
++.+ .++..+|.........+.+|++++ ++..+.+++.+|++|||||||+|||+....
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~ 177 (343)
T PRK11153 98 TVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 1111 123334444445556677887665 556666789999999999999999997777
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 555 ALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 555 al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.+.. ++..+.+ .|.| +|++||+.+.. .+|+++..+.+|.+..+
T Consensus 178 ~l~~-~L~~l~~~~g~t-iilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 178 SILE-LLKDINRELGLT-IVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred HHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 7754 5555554 4787 99999998775 68999999999998653
No 84
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=9e-19 Score=189.09 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=109.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------cccccccc---cc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY---AK 495 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~~---~~ 495 (844)
+..++.+++|+ .+|++++|+||||+|||||||+|+++... ..| .++|.... ..
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP-QKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 34589999999 89999999999999999999999765321 111 11222100 00
Q ss_pred cchhH---------------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 496 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 496 i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
..+.+ .++..++...........+|++++ ++..+.+++.+|++|||||||+|+|+...
T Consensus 93 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~ 172 (274)
T PRK13644 93 RTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172 (274)
T ss_pred chHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 11111 112233444444445566787664 55666678999999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 554 TALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 554 ~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
..+. .++..+.+.|.| ||++||+.+....|+++..+.+|.+...+
T Consensus 173 ~~l~-~~l~~l~~~g~t-il~~tH~~~~~~~~d~v~~l~~G~i~~~g 217 (274)
T PRK13644 173 IAVL-ERIKKLHEKGKT-IVYITHNLEELHDADRIIVMDRGKIVLEG 217 (274)
T ss_pred HHHH-HHHHHHHhCCCE-EEEEecCHHHHhhCCEEEEEECCEEEEEC
Confidence 7665 556666767887 99999998888889999999999987543
No 85
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=8.6e-19 Score=189.75 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=110.3
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccc---ccccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSE---YAKVP 497 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~---~~~i~ 497 (844)
+.++.+++|+ ..|++++|+||||+||||||++|+++... ..| .+++... .....
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP-EAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence 5689999999 88999999999999999999999765321 111 1222210 00011
Q ss_pred hh---------------------HHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 498 WF---------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 498 ~~---------------------~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
+. ..++..+|+...+...+..+|++++ ++..+.+++.+|+||||||||+|||+.....
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~ 178 (279)
T PRK13635 99 VQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178 (279)
T ss_pred HHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 11 1223334555555556667887664 5566667899999999999999999987777
Q ss_pred HHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 556 LGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 556 l~~~Ile~L~~~-g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
+. .++..+.+. |.| ||++||+.+....|+++..+.+|.+.+++
T Consensus 179 l~-~~l~~l~~~~~~t-ilivsH~~~~~~~~d~i~~l~~G~i~~~g 222 (279)
T PRK13635 179 VL-ETVRQLKEQKGIT-VLSITHDLDEAAQADRVIVMNKGEILEEG 222 (279)
T ss_pred HH-HHHHHHHHcCCCE-EEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 75 455566654 776 99999998888789999999999987654
No 86
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=8.2e-19 Score=190.66 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=109.7
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh----------------------ccccccccccc---ccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----------------------KSGLHILSSEY---AKV 496 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----------------------q~G~~vpa~~~---~~i 496 (844)
+.++.+++|+ ..|++++|+||||||||||||+|+++.... +...++|.... ...
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 4689999999 889999999999999999999997653110 00112333110 001
Q ss_pred chhH---------------------HHhhhCCch--hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 497 PWFD---------------------SVFADIGDE--QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 497 ~~~~---------------------~i~~~ig~~--q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
.+.+ .++..+|.. .........+|++++ ++..+.+++.+|++|||||||+|||+..
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 1111 123334443 234445667887664 5566667899999999999999999977
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 553 GTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 553 ~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
...+. .++..+.+ .|.| ||++||+.++. .+|+++..+.+|.+..+.
T Consensus 180 ~~~l~-~~l~~l~~~~g~t-vi~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 180 RDEIL-NKIKELHKEYNMT-IILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 77775 45556655 4787 99999998876 689999999999987654
No 87
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.79 E-value=8.2e-19 Score=183.88 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=107.8
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccc--------ccc---cccccchhH--------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI--------LSS---EYAKVPWFD-------- 500 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~v--------pa~---~~~~i~~~~-------- 500 (844)
+++.++.+++|+ ..|++++|+||||||||||+|+|+++... ..|... ... -....++.+
T Consensus 33 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~~ 111 (224)
T cd03220 33 GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-DSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRL 111 (224)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEchhhcccccCCCCCcHHHHHHHHHHH
Confidence 457799999999 89999999999999999999999765321 112100 000 000011111
Q ss_pred -------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 003142 501 -------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 566 (844)
Q Consensus 501 -------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~ 566 (844)
.++..++...........+|+++ +++..+.+++.+|+++||||||+|||+.....+.. ++..+.+
T Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~-~l~~~~~ 190 (224)
T cd03220 112 LGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQR-RLRELLK 190 (224)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh
Confidence 12223344444445566778765 45566677889999999999999999988777765 4455555
Q ss_pred cCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 567 SGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 567 ~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
.|.+ ||++||+.+.. .+|+++..+.+|++..
T Consensus 191 ~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 191 QGKT-VILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred CCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 6776 99999998766 6899999998888754
No 88
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=9.2e-19 Score=189.49 Aligned_cols=155 Identities=15% Similarity=0.139 Sum_probs=110.6
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------cccccccc---cccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKVP 497 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~---~~i~ 497 (844)
..++.+++|+ .+|++++|+||||||||||||+|+++.... .| .+++.... ....
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT 98 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccccc
Confidence 4589999999 899999999999999999999997653211 11 12222100 0001
Q ss_pred hh---------------------HHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 498 WF---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 498 ~~---------------------~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
+. ..++..+|..+........+|+++ +++..+.+++.+|++|||||||+|||+.....
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~ 178 (279)
T PRK13650 99 VEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE 178 (279)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 11 112333445444555566788765 56666778899999999999999999977777
Q ss_pred HHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 556 LGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 556 l~~~Ile~L~~-~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
+. .++..+.+ .|.| ||++||+.+...+|+++..+.+|++..++
T Consensus 179 l~-~~l~~l~~~~g~t-ilivtH~~~~~~~~dri~~l~~G~i~~~g 222 (279)
T PRK13650 179 LI-KTIKGIRDDYQMT-VISITHDLDEVALSDRVLVMKNGQVESTS 222 (279)
T ss_pred HH-HHHHHHHHhcCCE-EEEEecCHHHHHhCCEEEEEECCEEEEEC
Confidence 65 45556665 4887 99999998887889999999999987654
No 89
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.78 E-value=9.2e-19 Score=182.38 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=105.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------cccccccc--ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~~--~~i 496 (844)
++.+..+++|+ .+|++++|+|||||||||||++|+++... ..| .++|.... ...
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP-RSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 45689999999 89999999999999999999999765321 111 12222100 001
Q ss_pred chhHHH-------------------hhhC-CchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 497 PWFDSV-------------------FADI-GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 497 ~~~~~i-------------------~~~i-g~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
.+.+.+ +..+ +...........+|+++ +++..+.+++.+|+++||||||+|||+.....
T Consensus 91 t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 170 (222)
T cd03224 91 TVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 170 (222)
T ss_pred cHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHH
Confidence 111111 1111 11222233345677765 55666667899999999999999999977777
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhH-HhhhccccceeeeEEEEe
Q 003142 556 LGMSLLEAFAESGSLLTIATTHHGEL-KTLKYSNDFFENACMEFD 599 (844)
Q Consensus 556 l~~~Ile~L~~~g~t~vIitTHd~el-~~~a~~~~~v~ng~v~fd 599 (844)
+.. ++..+.+.|.| +|++||+.+. ..+|+++..+.+|++...
T Consensus 171 l~~-~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (222)
T cd03224 171 IFE-AIRELRDEGVT-ILLVEQNARFALEIADRAYVLERGRVVLE 213 (222)
T ss_pred HHH-HHHHHHHCCCE-EEEEeCCHHHHHHhccEEEEeeCCeEEEe
Confidence 754 55566667786 9999999876 478999999999988643
No 90
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.78 E-value=8.3e-19 Score=194.91 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=111.1
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-----------------------cccccccccc--ccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----------------------SGLHILSSEY--AKV 496 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-----------------------~G~~vpa~~~--~~i 496 (844)
..++.+++|+ .+|++++|+||||||||||||+|+++.-... .-.++|.... ...
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~ 97 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence 4689999999 8999999999999999999999975432110 0011222100 001
Q ss_pred chhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHH
Q 003142 497 PWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 554 (844)
Q Consensus 497 ~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~ 554 (844)
.+++ .++..+|..+......+.+|+++ +|+..+.+++.+|++|||||||+||||....
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~ 177 (343)
T TIGR02314 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 1111 22344555555566777888866 5566666789999999999999999998887
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 555 ALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 555 al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.+. .++..+.+ .|.| ||++||+++.. .+|+++..+.+|++...
T Consensus 178 ~i~-~lL~~l~~~~g~t-iiliTH~~~~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 178 SIL-ELLKEINRRLGLT-ILLITHEMDVVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred HHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 775 55566655 4887 99999998877 68999999999988643
No 91
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=8.9e-19 Score=195.83 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=111.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------ccccccc--ccccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSE--YAKVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~--~~~i~~~ 499 (844)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++++.. ...+.+.
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~-~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT-SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC-ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 45688999999 889999999999999999999997753221 11 0122100 0001111
Q ss_pred ---------------------HHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 500 ---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 500 ---------------------~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
..++..++..+.......++|+++ ||+..+.+++.+|++|||||||+|||+.....+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~ 174 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMR 174 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 122334455555556667788765 5667777889999999999999999998888876
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 558 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 558 ~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
..+.+...+.|.| +|++|||.+.+ .+|+++..+.+|++...+
T Consensus 175 ~~l~~l~~~~g~t-ii~vTHd~~ea~~l~D~i~vl~~G~i~~~g 217 (356)
T PRK11650 175 LEIQRLHRRLKTT-SLYVTHDQVEAMTLADRVVVMNGGVAEQIG 217 (356)
T ss_pred HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCEEEEEC
Confidence 5554433345887 99999997655 799999999999997543
No 92
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.78 E-value=7.6e-19 Score=198.76 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=113.2
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccc--cc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA--KV 496 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~--~i 496 (844)
+++.++++++|. ..|++++|+||||||||||||+|+++... ..| .++|..... .+
T Consensus 14 ~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p-~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP-TAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-CCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 456799999999 89999999999999999999999764321 111 122221000 01
Q ss_pred chh-------------------------HHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 497 PWF-------------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 497 ~~~-------------------------~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
+.. ...+..++..+........+|+++ +|+..+.+++.+|++|||||||+|||+
T Consensus 93 tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~ 172 (402)
T PRK09536 93 DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172 (402)
T ss_pred CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 111 122333444444555667788766 556666678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
.....+. .++..+.+.|.| ||++||+.++. .+|+++..+.+|++..+.
T Consensus 173 ~~~~~l~-~lL~~l~~~g~T-IIivsHdl~~~~~~adrii~l~~G~iv~~G 221 (402)
T PRK09536 173 NHQVRTL-ELVRRLVDDGKT-AVAAIHDLDLAARYCDELVLLADGRVRAAG 221 (402)
T ss_pred HHHHHHH-HHHHHHHhcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 8777775 566667767887 99999998887 699999999999987653
No 93
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=5e-19 Score=183.56 Aligned_cols=157 Identities=19% Similarity=0.211 Sum_probs=109.3
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccc---------cccc---------------cccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH---------ILSS---------------EYAK 495 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~---------vpa~---------------~~~~ 495 (844)
|+-.+.++++|+ ..|++++|+||||+||||++++|.++.... .|.. .|+. ....
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~-~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~ 93 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS-SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG 93 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC-CceEEECCcccCCCCHHHHHhccceeecccccccCC
Confidence 567799999999 999999999999999999999996543221 1110 0100 1111
Q ss_pred cchhHHHh---------------------------------hhCCchhhHhhhhhhhhH-HhhHHHHHHHhCCCCcEEEE
Q 003142 496 VPWFDSVF---------------------------------ADIGDEQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLL 541 (844)
Q Consensus 496 i~~~~~i~---------------------------------~~ig~~q~i~~~lstfS~-~~~rl~~il~~a~~p~LLLL 541 (844)
+++++++. ..+|..+......+.+|. +++++..+.+++.+|.||||
T Consensus 94 lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLL 173 (250)
T COG0411 94 LTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLL 173 (250)
T ss_pred CcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEe
Confidence 22222221 122222222233334555 44556666678999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 542 DEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 542 DEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
|||.+|++|.+...+.. ++..+.+ .|.| |+++-||+.+. .+|+++..+..|++.+++
T Consensus 174 DEPaAGln~~e~~~l~~-~i~~i~~~~g~t-illIEHdM~~Vm~l~dri~Vl~~G~~IAeG 232 (250)
T COG0411 174 DEPAAGLNPEETEELAE-LIRELRDRGGVT-ILLIEHDMKLVMGLADRIVVLNYGEVIAEG 232 (250)
T ss_pred cCccCCCCHHHHHHHHH-HHHHHHhcCCcE-EEEEEeccHHHhhhccEEEeccCCcCcccC
Confidence 99999999999999875 5566776 4576 99999999988 699999999889887655
No 94
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.78 E-value=6.6e-19 Score=181.39 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=109.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH-Hhhccccccc-cc---c-------ccccchhH---HHhhh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGLHIL-SS---E-------YAKVPWFD---SVFAD 505 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~-~~~q~G~~vp-a~---~-------~~~i~~~~---~i~~~ 505 (844)
++.+..+++|. .+|++++|+||||+|||||||+|++.. +.+..|...- .. . ...+.+.. ..+..
T Consensus 12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (200)
T cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPG 91 (200)
T ss_pred CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccC
Confidence 45689999999 889999999999999999999997763 2233332110 00 0 00122211 12222
Q ss_pred CCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-
Q 003142 506 IGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT- 583 (844)
Q Consensus 506 ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~- 583 (844)
+...+.+......+|+++ +++..+.+++.+|+++||||||+|+|+.....+. .++..+.+.+.| +|++||+.++..
T Consensus 92 ~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~L~~~~~~~~t-iii~sh~~~~~~~ 169 (200)
T cd03217 92 VKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVA-EVINKLREEGKS-VLIITHYQRLLDY 169 (200)
T ss_pred ccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHCCCE-EEEEecCHHHHHH
Confidence 333333333334677765 5566667789999999999999999997777775 455556666777 999999998886
Q ss_pred -hhccccceeeeEEEEec
Q 003142 584 -LKYSNDFFENACMEFDE 600 (844)
Q Consensus 584 -~a~~~~~v~ng~v~fd~ 600 (844)
+|+++..+.+|.+....
T Consensus 170 ~~~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 170 IKPDRVHVLYDGRIVKSG 187 (200)
T ss_pred hhCCEEEEEECCEEEEEc
Confidence 79999999999887543
No 95
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.78 E-value=1.1e-18 Score=187.91 Aligned_cols=156 Identities=17% Similarity=0.229 Sum_probs=107.0
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------cccccccc--
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY-- 493 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~-- 493 (844)
+++.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|....
T Consensus 18 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 18 GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP-DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 345789999999 88999999999999999999999765321 111 12222100
Q ss_pred cccchhHHH----------------------hhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 494 AKVPWFDSV----------------------FADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 494 ~~i~~~~~i----------------------~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
....+.+.+ +..++.........+.+|++++ ++..+.+++.+|++|||||||+|||+
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 176 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDP 176 (269)
T ss_pred CCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 001111111 2223333333444567887665 45556677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 551 LEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.....+.. ++..+.+. |.+ ||++||+.+.. .+|+++..+.+|.+.++
T Consensus 177 ~~~~~l~~-~l~~~~~~~g~t-iiivsH~~~~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 177 ITMGVLVK-LISELNSALGVT-CVVVSHDVPEVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred HHHHHHHH-HHHHHHHhcCcE-EEEEecCHHHHHHhhCEEEEEECCEEEEe
Confidence 77777764 55555544 776 99999997655 68999999999988754
No 96
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1e-18 Score=180.92 Aligned_cols=152 Identities=18% Similarity=0.230 Sum_probs=104.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------------------ccccccccc--ccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEYA--KVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------------------~~vpa~~~~--~i~~ 498 (844)
+..++++++|+ .+| +++|+|||||||||||++|+++... ..| .++|..... ...+
T Consensus 12 ~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP-SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 35688999999 677 9999999999999999999764321 111 122221100 0111
Q ss_pred hH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 499 FD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 499 ~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
.+ .++..++...........+|+++ +++..+.+++.+|+++||||||+|+|+.....+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l 169 (211)
T cd03264 90 REFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169 (211)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 11 12223344444444556677765 556666788999999999999999999777776
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 557 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 557 ~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
. .+++.+.+ +.| +|++||+.++. .+++++..+.+|.+..
T Consensus 170 ~-~~l~~~~~-~~t-ii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 170 R-NLLSELGE-DRI-VILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred H-HHHHHHhC-CCE-EEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 5 56666665 566 99999998876 5899999998888754
No 97
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=8.1e-19 Score=188.98 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=107.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-----------------------cccccccc---c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY---A 494 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-----------------------~~vpa~~~---~ 494 (844)
++.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... .
T Consensus 13 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP-QKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 45689999999 88999999999999999999999764321 111 12222110 0
Q ss_pred ccchhHH---------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 495 KVPWFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 495 ~i~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
...+.+. ++..++.........+.+|+++ +++..+.+++.+|++|||||||+|||+..
T Consensus 92 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~ 171 (271)
T PRK13638 92 YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAG 171 (271)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 0001111 1122233322333445677766 55666667899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
...+. .++..+.+.|.+ ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 172 ~~~l~-~~l~~~~~~g~t-ii~vtH~~~~~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 172 RTQMI-AIIRRIVAQGNH-VIISSHDIDLIYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HHHHH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 77775 455566666887 99999998876 689999999999987543
No 98
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.2e-18 Score=184.17 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=108.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------cccccccc--ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~~--~~i 496 (844)
++.++++++|+ .+|++++|+||||+|||||||+|+++... ..| .++|.... ...
T Consensus 15 ~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR-DAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 45789999999 89999999999999999999999765321 111 12222110 001
Q ss_pred chhHH----------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 497 PWFDS----------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 497 ~~~~~----------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
.+.+. ++..++...........+|+++ +++..+.+++.+|++|||||||+|+|+...
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (241)
T PRK10895 94 SVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISV 173 (241)
T ss_pred cHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 11111 1222233333334455677766 455666678999999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchh-HHhhhccccceeeeEEEEe
Q 003142 554 TALGMSLLEAFAESGSLLTIATTHHGE-LKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 554 ~al~~~Ile~L~~~g~t~vIitTHd~e-l~~~a~~~~~v~ng~v~fd 599 (844)
..+. .++..+.+.|.+ +|++||+.+ +..+|+++..+.+|.+.+.
T Consensus 174 ~~l~-~~l~~~~~~g~t-iii~sH~~~~~~~~~d~v~~l~~G~i~~~ 218 (241)
T PRK10895 174 IDIK-RIIEHLRDSGLG-VLITDHNVRETLAVCERAYIVSQGHLIAH 218 (241)
T ss_pred HHHH-HHHHHHHhcCCE-EEEEEcCHHHHHHhcCEEEEEeCCeEEee
Confidence 7665 566667777887 999999985 5579999999999998754
No 99
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.78 E-value=1.1e-18 Score=195.10 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=111.9
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh------------------------ccccccccccccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA------------------------KSGLHILSSEYAK 495 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~------------------------q~G~~vpa~~~~~ 495 (844)
+++.+.++++|+ ..|++++|+||||||||||||+|+++.... ....+++. ....
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q-~~~l 82 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ-QFAL 82 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC-CCcC
Confidence 356789999999 899999999999999999999997543210 00112222 1100
Q ss_pred ---cchh---------------------HHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 496 ---VPWF---------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 496 ---i~~~---------------------~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
..+. ..++..+|+..........+|++++ |+..+.+++.+|++|||||||+||||
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~ 162 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDP 162 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 1111 1233445555556667778888765 55666778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
.....+...+.+...+.|.| ||++|||.+.. .+|+++..+.+|.+..
T Consensus 163 ~~r~~l~~~l~~l~~~~~~T-ii~vTHd~~ea~~~~drI~vl~~G~iv~ 210 (363)
T TIGR01186 163 LIRDSMQDELKKLQATLQKT-IVFITHDLDEAIRIGDRIVIMKAGEIVQ 210 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCEEEe
Confidence 88888876555433345787 99999998765 7899999999998854
No 100
>PRK10908 cell division protein FtsE; Provisional
Probab=99.78 E-value=1e-18 Score=182.39 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=105.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------cccccccc--c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--A 494 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~--~ 494 (844)
++.++++++|. .+|++++|+||||||||||||+|+++... ..| .++|.... .
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP-SAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 35689999999 89999999999999999999999754321 111 12222100 0
Q ss_pred ccchhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 495 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 495 ~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
.....+ .++..++.........+.+|+++ +++..+.+++.+|+++||||||+|||+..
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (222)
T PRK10908 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172 (222)
T ss_pred cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence 001111 12233344334444556778766 45666667889999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEE
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 597 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~ 597 (844)
...+.. ++..+.+.+.+ +|++||+.++. .+|+++..+.+|.+.
T Consensus 173 ~~~l~~-~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 173 SEGILR-LFEEFNRVGVT-VLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHH-HHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 777754 55566666776 99999998776 578888888888763
No 101
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.78 E-value=1.1e-18 Score=181.74 Aligned_cols=153 Identities=21% Similarity=0.227 Sum_probs=107.3
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------------------cccccccc--cccchh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPWF 499 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------------------~~vpa~~~--~~i~~~ 499 (844)
+.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .+++.... ......
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP-TSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 5789999999 88999999999999999999999765321 111 11221100 000111
Q ss_pred ---------------------HHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 500 ---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 500 ---------------------~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
..++..++..+.......++|+++ +++..+.+++.+|+++||||||+|+|+.....+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~ 173 (220)
T cd03263 94 EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173 (220)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHH
Confidence 112333444444445556778765 5566666789999999999999999997777765
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 558 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 558 ~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.++..+.+ +.| +|++||+.++. .+|+++..+.+|++...
T Consensus 174 -~~l~~~~~-~~t-ii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 174 -DLILEVRK-GRS-IILTTHSMDEAEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred -HHHHHHhc-CCE-EEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 45555555 566 99999998876 58999999999988754
No 102
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.78 E-value=1.2e-18 Score=183.89 Aligned_cols=155 Identities=19% Similarity=0.268 Sum_probs=109.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-----------------------cccccccc--cc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY--AK 495 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-----------------------~~vpa~~~--~~ 495 (844)
++.++.+++|+ .+|++++|+||||+|||||||+|+++.. +..| .++|.... ..
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 45689999999 8899999999999999999999976531 1111 12222100 00
Q ss_pred cchhH----------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 496 VPWFD----------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 496 i~~~~----------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
..+.+ .++..+|.........+.+|+++ +++..+.+++.+|+++||||||+|+|+..
T Consensus 92 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~ 171 (240)
T PRK09493 92 LTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL 171 (240)
T ss_pred CcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 01111 12233444444455556788765 55666667889999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
...+.. ++..+.+.|.+ +|++||+.++. .+|+++..+.+|++...
T Consensus 172 ~~~l~~-~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (240)
T PRK09493 172 RHEVLK-VMQDLAEEGMT-MVIVTHEIGFAEKVASRLIFIDKGRIAED 217 (240)
T ss_pred HHHHHH-HHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 777764 55566666887 99999998876 58999999999998754
No 103
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=5.7e-19 Score=177.57 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=111.9
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh--------------------hcccc-cccccccc---c
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--------------------AKSGL-HILSSEYA---K 495 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~--------------------~q~G~-~vpa~~~~---~ 495 (844)
+++.|.++++|. ..|++++|.||||+||||.+-++.++... ++.|. |.|+ +.+ .
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQ-E~SIFr~ 93 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQ-EASIFRK 93 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccc-cchHhhc
Confidence 567899999999 99999999999999999999999544221 12221 3343 211 1
Q ss_pred cchhHHHh-----------------------hhCCchhhHhhhhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 496 VPWFDSVF-----------------------ADIGDEQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 496 i~~~~~i~-----------------------~~ig~~q~i~~~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
+++.+++. ..+.......+.-.++||+ .+|+..+.+++.+|+++||||||+|.||.
T Consensus 94 LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPi 173 (243)
T COG1137 94 LTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 173 (243)
T ss_pred CcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCch
Confidence 22222221 1122221112222345664 45566666789999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccc-hhHHhhhccccceeeeEEEEec
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHH-GELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd-~el~~~a~~~~~v~ng~v~fd~ 600 (844)
....+ ..|+.+|++.|.. |++|-|+ .+...+|++...+..|++.+.+
T Consensus 174 aV~dI-q~iI~~L~~rgiG-vLITDHNVREtL~i~dRaYIi~~G~vla~G 221 (243)
T COG1137 174 AVIDI-QRIIKHLKDRGIG-VLITDHNVRETLDICDRAYIISDGKVLAEG 221 (243)
T ss_pred hHHHH-HHHHHHHHhCCce-EEEccccHHHHHhhhheEEEEecCeEEecC
Confidence 88887 5788999999997 9999999 5667899999999999998755
No 104
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=4.8e-19 Score=179.03 Aligned_cols=149 Identities=15% Similarity=0.242 Sum_probs=98.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccc-cccc-----------ccccchhHHHhhhCCc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI-LSSE-----------YAKVPWFDSVFADIGD 508 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~v-pa~~-----------~~~i~~~~~i~~~ig~ 508 (844)
++.++.+++|+ .+|++++|+||||+|||||||+|+++.. +..|... .... ...+.+..+-. .+-.
T Consensus 12 ~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~-~~~~ 89 (178)
T cd03229 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDF-ALFP 89 (178)
T ss_pred CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccchhHHHHhhcEEEEecCC-ccCC
Confidence 35689999999 8899999999999999999999976532 2223211 1100 00111111100 0001
Q ss_pred hhhHhhhhhh-hhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEccchhHHh-h
Q 003142 509 EQSLSQSLST-FSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKT-L 584 (844)
Q Consensus 509 ~q~i~~~lst-fS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~~-~ 584 (844)
..++...+.. +|+++ +++..+.+++.+|+++||||||+|+|+.....+. .++..+.+. +.+ +|++||+.++.. +
T Consensus 90 ~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~-~~l~~~~~~~~~t-iii~sH~~~~~~~~ 167 (178)
T cd03229 90 HLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR-ALLKSLQAQLGIT-VVLVTHDLDEAARL 167 (178)
T ss_pred CCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHh
Confidence 1223333322 77655 5666777889999999999999999997777665 555566665 776 999999987775 7
Q ss_pred hccccceeee
Q 003142 585 KYSNDFFENA 594 (844)
Q Consensus 585 a~~~~~v~ng 594 (844)
|+++..+.+|
T Consensus 168 ~d~i~~l~~g 177 (178)
T cd03229 168 ADRVVVLRDG 177 (178)
T ss_pred cCEEEEEeCC
Confidence 8887777655
No 105
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.1e-18 Score=180.58 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=100.5
Q ss_pred EEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------ccccccccc--ccchhHH----
Q 003142 448 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWFDS---- 501 (844)
Q Consensus 448 disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~~~--~i~~~~~---- 501 (844)
+++|+ .+|++++|+||||||||||||+|+++... ..| .+++..... .....+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP-QSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcc
Confidence 77777 78899999999999999999999765321 111 122221000 0111111
Q ss_pred -----------------HhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHH
Q 003142 502 -----------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 563 (844)
Q Consensus 502 -----------------i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~ 563 (844)
++..++...........+|++++ ++..+.+++.+|+++||||||+|+|+.....+.. ++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~ 173 (211)
T cd03298 95 LSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLD-LVLD 173 (211)
T ss_pred cccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-HHHH
Confidence 22233333333444556787664 5566667789999999999999999988887765 4455
Q ss_pred HH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 564 FA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 564 L~-~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
+. +.|.+ +|++||+.++. .+|+++..+.+|.+..
T Consensus 174 ~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 174 LHAETKMT-VLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHHhcCCE-EEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 54 45787 99999998876 6899999999988753
No 106
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.78 E-value=9.6e-19 Score=184.00 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=102.8
Q ss_pred eEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------cccccccc--cccchhHH------
Q 003142 447 IDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------LHILSSEY--AKVPWFDS------ 501 (844)
Q Consensus 447 ~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------~~vpa~~~--~~i~~~~~------ 501 (844)
.+++|. .+|++++|+||||||||||+|+|+++... ..| .++|.... ......+.
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 456677 67899999999999999999999765321 112 12222100 00111111
Q ss_pred -----------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHH
Q 003142 502 -----------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 563 (844)
Q Consensus 502 -----------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~ 563 (844)
++..++.........+.+|+++ +++..+.+++.+|+++||||||+|||+.....+...+ ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l-~~ 159 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL-MQ 159 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH-HH
Confidence 2223344444445556778766 5566666789999999999999999998887776544 44
Q ss_pred HHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 564 FAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 564 L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+.+ .|.| ||++||+.+.. .+|+++..+.+|.+....
T Consensus 160 ~~~~~~~t-ii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 160 IWEEHRVT-VLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHhcCCE-EEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 544 4777 99999998765 689999999999987543
No 107
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.1e-18 Score=196.10 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=109.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------cccccccc--cccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEY--AKVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~~--~~i~~~ 499 (844)
++.++++++|+ ..|++++|+||||||||||||+|+++... ..| .++++... ..+.+.
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p-~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~ 93 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI-TSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHH
Confidence 45688999999 88999999999999999999999765321 111 12222100 001111
Q ss_pred H---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 500 D---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 500 ~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
+ .++..++..+.......++|+++ +++..+.+++.+|++|||||||+|||+.....+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~ 173 (369)
T PRK11000 94 ENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173 (369)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 1 12333444444455566788765 5566677889999999999999999998888776
Q ss_pred HHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 558 MSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 558 ~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.. +..+.. .|.| +|++|||.+.. .+|+++..+.+|.+...
T Consensus 174 ~~-L~~l~~~~g~t-vI~vTHd~~~~~~~~d~i~vl~~G~i~~~ 215 (369)
T PRK11000 174 IE-ISRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRVAQV 215 (369)
T ss_pred HH-HHHHHHHhCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 54 445544 5787 99999998755 68999999999998654
No 108
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.1e-18 Score=189.64 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=109.4
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc------------------------ccccccccc---cc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------------SGLHILSSE---YA 494 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q------------------------~G~~vpa~~---~~ 494 (844)
+.++.+++|+ .+|++++|+||||+|||||||+|+++..... ...++|... ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 4689999999 8999999999999999999999976522100 011222211 00
Q ss_pred ccchhHH---------------------HhhhCCch-hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 495 KVPWFDS---------------------VFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 495 ~i~~~~~---------------------i~~~ig~~-q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
...+.+. ++..++.. .........+|++++ ++..+.+++.+|++|||||||+|||+.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~ 179 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179 (287)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 0111111 12233443 233455567887665 556666789999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
....+. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+..+.
T Consensus 180 ~~~~l~-~~l~~l~~~g~t-vlivsH~~~~~~~~~d~v~~l~~G~i~~~g 227 (287)
T PRK13641 180 GRKEMM-QLFKDYQKAGHT-VILVTHNMDDVAEYADDVLVLEHGKLIKHA 227 (287)
T ss_pred HHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 777765 566667767887 99999998875 699999999999987543
No 109
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.78 E-value=1.2e-18 Score=182.75 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=104.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh---------------------cccccccccccc--ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA---------------------KSGLHILSSEYA--KVP 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~---------------------q~G~~vpa~~~~--~i~ 497 (844)
++.++++++|+ .+|++++|+||||||||||||+|+++.... +.-.++|..... ...
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLT 91 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCc
Confidence 45789999999 889999999999999999999997653211 001122321100 011
Q ss_pred hhHHH------------------hhhCC-chhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 498 WFDSV------------------FADIG-DEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 498 ~~~~i------------------~~~ig-~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
..+.+ ...++ ...........+|+++ +++..+.+++.+|+++||||||+|||+.....+.
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~ 171 (230)
T TIGR03410 92 VEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG 171 (230)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence 11111 11111 1122233445577765 5566666789999999999999999998877776
Q ss_pred HHHHHHHHh-cCCeEEEEEccchhHHh-hhccccceeeeEEEEe
Q 003142 558 MSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 599 (844)
Q Consensus 558 ~~Ile~L~~-~g~t~vIitTHd~el~~-~a~~~~~v~ng~v~fd 599 (844)
. ++..+.+ .+.| +|++||+.+... +|+++..+.+|.+...
T Consensus 172 ~-~l~~~~~~~~~t-ii~~sH~~~~~~~~~d~v~~l~~g~i~~~ 213 (230)
T TIGR03410 172 R-VIRRLRAEGGMA-ILLVEQYLDFARELADRYYVMERGRVVAS 213 (230)
T ss_pred H-HHHHHHHcCCcE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 4 5555655 4776 999999988764 8999999999988654
No 110
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.6e-18 Score=190.06 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=109.4
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------------------------
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------------------- 485 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------------------- 485 (844)
.++++++|. .+|++++|+||||||||||+|+|+++..... |
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT-GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC-cEEEEeceecccccccccccccccccccccccccccch
Confidence 589999999 8899999999999999999999976532111 1
Q ss_pred --------cccccccc-c--ccchh---------------------HHHhhhCCch-hhHhhhhhhhhHHhh-HHHHHHH
Q 003142 486 --------LHILSSEY-A--KVPWF---------------------DSVFADIGDE-QSLSQSLSTFSGHLK-QIGNIIS 531 (844)
Q Consensus 486 --------~~vpa~~~-~--~i~~~---------------------~~i~~~ig~~-q~i~~~lstfS~~~~-rl~~il~ 531 (844)
.+++.... . ...+. ..++..+|.. ........++|++++ ++..+.+
T Consensus 100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a 179 (305)
T PRK13651 100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI 179 (305)
T ss_pred HHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 12222100 0 00111 1123334443 344555667887665 5566667
Q ss_pred hCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 532 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 532 ~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
++.+|++|||||||+|||+.....+. .++..+.+.|.| ||++|||.++. .+|+++..+.+|.+..+.
T Consensus 180 L~~~P~lLlLDEPt~~LD~~~~~~l~-~~l~~l~~~g~t-iiivtHd~~~~~~~adrv~vl~~G~i~~~g 247 (305)
T PRK13651 180 LAMEPDFLVFDEPTAGLDPQGVKEIL-EIFDNLNKQGKT-IILVTHDLDNVLEWTKRTIFFKDGKIIKDG 247 (305)
T ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCE-EEEEeeCHHHHHHhCCEEEEEECCEEEEEC
Confidence 89999999999999999997766665 566677777887 99999998765 799999999999987654
No 111
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.8e-18 Score=182.96 Aligned_cols=156 Identities=20% Similarity=0.257 Sum_probs=108.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------------cccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------------LHILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------------~~vpa~~~ 493 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|....
T Consensus 14 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 45689999999 89999999999999999999999765311 111 12222100
Q ss_pred --cccchhHHH----------------------hhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCC
Q 003142 494 --AKVPWFDSV----------------------FADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGT 548 (844)
Q Consensus 494 --~~i~~~~~i----------------------~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGl 548 (844)
....+.+.+ +..+|....+......+|+++ +++..+.+++.+|+++||||||+|+
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~L 172 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcC
Confidence 001111111 222333333444456677765 5566667789999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 549 Dp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
|+.....+. .++..+.+.|.| +|++||+.+.. .+|+++..+.+|.+..+.
T Consensus 173 D~~~~~~l~-~~l~~~~~~~~t-ii~~sh~~~~~~~~~d~i~~l~~g~i~~~~ 223 (242)
T PRK11124 173 DPEITAQIV-SIIRELAETGIT-QVIVTHEVEVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred CHHHHHHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 997777665 566666667887 99999998776 689999999999987543
No 112
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.2e-18 Score=183.56 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=105.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------cccccccc--ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~~--~~i 496 (844)
++.++++++|. .+|++++|+||||||||||||+|+++... ..| .++|.... ...
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA-TSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 45789999999 89999999999999999999999754321 111 12222100 001
Q ss_pred chhHHH-------------------hhhC-CchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 497 PWFDSV-------------------FADI-GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 497 ~~~~~i-------------------~~~i-g~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
.+.+.+ +..+ +..+........+|+++ +++..+.+++.+|+++||||||+|+|+.....
T Consensus 96 tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~ 175 (237)
T PRK11614 96 TVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ 175 (237)
T ss_pred cHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHH
Confidence 111111 1111 12222233445577655 55666667899999999999999999977776
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchh-HHhhhccccceeeeEEEEe
Q 003142 556 LGMSLLEAFAESGSLLTIATTHHGE-LKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 556 l~~~Ile~L~~~g~t~vIitTHd~e-l~~~a~~~~~v~ng~v~fd 599 (844)
+. .++..+.+.|.| +|++||+.+ +..+|+++..+.+|.+...
T Consensus 176 l~-~~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (237)
T PRK11614 176 IF-DTIEQLREQGMT-IFLVEQNANQALKLADRGYVLENGHVVLE 218 (237)
T ss_pred HH-HHHHHHHHCCCE-EEEEeCcHHHHHhhCCEEEEEeCCEEEee
Confidence 65 455666767887 999999976 5579999999999988654
No 113
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=6.3e-19 Score=177.39 Aligned_cols=145 Identities=19% Similarity=0.269 Sum_probs=99.3
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccccccc---------ccccchhHH---HhhhCCch
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE---------YAKVPWFDS---VFADIGDE 509 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~---------~~~i~~~~~---i~~~ig~~ 509 (844)
..++++++|+ .+|++++|+||||||||||||+|+++... ..|....... ...+.+..+ ++......
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR 91 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHH
Confidence 4689999999 88999999999999999999999765322 2232111000 011122111 11112222
Q ss_pred hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhcc
Q 003142 510 QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYS 587 (844)
Q Consensus 510 q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~-~a~~ 587 (844)
+++ . +|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++..+.++|.+ +|++||+.++.. +|++
T Consensus 92 ~~~----~-LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~g~t-iii~th~~~~~~~~~d~ 164 (173)
T cd03230 92 ENL----K-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE-LLRELKKEGKT-ILLSSHILEEAERLCDR 164 (173)
T ss_pred HHh----h-cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHCCCE-EEEECCCHHHHHHhCCE
Confidence 222 2 67655 56667778899999999999999999988777764 55566666776 999999987764 8888
Q ss_pred ccceeeeE
Q 003142 588 NDFFENAC 595 (844)
Q Consensus 588 ~~~v~ng~ 595 (844)
+..+.+|.
T Consensus 165 i~~l~~g~ 172 (173)
T cd03230 165 VAILNNGR 172 (173)
T ss_pred EEEEeCCC
Confidence 87777664
No 114
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.78 E-value=4.9e-19 Score=177.24 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=97.5
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHH--hhhCCchhhHhh-hhhh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSV--FADIGDEQSLSQ-SLST 518 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i--~~~ig~~q~i~~-~lst 518 (844)
+.++.+++|+ .+|++++|+||||||||||+++|+++... ..|..... ....+.++.+- +......+++.. ....
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~-~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~ 91 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMP-EGEDLLFLPQRPYLPLGTLREQLIYPWDDV 91 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEEC-CCceEEEECCCCccccccHHHHhhccCCCC
Confidence 4688999999 88999999999999999999999765322 22321111 11122222111 112233444432 3466
Q ss_pred hhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceee
Q 003142 519 FSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 593 (844)
Q Consensus 519 fS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~n 593 (844)
+|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++..+ +.| +|++||+.++..+|+++..+.+
T Consensus 92 LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~~---~~t-iiivsh~~~~~~~~d~i~~l~~ 162 (166)
T cd03223 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ-LLKEL---GIT-VISVGHRPSLWKFHDRVLDLDG 162 (166)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHH-HHHHh---CCE-EEEEeCChhHHhhCCEEEEEcC
Confidence 78765 55666677899999999999999999977666654 33333 576 9999999888778887766654
No 115
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.78 E-value=9.2e-19 Score=179.57 Aligned_cols=154 Identities=17% Similarity=0.224 Sum_probs=106.2
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH-hhccccccc-cc------cccccchhH---HHhhhCCchh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-MAKSGLHIL-SS------EYAKVPWFD---SVFADIGDEQ 510 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~-~~q~G~~vp-a~------~~~~i~~~~---~i~~~ig~~q 510 (844)
+.++++++|. .+|++++|+||||+|||||||+|+++.. .+..|...- .. ....+.++. .++..+...+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 101 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRE 101 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHH
Confidence 5789999999 8899999999999999999999977641 222232110 00 001122211 1222233444
Q ss_pred hHhhhh--hhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchh--HHhhh
Q 003142 511 SLSQSL--STFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE--LKTLK 585 (844)
Q Consensus 511 ~i~~~l--stfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~e--l~~~a 585 (844)
++.... ..+|+++ +++..+.+++.+|+++||||||+|||+.....+. .++..+.+.|.| +|++||+.+ ...+|
T Consensus 102 ~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~~~~t-iii~sh~~~~~~~~~~ 179 (194)
T cd03213 102 TLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM-SLLRRLADTGRT-IICSIHQPSSEIFELF 179 (194)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHhCCCE-EEEEecCchHHHHHhc
Confidence 443222 1577655 5566667789999999999999999997777765 555666666887 999999975 45689
Q ss_pred ccccceeeeEEEE
Q 003142 586 YSNDFFENACMEF 598 (844)
Q Consensus 586 ~~~~~v~ng~v~f 598 (844)
+++..+.+|++..
T Consensus 180 d~v~~l~~G~i~~ 192 (194)
T cd03213 180 DKLLLLSQGRVIY 192 (194)
T ss_pred CEEEEEeCCEEEe
Confidence 9999999988753
No 116
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.78 E-value=1.8e-18 Score=181.05 Aligned_cols=155 Identities=14% Similarity=0.184 Sum_probs=107.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH----hhcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM----MAKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~----~~q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++.. .+..|. ++|....
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 91 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence 45789999999 8899999999999999999999987751 122221 1222100
Q ss_pred c-ccchhHH----------------------HhhhCCchhhHhhh--hhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCC
Q 003142 494 A-KVPWFDS----------------------VFADIGDEQSLSQS--LSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAG 547 (844)
Q Consensus 494 ~-~i~~~~~----------------------i~~~ig~~q~i~~~--lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sG 547 (844)
. ...+.+. ++..++........ ...+|++++ ++..+.+++.+|+++||||||+|
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 171 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 0 0011111 12223333333333 267887664 55666678999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 548 lDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
||+.....+. .++..+.+. .+ ||++||+.+.. .+|+++..+.+|.+...
T Consensus 172 LD~~~~~~l~-~~l~~~~~~-~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 172 LDPISTAKIE-ELIAELKKE-YT-IVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred CCHHHHHHHH-HHHHHHhhC-cE-EEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 9997777775 455556655 66 99999998765 68999999999998654
No 117
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.78 E-value=1.4e-18 Score=186.00 Aligned_cols=155 Identities=18% Similarity=0.175 Sum_probs=106.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------cccccccc--cccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY--AKVP 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~--~~i~ 497 (844)
++.++.+++|+ .+|++++|+|||||||||||++|+++... ..| .++|.... ....
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP-DSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC
Confidence 45689999999 88999999999999999999999765321 111 12222100 0011
Q ss_pred hhHH---------------------HhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhC------CCCcEEEEecCCCCCC
Q 003142 498 WFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQS------TSQSLVLLDEIGAGTN 549 (844)
Q Consensus 498 ~~~~---------------------i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a------~~p~LLLLDEP~sGlD 549 (844)
..+. ++..++...........+|+++++ +..+.+++ .+|+++||||||+|||
T Consensus 93 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD 172 (258)
T PRK13548 93 VEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD 172 (258)
T ss_pred HHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCC
Confidence 1111 122233333334445567776655 55555566 4899999999999999
Q ss_pred HHHHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 550 PLEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 550 p~~~~al~~~Ile~L~-~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+.....+.. ++..+. +.|.+ ||++||+.+.. .+|+++..+.+|++...
T Consensus 173 ~~~~~~l~~-~l~~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 173 LAHQHHVLR-LARQLAHERGLA-VIVVLHDLNLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHHHH-HHHHHHHhcCCE-EEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence 987777765 444555 66787 99999998776 59999999999988654
No 118
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=8.1e-19 Score=186.55 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=111.4
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccc------------ccccccccchhH---HHhhh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI------------LSSEYAKVPWFD---SVFAD 505 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~v------------pa~~~~~i~~~~---~i~~~ 505 (844)
...+..+|+++ ..|++++++||||||||||||+|+++..... |... +. ....++++- .+|.+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~-G~I~~~~~~l~D~~~~~~-~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA-GRIRLNGRVLFDVSNLAV-RDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC-ceEEECCEeccchhccch-hhcceeEEEechhhccc
Confidence 44566789999 8999999999999999999999987654322 2111 11 111222211 23444
Q ss_pred CCchhhHhhh---------------------------------hhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 506 IGDEQSLSQS---------------------------------LSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 506 ig~~q~i~~~---------------------------------lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
+++.+++..+ ...+||+ .+|++.+.+++.+|++||||||+++||..
T Consensus 92 mtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~ 171 (345)
T COG1118 92 MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 171 (345)
T ss_pred chHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHH
Confidence 4444444333 3345654 46677788889999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
-...+-..+.+.....|.| +++||||.+.+ .+|+++..+.||.++-.
T Consensus 172 vr~~lr~wLr~~~~~~~~t-tvfVTHD~eea~~ladrvvvl~~G~Ieqv 219 (345)
T COG1118 172 VRKELRRWLRKLHDRLGVT-TVFVTHDQEEALELADRVVVLNQGRIEQV 219 (345)
T ss_pred HHHHHHHHHHHHHHhhCce-EEEEeCCHHHHHhhcceEEEecCCeeeee
Confidence 8888866666655555887 99999998776 69999999999998753
No 119
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.4e-18 Score=182.08 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=107.2
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccc--ccch
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA--KVPW 498 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~--~i~~ 498 (844)
..++.+++|. .+|++++|+||||+|||||||+|+++... ..| .++|..... ...+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-TSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence 4689999999 89999999999999999999999764311 111 122221000 0111
Q ss_pred hH---------------------HHhhhCCchh--hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHH
Q 003142 499 FD---------------------SVFADIGDEQ--SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 554 (844)
Q Consensus 499 ~~---------------------~i~~~ig~~q--~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~ 554 (844)
.+ .++..++... ........+|+++ +++..+.+++.+|+++||||||+|+|+....
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 172 (242)
T cd03295 93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 11 1233344442 3445566788766 4566666789999999999999999997777
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEccchhH-HhhhccccceeeeEEEEe
Q 003142 555 ALGMSLLEAFAE-SGSLLTIATTHHGEL-KTLKYSNDFFENACMEFD 599 (844)
Q Consensus 555 al~~~Ile~L~~-~g~t~vIitTHd~el-~~~a~~~~~v~ng~v~fd 599 (844)
.+. .++..+.+ .|.+ ||++||+.+. ..+|+++..+.+|.+...
T Consensus 173 ~l~-~~L~~~~~~~g~t-vii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (242)
T cd03295 173 QLQ-EEFKRLQQELGKT-IVFVTHDIDEAFRLADRIAIMKNGEIVQV 217 (242)
T ss_pred HHH-HHHHHHHHHcCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 665 45555655 4786 9999999875 478999999999998643
No 120
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.6e-18 Score=180.03 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=100.4
Q ss_pred EEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------------ccccccccc--ccchh
Q 003142 448 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEYA--KVPWF 499 (844)
Q Consensus 448 disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------------~~vpa~~~~--~i~~~ 499 (844)
+++|+ .+ ++++|+||||+||||||++|+++... ..| .++|..... .....
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP-DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVR 93 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHH
Confidence 77777 67 99999999999999999999765321 111 112221000 01111
Q ss_pred H-------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHH
Q 003142 500 D-------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 559 (844)
Q Consensus 500 ~-------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~ 559 (844)
+ .++..++...........+|+++ +++..+.+++.+|+++||||||+|||+.....+..
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~- 172 (214)
T cd03297 94 ENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP- 172 (214)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH-
Confidence 1 12233444444445556778766 45666667899999999999999999977777764
Q ss_pred HHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 560 LLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 560 Ile~L~~~-g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
++..+.+. |.| +|++||+.+.. .+|+++..+.+|.+..
T Consensus 173 ~l~~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 173 ELKQIKKNLNIP-VIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HHHHHHHHcCcE-EEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 55555554 787 99999998766 6899999999988754
No 121
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.7e-18 Score=187.67 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=109.3
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcc--c---------------------cccccccc---cc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS--G---------------------LHILSSEY---AK 495 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~--G---------------------~~vpa~~~---~~ 495 (844)
..++.+++|+ ..|++++|+||||||||||||+|+++...... | .++|.... ..
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 4589999999 88999999999999999999999876432210 1 11221100 00
Q ss_pred cchhHH---------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 496 VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 496 i~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
..+.+. ++..++...........+|+++ +++..+.+++.+|++|||||||+|||+...
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~ 179 (282)
T PRK13640 100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179 (282)
T ss_pred CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 011111 1223344433444456677765 556666778999999999999999999888
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 554 TALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 554 ~al~~~Ile~L~~-~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
..+.. ++..+.+ .|.+ ||++||+.++..+|+++..+.+|.+..+.
T Consensus 180 ~~l~~-~l~~l~~~~g~t-vli~tH~~~~~~~~d~i~~l~~G~i~~~g 225 (282)
T PRK13640 180 EQILK-LIRKLKKKNNLT-VISITHDIDEANMADQVLVLDDGKLLAQG 225 (282)
T ss_pred HHHHH-HHHHHHHhcCCE-EEEEecCHHHHHhCCEEEEEECCEEEEeC
Confidence 87765 5555554 4787 99999999888889999999999987643
No 122
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.6e-18 Score=188.58 Aligned_cols=156 Identities=14% Similarity=0.121 Sum_probs=109.0
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc------------------------cccccccccc-c--
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------------SGLHILSSEY-A-- 494 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q------------------------~G~~vpa~~~-~-- 494 (844)
..++++++|+ ..|++++|+||||||||||||+|+++..... ...+++.... .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF 99 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh
Confidence 4689999999 8999999999999999999999976532110 0012222110 0
Q ss_pred ccchhH---------------------HHhhhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 495 KVPWFD---------------------SVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 495 ~i~~~~---------------------~i~~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
...+.+ .++..++.. .........+|+++ +++..+.+++.+|++|||||||+|||+.
T Consensus 100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~ 179 (290)
T PRK13634 100 EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179 (290)
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 001111 122234443 22344556778765 5566666789999999999999999997
Q ss_pred HHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 552 EGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 552 ~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
....+. .++..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+.++.
T Consensus 180 ~~~~l~-~~L~~l~~~~g~t-viiitHd~~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 180 GRKEMM-EMFYKLHKEKGLT-TVLVTHSMEDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 777775 45556655 4887 99999998876 689999999999998654
No 123
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.77 E-value=2.4e-18 Score=183.08 Aligned_cols=155 Identities=14% Similarity=0.163 Sum_probs=107.4
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------------------c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------------------L 486 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------------------~ 486 (844)
+..++.+++|+ .+|++++|+||||||||||||+|+++... ..| .
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI-DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 35689999999 89999999999999999999999765321 111 1
Q ss_pred cccccccc--ccchhH----------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEE
Q 003142 487 HILSSEYA--KVPWFD----------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLL 541 (844)
Q Consensus 487 ~vpa~~~~--~i~~~~----------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLL 541 (844)
+++..... ...+.+ .++..++....+......+|+++ +++..+.+++.+|+++||
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 170 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLF 170 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 12211000 011111 12223344444444556677765 556666778999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 542 DEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 542 DEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
||||+|||+.....+.. ++..+.+ .|.+ +|++||+.+.. .+|+++..+.+|.+...
T Consensus 171 DEP~~~LD~~~~~~l~~-~l~~~~~~~~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 171 DEVTSALDPELVGEVLN-VIRRLASEHDLT-MLLVTHEMGFAREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred eCCcccCCHHHHHHHHH-HHHHHHHhcCcE-EEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999977777764 4455554 4786 99999998776 68999999999998643
No 124
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.77 E-value=2e-18 Score=184.81 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=107.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--ccc--------------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--KSG--------------------------LHILSSE 492 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--q~G--------------------------~~vpa~~ 492 (844)
++.++.+++|+ .+|++++|+|||||||||||++|+++.... ..| .++|...
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 45789999999 889999999999999999999997664221 011 1222210
Q ss_pred c--cccchhHH-----------------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEE
Q 003142 493 Y--AKVPWFDS-----------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVL 540 (844)
Q Consensus 493 ~--~~i~~~~~-----------------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLL 540 (844)
. ....+.+. ++..++....+......+|+++ +++..+.+++.+|+|||
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL 175 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 0 00111111 1222344333444556677655 55666667899999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhH-HhhhccccceeeeEEEEe
Q 003142 541 LDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGEL-KTLKYSNDFFENACMEFD 599 (844)
Q Consensus 541 LDEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el-~~~a~~~~~v~ng~v~fd 599 (844)
|||||+|||+.....+.. ++..+.+ .|.+ ||++||+.++ ..+|+++..+.+|.+..+
T Consensus 176 lDEPt~~LD~~~~~~l~~-~l~~~~~~~g~t-vii~tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 176 ADEPIASLDPESARIVMD-TLRDINQNDGIT-VVVTLHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred ecCccccCCHHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999977777754 5555654 4776 9999999886 578999999999988654
No 125
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.77 E-value=1.6e-18 Score=181.22 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=103.5
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------cccccccc-c---
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY-A--- 494 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~-~--- 494 (844)
.++++++|+ ..|++++|+|||||||||||++|+++... ..| .+++.... .
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 688999999 88999999999999999999999754311 111 12222110 0
Q ss_pred ccchhHH-----------------------HhhhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCC
Q 003142 495 KVPWFDS-----------------------VFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 495 ~i~~~~~-----------------------i~~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlD 549 (844)
.....+. ++..++.. .........+|+++ +++..+.+++.+|++|||||||+|||
T Consensus 98 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 177 (228)
T cd03257 98 RMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177 (228)
T ss_pred cCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 0111111 11223332 22334445677765 55666667899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc-CCeEEEEEccchhHHh-hhccccceeeeEEEE
Q 003142 550 PLEGTALGMSLLEAFAES-GSLLTIATTHHGELKT-LKYSNDFFENACMEF 598 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~~-~a~~~~~v~ng~v~f 598 (844)
+.....+.. ++..+.+. |.+ ||++||+.+... +|+++..+.+|.+..
T Consensus 178 ~~~~~~l~~-~l~~~~~~~~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 178 VSVQAQILD-LLKKLQEELGLT-LLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHHHHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 977777765 44455544 786 999999988765 899999999888753
No 126
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.77 E-value=2.5e-18 Score=181.64 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=106.4
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------cccccccc--ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~~--~~i 496 (844)
++.++.+++|+ .+|++++|+||||+|||||||+|++.... ..| .++|.... ...
T Consensus 14 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 45689999999 88999999999999999999999765311 111 01111000 000
Q ss_pred chhH-----------------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCC
Q 003142 497 PWFD-----------------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 497 ~~~~-----------------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~s 546 (844)
.+.+ .++..++.........+.+|+++ +++..+.+++.+|++|||||||+
T Consensus 93 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~ 172 (242)
T TIGR03411 93 TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVA 172 (242)
T ss_pred CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 1111 12223344333444556677755 55666667899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|||+.....+. .++..+.+ +.+ +|++||+.++. .+|+++..+.+|++...
T Consensus 173 ~LD~~~~~~l~-~~l~~~~~-~~t-ii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 173 GMTDEETEKTA-ELLKSLAG-KHS-VVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred CCCHHHHHHHH-HHHHHHhc-CCE-EEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 99997777765 45555655 676 99999998876 58999999999998754
No 127
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.77 E-value=1.9e-18 Score=192.92 Aligned_cols=156 Identities=21% Similarity=0.207 Sum_probs=111.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------ccccccccc---ccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA---KVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~~~---~i~~ 498 (844)
+..++++++|+ .+|++++|+||||||||||||+|+++.... .| .+++. ... .+.+
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~-~G~I~i~g~~~~~~~~~~r~ig~v~Q-~~~lfp~~tv 93 (353)
T TIGR03265 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT-AGTIYQGGRDITRLPPQKRDYGIVFQ-SYALFPNLTV 93 (353)
T ss_pred CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC-ceEEEECCEECCCCCHHHCCEEEEeC-CcccCCCCcH
Confidence 45688899999 889999999999999999999998753211 11 11221 110 0111
Q ss_pred h---------------------HHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 499 F---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 499 ~---------------------~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
. +.++..++...........+|+++ ++++.+.+++.+|+++|||||++|||+.....+
T Consensus 94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l 173 (353)
T TIGR03265 94 ADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL 173 (353)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1 123334455555555667788765 566777788999999999999999999888887
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 557 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 557 ~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
...+.+...+.|.| +|++|||.+.+ .+|+++..+.+|.+...+
T Consensus 174 ~~~L~~l~~~~~~t-vi~vTHd~~ea~~l~d~i~vl~~G~i~~~g 217 (353)
T TIGR03265 174 RTEIRQLQRRLGVT-TIMVTHDQEEALSMADRIVVMNHGVIEQVG 217 (353)
T ss_pred HHHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 65555444445887 99999998765 799999999999997543
No 128
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.4e-18 Score=183.56 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=107.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccc--ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA--KVP 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~--~i~ 497 (844)
++.++.+++|+ .+|++++|+|||||||||||++|+++... ..| .++|..... .+.
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-QSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGIT 92 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCcc
Confidence 45789999999 88999999999999999999999764211 111 122221100 011
Q ss_pred hhHH-------------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 498 WFDS-------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 498 ~~~~-------------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
..+. .+..++...........+|+++ +++..+.+++.+|+++||||||+|+|+.
T Consensus 93 v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 172 (255)
T PRK11231 93 VRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172 (255)
T ss_pred HHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 1111 1222333333344455677765 5566677889999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
....+.. ++..+...|.| +|++||+.+.. .+|+++..+.+|.+...
T Consensus 173 ~~~~l~~-~l~~l~~~~~t-iii~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (255)
T PRK11231 173 HQVELMR-LMRELNTQGKT-VVTVLHDLNQASRYCDHLVVLANGHVMAQ 219 (255)
T ss_pred HHHHHHH-HHHHHHHCCCE-EEEEECCHHHHHHhcCEEEEEECCeEEEE
Confidence 7777764 55556666887 99999998765 69999999999988654
No 129
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.77 E-value=2e-18 Score=193.34 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=110.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-ccc-------------------cccccc--ccccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-SGL-------------------HILSSE--YAKVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-~G~-------------------~vpa~~--~~~i~~ 498 (844)
+..++++++|+ ..|++++|+||||||||||||+|+++..... .|. +++... ...+.+
T Consensus 17 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv 96 (362)
T TIGR03258 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKV 96 (362)
T ss_pred CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcH
Confidence 45689999999 8899999999999999999999987543221 021 111100 000111
Q ss_pred hH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 499 FD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 499 ~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
.+ .++..+++.+.......++|+++ +|++.+.+++.+|++||||||++|||+.....+
T Consensus 97 ~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l 176 (362)
T TIGR03258 97 EDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176 (362)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 11 12333444444555566778765 556777788999999999999999999888887
Q ss_pred HHHHHHHHHhc--CCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 557 GMSLLEAFAES--GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 557 ~~~Ile~L~~~--g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
.. .+..+.+. |.| +|++|||.+.+ .+|+++..+.+|.+....
T Consensus 177 ~~-~l~~l~~~~~g~t-il~vTHd~~ea~~l~dri~vl~~G~i~~~g 221 (362)
T TIGR03258 177 RE-EIAALHEELPELT-ILCVTHDQDDALTLADKAGIMKDGRLAAHG 221 (362)
T ss_pred HH-HHHHHHHhCCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 65 44555554 677 99999998765 689999999999997543
No 130
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.77 E-value=1.5e-18 Score=178.84 Aligned_cols=144 Identities=19% Similarity=0.249 Sum_probs=97.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc-------------------------ccccccc--
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEY-- 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~-------------------------~vpa~~~-- 493 (844)
++.++.+++|. ..|++++|+||||||||||||+|+++... ..|. +++....
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF-DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 45689999999 88999999999999999999999765321 1121 1111000
Q ss_pred cccchhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 494 AKVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 494 ~~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
....+.+ .++..++...........+|+++ +++..+.+++.+|+++||||||+|+|+.
T Consensus 89 ~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~ 168 (206)
T TIGR03608 89 ENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPK 168 (206)
T ss_pred cCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHH
Confidence 0001111 12233344444444556677755 5566667789999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~ 588 (844)
....+. .++..+.+.|.+ +|++||+.++..+|+++
T Consensus 169 ~~~~l~-~~l~~~~~~~~t-ii~~sh~~~~~~~~d~i 203 (206)
T TIGR03608 169 NRDEVL-DLLLELNDEGKT-IIIVTHDPEVAKQADRV 203 (206)
T ss_pred HHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHhhcCEE
Confidence 777775 455566666786 99999999877777654
No 131
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.77 E-value=9.9e-19 Score=177.38 Aligned_cols=147 Identities=15% Similarity=0.105 Sum_probs=99.8
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccc-ccc----------ccccchhHH------HhhhC
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL-SSE----------YAKVPWFDS------VFADI 506 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vp-a~~----------~~~i~~~~~------i~~~i 506 (844)
+++++++. .+|++++|+||||+|||||||+|+++... ..|.... ... ...+.++.+ ++..+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP-ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 78899999 88999999999999999999999765432 2231110 000 011222111 22223
Q ss_pred CchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hh
Q 003142 507 GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TL 584 (844)
Q Consensus 507 g~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~ 584 (844)
...+++.... .+|+++ +++..+.+++.+|+++|||||++|+|+.....+.. ++..+.+.|.+ +|++||+.+.. .+
T Consensus 94 t~~e~l~~~~-~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~-~l~~~~~~~~t-iii~sh~~~~~~~~ 170 (182)
T cd03215 94 SVAENIALSS-LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYR-LIRELADAGKA-VLLISSELDELLGL 170 (182)
T ss_pred cHHHHHHHHh-hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHH-HHHHHHHCCCE-EEEEeCCHHHHHHh
Confidence 3334332221 177665 55666777899999999999999999977777764 55566666776 99999997554 68
Q ss_pred hccccceeeeE
Q 003142 585 KYSNDFFENAC 595 (844)
Q Consensus 585 a~~~~~v~ng~ 595 (844)
|+++..+.+|.
T Consensus 171 ~d~v~~l~~G~ 181 (182)
T cd03215 171 CDRILVMYEGR 181 (182)
T ss_pred CCEEEEecCCc
Confidence 99888887765
No 132
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.77 E-value=1.6e-18 Score=193.50 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=109.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------ccccccc--ccccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSE--YAKVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~--~~~i~~~ 499 (844)
+..+.++++|+ .+|++++|+||||||||||||+|+++.... .| .++++.. .....+.
T Consensus 14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~ 92 (353)
T PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT-SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVF 92 (353)
T ss_pred CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHH
Confidence 45689999999 889999999999999999999997653211 11 1112100 0001111
Q ss_pred H-------------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 500 D-------------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 500 ~-------------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
+ .++..++..+........+|+++ |++..+.+++.+|++|||||||+|||+...
T Consensus 93 eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r 172 (353)
T PRK10851 93 DNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVR 172 (353)
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 1 22333444444455566788766 556666778999999999999999999888
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 554 TALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 554 ~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
..+... +..+.+ .|.| +|++|||.+.+ .+|+++..+.+|++....
T Consensus 173 ~~l~~~-L~~l~~~~g~t-ii~vTHd~~ea~~~~Dri~vl~~G~i~~~g 219 (353)
T PRK10851 173 KELRRW-LRQLHEELKFT-SVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219 (353)
T ss_pred HHHHHH-HHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 877654 445554 4787 99999998765 689999999999997543
No 133
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.5e-18 Score=185.28 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=107.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------cccccccc---ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKV 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~---~~i 496 (844)
++.++.+++|+ ..|++++|+|||||||||||++|+++... ..| .++|.... ...
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP-QSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA 99 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc
Confidence 45789999999 89999999999999999999999765321 111 12222110 001
Q ss_pred chhHH---------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHH
Q 003142 497 PWFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 554 (844)
Q Consensus 497 ~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~ 554 (844)
.+.+. ++..++....+......+|+++ +++..+.+++.+|++|||||||+|||+....
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~ 179 (271)
T PRK13632 100 TVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKR 179 (271)
T ss_pred cHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 11111 1222333333444556677765 5566667789999999999999999997777
Q ss_pred HHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 555 ALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 555 al~~~Ile~L~~~-g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
.+. .++..+.+. +.| +|++||+.+...+|+++..+.+|.+...
T Consensus 180 ~l~-~~l~~~~~~~~~t-iii~sH~~~~~~~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 180 EIK-KIMVDLRKTRKKT-LISITHDMDEAILADKVIVFSEGKLIAQ 223 (271)
T ss_pred HHH-HHHHHHHHhcCcE-EEEEEechhHHhhCCEEEEEECCEEEEe
Confidence 765 455556555 476 9999999887778999999999998654
No 134
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.2e-18 Score=192.29 Aligned_cols=157 Identities=12% Similarity=0.103 Sum_probs=110.6
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc-------------------cccccccc---ccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYA---KVP 497 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~-------------------~vpa~~~~---~i~ 497 (844)
++..++++++|+ .+|++++|+||||||||||||+|+++.-.. .|. +++. ... .+.
T Consensus 17 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~-~G~I~~~g~~i~~~~~~~r~ig~vfQ-~~~lfp~~t 94 (351)
T PRK11432 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT-EGQIFIDGEDVTHRSIQQRDICMVFQ-SYALFPHMS 94 (351)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC-ceEEEECCEECCCCCHHHCCEEEEeC-CcccCCCCC
Confidence 345688999999 889999999999999999999997654221 111 1111 100 111
Q ss_pred hhHH---------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 498 WFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 498 ~~~~---------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
+.++ ++..++...........+|+++ +|++.+.+++.+|++||||||++|||+.....
T Consensus 95 v~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~ 174 (351)
T PRK11432 95 LGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRS 174 (351)
T ss_pred HHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence 1111 2223344444445556778755 56677778899999999999999999988888
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 556 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 556 l~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+...+.+...+.|.| +|++|||.+.. .+|+++..+.+|.+....
T Consensus 175 l~~~l~~l~~~~g~t-ii~vTHd~~e~~~laD~i~vm~~G~i~~~g 219 (351)
T PRK11432 175 MREKIRELQQQFNIT-SLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219 (351)
T ss_pred HHHHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 765544433445887 99999998765 799999999999997543
No 135
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.3e-18 Score=186.70 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=108.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc----------------------cccccccccc---cc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------------------SGLHILSSEY---AK 495 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q----------------------~G~~vpa~~~---~~ 495 (844)
++.++.+++|+ ..|++++|+||||+|||||+|+|+++..... ...++|.... ..
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 97 (283)
T PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97 (283)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence 45699999999 8999999999999999999999976531110 0112232110 00
Q ss_pred cchhHH---------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 496 VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 496 i~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
..+.+. .+..++...........+|+++ +++..+.+++.+|++|||||||+|+|+...
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~ 177 (283)
T PRK13636 98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177 (283)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 111111 1223333333344556677766 455666678899999999999999999777
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 554 TALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 554 ~al~~~Ile~L~~~-g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
..+.. ++..+.+. |.| ||++||+.+.. .+|+++..+.+|.+.+++
T Consensus 178 ~~l~~-~l~~l~~~~g~t-illvsH~~~~~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 178 SEIMK-LLVEMQKELGLT-IIIATHDIDIVPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred HHHHH-HHHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 77754 55556554 787 99999998877 589999999999987654
No 136
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.77 E-value=3e-18 Score=171.31 Aligned_cols=157 Identities=19% Similarity=0.228 Sum_probs=115.1
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccc------cccccccccch---------------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH------ILSSEYAKVPW--------------- 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~------vpa~~~~~i~~--------------- 498 (844)
++..++.+++|+ +.|+++-|+||+|||||||||+|........ |.. +..-....+++
T Consensus 13 ~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~-G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR-GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCC-ceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 346799999999 9999999999999999999999954332211 100 00000011111
Q ss_pred -----h---------------------HHHhhhCCchhhHhhhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 499 -----F---------------------DSVFADIGDEQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 499 -----~---------------------~~i~~~ig~~q~i~~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
+ ...+...|..+......+.+|| ++||+..+.+.++.|.|||-||||.+|||.
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~ 171 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPD 171 (223)
T ss_pred ccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChH
Confidence 1 1234445566666666777887 456666667789999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhccccceeeeEEEEec
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 600 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~-~a~~~~~v~ng~v~fd~ 600 (844)
....++ .+++.+...|+| ||++|||.++.. +..++..+.+|.+.-|.
T Consensus 172 ~s~~im-~lfeeinr~GtT-Vl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 172 LSWEIM-RLFEEINRLGTT-VLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHH-HHHHHHhhcCcE-EEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 777775 678888999997 999999999884 77888889999987665
No 137
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.77 E-value=9.7e-19 Score=192.79 Aligned_cols=156 Identities=17% Similarity=0.148 Sum_probs=114.7
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcc--------ccccccccccccchhH---HHhhhC--
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS--------GLHILSSEYAKVPWFD---SVFADI-- 506 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~--------G~~vpa~~~~~i~~~~---~i~~~i-- 506 (844)
++..+..|++|+ ..|++++|+||+||||||+||+|+++.-.... -..+|+ +...++++- .+|.++
T Consensus 16 g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp-~kR~ig~VFQ~YALFPHltV 94 (352)
T COG3842 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP-EKRPIGMVFQSYALFPHMTV 94 (352)
T ss_pred CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-hhcccceeecCcccCCCCcH
Confidence 467899999999 88999999999999999999999876543221 111232 111121111 123333
Q ss_pred ------------------------------CchhhHhhhhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 507 ------------------------------GDEQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 507 ------------------------------g~~q~i~~~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
++.+......+.+||+ ++|++.+.+++.+|.+||||||.++||..-+..
T Consensus 95 ~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~ 174 (352)
T COG3842 95 EENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174 (352)
T ss_pred HHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHH
Confidence 3333334444556664 567788888999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 556 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 556 l~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
+-..+.+...+.|.| +|++|||.+.+ .+++++..+.+|+++-
T Consensus 175 mr~Elk~lq~~~giT-~i~VTHDqeEAl~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 175 MRKELKELQRELGIT-FVYVTHDQEEALAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred HHHHHHHHHHhcCCe-EEEEECCHHHHhhhccceEEccCCceee
Confidence 887777777777887 99999997666 6999999999998863
No 138
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.7e-18 Score=185.62 Aligned_cols=155 Identities=17% Similarity=0.173 Sum_probs=108.2
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------cccccccc---cccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKVP 497 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~---~~i~ 497 (844)
..++.+++|+ ..|++++|+||||||||||+|+|+++... ..| .+++.... ....
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP-TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 4689999999 89999999999999999999999764321 111 12222110 0011
Q ss_pred hhHH---------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 498 WFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 498 ~~~~---------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
+.+. ++..++...........+|+++ +++..+.+++.+|++|||||||+|+|+.....
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~ 175 (277)
T PRK13652 96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175 (277)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1111 1222334333444455677765 55666677899999999999999999977777
Q ss_pred HHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 556 LGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 556 l~~~Ile~L~~~-g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+. .++..+.+. |.| ||++||+.+.. .+|+++..+.+|.+.+++
T Consensus 176 l~-~~l~~l~~~~g~t-vli~tH~~~~~~~~~drv~~l~~G~i~~~g 220 (277)
T PRK13652 176 LI-DFLNDLPETYGMT-VIFSTHQLDLVPEMADYIYVMDKGRIVAYG 220 (277)
T ss_pred HH-HHHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCeEEEEC
Confidence 65 455556554 786 99999998876 699999999999987653
No 139
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.77 E-value=3.2e-18 Score=182.60 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=105.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------ccccccccc--cc--ch--------
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEYA--KV--PW-------- 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------~~vpa~~~~--~i--~~-------- 498 (844)
++.++.+++|. ..|++++|+||||||||||||+|+++... ..| .++|..... .+ ..
T Consensus 16 ~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p-~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~ 94 (251)
T PRK09544 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP-DEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRP 94 (251)
T ss_pred CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCccCEEEeccccccccccChhHHHHHhccc
Confidence 45689999999 88999999999999999999999765321 112 123321100 00 00
Q ss_pred ------hHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCe
Q 003142 499 ------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSL 570 (844)
Q Consensus 499 ------~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~-g~t 570 (844)
+..++..++..+.+......+|+++ +++..+.+++.+|+++||||||+|||+.....+.. ++..+.+. |.|
T Consensus 95 ~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~-~L~~~~~~~g~t 173 (251)
T PRK09544 95 GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD-LIDQLRRELDCA 173 (251)
T ss_pred cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHHhcCCE
Confidence 1122344555555666677888766 45666667889999999999999999977777764 44555544 787
Q ss_pred EEEEEccchhHH-hhhccccceeeeEEE
Q 003142 571 LTIATTHHGELK-TLKYSNDFFENACME 597 (844)
Q Consensus 571 ~vIitTHd~el~-~~a~~~~~v~ng~v~ 597 (844)
+|++||+.++. .+|+++..+.+ .+.
T Consensus 174 -iiivsH~~~~i~~~~d~i~~l~~-~i~ 199 (251)
T PRK09544 174 -VLMVSHDLHLVMAKTDEVLCLNH-HIC 199 (251)
T ss_pred -EEEEecCHHHHHHhCCEEEEECC-ceE
Confidence 99999998876 68888877644 443
No 140
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.77 E-value=2.7e-18 Score=192.97 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=110.2
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------ccccccc--ccccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSE--YAKVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~--~~~i~~~ 499 (844)
+..+..+++|+ ..|++++|+||||||||||||+|+++.... .| .++++.. ...+.+.
T Consensus 26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~-~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 104 (375)
T PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF 104 (375)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHH
Confidence 45688899999 889999999999999999999998654221 11 0111100 0011111
Q ss_pred H---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 500 D---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 500 ~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
+ .++..++..........++|+++ +|++.+.+++.+|++||||||++|||+.....+.
T Consensus 105 eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~ 184 (375)
T PRK09452 105 ENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQ 184 (375)
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHH
Confidence 1 12333444455555666788755 5566677789999999999999999998888776
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 558 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 558 ~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
..|.+...+.|.| +|++|||.+.+ .+|+++..+.+|++...
T Consensus 185 ~~L~~l~~~~g~t-iI~vTHd~~ea~~laDri~vl~~G~i~~~ 226 (375)
T PRK09452 185 NELKALQRKLGIT-FVFVTHDQEEALTMSDRIVVMRDGRIEQD 226 (375)
T ss_pred HHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 5544433445887 99999998765 79999999999999754
No 141
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.7e-18 Score=185.93 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=109.7
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------ccccccccc-cc--
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEYA-KV-- 496 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~~~-~i-- 496 (844)
+.++.+++|+ .+|++++|+|||||||||||++|+++... ..| .++|..... .+
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP-SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT 101 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEeccccccHHHHhhheEEEecChhhhhccc
Confidence 5699999999 89999999999999999999999755321 111 122221100 00
Q ss_pred chh---------------------HHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHH
Q 003142 497 PWF---------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGT 554 (844)
Q Consensus 497 ~~~---------------------~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~ 554 (844)
.+. ..++..+|...........+|++++ ++..+.+++.+|++|||||||+|||+....
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~ 181 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRR 181 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 011 1122334444444555667887665 455666789999999999999999998888
Q ss_pred HHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 555 ALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 555 al~~~Ile~L~~-~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
.+. .++..+.+ .|.| ||++||+.+....|+++..+.+|.+..+.
T Consensus 182 ~l~-~~l~~l~~~~g~t-illvtH~~~~~~~~d~v~~l~~G~i~~~g 226 (280)
T PRK13633 182 EVV-NTIKELNKKYGIT-IILITHYMEEAVEADRIIVMDSGKVVMEG 226 (280)
T ss_pred HHH-HHHHHHHHhcCCE-EEEEecChHHHhcCCEEEEEECCEEEEec
Confidence 776 45556654 4887 99999999888779999999999987643
No 142
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.8e-18 Score=184.23 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=107.4
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------cccccccc--cccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY--AKVP 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~--~~i~ 497 (844)
++.++.+++|. .+|++++|+||||||||||+|+|+++.-. ..| .+++.... ....
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-SEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 45789999999 88999999999999999999999765311 111 12222100 0011
Q ss_pred hhH-------------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 498 WFD-------------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 498 ~~~-------------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
+.+ .++..++....+......+|+++ +++..+.+++.+|++|||||||+|||+.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~ 181 (265)
T PRK10575 102 VRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIA 181 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 111 12223333333344455678765 5566667889999999999999999997
Q ss_pred HHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
....+.. ++..+.. .|.+ +|++||+.++. .+|+++..+.+|++...
T Consensus 182 ~~~~~~~-~l~~l~~~~~~t-iii~sH~~~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 182 HQVDVLA-LVHRLSQERGLT-VIAVLHDINMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 7777654 5555554 4787 99999998766 68999999999998643
No 143
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.77 E-value=2.9e-18 Score=181.10 Aligned_cols=157 Identities=19% Similarity=0.190 Sum_probs=106.2
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH-Hhhcccc----------------------cccccccc--c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGL----------------------HILSSEYA--K 495 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~-~~~q~G~----------------------~vpa~~~~--~ 495 (844)
++.++.+++|. .+|++++|+||||||||||||+|+++. +.+..|. ++|..... .
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 45689999999 899999999999999999999998763 1122221 12211000 0
Q ss_pred cchh----------------------------HHHhhhCCchh-hHhhhhh-hhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 496 VPWF----------------------------DSVFADIGDEQ-SLSQSLS-TFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 496 i~~~----------------------------~~i~~~ig~~q-~i~~~ls-tfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
.... ..++..++..+ ....... .+|+++ +++..+.+++.+|++||||||
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 171 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 0000 01111223321 1223333 377765 556666778999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-h-hccccceeeeEEEEec
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-L-KYSNDFFENACMEFDE 600 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~-~-a~~~~~v~ng~v~fd~ 600 (844)
|+|+|+.....+. .++..+.+.|.| ||++||+.++.. + |+++..+.+|.+..+.
T Consensus 172 t~~LD~~~~~~l~-~~l~~~~~~~~t-vi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 172 DSGLDIDALKIVA-EGINRLREPDRS-FLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred cccCCHHHHHHHH-HHHHHHHHCCcE-EEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 9999997777775 455666667787 999999988775 5 7898889999987654
No 144
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.3e-18 Score=181.13 Aligned_cols=154 Identities=15% Similarity=0.205 Sum_probs=107.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccccc--c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i--~ 497 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.. ...+ .
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~-~~~~~~t 92 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP-TEGSILIDGVDIKTIDVIDLRRKIGMVFQQ-PHLFEGT 92 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEhhhcChHHhhhcEEEEecC-chhchhh
Confidence 45689999999 88999999999999999999999764321 111 122221 0000 0
Q ss_pred h-----------------hHHHhhhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHH
Q 003142 498 W-----------------FDSVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558 (844)
Q Consensus 498 ~-----------------~~~i~~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~ 558 (844)
+ ...++..++.. .........+|+++ +++..+.+++.+|+++||||||+|+|+.....+.
T Consensus 93 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~- 171 (241)
T PRK14250 93 VKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE- 171 (241)
T ss_pred HHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-
Confidence 0 11123334443 23344556678755 5566666789999999999999999997777665
Q ss_pred HHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 559 SLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 559 ~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.++..+.+ .|.| ||++||+.++. .+|+++..+.+|.+...
T Consensus 172 ~~l~~~~~~~g~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (241)
T PRK14250 172 ELIVKLKNKMNLT-VIWITHNMEQAKRIGDYTAFLNKGILVEY 213 (241)
T ss_pred HHHHHHHHhCCCE-EEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 45555655 4887 99999998875 68999999999988643
No 145
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.77 E-value=3.4e-18 Score=177.53 Aligned_cols=151 Identities=15% Similarity=0.209 Sum_probs=102.6
Q ss_pred eeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------ccccccccc--ccchhHH--
Q 003142 446 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWFDS-- 501 (844)
Q Consensus 446 ~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~~~--~i~~~~~-- 501 (844)
..+++|. .+|++++|+||||||||||+|+|+++... ..| .++|..... .....++
T Consensus 14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~ 92 (213)
T TIGR01277 14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP-ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG 92 (213)
T ss_pred ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence 4577888 78899999999999999999999765321 111 122221000 0111111
Q ss_pred -------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHH
Q 003142 502 -------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 561 (844)
Q Consensus 502 -------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Il 561 (844)
++..++..+........+|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~-~l 171 (213)
T TIGR01277 93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLA-LV 171 (213)
T ss_pred hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH-HH
Confidence 2233344333444455677765 55566667899999999999999999977777764 55
Q ss_pred HHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 562 EAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 562 e~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
..+.+ .+.| +|++||+.++. .+|+++..+.+|.+...
T Consensus 172 ~~~~~~~~~t-ii~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 172 KQLCSERQRT-LLMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred HHHHHhcCCE-EEEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 55554 4776 99999998775 68999999999988654
No 146
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=2.4e-18 Score=194.58 Aligned_cols=156 Identities=15% Similarity=0.177 Sum_probs=109.7
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------------ccccccccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEYA 494 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------------~~vpa~~~~ 494 (844)
+..+++++++|+ ..|++++|+||||||||||||+|+++... ..| .+++.....
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p-~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP-TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 455689999999 89999999999999999999999754311 111 122221000
Q ss_pred --ccchhH---------------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 495 --KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 495 --~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
...+.+ .++..++..+......+.+|++++ ++..+.+++.+|++|||||||+||||
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~ 197 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDP 197 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 011111 123334555555556677888664 55666678999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 551 LEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 551 ~~~~al~~~Ile~L~-~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.....+...+ ..+. +.|.| ||++||+.+.. .+|+++..+.+|++...
T Consensus 198 ~~r~~l~~~L-~~l~~~~g~T-IIivTHd~~~~~~~~Dri~vL~~G~i~~~ 246 (400)
T PRK10070 198 LIRTEMQDEL-VKLQAKHQRT-IVFISHDLDEAMRIGDRIAIMQNGEVVQV 246 (400)
T ss_pred HHHHHHHHHH-HHHHHHCCCe-EEEEECCHHHHHHhCCEEEEEECCEEEec
Confidence 8888776544 4554 45787 99999998765 68999999999988643
No 147
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.9e-18 Score=184.46 Aligned_cols=155 Identities=15% Similarity=0.060 Sum_probs=107.2
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccccc---c
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV---P 497 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i---~ 497 (844)
..++.+++|. .+|++++|+||||||||||+++|+++... ..| .++|......+ .
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 100 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-KSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI 100 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEECCcCCHHHHHhheeEEEeChHHhccccc
Confidence 4589999999 88999999999999999999999765321 111 12222110000 0
Q ss_pred hh---------------------HHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 498 WF---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 498 ~~---------------------~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
.. ..++..++...........+|+++ +++..+.+++.+|++|||||||+|||+.....
T Consensus 101 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~ 180 (269)
T PRK13648 101 VKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQN 180 (269)
T ss_pred HHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 00 111223333333444455677765 55666677899999999999999999988887
Q ss_pred HHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 556 LGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 556 l~~~Ile~L~~-~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
+.. ++..+.+ .|.| +|++||+.+....|+++..+.+|.+..+.
T Consensus 181 l~~-~L~~~~~~~~~t-iiivtH~~~~~~~~d~i~~l~~G~i~~~g 224 (269)
T PRK13648 181 LLD-LVRKVKSEHNIT-IISITHDLSEAMEADHVIVMNKGTVYKEG 224 (269)
T ss_pred HHH-HHHHHHHhcCCE-EEEEecCchHHhcCCEEEEEECCEEEEec
Confidence 765 4555554 4776 99999998877679999999999987653
No 148
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=2.7e-18 Score=179.80 Aligned_cols=155 Identities=17% Similarity=0.085 Sum_probs=111.2
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc----cccccccccc----ccc-------------------
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----SGLHILSSEY----AKV------------------- 496 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q----~G~~vpa~~~----~~i------------------- 496 (844)
...|++|+ +.|.+++++||||+||||+||++.++..... .+.+.|.... ..+
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds 118 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDS 118 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhh
Confidence 56788999 8999999999999999999999966544321 1112222100 000
Q ss_pred -chhH---------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHH
Q 003142 497 -PWFD---------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 559 (844)
Q Consensus 497 -~~~~---------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~ 559 (844)
.+.. .+..-++.+..+......+|-+. .+...+++++++|.+|+|||||-|||.....++-..
T Consensus 119 ~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~F 198 (325)
T COG4586 119 LEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREF 198 (325)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHH
Confidence 0000 01112233444455556667554 455556678999999999999999999888888877
Q ss_pred HHHHHHhcCCeEEEEEccch-hHHhhhccccceeeeEEEEec
Q 003142 560 LLEAFAESGSLLTIATTHHG-ELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 560 Ile~L~~~g~t~vIitTHd~-el~~~a~~~~~v~ng~v~fd~ 600 (844)
+-++-..+++| |++|||+. ++..+|+++..+.+|.+.||+
T Consensus 199 lke~n~~~~aT-VllTTH~~~di~~lc~rv~~I~~Gqlv~dg 239 (325)
T COG4586 199 LKEYNEERQAT-VLLTTHIFDDIATLCDRVLLIDQGQLVFDG 239 (325)
T ss_pred HHHHHHhhCce-EEEEecchhhHHHhhhheEEeeCCcEeecc
Confidence 77777778887 99999995 677899999999999999985
No 149
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.1e-18 Score=173.08 Aligned_cols=158 Identities=18% Similarity=0.173 Sum_probs=118.1
Q ss_pred cCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccc---------------------------
Q 003142 440 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS--------------------------- 491 (844)
Q Consensus 440 ~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~--------------------------- 491 (844)
.+++.|..++++. +.|.++.|+||||+||||||-+++-+.-+...-..+.+.
T Consensus 11 y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rl 90 (252)
T COG4604 11 YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRL 90 (252)
T ss_pred hCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhee
Confidence 4678999999999 899999999999999999999986432221100000000
Q ss_pred ------cccccc------------hhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHH-hCCCCcEEEEecCCCCCCHHH
Q 003142 492 ------EYAKVP------------WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS-QSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 492 ------~~~~i~------------~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~-~a~~p~LLLLDEP~sGlDp~~ 552 (844)
.+.++| ..++.+..+..++--.+.+.++||++++.+.++. ++.+.+.+|||||.++||...
T Consensus 91 TV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkH 170 (252)
T COG4604 91 TVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170 (252)
T ss_pred EHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHH
Confidence 011111 1233445556666667788899999988888775 588999999999999999999
Q ss_pred HHHHHHHHHHHHH-hcCCeEEEEEccchhHHh-hhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFA-ESGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~-~~g~t~vIitTHd~el~~-~a~~~~~v~ng~v~fd 599 (844)
...++. +++.+. +.|.| |++|-||.+|+. |+|.++.+.||.+...
T Consensus 171 sv~iMk-~Lrrla~el~Kt-iviVlHDINfAS~YsD~IVAlK~G~vv~~ 217 (252)
T COG4604 171 SVQIMK-ILRRLADELGKT-IVVVLHDINFASCYSDHIVALKNGKVVKQ 217 (252)
T ss_pred HHHHHH-HHHHHHHHhCCe-EEEEEecccHHHhhhhheeeecCCEEEec
Confidence 888865 555554 56887 999999999995 9999999999999754
No 150
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.76 E-value=2.7e-18 Score=184.49 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=107.3
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc--------cccccc--ccccchhHHH-------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------HILSSE--YAKVPWFDSV------- 502 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~--------~vpa~~--~~~i~~~~~i------- 502 (844)
+...++.+++|. .+|++++|+|||||||||||++|+++.... .|. +++... .....+.+.+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~ 113 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT-VGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCM 113 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC-ceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHc
Confidence 345788999999 899999999999999999999997754321 121 111100 0011111111
Q ss_pred --------------hhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 003142 503 --------------FADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567 (844)
Q Consensus 503 --------------~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~ 567 (844)
+..++....+......+|+++ +++..+.+++.+|++||||||++|+|+.....+.. ++..+.+.
T Consensus 114 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~-~L~~~~~~ 192 (264)
T PRK13546 114 GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLD-KIYEFKEQ 192 (264)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHH-HHHHHHHC
Confidence 122233333444556777765 55666777899999999999999999977777664 45556667
Q ss_pred CCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 568 GSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 568 g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
|.+ +|++||+.+.. .+|+++..+.+|++..
T Consensus 193 g~t-iIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 193 NKT-IFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCE-EEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 887 99999998765 6899998888888853
No 151
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.76 E-value=2.8e-18 Score=184.17 Aligned_cols=156 Identities=13% Similarity=0.126 Sum_probs=106.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh-----------------------ccccccccccc----
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-----------------------KSGLHILSSEY---- 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-----------------------q~G~~vpa~~~---- 493 (844)
++.++++++|+ .+|++++|+||||||||||||+|+++.... +...++|....
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 35789999999 899999999999999999999997642110 00112222110
Q ss_pred cccchhH----------------------HHhhhCCch-hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCC
Q 003142 494 AKVPWFD----------------------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 494 ~~i~~~~----------------------~i~~~ig~~-q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlD 549 (844)
......+ .++..++.. .........+|++++ ++..+.+++.+|++|||||||+|||
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD 182 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 0011111 122333442 233445566777664 5566667899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 550 PLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+.....+.. ++..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 183 ~~~~~~l~~-~l~~~~~~~g~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 183 MVLQAVILE-LLRKLQQAFGTA-YLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHH-HHHHHHHhcCcE-EEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 977777665 4455554 4787 99999998877 48999999999988654
No 152
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.76 E-value=2.5e-18 Score=183.49 Aligned_cols=156 Identities=16% Similarity=0.142 Sum_probs=108.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------cccccccc--cccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY--AKVP 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~--~~i~ 497 (844)
++.++.+++|. .+|++++|+||||+|||||||+|+++... ..| .++|.... ....
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP-DAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-CCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCC
Confidence 45799999999 89999999999999999999999764311 111 12222110 0011
Q ss_pred hhHH-------------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 498 WFDS-------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 498 ~~~~-------------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
..+. .+..++..+........+|+++ +++..+.+++.+|+++||||||+|+|+.
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 171 (256)
T TIGR03873 92 VRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVR 171 (256)
T ss_pred HHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 1111 1222333333334445677765 5566666789999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
....+. .++..+.+.|.| +|++||+.+.. .+|+++..+.+|.+.++.
T Consensus 172 ~~~~l~-~~l~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~g 219 (256)
T TIGR03873 172 AQLETL-ALVRELAATGVT-VVAALHDLNLAASYCDHVVVLDGGRVVAAG 219 (256)
T ss_pred HHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEeCCCEEEec
Confidence 777765 556666666776 99999998877 699999999999987543
No 153
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.8e-18 Score=183.18 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=107.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccc--ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA--KVP 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~--~i~ 497 (844)
++.++++++|. .+|++++|+||||||||||||+|+++... ..| .++|..... ...
T Consensus 19 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-AHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 45789999999 88999999999999999999999765311 111 122221000 001
Q ss_pred hhH-------------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 498 WFD-------------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 498 ~~~-------------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
..+ .++..++...........+|+++ +++..+.+++.+|+++||||||+|+|+.
T Consensus 98 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~ 177 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 111 12222344333444556677765 5566667789999999999999999998
Q ss_pred HHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
....+.. ++..+.+ .|.+ +|++||+.+.. .+|+++..+.+|++..+
T Consensus 178 ~~~~l~~-~L~~l~~~~~~t-iii~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 178 HQIDLLE-LLSELNREKGYT-LAAVLHDLNQACRYASHLIALREGKIVAQ 225 (265)
T ss_pred HHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 8887765 4555655 4776 99999998754 79999999999998654
No 154
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.76 E-value=1.1e-17 Score=194.62 Aligned_cols=148 Identities=15% Similarity=0.154 Sum_probs=99.9
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc----------ccccccc--cccchhH-------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSEY--AKVPWFD------- 500 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~----------~vpa~~~--~~i~~~~------- 500 (844)
+++.++.++++. .+|..+||+|+||+|||||||+|++..... .|. ++++... ....+++
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~-~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~ 92 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD-SGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFG 92 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC-CCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhH
Confidence 578899999999 778889999999999999999997543211 111 1111000 0001111
Q ss_pred --------------------------------------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCC
Q 003142 501 --------------------------------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTS 535 (844)
Q Consensus 501 --------------------------------------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~ 535 (844)
.++..+|..+. ...++++||+.+ |+..+.++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~ 171 (530)
T COG0488 93 ELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEE 171 (530)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcC
Confidence 11222333333 566788998665 55666677899
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeE
Q 003142 536 QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENAC 595 (844)
Q Consensus 536 p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~ 595 (844)
|++||||||||+||. .++. .+.++|.++.+| +|+||||.+|. ..|.++..+.+|.
T Consensus 172 pDlLLLDEPTNHLD~---~~i~-WLe~~L~~~~gt-viiVSHDR~FLd~V~t~I~~ld~g~ 227 (530)
T COG0488 172 PDLLLLDEPTNHLDL---ESIE-WLEDYLKRYPGT-VIVVSHDRYFLDNVATHILELDRGK 227 (530)
T ss_pred CCEEEEcCCCcccCH---HHHH-HHHHHHHhCCCc-EEEEeCCHHHHHHHhhheEEecCCc
Confidence 999999999999998 3332 356677777666 99999999998 4777776666553
No 155
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.76 E-value=1.9e-18 Score=174.67 Aligned_cols=148 Identities=19% Similarity=0.165 Sum_probs=101.6
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccccccc---------ccccchhHHHh--hhCCchhh
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE---------YAKVPWFDSVF--ADIGDEQS 511 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~---------~~~i~~~~~i~--~~ig~~q~ 511 (844)
.+..+++|+ .+|++++|+||||+|||||||+|+++.. +..|....... ...+.++.+-. ......++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 94 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNN 94 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHh
Confidence 689999999 8899999999999999999999976532 22232111000 00111111100 01122222
Q ss_pred HhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccc
Q 003142 512 LSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590 (844)
Q Consensus 512 i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~ 590 (844)
+ ...+|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++..+. .+.| +|++||+.++...|+++..
T Consensus 95 i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~-~l~~~~-~~~t-ii~~sh~~~~~~~~d~~~~ 168 (178)
T cd03247 95 L---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS-LIFEVL-KDKT-LIWITHHLTGIEHMDKILF 168 (178)
T ss_pred h---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH-HHHHHc-CCCE-EEEEecCHHHHHhCCEEEE
Confidence 2 45677655 55666677899999999999999999977777654 455554 4776 9999999988888888888
Q ss_pred eeeeEEEE
Q 003142 591 FENACMEF 598 (844)
Q Consensus 591 v~ng~v~f 598 (844)
+.+|.+..
T Consensus 169 l~~g~i~~ 176 (178)
T cd03247 169 LENGKIIM 176 (178)
T ss_pred EECCEEEe
Confidence 88888754
No 156
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.7e-18 Score=186.73 Aligned_cols=155 Identities=16% Similarity=0.148 Sum_probs=108.6
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------------cccccccc-c-
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY-A- 494 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------------~~vpa~~~-~- 494 (844)
+.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .+++.... .
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 97 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP-TEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL 97 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-CCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc
Confidence 3589999999 89999999999999999999999765321 111 12222100 0
Q ss_pred -ccchhHH---------------------HhhhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 495 -KVPWFDS---------------------VFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 495 -~i~~~~~---------------------i~~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
...+.+. ++..++.. .........+|+++ +++..+.+++.+|++|||||||+|||+
T Consensus 98 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~ 177 (288)
T PRK13643 98 FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177 (288)
T ss_pred ccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCH
Confidence 0011111 12223332 22334445677755 556666678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
.....+. .++..+.+.|.| ||++|||.++. .+|+++..+.+|.+.++.
T Consensus 178 ~~~~~l~-~~l~~l~~~g~t-il~vtHd~~~~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 178 KARIEMM-QLFESIHQSGQT-VVLVTHLMDDVADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHHH-HHHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 7777765 566677767887 99999998876 699999999999998754
No 157
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.2e-18 Score=185.93 Aligned_cols=155 Identities=16% Similarity=0.200 Sum_probs=108.5
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------------cccccccc-cc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY-AK 495 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------------~~vpa~~~-~~ 495 (844)
..++.+++|+ .+|++++|+||||||||||||+|+++.... .| .++|.... ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT-TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL 98 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEECccccccchHHHHHhheEEEecChHhcc
Confidence 4699999999 899999999999999999999997643211 11 12222100 00
Q ss_pred c--chhH---------------------HHhhhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 496 V--PWFD---------------------SVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 496 i--~~~~---------------------~i~~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
+ .+.+ .++..+|.. +........+|+++ +++..+.+++.+|++|||||||+|||+
T Consensus 99 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~ 178 (286)
T PRK13646 99 FEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178 (286)
T ss_pred chhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 0 1111 122334443 33445566778766 455666677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 551 LEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
.....+. .++..+.+ .|.| ||++||+.++. .+|+++..+.+|.+..+.
T Consensus 179 ~~~~~l~-~~l~~l~~~~g~t-vl~vtH~~~~~~~~~dri~~l~~G~i~~~g 228 (286)
T PRK13646 179 QSKRQVM-RLLKSLQTDENKT-IILVSHDMNEVARYADEVIVMKEGSIVSQT 228 (286)
T ss_pred HHHHHHH-HHHHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 7777765 55666654 4787 99999998876 689999999999987543
No 158
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.76 E-value=3.1e-18 Score=179.95 Aligned_cols=152 Identities=13% Similarity=0.161 Sum_probs=103.0
Q ss_pred eeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh---cccc-------------------ccccccc----cccch
Q 003142 446 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA---KSGL-------------------HILSSEY----AKVPW 498 (844)
Q Consensus 446 ~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~---q~G~-------------------~vpa~~~----~~i~~ 498 (844)
..+++|+ .+|++++|+||||+|||||||+|+++.... ..|. +++.... ..+..
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 4677888 788999999999999999999998765330 1221 1221100 00111
Q ss_pred hH---------------------HHhhhCCch---hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 499 FD---------------------SVFADIGDE---QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 499 ~~---------------------~i~~~ig~~---q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
.+ .++..++.. .........+|+++ +++..+.+++.+|+++||||||+|+|+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~ 161 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 01 111222232 22344456677765 556666678899999999999999999777
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 554 TALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 554 ~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
..+.. ++..+.+ .|.| ||++||+.+.. .+|+++..+.+|.+..+
T Consensus 162 ~~l~~-~l~~~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 207 (230)
T TIGR02770 162 ARVLK-LLRELRQLFGTG-ILLITHDLGVVARIADEVAVMDDGRIVER 207 (230)
T ss_pred HHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 77754 4555555 4776 99999998766 68999999999998754
No 159
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.76 E-value=4.2e-18 Score=177.67 Aligned_cols=151 Identities=20% Similarity=0.265 Sum_probs=104.8
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------cccccccc--cc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY--AK 495 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~--~~ 495 (844)
..++++++|. .+|++++|+||||+|||||+++|+++... ..| .++|.... ..
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV-QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF 96 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence 5689999999 88999999999999999999999764211 111 11221100 00
Q ss_pred cch----------------------hHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 496 VPW----------------------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 496 i~~----------------------~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
... +..++..++....+......+|+++ +++..+.+++.+|+++|||||++|+|+..
T Consensus 97 ~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~ 176 (220)
T TIGR02982 97 LTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176 (220)
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 011 1112233444444455556677765 55666667899999999999999999977
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEE
Q 003142 553 GTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACM 596 (844)
Q Consensus 553 ~~al~~~Ile~L~~-~g~t~vIitTHd~el~~~a~~~~~v~ng~v 596 (844)
...+.. ++..+.+ .+.+ +|++||+.++..+|+++..+.+|.+
T Consensus 177 ~~~l~~-~l~~~~~~~~~t-ii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 177 GRDVVE-LMQKLAREQGCT-ILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHH-HHHHHHHHcCCE-EEEEeCCHHHHhhCCEEEEEECCEE
Confidence 777654 5555554 5786 9999999988889999888877754
No 160
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.76 E-value=4e-18 Score=182.06 Aligned_cols=155 Identities=16% Similarity=0.247 Sum_probs=107.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------------------c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------------------L 486 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------------------~ 486 (844)
++.++.+++|+ .+|++++|+||||+||||||++|+++... ..| .
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-SEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 45789999999 89999999999999999999999765321 111 1
Q ss_pred cccccccc--ccchhHHH----------------------hhhCCchhhH-hhhhhhhhHHh-hHHHHHHHhCCCCcEEE
Q 003142 487 HILSSEYA--KVPWFDSV----------------------FADIGDEQSL-SQSLSTFSGHL-KQIGNIISQSTSQSLVL 540 (844)
Q Consensus 487 ~vpa~~~~--~i~~~~~i----------------------~~~ig~~q~i-~~~lstfS~~~-~rl~~il~~a~~p~LLL 540 (844)
++|..... .....+.+ +..+|..... ......+|+++ +++..+.+++.+|+++|
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLL 175 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 12210000 01111111 2223333222 33445677765 55666667899999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhccccceeeeEEEEe
Q 003142 541 LDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 599 (844)
Q Consensus 541 LDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~-~a~~~~~v~ng~v~fd 599 (844)
|||||+|||+.....+. .++..+.+.|.+ +|++||+.++.. +|+++..+.+|++...
T Consensus 176 lDEPt~~LD~~~~~~l~-~~l~~l~~~g~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 176 FDEPTSALDPELVGEVL-RIMQQLAEEGKT-MVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred EeCCcccCCHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999997777775 566667767887 999999988764 8999999999988754
No 161
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.76 E-value=2.6e-18 Score=178.87 Aligned_cols=152 Identities=16% Similarity=0.083 Sum_probs=103.1
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccc-ccchh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA-KVPWF 499 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~-~i~~~ 499 (844)
+.++.+++|. .+|++++|+|||||||||||++|+++... ..| .+++..... ...+.
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 95 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP-TSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLR 95 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHH
Confidence 4689999999 88999999999999999999999765321 111 122221000 00111
Q ss_pred HH---------------HhhhCCchhhHhhh-----------hhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 500 DS---------------VFADIGDEQSLSQS-----------LSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 500 ~~---------------i~~~ig~~q~i~~~-----------lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
+. .+..++..+.+... ...+|+++ +++..+.+++.+|+++||||||+|||+..
T Consensus 96 e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~ 175 (220)
T cd03245 96 DNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNS 175 (220)
T ss_pred HHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11 11222332222221 24678765 55666667889999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
...+.. ++..+.+. .+ ||++||+.++..+|+++..+.+|.+..
T Consensus 176 ~~~l~~-~l~~~~~~-~t-ii~~sH~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 176 EERLKE-RLRQLLGD-KT-LIIITHRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred HHHHHH-HHHHhcCC-CE-EEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence 877765 45555543 66 999999998888999999998888753
No 162
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.2e-18 Score=186.12 Aligned_cols=153 Identities=12% Similarity=0.098 Sum_probs=104.1
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------------------------ccccccccc--
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------------LHILSSEYA-- 494 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------------------------~~vpa~~~~-- 494 (844)
.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.....
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 103 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS-ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL 103 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence 589999999 88999999999999999999999765321 111 122221100
Q ss_pred -ccchhHH---------------------HhhhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 495 -KVPWFDS---------------------VFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 495 -~i~~~~~---------------------i~~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
...+.+. ++..++.. .......+.+|+++ +++..+.+++.+|++|||||||+|||+
T Consensus 104 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~ 183 (289)
T PRK13645 104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183 (289)
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 0011111 11222331 22333445677766 456666678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 551 LEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.....+.. ++..+.+ .|.+ ||++||+.+.. .+|+++..+.+|.+..+
T Consensus 184 ~~~~~l~~-~l~~~~~~~~~t-iiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 184 KGEEDFIN-LFERLNKEYKKR-IIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHH-HHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 77777654 5555544 4776 99999998765 68999999999988654
No 163
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=1.5e-18 Score=174.35 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=94.9
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccc----------cccchhHHHhhhCCchhhH
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY----------AKVPWFDSVFADIGDEQSL 512 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~----------~~i~~~~~i~~~ig~~q~i 512 (844)
.++.+++|. .+|++++|+||||+|||||||+|+++... ..|........ ..+.++.+-...+ ..++
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~--~~t~ 92 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLF--SGTI 92 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhc--cchH
Confidence 688899999 88999999999999999999999765432 22321111000 0111111100001 0122
Q ss_pred hhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003142 513 SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591 (844)
Q Consensus 513 ~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v 591 (844)
..++ +|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++..+.+ +.+ +|++||+.+....|+++..+
T Consensus 93 ~e~l--LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~-~l~~~~~-~~t-ii~~sh~~~~~~~~d~~~~l 167 (171)
T cd03228 93 RENI--LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE-ALRALAK-GKT-VIVIAHRLSTIRDADRIIVL 167 (171)
T ss_pred HHHh--hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH-HHHHhcC-CCE-EEEEecCHHHHHhCCEEEEE
Confidence 2232 67655 55666667889999999999999999977777754 5555543 676 99999998887667777666
Q ss_pred eee
Q 003142 592 ENA 594 (844)
Q Consensus 592 ~ng 594 (844)
.+|
T Consensus 168 ~~g 170 (171)
T cd03228 168 DDG 170 (171)
T ss_pred cCC
Confidence 554
No 164
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.4e-18 Score=184.92 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=106.5
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------------cccccccc-c-
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------------LHILSSEY-A- 494 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------------~~vpa~~~-~- 494 (844)
+.++.+++|+ ..|++++|+||||||||||||+|+++... ..| .++|.... .
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP-TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccccccCHHHHHhheEEEeeChhhhh
Confidence 3589999999 88999999999999999999999765311 111 12232110 0
Q ss_pred -ccchhHH---------------------HhhhCCchh-hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 495 -KVPWFDS---------------------VFADIGDEQ-SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 495 -~i~~~~~---------------------i~~~ig~~q-~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
.....+. ++..++... ........+|+++ +++..+.+++.+|++|||||||+|||+
T Consensus 99 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 178 (280)
T PRK13649 99 FEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDP 178 (280)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 0011111 112233331 2344456678766 456666678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.....+.. ++..+.+.|.| ||++||+.++. .+|+++..+.+|.+...
T Consensus 179 ~~~~~l~~-~l~~~~~~~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 179 KGRKELMT-LFKKLHQSGMT-IVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHH-HHHHHHHCCCE-EEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 77777654 55556666787 99999998866 68999999999998654
No 165
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.76 E-value=4e-18 Score=183.29 Aligned_cols=154 Identities=16% Similarity=0.087 Sum_probs=105.0
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------cccccccc----ccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY----AKV 496 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~----~~i 496 (844)
..++++++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ...
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 104 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-TSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ 104 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcch
Confidence 4689999999 89999999999999999999999765321 111 12222110 000
Q ss_pred chh----------------------HHHhhhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 497 PWF----------------------DSVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 497 ~~~----------------------~~i~~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
... ..++..++.. .......+.+|+++ +++..+.+++.+|++|||||||+|||+..
T Consensus 105 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 184 (267)
T PRK15112 105 RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM 184 (267)
T ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence 000 1112233331 22233345677765 55666667899999999999999999977
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
...+.. ++..+.+ .|.+ ||++||+.+.. .+|+++..+.+|.+..+
T Consensus 185 ~~~l~~-~l~~~~~~~g~t-viivsH~~~~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 185 RSQLIN-LMLELQEKQGIS-YIYVTQHLGMMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHHHH-HHHHHHHHcCcE-EEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 777654 4455554 4776 99999998776 47999999999998754
No 166
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.76 E-value=2.7e-18 Score=199.63 Aligned_cols=155 Identities=12% Similarity=0.073 Sum_probs=110.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------cccccccc-----
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYA----- 494 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~~~~----- 494 (844)
++.++++++|+ .+|++++|+||||||||||||+|+++... ..|. +++.....
T Consensus 15 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p-~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 15 DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL-LSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 45689999999 88999999999999999999999765321 1111 11110000
Q ss_pred -----ccch-------------hHHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 495 -----KVPW-------------FDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 495 -----~i~~-------------~~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
.+.. +..++..++..+......+++|++++ ++..+.+++.+|++|||||||+|||+.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 173 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQ 173 (490)
T ss_pred chhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence 0000 11233445555555666778888765 4556667789999999999999999977777
Q ss_pred HHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 556 LGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 556 l~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+. .++..+.+.|.| ||++||+.+.. .+|+++..+.+|++.+.
T Consensus 174 l~-~~l~~~~~~g~t-vii~tH~~~~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 174 LA-ELLASLHQSGIT-LVLVLNRFDEIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred HH-HHHHHHHhcCCe-EEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence 75 455666667887 99999998765 68999999999998654
No 167
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4e-18 Score=191.85 Aligned_cols=157 Identities=13% Similarity=0.146 Sum_probs=111.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc-------------------cccccc--ccccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSE--YAKVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~-------------------~vpa~~--~~~i~~~ 499 (844)
+..++++++|+ ..|++++|+||||||||||||+|+++..... |. +++... ...+.+.
T Consensus 31 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~-G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 109 (377)
T PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA-GQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109 (377)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH
Confidence 45688999999 8899999999999999999999987642211 10 112100 0011111
Q ss_pred HH---------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 500 DS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 500 ~~---------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
++ ++..++...........+|+++ +|++.+.+++.+|++||||||++|||+.....+.
T Consensus 110 eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~ 189 (377)
T PRK11607 110 QNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQ 189 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11 2223344333444556677755 5667777889999999999999999998888876
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 558 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 558 ~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
..+.+.+.+.|.| +|++|||.+.+ .+|+++..+.+|++...+
T Consensus 190 ~~l~~l~~~~g~t-ii~vTHd~~ea~~laDri~vl~~G~i~~~g 232 (377)
T PRK11607 190 LEVVDILERVGVT-CVMVTHDQEEAMTMAGRIAIMNRGKFVQIG 232 (377)
T ss_pred HHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEeCCEEEEEc
Confidence 6666655666887 99999998765 799999999999987543
No 168
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.76 E-value=4.5e-18 Score=191.26 Aligned_cols=156 Identities=18% Similarity=0.173 Sum_probs=110.3
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-----------------------------ccccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------------LHILS 490 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-----------------------------~~vpa 490 (844)
+...+.++++|+ ..|++++|+||||||||||||+|+++... ..| .+++.
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p-~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV-SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 466789999999 89999999999999999999999654321 111 11121
Q ss_pred ccccc---cchhHH---------------------HhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCC
Q 003142 491 SEYAK---VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 491 ~~~~~---i~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~ 545 (844)
.... ..+.++ ++..+|...........+|+++++ +..+.+++.+|++|||||||
T Consensus 114 -~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 114 -KFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred -CCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 1100 111111 223334444444556678887654 55666789999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+||||.....+...+.+...+.+.| +|++|||.+.. .+|+++..+.+|.+...
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~~~T-II~iTHdl~e~~~l~DrI~vl~~G~iv~~ 246 (382)
T TIGR03415 193 SALDPLIRTQLQDELLELQAKLNKT-IIFVSHDLDEALKIGNRIAIMEGGRIIQH 246 (382)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999988888876555443334887 99999998875 79999999999998654
No 169
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.76 E-value=4.6e-18 Score=181.68 Aligned_cols=156 Identities=17% Similarity=0.112 Sum_probs=107.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-----------------------------cccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----------------------------SGLHILSS 491 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-----------------------------~G~~vpa~ 491 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++..... ...++|..
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 18 PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 35689999999 8899999999999999999999975421100 01123321
Q ss_pred ccc----ccchh----------------------HHHhhhCCchh-hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEec
Q 003142 492 EYA----KVPWF----------------------DSVFADIGDEQ-SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDE 543 (844)
Q Consensus 492 ~~~----~i~~~----------------------~~i~~~ig~~q-~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDE 543 (844)
... .+... ..++..++... .......++|+++ +++..+.+++.+|+++||||
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE 177 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE 177 (258)
T ss_pred cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 100 00000 11223344432 3445556777765 55666667899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHHh-hhccccceeeeEEEEe
Q 003142 544 IGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 599 (844)
Q Consensus 544 P~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~~-~a~~~~~v~ng~v~fd 599 (844)
||+|||+.....+... +..+.. .|.+ +|++||+.++.. +|+++..+.+|.+...
T Consensus 178 Pt~~LD~~~~~~l~~~-l~~~~~~~~~t-ii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 178 PTGGLDVSVQARLLDL-LRGLVRELGLA-VVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred CcccCCHHHHHHHHHH-HHHHHHhcCcE-EEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999777777654 445544 4776 999999988874 8999999999998654
No 170
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.76 E-value=4.8e-18 Score=181.25 Aligned_cols=155 Identities=14% Similarity=0.184 Sum_probs=106.1
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh---ccc-------------------ccccccccccc---
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA---KSG-------------------LHILSSEYAKV--- 496 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~---q~G-------------------~~vpa~~~~~i--- 496 (844)
+.++.+++|. .+|++++|+||||+|||||||+|+++.... ..| .++|......+
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 4689999999 889999999999999999999998764320 112 12222110000
Q ss_pred -chhH-------------------HHhhhCCchh---hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 497 -PWFD-------------------SVFADIGDEQ---SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 497 -~~~~-------------------~i~~~ig~~q---~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
.+.+ .++..++... .+......+|+++ +++..+.+++.+|++|||||||+|||+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~ 175 (254)
T PRK10418 96 HTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVA 175 (254)
T ss_pred ccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence 0001 1112223222 1234456677755 55666677899999999999999999977
Q ss_pred HHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
...+.. ++..+.+ .|.+ ||++||+.+.. .+|+++..+.+|++..+
T Consensus 176 ~~~l~~-~L~~~~~~~g~t-il~~sH~~~~~~~~~d~v~~l~~G~i~~~ 222 (254)
T PRK10418 176 QARILD-LLESIVQKRALG-MLLVTHDMGVVARLADDVAVMSHGRIVEQ 222 (254)
T ss_pred HHHHHH-HHHHHHHhcCcE-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 777754 5555544 4776 99999998776 68999999999998754
No 171
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.7e-18 Score=183.22 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=105.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh-----------------cccccccccccc----ccch-
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-----------------KSGLHILSSEYA----KVPW- 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-----------------q~G~~vpa~~~~----~i~~- 498 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++.... ....++|..... ...+
T Consensus 19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~ 98 (272)
T PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVE 98 (272)
T ss_pred CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchh
Confidence 45789999999 889999999999999999999997652110 001122221100 0000
Q ss_pred ------------------------hHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 499 ------------------------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 499 ------------------------~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
....+..++...........+|+++ +++..+.+++.+|++|||||||+|||+...
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~ 178 (272)
T PRK15056 99 DVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178 (272)
T ss_pred hheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 0112233444444445556778766 556666678999999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 554 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 554 ~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
..+. .++..+.+.|.+ ||++||+.+.. .+|+++..+ +|++...
T Consensus 179 ~~l~-~~L~~~~~~g~t-viivsH~~~~~~~~~d~v~~~-~G~i~~~ 222 (272)
T PRK15056 179 ARII-SLLRELRDEGKT-MLVSTHNLGSVTEFCDYTVMV-KGTVLAS 222 (272)
T ss_pred HHHH-HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 7775 455666666887 99999998655 688877544 8887654
No 172
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.6e-18 Score=183.64 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=107.8
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-----------------------cccccccc---cc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY---AK 495 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-----------------------~~vpa~~~---~~ 495 (844)
..+..+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP-TSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA 93 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc
Confidence 4689999999 89999999999999999999999764321 111 12222110 00
Q ss_pred cchhHH---------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 496 VPWFDS---------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 496 i~~~~~---------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
..+.+. ++..++...........+|+++ +++..+.+++.+|+++||||||+|+|+...
T Consensus 94 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~ 173 (275)
T PRK13639 94 PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173 (275)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 111111 1222333333334456677765 456666678999999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 554 TALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 554 ~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
..+.. ++..+.+.|.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 174 ~~l~~-~l~~l~~~~~t-il~vtH~~~~~~~~~d~i~~l~~G~i~~~g 219 (275)
T PRK13639 174 SQIMK-LLYDLNKEGIT-IIISTHDVDLVPVYADKVYVMSDGKIIKEG 219 (275)
T ss_pred HHHHH-HHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 87764 55566666887 99999998876 589999999999987653
No 173
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.76 E-value=3.9e-18 Score=199.79 Aligned_cols=155 Identities=20% Similarity=0.203 Sum_probs=107.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH-Hhhcccc---------------------------------
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGL--------------------------------- 486 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~-~~~q~G~--------------------------------- 486 (844)
++.++++++|. ..|++++|+||||||||||||+|+++. +.+..|.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 45789999999 889999999999999999999998764 1121121
Q ss_pred ---------------------cccccccc---ccchhHH---------------------HhhhCCchhhHhhhhhhhhH
Q 003142 487 ---------------------HILSSEYA---KVPWFDS---------------------VFADIGDEQSLSQSLSTFSG 521 (844)
Q Consensus 487 ---------------------~vpa~~~~---~i~~~~~---------------------i~~~ig~~q~i~~~lstfS~ 521 (844)
+++..... .....+. ++..++........++++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 171 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSG 171 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCH
Confidence 11110000 0011111 12223333333445567887
Q ss_pred Hhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 522 HLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF-AESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 522 ~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L-~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
+++ ++..+.+++.+|++|||||||+|||+.....+.. +++.+ .+.|.| ||++|||.++. .+|+++..+.+|.+..
T Consensus 172 Gq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~t-viivtHd~~~~~~~~d~i~~l~~G~i~~ 249 (520)
T TIGR03269 172 GEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN-ALEEAVKASGIS-MVLTSHWPEVIEDLSDKAIWLENGEIKE 249 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHH-HHHHHHHhcCcE-EEEEeCCHHHHHHhcCEEEEEeCCEEee
Confidence 665 5566667899999999999999999988777765 55555 445887 99999998876 6899999999998864
No 174
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.76 E-value=2.3e-18 Score=188.88 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=109.9
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcc-----cc---cccccc------------ccccchhH---
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-----GL---HILSSE------------YAKVPWFD--- 500 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~-----G~---~vpa~~------------~~~i~~~~--- 500 (844)
+.+++++. .+|++++|+||||||||||||+|+++.-.... |- .+|..+ ...+++++
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 89999999 89999999999999999999999876432210 00 011100 01111222
Q ss_pred ------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHH
Q 003142 501 ------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 561 (844)
Q Consensus 501 ------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Il 561 (844)
.+...++..+.+....+.+||++ ||++...+++.+|+++|||||+|+||+.-+..+-..|.
T Consensus 98 f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~ 177 (338)
T COG3839 98 FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177 (338)
T ss_pred hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHH
Confidence 22334455666666777888755 56777778899999999999999999988888766665
Q ss_pred HHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 562 EAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 562 e~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
+...+.|.| +|.+|||...+ .+++++..+.+|.+.-
T Consensus 178 ~lh~~l~~T-~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 178 KLHERLGTT-TIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred HHHHhcCCc-EEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 544455777 99999996554 6899998888888863
No 175
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.76 E-value=5.2e-18 Score=180.55 Aligned_cols=156 Identities=17% Similarity=0.110 Sum_probs=106.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------------ccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------------LHILS 490 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------------~~vpa 490 (844)
+..++.+++|+ ..|++++|+||||||||||||+|+++.-. ..| .+++.
T Consensus 15 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP-DHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 34688999999 88999999999999999999999765211 111 11222
Q ss_pred ccc----cccchhH----------------------HHhhhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEe
Q 003142 491 SEY----AKVPWFD----------------------SVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLD 542 (844)
Q Consensus 491 ~~~----~~i~~~~----------------------~i~~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLD 542 (844)
... ..+...+ .++..++.. .........+|+++ +++..+.+++.+|++||||
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllD 173 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMD 173 (253)
T ss_pred CcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 110 0000001 112223332 23344455677765 5566667789999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhccccceeeeEEEEe
Q 003142 543 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 599 (844)
Q Consensus 543 EP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~-~a~~~~~v~ng~v~fd 599 (844)
|||+|||+.....+...+.+...+.|.+ +|++||+.++.. +|+++..+.+|.+...
T Consensus 174 EP~~~LD~~~~~~l~~~l~~~~~~~~~t-ii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 174 EPTGGLDVSVQARLLDLLRGLVRDLGLA-VIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 9999999988887765554433445787 999999988775 8999999999988654
No 176
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.76 E-value=3.1e-18 Score=180.40 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=104.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccc-ccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA-KVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~-~i~~ 498 (844)
+.+++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ...+
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 92 (237)
T cd03252 14 GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE-NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSI 92 (237)
T ss_pred CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchH
Confidence 35689999999 889999999999999999999997653211 11 122221000 0011
Q ss_pred hHHHh---------------hhCCchh-----------hHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 499 FDSVF---------------ADIGDEQ-----------SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 499 ~~~i~---------------~~ig~~q-----------~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
.+.+. ...+..+ .+......+|++++ ++..+.+++.+|+++||||||+|||+.
T Consensus 93 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~ 172 (237)
T cd03252 93 RDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYE 172 (237)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 11110 0011111 11223456787664 556666789999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
....+.. ++..+.+ |.+ +|++||+.++...|+++..+.+|.+..+.
T Consensus 173 ~~~~l~~-~l~~~~~-~~t-iii~sH~~~~~~~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 173 SEHAIMR-NMHDICA-GRT-VIIIAHRLSTVKNADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHHHH-HHHHhcC-CCE-EEEEeCCHHHHHhCCEEEEEECCEEEEEc
Confidence 8777765 4455554 776 99999999888889999999999987543
No 177
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.76 E-value=4.4e-18 Score=177.18 Aligned_cols=153 Identities=14% Similarity=-0.006 Sum_probs=103.4
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccc--cc-----cc-c---cccchhHHHh--h-----
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI--LS-----SE-Y---AKVPWFDSVF--A----- 504 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~v--pa-----~~-~---~~i~~~~~i~--~----- 504 (844)
+|.++++|. ..|++++|+||||||||||||+|+++... ..|... .. .. . ..+...+.+. .
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~ 79 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP-DEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGL 79 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-CCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCC
Confidence 367899999 88999999999999999999999776432 223221 10 00 0 0111111110 0
Q ss_pred -----------hCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEE
Q 003142 505 -----------DIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLT 572 (844)
Q Consensus 505 -----------~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~v 572 (844)
..+.........+.+|++++ ++..+.+++.+|+++|||||++++|+.....+...+.+.+. +.+ +
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~-i 156 (213)
T PRK15177 80 DGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKG-L 156 (213)
T ss_pred CHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCc-E
Confidence 01111222334566777664 55667778999999999999999999887777655555543 355 8
Q ss_pred EEEccchhHH-hhhccccceeeeEEEEec
Q 003142 573 IATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 573 IitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
|++||++... .+|+++..+.+|.+.+..
T Consensus 157 i~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 185 (213)
T PRK15177 157 IVLTHNPRLIKEHCHAFGVLLHGKITMCE 185 (213)
T ss_pred EEEECCHHHHHHhcCeeEEEECCeEEEeC
Confidence 9999998776 589999999999987643
No 178
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.76 E-value=3e-18 Score=174.66 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=93.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-----------------------cccccccc---c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------LHILSSEY---A 494 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-----------------------~~vpa~~~---~ 494 (844)
++.++++++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... .
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP-QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 45789999999 88999999999999999999999754211 111 12222110 0
Q ss_pred ccchhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 495 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 495 ~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
...+.+ .++..++..+......+.+|+++ +++..+.+++.+|+++||||||+|+|+..
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 162 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAG 162 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 001111 12223344444445556778765 55666667899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhH
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGEL 581 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el 581 (844)
...+. .++..+.+.|.+ +|++||+.++
T Consensus 163 ~~~~~-~~l~~~~~~~~t-ili~sH~~~~ 189 (190)
T TIGR01166 163 REQML-AILRRLRAEGMT-VVISTHDVDL 189 (190)
T ss_pred HHHHH-HHHHHHHHcCCE-EEEEeecccc
Confidence 77775 455566667887 9999999764
No 179
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.75 E-value=4.3e-18 Score=199.04 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=110.7
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc----------------------ccccccc--cc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEY--AK 495 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~----------------------~vpa~~~--~~ 495 (844)
+++.++++++|. ..|++++|+||||||||||||+|+++... ..|. ++|.... ..
T Consensus 22 ~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 22 SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP-DSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 345789999999 88999999999999999999999765321 1111 2222100 00
Q ss_pred cchhH-----------------HHhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 496 VPWFD-----------------SVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 496 i~~~~-----------------~i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
+...+ .++..++..........++|+++++ +..+.+++.+|++|||||||+|||+.....+.
T Consensus 101 ~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~ 180 (510)
T PRK15439 101 LSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLF 180 (510)
T ss_pred CcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHH
Confidence 11111 1233344444445556778887654 55566789999999999999999997777775
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 558 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 558 ~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.++..+.+.|.+ ||++||+.++. .+|+++..+.+|.+..+
T Consensus 181 -~~l~~~~~~g~t-iiivtHd~~~~~~~~d~i~~l~~G~i~~~ 221 (510)
T PRK15439 181 -SRIRELLAQGVG-IVFISHKLPEIRQLADRISVMRDGTIALS 221 (510)
T ss_pred -HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 456666777887 99999998766 68999999999998654
No 180
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.75 E-value=7.3e-18 Score=178.03 Aligned_cols=155 Identities=15% Similarity=0.127 Sum_probs=108.2
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------cccccccc--cccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEY--AKVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~~--~~i~~~ 499 (844)
++.++.+++|+ .+|++++|+||||+|||||+|+|+++... ..| .++|.... ....+.
T Consensus 12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-DSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 45699999999 89999999999999999999999765311 111 12222100 000111
Q ss_pred ---------------------HHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 500 ---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 500 ---------------------~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
..++..++..+........+|+++ +++..+.+++.+|+++|||||++|+|+.....+.
T Consensus 91 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~ 170 (237)
T TIGR00968 91 DNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELR 170 (237)
T ss_pred HHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 112233444444445556678765 5566667789999999999999999997777765
Q ss_pred HHHHHHHHhc-CCeEEEEEccchhH-HhhhccccceeeeEEEEe
Q 003142 558 MSLLEAFAES-GSLLTIATTHHGEL-KTLKYSNDFFENACMEFD 599 (844)
Q Consensus 558 ~~Ile~L~~~-g~t~vIitTHd~el-~~~a~~~~~v~ng~v~fd 599 (844)
.++..+... ++| +|++||+.+. ..+|+++..+.+|.+...
T Consensus 171 -~~l~~~~~~~~~t-vli~sH~~~~~~~~~d~i~~l~~g~i~~~ 212 (237)
T TIGR00968 171 -SWLRKLHDEVHVT-TVFVTHDQEEAMEVADRIVVMSNGKIEQI 212 (237)
T ss_pred -HHHHHHHHhcCCE-EEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 455556654 776 9999999886 478999999999998654
No 181
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=8e-18 Score=179.91 Aligned_cols=155 Identities=14% Similarity=0.202 Sum_probs=104.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++... +..|. ++|....
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 45789999999 89999999999999999999999875421 01221 1121000
Q ss_pred c-ccchhHHH---------------------hhhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCC
Q 003142 494 A-KVPWFDSV---------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 494 ~-~i~~~~~i---------------------~~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~s 546 (844)
. .....+.+ +..++.. ..+......+|+++ +++..+.+++.+|+++||||||+
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 183 (258)
T PRK14268 104 PFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTS 183 (258)
T ss_pred cCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 0 00111111 1111110 11223345677655 55666677899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|+|+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 184 ~LD~~~~~~l~-~~l~~l~~-~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 184 ALDPISTARIE-DLIMNLKK-DYT-IVIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred ccCHHHHHHHH-HHHHHHhh-CCE-EEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 99998777775 45555654 676 99999998776 68999999999998654
No 182
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.75 E-value=6.6e-18 Score=188.85 Aligned_cols=149 Identities=17% Similarity=0.106 Sum_probs=102.9
Q ss_pred EEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc-------------------------ccccccc--cccchh
Q 003142 448 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEY--AKVPWF 499 (844)
Q Consensus 448 disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~-------------------------~vpa~~~--~~i~~~ 499 (844)
+++|+ ..|++++|+||||||||||||+|+++... ..|. +++.... ..+...
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p-~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP-DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 78888 78899999999999999999999765321 1111 1121000 001111
Q ss_pred H-------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHH
Q 003142 500 D-------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 559 (844)
Q Consensus 500 ~-------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~ 559 (844)
+ .++..++..........++|+++ +++..+.+++.+|++|||||||+|||+.....+..
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~- 172 (354)
T TIGR02142 94 GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP- 172 (354)
T ss_pred HHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH-
Confidence 1 12233444444445556788766 55666667899999999999999999988777765
Q ss_pred HHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 560 LLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 560 Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
++..+.+ .|.| +|++||+.+.. .+|+++..+.+|.+...
T Consensus 173 ~L~~l~~~~g~t-iiivtH~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 173 YLERLHAEFGIP-ILYVSHSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred HHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence 4455554 4787 99999998765 68999999999988643
No 183
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.75 E-value=5.4e-18 Score=180.34 Aligned_cols=151 Identities=20% Similarity=0.205 Sum_probs=104.8
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------ccccccc--cccchh-
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEY--AKVPWF- 499 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~~~--~~i~~~- 499 (844)
++.+++|+ ..|++++|+|||||||||||++|+++.. . .|. ++|.... ......
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 67888998 8899999999999999999999976531 1 121 2222100 000111
Q ss_pred -------------------HHHhhhCCchhhHhhhhhhhhHHhhHH-HHHHHhCC-------CCcEEEEecCCCCCCHHH
Q 003142 500 -------------------DSVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQST-------SQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 500 -------------------~~i~~~ig~~q~i~~~lstfS~~~~rl-~~il~~a~-------~p~LLLLDEP~sGlDp~~ 552 (844)
..++..++..+........+|+++++. ..+.+++. +|+++||||||+|||+..
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~ 168 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ 168 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence 122333444444455566788776554 44555565 679999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchh-HHhhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGE-LKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~e-l~~~a~~~~~v~ng~v~fd 599 (844)
...+. .++..+.+.|.| +|++||+.+ +..+|+++..+.+|.+..+
T Consensus 169 ~~~l~-~~L~~~~~~~~t-vi~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 169 QAALD-RLLSELCQQGIA-VVMSSHDLNHTLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred HHHHH-HHHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 77765 556666666887 999999987 5579999999999998654
No 184
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=5.4e-18 Score=172.28 Aligned_cols=155 Identities=16% Similarity=0.182 Sum_probs=105.3
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH----------------------------hhccccccccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM----------------------------MAKSGLHILSS 491 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~----------------------------~~q~G~~vpa~ 491 (844)
|.+.++.++++. ..+++++|+||+|||||||||++..+.- -.+.|+....-
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 577899999999 8899999999999999999999853210 01122211100
Q ss_pred cccccchhHHHhh---------------------hCCch----hhHhhhhhhhhHH-hhHHHHHHHhCCCCcEEEEecCC
Q 003142 492 EYAKVPWFDSVFA---------------------DIGDE----QSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 492 ~~~~i~~~~~i~~---------------------~ig~~----q~i~~~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~ 545 (844)
.....++++++-. .-.++ +.+..+...+||+ +||+..+.+++.+|++|||||||
T Consensus 98 nPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPt 177 (253)
T COG1117 98 NPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177 (253)
T ss_pred CCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcc
Confidence 1111333333311 01111 2222222346665 46667777789999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
|+|||.....+- .++..|++ .-| ||+|||.+.-+ ..+|.+..+.+|.+..
T Consensus 178 SALDPIsT~kIE-eLi~eLk~-~yT-IviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 178 SALDPISTLKIE-ELITELKK-KYT-IVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred cccCchhHHHHH-HHHHHHHh-ccE-EEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 999998888875 56666774 455 99999998766 6889999999998854
No 185
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.75 E-value=7.8e-18 Score=167.18 Aligned_cols=157 Identities=17% Similarity=0.202 Sum_probs=109.8
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccc---------cccc-ccccchhHHHhhhCCchhhH-
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI---------LSSE-YAKVPWFDSVFADIGDEQSL- 512 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~v---------pa~~-~~~i~~~~~i~~~ig~~q~i- 512 (844)
.+-.|++. +.|++++|+||+|+||||||++|+++....+....+ |+.. .+.+..-.++|+++++.+++
T Consensus 14 ~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 14 LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 35556666 778999999999999999999998876654422211 2211 11111122345555444443
Q ss_pred ------------------------------hhhhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHH
Q 003142 513 ------------------------------SQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 561 (844)
Q Consensus 513 ------------------------------~~~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Il 561 (844)
.....++||+ .+|.+.+..++.+.+++||||||+.|||.-+......+.
T Consensus 94 LGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~ 173 (231)
T COG3840 94 LGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVS 173 (231)
T ss_pred ccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHH
Confidence 3333456664 466777777899999999999999999988888765555
Q ss_pred HHHHhcCCeEEEEEccchh-HHhhhccccceeeeEEEEeccc
Q 003142 562 EAFAESGSLLTIATTHHGE-LKTLKYSNDFFENACMEFDEVK 602 (844)
Q Consensus 562 e~L~~~g~t~vIitTHd~e-l~~~a~~~~~v~ng~v~fd~~~ 602 (844)
+...+++.| ++++||..+ ...+++++..+.||.|.....+
T Consensus 174 ~l~~E~~~T-llmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~ 214 (231)
T COG3840 174 QLCDERKMT-LLMVTHHPEDAARIADRVVFLDNGRIAAQGST 214 (231)
T ss_pred HHHHhhCCE-EEEEeCCHHHHHHhhhceEEEeCCEEEeeccH
Confidence 544566887 999999965 5579999999999999876643
No 186
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=7.9e-18 Score=177.00 Aligned_cols=149 Identities=15% Similarity=0.198 Sum_probs=101.7
Q ss_pred EEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------cccccccc--cccchhHH----
Q 003142 448 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEY--AKVPWFDS---- 501 (844)
Q Consensus 448 disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~~--~~i~~~~~---- 501 (844)
+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ....+.+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP-ASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 67777 78899999999999999999999765321 111 12222110 00111111
Q ss_pred -----------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHH
Q 003142 502 -----------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 563 (844)
Q Consensus 502 -----------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~ 563 (844)
++..++....+......+|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~-~l~~ 174 (232)
T PRK10771 96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLT-LVSQ 174 (232)
T ss_pred cccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHH
Confidence 2233344444445556678765 55666667899999999999999999977777765 4445
Q ss_pred HHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 564 FAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 564 L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+.. .|.| +|++||+.++. .+|+++..+.+|.+..+
T Consensus 175 ~~~~~~~t-iii~sH~~~~~~~~~d~i~~l~~g~i~~~ 211 (232)
T PRK10771 175 VCQERQLT-LLMVSHSLEDAARIAPRSLVVADGRIAWD 211 (232)
T ss_pred HHHhcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 544 4777 99999998875 68999999999988654
No 187
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.6e-18 Score=178.38 Aligned_cols=163 Identities=19% Similarity=0.140 Sum_probs=105.9
Q ss_pred hhhccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh----------------------cccccc----
Q 003142 436 VSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----------------------KSGLHI---- 488 (844)
Q Consensus 436 ~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----------------------q~G~~v---- 488 (844)
+....+++.++.++++. ++|+-++|+|||||||||||+++++-.... ..|+.-
T Consensus 37 v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~ 116 (257)
T COG1119 37 VSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELH 116 (257)
T ss_pred eEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHH
Confidence 34445789999999999 888889999999999999999995322110 011100
Q ss_pred ---ccc----------cccccch------------hHHHhhhCCchhhHhhhhhhhhHHhhHHHHH-HHhCCCCcEEEEe
Q 003142 489 ---LSS----------EYAKVPW------------FDSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLD 542 (844)
Q Consensus 489 ---pa~----------~~~~i~~------------~~~i~~~ig~~q~i~~~lstfS~~~~rl~~i-l~~a~~p~LLLLD 542 (844)
+.. ....+++ ...++..+|......+.+.++|-+++++..| .+++.+|.|||||
T Consensus 117 ~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLD 196 (257)
T COG1119 117 ERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196 (257)
T ss_pred hhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEec
Confidence 000 0001111 1123444555555566667778766665555 5679999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 543 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 543 EP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
||++|+|......+...+.+.....+.+.+|+|||+.+.. ...++...+.+|.+..
T Consensus 197 EP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 197 EPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred CccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 9999999988877766555544444454599999997666 3444555555555543
No 188
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=4.5e-18 Score=198.68 Aligned_cols=157 Identities=12% Similarity=0.096 Sum_probs=109.7
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh-hcccc----------------------ccccccc--c
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGL----------------------HILSSEY--A 494 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~-~q~G~----------------------~vpa~~~--~ 494 (844)
+++.++++++|+ ..|++++|+||||||||||||+|+++... ...|. ++|.... .
T Consensus 16 ~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 345789999999 89999999999999999999999876432 01221 1111000 0
Q ss_pred ccchhHH------------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCC
Q 003142 495 KVPWFDS------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 495 ~i~~~~~------------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlD 549 (844)
.+...+. ++..++........++++|+++ +++..+.+++.+|++|||||||+|||
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD 175 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLT 175 (506)
T ss_pred CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 0111111 1222333333344556788766 55666667899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+.....+. .++..+.+.|.+ ||++||+.++. .+|+++..+.+|.+.++
T Consensus 176 ~~~~~~l~-~~l~~l~~~~~t-vi~~tH~~~~~~~~~d~v~~l~~G~i~~~ 224 (506)
T PRK13549 176 ESETAVLL-DIIRDLKAHGIA-CIYISHKLNEVKAISDTICVIRDGRHIGT 224 (506)
T ss_pred HHHHHHHH-HHHHHHHHCCCE-EEEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence 98777776 455566777887 99999998766 68999999999998654
No 189
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2.5e-17 Score=197.24 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=102.5
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc----------cccccc----ccccchh------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSE----YAKVPWF------ 499 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~----------~vpa~~----~~~i~~~------ 499 (844)
+++.++++++|. .+|++++|+||||||||||||+|++.... ..|. +++... ...+.++
T Consensus 12 g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p-d~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~ 90 (638)
T PRK10636 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA-DGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDRE 90 (638)
T ss_pred CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHH
Confidence 456799999999 88999999999999999999999764321 1121 111100 0011110
Q ss_pred ---------------------------------------HHHhhhCCch-hhHhhhhhhhhHHhhH-HHHHHHhCCCCcE
Q 003142 500 ---------------------------------------DSVFADIGDE-QSLSQSLSTFSGHLKQ-IGNIISQSTSQSL 538 (844)
Q Consensus 500 ---------------------------------------~~i~~~ig~~-q~i~~~lstfS~~~~r-l~~il~~a~~p~L 538 (844)
..++..+|.. ......+++||+++++ +..+.+++.+|+|
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~l 170 (638)
T PRK10636 91 YRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDL 170 (638)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCE
Confidence 0112223332 2334556788887654 5555677999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEE
Q 003142 539 VLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 597 (844)
Q Consensus 539 LLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~ 597 (844)
|||||||+|||+.....+ .+.|.+.+.+ ||+||||.++. .+|+++..+.+|.+.
T Consensus 171 LLLDEPtn~LD~~~~~~L----~~~L~~~~~t-viivsHd~~~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 171 LLLDEPTNHLDLDAVIWL----EKWLKSYQGT-LILISHDRDFLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred EEEcCCCCcCCHHHHHHH----HHHHHhCCCe-EEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence 999999999999655543 3444555676 99999998876 588888888888764
No 190
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.75 E-value=7.7e-18 Score=178.72 Aligned_cols=155 Identities=15% Similarity=0.231 Sum_probs=105.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh----cccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----q~G~-----------------------~vpa~~~ 493 (844)
+..++.+++|+ .+|++++|+||||||||||||+|+++.... ..|. ++|....
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (247)
T TIGR00972 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92 (247)
T ss_pred CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence 34688999999 899999999999999999999997664321 0121 1121000
Q ss_pred c-ccchhHHH----------------------hhhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 A-KVPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 ~-~i~~~~~i----------------------~~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
. .....+.+ +..++.. .........+|+++ +++..+.+++.+|+++||||||
T Consensus 93 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 172 (247)
T TIGR00972 93 PFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172 (247)
T ss_pred cCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0 01111111 1222333 23344455677765 5566666788999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+|+|+.....+. .++..+.+ +.| +|++||+.+.. .+|+++..+.+|++...
T Consensus 173 ~~LD~~~~~~l~-~~l~~~~~-~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 173 SALDPIATGKIE-ELIQELKK-KYT-IVIVTHNMQQAARISDRTAFFYDGELVEY 224 (247)
T ss_pred ccCCHHHHHHHH-HHHHHHHh-cCe-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999997777775 45556655 466 99999998765 68999999999998643
No 191
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=7.9e-18 Score=177.12 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=108.2
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------ccccccccc--ccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~~~--~i~~~ 499 (844)
++.++++++++ .+|++++|+||||+|||||||+|++..... .| .+++..... ...+.
T Consensus 12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT-SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 45789999999 889999999999999999999997653221 11 112211000 00111
Q ss_pred H---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 500 D---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 500 ~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
+ .++..++....+......+|+++ +++..+.+++.+|+++||||||+|+|+.....+.
T Consensus 91 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~ 170 (232)
T cd03300 91 ENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ 170 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 1 12223344444444556677655 5667777889999999999999999998877775
Q ss_pred HHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 558 MSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 558 ~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
. ++..+.+ .|.| +|++||+.+.. .+|+++..+.+|++.+.
T Consensus 171 ~-~l~~~~~~~~~t-iii~sh~~~~~~~~~d~i~~l~~G~~~~~ 212 (232)
T cd03300 171 L-ELKRLQKELGIT-FVFVTHDQEEALTMSDRIAVMNKGKIQQI 212 (232)
T ss_pred H-HHHHHHHHcCCE-EEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 4 5555655 4787 99999998765 68999999999988654
No 192
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.75 E-value=5.6e-18 Score=197.63 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=108.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------cccccccc--ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~~--~~i 496 (844)
++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .+++.... ..+
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK10762 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD-AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94 (501)
T ss_pred CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC
Confidence 45789999999 889999999999999999999997653211 11 11221000 001
Q ss_pred chhH-------------------------HHhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 497 PWFD-------------------------SVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 497 ~~~~-------------------------~i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
...+ .++..++..+......+++|+++++ +..+.+++.+|++|||||||+|||+
T Consensus 95 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 174 (501)
T PRK10762 95 TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTD 174 (501)
T ss_pred cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCH
Confidence 1111 1122233333334455678887654 5555678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.....+. .++..+.+.|.+ ||++|||.++. .+|+++..+.+|.+..+
T Consensus 175 ~~~~~l~-~~l~~l~~~~~t-vii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 175 TETESLF-RVIRELKSQGRG-IVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred HHHHHHH-HHHHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 7777775 466667777887 99999998766 69999999999998653
No 193
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.75 E-value=7e-18 Score=176.72 Aligned_cols=154 Identities=17% Similarity=0.210 Sum_probs=105.3
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh--hcccc------------------ccccccc--cccchh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSGL------------------HILSSEY--AKVPWF 499 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~--~q~G~------------------~vpa~~~--~~i~~~ 499 (844)
+.+.++++|+ .+|++++|+||||||||||+|+|+++... +..|. ++|.... ..+.+.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 5789999999 88999999999999999999999776430 11221 1222100 001111
Q ss_pred HHH-------------------------hhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 500 DSV-------------------------FADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 500 ~~i-------------------------~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
+.+ +..++...........+|+++ +++..+.+++.+|+++||||||+|+|+...
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~ 179 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence 111 111111111222345567655 566677788999999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccch--hHHhhhccccceeeeEEEE
Q 003142 554 TALGMSLLEAFAESGSLLTIATTHHG--ELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 554 ~al~~~Ile~L~~~g~t~vIitTHd~--el~~~a~~~~~v~ng~v~f 598 (844)
..+.. ++..+.+.|.| +|++||+. ++..+|+++..+.+|.+..
T Consensus 180 ~~~~~-~l~~~~~~~~t-iii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 180 LNLVS-TLSQLARRNRI-VILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred HHHHH-HHHHHHHCCCE-EEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 77764 55556666776 99999996 5678999999999998864
No 194
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=6.1e-18 Score=174.54 Aligned_cols=156 Identities=12% Similarity=0.096 Sum_probs=103.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh--hccccc-ccc--------ccccccchhH---HHhhhC
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSGLH-ILS--------SEYAKVPWFD---SVFADI 506 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~--~q~G~~-vpa--------~~~~~i~~~~---~i~~~i 506 (844)
++.++.+++|. .+|++++|+|||||||||||++|+++... +..|.. +.. .....+.+.. .++..+
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 56799999999 89999999999999999999999876541 222311 000 0000111111 112222
Q ss_pred CchhhH--------hhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEc
Q 003142 507 GDEQSL--------SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATT 576 (844)
Q Consensus 507 g~~q~i--------~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~-g~t~vIitT 576 (844)
...+++ ......+|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++..+.+. +.+++|++|
T Consensus 99 tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~-~l~~~~~~~~~t~ii~~~ 177 (202)
T cd03233 99 TVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK-CIRTMADVLKTTTFVSLY 177 (202)
T ss_pred cHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHH-HHHHHHHhCCCEEEEEEc
Confidence 333332 23445677655 55667778899999999999999999977777764 55555544 565244456
Q ss_pred cch-hHHhhhccccceeeeEEEE
Q 003142 577 HHG-ELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 577 Hd~-el~~~a~~~~~v~ng~v~f 598 (844)
|+. ++..+|+++..+.+|.+..
T Consensus 178 h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 178 QASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred CCHHHHHHhCCeEEEEECCEEEe
Confidence 664 5668999999999998854
No 195
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.75 E-value=7.6e-18 Score=196.90 Aligned_cols=155 Identities=12% Similarity=0.115 Sum_probs=109.2
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------cccccccc--ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~~--~~i 496 (844)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|.... ..+
T Consensus 17 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT-KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC-ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 45789999999 899999999999999999999997653210 11 12222100 001
Q ss_pred chhHH----------------------------HhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCC
Q 003142 497 PWFDS----------------------------VFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAG 547 (844)
Q Consensus 497 ~~~~~----------------------------i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sG 547 (844)
...+. ++..+|..+......+++|+++++ +..+.+++.+|++|||||||+|
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~ 175 (510)
T PRK09700 96 TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSS 175 (510)
T ss_pred cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 11111 122233333334456678887654 5555678999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 548 lDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
||+.....+. .++..+.+.|.| ||++||+.++. .+|+++..+.+|.+.++
T Consensus 176 LD~~~~~~l~-~~l~~l~~~g~t-iiivsHd~~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 176 LTNKEVDYLF-LIMNQLRKEGTA-IVYISHKLAEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred CCHHHHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence 9997777775 566667777887 99999998776 68999999999998664
No 196
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=9.5e-18 Score=185.56 Aligned_cols=155 Identities=12% Similarity=0.052 Sum_probs=107.8
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh---hccc-------------------------cccccccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM---AKSG-------------------------LHILSSEY 493 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~---~q~G-------------------------~~vpa~~~ 493 (844)
..++++++|+ ..|++++|+||||||||||+++|.++.-. ...| .++|+...
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 4589999999 89999999999999999999999765421 0111 12222110
Q ss_pred c----ccchh----------------------HHHhhhCCch---hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEec
Q 003142 494 A----KVPWF----------------------DSVFADIGDE---QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDE 543 (844)
Q Consensus 494 ~----~i~~~----------------------~~i~~~ig~~---q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDE 543 (844)
. .+.+. ..++..+|+. ..+......+|++|+ |+..+.+++.+|+|||+||
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0 00000 1122333432 123445567888775 5566667899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 544 IGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 544 P~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
||+|||+.....+.. ++..+.+ .|.+ +|++|||..+. .+|+++..+.+|.+...
T Consensus 180 Pts~LD~~~~~~il~-lL~~l~~~~g~t-il~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 180 PTTALDVTIQAQIIE-LLLELQQKENMA-LVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred CCCCCCHHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999977777764 5555654 5887 99999998877 68999999999988643
No 197
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.75 E-value=7.3e-18 Score=176.65 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=100.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccc-ccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA-KVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~-~i~~ 498 (844)
++.+..+++|. .+|++++|+|||||||||||++|+++... ..| .+++..... ...+
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv 97 (225)
T PRK10247 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP-TSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTV 97 (225)
T ss_pred CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCeEEECCEEcCcCCHHHHHhccEEEecccccccccH
Confidence 45789999999 89999999999999999999999765321 111 122221000 0011
Q ss_pred hH-------------------HHhhhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 499 FD-------------------SVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 499 ~~-------------------~i~~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
.+ .++..++.. .........+|+++ +++..+.+++.+|+++||||||+|||+.....+.
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 177 (225)
T PRK10247 98 YDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177 (225)
T ss_pred HHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 11 222333442 22344456677655 5566667789999999999999999997777765
Q ss_pred HHHHHHHH-hcCCeEEEEEccchhHHhhhcccccee
Q 003142 558 MSLLEAFA-ESGSLLTIATTHHGELKTLKYSNDFFE 592 (844)
Q Consensus 558 ~~Ile~L~-~~g~t~vIitTHd~el~~~a~~~~~v~ 592 (844)
. ++..+. +.|.+ +|++||+.++..+|+++..+.
T Consensus 178 ~-~l~~~~~~~~~t-vii~sh~~~~~~~~d~i~~l~ 211 (225)
T PRK10247 178 E-IIHRYVREQNIA-VLWVTHDKDEINHADKVITLQ 211 (225)
T ss_pred H-HHHHHHHhcCCE-EEEEECChHHHHhCCEEEEEe
Confidence 4 445554 45786 999999988877777776663
No 198
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.74 E-value=6.8e-18 Score=194.18 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=109.6
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccc--------cc--ccccccchhH-----------
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI--------LS--SEYAKVPWFD----------- 500 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~v--------pa--~~~~~i~~~~----------- 500 (844)
+.++.+++|. .+|++++|+|||||||||||++|+++... ..|... +. .....+...+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P-~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~ 115 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-NKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGL 115 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCC
Confidence 4689999999 89999999999999999999999775422 222110 00 0000011111
Q ss_pred ----------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 003142 501 ----------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 569 (844)
Q Consensus 501 ----------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~ 569 (844)
.++..++....+......+|++++ ++..+++++.+|++|||||||+|||+.....+.. ++..+.+.|+
T Consensus 116 ~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~Lle-lL~el~~~G~ 194 (549)
T PRK13545 116 TKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLD-KMNEFKEQGK 194 (549)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHHhCCC
Confidence 123334555555566677888765 4566667899999999999999999987777764 5555667788
Q ss_pred eEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 570 LLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 570 t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
| ||++||+.++. .+|+++..+.+|.+...
T Consensus 195 T-IIIVSHdl~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 195 T-IFFISHSLSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred E-EEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 7 99999998766 68999999999988643
No 199
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.3e-17 Score=177.64 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=104.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH--h--hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~--~--~q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|. .+|++++|+||||||||||||+|+++.- . +..|. ++|.. .
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~-~ 96 (253)
T PRK14242 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQK-P 96 (253)
T ss_pred CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecC-C
Confidence 45689999999 8899999999999999999999987631 1 12221 11210 0
Q ss_pred ccc--chhHHHh----------------------hhCCchh----hHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecC
Q 003142 494 AKV--PWFDSVF----------------------ADIGDEQ----SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 494 ~~i--~~~~~i~----------------------~~ig~~q----~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP 544 (844)
..+ .+.+.+. ..++..+ ........+|++++ ++..+.+++.+|++||||||
T Consensus 97 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEP 176 (253)
T PRK14242 97 NPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEP 176 (253)
T ss_pred CCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 000 1111111 1112111 11223456777664 55666678899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|+|||+.....+.. ++..+.+ +.| ||++||+.+.. .+|+++..+.+|.+..+
T Consensus 177 t~~LD~~~~~~l~~-~l~~~~~-~~t-vii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 177 ASALDPIATQKIEE-LIHELKA-RYT-IIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred cccCCHHHHHHHHH-HHHHHhc-CCe-EEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 99999987777754 5555654 676 99999998766 68999999999998654
No 200
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.74 E-value=8.3e-18 Score=181.53 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=105.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh-------ccc---------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------KSG---------------------LHILSSE 492 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-------q~G---------------------~~vpa~~ 492 (844)
++.++.+++|. ..|++++|+||||||||||||+|+++.... ..| .++|...
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 45789999999 889999999999999999999997654321 012 1122210
Q ss_pred c--cccchhHHH-------------------------hhhCCchhhHhhhhhhhhHHhhH-HHHHHHhC---------CC
Q 003142 493 Y--AKVPWFDSV-------------------------FADIGDEQSLSQSLSTFSGHLKQ-IGNIISQS---------TS 535 (844)
Q Consensus 493 ~--~~i~~~~~i-------------------------~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a---------~~ 535 (844)
. ....+.+.+ +..++.........+++|+++++ +..+.+++ .+
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~ 172 (272)
T PRK13547 93 QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQP 172 (272)
T ss_pred CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCC
Confidence 0 011111221 11222222233344567776655 55555666 49
Q ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 536 QSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 536 p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|++|||||||+|||+.....+.. ++..+.+. |.+ +|++||+.+.. .+|+++..+.+|.+...
T Consensus 173 p~lllLDEPt~~LD~~~~~~l~~-~l~~~~~~~~~t-viiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 173 PRYLLLDEPTAALDLAHQHRLLD-TVRRLARDWNLG-VLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred CCEEEEcCccccCCHHHHHHHHH-HHHHHHHhcCCE-EEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999999999999988888765 44555544 787 99999998776 58999999999998754
No 201
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.74 E-value=6.4e-18 Score=165.47 Aligned_cols=128 Identities=19% Similarity=0.187 Sum_probs=90.2
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhH
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSG 521 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~ 521 (844)
..+..+++|. ..|++++|+||||+|||||+++|+++... ..|...-. ....+.+..+ +|+
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~-~~~~i~~~~~-----------------lS~ 73 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWG-STVKIGYFEQ-----------------LSG 73 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEEC-CeEEEEEEcc-----------------CCH
Confidence 4688999999 89999999999999999999999543221 12211110 1111222111 666
Q ss_pred Hh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeee
Q 003142 522 HL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENA 594 (844)
Q Consensus 522 ~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng 594 (844)
++ +++..+.+++.+|+++|||||++|+|+.....+.. ++..+ +.+ +|++||+.+.. .+|+++..+.+|
T Consensus 74 G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~-~l~~~---~~t-il~~th~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 74 GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE-ALKEY---PGT-VILVSHDRYFLDQVATKIIELEDG 143 (144)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHc---CCE-EEEEECCHHHHHHhCCEEEEEeCC
Confidence 54 56677778899999999999999999977766654 44433 466 99999998776 578888777655
No 202
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=8.2e-18 Score=179.32 Aligned_cols=154 Identities=17% Similarity=0.198 Sum_probs=114.9
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc------------------------ccccccccccc---
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------------SGLHILSSEYA--- 494 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q------------------------~G~~vpa~~~~--- 494 (844)
..+.++++|. +.|++++|+|++|+|||||+|+|.++..... .|+ +++ ++.
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGM-IFQ-hFnLLs 96 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGM-IFQ-HFNLLS 96 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccE-Eec-cccccc
Confidence 4578899999 9999999999999999999999965432211 111 111 000
Q ss_pred ccch---------------------hHHHhhhCCchhhHhhhhhhhhHHhhHH-HHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 495 KVPW---------------------FDSVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 495 ~i~~---------------------~~~i~~~ig~~q~i~~~lstfS~~~~rl-~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
...+ ...++..+|..+....+.+.+||++++. ..+.+++.+|++||.|||||+|||..
T Consensus 97 srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~T 176 (339)
T COG1135 97 SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176 (339)
T ss_pred cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHH
Confidence 0001 1234556777888888889999877655 44557799999999999999999999
Q ss_pred HHHHHHHHHHHH-HhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 553 GTALGMSLLEAF-AESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 553 ~~al~~~Ile~L-~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
...+.. ++..+ .+.|.| |+++||.++.. .+|+++..+.+|.+...+
T Consensus 177 T~sIL~-LL~~In~~lglT-IvlITHEm~Vvk~ic~rVavm~~G~lvE~G 224 (339)
T COG1135 177 TQSILE-LLKDINRELGLT-IVLITHEMEVVKRICDRVAVLDQGRLVEEG 224 (339)
T ss_pred HHHHHH-HHHHHHHHcCCE-EEEEechHHHHHHHhhhheEeeCCEEEEec
Confidence 988875 44455 455887 99999999887 599999999999997544
No 203
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=7.9e-18 Score=188.07 Aligned_cols=148 Identities=18% Similarity=0.111 Sum_probs=103.8
Q ss_pred EEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc-------------------------ccccccccc---cch
Q 003142 448 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEYAK---VPW 498 (844)
Q Consensus 448 disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~-------------------------~vpa~~~~~---i~~ 498 (844)
+++|+ ..|++++|+||||||||||||+|+++... ..|. +++. .... ..+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p-~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q-~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP-QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQ-DARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccccccccchhhCCEEEEcC-CcccCCCCcH
Confidence 77887 78899999999999999999999765321 1111 1111 0000 111
Q ss_pred h---------------HHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHH
Q 003142 499 F---------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 562 (844)
Q Consensus 499 ~---------------~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile 562 (844)
. ..++..++..+........+|+++ +++..+.+++.+|+++||||||+|||+.....+... +.
T Consensus 94 ~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~-L~ 172 (352)
T PRK11144 94 RGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY-LE 172 (352)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH-HH
Confidence 1 123344455555556667788766 556666778999999999999999999887777654 44
Q ss_pred HHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 563 AFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 563 ~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.+.+ .|.| +|++|||.+.. .+|+++..+.+|.+...
T Consensus 173 ~l~~~~g~t-ii~vTHd~~~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 173 RLAREINIP-ILYVSHSLDEILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred HHHHhcCCe-EEEEecCHHHHHHhCCEEEEEeCCEEEEe
Confidence 5554 4787 99999998755 68999999999988643
No 204
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.74 E-value=7.1e-18 Score=173.85 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=99.7
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------cccccccc-cccchhHHHh----------
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEY-AKVPWFDSVF---------- 503 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------~~vpa~~~-~~i~~~~~i~---------- 503 (844)
.++.+++|. .+|++++|+|||||||||||++|+++... ..| .++|.... ......+++.
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~ 97 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK-LSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERY 97 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC-CCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHH
Confidence 689999999 89999999999999999999999765322 222 22332110 0011111111
Q ss_pred ----hhCCchhhHh-----------hhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 003142 504 ----ADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567 (844)
Q Consensus 504 ----~~ig~~q~i~-----------~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~ 567 (844)
..++....+. .....+|+++ +++..+.+++.+|+++||||||+|+|+.....+...++..+...
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~ 177 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN 177 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC
Confidence 1112221111 1234577655 55666677899999999999999999977777765566555555
Q ss_pred CCeEEEEEccchhHHhhhccccceeee
Q 003142 568 GSLLTIATTHHGELKTLKYSNDFFENA 594 (844)
Q Consensus 568 g~t~vIitTHd~el~~~a~~~~~v~ng 594 (844)
|.| ||++||+.+....|+++..+.+|
T Consensus 178 ~~t-vi~~sh~~~~~~~~d~i~~l~~G 203 (204)
T cd03250 178 NKT-RILVTHQLQLLPHADQIVVLDNG 203 (204)
T ss_pred CCE-EEEEeCCHHHHhhCCEEEEEeCC
Confidence 776 99999998887668777666654
No 205
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.6e-17 Score=184.17 Aligned_cols=155 Identities=9% Similarity=0.058 Sum_probs=107.0
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh---hccc-------------------------cccccccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM---AKSG-------------------------LHILSSEY 493 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~---~q~G-------------------------~~vpa~~~ 493 (844)
..++++++|+ ..|++++|+||||||||||+|+|.++.-. ...| .++++...
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 4689999999 89999999999999999999999765321 0111 12222111
Q ss_pred c----ccchhH---------------------------HHhhhCCchh---hHhhhhhhhhHHhh-HHHHHHHhCCCCcE
Q 003142 494 A----KVPWFD---------------------------SVFADIGDEQ---SLSQSLSTFSGHLK-QIGNIISQSTSQSL 538 (844)
Q Consensus 494 ~----~i~~~~---------------------------~i~~~ig~~q---~i~~~lstfS~~~~-rl~~il~~a~~p~L 538 (844)
. ...+.+ .++..+|+.+ ........+|++|+ |+..+.+++.+|+|
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l 179 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL 179 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCE
Confidence 0 000111 1122233321 12334456888765 55666678999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 539 VLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 539 LLLDEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|||||||+|||+.....+.. ++..+.+ .|.| +|++|||.++. .+|+++..+.+|.+...
T Consensus 180 lilDEPts~LD~~~~~~i~~-lL~~l~~~~g~t-ii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 180 LIADEPTNAMEPTTQAQIFR-LLTRLNQNNNTT-ILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred EEEeCCCCcCCHHHHHHHHH-HHHHHHHhcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999988777764 5555665 4887 99999998887 68999999999988643
No 206
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.74 E-value=1.1e-17 Score=177.38 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=102.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH-Hhhccccc----------------------cccccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGLH----------------------ILSSEYAKVP 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~-~~~q~G~~----------------------vpa~~~~~i~ 497 (844)
++.+++++++. .+|++++|+||||||||||||+|+++. +.+..|.. ++. ....++
T Consensus 13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q-~~~~~~ 91 (248)
T PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQ-YPVEIP 91 (248)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEec-Cchhcc
Confidence 45689999999 889999999999999999999998763 22222311 111 000000
Q ss_pred h-----hH-HHh-------------------------hhCCchh-hHhhhh-hhhhHHh-hHHHHHHHhCCCCcEEEEec
Q 003142 498 W-----FD-SVF-------------------------ADIGDEQ-SLSQSL-STFSGHL-KQIGNIISQSTSQSLVLLDE 543 (844)
Q Consensus 498 ~-----~~-~i~-------------------------~~ig~~q-~i~~~l-stfS~~~-~rl~~il~~a~~p~LLLLDE 543 (844)
. +. .++ ..++..+ ...... ..+|+++ +++..+.+++.+|++|||||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDE 171 (248)
T PRK09580 92 GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE 171 (248)
T ss_pred chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0 00 000 0001100 001111 2577765 55666667899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhh--hccccceeeeEEEEe
Q 003142 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL--KYSNDFFENACMEFD 599 (844)
Q Consensus 544 P~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~--a~~~~~v~ng~v~fd 599 (844)
||+|||+.....+. .++..+.+.++| ||++||+.++... ++++..+.+|++...
T Consensus 172 Pt~~LD~~~~~~l~-~~l~~l~~~~~t-iii~sH~~~~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 172 SDSGLDIDALKIVA-DGVNSLRDGKRS-FIIVTHYQRILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred CCccCCHHHHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHhhhCCEEEEEECCeEEEe
Confidence 99999997777765 455667777787 9999999888764 677778888888653
No 207
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=8.5e-18 Score=173.49 Aligned_cols=141 Identities=19% Similarity=0.156 Sum_probs=96.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc--------------------ccccccc--cccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------------------HILSSEY--AKVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~--------------------~vpa~~~--~~i~~ 498 (844)
++.+..+++|+ .+|++++|+||||||||||+++|++.... ..|. +++.... .....
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP-DAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91 (204)
T ss_pred CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcH
Confidence 45689999999 89999999999999999999999764221 1110 1111000 00011
Q ss_pred h------------------HHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHH
Q 003142 499 F------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMS 559 (844)
Q Consensus 499 ~------------------~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~ 559 (844)
. ..++..+|.........+.+|+++ +++..+.+++.+|+++||||||+|+|+.....+. .
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~ 170 (204)
T PRK13538 92 LENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLE-A 170 (204)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-H
Confidence 1 122334455444555667788765 5566666789999999999999999998877775 4
Q ss_pred HHHHHHhcCCeEEEEEccchhHHhhh
Q 003142 560 LLEAFAESGSLLTIATTHHGELKTLK 585 (844)
Q Consensus 560 Ile~L~~~g~t~vIitTHd~el~~~a 585 (844)
++..+.+.|.| +|++||+.++..-+
T Consensus 171 ~l~~~~~~~~t-iii~sh~~~~i~~~ 195 (204)
T PRK13538 171 LLAQHAEQGGM-VILTTHQDLPVASD 195 (204)
T ss_pred HHHHHHHCCCE-EEEEecChhhhccC
Confidence 55566666787 99999998877433
No 208
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.74 E-value=3.5e-18 Score=173.16 Aligned_cols=133 Identities=16% Similarity=0.186 Sum_probs=89.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFS 520 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS 520 (844)
++.+..++ +. .+|++++|+||||||||||||+|+++... ..|..... ...+.+..+ .. .+|
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~--g~~i~~~~q---------~~-----~LS 73 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWD--GITPVYKPQ---------YI-----DLS 73 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEEC--CEEEEEEcc---------cC-----CCC
Confidence 44555553 55 77899999999999999999999654322 12221111 111222111 00 167
Q ss_pred HHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEccchhHHh-hhccccceeee
Q 003142 521 GHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG-SLLTIATTHHGELKT-LKYSNDFFENA 594 (844)
Q Consensus 521 ~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g-~t~vIitTHd~el~~-~a~~~~~v~ng 594 (844)
+++ +++..+.+++.+|+++||||||+|+|+.....+...+ ..+.+.+ .+ +|++||+.++.. +|+++..+.++
T Consensus 74 gGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l-~~~~~~~~~t-iiivsH~~~~~~~~~d~i~~l~~~ 148 (177)
T cd03222 74 GGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAI-RRLSEEGKKT-ALVVEHDLAVLDYLSDRIHVFEGE 148 (177)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH-HHHHHcCCCE-EEEEECCHHHHHHhCCEEEEEcCC
Confidence 655 5566666789999999999999999998888776544 4455554 76 999999988764 78777665433
No 209
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.5e-17 Score=179.88 Aligned_cols=154 Identities=12% Similarity=0.072 Sum_probs=106.6
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------cccccccc---cccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEY---AKVP 497 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~---~~i~ 497 (844)
..++.+++|+ .+|++++|+||||+||||||++|+++... ..| .+++.... ....
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-FEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGAT 98 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCC
Confidence 3589999999 88999999999999999999999755321 111 12222110 0111
Q ss_pred hhHHH---------------------hhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHH
Q 003142 498 WFDSV---------------------FADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTA 555 (844)
Q Consensus 498 ~~~~i---------------------~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a 555 (844)
+.+.+ +..++...........+|++++ ++..+.+++.+|++|||||||+|||+.....
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~ 178 (277)
T PRK13642 99 VEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQE 178 (277)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 11111 1222333333334456777665 4556667799999999999999999988888
Q ss_pred HHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 556 LGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 556 l~~~Ile~L~~~-g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
+.. ++..+.+. |.| +|++||+.+....|+++..+.+|.+..+
T Consensus 179 l~~-~l~~l~~~~g~t-iil~sH~~~~~~~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 179 IMR-VIHEIKEKYQLT-VLSITHDLDEAASSDRILVMKAGEIIKE 221 (277)
T ss_pred HHH-HHHHHHHhcCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 765 55566654 887 9999999988878999999999988643
No 210
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.8e-17 Score=178.26 Aligned_cols=155 Identities=17% Similarity=0.245 Sum_probs=104.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH-h---hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-M---AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~-~---~q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++.. . +..|. +++. ..
T Consensus 33 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q-~~ 111 (268)
T PRK14248 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQ-KP 111 (268)
T ss_pred CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEec-CC
Confidence 46789999999 8899999999999999999999987531 1 12221 1111 00
Q ss_pred ccc--chhHHHh----------------------hhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 494 AKV--PWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 494 ~~i--~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
..+ ...+.+. ..++.. .........+|+++ +++..+.+++.+|+++|||||
T Consensus 112 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEP 191 (268)
T PRK14248 112 NPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEP 191 (268)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 000 1111111 111110 11223345577765 556666678899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
|+|||+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+.+|++..+.
T Consensus 192 t~~LD~~~~~~l~-~~l~~~~~-~~t-iii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 192 ASALDPISNAKIE-ELITELKE-EYS-IIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred CcccCHHHHHHHH-HHHHHHhc-CCE-EEEEEeCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999998777775 45555654 566 99999998755 689999999999987543
No 211
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.74 E-value=8.5e-18 Score=177.22 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=102.4
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------ccccccc-cccchh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEY-AKVPWF 499 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~~~-~~i~~~ 499 (844)
..+..+++|+ ..|++++|+|||||||||||++|+++... ..|. +++.... ....+.
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP-TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIA 94 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC-CCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHH
Confidence 4688999999 88999999999999999999999765321 1121 1121000 000111
Q ss_pred HHHhh---------------hCCchhh-----------HhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 500 DSVFA---------------DIGDEQS-----------LSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 500 ~~i~~---------------~ig~~q~-----------i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
+.+.. ..+..+. .......+|++++ ++..+.+++.+|+++||||||+|||+..
T Consensus 95 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~ 174 (238)
T cd03249 95 ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174 (238)
T ss_pred HHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11100 0011111 1112345677654 4556667889999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
...+.. ++..+. .|.+ +|++||+.++..+|+++..+.+|.+..+
T Consensus 175 ~~~l~~-~l~~~~-~g~~-vi~~sh~~~~~~~~d~v~~l~~G~i~~~ 218 (238)
T cd03249 175 EKLVQE-ALDRAM-KGRT-TIVIAHRLSTIRNADLIAVLQNGQVVEQ 218 (238)
T ss_pred HHHHHH-HHHHhc-CCCE-EEEEeCCHHHHhhCCEEEEEECCEEEEe
Confidence 777654 555555 6776 9999999888889999999999998654
No 212
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.74 E-value=1.4e-17 Score=184.55 Aligned_cols=154 Identities=14% Similarity=0.067 Sum_probs=107.1
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------cccccccc----
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY---- 493 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~---- 493 (844)
..+.++++|+ ..|++++|+||||||||||+|+|+++... ..| .++++...
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 4689999999 88999999999999999999999654311 111 12222110
Q ss_pred cccchhHH-----------------------HhhhCCch-hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCC
Q 003142 494 AKVPWFDS-----------------------VFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGT 548 (844)
Q Consensus 494 ~~i~~~~~-----------------------i~~~ig~~-q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGl 548 (844)
....+.++ ++..++.. +........+|++|+ ++..+.+++.+|+|||+||||+||
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L 192 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 01111121 12223332 223445567788765 556666789999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 549 NPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 549 Dp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|+.....+.. ++..+.+ .|.+ +|++|||+.+. .+|+++..+.+|.+...
T Consensus 193 D~~~~~~i~~-lL~~l~~~~~~t-il~iTHdl~~~~~~~dri~vl~~G~ive~ 243 (331)
T PRK15079 193 DVSIQAQVVN-LLQQLQREMGLS-LIFIAHDLAVVKHISDRVLVMYLGHAVEL 243 (331)
T ss_pred CHHHHHHHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9988777765 5555655 4887 99999999887 58999999989988643
No 213
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.1e-17 Score=175.73 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=103.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH--Hhh--cccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV--MMA--KSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~--~~~--q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|. ..|++++|+||||||||||||+|+++. ... ..|. ++|....
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 35688999999 889999999999999999999997652 111 1221 1121000
Q ss_pred c-ccchhHHH----------------------hhhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 A-KVPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 ~-~i~~~~~i----------------------~~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
. ...+.+.+ +..++.. .........+|+++ +++..+.+++.+|+++||||||
T Consensus 95 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 174 (250)
T PRK14245 95 PFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 00111111 1112211 11222334567655 5566666789999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+|||+.....+.. ++..+. .+.+ ||++||+.+.. .+|+++..+.+|++...
T Consensus 175 ~~LD~~~~~~l~~-~l~~~~-~~~t-iiivtH~~~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 175 SALDPISTAKVEE-LIHELK-KDYT-IVIVTHNMQQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred ccCCHHHHHHHHH-HHHHHh-cCCe-EEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999977777754 555554 4676 99999998765 78999999999998654
No 214
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.3e-17 Score=177.10 Aligned_cols=155 Identities=14% Similarity=0.168 Sum_probs=105.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc---------------------ccccccc--
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL---------------------HILSSEY-- 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~---------------------~vpa~~~-- 493 (844)
+..++.+++|+ .+|++++|+|||||||||||++|+++... +..|. ++|....
T Consensus 15 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 45689999999 88999999999999999999999876431 11221 1221100
Q ss_pred cccchhHHH-----------------------hhhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 AKVPWFDSV-----------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 ~~i~~~~~i-----------------------~~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
....+.+.+ +..++.. .........+|+++ +++..+.+++.+|+++||||||
T Consensus 95 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~ 174 (250)
T PRK14247 95 PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174 (250)
T ss_pred CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 011111221 1112221 11233445677765 5566666788999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+|+|+.....+.. ++..+.. +.+ +|++||+.+.. .+|+++..+.+|.+..+
T Consensus 175 ~~LD~~~~~~l~~-~l~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14247 175 ANLDPENTAKIES-LFLELKK-DMT-IVLVTHFPQQAARISDYVAFLYKGQIVEW 226 (250)
T ss_pred ccCCHHHHHHHHH-HHHHHhc-CCE-EEEEeCCHHHHHHhcCEEEEEECCeEEEE
Confidence 9999987777764 4555554 776 99999998876 68999999999998654
No 215
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.74 E-value=1.3e-17 Score=179.53 Aligned_cols=156 Identities=12% Similarity=0.136 Sum_probs=106.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------ccccccccc--
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEYA-- 494 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~~-- 494 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .+++.....
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-SQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 35789999999 88999999999999999999999765321 111 112221000
Q ss_pred --ccchh----------------------HHHhhhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCC
Q 003142 495 --KVPWF----------------------DSVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGT 548 (844)
Q Consensus 495 --~i~~~----------------------~~i~~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGl 548 (844)
..... ..++..++.. .........+|+++ +++..+.+++.+|++|||||||+||
T Consensus 103 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~L 182 (268)
T PRK10419 103 NPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNL 182 (268)
T ss_pred CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 00111 1122223332 23344455677655 5566677889999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 549 NPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 549 Dp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
|+.....+.. +++.+.+ .+.| +|++||+.++. .+|+++..+.+|.+..+.
T Consensus 183 D~~~~~~~~~-~l~~~~~~~~~t-iiivsH~~~~i~~~~d~i~~l~~G~i~~~g 234 (268)
T PRK10419 183 DLVLQAGVIR-LLKKLQQQFGTA-CLFITHDLRLVERFCQRVMVMDNGQIVETQ 234 (268)
T ss_pred CHHHHHHHHH-HHHHHHHHcCcE-EEEEECCHHHHHHhCCEEEEEECCEEeeeC
Confidence 9977776654 5555554 4776 99999998877 589999999999987543
No 216
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=1e-17 Score=174.17 Aligned_cols=147 Identities=19% Similarity=0.149 Sum_probs=98.4
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------cccccccc--cccchhH
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------LHILSSEY--AKVPWFD 500 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------~~vpa~~~--~~i~~~~ 500 (844)
++.++++++|+ ..|++++|+||||||||||||+|+++... ..| .+++.... ..+...+
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e 101 (214)
T PRK13543 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV-ESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLE 101 (214)
T ss_pred CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CCeeEEECCEEccchhhhhceEEeecCcccccCCcHHH
Confidence 45689999999 88999999999999999999999765321 111 12221100 0011111
Q ss_pred H------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHH
Q 003142 501 S------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 561 (844)
Q Consensus 501 ~------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Il 561 (844)
. ++..++...........+|+++ +++..+.+++.+|+++||||||+|+|+.....+. .++
T Consensus 102 ~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l 180 (214)
T PRK13543 102 NLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVN-RMI 180 (214)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 1 1222333333344445677755 5566666789999999999999999997777664 566
Q ss_pred HHHHhcCCeEEEEEccchhHH-hhhccccce
Q 003142 562 EAFAESGSLLTIATTHHGELK-TLKYSNDFF 591 (844)
Q Consensus 562 e~L~~~g~t~vIitTHd~el~-~~a~~~~~v 591 (844)
..+.+.|.+ +|++||+.+.. .+|+++..+
T Consensus 181 ~~~~~~~~t-iii~sH~~~~~~~~~~~i~~l 210 (214)
T PRK13543 181 SAHLRGGGA-ALVTTHGAYAAPPVRTRMLTL 210 (214)
T ss_pred HHHHhCCCE-EEEEecChhhhhhhcceEEEE
Confidence 666667887 99999998766 577766544
No 217
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.74 E-value=1e-17 Score=174.35 Aligned_cols=150 Identities=12% Similarity=0.053 Sum_probs=100.2
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc-------------------------ccccccc-cc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------------HILSSEY-AK 495 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~-------------------------~vpa~~~-~~ 495 (844)
..++.+++|. .+|++++|+|||||||||||++|+++... ..|. +++.... ..
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLN 92 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEECCcccccccccccchhhcceEEEEcCCCcccc
Confidence 5689999999 88999999999999999999999765321 1121 1121000 00
Q ss_pred cchhHHH--------------hhhCCchhhH-----------hhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCC
Q 003142 496 VPWFDSV--------------FADIGDEQSL-----------SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 496 i~~~~~i--------------~~~ig~~q~i-----------~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlD 549 (844)
....+.+ ...++....+ ......+|+++ +++..+.+++.+|++|||||||+|||
T Consensus 93 ~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 172 (218)
T cd03290 93 ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172 (218)
T ss_pred ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccC
Confidence 0111111 1111111111 12234677765 55666667899999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHhcCCeEEEEEccchhHHhhhccccceeee
Q 003142 550 PLEGTALGMS-LLEAFAESGSLLTIATTHHGELKTLKYSNDFFENA 594 (844)
Q Consensus 550 p~~~~al~~~-Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng 594 (844)
+.....+... +++.+.+.|.| +|++||+.+...+|+++..+.+|
T Consensus 173 ~~~~~~l~~~~ll~~~~~~~~t-ii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 173 IHLSDHLMQEGILKFLQDDKRT-LVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred HHHHHHHHHHHHHHHHhcCCCE-EEEEeCChHHHhhCCEEEEecCC
Confidence 9888877653 67777777887 99999998887778777666555
No 218
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.74 E-value=8.5e-18 Score=175.14 Aligned_cols=152 Identities=13% Similarity=0.072 Sum_probs=103.7
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccccc--ch
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--PW 498 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i--~~ 498 (844)
+.++++++|. ..|++++|+|||||||||||++|+++... ..| .++|.. ...+ .+
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~-~~l~~~tv 94 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL-SSGSILIDGVDISKIGLHDLRSRISIIPQD-PVLFSGTI 94 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEhHhCCHHHHhhhEEEECCC-CccccchH
Confidence 4689999999 88999999999999999999999765321 111 112221 0000 01
Q ss_pred hH--------------HHhhhCCchhhHh-----------hhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 499 FD--------------SVFADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 499 ~~--------------~i~~~ig~~q~i~-----------~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
.+ ..+..++..+.+. .....+|+++ +++..+.+++.+|+++||||||+|||+..
T Consensus 95 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~ 174 (221)
T cd03244 95 RSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174 (221)
T ss_pred HHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11 1112233333221 2445677655 55666677899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
...+.. ++..+.. +.+ +|++||+.+....|+++..+.+|.+...
T Consensus 175 ~~~l~~-~l~~~~~-~~t-ii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 175 DALIQK-TIREAFK-DCT-VLTIAHRLDTIIDSDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHH-HHHHhcC-CCE-EEEEeCCHHHHhhCCEEEEEECCeEEec
Confidence 777654 5555543 566 9999999988877888888888887643
No 219
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.3e-17 Score=169.35 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=106.1
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH--------------------hhccccccccccccccch-
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--------------------MAKSGLHILSSEYAKVPW- 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~--------------------~~q~G~~vpa~~~~~i~~- 498 (844)
.++.+.++++|+ .+|++++|+||||+|||||||.+++-.. +++.-...|......++|
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 567899999999 9999999999999999999999953211 011000111111111111
Q ss_pred ------------------------hHHHhhhCCchhhHhhhhhhhhHHh-hHHHH--HHHhC----CCCcEEEEecCCCC
Q 003142 499 ------------------------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGN--IISQS----TSQSLVLLDEIGAG 547 (844)
Q Consensus 499 ------------------------~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~--il~~a----~~p~LLLLDEP~sG 547 (844)
..+.+...+..........++||+. +|+.. .++.. ..+.+|+|||||+.
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa 171 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence 1222333333333334445667654 44333 33333 34459999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 548 lDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
||+....... .+.+.+...|+. |+++-||.+++ .|||++..+.+|++.-.+
T Consensus 172 LDi~HQ~~tl-~laR~la~~g~~-V~~VLHDLNLAA~YaDrivll~~Grv~a~g 223 (259)
T COG4559 172 LDIAHQHHTL-RLARQLAREGGA-VLAVLHDLNLAAQYADRIVLLHQGRVIASG 223 (259)
T ss_pred cchHHHHHHH-HHHHHHHhcCCc-EEEEEccchHHHHhhheeeeeeCCeEeecC
Confidence 9998877775 577788888886 99999999998 599999999999997643
No 220
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=1e-17 Score=173.39 Aligned_cols=146 Identities=16% Similarity=0.149 Sum_probs=97.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------cccccccc--cccchhH
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------LHILSSEY--AKVPWFD 500 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------~~vpa~~~--~~i~~~~ 500 (844)
+..++++++|. .+|++++|+||||||||||+++|+++... ..| .+++.... ......+
T Consensus 14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 92 (207)
T PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-AAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE 92 (207)
T ss_pred CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHH
Confidence 45689999999 89999999999999999999999765321 111 11211000 0011111
Q ss_pred -----------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHH
Q 003142 501 -----------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 562 (844)
Q Consensus 501 -----------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile 562 (844)
.++..++...........+|+++ +++..+.+++.+|++|||||||+|+|+.....+. .++.
T Consensus 93 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~l~ 171 (207)
T PRK13539 93 NLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA-ELIR 171 (207)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHH
Confidence 12233344333344456778765 5566667789999999999999999998888775 4555
Q ss_pred HHHhcCCeEEEEEccchhHHhhhccccce
Q 003142 563 AFAESGSLLTIATTHHGELKTLKYSNDFF 591 (844)
Q Consensus 563 ~L~~~g~t~vIitTHd~el~~~a~~~~~v 591 (844)
.+.+.|.+ +|++||+.+.... +++..+
T Consensus 172 ~~~~~~~t-iii~sH~~~~~~~-~~~~~~ 198 (207)
T PRK13539 172 AHLAQGGI-VIAATHIPLGLPG-ARELDL 198 (207)
T ss_pred HHHHCCCE-EEEEeCCchhhcc-CcEEee
Confidence 56667887 9999999887644 444333
No 221
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.2e-17 Score=174.98 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=102.3
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------cccccccccc--ch
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--PW 498 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~~~~~i--~~ 498 (844)
+.+..+++|. ..|++++|+||||||||||||+|+++... ..|. ++|. ....+ .+
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q-~~~~~~~tv 93 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-QKGQILIDGIDIRDISRKSLRSMIGVVLQ-DTFLFSGTI 93 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCCEEEECCEeHHHcCHHHHhhhEEEecC-CchhhhhHH
Confidence 4688999999 88999999999999999999999765321 1221 1121 00000 01
Q ss_pred hHHHh---------------hhCCchhhH-----------hhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 499 FDSVF---------------ADIGDEQSL-----------SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 499 ~~~i~---------------~~ig~~q~i-----------~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
.+.+. ..++....+ ......+|+++ +++..+.+++.+|++|||||||+|||+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~ 173 (229)
T cd03254 94 MENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTE 173 (229)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 11110 011111111 11224577655 5566667789999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
....+.. ++..+. .+.+ +|++||+.+....|+++..+.+|.+...
T Consensus 174 ~~~~l~~-~l~~~~-~~~t-ii~~sh~~~~~~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 174 TEKLIQE-ALEKLM-KGRT-SIIIAHRLSTIKNADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHH-HHHHhc-CCCE-EEEEecCHHHHhhCCEEEEEeCCeEEEe
Confidence 8887764 455554 4776 9999999888778998889989988653
No 222
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.3e-17 Score=175.53 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=103.2
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------ccccccccc--cch
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAK--VPW 498 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~~~~~--i~~ 498 (844)
+.++.+++|. ..|++++|+|||||||||||++|+++... ..|. +++. .... ..+
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q-~~~~~~~tv 91 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV-SSGSILIDGQDIREVTLDSLRRAIGVVPQ-DTVLFNDTI 91 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCEEEECCEEhhhCCHHHHHhhEEEECC-CChhhcchH
Confidence 5688999999 88999999999999999999999765422 1121 1111 0000 011
Q ss_pred hHHHh---------------hhCCchhhH-----------hhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 499 FDSVF---------------ADIGDEQSL-----------SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 499 ~~~i~---------------~~ig~~q~i-----------~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
.+.+. ...+..+.+ ......+|+++ +++..+.+++.+|++|||||||+|+|+.
T Consensus 92 ~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~ 171 (236)
T cd03253 92 GYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTH 171 (236)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 11110 001111111 11223577655 5566677889999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
....+.. ++..+.+ |.+ +|++||+.++...|+++..+.+|.+..+
T Consensus 172 ~~~~l~~-~l~~~~~-~~t-iii~sh~~~~~~~~d~~~~l~~g~i~~~ 216 (236)
T cd03253 172 TEREIQA-ALRDVSK-GRT-TIVIAHRLSTIVNADKIIVLKDGRIVER 216 (236)
T ss_pred HHHHHHH-HHHHhcC-CCE-EEEEcCCHHHHHhCCEEEEEECCEEEee
Confidence 7777764 5555665 776 9999999988877999999999988654
No 223
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.5e-17 Score=172.47 Aligned_cols=156 Identities=15% Similarity=0.149 Sum_probs=110.3
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-----cccc----------------ccccccccc----c
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SGLH----------------ILSSEYAKV----P 497 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-----~G~~----------------vpa~~~~~i----~ 497 (844)
.+.++|+|+ ..|++++|+||+|||||||.++|+++.-..+ .|.. ++++....+ +
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 589999999 8999999999999999999999976543221 1111 111111111 0
Q ss_pred h-------------------hHHHhhhCCchhhH-hhhhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 498 W-------------------FDSVFADIGDEQSL-SQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 498 ~-------------------~~~i~~~ig~~q~i-~~~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
+ ...++..+|+..+. ......|||+ .+|++.+.+++.+|++||||||||+||+.-.+.+
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 0 12234445544332 3445678875 5777888889999999999999999999766666
Q ss_pred HHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEecc
Q 003142 557 GMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 601 (844)
Q Consensus 557 ~~~Ile~L~-~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~~ 601 (844)
.. ++..++ +++.| +|++|||..+. .+|+++..+.||++.....
T Consensus 181 ln-lL~~l~~~~~lt-~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 181 LN-LLLELKKERGLT-YLFISHDLALVEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HH-HHHHHHHhcCce-EEEEeCcHHHHHHHhhheeeeeCCeEEEeec
Confidence 54 555554 55776 99999999888 4899999999999976543
No 224
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.5e-17 Score=183.59 Aligned_cols=155 Identities=14% Similarity=0.106 Sum_probs=108.1
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------------------
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------------------ 485 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------------------ 485 (844)
..++.+++|. ..|++++|+||||||||||+|+|+++.... .|
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~-~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK-YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR 117 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCeEEECCEEcccccccccccccccccccchHHHHHhc
Confidence 4689999999 899999999999999999999997653211 11
Q ss_pred -cccccccc-cc--cchhHH---------------------HhhhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcE
Q 003142 486 -LHILSSEY-AK--VPWFDS---------------------VFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSL 538 (844)
Q Consensus 486 -~~vpa~~~-~~--i~~~~~---------------------i~~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~L 538 (844)
.+++.... .. ..+.+. ++..++.. .........+|+++ +++..+.+++.+|++
T Consensus 118 ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~i 197 (320)
T PRK13631 118 VSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI 197 (320)
T ss_pred EEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 11221100 00 011111 12223332 22344455677755 556666778999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 539 VLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 539 LLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
|||||||+|||+.....+. .++..+..+|.| ||++||+.+.. .+|+++..+.+|.+..++
T Consensus 198 LLLDEPtsgLD~~~~~~l~-~~L~~l~~~g~T-iiivtHd~~~~~~~adri~vl~~G~i~~~g 258 (320)
T PRK13631 198 LIFDEPTAGLDPKGEHEMM-QLILDAKANNKT-VFVITHTMEHVLEVADEVIVMDKGKILKTG 258 (320)
T ss_pred EEEECCccCCCHHHHHHHH-HHHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999998877775 455566667887 99999998865 799999999999997654
No 225
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.73 E-value=1e-17 Score=178.06 Aligned_cols=157 Identities=18% Similarity=0.162 Sum_probs=105.2
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH-Hhhcccc----------------------ccccccc--cc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSGL----------------------HILSSEY--AK 495 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~-~~~q~G~----------------------~vpa~~~--~~ 495 (844)
++.++.+++|+ .+|++++|+|||||||||||++|+++. +.+..|. +++.... ..
T Consensus 19 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 98 (252)
T CHL00131 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPG 98 (252)
T ss_pred CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccc
Confidence 45689999999 889999999999999999999998752 1222221 1111000 00
Q ss_pred cchhH----------------------------HHhhhCCchh-hHhhhhh-hhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 496 VPWFD----------------------------SVFADIGDEQ-SLSQSLS-TFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 496 i~~~~----------------------------~i~~~ig~~q-~i~~~ls-tfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
....+ .++..++..+ .....+. .+|+++ +++..+.+++.+|+++|||||
T Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 178 (252)
T CHL00131 99 VSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDET 178 (252)
T ss_pred ccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 00000 1112222221 1223333 478765 556666778999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-h-hccccceeeeEEEEec
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-L-KYSNDFFENACMEFDE 600 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~-~-a~~~~~v~ng~v~fd~ 600 (844)
|+|||+.....+. .++..+.+.|.| ||++||+.++.. + |+++..+.+|.+..++
T Consensus 179 t~~LD~~~~~~l~-~~l~~~~~~g~t-ii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 179 DSGLDIDALKIIA-EGINKLMTSENS-IILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred cccCCHHHHHHHH-HHHHHHHhCCCE-EEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 9999998877776 455556666887 999999988875 4 7888888889887654
No 226
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.4e-17 Score=179.16 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=104.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH--h--hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~--~--~q~G~-----------------------~vpa~~~ 493 (844)
+..++.+++|. .+|++++|+|||||||||||++|+++.. . +..|. +++.. .
T Consensus 51 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~-~ 129 (286)
T PRK14275 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK-P 129 (286)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCC-C
Confidence 45689999999 8899999999999999999999987531 1 12221 11110 0
Q ss_pred ccc--chhHHH----------------------hhhCCc----hhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 494 AKV--PWFDSV----------------------FADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 494 ~~i--~~~~~i----------------------~~~ig~----~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
..+ .+.+.+ +..++. .+........+|+++ +++..+.+++.+|++||||||
T Consensus 130 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEP 209 (286)
T PRK14275 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEP 209 (286)
T ss_pred CCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 000 111111 111111 112233445677755 556666778999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
|+|||+.....+.. ++..+.. +.+ ||++||+.++. .+|+++..+.+|++..++
T Consensus 210 t~gLD~~~~~~l~~-~L~~~~~-~~t-vIivsH~~~~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 210 TSALDPKATAKIED-LIQELRG-SYT-IMIVTHNMQQASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred CccCCHHHHHHHHH-HHHHHhc-CCe-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999977777654 5555554 566 99999998876 689999999999987543
No 227
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.4e-17 Score=178.28 Aligned_cols=156 Identities=16% Similarity=0.184 Sum_probs=104.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH--h--hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~--~--~q~G~-----------------------~vpa~~~ 493 (844)
+..++.+++|+ .+|++++|+||||||||||||+|+++.. . +..|. ++|....
T Consensus 25 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 45689999999 8999999999999999999999987642 1 12221 1121000
Q ss_pred c-ccchhHHH----------------------hhhCCc----hhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 A-KVPWFDSV----------------------FADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 ~-~i~~~~~i----------------------~~~ig~----~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
. .....+.+ +..++. ...+.....++|+++ +++..+.+++.+|++|||||||
T Consensus 105 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt 184 (260)
T PRK10744 105 PFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPC 184 (260)
T ss_pred cCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 0 00111111 111111 111223344577655 5566667789999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+|+|+.....+. .++..+.+ +.| +|++||+.+.. .+|+++..+.+|++..+.
T Consensus 185 ~~LD~~~~~~l~-~~L~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~g 237 (260)
T PRK10744 185 SALDPISTGRIE-ELITELKQ-DYT-VVIVTHNMQQAARCSDYTAFMYLGELIEFG 237 (260)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCe-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999997777765 45555554 666 99999998766 689999999999987543
No 228
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.9e-17 Score=183.22 Aligned_cols=154 Identities=12% Similarity=0.091 Sum_probs=107.4
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------ccccccccc---
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEYA--- 494 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~~--- 494 (844)
..+.++++|+ ..|++++|+||||||||||+++|+++... ..| .++++....
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN 106 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC
Confidence 4689999999 88999999999999999999999754311 111 122221100
Q ss_pred -ccch----------------------hHHHhhhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCC
Q 003142 495 -KVPW----------------------FDSVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 495 -~i~~----------------------~~~i~~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlD 549 (844)
.+.. ...++..+|.. .........+|++| +|+..+.+++.+|+|||+||||+|||
T Consensus 107 p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD 186 (327)
T PRK11308 107 PRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186 (327)
T ss_pred CccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence 0000 01123333442 23344556788876 45666667899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 550 PLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+.....+.. ++..+.+ .|.+ +|++|||..+. .+|+++..+.+|.+...
T Consensus 187 ~~~~~~i~~-lL~~l~~~~g~t-il~iTHdl~~~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 187 VSVQAQVLN-LMMDLQQELGLS-YVFISHDLSVVEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred HHHHHHHHH-HHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 988777765 4445554 5887 99999999888 48999999999988643
No 229
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.73 E-value=9.4e-18 Score=175.54 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=99.4
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------cccccccccc--ch
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV--PW 498 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~~~~~i--~~ 498 (844)
..++.++++. ..|++++|+||||+|||||+++|+++... ..|. +++. ....+ .+
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q-~~~l~~~tv 104 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP-QGGQVLLDGKPISQYEHKYLHSKVSLVGQ-EPVLFARSL 104 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-CCcEEEECCCchHHcCHHHHHhhEEEEec-ccHHHhhhH
Confidence 4689999999 88999999999999999999999765321 1121 1121 00000 00
Q ss_pred hHHH------------------------hhhC--CchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 499 FDSV------------------------FADI--GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 499 ~~~i------------------------~~~i--g~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
.+.+ +..+ |....+......+|+++ +++..+.+++.+|+++||||||+|+|+.
T Consensus 105 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~ 184 (226)
T cd03248 105 QDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184 (226)
T ss_pred HHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 1111 1111 22222333445677655 5566667789999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeE
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENAC 595 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~ 595 (844)
....+.. ++..+.+ +.| +|++||+.++...|+++..+.+|.
T Consensus 185 ~~~~l~~-~l~~~~~-~~t-ii~~sh~~~~~~~~d~i~~l~~g~ 225 (226)
T cd03248 185 SEQQVQQ-ALYDWPE-RRT-VLVIAHRLSTVERADQILVLDGGR 225 (226)
T ss_pred HHHHHHH-HHHHHcC-CCE-EEEEECCHHHHHhCCEEEEecCCc
Confidence 8887765 4445554 566 999999998887788887776664
No 230
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.7e-17 Score=176.92 Aligned_cols=156 Identities=15% Similarity=0.214 Sum_probs=105.9
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------cccccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSE 492 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~ 492 (844)
+++.++++++|+ .+|++++|+||||||||||||+|+++... +..|. ++|...
T Consensus 30 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 30 GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 345789999999 89999999999999999999999876532 12221 111100
Q ss_pred cc-ccchhHHH-----------------------hhhCCchh----hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEec
Q 003142 493 YA-KVPWFDSV-----------------------FADIGDEQ----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDE 543 (844)
Q Consensus 493 ~~-~i~~~~~i-----------------------~~~ig~~q----~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDE 543 (844)
.. .....+.+ +..++... ........+|+++ +++..+.+++.+|++|||||
T Consensus 110 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 189 (267)
T PRK14235 110 NPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDE 189 (267)
T ss_pred CCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 00 00111111 11122211 1122345677655 55666677899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 544 P~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
||+|||+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+.+|++...
T Consensus 190 Pt~~LD~~~~~~l~-~~L~~l~~-~~t-iiivtH~~~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 190 PCSALDPIATAKVE-ELIDELRQ-NYT-IVIVTHSMQQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred CCcCCCHHHHHHHH-HHHHHHhc-CCe-EEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence 99999997777765 45556654 666 99999998776 68999999999988654
No 231
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.73 E-value=1.6e-17 Score=176.87 Aligned_cols=145 Identities=19% Similarity=0.146 Sum_probs=98.1
Q ss_pred ceeEEEEe-c-----CceEEEEEccCCCCchhhHhhhhhHHHhhccc---------ccccccccc--ccch---------
Q 003142 445 VPIDIFIA-R-----KTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------LHILSSEYA--KVPW--------- 498 (844)
Q Consensus 445 V~~disl~-~-----~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------~~vpa~~~~--~i~~--------- 498 (844)
...+|+|. . .|++++|+||||||||||||+|+++... ..| .++|..... ....
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p-~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~ 87 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP-DEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITK 87 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCCeEEECCceEEEecccccCCCCCCHHHHHHHHhh
Confidence 45566666 2 5899999999999999999999765321 112 122321100 0111
Q ss_pred --------hHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcC
Q 003142 499 --------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESG 568 (844)
Q Consensus 499 --------~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~-~~g 568 (844)
...++..++.........+.+|+++ +++..+.+++.+|+++||||||+|||+.....+... +..+. +.+
T Consensus 88 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~ 166 (246)
T cd03237 88 DFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKV-IRRFAENNE 166 (246)
T ss_pred hccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcC
Confidence 1123344555555556667888765 556667778999999999999999999888877654 44554 457
Q ss_pred CeEEEEEccchhHHh-hhcccccee
Q 003142 569 SLLTIATTHHGELKT-LKYSNDFFE 592 (844)
Q Consensus 569 ~t~vIitTHd~el~~-~a~~~~~v~ 592 (844)
.+ ||++||+.++.. +|+++..+.
T Consensus 167 ~t-iiivsHd~~~~~~~~d~i~~l~ 190 (246)
T cd03237 167 KT-AFVVEHDIIMIDYLADRLIVFE 190 (246)
T ss_pred CE-EEEEeCCHHHHHHhCCEEEEEc
Confidence 87 999999988775 788776553
No 232
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.2e-17 Score=175.43 Aligned_cols=151 Identities=14% Similarity=0.124 Sum_probs=102.2
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------cccccccccc--cchh
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAK--VPWF 499 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~--i~~~ 499 (844)
.+..+++|+ .+|++++|+||||||||||||+|+++... ..| .+++. .... ..+.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q-~~~~~~~tv~ 93 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV-DSGRILIDGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVA 93 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC-CCCEEEECCEEhhhCCHHHHHhhEEEeCC-CCeeccccHH
Confidence 688999999 88999999999999999999999765321 112 11221 1000 0111
Q ss_pred HHHhh---------------hCCchhh-----------HhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 500 DSVFA---------------DIGDEQS-----------LSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 500 ~~i~~---------------~ig~~q~-----------i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
+.+.. ..+..+. .......+|+++ +++..+.+++.+|+++||||||+|||+..
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 173 (234)
T cd03251 94 ENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173 (234)
T ss_pred HHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 11110 0011111 112234567655 56666777899999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
...+. .++..+.+ +.+ +|++||+.++...|+++..+.+|.+..+
T Consensus 174 ~~~l~-~~l~~~~~-~~t-ii~~sh~~~~~~~~d~v~~l~~G~i~~~ 217 (234)
T cd03251 174 ERLVQ-AALERLMK-NRT-TFVIAHRLSTIENADRIVVLEDGKIVER 217 (234)
T ss_pred HHHHH-HHHHHhcC-CCE-EEEEecCHHHHhhCCEEEEecCCeEeee
Confidence 77775 45555554 776 9999999888877999999999988643
No 233
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.1e-17 Score=176.07 Aligned_cols=156 Identities=18% Similarity=0.280 Sum_probs=104.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh----cccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----q~G~-----------------------~vpa~~~ 493 (844)
+..++++++|. .+|++++|+||||||||||||+|+++.... ..|. ++|....
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (254)
T PRK14273 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN 98 (254)
T ss_pred CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc
Confidence 45689999999 889999999999999999999997664321 1121 1111000
Q ss_pred c-ccchhHHHh----------------------hhCCc----hhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 A-KVPWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 ~-~i~~~~~i~----------------------~~ig~----~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
. .....+.+. ..++. .+......+.+|+++ +++..+.+++.+|++|||||||
T Consensus 99 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt 178 (254)
T PRK14273 99 PFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPT 178 (254)
T ss_pred cccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0 011112111 01111 011222334577765 5566666788999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+|||+.....+.. ++..+.+ +.| +|++||+.++. .+|+++..+.+|++..+.
T Consensus 179 ~~LD~~~~~~l~~-~l~~~~~-~~t-vii~sH~~~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 179 SALDPISTGKIEE-LIINLKE-SYT-IIIVTHNMQQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred cccCHHHHHHHHH-HHHHHhc-CCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999988777765 5555654 676 99999998875 689999999999987543
No 234
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2.5e-17 Score=173.72 Aligned_cols=152 Identities=18% Similarity=0.183 Sum_probs=105.5
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------ccccccccc--ccchhH--
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSEYA--KVPWFD-- 500 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~~~--~i~~~~-- 500 (844)
++.+++|+ .+|++++|+||||+||||||++|+++... ..| .+++..... .....+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p-~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP-DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 78999999 88999999999999999999999765321 111 112211000 001111
Q ss_pred -------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHH
Q 003142 501 -------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560 (844)
Q Consensus 501 -------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~I 560 (844)
..+..++....+......+|+++ +++..+.+++.+|+++||||||+|+|+.....+. .+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~-~~ 171 (235)
T cd03299 93 AYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLR-EE 171 (235)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHH-HH
Confidence 11223344444444556678655 5566677889999999999999999997777665 45
Q ss_pred HHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 561 LEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 561 le~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+..+.. .|.| +|++||+.... .+|+++..+.+|++...
T Consensus 172 l~~~~~~~~~t-ili~tH~~~~~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 172 LKKIRKEFGVT-VLHVTHDFEEAWALADKVAIMLNGKLIQV 211 (235)
T ss_pred HHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 555554 4887 99999998765 68999999999998654
No 235
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.2e-17 Score=192.20 Aligned_cols=155 Identities=16% Similarity=0.123 Sum_probs=108.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------cccccccc--ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~~--~~i 496 (844)
++.++.+++|. .+|++++|+||||||||||||+|+++.... .| .++|.... ...
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD-SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 45789999999 899999999999999999999997653211 11 12222100 001
Q ss_pred chhHH------------------------HhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 497 PWFDS------------------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 497 ~~~~~------------------------i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
...+. ++..++..........++|++++ ++..+.+++.+|++|||||||+|||+.
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~ 168 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEK 168 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence 11111 12223333333445567887665 455566788999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
....+. .++..+.+.|.+ ||++||+.++. .+|+++..+.+|.+...
T Consensus 169 ~~~~l~-~~l~~l~~~g~t-vii~tH~~~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 169 EVNHLF-TIIRKLKERGCG-IVYISHKMEEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred HHHHHH-HHHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEee
Confidence 777775 456667777887 99999998766 68999999999998654
No 236
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.3e-17 Score=175.55 Aligned_cols=154 Identities=18% Similarity=0.253 Sum_probs=104.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH--h--hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~--~--~q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|. .+|++++|+||||||||||+|+|+++.. . +..|. ++|...
T Consensus 17 ~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~- 95 (251)
T PRK14244 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP- 95 (251)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCc-
Confidence 45789999999 8899999999999999999999987642 1 11221 222210
Q ss_pred ccc--chhHHH-----------------------hhhCCchh----hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEec
Q 003142 494 AKV--PWFDSV-----------------------FADIGDEQ----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDE 543 (844)
Q Consensus 494 ~~i--~~~~~i-----------------------~~~ig~~q----~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDE 543 (844)
..+ ...+.+ +..++... .+......+|+++ +++..+.+++.+|++|||||
T Consensus 96 ~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 175 (251)
T PRK14244 96 NPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDE 175 (251)
T ss_pred ccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 000 111111 12222211 1222344577655 55666667889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 544 P~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
||+|||+.....+. .++..+. .+.| +|++||+.++. .+|+++..+.+|++...
T Consensus 176 Pt~~LD~~~~~~l~-~~l~~~~-~~~t-iiiisH~~~~~~~~~d~i~~l~~G~i~~~ 229 (251)
T PRK14244 176 PCSALDPVATNVIE-NLIQELK-KNFT-IIVVTHSMKQAKKVSDRVAFFQSGRIVEY 229 (251)
T ss_pred CCccCCHHHHHHHH-HHHHHHh-cCCe-EEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 99999997777765 4555565 4776 99999998875 68999999999998754
No 237
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=2.4e-17 Score=161.70 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=114.8
Q ss_pred hccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH---------------------------hhccccccc
Q 003142 438 ALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM---------------------------MAKSGLHIL 489 (844)
Q Consensus 438 ~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~---------------------------~~q~G~~vp 489 (844)
+..++..++++++|. ..|+.++||||+|||||||||+++.+.- ..|.....+
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 334677899999999 8899999999999999999999975421 112111111
Q ss_pred c--ccccccch-----------hHHHhhhCCchhhH-hhhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHH
Q 003142 490 S--SEYAKVPW-----------FDSVFADIGDEQSL-SQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 554 (844)
Q Consensus 490 a--~~~~~i~~-----------~~~i~~~ig~~q~i-~~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~ 554 (844)
. ..+-.+++ +-.++.+++..+++ ......+|| +.++++.+..+..-|++|||||||++||+.+..
T Consensus 91 ~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr 170 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKR 170 (223)
T ss_pred cchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHH
Confidence 0 00111111 22345556655444 344556676 556677777788999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccchhH-HhhhccccceeeeEEE
Q 003142 555 ALGMSLLEAFAESGSLLTIATTHHGEL-KTLKYSNDFFENACME 597 (844)
Q Consensus 555 al~~~Ile~L~~~g~t~vIitTHd~el-~~~a~~~~~v~ng~v~ 597 (844)
.+-.-|..+.+++... ++++|||... ...+++++.+..|+..
T Consensus 171 ~ie~mi~~~v~~q~vA-v~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 171 NIEEMIHRYVREQNVA-VLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred HHHHHHHHHhhhhceE-EEEEecChHHHhhhhheEEEeccCccc
Confidence 9977777777788887 9999999877 5789999999888763
No 238
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.73 E-value=1.6e-17 Score=193.75 Aligned_cols=156 Identities=12% Similarity=0.118 Sum_probs=107.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh-hcccc----------------------ccccccc--cc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGL----------------------HILSSEY--AK 495 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~-~q~G~----------------------~vpa~~~--~~ 495 (844)
++.++++++|+ ..|++++|+||||||||||||+|+++... +..|. ++|.... ..
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 45689999999 88999999999999999999999775432 01221 1222100 00
Q ss_pred cchhHHH-------------------------hhhCCchhhH-hhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCC
Q 003142 496 VPWFDSV-------------------------FADIGDEQSL-SQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGT 548 (844)
Q Consensus 496 i~~~~~i-------------------------~~~ig~~q~i-~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGl 548 (844)
+...+.+ +..++..... .....++|+++++ +..+.+++.+|++|||||||+||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L 172 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 1111111 1222222211 2335678887654 55556788999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 549 Dp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|+.....+. .++..+.+.|.+ ||++||+.++. .+|+++..+.+|.+...
T Consensus 173 D~~~~~~l~-~~l~~l~~~g~t-viiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 173 TEKETEILL-DIIRDLKAHGVA-CVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred CHHHHHHHH-HHHHHHHhCCCE-EEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 997777775 466667777887 99999998766 68999999999988643
No 239
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2e-17 Score=175.65 Aligned_cols=155 Identities=16% Similarity=0.207 Sum_probs=104.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH--hhccc---------------------ccccccccc-cc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--MAKSG---------------------LHILSSEYA-KV 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~--~~q~G---------------------~~vpa~~~~-~i 496 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++.- .+..| .++|..... ..
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~ 93 (246)
T PRK14269 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVK 93 (246)
T ss_pred CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccc
Confidence 45789999999 8899999999999999999999987531 11122 112221000 00
Q ss_pred chhHH-----------------------HhhhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCC
Q 003142 497 PWFDS-----------------------VFADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGT 548 (844)
Q Consensus 497 ~~~~~-----------------------i~~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGl 548 (844)
...+. ++..++.. +........+|+++ +++..+.+++.+|+++||||||+|+
T Consensus 94 tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~L 173 (246)
T PRK14269 94 SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSAL 173 (246)
T ss_pred cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 11111 12222221 11223345567655 5566667789999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 549 Dp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|+.....+.. ++..+.. +.| +|++||+.+.. .+|+++..+.+|++...
T Consensus 174 D~~~~~~l~~-~l~~~~~-~~t-iii~tH~~~~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 174 DPISSGVIEE-LLKELSH-NLS-MIMVTHNMQQGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred CHHHHHHHHH-HHHHHhC-CCE-EEEEecCHHHHHhhCcEEEEEECCEEEEE
Confidence 9977777654 4555554 776 99999998765 69999999999998654
No 240
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3e-17 Score=174.69 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=104.2
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh----cccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|. .+|++++|+||||||||||||+|+++.... ..|. ++|....
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 45689999999 889999999999999999999998764321 1221 1111000
Q ss_pred --cccchhHHHh-----------------------hhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEec
Q 003142 494 --AKVPWFDSVF-----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDE 543 (844)
Q Consensus 494 --~~i~~~~~i~-----------------------~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDE 543 (844)
....+.+.+. ..++.. .........+|+++ +++..+.+++.+|+++||||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0011111111 111111 11223345567655 55666667899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 544 P~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
||+|||+.....+.. ++..+.+ +.| +|++||+.+.. .+|+++..+.+|++...
T Consensus 176 P~~~LD~~~~~~l~~-~l~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 176 PTANIDPVGTAKIEE-LLFELKK-EYT-IVLVTHSPAQAARVSDYVAFLYLGKLIEV 229 (253)
T ss_pred CCccCCHHHHHHHHH-HHHHHhh-CCE-EEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 999999977777654 5555554 576 99999998765 68999999999998754
No 241
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.3e-17 Score=174.34 Aligned_cols=156 Identities=20% Similarity=0.278 Sum_probs=104.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh-h---cccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~-~---q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|. .+|++++|+|||||||||||++|+++... + ..|. ++|....
T Consensus 24 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 103 (259)
T PRK14274 24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103 (259)
T ss_pred CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence 45789999999 88999999999999999999999876431 1 1221 1111000
Q ss_pred c-ccchhHHH----------------------hhhCCchh----hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 A-KVPWFDSV----------------------FADIGDEQ----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 ~-~i~~~~~i----------------------~~~ig~~q----~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
. .....+.+ +..++..+ .+......+|+++ +++..+.+++.+|+++||||||
T Consensus 104 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 183 (259)
T PRK14274 104 PFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPT 183 (259)
T ss_pred ccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 0 00111111 11122211 1223334567655 5566666789999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+|+|+.....+. .++..+.+ +.| +|++||+.+.. .+|+++..+.+|++..++
T Consensus 184 ~~LD~~~~~~l~-~~l~~~~~-~~t-iiivtH~~~~~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 184 SALDPVSTRKIE-ELILKLKE-KYT-IVIVTHNMQQAARVSDQTAFFYMGELVECN 236 (259)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCE-EEEEEcCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999997777775 45555654 676 99999998765 689999999999987543
No 242
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.6e-17 Score=194.14 Aligned_cols=157 Identities=14% Similarity=0.048 Sum_probs=109.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------ccccccc-----c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSE-----Y 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~-----~ 493 (844)
+..+..+++|+ ..|++++|+||||||||||||+|+++...+..| .++|... .
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 34688999999 889999999999999999999997653211111 1222210 0
Q ss_pred cccchhH--------------------------HHhhhCCch-hhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCC
Q 003142 494 AKVPWFD--------------------------SVFADIGDE-QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 ~~i~~~~--------------------------~i~~~ig~~-q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~ 545 (844)
..+...+ .++..++.. ........++|+++++ +..+.+++.+|++|||||||
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt 433 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 0011111 112223332 2234445677876654 55566778999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+|||+.....+. .++..+.++|.| ||++|||.++. .+|+++..+.+|.+.++.
T Consensus 434 ~~LD~~~~~~l~-~~l~~l~~~g~t-vi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 434 RGIDVGAKYEIY-KLINQLVQQGVA-IIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred CCcCHhHHHHHH-HHHHHHHHCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 999997777775 566667777887 99999998765 689999999999987543
No 243
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.2e-17 Score=173.42 Aligned_cols=156 Identities=14% Similarity=0.188 Sum_probs=103.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH-hh---cccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-MA---KSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~-~~---q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|+ .+|++++|+|||||||||||++|+++.. .+ ..|. ++|....
T Consensus 17 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 45689999999 8899999999999999999999976521 11 1221 1121000
Q ss_pred c-ccchhHHHh----------------------hhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 A-KVPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 ~-~i~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
. .....+.+. ..++.. .........+|+++ +++..+.+++.+|+++||||||
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 176 (252)
T PRK14239 97 PFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176 (252)
T ss_pred cCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 0 011112211 011110 11122334577655 5566666788999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+|||+.....+. .++..+.. +.| ||++||+.+.. .+|+++..+.+|.+...+
T Consensus 177 ~~LD~~~~~~l~-~~l~~~~~-~~t-ii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 177 SALDPISAGKIE-ETLLGLKD-DYT-MLLVTRSMQQASRISDRTGFFLDGDLIEYN 229 (252)
T ss_pred cccCHHHHHHHH-HHHHHHhh-CCe-EEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999998777775 45555554 566 99999998654 789999999999987543
No 244
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.72 E-value=2.9e-17 Score=181.96 Aligned_cols=155 Identities=13% Similarity=0.066 Sum_probs=106.5
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--ccc-------------------------ccccccccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--KSG-------------------------LHILSSEYA 494 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--q~G-------------------------~~vpa~~~~ 494 (844)
..+.++++|+ ..|++++|+|+||||||||+++|.++.-.. ..| .++++....
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 4689999999 889999999999999999999997654221 112 122221100
Q ss_pred ----ccchhHH----------------------HhhhCCchh---hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 495 ----KVPWFDS----------------------VFADIGDEQ---SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 495 ----~i~~~~~----------------------i~~~ig~~q---~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
.+...++ ++..++..+ .+......+|+++ +|+..+.+++.+|+|||+|||
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEP 188 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEP 188 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0111111 112222221 1233455678876 456666678999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 545 GAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|+|||+.....+.. ++..+.+ .|.+ +|++|||..+. .+|+++..+.+|.+...
T Consensus 189 ts~LD~~~~~~i~~-lL~~l~~~~g~t-il~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 189 TTALDVTVQAQIMT-LLNELKREFNTA-IIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred CccCCHHHHHHHHH-HHHHHHHHcCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999988887765 5555655 4887 99999998877 58999999999998654
No 245
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.72 E-value=2.1e-17 Score=170.03 Aligned_cols=142 Identities=16% Similarity=0.118 Sum_probs=96.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------------------cccccccc--cccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------------------~~vpa~~~--~~i~~ 498 (844)
++.++.+++|. .+|++++|+|||||||||||++|+++... ..| .++|.... .....
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 91 (200)
T PRK13540 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP-EKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTL 91 (200)
T ss_pred CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCeeEEECCCccccCHHHHHhheEEeccccccCcCCCH
Confidence 45699999999 89999999999999999999999764311 111 11221000 01111
Q ss_pred hH----------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHH
Q 003142 499 FD----------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 561 (844)
Q Consensus 499 ~~----------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Il 561 (844)
.+ .++..++...........+|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~-~l 170 (200)
T PRK13540 92 RENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIIT-KI 170 (200)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHH-HH
Confidence 11 12222333333344445677654 66777778899999999999999999977777764 55
Q ss_pred HHHHhcCCeEEEEEccchhHHhhhc
Q 003142 562 EAFAESGSLLTIATTHHGELKTLKY 586 (844)
Q Consensus 562 e~L~~~g~t~vIitTHd~el~~~a~ 586 (844)
..+.+.|.+ +|++||+.++..-+|
T Consensus 171 ~~~~~~~~t-iii~sh~~~~~~~~d 194 (200)
T PRK13540 171 QEHRAKGGA-VLLTSHQDLPLNKAD 194 (200)
T ss_pred HHHHHcCCE-EEEEeCCchhccccc
Confidence 556667887 999999988876554
No 246
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.72 E-value=1.5e-17 Score=193.57 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=106.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc----------------------cccccccc--c-
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------------HILSSEYA--K- 495 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~----------------------~vpa~~~~--~- 495 (844)
++.++++++|. ..|++++|+||||||||||||+|+++......|. +++..... .
T Consensus 272 ~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 351 (490)
T PRK10938 272 DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRV 351 (490)
T ss_pred CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhccc
Confidence 45689999999 8999999999999999999999987532101110 11110000 0
Q ss_pred -cch-------------------------hHHHhhhCCchh-hHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCC
Q 003142 496 -VPW-------------------------FDSVFADIGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAG 547 (844)
Q Consensus 496 -i~~-------------------------~~~i~~~ig~~q-~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sG 547 (844)
..+ ...++..++... ......+++|++++ ++..+.+++.+|++|||||||+|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~g 431 (490)
T PRK10938 352 STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQG 431 (490)
T ss_pred CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 000 011222334433 34445567887665 45566677999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh--hhccccceeeeEEEEec
Q 003142 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT--LKYSNDFFENACMEFDE 600 (844)
Q Consensus 548 lDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~--~a~~~~~v~ng~v~fd~ 600 (844)
||+.....+.. ++..+.+.+.++||++|||.++.. +|+++..+.+|.+....
T Consensus 432 LD~~~~~~l~~-~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 432 LDPLNRQLVRR-FVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred CCHHHHHHHHH-HHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 99988887764 555566555423999999988774 57888888899876543
No 247
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.72 E-value=1.7e-17 Score=193.45 Aligned_cols=156 Identities=15% Similarity=0.071 Sum_probs=108.2
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------cccccccc--ccc-
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV- 496 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~~--~~i- 496 (844)
..+..+++|. ..|++++|+||||||||||||+|+++...+..| .++|.... ..+
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP 352 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence 4688999999 889999999999999999999997654311111 11121100 000
Q ss_pred --ch--------------------------hHHHhhhCCchh-hHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCC
Q 003142 497 --PW--------------------------FDSVFADIGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 497 --~~--------------------------~~~i~~~ig~~q-~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~s 546 (844)
.. +..++..++... .....+.++|++++ ++..+.+++.+|++|||||||+
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 432 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 00 011222333321 23444567787665 4555667789999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
|||+.....+. .++..+.++|.+ ||++|||.++. .+|+++..+.+|.+.++.
T Consensus 433 ~LD~~~~~~l~-~~l~~l~~~g~t-viivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 433 GVDVGAKYEIY-KLINQLAQEGVA-IIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred CcCHhHHHHHH-HHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 99997777665 566777777887 99999998766 689999999999987644
No 248
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5e-17 Score=174.82 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=105.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++... ...|. ++|. ..
T Consensus 32 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q-~~ 110 (267)
T PRK14237 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQ-RP 110 (267)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEec-CC
Confidence 46789999999 89999999999999999999999876531 12221 1121 00
Q ss_pred cc--cchhHHHh----------------------hhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 494 AK--VPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 494 ~~--i~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
.. ....+.+. ..++.. ..+......+|+++ +++..+.+++.+|++||||||
T Consensus 111 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 190 (267)
T PRK14237 111 NPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEP 190 (267)
T ss_pred ccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 01111111 111111 11233345677765 556666678999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
|+|||+.....+.. ++..+.+ +.+ +|++||+.+.. .+|+++..+.+|++....
T Consensus 191 t~~LD~~~~~~l~~-~l~~~~~-~~t-iii~tH~~~~~~~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 191 ASALDPISTMQLEE-TMFELKK-NYT-IIIVTHNMQQAARASDYTAFFYLGDLIEYD 244 (267)
T ss_pred cccCCHHHHHHHHH-HHHHHhc-CCE-EEEEecCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999977777654 5555654 676 99999998765 789999999999987543
No 249
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.72 E-value=3.1e-17 Score=192.26 Aligned_cols=154 Identities=13% Similarity=0.114 Sum_probs=107.4
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------------cccccccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------------LHILSSEY 493 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------------~~vpa~~~ 493 (844)
..++.+++|. ..|++++|+||||||||||||+|+++.... .| .++|....
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT-SGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 4689999999 899999999999999999999997653110 11 12222100
Q ss_pred --cccchhHH--------------------HhhhCCchh-----hHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCC
Q 003142 494 --AKVPWFDS--------------------VFADIGDEQ-----SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 --~~i~~~~~--------------------i~~~ig~~q-----~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~ 545 (844)
......+. ++..++... .......++|++++ ++..+.+++.+|++|||||||
T Consensus 376 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt 455 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPT 455 (520)
T ss_pred cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 00111111 122334422 23455677888665 556666788999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 546 AGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+|||+.....+.. ++..+.+ .|.+ ||++|||.++. .+|+++..+.+|.+.++
T Consensus 456 ~~LD~~~~~~l~~-~l~~l~~~~g~t-vi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 509 (520)
T TIGR03269 456 GTMDPITKVDVTH-SILKAREEMEQT-FIIVSHDMDFVLDVCDRAALMRDGKIVKI 509 (520)
T ss_pred ccCCHHHHHHHHH-HHHHHHHHcCcE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999988887765 4455554 5887 99999998776 58999999999988654
No 250
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.72 E-value=1.9e-17 Score=194.51 Aligned_cols=154 Identities=15% Similarity=0.162 Sum_probs=108.3
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc------------------------cccccccc----
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG------------------------LHILSSEY---- 493 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G------------------------~~vpa~~~---- 493 (844)
+.++++++|. ..|++++|+||||||||||||+|+++.. ..| .++|....
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~ 376 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN--SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLN 376 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcC
Confidence 5689999999 8999999999999999999999976531 111 12222110
Q ss_pred cccchhH-----------------------HHhhhCCch-hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCC
Q 003142 494 AKVPWFD-----------------------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGT 548 (844)
Q Consensus 494 ~~i~~~~-----------------------~i~~~ig~~-q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGl 548 (844)
......+ .++..++.. ........++|++++ ++..+.+++.+|++|||||||+||
T Consensus 377 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 456 (529)
T PRK15134 377 PRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSL 456 (529)
T ss_pred CcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCcccc
Confidence 0011111 122333443 234455567888665 556666778999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 549 NPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 549 Dp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
|+.....+.. ++..+.+ .|.+ ||++|||.++. .+|+++..+.+|.+..+.
T Consensus 457 D~~~~~~l~~-~l~~~~~~~~~t-vi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 508 (529)
T PRK15134 457 DKTVQAQILA-LLKSLQQKHQLA-YLFISHDLHVVRALCHQVIVLRQGEVVEQG 508 (529)
T ss_pred CHHHHHHHHH-HHHHHHHhhCCE-EEEEeCCHHHHHHhcCeEEEEECCEEEEEc
Confidence 9988887765 5555655 4787 99999998766 689999999999986543
No 251
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.6e-17 Score=172.98 Aligned_cols=156 Identities=16% Similarity=0.208 Sum_probs=104.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh-h---ccc-----------------------cccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSG-----------------------LHILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~-~---q~G-----------------------~~vpa~~~ 493 (844)
++.+.++++|+ .+|++++|+||||||||||||+|+++... + ..| .+++....
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 35689999999 88999999999999999999999875321 1 112 11221100
Q ss_pred c-ccchhHHHh----------------------hhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 A-KVPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 ~-~i~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
. .....+.+. ..++.. ........++|+++ +++..+.+++.+|+++||||||
T Consensus 95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 174 (250)
T PRK14240 95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0 011111111 011110 11122334577755 5566667789999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+|+|+.....+.. ++..+.. +.| +|++||+.+.. .+|+++..+.+|.+..+.
T Consensus 175 ~~LD~~~~~~l~~-~l~~~~~-~~t-iii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 175 SALDPISTLKIEE-LIQELKK-DYT-IVIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred ccCCHHHHHHHHH-HHHHHhc-CCe-EEEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 9999988877754 5555554 676 99999998755 689999999999987543
No 252
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.72 E-value=4.1e-17 Score=168.28 Aligned_cols=150 Identities=18% Similarity=0.199 Sum_probs=109.2
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------ccc-cccccccccccch
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSG-LHILSSEYAKVPW 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~G-~~vpa~~~~~i~~ 498 (844)
|...++.+++|. ..|++++|+||||+|||||||+|.++.-.. ..| .++|.
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPe-------- 85 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPE-------- 85 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcc--------
Confidence 566799999999 899999999999999999999996543211 111 12232
Q ss_pred hHHHhhhCCchhh-------------------------------HhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCC
Q 003142 499 FDSVFADIGDEQS-------------------------------LSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 499 ~~~i~~~ig~~q~-------------------------------i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~s 546 (844)
-.++|..++++++ ..+.-.++||+.++ ++...+++.+|+|||||||+.
T Consensus 86 gR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~ 165 (237)
T COG0410 86 GRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE 165 (237)
T ss_pred cccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 1122333322222 22233456775554 555667899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 547 GTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
||-|.-...+.. ++..|++. |.| |++|.++..++ .++|+...+.+|.+.+.+
T Consensus 166 GLaP~iv~~I~~-~i~~l~~~~g~t-IlLVEQn~~~Al~iaDr~yvle~Griv~~G 219 (237)
T COG0410 166 GLAPKIVEEIFE-AIKELRKEGGMT-ILLVEQNARFALEIADRGYVLENGRIVLSG 219 (237)
T ss_pred CcCHHHHHHHHH-HHHHHHHcCCcE-EEEEeccHHHHHHhhCEEEEEeCCEEEEec
Confidence 999988888764 55667765 656 99999998887 699999999999998865
No 253
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.7e-17 Score=173.22 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=104.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH--h--hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~--~--~q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++.. . +..|. ++|....
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 45689999999 8899999999999999999999987642 1 01121 1121100
Q ss_pred --cccchhHHH----------------------hhhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 494 --AKVPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 494 --~~i~~~~~i----------------------~~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
....+.+.+ +..++.. +........+|+++ +++..+.+++.+|++||||||
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 175 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEP 175 (252)
T ss_pred CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 001111111 1111211 11122334577665 556666678899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|+|+|+.....+. .+++.+.+ +.| ||++||+.+.. .+|+++..+.+|.+..+
T Consensus 176 ~~gLD~~~~~~l~-~~l~~~~~-~~t-iiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 176 ASALDPISTLKIE-ELIEELKE-KYT-IIIVTHNMQQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred cccCCHHHHHHHH-HHHHHHHh-CCc-EEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999997777775 45566665 566 99999998776 68999999999998654
No 254
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.4e-17 Score=172.57 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=104.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|+ ..|++++|+||||||||||||+|+++... ...|. +++....
T Consensus 16 ~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 45689999999 88999999999999999999999876531 11221 1111000
Q ss_pred -cccchhHHH----------------------hhhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 -AKVPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 -~~i~~~~~i----------------------~~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
...++.+.+ +..++.. .........+|+++ +++..+.+++.+|+++|||||+
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~ 175 (251)
T PRK14251 96 PFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175 (251)
T ss_pred cCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 000111111 1111221 11233445677655 5566666789999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+|+|+.....+.. ++..+.+ +.| +|++||+.+.. .+|+++..+.+|++..+
T Consensus 176 ~~LD~~~~~~l~~-~l~~~~~-~~t-iiiisH~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 176 SALDPISSSEIEE-TLMELKH-QYT-FIMVTHNLQQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred ccCCHHHHHHHHH-HHHHHHc-CCe-EEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence 9999977777654 5555544 566 99999998765 68999999999998654
No 255
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.3e-17 Score=172.50 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=104.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~~ 493 (844)
+..++.+++|+ .+|++++|+||||+||||||++|+++.-. +..|. ++|....
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 45689999999 88999999999999999999999865321 01121 1111000
Q ss_pred -cccchhHHHh----------------------hhCCchh----hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 -AKVPWFDSVF----------------------ADIGDEQ----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 -~~i~~~~~i~----------------------~~ig~~q----~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
......+.+. ..++... ........+|+++ +++..+.+++.+|+++||||||
T Consensus 95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~ 174 (250)
T PRK14262 95 PFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPT 174 (250)
T ss_pred cCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 0011111110 1111111 1223345677655 5566667789999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhH-HhhhccccceeeeEEEEec
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL-KTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el-~~~a~~~~~v~ng~v~fd~ 600 (844)
+|||+.....+.. ++..+.+ +.| +|++||+.+. ..+|+++..+.+|.+...+
T Consensus 175 ~~LD~~~~~~l~~-~l~~~~~-~~t-ili~sH~~~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14262 175 SALDPIATQRIEK-LLEELSE-NYT-IVIVTHNIGQAIRIADYIAFMYRGELIEYG 227 (250)
T ss_pred cccCHHHHHHHHH-HHHHHhc-CcE-EEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 9999987777754 5555554 676 9999999875 5789999999999987543
No 256
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.72 E-value=3e-17 Score=169.09 Aligned_cols=144 Identities=16% Similarity=0.188 Sum_probs=96.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------------------ccccccccc--ccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEYA--KVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------------------~~vpa~~~~--~i~~ 498 (844)
++.++++++|+ ..|++++|+||||+||||||++|+++... ..| .++|..... ....
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP-LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 45688999999 88999999999999999999999765321 111 112210000 0111
Q ss_pred h---------------HHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHH
Q 003142 499 F---------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 562 (844)
Q Consensus 499 ~---------------~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile 562 (844)
. ..++..++...........+|+++ +++..+.+++.+|+++||||||+|+|+.....+.. ++.
T Consensus 91 ~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~-~l~ 169 (201)
T cd03231 91 LENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAE-AMA 169 (201)
T ss_pred HHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHH
Confidence 1 122333444444444556778765 55666667899999999999999999988777764 555
Q ss_pred HHHhcCCeEEEEEccchh-HHhhhccc
Q 003142 563 AFAESGSLLTIATTHHGE-LKTLKYSN 588 (844)
Q Consensus 563 ~L~~~g~t~vIitTHd~e-l~~~a~~~ 588 (844)
.+.+.|.+ +|++||+.. +..++++.
T Consensus 170 ~~~~~g~t-iii~sH~~~~~~~~~~~~ 195 (201)
T cd03231 170 GHCARGGM-VVLTTHQDLGLSEAGARE 195 (201)
T ss_pred HHHhCCCE-EEEEecCchhhhhcccee
Confidence 56666887 999999854 44565554
No 257
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.72 E-value=1.8e-16 Score=184.40 Aligned_cols=145 Identities=20% Similarity=0.186 Sum_probs=97.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHh-----------------
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF----------------- 503 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~----------------- 503 (844)
++++..+++|. ..|.-++|+||||+|||||||+|.+..-.. .|....+ ....++||++-.
T Consensus 334 ~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g-~~v~igyf~Q~~~~l~~~~t~~d~l~~~~ 411 (530)
T COG0488 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVG-ETVKIGYFDQHRDELDPDKTVLEELSEGF 411 (530)
T ss_pred CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC-CceEEeC-CceEEEEEEehhhhcCccCcHHHHHHhhC
Confidence 36788899999 677779999999999999999994432211 3332222 223344433322
Q ss_pred ------------hhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 003142 504 ------------ADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 569 (844)
Q Consensus 504 ------------~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~ 569 (844)
..++.. +...+...++||+. .|+..+..++.+|+|||||||||.||.....++ .+.|.++.+
T Consensus 412 ~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aL----e~aL~~f~G 487 (530)
T COG0488 412 PDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL----EEALLDFEG 487 (530)
T ss_pred ccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHH----HHHHHhCCC
Confidence 222211 22234455677755 566666777899999999999999999555554 455666777
Q ss_pred eEEEEEccchhHHh-hhccccceee
Q 003142 570 LLTIATTHHGELKT-LKYSNDFFEN 593 (844)
Q Consensus 570 t~vIitTHd~el~~-~a~~~~~v~n 593 (844)
| ||+||||.+|.. +|.++..+.+
T Consensus 488 t-vl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 488 T-VLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred e-EEEEeCCHHHHHhhcceEEEEcC
Confidence 7 999999999983 6666666554
No 258
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.71 E-value=3.2e-17 Score=177.81 Aligned_cols=155 Identities=17% Similarity=0.091 Sum_probs=104.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------ccccccccc-ccchhHHH---------
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSV--------- 502 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------~~vpa~~~~-~i~~~~~i--------- 502 (844)
++.++.+++|. ..|++++|+|||||||||||++|+++.. +..| .++|..... .....+.+
T Consensus 49 ~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~-p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~ 127 (282)
T cd03291 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE-PSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEY 127 (282)
T ss_pred cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHH
Confidence 35689999999 8999999999999999999999976532 1222 122321100 00111111
Q ss_pred -----hhhCCchhhHh-----------hhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 003142 503 -----FADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565 (844)
Q Consensus 503 -----~~~ig~~q~i~-----------~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~ 565 (844)
+..++....+. .....+|+++ +++..+.+++.+|+++||||||+|+|+.....+...++..+.
T Consensus 128 ~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~ 207 (282)
T cd03291 128 RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM 207 (282)
T ss_pred HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh
Confidence 11112211111 1124677655 556666678999999999999999999777766655555554
Q ss_pred hcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 566 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 566 ~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
.+.+ ||++||+.+...+|+++..+.+|.+.+.
T Consensus 208 -~~~t-IiiisH~~~~~~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 208 -ANKT-RILVTSKMEHLKKADKILILHEGSSYFY 239 (282)
T ss_pred -CCCE-EEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 4676 9999999988888999988889988653
No 259
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=5.9e-17 Score=172.40 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=104.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|+ .+|++++|+||||+|||||||+|+++... ...|. ++|....
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 45689999999 88999999999999999999999875321 11221 1121000
Q ss_pred -cccchhHHHh----------------------hhCCc----hhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 -AKVPWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 -~~i~~~~~i~----------------------~~ig~----~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
......+.+. ..++. ..........+|+++ +++..+.+++.+|+++||||||
T Consensus 96 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 175 (251)
T PRK14270 96 PFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175 (251)
T ss_pred cCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0011111111 11111 011223345667655 5566666788999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+|||+.....+.. ++..+.+ +.+ +|++||+.+.. .+|+++..+.+|.+...
T Consensus 176 ~~LD~~~~~~l~~-~L~~~~~-~~t-iiivsH~~~~~~~~~d~v~~l~~G~i~~~ 227 (251)
T PRK14270 176 SALDPISTLKIED-LMVELKK-EYT-IVIVTHNMQQASRVSDYTAFFLMGDLIEF 227 (251)
T ss_pred ccCCHHHHHHHHH-HHHHHHh-CCe-EEEEEcCHHHHHHhcCEEEEEECCeEEEe
Confidence 9999977777754 5555555 566 99999998765 68999999999998654
No 260
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=5.7e-17 Score=173.27 Aligned_cols=155 Identities=15% Similarity=0.217 Sum_probs=102.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~~ 493 (844)
+..++.+++|. .+|++++|+||||||||||||+|+++... +..|. +++....
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 45689999999 88999999999999999999999876431 01221 1111000
Q ss_pred --cccchhHHH----------------------hhhCCc----hhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 494 --AKVPWFDSV----------------------FADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 494 --~~i~~~~~i----------------------~~~ig~----~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
....+.+.+ +..++. .+.......++|+++ +++..+.+++.+|+++|||||
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEP 175 (258)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 001111111 111121 112223345677755 556666778899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhcccccee------eeEEEEe
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE------NACMEFD 599 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~------ng~v~fd 599 (844)
|+|+|+.....+. .++..+.+ +.| +|++||+.+.. .+|+++..+. +|.+...
T Consensus 176 t~~LD~~~~~~l~-~~l~~~~~-~~t-viivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 176 CSALDPISTLAIE-DLINELKQ-DYT-IVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred CccCCHHHHHHHH-HHHHHHhc-CCE-EEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999997777775 45555554 566 99999998765 6899888775 5777543
No 261
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.71 E-value=3.8e-17 Score=170.72 Aligned_cols=146 Identities=18% Similarity=0.219 Sum_probs=97.1
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-----------------------------ccccccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------------------LHILSSE 492 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-----------------------------~~vpa~~ 492 (844)
..++.+++|+ .+|++++|+|||||||||||++|+++... ..| .++|+..
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 99 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFL 99 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccc
Confidence 4689999999 88999999999999999999999765321 111 1222210
Q ss_pred cc--ccchhH---------------------HHhhhCCchhhH-hhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCC
Q 003142 493 YA--KVPWFD---------------------SVFADIGDEQSL-SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAG 547 (844)
Q Consensus 493 ~~--~i~~~~---------------------~i~~~ig~~q~i-~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sG 547 (844)
.. .....+ .++..++..+.. ......+|+++ +++..+.+++.+|++|||||||+|
T Consensus 100 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 179 (224)
T TIGR02324 100 RVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTAS 179 (224)
T ss_pred ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 00 000000 112222332221 23445567655 556666678899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccce
Q 003142 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFF 591 (844)
Q Consensus 548 lDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v 591 (844)
+|+.....+.. ++..+.+.|.| +|++||+.++. .+|+++..+
T Consensus 180 LD~~~~~~l~~-~l~~~~~~g~t-ii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 180 LDAANRQVVVE-LIAEAKARGAA-LIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CCHHHHHHHHH-HHHHHHhcCCE-EEEEeCCHHHHHHhcceeEec
Confidence 99987777764 55566667887 99999998877 478776543
No 262
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=3e-17 Score=192.84 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=102.8
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc----------ccccccc--cccch---------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSEY--AKVPW--------- 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~----------~vpa~~~--~~i~~--------- 498 (844)
+++.++.+++|+ .+|++++|+||||||||||||+|+++.... .|. +++.... .....
T Consensus 12 ~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 90 (530)
T PRK15064 12 GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS-AGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHT 90 (530)
T ss_pred CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhH
Confidence 345789999999 889999999999999999999997653211 111 1222000 00000
Q ss_pred --------------------------------------------hHHHhhhCCchhhH-hhhhhhhhHHhhH-HHHHHHh
Q 003142 499 --------------------------------------------FDSVFADIGDEQSL-SQSLSTFSGHLKQ-IGNIISQ 532 (844)
Q Consensus 499 --------------------------------------------~~~i~~~ig~~q~i-~~~lstfS~~~~r-l~~il~~ 532 (844)
+..++..+|..... ....+++|+++++ +..+.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL 170 (530)
T PRK15064 91 ELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQAL 170 (530)
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHH
Confidence 01123334443322 2346778887755 5555677
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEE
Q 003142 533 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 597 (844)
Q Consensus 533 a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~ 597 (844)
+.+|++|||||||+|||+.....+.. + +.+.|.| ||+||||.++. .+|+++..+.+|.+.
T Consensus 171 ~~~p~lLlLDEPt~~LD~~~~~~l~~-~---l~~~~~t-iiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 171 FSNPDILLLDEPTNNLDINTIRWLED-V---LNERNST-MIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred hcCCCEEEEcCCCcccCHHHHHHHHH-H---HHhCCCe-EEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 89999999999999999977665543 3 3446777 99999998876 689999888888773
No 263
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.9e-17 Score=191.63 Aligned_cols=154 Identities=16% Similarity=0.139 Sum_probs=107.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------cccccccc--ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSEY--AKV 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~~--~~i 496 (844)
++.++.+++|+ .+|++++|+||||||||||||+|+++... ..| .++|.... ..+
T Consensus 16 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 16 GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP-DAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 45689999999 89999999999999999999999765321 111 12222100 001
Q ss_pred chhHH------------------------HhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 497 PWFDS------------------------VFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 497 ~~~~~------------------------i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
...+. ++..++.........+++|++++ ++..+.+++.+|++|||||||+|||+.
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 174 (501)
T PRK11288 95 TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAR 174 (501)
T ss_pred CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHH
Confidence 11111 12222332233344567887664 556666789999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
....+. .++..+.+.|.+ ||++||+.++. .+|+++..+.+|++..
T Consensus 175 ~~~~l~-~~l~~~~~~g~t-iiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 175 EIEQLF-RVIRELRAEGRV-ILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred HHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 777775 455566777887 99999998776 6899999999998864
No 264
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.71 E-value=3.7e-17 Score=167.83 Aligned_cols=136 Identities=20% Similarity=0.197 Sum_probs=92.4
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------------------cccccccc--cccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEY--AKVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------------------~~vpa~~~--~~i~~ 498 (844)
++.++++++|. .+|++++|+||||||||||+|+|++... +..| .+++.... .....
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSA 90 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccchHHhhhheEEeccCcccccCCcH
Confidence 45789999999 8899999999999999999999976421 1111 12222100 00111
Q ss_pred h-----------------HHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHH
Q 003142 499 F-----------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560 (844)
Q Consensus 499 ~-----------------~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~I 560 (844)
. ..++..++..........++|+++ +++..+.+++.+|+++||||||+|+|+.....+. .+
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~-~~ 169 (198)
T TIGR01189 91 LENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLA-GL 169 (198)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HH
Confidence 1 112233444444455566788765 5566666789999999999999999997777765 45
Q ss_pred HHHHHhcCCeEEEEEccchh
Q 003142 561 LEAFAESGSLLTIATTHHGE 580 (844)
Q Consensus 561 le~L~~~g~t~vIitTHd~e 580 (844)
+..+.+.|.| +|++||+..
T Consensus 170 l~~~~~~~~t-ii~~sH~~~ 188 (198)
T TIGR01189 170 LRAHLARGGI-VLLTTHQDL 188 (198)
T ss_pred HHHHHhCCCE-EEEEEcccc
Confidence 5556667887 999999863
No 265
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2.2e-17 Score=192.65 Aligned_cols=154 Identities=13% Similarity=0.043 Sum_probs=107.3
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------------------ccccccc-----ccc
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------------------LHILSSE-----YAK 495 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------------------~~vpa~~-----~~~ 495 (844)
.+..+++|. ..|++++|+||||||||||||+|+++... ..| .++|... ...
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR-TAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC-CCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 478899999 88999999999999999999999654211 001 1222210 000
Q ss_pred cchhH---------------------------HHhhhCCch-hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCC
Q 003142 496 VPWFD---------------------------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 496 i~~~~---------------------------~i~~~ig~~-q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~s 546 (844)
...++ .++..++.. +.....+.++|++++ ++..+.+++.+|+||||||||+
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~ 425 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 11111 122233331 233445567887665 4555667789999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
|||+.....+. .++..+.+.|.+ ||++|||.++. .+|+++..+.+|.+.+..
T Consensus 426 ~LD~~~~~~l~-~~l~~l~~~g~t-viivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 426 GIDVGAKHEIY-NVIYELAAQGVA-VLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred CCCHhHHHHHH-HHHHHHHhCCCE-EEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 99998888776 456667778887 99999998776 699999999999887543
No 266
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4e-17 Score=190.85 Aligned_cols=152 Identities=13% Similarity=0.075 Sum_probs=106.3
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc---------------------ccccccccc--cc---ccc
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------SGLHILSSE--YA---KVP 497 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q---------------------~G~~vpa~~--~~---~i~ 497 (844)
++.+++|+ ..|++++|+||||||||||||+|+++..... .-.++|... .. .+.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 357 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFS 357 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCc
Confidence 78899999 8899999999999999999999976421100 001233210 00 011
Q ss_pred hhH------------------------------HHhhhCCch-hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCC
Q 003142 498 WFD------------------------------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 498 ~~~------------------------------~i~~~ig~~-q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~ 545 (844)
.++ .++..++.. +.......++|++++ ++..+.+++.+|++|||||||
T Consensus 358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 437 (510)
T PRK09700 358 IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPT 437 (510)
T ss_pred HHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 111 222334443 334455567887665 556666778999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
+|||+.....+. .++..+.+.|.+ ||++|||.++. .+|+++..+.+|.+..
T Consensus 438 ~~LD~~~~~~l~-~~l~~l~~~g~t-vi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 438 RGIDVGAKAEIY-KVMRQLADDGKV-ILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CCcCHHHHHHHH-HHHHHHHHCCCE-EEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 999997777775 566666677887 99999998765 6899999999998864
No 267
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.71 E-value=2.6e-17 Score=192.51 Aligned_cols=153 Identities=14% Similarity=0.060 Sum_probs=106.2
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc---------------------ccccccccc-----ccccc
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------SGLHILSSE-----YAKVP 497 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q---------------------~G~~vpa~~-----~~~i~ 497 (844)
++.+++|. .+|++++|+||||||||||||+|+++..... .-.|+|... .....
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 57888988 8899999999999999999999976421100 011233210 00001
Q ss_pred hhH------------------------HHhhhCCch-hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 498 WFD------------------------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 498 ~~~------------------------~i~~~ig~~-q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
..+ .++..++.. .......+.+|++++ ++..+.+++.+|+||||||||+|||+.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 111 122333443 334455567887665 455566778999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
....+. .++..+.+.|.+ ||++|||.++. .+|+++..+.+|.+.+.
T Consensus 438 ~~~~l~-~~l~~l~~~g~t-iIivsHd~~~i~~~~d~i~~l~~G~i~~~ 484 (510)
T PRK15439 438 ARNDIY-QLIRSIAAQNVA-VLFISSDLEEIEQMADRVLVMHQGEISGA 484 (510)
T ss_pred HHHHHH-HHHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 887776 456667777887 99999998776 68999999999988753
No 268
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.71 E-value=1.8e-17 Score=171.26 Aligned_cols=150 Identities=11% Similarity=0.067 Sum_probs=100.9
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccccc--ch
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--PW 498 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i--~~ 498 (844)
..++.+++|. .+|++++|+||||+|||||||+|+++... ..| .++|. ....+ ..
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q-~~~~~~~tv 98 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA-EEGKIEIDGIDISTIPLEDLRSSLTIIPQ-DPTLFSGTI 98 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCeEEECCEEhHHCCHHHHHhhEEEEec-CCcccCccH
Confidence 4689999999 88999999999999999999999765321 111 11222 10000 11
Q ss_pred hHHH--hhhCCchhh------HhhhhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 003142 499 FDSV--FADIGDEQS------LSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 569 (844)
Q Consensus 499 ~~~i--~~~ig~~q~------i~~~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~ 569 (844)
.+.+ +..+. .+. +......+|++ .+++..+.+++.+|+++||||||+|+|+.....+. .++..+. .|.
T Consensus 99 ~~~l~~~~~~~-~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~-~~~ 175 (207)
T cd03369 99 RSNLDPFDEYS-DEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQ-KTIREEF-TNS 175 (207)
T ss_pred HHHhcccCCCC-HHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHH-HHHHHhc-CCC
Confidence 1111 00010 011 12234567765 56677777889999999999999999997777665 4555554 477
Q ss_pred eEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 570 LLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 570 t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
| +|++||+.++...++++..+.+|.+..
T Consensus 176 t-iii~th~~~~~~~~d~v~~l~~g~i~~ 203 (207)
T cd03369 176 T-ILTIAHRLRTIIDYDKILVMDAGEVKE 203 (207)
T ss_pred E-EEEEeCCHHHHhhCCEEEEEECCEEEe
Confidence 6 999999988876788888888888754
No 269
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=6.9e-17 Score=171.85 Aligned_cols=154 Identities=16% Similarity=0.223 Sum_probs=103.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH-hh---cccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-MA---KSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~-~~---q~G~-----------------------~vpa~~~ 493 (844)
++.++++++|+ .+|++++|+||||||||||||+|+++.- .+ +.|. ++|. ..
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q-~~ 95 (252)
T PRK14255 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQ-QP 95 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEEC-CC
Confidence 45789999999 8899999999999999999999977531 11 1221 1222 10
Q ss_pred cc--cchhHHHh----------------------hhCCc----hhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 494 AK--VPWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 494 ~~--i~~~~~i~----------------------~~ig~----~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
.. ..+.+.+. ..++. ..........+|+++ +++..+.+++.+|+++|||||
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 175 (252)
T PRK14255 96 NPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEP 175 (252)
T ss_pred ccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 00 01111111 00111 011223334567655 556666678999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|+|||+.....+.. ++..+.+ +.| +|++||+.++. .+|+++..+.+|.+..+
T Consensus 176 t~~LD~~~~~~l~~-~l~~~~~-~~t-ii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 176 TSALDPISSTQIEN-MLLELRD-QYT-IILVTHSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred CccCCHHHHHHHHH-HHHHHHh-CCE-EEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999988777754 5555555 466 99999998876 68999999999998754
No 270
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.71 E-value=4.2e-17 Score=191.53 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=107.3
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh----cccc-------------------------cccccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-------------------------HILSSE 492 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----q~G~-------------------------~vpa~~ 492 (844)
..++.+++|+ ..|++++|+||||||||||||+|+++.... ..|. ++|+..
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 4789999999 889999999999999999999997664320 1121 122210
Q ss_pred cc-c---cchhH----------------------HHhhhCCchh---hHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEe
Q 003142 493 YA-K---VPWFD----------------------SVFADIGDEQ---SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLD 542 (844)
Q Consensus 493 ~~-~---i~~~~----------------------~i~~~ig~~q---~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLD 542 (844)
.. . ..+.+ .++..++..+ ......+++|++++ ++..+.+++.+|++||||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllD 181 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIAD 181 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 00 0 00000 1122233322 12445567887664 556666789999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 543 EIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 543 EP~sGlDp~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|||+||||.....+.. ++..+... |.| ||++||+.+.. .+|+++..+.+|++..+
T Consensus 182 EPt~~LD~~~~~~l~~-~l~~l~~~~g~t-vi~vtHd~~~~~~~~dri~~l~~G~i~~~ 238 (529)
T PRK15134 182 EPTTALDVSVQAQILQ-LLRELQQELNMG-LLFITHNLSIVRKLADRVAVMQNGRCVEQ 238 (529)
T ss_pred CCCCccCHHHHHHHHH-HHHHHHHhcCCe-EEEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999987777764 55566554 787 99999998766 68999999999998654
No 271
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=8.7e-17 Score=171.30 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=103.2
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh-h---cccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~-~---q~G~-----------------------~vpa~~~ 493 (844)
++.++++++|. .+|++++|+||||||||||||+|+++.-. + ..|. +++.. .
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~-~ 96 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQR-P 96 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecC-C
Confidence 45789999999 89999999999999999999999765321 1 1221 11110 0
Q ss_pred ccc--chhHHH----------------------hhhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 494 AKV--PWFDSV----------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 494 ~~i--~~~~~i----------------------~~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
..+ ...+.+ +..++.. ..+......+|+++ +++..+.+++.+|+++|||||
T Consensus 97 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (253)
T PRK14261 97 NPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEP 176 (253)
T ss_pred ccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 000 111111 0011110 11223344567655 566667778999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|+|+|+.....+. .++..+.+ +.| +|++||+.+.. .+|+++..+.+|++...
T Consensus 177 ~~gLD~~~~~~l~-~~l~~~~~-~~t-vii~sh~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 177 CSALDPIATAKIE-DLIEDLKK-EYT-VIIVTHNMQQAARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred cccCCHHHHHHHH-HHHHHHhh-Cce-EEEEEcCHHHHHhhCCEEEEEECCEEEEc
Confidence 9999998777775 45555655 566 99999998776 68999999999988643
No 272
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.71 E-value=4.1e-17 Score=170.86 Aligned_cols=144 Identities=21% Similarity=0.171 Sum_probs=96.6
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhc---------------ccccccccccc----ccchhH-------------
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------SGLHILSSEYA----KVPWFD------------- 500 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q---------------~G~~vpa~~~~----~i~~~~------------- 500 (844)
.+|++++|+||||||||||+|+|+++..... .-.++|..... .....+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~ 83 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWL 83 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccccccc
Confidence 4678999999999999999999976532111 01122321100 011111
Q ss_pred ------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 003142 501 ------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567 (844)
Q Consensus 501 ------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~ 567 (844)
.++..++..+........+|++++ ++..+.+++.+|+++||||||+|+|+.....+.. ++..+.+.
T Consensus 84 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~-~l~~~~~~ 162 (223)
T TIGR03771 84 RRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE-LFIELAGA 162 (223)
T ss_pred cCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHc
Confidence 112233333334445566787664 5566667899999999999999999988887765 45556666
Q ss_pred CCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 568 GSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 568 g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|.| +|++||+.+.. .+|+++..+ +|.+..+
T Consensus 163 ~~t-vii~sH~~~~~~~~~d~i~~l-~G~i~~~ 193 (223)
T TIGR03771 163 GTA-ILMTTHDLAQAMATCDRVVLL-NGRVIAD 193 (223)
T ss_pred CCE-EEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 887 99999998755 689988877 7888654
No 273
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=4.5e-17 Score=161.09 Aligned_cols=140 Identities=21% Similarity=0.292 Sum_probs=92.5
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccch--hHHHhhhCCchhhHhhhhhhh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW--FDSVFADIGDEQSLSQSLSTF 519 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~--~~~i~~~ig~~q~i~~~lstf 519 (844)
+.+..++++. .+|++++|+||||+|||||+++|+++... ..|..... ...+.. .......++. +..+
T Consensus 12 ~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~--~~~~~~~~~~~~~~~i~~-------~~ql 81 (157)
T cd00267 12 RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILID--GKDIAKLPLEELRRRIGY-------VPQL 81 (157)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEEC--CEEcccCCHHHHHhceEE-------EeeC
Confidence 4688899999 88899999999999999999999654321 12211110 000000 0011111111 0116
Q ss_pred hHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhccccceeee
Q 003142 520 SGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENA 594 (844)
Q Consensus 520 S~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~-~a~~~~~v~ng 594 (844)
|+++ +++..+.+++.+|+++||||||+|+|+.....+... +..+...+.+ +|++||+.++.. +|+++..+.+|
T Consensus 82 S~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~-l~~~~~~~~t-ii~~sh~~~~~~~~~d~i~~l~~g 156 (157)
T cd00267 82 SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL-LRELAEEGRT-VIIVTHDPELAELAADRVIVLKDG 156 (157)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHHCCCE-EEEEeCCHHHHHHhCCEEEEEeCc
Confidence 6655 556666778899999999999999999887777654 4455555676 999999988875 56777666553
No 274
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.71 E-value=2.9e-16 Score=188.18 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=98.8
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc----------cccccc-cccc-chhHH------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSE-YAKV-PWFDS------ 501 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~----------~vpa~~-~~~i-~~~~~------ 501 (844)
+++.++.+++|. .+|++++|+||||||||||||+|+++.... .|. +++... .... ..++.
T Consensus 14 ~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~-~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~ 92 (635)
T PRK11147 14 SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD-DGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIE 92 (635)
T ss_pred CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhH
Confidence 356799999999 889999999999999999999997653221 121 111100 0000 00000
Q ss_pred -------------------------------------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHH
Q 003142 502 -------------------------------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIIS 531 (844)
Q Consensus 502 -------------------------------------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~ 531 (844)
++..+|.. ....++++|+++ +++..+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAra 170 (635)
T PRK11147 93 EQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRA 170 (635)
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHH
Confidence 01111111 123456788866 55666667
Q ss_pred hCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEE
Q 003142 532 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 597 (844)
Q Consensus 532 ~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~ 597 (844)
++.+|+||||||||+|||+.....+. +.|.+.+.+ ||+||||.++. .+|+++..+.+|.+.
T Consensus 171 L~~~P~lLLLDEPt~~LD~~~~~~L~----~~L~~~~~t-vlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 171 LVSNPDVLLLDEPTNHLDIETIEWLE----GFLKTFQGS-IIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred HhcCCCEEEEcCCCCccCHHHHHHHH----HHHHhCCCE-EEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 89999999999999999996655543 333344566 99999998877 588988888888764
No 275
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=9e-17 Score=170.69 Aligned_cols=154 Identities=14% Similarity=0.199 Sum_probs=103.4
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh----cccc----------------------cccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL----------------------HILSSEYA 494 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----q~G~----------------------~vpa~~~~ 494 (844)
++.++.+++|. .+|++++|+||||||||||||+|+++.-.. ..|. ++|. ...
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q-~~~ 93 (249)
T PRK14253 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQ-KPN 93 (249)
T ss_pred CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEec-CCC
Confidence 45789999999 899999999999999999999997754321 1221 1121 000
Q ss_pred c--cchhHHHh----------------------hhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 495 K--VPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 495 ~--i~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
. ....+.+. ..++.. .........+|+++ +++..+.+++.+|+||||||||
T Consensus 94 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 173 (249)
T PRK14253 94 PFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPT 173 (249)
T ss_pred cCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0 01111111 001110 11122334567655 5566666788999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+|+|+.....+. .++..+.+ +.| ||++||+.+.. .+|+++..+.+|++...
T Consensus 174 ~~LD~~~~~~l~-~~l~~~~~-~~t-ii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 174 SALDPIATHKIE-ELMEELKK-NYT-IVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred ccCCHHHHHHHH-HHHHHHhc-CCe-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999997777665 45666655 566 99999998775 68999999999998754
No 276
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=7.7e-17 Score=171.39 Aligned_cols=156 Identities=17% Similarity=0.250 Sum_probs=104.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh----cccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|. .+|++++|+||||+|||||||+|+++.... ..|. +++....
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 45789999999 889999999999999999999998764221 1121 1111000
Q ss_pred --cccchhHHHh---hhCC--ch---------------------hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 494 --AKVPWFDSVF---ADIG--DE---------------------QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 494 --~~i~~~~~i~---~~ig--~~---------------------q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
....+.+.+. ...+ .. .......+.+|+++ +++..+.+++.+|+++|||||
T Consensus 96 ~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 175 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEP 175 (252)
T ss_pred cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 0011122211 0001 00 11122335577655 556667788999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
|+|+|+.....+.. +++.+.+ +.| +|++||+.++. .+|+++..+.+|++..+.
T Consensus 176 ~~~LD~~~~~~l~~-~l~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 176 TSALDPASTARIED-LMTDLKK-VTT-IIIVTHNMHQAARVSDTTSFFLVGDLVEHG 229 (252)
T ss_pred CccCCHHHHHHHHH-HHHHHhc-CCe-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999977777654 5556654 676 99999998766 589999999999987543
No 277
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=5.8e-17 Score=166.12 Aligned_cols=141 Identities=18% Similarity=0.152 Sum_probs=93.6
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-----------------cccccccc--cccchhH--
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-----------------LHILSSEY--AKVPWFD-- 500 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-----------------~~vpa~~~--~~i~~~~-- 500 (844)
+.+.+ ++|+ .+|++++|+||||||||||+++|+++... ..| .+++.... ......+
T Consensus 14 ~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l 91 (195)
T PRK13541 14 KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-SSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENL 91 (195)
T ss_pred cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHH
Confidence 44554 8888 88999999999999999999999765321 111 11221000 0011111
Q ss_pred --------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 003142 501 --------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565 (844)
Q Consensus 501 --------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~ 565 (844)
.++..++.........+.+|+++ +++..+.+++.+|+++||||||+|+|+.....+. .++....
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~ 170 (195)
T PRK13541 92 KFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLN-NLIVMKA 170 (195)
T ss_pred HHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHH
Confidence 12233344444455566788765 5566666789999999999999999997776665 4555556
Q ss_pred hcCCeEEEEEccchhHHhhhcc
Q 003142 566 ESGSLLTIATTHHGELKTLKYS 587 (844)
Q Consensus 566 ~~g~t~vIitTHd~el~~~a~~ 587 (844)
+.|.+ +|++||+.+....++.
T Consensus 171 ~~~~t-iii~sh~~~~i~~~~~ 191 (195)
T PRK13541 171 NSGGI-VLLSSHLESSIKSAQI 191 (195)
T ss_pred hCCCE-EEEEeCCccccchhhe
Confidence 67887 9999999887766553
No 278
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=8.6e-17 Score=172.15 Aligned_cols=156 Identities=16% Similarity=0.226 Sum_probs=105.0
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-----cc---------------------cccccccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG---------------------LHILSSEY 493 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-----~G---------------------~~vpa~~~ 493 (844)
+++.++.+++|. .+|++++|+|||||||||||++|++...... .| .++|....
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 456789999999 8899999999999999999999976532110 01 11221100
Q ss_pred --cccchhHHH----------------------hhhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 494 --AKVPWFDSV----------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 494 --~~i~~~~~i----------------------~~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
......+.+ +..++.. .........+|+++ +++..+.+++.+|+++|||||
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEP 180 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 001111111 1112221 11223334567655 556667778999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|+|||+.....+. .++..+.+ ++| +|++||+.++. .+|+++..+.+|.+...
T Consensus 181 t~~LD~~~~~~l~-~~l~~~~~-~~t-iilvsh~~~~~~~~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 181 TSMIDIVNSQAIE-KLITELKN-EIA-IVIVSHNPQQVARVADYVAFLYNGELVEW 233 (257)
T ss_pred CccCCHHHHHHHH-HHHHHHhc-CcE-EEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999997777765 45555654 576 99999998877 68999999988888654
No 279
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.70 E-value=8.1e-17 Score=174.13 Aligned_cols=152 Identities=16% Similarity=0.089 Sum_probs=105.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccccc--c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i--~ 497 (844)
+..++.+++|. .+|++++|+||||+||||||++|.++.. ..| .++|. ....+ .
T Consensus 16 ~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v~q-~~~lf~~t 92 (275)
T cd03289 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQ-KVFIFSGT 92 (275)
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEEEECC-Ccccchhh
Confidence 45689999999 8999999999999999999999976642 112 12232 11100 0
Q ss_pred hhHH--------------HhhhCCchhhHhhhhhh-----------hhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 498 WFDS--------------VFADIGDEQSLSQSLST-----------FSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 498 ~~~~--------------i~~~ig~~q~i~~~lst-----------fS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
+.++ .+..+|....+...... ||+++ +++..+.+++.+|+++||||||+|+|+.
T Consensus 93 v~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~ 172 (275)
T cd03289 93 FRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPI 172 (275)
T ss_pred HHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHH
Confidence 0111 12233444333333332 77766 5566666789999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
....+...+ ..+. .++| ||++||+.+....|+++..+.+|.+.+.
T Consensus 173 ~~~~l~~~l-~~~~-~~~t-ii~isH~~~~i~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 173 TYQVIRKTL-KQAF-ADCT-VILSEHRIEAMLECQRFLVIEENKVRQY 217 (275)
T ss_pred HHHHHHHHH-HHhc-CCCE-EEEEECCHHHHHhCCEEEEecCCeEeec
Confidence 777665444 4443 4776 9999999988877998888888888653
No 280
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.5e-17 Score=175.72 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=102.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|. .+|++++|+|||||||||||++|+++... +..|. ++|.. .
T Consensus 51 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~-~ 129 (285)
T PRK14254 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQK-P 129 (285)
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecC-C
Confidence 45789999999 88999999999999999999999766421 11221 12211 0
Q ss_pred ccc--chhHHH--------------------hhhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCC
Q 003142 494 AKV--PWFDSV--------------------FADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 494 ~~i--~~~~~i--------------------~~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~s 546 (844)
..+ .+.+.+ +..++.. +.+......+|+++ +++..+.+++.+|+||||||||+
T Consensus 130 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts 209 (285)
T PRK14254 130 NPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPAS 209 (285)
T ss_pred ccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 000 111111 1112221 12233445677755 55666677899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhcccc-ceeeeEEEEe
Q 003142 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSND-FFENACMEFD 599 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~-~v~ng~v~fd 599 (844)
|||+.....+. .++..+.+ +.+ +|++||+.++. .+|+++. .+.+|++..+
T Consensus 210 ~LD~~~~~~l~-~~L~~~~~-~~t-iii~tH~~~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 210 ALDPVATSKIE-DLIEELAE-EYT-VVIVTHNMQQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred CCCHHHHHHHH-HHHHHHhc-CCE-EEEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence 99997777665 45556655 366 99999998876 5788764 4578888654
No 281
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=7.6e-17 Score=173.65 Aligned_cols=148 Identities=14% Similarity=0.262 Sum_probs=97.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~~ 493 (844)
+..++.+++|+ .+|++++|+|||||||||||++|+++... +..|. ++|. ..
T Consensus 25 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q-~~ 103 (269)
T PRK14259 25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQ-QP 103 (269)
T ss_pred CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEcc-CC
Confidence 45689999999 89999999999999999999999776321 12221 1121 00
Q ss_pred ccc--chhHHH--------------------hhhCCc----hhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCC
Q 003142 494 AKV--PWFDSV--------------------FADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 494 ~~i--~~~~~i--------------------~~~ig~----~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~s 546 (844)
..+ +..+.+ +..++. ..........+|+++ +++..+.+++.+|++|||||||+
T Consensus 104 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 183 (269)
T PRK14259 104 NPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCS 183 (269)
T ss_pred ccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 000 111111 011111 011122334567655 55666677899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceee
Q 003142 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 593 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~n 593 (844)
|||+.....+.. ++..+.+ +.+ ||++||+.++. .+|+++..+.+
T Consensus 184 gLD~~~~~~l~~-~l~~~~~-~~t-iiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 184 ALDPISTLKIEE-TMHELKK-NFT-IVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred cCCHHHHHHHHH-HHHHHhc-CCE-EEEEeCCHHHHHHhcCEEEEEec
Confidence 999977777754 5555554 676 99999998765 68888887775
No 282
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.8e-17 Score=193.18 Aligned_cols=155 Identities=13% Similarity=0.043 Sum_probs=108.4
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-----------------------cccccccccc----c
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----------------------SGLHILSSEY----A 494 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-----------------------~G~~vpa~~~----~ 494 (844)
..++++++|+ ..|++++|+||||||||||+|+|+++..... .-.++++... .
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~ 416 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP 416 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence 4589999999 8899999999999999999999975421100 0112332110 0
Q ss_pred ccchhH----------------------HHhhhCCch-hhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 495 KVPWFD----------------------SVFADIGDE-QSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 495 ~i~~~~----------------------~i~~~ig~~-q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
...+.+ .++..+|.. .........+|+++++ +..+.+++.+|+||||||||+|||+
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~ 496 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 496 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 011111 123334443 3345556778887654 5566677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 551 LEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.....+.. ++..+.+ .|.+ ||++|||.++. .+|+++..+.+|.+...
T Consensus 497 ~~~~~i~~-ll~~l~~~~g~t-vi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 497 SIRGQIIN-LLLDLQRDFGIA-YLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 88887764 5555654 4887 99999998876 58999999999988643
No 283
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=9.9e-17 Score=170.67 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=103.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc----ccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----SGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q----~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|. .+|++++|+|||||||||||++|+++.-... .|. ++|.. .
T Consensus 16 ~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~-~ 94 (251)
T PRK14249 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ-P 94 (251)
T ss_pred CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecC-C
Confidence 45689999999 8899999999999999999999977543210 121 11110 0
Q ss_pred ccc--chhHHHh----------------------hhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 494 AKV--PWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 494 ~~i--~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
..+ ...+.+. ..++.. .........+|+++ +++..+.+++.+|++||||||
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP 174 (251)
T PRK14249 95 NPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEP 174 (251)
T ss_pred ccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 000 1111110 011111 11223334567655 556666778999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|+|||+.....+.. ++..+. .+.| ||++||+.+.. .+|+++..+.+|.+...
T Consensus 175 t~~LD~~~~~~l~~-~l~~~~-~~~t-ilivsh~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 175 CSALDPVSTMRIEE-LMQELK-QNYT-IAIVTHNMQQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred CccCCHHHHHHHHH-HHHHHh-cCCE-EEEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence 99999977777754 555564 5776 99999998776 68899999999988654
No 284
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.4e-17 Score=174.70 Aligned_cols=147 Identities=14% Similarity=0.233 Sum_probs=98.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh-h---cccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~-~---q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|. ..|++++|+||||||||||||+|+++.-. + ..|. ++|. ..
T Consensus 32 ~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q-~~ 110 (274)
T PRK14265 32 GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQ-RP 110 (274)
T ss_pred CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEcc-CC
Confidence 45689999999 88999999999999999999999765321 0 1221 1222 10
Q ss_pred ccc--chhHHHh--------------------hhCCc----hhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCC
Q 003142 494 AKV--PWFDSVF--------------------ADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 494 ~~i--~~~~~i~--------------------~~ig~----~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~s 546 (844)
..+ .+++.+. ..++. .+........+|+++ +++..+.+++.+|++|||||||+
T Consensus 111 ~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~ 190 (274)
T PRK14265 111 NPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCS 190 (274)
T ss_pred ccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 000 1111111 11111 011223335577655 56666778899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhcccccee
Q 003142 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE 592 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ 592 (844)
|||+.....+.. ++..+.+ +.+ ||++||+.+.. .+|+++..+.
T Consensus 191 ~LD~~~~~~l~~-~L~~~~~-~~t-iii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 191 ALDPISTRQVEE-LCLELKE-QYT-IIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred cCCHHHHHHHHH-HHHHHhc-CCE-EEEEeCCHHHHHHhCCEEEEEe
Confidence 999988777765 5555554 666 99999998766 6888888886
No 285
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.2e-16 Score=171.36 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=102.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh----cccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----q~G~-----------------------~vpa~~~ 493 (844)
+..++.+++|. .+|++++|+||||+||||||++|+++.... ..|. +++. ..
T Consensus 19 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q-~~ 97 (261)
T PRK14258 19 TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHP-KP 97 (261)
T ss_pred CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEec-CC
Confidence 34688999999 899999999999999999999998764321 1121 1111 00
Q ss_pred cc--cchhHHHh----------------------hhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 494 AK--VPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 494 ~~--i~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
.. ..+.+.+. ..++.. .........+|+++ +++..+.+++.+|++||||||
T Consensus 98 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP 177 (261)
T PRK14258 98 NLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177 (261)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 11111111 011110 01122234567765 556666678999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceee-----eEEEEe
Q 003142 545 GAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFEN-----ACMEFD 599 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~n-----g~v~fd 599 (844)
|+|+|+.....+.. ++..+.. .|.| +|++||+.++. .+|+++..+.+ |.+...
T Consensus 178 ~~~LD~~~~~~l~~-~l~~l~~~~~~t-iiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 178 CFGLDPIASMKVES-LIQSLRLRSELT-MVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred CccCCHHHHHHHHH-HHHHHHHhCCCE-EEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 99999977777654 4445543 4776 99999998766 68999999998 888654
No 286
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=6.4e-17 Score=168.19 Aligned_cols=157 Identities=16% Similarity=0.120 Sum_probs=114.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc----------------ccccc---cccc-----c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------------HILSS---EYAK-----V 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~----------------~vpa~---~~~~-----i 496 (844)
..++++|++|+ ..|+.++|+|+||||||||||+|+++..+.. |. +-|.. ++.. +
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~-G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS-GKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC-ceEEEcceEehhhhcccCCCcccchHHHHHHHHHHh
Confidence 46899999999 8889999999999999999999976543321 11 11110 0000 0
Q ss_pred c--------hhHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 003142 497 P--------WFDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567 (844)
Q Consensus 497 ~--------~~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~ 567 (844)
+ .++.+..--.+.+.+.+.+.+||.+| .|+...++...+|++|||||..+--|+.-... +...+..+.++
T Consensus 118 G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K-~~~rl~e~~~~ 196 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEK-CLERLNELVEK 196 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHH-HHHHHHHHHHc
Confidence 0 01122211234566788889999988 47788888889999999999999999965555 45566677677
Q ss_pred CCeEEEEEccchhHH-hhhccccceeeeEEEEecc
Q 003142 568 GSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 601 (844)
Q Consensus 568 g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~~ 601 (844)
+.| +|++||++... .+|++...+.+|.+.+.++
T Consensus 197 ~~t-iv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~ 230 (249)
T COG1134 197 NKT-IVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230 (249)
T ss_pred CCE-EEEEECCHHHHHHhcCeeEEEeCCEEEEcCC
Confidence 776 99999998665 7999999999999988653
No 287
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=171.90 Aligned_cols=155 Identities=19% Similarity=0.270 Sum_probs=104.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~~ 493 (844)
+..++.+++|+ ..|++++|+||||||||||||+|+++... +..|. ++|....
T Consensus 36 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 115 (271)
T PRK14238 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN 115 (271)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc
Confidence 45689999999 88999999999999999999999876431 12231 1111000
Q ss_pred c-ccchhHHHhh-----hCCc---------------------hhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 A-KVPWFDSVFA-----DIGD---------------------EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 ~-~i~~~~~i~~-----~ig~---------------------~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
. .....+.+.. .... ...+......+|+++ +++..+.+++.+|+++||||||
T Consensus 116 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt 195 (271)
T PRK14238 116 PFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPT 195 (271)
T ss_pred cccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 0 0011122210 0000 011122334567655 5566666788999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+|+|+.....+.. ++..+.+ +.| +|++||+.++. .+|+++..+.+|.+...
T Consensus 196 ~~LD~~~~~~l~~-~l~~~~~-~~t-iiivsH~~~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 196 SALDPISTLKVEE-LVQELKK-DYS-IIIVTHNMQQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred CcCCHHHHHHHHH-HHHHHHc-CCE-EEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999988877765 5555655 676 99999998875 68999999999998654
No 288
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.70 E-value=4.7e-17 Score=189.42 Aligned_cols=154 Identities=14% Similarity=0.017 Sum_probs=106.8
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------c-ccccccccc-----cc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------S-GLHILSSEY-----AK 495 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~-G~~vpa~~~-----~~ 495 (844)
+.++.+++|. ..|++++|+||||||||||||+|+++.-... . -.++|.... ..
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 3588999999 8899999999999999999999975431100 0 012222100 00
Q ss_pred cchh---------------------------HHHhhhCCch-hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCC
Q 003142 496 VPWF---------------------------DSVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 496 i~~~---------------------------~~i~~~ig~~-q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~s 546 (844)
..++ ..++..++.. +.......++|++++ ++..+.+++.+|++|||||||+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~ 420 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR 420 (491)
T ss_pred CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 0000 0111222332 233455667887665 4555667799999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
|+|+.....+.. ++..+.++|.| ||++|||.++. .+|+++..+.+|.+.+
T Consensus 421 gLD~~~~~~~~~-~l~~l~~~~~t-vi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 421 GIDVGAKFEIYQ-LIAELAKKDKG-IIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred ccChhHHHHHHH-HHHHHHHCCCE-EEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 999988887764 66667778887 99999998766 6999999999998874
No 289
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.4e-17 Score=193.41 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=108.5
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-----cc-----------------------------cc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-----------------------------LH 487 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-----~G-----------------------------~~ 487 (844)
..++.+++|+ ..|++++|+||||||||||||+|+++..... .| .+
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~ 108 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM 108 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence 4689999999 8899999999999999999999975531100 00 11
Q ss_pred ccccc----ccccchhH----------------------HHhhhCCch---hhHhhhhhhhhHHhh-HHHHHHHhCCCCc
Q 003142 488 ILSSE----YAKVPWFD----------------------SVFADIGDE---QSLSQSLSTFSGHLK-QIGNIISQSTSQS 537 (844)
Q Consensus 488 vpa~~----~~~i~~~~----------------------~i~~~ig~~---q~i~~~lstfS~~~~-rl~~il~~a~~p~ 537 (844)
+++.. ...+.+.+ .++..+|.. ........++|++++ |+..+.+++.+|+
T Consensus 109 v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~ 188 (623)
T PRK10261 109 IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPA 188 (623)
T ss_pred EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCC
Confidence 22211 00011111 123334442 234455677888765 5566667899999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 538 LVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 538 LLLLDEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
||||||||+|||+.....+. .++..+.+ .|.+ ||++|||.++. .+|+++..+.+|.+..+
T Consensus 189 lLllDEPt~~LD~~~~~~l~-~ll~~l~~~~g~t-vi~itHdl~~~~~~adri~vl~~G~i~~~ 250 (623)
T PRK10261 189 VLIADEPTTALDVTIQAQIL-QLIKVLQKEMSMG-VIFITHDMGVVAEIADRVLVMYQGEAVET 250 (623)
T ss_pred EEEEeCCCCccCHHHHHHHH-HHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEeeCCeeccc
Confidence 99999999999997777765 56667765 4887 99999998765 79999999999998643
No 290
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=4.8e-17 Score=191.04 Aligned_cols=150 Identities=19% Similarity=0.135 Sum_probs=104.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------cccccccc----cccchhH------
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEY----AKVPWFD------ 500 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------~~vpa~~~----~~i~~~~------ 500 (844)
++.++.+++|. ..|++++|+||||||||||||+|+++... ..| .++|.... ..+...+
T Consensus 331 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~ 409 (530)
T PRK15064 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP-DSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWR 409 (530)
T ss_pred CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhc
Confidence 45688999999 88999999999999999999999765321 111 12332110 0011111
Q ss_pred ----------HHhhhCCch-hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003142 501 ----------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568 (844)
Q Consensus 501 ----------~i~~~ig~~-q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g 568 (844)
.++..++.. .......+++|++++ ++..+.+++.+|++|||||||+|||+.....+.. ++. +.+
T Consensus 410 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~---~~~ 485 (530)
T PRK15064 410 QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM-ALE---KYE 485 (530)
T ss_pred cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH-HHH---HCC
Confidence 223344442 344556678888665 4555667789999999999999999977766654 333 335
Q ss_pred CeEEEEEccchhHH-hhhccccceeeeEEE
Q 003142 569 SLLTIATTHHGELK-TLKYSNDFFENACME 597 (844)
Q Consensus 569 ~t~vIitTHd~el~-~~a~~~~~v~ng~v~ 597 (844)
.| ||++|||.++. .+|+++..+.+|.+.
T Consensus 486 ~t-vi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 486 GT-LIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred CE-EEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 66 99999998876 589999988888875
No 291
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.70 E-value=5.8e-17 Score=189.12 Aligned_cols=154 Identities=15% Similarity=0.102 Sum_probs=106.4
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc---------------------cccccccccc-----cccc
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------SGLHILSSEY-----AKVP 497 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q---------------------~G~~vpa~~~-----~~i~ 497 (844)
+..+++|. ..|++++|+||||||||||||+|+++..... .-.++|.... ..+.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 68888999 8899999999999999999999975431100 0112232110 0011
Q ss_pred hhH---------------------------HHhhhCCch-hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCC
Q 003142 498 WFD---------------------------SVFADIGDE-QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGT 548 (844)
Q Consensus 498 ~~~---------------------------~i~~~ig~~-q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGl 548 (844)
+.+ .++..++.. ........++|++++ ++..+.+++.+|++|||||||+||
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L 426 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV 426 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence 111 122333332 233445567887665 555666778999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 549 Dp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
|+.....+. .++..+.+.|.+ ||++|||.++. .+|+++..+.+|.+..+.
T Consensus 427 D~~~~~~l~-~~l~~~~~~g~t-viivtHd~~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 427 DVGAKKEIY-QLINQFKAEGLS-IILVSSEMPEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred CHhHHHHHH-HHHHHHHHCCCE-EEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 998888776 455666767887 99999998765 699999999999886543
No 292
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.5e-16 Score=172.03 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=104.9
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc----------------------ccccccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL----------------------HILSSEY 493 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~----------------------~vpa~~~ 493 (844)
+++.++.+++|+ .+|++++|+||||+|||||||+|+++... ...|. ++|....
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 111 (276)
T PRK14271 32 AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN 111 (276)
T ss_pred CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCc
Confidence 356789999999 89999999999999999999999775431 01221 1221100
Q ss_pred c-ccchhHHH----------------------hhhCCchh----hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 A-KVPWFDSV----------------------FADIGDEQ----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 ~-~i~~~~~i----------------------~~~ig~~q----~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
. .....+.+ +..++... .+......+|+++ +++..+.+++.+|+||||||||
T Consensus 112 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt 191 (276)
T PRK14271 112 PFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPT 191 (276)
T ss_pred cCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 0 00111111 11122211 1122344577655 5566667788999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
+|+|+.....+.. ++..+.+ +.| ||++||+.+.. .+|+++..+.+|++...
T Consensus 192 ~~LD~~~~~~l~~-~L~~~~~-~~t-iiivsH~~~~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 192 SALDPTTTEKIEE-FIRSLAD-RLT-VIIVTHNLAQAARISDRAALFFDGRLVEE 243 (276)
T ss_pred ccCCHHHHHHHHH-HHHHHhc-CCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999977777754 5555655 466 99999998765 68999999999998654
No 293
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.6e-16 Score=171.35 Aligned_cols=154 Identities=16% Similarity=0.180 Sum_probs=103.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|+ .+|++++|+||||||||||+|+|+++... +..|. ++|. ..
T Consensus 37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q-~~ 115 (272)
T PRK14236 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQ-RP 115 (272)
T ss_pred CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEec-CC
Confidence 45789999999 89999999999999999999999776321 12221 1121 00
Q ss_pred ccc--chhHHHh----------------------hhCCchh----hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 494 AKV--PWFDSVF----------------------ADIGDEQ----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 494 ~~i--~~~~~i~----------------------~~ig~~q----~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
..+ .+.+.+. ..++..+ ........+|+++ +++..+.+++.+|+++|||||
T Consensus 116 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP 195 (272)
T PRK14236 116 NPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEP 195 (272)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 000 1111111 0111111 1112234567655 556666778999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|+|+|+.....+. .++..+.+ +.+ +|++||+.+.. .+|+++..+.+|.+..+
T Consensus 196 t~gLD~~~~~~l~-~~L~~~~~-~~t-iiivtH~~~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 196 TSALDPISTLKIE-ELITELKS-KYT-IVIVTHNMQQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred cccCCHHHHHHHH-HHHHHHHh-CCe-EEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence 9999997777665 45555555 676 99999998775 68999999999998654
No 294
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1e-16 Score=160.36 Aligned_cols=137 Identities=23% Similarity=0.250 Sum_probs=91.6
Q ss_pred cCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcc-----cccc-----------------cccccccc
Q 003142 440 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-----GLHI-----------------LSSEYAKV 496 (844)
Q Consensus 440 ~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~-----G~~v-----------------pa~~~~~i 496 (844)
.+..+++.+++|. ..|+++.|+||||+|||||||+|+++.-.... |..+ |+ -...+
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~g-iK~eL 90 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPG-IKTEL 90 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhcccc-ccchh
Confidence 4567899999999 89999999999999999999999765432210 0000 11 11122
Q ss_pred chhHH------------------HhhhCCchhhHhhhhhhhhHHhhHHHHHHH-hCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 497 PWFDS------------------VFADIGDEQSLSQSLSTFSGHLKQIGNIIS-QSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 497 ~~~~~------------------i~~~ig~~q~i~~~lstfS~~~~rl~~il~-~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
+.+++ .+..+|.....+....++|.+++|...+.. .+..++|+|||||++++|. ++.++.
T Consensus 91 Ta~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk-~g~a~l 169 (209)
T COG4133 91 TALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDK-EGVALL 169 (209)
T ss_pred hHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCH-HHHHHH
Confidence 22222 122233333334445667777766655554 5789999999999999999 555555
Q ss_pred HHHHHHHHhcCCeEEEEEccch
Q 003142 558 MSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 558 ~~Ile~L~~~g~t~vIitTHd~ 579 (844)
..++..-..+|.. ||+|||..
T Consensus 170 ~~l~~~H~~~GGi-VllttHq~ 190 (209)
T COG4133 170 TALMAAHAAQGGI-VLLTTHQP 190 (209)
T ss_pred HHHHHHHhcCCCE-EEEecCCc
Confidence 6666666677776 99999984
No 295
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.2e-16 Score=169.46 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=101.8
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------cccccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSE 492 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~ 492 (844)
++..++++++|. .+|++++|+||||+|||||+|+|+++... +..|. ++|...
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 456789999999 89999999999999999999999766421 01221 111100
Q ss_pred cc-ccchhHHH--------------------hhhCCchhh----HhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCC
Q 003142 493 YA-KVPWFDSV--------------------FADIGDEQS----LSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 493 ~~-~i~~~~~i--------------------~~~ig~~q~----i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~s 546 (844)
.. ....++.+ +..++.... .......+|+++ +++..+.+++.+|+++||||||+
T Consensus 99 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPts 178 (261)
T PRK14263 99 NPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCS 178 (261)
T ss_pred ccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 00 01111111 111121111 112234567655 55666667899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhcccccee--------eeEEEE
Q 003142 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE--------NACMEF 598 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~--------ng~v~f 598 (844)
|+|+.....+.. ++..+. .+.+ +|++||+.+.. .+|+++..+. +|.+..
T Consensus 179 gLD~~~~~~l~~-~l~~~~-~~~t-ii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~ 236 (261)
T PRK14263 179 ALDPIATRRVEE-LMVELK-KDYT-IALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE 236 (261)
T ss_pred cCCHHHHHHHHH-HHHHHh-cCCe-EEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE
Confidence 999977777754 555555 3666 99999998765 6899888885 677754
No 296
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=1.2e-16 Score=158.29 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=114.4
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh----------------ccccccccccc------cccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----------------KSGLHILSSEY------AKVP 497 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----------------q~G~~vpa~~~------~~i~ 497 (844)
|..-|+..+++. ..|.++.|+|.+|||||||||||..+.... ..|-.+|++.. +.++
T Consensus 17 G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~ 96 (256)
T COG4598 17 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLG 96 (256)
T ss_pred ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhh
Confidence 456799999999 889999999999999999999996543221 12222232110 0011
Q ss_pred h-----------------------------------hHHHhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEE
Q 003142 498 W-----------------------------------FDSVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLL 541 (844)
Q Consensus 498 ~-----------------------------------~~~i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLL 541 (844)
+ ...++...|..+....+...+||++++ .+.+.+++-+|.++|+
T Consensus 97 mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLF 176 (256)
T COG4598 97 MVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLF 176 (256)
T ss_pred HhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEee
Confidence 0 012344455666666666778876655 4555567899999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhccccceeeeEEEEe
Q 003142 542 DEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 599 (844)
Q Consensus 542 DEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~-~a~~~~~v~ng~v~fd 599 (844)
|||||+|||.-...+. .++..|.+.|.| .+++||.+.|+. .+.+++.+.+|.++..
T Consensus 177 DEPTSALDPElVgEVL-kv~~~LAeEgrT-Mv~VTHEM~FAR~Vss~v~fLh~G~iEE~ 233 (256)
T COG4598 177 DEPTSALDPELVGEVL-KVMQDLAEEGRT-MVVVTHEMGFARDVSSHVIFLHQGKIEEE 233 (256)
T ss_pred cCCcccCCHHHHHHHH-HHHHHHHHhCCe-EEEEeeehhHHHhhhhheEEeecceeccc
Confidence 9999999997777765 577889999998 899999999995 8888999999998743
No 297
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.1e-16 Score=173.34 Aligned_cols=156 Identities=14% Similarity=0.167 Sum_probs=102.3
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------cccccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSE 492 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~ 492 (844)
+++.++.+++|+ .+|++++|+|||||||||||++|+++... +..|. ++|...
T Consensus 56 ~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 135 (305)
T PRK14264 56 GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135 (305)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCC
Confidence 345789999999 88999999999999999999999876421 11221 122110
Q ss_pred cc-ccchhHHHh----------------------------------hhCCch----hhHhhhhhhhhHHh-hHHHHHHHh
Q 003142 493 YA-KVPWFDSVF----------------------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQ 532 (844)
Q Consensus 493 ~~-~i~~~~~i~----------------------------------~~ig~~----q~i~~~lstfS~~~-~rl~~il~~ 532 (844)
.. ...+.+.+. ..++.. .........+|+++ +++..+.++
T Consensus 136 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL 215 (305)
T PRK14264 136 NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCL 215 (305)
T ss_pred ccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHH
Confidence 00 001111111 001110 11122334577755 556666778
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccc-cceeeeEEEEe
Q 003142 533 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSN-DFFENACMEFD 599 (844)
Q Consensus 533 a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~-~~v~ng~v~fd 599 (844)
+.+|+||||||||+|||+.....+. .++..+.+ +.+ +|++||+.++. .+|+++ ..+.+|.+..+
T Consensus 216 ~~~p~lLLLDEPtsgLD~~~~~~l~-~~L~~~~~-~~t-iiivtH~~~~i~~~~d~i~~~l~~G~i~~~ 281 (305)
T PRK14264 216 AVDPEVILMDEPASALDPIATSKIE-DLIEELAE-EYT-VVVVTHNMQQAARISDQTAVFLTGGELVEY 281 (305)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHH-HHHHHHhc-CCE-EEEEEcCHHHHHHhcCEEEEEecCCEEEEe
Confidence 9999999999999999997777765 45555655 466 99999998775 688886 45688888654
No 298
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.68 E-value=1.3e-16 Score=206.70 Aligned_cols=155 Identities=19% Similarity=0.186 Sum_probs=112.4
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------ccccccccccc--cccchh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSGLHILSSEY--AKVPWF 499 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~G~~vpa~~~--~~i~~~ 499 (844)
+.+.++++|+ .+|++++|+||||||||||||+|++..... ..| ++|.... ..+...
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG-y~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG-YCPQFDAIDDLLTGR 2030 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE-EEeccccCCCCCCHH
Confidence 5799999999 899999999999999999999997653211 011 2232100 001111
Q ss_pred ---------------------HHHhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 500 ---------------------DSVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 500 ---------------------~~i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
+.++..++..+......+++|++++| +..+++++.+|++|||||||+|+||.....+.
T Consensus 2031 E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~ 2110 (2272)
T TIGR01257 2031 EHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLW 2110 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 11233345554455566788887755 55666789999999999999999997777765
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 558 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 558 ~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
.++..+.+.|.+ ||+|||+++.. .+|+++..+.+|++...+
T Consensus 2111 -~lL~~l~~~g~T-IILtTH~mee~e~lcDrV~IL~~G~i~~~G 2152 (2272)
T TIGR01257 2111 -NTIVSIIREGRA-VVLTSHSMEECEALCTRLAIMVKGAFQCLG 2152 (2272)
T ss_pred -HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 566677777887 99999998776 599999999999997654
No 299
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.4e-16 Score=166.38 Aligned_cols=155 Identities=18% Similarity=0.226 Sum_probs=102.2
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH--h--hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM--M--AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~--~--~q~G~-----------------------~vpa~~~ 493 (844)
++.++.+++|+ .+|++++|+||||+||||||++|+++.- . +..|. ++|. ..
T Consensus 15 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q-~~ 93 (250)
T PRK14266 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQ-KP 93 (250)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEec-CC
Confidence 45689999999 8899999999999999999999987531 1 12221 1111 00
Q ss_pred ccc--chhHHHh----------------------hhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 494 AKV--PWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 494 ~~i--~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
..+ ...+.+. ..++.. .........+|+++ +++..+.+++.+|+++|||||
T Consensus 94 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 173 (250)
T PRK14266 94 NPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173 (250)
T ss_pred ccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 000 1111111 111111 01122234566654 556666778999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
++|+|+.....+.. ++..+.+ +.| +|++||+.+.. .+++++..+.+|++..+.
T Consensus 174 ~~gLD~~~~~~l~~-~l~~~~~-~~t-iii~sh~~~~~~~~~~~i~~l~~G~i~~~g 227 (250)
T PRK14266 174 CSALDPISTTKIED-LIHKLKE-DYT-IVIVTHNMQQATRVSKYTSFFLNGEIIESG 227 (250)
T ss_pred CccCCHHHHHHHHH-HHHHHhc-CCe-EEEEECCHHHHHhhcCEEEEEECCeEEEeC
Confidence 99999977777754 5555554 676 99999998765 577777778899997653
No 300
>PLN03073 ABC transporter F family; Provisional
Probab=99.68 E-value=1.1e-16 Score=193.18 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=104.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc----------ccccccccccc-------------
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSEYAKVP------------- 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~----------~vpa~~~~~i~------------- 497 (844)
++.++.+++|. ..|++++|+||||||||||||+|+++.... .|. +++......+.
T Consensus 521 ~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~-~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~ 599 (718)
T PLN03073 521 GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS-SGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCF 599 (718)
T ss_pred CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-CceEEECCceeEEEEeccccccCCcchhHHHHHHHhc
Confidence 45689999999 889999999999999999999997653221 111 22221100000
Q ss_pred ------hhHHHhhhCCchh-hHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 003142 498 ------WFDSVFADIGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 569 (844)
Q Consensus 498 ------~~~~i~~~ig~~q-~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~ 569 (844)
....++..++... ......+.+|++++ ++..+.+++.+|++|||||||+|||+.....+. +.+.+.+.
T Consensus 600 ~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~----~~L~~~~g 675 (718)
T PLN03073 600 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALI----QGLVLFQG 675 (718)
T ss_pred CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH----HHHHHcCC
Confidence 0112334455543 34556678888665 456666788999999999999999997666654 33444345
Q ss_pred eEEEEEccchhHH-hhhccccceeeeEEE
Q 003142 570 LLTIATTHHGELK-TLKYSNDFFENACME 597 (844)
Q Consensus 570 t~vIitTHd~el~-~~a~~~~~v~ng~v~ 597 (844)
+ ||++|||.++. .+|+++..+.+|.+.
T Consensus 676 t-vIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 676 G-VLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred E-EEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 6 99999998877 589999999898875
No 301
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.68 E-value=1.9e-16 Score=169.28 Aligned_cols=152 Identities=12% Similarity=-0.005 Sum_probs=101.6
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------cccccccccccc--h
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKVP--W 498 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i~--~ 498 (844)
..++.+++|. .+|++++|+||||+|||||||+|+++... ..| .+++. ....++ +
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~G~i~i~g~~i~~~~~~~~~~~i~~v~q-~~~l~~~tv 111 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI-FDGKIVIDGIDISKLPLHTLRSRLSIILQ-DPILFSGSI 111 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC-CCCeEEECCEEhhhCCHHHHhhhEEEECC-CCcccccHH
Confidence 4689999999 89999999999999999999999765321 112 11221 000000 0
Q ss_pred hHH--------------HhhhCCchhhHh-----------hhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 499 FDS--------------VFADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 499 ~~~--------------i~~~ig~~q~i~-----------~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
.+. .+...+....+. .....+|+++ +++..+.+++.+|+++||||||+|+|+..
T Consensus 112 ~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~ 191 (257)
T cd03288 112 RFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT 191 (257)
T ss_pred HHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 000 001111111111 1123567654 56677778899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
...+. .++..+. .+.| +|++||+.+....|+++..+.+|.+..+
T Consensus 192 ~~~l~-~~l~~~~-~~~t-iii~sh~~~~~~~~dri~~l~~G~i~~~ 235 (257)
T cd03288 192 ENILQ-KVVMTAF-ADRT-VVTIAHRVSTILDADLVLVLSRGILVEC 235 (257)
T ss_pred HHHHH-HHHHHhc-CCCE-EEEEecChHHHHhCCEEEEEECCEEEEe
Confidence 66654 4455553 4776 9999999888877999999999998654
No 302
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.9e-16 Score=167.57 Aligned_cols=154 Identities=14% Similarity=0.167 Sum_probs=103.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh-h---cccc-------------------------ccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-A---KSGL-------------------------HILSS 491 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~-~---q~G~-------------------------~vpa~ 491 (844)
++.++.+++|. ..|++++|+|||||||||||++|+++.-. + ..|. ++|.
T Consensus 28 ~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q- 106 (265)
T PRK14252 28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQ- 106 (265)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEcc-
Confidence 45799999999 89999999999999999999999765321 0 1121 1121
Q ss_pred ccccc--chhHHHh----------------------hhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEe
Q 003142 492 EYAKV--PWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLD 542 (844)
Q Consensus 492 ~~~~i--~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLD 542 (844)
....+ .+.+.+. ..++.. +........+|+++ +++..+.+++.+|+++|||
T Consensus 107 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 186 (265)
T PRK14252 107 KPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFD 186 (265)
T ss_pred CCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 00000 1111110 011110 11122234567655 5566666789999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 543 EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 543 EP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|||+|+|+.....+.. ++..+.. +.| +|++||+.+.. .+|+++..+.+|.+...
T Consensus 187 EPt~gLD~~~~~~l~~-~l~~l~~-~~t-iiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 187 EPTSALDPIATASIEE-LISDLKN-KVT-ILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred CCCccCCHHHHHHHHH-HHHHHHh-CCE-EEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999977777654 5556654 566 99999998776 68999999999988644
No 303
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2e-16 Score=169.24 Aligned_cols=155 Identities=16% Similarity=0.191 Sum_probs=101.2
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh----cccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----q~G~-----------------------~vpa~~~ 493 (844)
+..++.+++|+ .+|++++|+||||||||||||+|+++.... ..|. ++|....
T Consensus 19 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (259)
T PRK14260 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98 (259)
T ss_pred CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc
Confidence 45689999999 899999999999999999999998764311 1221 1111000
Q ss_pred -cccchhHHHh----------------------hhCCch----hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 -AKVPWFDSVF----------------------ADIGDE----QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 -~~i~~~~~i~----------------------~~ig~~----q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
......+.+. ..++.. .........+|+++ +++..+.+++.+|+++||||||
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 178 (259)
T PRK14260 99 PFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178 (259)
T ss_pred cCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 0001111111 111111 11122234567655 5566667789999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhcccccee-----eeEEEEe
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE-----NACMEFD 599 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~-----ng~v~fd 599 (844)
+|+|+.....+.. ++..+.+ +.| +|++||+.+.. .+|+++..+. +|.+...
T Consensus 179 ~~LD~~~~~~l~~-~l~~~~~-~~t-iii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 179 SALDPIATMKVEE-LIHSLRS-ELT-IAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred ccCCHHHHHHHHH-HHHHHhc-CCE-EEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999977777654 5555554 566 99999998776 6888888876 4877654
No 304
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.67 E-value=1.4e-16 Score=167.42 Aligned_cols=86 Identities=21% Similarity=0.178 Sum_probs=66.4
Q ss_pred HhhhhhhhhHHhhH-HHHHHHhCCCC--cEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003142 512 LSQSLSTFSGHLKQ-IGNIISQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588 (844)
Q Consensus 512 i~~~lstfS~~~~r-l~~il~~a~~p--~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~ 588 (844)
.....+++|+++++ +..+.+++.+| +++||||||+|+|+.....+.. ++..+.+.|.| +|++||+.++..+|+++
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~-~l~~~~~~g~t-ii~itH~~~~~~~~d~i 208 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIE-TLKRLRDLGNT-VLVVEHDEDTIRAADHV 208 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHhCCCE-EEEEEeCHHHHHhCCEE
Confidence 44556678876654 55555667776 6999999999999988887765 45556777887 99999999888899999
Q ss_pred cce------eeeEEEEe
Q 003142 589 DFF------ENACMEFD 599 (844)
Q Consensus 589 ~~v------~ng~v~fd 599 (844)
..+ .+|.+..+
T Consensus 209 ~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 209 IDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred EEeCCCccccCCEEEec
Confidence 888 77777643
No 305
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.67 E-value=1.6e-16 Score=156.41 Aligned_cols=156 Identities=15% Similarity=0.182 Sum_probs=119.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh-------------------------cccc------ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------------------------KSGL------HIL 489 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-------------------------q~G~------~vp 489 (844)
.-.|+.++++. ..|+.++|+||+||||||||-.++++.-.. +.|+ .+|
T Consensus 22 ~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip 101 (228)
T COG4181 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIP 101 (228)
T ss_pred ceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccc
Confidence 44688899999 888999999999999999999987542110 0111 111
Q ss_pred c---ccccccc-------------hhHHHhhhCCchhhHhhhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 490 S---SEYAKVP-------------WFDSVFADIGDEQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 490 a---~~~~~i~-------------~~~~i~~~ig~~q~i~~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
. -++..+| .....+..+|..+.+..+..++|| +++|++.+.+++..|++|+-||||.+||...
T Consensus 102 ~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~T 181 (228)
T COG4181 102 NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181 (228)
T ss_pred cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhH
Confidence 1 0111111 122356667777777777788887 5677777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
+..++..+...-.+.|.| .+++|||..++.-|++...+.+|.++-
T Consensus 182 g~~iaDLlF~lnre~G~T-lVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 182 GDKIADLLFALNRERGTT-LVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHHHhhhcCce-EEEEeCCHHHHHhhhheeeeecceecc
Confidence 999987777766778887 999999999999999999999999864
No 306
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.3e-16 Score=168.17 Aligned_cols=147 Identities=16% Similarity=0.249 Sum_probs=96.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSEY 493 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~~ 493 (844)
+..++.+++|+ ..|++++|+||||+|||||||+|+++... +..|. +++. ..
T Consensus 22 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q-~~ 100 (264)
T PRK14243 22 SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQ-KP 100 (264)
T ss_pred CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEcc-CC
Confidence 45689999999 88999999999999999999999875321 11221 1111 00
Q ss_pred ccc--chhHHHh--------------------hhCCchh----hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCC
Q 003142 494 AKV--PWFDSVF--------------------ADIGDEQ----SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 494 ~~i--~~~~~i~--------------------~~ig~~q----~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~s 546 (844)
..+ .+.+.+. ..++... ........+|+++ +++..+.+++.+|++|||||||+
T Consensus 101 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 180 (264)
T PRK14243 101 NPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCS 180 (264)
T ss_pred ccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 000 1111111 0111100 1112233467655 55666677899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhcccccee
Q 003142 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE 592 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ 592 (844)
|||+.....+. .++..+.+ +.+ ||++||+.+.. .+|+++..+.
T Consensus 181 ~LD~~~~~~l~-~~L~~~~~-~~t-vi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 181 ALDPISTLRIE-ELMHELKE-QYT-IIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred cCCHHHHHHHH-HHHHHHhc-CCE-EEEEecCHHHHHHhCCEEEEEe
Confidence 99998877775 45556655 466 99999998654 7888888776
No 307
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.67 E-value=1.8e-16 Score=169.56 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=99.6
Q ss_pred cceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccc-----------------c-----------------c
Q 003142 444 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-----------------I-----------------L 489 (844)
Q Consensus 444 ~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~-----------------v-----------------p 489 (844)
.+..++++-.+|++++|+||||||||||||+|+++.. +..|.. + +
T Consensus 15 ~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLK-PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 4777887447889999999999999999999976532 112211 0 0
Q ss_pred cccccccc------------------hhHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 490 SSEYAKVP------------------WFDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 490 a~~~~~i~------------------~~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
. .....+ ....++..++..+........+|+++ +++..+.+++.+|+++||||||+|+|+
T Consensus 94 ~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~ 172 (255)
T cd03236 94 Q-YVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172 (255)
T ss_pred c-hhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 0 000000 01122333444444555566778765 455666677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhccccceeeeEE
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACM 596 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~-~a~~~~~v~ng~v 596 (844)
.....+. .++..+.+.+++ +|++||+.++.. +|+++..+ +|.+
T Consensus 173 ~~~~~l~-~~l~~l~~~~~t-IIiiSHd~~~~~~~ad~i~~l-~~~~ 216 (255)
T cd03236 173 KQRLNAA-RLIRELAEDDNY-VLVVEHDLAVLDYLSDYIHCL-YGEP 216 (255)
T ss_pred HHHHHHH-HHHHHHHhcCCE-EEEEECCHHHHHHhCCEEEEE-CCCC
Confidence 7777775 455667666887 999999988775 78777655 4444
No 308
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.67 E-value=1.1e-16 Score=188.82 Aligned_cols=149 Identities=13% Similarity=0.036 Sum_probs=99.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------cccccccc--cccchhHHHh-----
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEY--AKVPWFDSVF----- 503 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------~~vpa~~~--~~i~~~~~i~----- 503 (844)
++.++.+++|. ..|++++|+||||||||||||+|+++... ..| .++|.... ..+...+.+.
T Consensus 17 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p-~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~ 95 (552)
T TIGR03719 17 KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAE 95 (552)
T ss_pred CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHH
Confidence 45789999999 88999999999999999999999765321 112 12232110 0111111110
Q ss_pred ----------------------------------------------------hhCCchhhHhhhhhhhhHHhh-HHHHHH
Q 003142 504 ----------------------------------------------------ADIGDEQSLSQSLSTFSGHLK-QIGNII 530 (844)
Q Consensus 504 ----------------------------------------------------~~ig~~q~i~~~lstfS~~~~-rl~~il 530 (844)
..++.. ......+++|++++ ++..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkqrv~la~ 174 (552)
T TIGR03719 96 IKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTKLSGGERRRVALCR 174 (552)
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhhcCHHHHHHHHHHH
Confidence 001110 01234567887665 556666
Q ss_pred HhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEE
Q 003142 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 597 (844)
Q Consensus 531 ~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~ 597 (844)
+++.+|++|||||||+|||+.....+.. + +.+.+.+ ||++||+.++. .+|+++..+.+|.+.
T Consensus 175 al~~~p~lLLLDEPt~~LD~~~~~~l~~-~---L~~~~~t-vIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 175 LLLSKPDMLLLDEPTNHLDAESVAWLEQ-H---LQEYPGT-VVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred HHhcCCCEEEEcCCCCCCChHHHHHHHH-H---HHhCCCe-EEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 7789999999999999999976665543 3 3334556 99999998876 588988888888764
No 309
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.67 E-value=1.8e-16 Score=187.05 Aligned_cols=146 Identities=15% Similarity=0.147 Sum_probs=100.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------cccccccc---cccchhH-------
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEY---AKVPWFD------- 500 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------~~vpa~~~---~~i~~~~------- 500 (844)
++.++++++|. ..|++++|+||||||||||||+|+++.... .| .++|.... ......+
T Consensus 334 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~ 412 (552)
T TIGR03719 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD-SGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLD 412 (552)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhcc
Confidence 45789999999 899999999999999999999997653211 11 12332110 0111111
Q ss_pred ------------HHhhhCCchh-hHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 003142 501 ------------SVFADIGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 566 (844)
Q Consensus 501 ------------~i~~~ig~~q-~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~ 566 (844)
.++..++... .....++++|++++ ++..+.+++.+|++|||||||+|||+.....+.. ++..+
T Consensus 413 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~-- 489 (552)
T TIGR03719 413 IIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEE-ALLEF-- 489 (552)
T ss_pred ccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHC--
Confidence 2334445532 34556778888765 4566667799999999999999999977776654 33333
Q ss_pred cCCeEEEEEccchhHH-hhhccccceee
Q 003142 567 SGSLLTIATTHHGELK-TLKYSNDFFEN 593 (844)
Q Consensus 567 ~g~t~vIitTHd~el~-~~a~~~~~v~n 593 (844)
+.+ ||++|||.++. .+|+++..+.+
T Consensus 490 -~~~-viivsHd~~~~~~~~d~i~~l~~ 515 (552)
T TIGR03719 490 -AGC-AVVISHDRWFLDRIATHILAFEG 515 (552)
T ss_pred -CCe-EEEEeCCHHHHHHhCCEEEEEEC
Confidence 346 89999998876 58888877765
No 310
>PRK13409 putative ATPase RIL; Provisional
Probab=99.67 E-value=3.6e-16 Score=185.38 Aligned_cols=150 Identities=18% Similarity=0.068 Sum_probs=105.1
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------cccccccc--cccch---------------
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEY--AKVPW--------------- 498 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------~~vpa~~~--~~i~~--------------- 498 (844)
.+.++++. ..|++++|+||||+|||||||+|+++.... .| .++|+... ...+.
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~-~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~ 432 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD-EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSY 432 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHH
Confidence 46777777 788999999999999999999997653211 11 12332110 00111
Q ss_pred -hHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEE
Q 003142 499 -FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIAT 575 (844)
Q Consensus 499 -~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIit 575 (844)
...++..++..+.....+.++|+++ +++..+.+++.+|+++||||||+|||+.....+.. ++..+.+ .|.+ +|++
T Consensus 433 ~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~t-viiv 510 (590)
T PRK13409 433 YKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAK-AIRRIAEEREAT-ALVV 510 (590)
T ss_pred HHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhCCCE-EEEE
Confidence 1234455666666677778899866 55666667899999999999999999988888765 5555554 5787 9999
Q ss_pred ccchhHH-hhhccccceeeeEEEE
Q 003142 576 THHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 576 THd~el~-~~a~~~~~v~ng~v~f 598 (844)
|||.++. .+|+++..+. +.+..
T Consensus 511 sHD~~~~~~~aDrvivl~-~~~~~ 533 (590)
T PRK13409 511 DHDIYMIDYISDRLMVFE-GEPGK 533 (590)
T ss_pred eCCHHHHHHhCCEEEEEc-Cccee
Confidence 9998877 4788877664 35543
No 311
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.66 E-value=5.8e-16 Score=150.98 Aligned_cols=161 Identities=20% Similarity=0.235 Sum_probs=111.8
Q ss_pred cCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccccccccc----------------ccc-----
Q 003142 440 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYA----------------KVP----- 497 (844)
Q Consensus 440 ~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~----------------~i~----- 497 (844)
.|...++.||+++ +.|+.++++||+|+|||||||++.++... ..|-...+.... .++
T Consensus 12 yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p-~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqq 90 (242)
T COG4161 12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90 (242)
T ss_pred cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC-CCCeEEecccccccccCccHHHHHHHHHhhhhhhhh
Confidence 3567789999999 88999999999999999999999655432 223211110000 000
Q ss_pred --------hhH----------------------HHhhhCCchhhHhhhhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCC
Q 003142 498 --------WFD----------------------SVFADIGDEQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 498 --------~~~----------------------~i~~~ig~~q~i~~~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~s 546 (844)
+.. .++.++...+..+...-.+||+ .+|++.+.+++.+|.+||+||||+
T Consensus 91 y~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdepta 170 (242)
T COG4161 91 YNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170 (242)
T ss_pred hccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCccc
Confidence 001 1122222222233333345665 456666677899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEecccc
Q 003142 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEVKL 603 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~~~l 603 (844)
+|||.-...+ ..|+++|...|.| -+++||..+++ ..|.++..+++|++...+..-
T Consensus 171 aldpeitaqv-v~iikel~~tgit-qvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 171 ALDPEITAQI-VSIIKELAETGIT-QVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred ccCHHHHHHH-HHHHHHHHhcCce-EEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999665555 5788999999998 89999999888 589999999999997655433
No 312
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.66 E-value=2.2e-16 Score=186.51 Aligned_cols=150 Identities=16% Similarity=0.133 Sum_probs=101.9
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------ccccccc-c--cccchhH------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSE-Y--AKVPWFD------ 500 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------~~vpa~~-~--~~i~~~~------ 500 (844)
+++.++.+++|+ ..|++++|+||||||||||||+|+++.... .| .++|... . ..+...+
T Consensus 335 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~-~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~ 413 (556)
T PRK11819 335 GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD-SGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGL 413 (556)
T ss_pred CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhhc
Confidence 345789999999 889999999999999999999997653211 11 1233311 0 0111111
Q ss_pred -------------HHhhhCCchh-hHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 003142 501 -------------SVFADIGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565 (844)
Q Consensus 501 -------------~i~~~ig~~q-~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~ 565 (844)
.++..++... ......+++|++++ ++..+.+++.+|++|||||||+|||+.....+.. ++..+
T Consensus 414 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~~~- 491 (556)
T PRK11819 414 DIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEE-ALLEF- 491 (556)
T ss_pred ccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH-HHHhC-
Confidence 1233344432 34556678888765 5566667789999999999999999977777654 33333
Q ss_pred hcCCeEEEEEccchhHH-hhhccccceee-eEE
Q 003142 566 ESGSLLTIATTHHGELK-TLKYSNDFFEN-ACM 596 (844)
Q Consensus 566 ~~g~t~vIitTHd~el~-~~a~~~~~v~n-g~v 596 (844)
+.+ ||++|||.++. .+|+++..+.+ |.+
T Consensus 492 --~~t-vi~vtHd~~~~~~~~d~i~~l~~~g~~ 521 (556)
T PRK11819 492 --PGC-AVVISHDRWFLDRIATHILAFEGDSQV 521 (556)
T ss_pred --CCe-EEEEECCHHHHHHhCCEEEEEECCCeE
Confidence 346 89999998876 58888877765 444
No 313
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.66 E-value=1.8e-16 Score=187.30 Aligned_cols=149 Identities=13% Similarity=0.045 Sum_probs=100.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc----------ccccccc--cccchhHHHh-----
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----------HILSSEY--AKVPWFDSVF----- 503 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~----------~vpa~~~--~~i~~~~~i~----- 503 (844)
++.++.+++|+ ..|++++|+||||||||||||+|+++... ..|. ++|.... ..+...+.+.
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p-~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~ 97 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAE 97 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHH
Confidence 46799999999 89999999999999999999999765322 1121 2333110 0111111111
Q ss_pred ----------------------------------------------------hhCCchhhHhhhhhhhhHHh-hHHHHHH
Q 003142 504 ----------------------------------------------------ADIGDEQSLSQSLSTFSGHL-KQIGNII 530 (844)
Q Consensus 504 ----------------------------------------------------~~ig~~q~i~~~lstfS~~~-~rl~~il 530 (844)
..+|.. ......+.+|+++ +++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSgGqkqrv~la~ 176 (556)
T PRK11819 98 VKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSGGERRRVALCR 176 (556)
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCHHHHHHHHHHH
Confidence 011111 1233456788876 5566666
Q ss_pred HhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEE
Q 003142 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACME 597 (844)
Q Consensus 531 ~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~ 597 (844)
+++.+|++|||||||+|||+.....+. .++.. .+.| ||++||+.++. .+|+++..+.+|.+.
T Consensus 177 al~~~p~vlLLDEPt~~LD~~~~~~l~-~~L~~---~~~t-viiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 177 LLLEKPDMLLLDEPTNHLDAESVAWLE-QFLHD---YPGT-VVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred HHhCCCCEEEEcCCCCcCChHHHHHHH-HHHHh---CCCe-EEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 789999999999999999996666554 33333 3456 99999998876 588888888888764
No 314
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2e-16 Score=162.76 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=106.1
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH----------H------------hhcccccc----ccc-ccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV----------M------------MAKSGLHI----LSS-EYA 494 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~----------~------------~~q~G~~v----pa~-~~~ 494 (844)
+.++.++++. ..|++.+|+||||||||||.++|.+.. + -+..|+++ |.. ++.
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 5899999999 999999999999999999999996431 0 12233332 210 001
Q ss_pred ccchh----------------------HHHhhhCCchh-hHhhhh-hhhhHHhhHHHHHHH-hCCCCcEEEEecCCCCCC
Q 003142 495 KVPWF----------------------DSVFADIGDEQ-SLSQSL-STFSGHLKQIGNIIS-QSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 495 ~i~~~----------------------~~i~~~ig~~q-~i~~~l-stfS~~~~rl~~il~-~a~~p~LLLLDEP~sGlD 549 (844)
.+..| ......++... .+..++ -.|||+.++...++. ++.+|+++|||||-||+|
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 11111 11122233322 222222 248887766666665 478999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhh--ccccceeeeEEEEec
Q 003142 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK--YSNDFFENACMEFDE 600 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a--~~~~~v~ng~v~fd~ 600 (844)
... ..+....++.+++.|.+ ++++|||..+..|. +.+..+.+|++...+
T Consensus 177 Ida-lk~V~~~i~~lr~~~~~-~liITHy~rll~~i~pD~vhvl~~GrIv~sG 227 (251)
T COG0396 177 IDA-LKIVAEGINALREEGRG-VLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227 (251)
T ss_pred HHH-HHHHHHHHHHHhcCCCe-EEEEecHHHHHhhcCCCEEEEEECCEEEecC
Confidence 944 44555677888999987 99999999999876 777778888887544
No 315
>PLN03073 ABC transporter F family; Provisional
Probab=99.66 E-value=2.2e-15 Score=181.96 Aligned_cols=80 Identities=19% Similarity=0.101 Sum_probs=61.2
Q ss_pred hhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccc
Q 003142 513 SQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDF 590 (844)
Q Consensus 513 ~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~ 590 (844)
.....++|++++ ++..+.+++.+|++|||||||+|||+.....+. +.|.+.+.| +|+||||.++. .+|+++..
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~----~~L~~~~~t-viivsHd~~~l~~~~d~i~~ 413 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLE----TYLLKWPKT-FIVVSHAREFLNTVVTDILH 413 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH----HHHHHcCCE-EEEEECCHHHHHHhCCEEEE
Confidence 345677888765 455566778999999999999999996655543 444445776 99999998876 57999988
Q ss_pred eeeeEEE
Q 003142 591 FENACME 597 (844)
Q Consensus 591 v~ng~v~ 597 (844)
+.+|.+.
T Consensus 414 l~~g~i~ 420 (718)
T PLN03073 414 LHGQKLV 420 (718)
T ss_pred EECCEEE
Confidence 8888764
No 316
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.8e-16 Score=171.52 Aligned_cols=157 Identities=17% Similarity=0.252 Sum_probs=106.1
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hcccc-----------------------cccccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGL-----------------------HILSSE 492 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~-----------------------~vpa~~ 492 (844)
+...++++++|+ .+|++++|+|||||||||||++|.++... ...|. ++|...
T Consensus 93 ~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 345799999999 89999999999999999999999765421 11121 122210
Q ss_pred cc-ccchhHHHh----------------------hhCCc----hhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 493 YA-KVPWFDSVF----------------------ADIGD----EQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 493 ~~-~i~~~~~i~----------------------~~ig~----~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
.. .....+++. ...+. ...+......+|+++ +++..+.+++.+|++||||||
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEP 252 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEP 252 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 00 001111111 11111 112233445677655 556666778999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
|+|+|+.....+. .++..+.+ ++| +|++||+++.. .+|+++..+.+|.+...+
T Consensus 253 ts~LD~~~~~~i~-~~i~~l~~-~~T-ii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 253 TSALDPIATAKIE-ELILELKK-KYS-IIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred cccCCHHHHHHHH-HHHHHHhc-CCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999997777765 45555654 576 99999998876 579999999999987543
No 317
>PLN03211 ABC transporter G-25; Provisional
Probab=99.65 E-value=3.6e-16 Score=187.60 Aligned_cols=158 Identities=16% Similarity=0.188 Sum_probs=108.7
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh-ccc-----------------cccccccc--cccchh
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KSG-----------------LHILSSEY--AKVPWF 499 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-q~G-----------------~~vpa~~~--~~i~~~ 499 (844)
+++.+++++++. .+|++++|+|||||||||||++|++..... ..| .+++.... ..+.+.
T Consensus 79 ~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 158 (659)
T PLN03211 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVR 158 (659)
T ss_pred CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHH
Confidence 356799999999 899999999999999999999997653211 011 12222100 001111
Q ss_pred HH------------------------HhhhCCchhhH-----hhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCC
Q 003142 500 DS------------------------VFADIGDEQSL-----SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 500 ~~------------------------i~~~ig~~q~i-----~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlD 549 (844)
+. ++..+|..+.. ......+|+++ +|+..+.+++.+|+++||||||+|||
T Consensus 159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD 238 (659)
T PLN03211 159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238 (659)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcC
Confidence 11 12222222111 01234577655 56666778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEccchh--HHhhhccccceeeeEEEEec
Q 003142 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGE--LKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~~g~t~vIitTHd~e--l~~~a~~~~~v~ng~v~fd~ 600 (844)
+.....+. .++..+.+.|.| ||+|||++. +..++|++..+.+|++.+.+
T Consensus 239 ~~~~~~l~-~~L~~l~~~g~T-vI~~sH~~~~~i~~~~D~iilL~~G~iv~~G 289 (659)
T PLN03211 239 ATAAYRLV-LTLGSLAQKGKT-IVTSMHQPSSRVYQMFDSVLVLSEGRCLFFG 289 (659)
T ss_pred HHHHHHHH-HHHHHHHhCCCE-EEEEecCCCHHHHHhhceEEEecCCcEEEEC
Confidence 97777775 456667777887 999999975 46899999999999998764
No 318
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.65 E-value=3.9e-16 Score=202.32 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=112.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-------------------cccccccccc--cccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------------------SGLHILSSEY--AKVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-------------------~G~~vpa~~~--~~i~~~ 499 (844)
++.+.++++++ ..|++++|+||||||||||||+|+++..... .-.++|+... ..+...
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 46799999999 8999999999999999999999976532110 0012222100 001111
Q ss_pred ---------------------HHHhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 500 ---------------------DSVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 500 ---------------------~~i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
..++..+|..+......+++|++++| +..+.+++.+|++|||||||+|+||.....+.
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~ 1101 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIW 1101 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence 12334455555555566788887755 55566789999999999999999998887775
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 558 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 558 ~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
.++..+. .|.+ ||+|||+++.+ .+|+++..+.+|.+...+
T Consensus 1102 -~lL~~l~-~g~T-IIltTHdmdea~~laDrI~iL~~GkL~~~G 1142 (2272)
T TIGR01257 1102 -DLLLKYR-SGRT-IIMSTHHMDEADLLGDRIAIISQGRLYCSG 1142 (2272)
T ss_pred -HHHHHHh-CCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 5666665 5787 99999998877 589999999999987653
No 319
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=3.7e-16 Score=156.82 Aligned_cols=148 Identities=24% Similarity=0.309 Sum_probs=107.5
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcc-----cccc--ccc-------cccccchh--------
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-----GLHI--LSS-------EYAKVPWF-------- 499 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~-----G~~v--pa~-------~~~~i~~~-------- 499 (844)
..++.+++++ .+|+.++++||+||||||||++++++.-..+. |..+ |.. ...-++|.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvaf 97 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAF 97 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHH
Confidence 4588999999 88999999999999999999999876544321 1111 111 11122221
Q ss_pred ----------------HHHhhhCCchhhHhhhhhhhhHHhhHHHHH-HHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHH
Q 003142 500 ----------------DSVFADIGDEQSLSQSLSTFSGHLKQIGNI-ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 562 (844)
Q Consensus 500 ----------------~~i~~~ig~~q~i~~~lstfS~~~~rl~~i-l~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile 562 (844)
.+++...|.++.-.+.+..+||+|++...+ .+++-+|++||||||++++|...+..+-..+++
T Consensus 98 gL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLld 177 (259)
T COG4525 98 GLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177 (259)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHH
Confidence 233444555555566677789988765554 567899999999999999999999998888888
Q ss_pred HHHhcCCeEEEEEccchhHHh-hhccccce
Q 003142 563 AFAESGSLLTIATTHHGELKT-LKYSNDFF 591 (844)
Q Consensus 563 ~L~~~g~t~vIitTHd~el~~-~a~~~~~v 591 (844)
.....|.. ++++||+.+.+- +|++.+.+
T Consensus 178 lw~~tgk~-~lliTH~ieEAlflatrLvvl 206 (259)
T COG4525 178 LWQETGKQ-VLLITHDIEEALFLATRLVVL 206 (259)
T ss_pred HHHHhCCe-EEEEeccHHHHHhhhheeEEe
Confidence 88888997 999999988875 45544433
No 320
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.65 E-value=6e-16 Score=177.70 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=110.9
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh---ccc-------------------------ccccccccc
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA---KSG-------------------------LHILSSEYA 494 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~---q~G-------------------------~~vpa~~~~ 494 (844)
.+..|+||+ .+|++++|+|.+||||||+.++|.++.-.. ..| .++++....
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 589999999 999999999999999999999984432111 001 112221111
Q ss_pred ccc----h----------------------hHHHhhhCCchhhHhh--hhhhhhHHhhH-HHHHHHhCCCCcEEEEecCC
Q 003142 495 KVP----W----------------------FDSVFADIGDEQSLSQ--SLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 495 ~i~----~----------------------~~~i~~~ig~~q~i~~--~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~ 545 (844)
.+. + ..+++..+|..+.... +...|||+|++ +..+++++.+|+|||+||||
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPT 182 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCc
Confidence 110 0 0123445555554444 67789998855 55556789999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
++||+.....+...|.+...+.|.+ +|++|||+.+. .+||++..+.+|.+...
T Consensus 183 TaLDvt~q~qIL~llk~l~~e~g~a-~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 183 TALDVTTQAQILDLLKDLQRELGMA-VLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred cccCHHHHHHHHHHHHHHHHHcCcE-EEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 9999988888775554444466876 99999999988 59999999999999654
No 321
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.64 E-value=5.4e-16 Score=171.59 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=69.4
Q ss_pred CCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-
Q 003142 506 IGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELK- 582 (844)
Q Consensus 506 ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~-~~g~t~vIitTHd~el~- 582 (844)
++..........++|+++ +++..+.+++.+|+++||||||+|||+.....+...+ ..+. +.|.| +|++||+.+..
T Consensus 88 ~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l-~~l~~~~g~t-iiivTHd~~e~~ 165 (325)
T TIGR01187 88 VQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL-KTIQEQLGIT-FVFVTHDQEEAM 165 (325)
T ss_pred cCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH-HHHHHhcCCE-EEEEeCCHHHHH
Confidence 344333444556788766 5566666789999999999999999998877776544 4454 45887 99999998765
Q ss_pred hhhccccceeeeEEEEe
Q 003142 583 TLKYSNDFFENACMEFD 599 (844)
Q Consensus 583 ~~a~~~~~v~ng~v~fd 599 (844)
.+|+++..+.+|++...
T Consensus 166 ~~~d~i~vl~~G~i~~~ 182 (325)
T TIGR01187 166 TMSDRIAIMRKGKIAQI 182 (325)
T ss_pred HhCCEEEEEECCEEEEE
Confidence 68999999999998643
No 322
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.64 E-value=1.3e-15 Score=183.04 Aligned_cols=156 Identities=14% Similarity=0.150 Sum_probs=111.0
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh------------------------ccccccccccc--cc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA------------------------KSGLHILSSEY--AK 495 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~------------------------q~G~~vpa~~~--~~ 495 (844)
..++.+++|+ .+|++++|+||||+|||||||+|+++.... +...+++.... ..
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 4689999999 899999999999999999999997653211 01112222110 00
Q ss_pred cchhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 496 VPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 496 i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
....+ .++..++....+......+|+++ +++..+.+++.+|+++|||||++|||+...
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180 (648)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 11111 12223344444445556778765 556666678999999999999999999777
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 554 TALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 554 ~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
..+. .+++.+.+.|.+ +|++||+.++...|+++..+.+|++..+.
T Consensus 181 ~~l~-~ll~~l~~~g~t-ilivsH~~~~~~~~d~i~~l~~G~i~~~g 225 (648)
T PRK10535 181 EEVM-AILHQLRDRGHT-VIIVTHDPQVAAQAERVIEIRDGEIVRNP 225 (648)
T ss_pred HHHH-HHHHHHHhcCCE-EEEECCCHHHHHhCCEEEEEECCEEEeec
Confidence 7765 556667767887 99999999988889999999999997654
No 323
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.1e-15 Score=174.45 Aligned_cols=157 Identities=17% Similarity=0.148 Sum_probs=114.5
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccc--------cccc-
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGL--------HILS- 490 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~--------~vpa- 490 (844)
++-.++++++|. .+|++++|+|.||+|||||+|+|+++..... .|. .+|.
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~L 98 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNL 98 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCc
Confidence 456789999999 9999999999999999999999976532110 111 0110
Q ss_pred ---------ccccc-cchh---------HHHhhhCCchhhHhhhhhhhhHHhhHHHHHHH-hCCCCcEEEEecCCCCCCH
Q 003142 491 ---------SEYAK-VPWF---------DSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS-QSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 491 ---------~~~~~-i~~~---------~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~-~a~~p~LLLLDEP~sGlDp 550 (844)
.+... .+++ ..++..++..........++|...+++..|+. +..++.+|||||||+.|+.
T Consensus 99 sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~ 178 (500)
T COG1129 99 SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTV 178 (500)
T ss_pred cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 00000 1111 12344455533356667788887777777664 5678899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccch-hHHhhhccccceeeeEEEEe
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHG-ELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~-el~~~a~~~~~v~ng~v~fd 599 (844)
.+...+. .+++.|+++|.+ +|++||.+ ++..+||++..+.+|.+.-+
T Consensus 179 ~E~~~Lf-~~ir~Lk~~Gv~-ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 179 KETERLF-DLIRRLKAQGVA-IIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHHHHH-HHHHHHHhCCCE-EEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 9999986 577889999998 99999986 55689999999999998643
No 324
>PRK13409 putative ATPase RIL; Provisional
Probab=99.64 E-value=7.9e-16 Score=182.53 Aligned_cols=146 Identities=19% Similarity=0.189 Sum_probs=100.9
Q ss_pred ccceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhcccccc----------------------------------
Q 003142 443 HPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI---------------------------------- 488 (844)
Q Consensus 443 ~~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~v---------------------------------- 488 (844)
.+++.+++.-.+|++++|+||||+|||||||+|+++... ..|...
T Consensus 87 ~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p-~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 87 GFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIP-NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred ceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccC-CCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 468888883388999999999999999999999764321 112110
Q ss_pred ccccccccc------------------hhHHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCC
Q 003142 489 LSSEYAKVP------------------WFDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 489 pa~~~~~i~------------------~~~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlD 549 (844)
|+ .....+ ..+.++..++.........+++|++++ ++..+.+++.+|+++||||||+|||
T Consensus 166 ~q-~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD 244 (590)
T PRK13409 166 PQ-YVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244 (590)
T ss_pred cc-chhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 10 000000 011233445555555667778888665 5556667789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceee
Q 003142 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 593 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~n 593 (844)
+.....+. .++..+.+ |.+ ||++||+.++. .+++++..+.+
T Consensus 245 ~~~~~~l~-~~i~~l~~-g~t-vIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 245 IRQRLNVA-RLIRELAE-GKY-VLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred HHHHHHHH-HHHHHHHC-CCE-EEEEeCCHHHHHHhCCEEEEEeC
Confidence 98888776 45666777 887 99999998776 57777765543
No 325
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.63 E-value=1e-15 Score=163.26 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=114.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh-------------------------------ccccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------------------------------KSGLHIL 489 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-------------------------------q~G~~vp 489 (844)
-..-.++++|+ ..|+|++|+|=+|||||||+|++..+.-.. |.-...|
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 34557889999 899999999999999999999995332110 1000111
Q ss_pred cc---cccccc-------------hhHHHhhhCCchhhHhhhhhhhhHHhhHH-HHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 490 SS---EYAKVP-------------WFDSVFADIGDEQSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 490 a~---~~~~i~-------------~~~~i~~~ig~~q~i~~~lstfS~~~~rl-~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
-. ++..++ .....+...|..+.-..+...+||+|++. ..+.+++.+|++||+|||||+|||.-
T Consensus 120 hrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLI 199 (386)
T COG4175 120 HRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLI 199 (386)
T ss_pred chhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHH
Confidence 00 000000 01234556677777777888899998664 55567899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
+..+-..+++.-.+-+.| |+|+|||.+.+ .+.+++..+.+|.+.-
T Consensus 200 R~~mQdeLl~Lq~~l~KT-IvFitHDLdEAlriG~rIaimkdG~ivQ 245 (386)
T COG4175 200 RTEMQDELLELQAKLKKT-IVFITHDLDEALRIGDRIAIMKDGEIVQ 245 (386)
T ss_pred HHHHHHHHHHHHHHhCCe-EEEEecCHHHHHhccceEEEecCCeEEE
Confidence 999888888776677887 99999998766 7999999999999864
No 326
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.63 E-value=1.7e-15 Score=178.59 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=106.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------ccccccccc----
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAK---- 495 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~~~~~---- 495 (844)
+.++++++++. ++|+.++|+||||||||||+|+|+++.- +..|. ++|+ +...
T Consensus 335 ~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q-~~~lf~~t 412 (547)
T PRK10522 335 NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVTAEQPEDYRKLFSAVFT-DFHLFDQL 412 (547)
T ss_pred CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCCCCHHHHhhheEEEec-ChhHHHHh
Confidence 45689999999 8999999999999999999999965421 11121 1221 0000
Q ss_pred c---------chhHHHhhhCCchhhHhhh-----hhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHH
Q 003142 496 V---------PWFDSVFADIGDEQSLSQS-----LSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560 (844)
Q Consensus 496 i---------~~~~~i~~~ig~~q~i~~~-----lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~I 560 (844)
+ .........++....+... -..+|++ .+|+..+.+++.+|+++||||||+|+|+.....+...+
T Consensus 413 i~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l 492 (547)
T PRK10522 413 LGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL 492 (547)
T ss_pred hccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 0 0001112223332222111 1256765 46677777889999999999999999998877776666
Q ss_pred HHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 561 le~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
.+.+...+.| +|++||+.+....||++..+.+|++...
T Consensus 493 ~~~~~~~~~t-vi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 493 LPLLQEMGKT-IFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHhCCCE-EEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 5555545787 9999999998899999999999998643
No 327
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.62 E-value=1.6e-15 Score=156.38 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=85.1
Q ss_pred EEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------cccc------------ccccccccccc---
Q 003142 448 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------KSGL------------HILSSEYAKVP--- 497 (844)
Q Consensus 448 disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------q~G~------------~vpa~~~~~i~--- 497 (844)
+++++ .+| +++|+||||+||||||++|+++.... ..|. +++......++
T Consensus 15 ~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~ 93 (197)
T cd03278 15 KTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIIS 93 (197)
T ss_pred CeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEe
Confidence 44555 456 89999999999999999997553111 0010 11110000000
Q ss_pred --hhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHH-hC----CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe
Q 003142 498 --WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS-QS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL 570 (844)
Q Consensus 498 --~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~-~a----~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t 570 (844)
...+++.. ..........+|+++++...+.. ++ .+|+++|||||++|+|+.....+.. ++..+.+ +.+
T Consensus 94 ~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~-~l~~~~~-~~t 168 (197)
T cd03278 94 QGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR-LLKEFSK-ETQ 168 (197)
T ss_pred hhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH-HHHHhcc-CCE
Confidence 01112222 12233455678887766554443 32 5779999999999999987777764 5555554 676
Q ss_pred EEEEEccchhHHhhhccccce
Q 003142 571 LTIATTHHGELKTLKYSNDFF 591 (844)
Q Consensus 571 ~vIitTHd~el~~~a~~~~~v 591 (844)
||++||+.++..+|+++..+
T Consensus 169 -iIiitH~~~~~~~~d~v~~~ 188 (197)
T cd03278 169 -FIVITHRKGTMEAADRLYGV 188 (197)
T ss_pred -EEEEECCHHHHhhcceEEEE
Confidence 99999999888788776655
No 328
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.62 E-value=1.1e-15 Score=180.23 Aligned_cols=154 Identities=18% Similarity=0.131 Sum_probs=104.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccccc--c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i--~ 497 (844)
++.+++++++. ++|+.++|+||||||||||+|+|++.... ..| .++|+. ...+ .
T Consensus 330 ~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~-~~lf~~t 407 (544)
T TIGR01842 330 KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP-TSGSVRLDGADLKQWDRETFGKHIGYLPQD-VELFPGT 407 (544)
T ss_pred CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEehhhCCHHHHhhheEEecCC-ccccccc
Confidence 45789999999 88999999999999999999999654321 112 122221 0000 1
Q ss_pred hhHHHh---------------hhCCchhhH-----------hhhhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 498 WFDSVF---------------ADIGDEQSL-----------SQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 498 ~~~~i~---------------~~ig~~q~i-----------~~~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
+.+++. ...+..+.+ ...-..+|++ .+|+..+.+++.+|+++||||||+|+|+
T Consensus 408 i~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~ 487 (544)
T TIGR01842 408 VAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE 487 (544)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCH
Confidence 111111 001111111 1122346664 5677777888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
.....+.. .+..+...+.| +|++||+......||++..+.+|++...
T Consensus 488 ~~~~~i~~-~l~~~~~~~~t-vi~ith~~~~~~~~d~i~~l~~G~i~~~ 534 (544)
T TIGR01842 488 EGEQALAN-AIKALKARGIT-VVVITHRPSLLGCVDKILVLQDGRIARF 534 (544)
T ss_pred HHHHHHHH-HHHHHhhCCCE-EEEEeCCHHHHHhCCEEEEEECCEEEee
Confidence 77776654 44455545777 9999999988889999999999988643
No 329
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.62 E-value=1.4e-15 Score=181.73 Aligned_cols=159 Identities=17% Similarity=0.225 Sum_probs=110.7
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--ccc------------------cccccccc--cccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--KSG------------------LHILSSEY--AKVP 497 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--q~G------------------~~vpa~~~--~~i~ 497 (844)
+++.+++++++. .+|++++|+|||||||||||++|++..... ..| .++|.... ..+.
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 457899999999 999999999999999999999997643211 011 12222110 0011
Q ss_pred h------------------------hHHHhhhCCchhhHhhhh------hhhhHH-hhHHHHHHHhCCCCcEEEEecCCC
Q 003142 498 W------------------------FDSVFADIGDEQSLSQSL------STFSGH-LKQIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 498 ~------------------------~~~i~~~ig~~q~i~~~l------stfS~~-~~rl~~il~~a~~p~LLLLDEP~s 546 (844)
+ .+.++..+|..+.....+ ..+|++ .+|+..+.+++.+|+++||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 1 122233333332212222 246664 566777778899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccch--hHHhhhccccceeeeEEEEecc
Q 003142 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHG--ELKTLKYSNDFFENACMEFDEV 601 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~--el~~~a~~~~~v~ng~v~fd~~ 601 (844)
|||+.....+.. +++.+.+.|.| +|+|||++ ++..++|++..+.+|++.+.+.
T Consensus 196 gLD~~~~~~l~~-~L~~l~~~g~t-vi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~ 250 (617)
T TIGR00955 196 GLDSFMAYSVVQ-VLKGLAQKGKT-IICTIHQPSSELFELFDKIILMAEGRVAYLGS 250 (617)
T ss_pred chhHHHHHHHHH-HHHHHHhCCCE-EEEEeCCCCHHHHHHhceEEEeeCCeEEEECC
Confidence 999988887765 55667777887 99999996 4678999999999999988653
No 330
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.62 E-value=2.1e-15 Score=162.65 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=107.8
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh---h-cccc-------------------------cccccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM---A-KSGL-------------------------HILSSE 492 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~---~-q~G~-------------------------~vpa~~ 492 (844)
..+.++++|+ ..|++++|+|.+||||||+.++|.++.-. . ..|. ++++..
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 3588999999 89999999999999999999998654321 0 0111 111110
Q ss_pred cccc----chhH-----------------------HHhhhCCchh---hHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEE
Q 003142 493 YAKV----PWFD-----------------------SVFADIGDEQ---SLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLL 541 (844)
Q Consensus 493 ~~~i----~~~~-----------------------~i~~~ig~~q---~i~~~lstfS~~~~r-l~~il~~a~~p~LLLL 541 (844)
...+ .+-+ .++..+|..+ .+..+...|||+|++ +..+++++.+|+|||.
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIA 177 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEe
Confidence 0000 0000 1122233322 334455678998855 5555678999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 542 DEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 542 DEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
||||++||......+. .+++.+.+ .|.+ +|++|||+.++ .+||++..+..|.+....
T Consensus 178 DEPTTALDvt~QaqIl-~Ll~~l~~e~~~a-iilITHDl~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 178 DEPTTALDVTVQAQIL-DLLKELQREKGTA-LILITHDLGVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred CCCcchhhHHHHHHHH-HHHHHHHHhcCCE-EEEEeCCHHHHHHhcceEEEEECcEEEEeC
Confidence 9999999998877776 56666665 6776 99999999876 699999999999997543
No 331
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=1.7e-15 Score=154.19 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=112.2
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc-cc-----------------------cc-cccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-HI-----------------------LS-SEYA 494 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~-~v-----------------------pa-~~~~ 494 (844)
..+.++++++++ ..|+++.|+|.||+||||||++|++-..+.. |- .+ |. ....
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~-G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS-GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCC-ceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 356899999999 8899999999999999999999965322211 10 00 00 0000
Q ss_pred ccc---------------------------hhHHHhh--hCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecC
Q 003142 495 KVP---------------------------WFDSVFA--DIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 495 ~i~---------------------------~~~~i~~--~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP 544 (844)
.+. +|..-+. ..|.+..+...+..|||++++ +..+++.+.+|.++||||=
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 111 1111121 235566666777778887765 5666677999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEecc
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 601 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~~ 601 (844)
|++|||.....++..-.+...+.+.| .+++||+++-+ .|.++.+.+.+|.+..|..
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klT-tlMVTHnm~~Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLT-TLMVTHNMEDALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCc-eEEEeccHHHHHhhCCeEEEEeCCeEEEEcc
Confidence 99999977777765444444455666 89999998766 7999999999999998753
No 332
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.61 E-value=2.3e-15 Score=179.00 Aligned_cols=153 Identities=12% Similarity=0.107 Sum_probs=103.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccccccccccccc--ch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYAKV--PW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~~vpa~~~~~i--~~ 498 (844)
++.+.+++++. .+|+.++|+||||||||||+|+|.++.-..+ .-.++|+.. .-+ ++
T Consensus 347 ~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~~Ti 425 (588)
T PRK13657 347 SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA-GLFNRSI 425 (588)
T ss_pred CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCc-ccccccH
Confidence 35699999999 8999999999999999999999965432211 111233211 000 01
Q ss_pred hHHH---------------hhhCCchhhHh-----------hhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 499 FDSV---------------FADIGDEQSLS-----------QSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 499 ~~~i---------------~~~ig~~q~i~-----------~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
.+++ ....+..+.+. .+-..+|| +.||+..+.+++.+|+++||||||+++|+.
T Consensus 426 ~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~ 505 (588)
T PRK13657 426 EDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505 (588)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 1111 11112222111 11123666 557778888889999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
....+...+. .+. .++| +|++||+......||++..+.+|++..
T Consensus 506 t~~~i~~~l~-~~~-~~~t-vIiitHr~~~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 506 TEAKVKAALD-ELM-KGRT-TFIIAHRLSTVRNADRILVFDNGRVVE 549 (588)
T ss_pred HHHHHHHHHH-HHh-cCCE-EEEEEecHHHHHhCCEEEEEECCEEEE
Confidence 7777655443 333 3676 999999999999999999999998863
No 333
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.61 E-value=2.3e-15 Score=178.99 Aligned_cols=153 Identities=15% Similarity=0.072 Sum_probs=105.0
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------cccccccc-ccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYA-KVP 497 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~~~~-~i~ 497 (844)
++++|+++++|. ++|+.++|+||||||||||+++|.++. ++.|. ++|+...- .-+
T Consensus 361 ~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~T 438 (588)
T PRK11174 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGT 438 (588)
T ss_pred CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcC
Confidence 346799999999 899999999999999999999997654 23332 22221000 000
Q ss_pred hhHHH---------------hhhCCchhhHh-----------hhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 498 WFDSV---------------FADIGDEQSLS-----------QSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 498 ~~~~i---------------~~~ig~~q~i~-----------~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
+.+++ ....+..+.+. ..-..+|| +.||+..+.+++.+|+++|||||||++|+
T Consensus 439 I~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~ 518 (588)
T PRK11174 439 LRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDA 518 (588)
T ss_pred HHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 11111 11112122111 11123666 55778888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
.....+...+ ..+. ++.| +|++||.......||++..+.+|++..
T Consensus 519 ~te~~i~~~l-~~~~-~~~T-vIiItHrl~~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 519 HSEQLVMQAL-NAAS-RRQT-TLMVTHQLEDLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred HHHHHHHHHH-HHHh-CCCE-EEEEecChHHHHhCCEEEEEeCCeEee
Confidence 7777776544 3433 4676 999999999999999999999998863
No 334
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.61 E-value=2.7e-15 Score=177.36 Aligned_cols=155 Identities=16% Similarity=0.133 Sum_probs=106.5
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------ccccccc---cccc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEY---AKVP 497 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~~~---~~i~ 497 (844)
+++++++++. ++|++++|+||||||||||+++|+++... +.|. ++++... ..+.
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~ 433 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP-QEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIG 433 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhh
Confidence 3689999999 89999999999999999999999654221 1121 1111000 0000
Q ss_pred ----------hhHHHhhhCCchhhHhh---h---hhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHH
Q 003142 498 ----------WFDSVFADIGDEQSLSQ---S---LSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560 (844)
Q Consensus 498 ----------~~~~i~~~ig~~q~i~~---~---lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~I 560 (844)
.........+..+.+.. + ...+|++ .+|+..+.+++.+|+++||||||+++|+.....+...+
T Consensus 434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 00111222233322211 1 1356765 56677777889999999999999999997777776666
Q ss_pred HHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 561 le~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
++.+...+.| +|++||+.+....||++..+.+|++..+
T Consensus 514 ~~~~~~~~~t-iiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 514 LPDLKRQGKT-IIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHhCCCE-EEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 6656566787 9999999988889999999999998643
No 335
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.1e-15 Score=171.53 Aligned_cols=159 Identities=16% Similarity=0.175 Sum_probs=107.9
Q ss_pred CCCCCchhhhhhccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccccc---------ccc---
Q 003142 427 TNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS---------SEY--- 493 (844)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa---------~~~--- 493 (844)
.+++..++.+.+ |++..+++-++. ..|+-++|+||||+|||||||+|+.-.+ .|++++. ...
T Consensus 79 ~Di~~~~fdLa~--G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v---~~f~veqE~~g~~t~~~~~~l~ 153 (582)
T KOG0062|consen 79 KDIHIDNFDLAY--GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQV---SGFHVEQEVRGDDTEALQSVLE 153 (582)
T ss_pred cceeeeeeeeee--cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCc---CccCchhheeccchHHHhhhhh
Confidence 345555566654 677777777777 5667799999999999999999964111 2233321 000
Q ss_pred ccc-------------------chhHHHhhhCCchh-hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 494 AKV-------------------PWFDSVFADIGDEQ-SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 494 ~~i-------------------~~~~~i~~~ig~~q-~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
+.. .+.+.++..+|..+ -..+...+|||+. .++..+.++..+|+||||||||+.||.
T Consensus 154 ~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv-- 231 (582)
T KOG0062|consen 154 SDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDV-- 231 (582)
T ss_pred ccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchh--
Confidence 000 00111333444433 2345567888864 567888888999999999999999998
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeE
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENAC 595 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~ 595 (844)
.+++ .+..+|...+.| +|+||||..|. ..|..++.+.+-+
T Consensus 232 -~av~-WLe~yL~t~~~T-~liVSHDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 232 -VAVA-WLENYLQTWKIT-SLIVSHDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred -HHHH-HHHHHHhhCCce-EEEEeccHHHHHHHHHHHHHHhhhh
Confidence 4554 366788888887 99999999988 4888887776633
No 336
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.60 E-value=2.2e-15 Score=181.26 Aligned_cols=145 Identities=15% Similarity=0.141 Sum_probs=97.4
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc----------ccccccccc-ccchhH--------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG----------LHILSSEYA-KVPWFD-------- 500 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G----------~~vpa~~~~-~i~~~~-------- 500 (844)
+++.+..+++|. .+|++++|+||||||||||+|+|+++.. +..| .++|+.... .-...+
T Consensus 463 ~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 541 (659)
T TIGR00954 463 NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-VYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSS 541 (659)
T ss_pred CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence 345799999999 8899999999999999999999977532 2222 123331100 001111
Q ss_pred --------------HHhhhCCchhhHhhh---------hhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 501 --------------SVFADIGDEQSLSQS---------LSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 501 --------------~i~~~ig~~q~i~~~---------lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
.++..++..+.+... ...+|+++ +++..+.+++.+|+++||||||+|+|+.....+
T Consensus 542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l 621 (659)
T TIGR00954 542 EDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYM 621 (659)
T ss_pred hhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence 122223333322221 14677755 556677778999999999999999999655544
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003142 557 GMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591 (844)
Q Consensus 557 ~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v 591 (844)
. +.+.+.|.| +|++||+.++..+|+++..+
T Consensus 622 ~----~~l~~~~~t-vI~isH~~~~~~~~d~il~l 651 (659)
T TIGR00954 622 Y----RLCREFGIT-LFSVSHRKSLWKYHEYLLYM 651 (659)
T ss_pred H----HHHHHcCCE-EEEEeCchHHHHhCCEEEEE
Confidence 3 344445887 99999999998888887665
No 337
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.60 E-value=3.1e-15 Score=177.04 Aligned_cols=154 Identities=11% Similarity=0.109 Sum_probs=104.2
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccccccccccc---c--
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYA---K-- 495 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~~vpa~~~~---~-- 495 (844)
++++++++++. ++|+.++|+||||+|||||+|+|+++.-... .-.++|+...- .
T Consensus 344 ~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 423 (571)
T TIGR02203 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423 (571)
T ss_pred CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHH
Confidence 46789999999 8899999999999999999999965432111 01122321000 0
Q ss_pred --cc----------hhHHHhhhCCchhhHhh---hh--------hhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 496 --VP----------WFDSVFADIGDEQSLSQ---SL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 496 --i~----------~~~~i~~~ig~~q~i~~---~l--------stfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
+. .+.+.+...|..+.+.. ++ ..+|| +.||+..+.+++.+|+++||||||+++|+.
T Consensus 424 ~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~ 503 (571)
T TIGR02203 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503 (571)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 00 00111222233322221 11 24666 556777777889999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
....+...+ ..+. .++| +|++||+..+..+||++..+.+|++..
T Consensus 504 ~~~~i~~~L-~~~~-~~~t-iIiitH~~~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 504 SERLVQAAL-ERLM-QGRT-TLVIAHRLSTIEKADRIVVMDDGRIVE 547 (571)
T ss_pred HHHHHHHHH-HHHh-CCCE-EEEEehhhHHHHhCCEEEEEeCCEEEe
Confidence 777775544 4433 4576 999999999999999999999888753
No 338
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.3e-15 Score=158.29 Aligned_cols=150 Identities=21% Similarity=0.223 Sum_probs=114.5
Q ss_pred eeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh--------------hccccccccccccccc-------------
Q 003142 446 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--------------AKSGLHILSSEYAKVP------------- 497 (844)
Q Consensus 446 ~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~--------------~q~G~~vpa~~~~~i~------------- 497 (844)
..+++|. ++..+++|.|++|||||||+++|+++.-. +..|.++|. +...++
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~-~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPP-EKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccCh-hhheeeeEeeccccccceE
Confidence 4456666 44479999999999999999999876432 223444554 222222
Q ss_pred ---------------hhHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHH
Q 003142 498 ---------------WFDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 561 (844)
Q Consensus 498 ---------------~~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Il 561 (844)
.|+++...+|.+.-+....+++||+. ||++.-.++++.|.|||||||.+.||..-...++ -.+
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eil-pyl 171 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL-PYL 171 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHH-HHH
Confidence 35667777888888888889999854 5566667889999999999999999997777775 566
Q ss_pred HHHHhc-CCeEEEEEccch-hHHhhhccccceeeeEEEE
Q 003142 562 EAFAES-GSLLTIATTHHG-ELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 562 e~L~~~-g~t~vIitTHd~-el~~~a~~~~~v~ng~v~f 598 (844)
+.|.+. ... |+.+||.. ++..+|++++.+.||++.-
T Consensus 172 ERL~~e~~IP-IlYVSHS~~Ev~RLAd~vV~le~GkV~A 209 (352)
T COG4148 172 ERLRDEINIP-ILYVSHSLDEVLRLADRVVVLENGKVKA 209 (352)
T ss_pred HHHHHhcCCC-EEEEecCHHHHHhhhheEEEecCCeEEe
Confidence 777654 777 99999985 5668999999999999964
No 339
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.60 E-value=3.7e-15 Score=149.75 Aligned_cols=155 Identities=19% Similarity=0.208 Sum_probs=105.1
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh---------------------hcccc----cccccccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM---------------------AKSGL----HILSSEYA 494 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~---------------------~q~G~----~vpa~~~~ 494 (844)
++-...++++|. .+|+.-+|+||||+||||+|.+|.+-.-. ++.|. ..|. -..
T Consensus 16 ~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~Pt-Vfe 94 (249)
T COG4674 16 GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPT-VFE 94 (249)
T ss_pred cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCe-ehh
Confidence 466789999999 89999999999999999999999543211 11121 0010 000
Q ss_pred ccch-----------------------------hHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHH-hCCCCcEEEEecC
Q 003142 495 KVPW-----------------------------FDSVFADIGDEQSLSQSLSTFSGHLKQIGNIIS-QSTSQSLVLLDEI 544 (844)
Q Consensus 495 ~i~~-----------------------------~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~-~a~~p~LLLLDEP 544 (844)
.+++ .+.++..+|..+......+.+|.++++...|-+ ++++|.|||||||
T Consensus 95 ~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEP 174 (249)
T COG4674 95 NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEP 174 (249)
T ss_pred hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCc
Confidence 1111 122333344444444444556655555555443 4789999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.+|+-..+....+ .++..++. +++ |+++.||++|. .+|+++-.+..|++.-.
T Consensus 175 vAGMTd~Et~~ta-eLl~~la~-~hs-ilVVEHDM~Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 175 VAGMTDAETEKTA-ELLKSLAG-KHS-ILVVEHDMGFVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred cCCCcHHHHHHHH-HHHHHHhc-Cce-EEEEeccHHHHHHhhheeEEEeccceeec
Confidence 9999988888876 46666664 455 89999999998 49998888888888643
No 340
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.60 E-value=2.3e-15 Score=180.55 Aligned_cols=161 Identities=14% Similarity=0.087 Sum_probs=107.3
Q ss_pred hhhccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccccccccccc
Q 003142 436 VSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYA 494 (844)
Q Consensus 436 ~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~~vpa~~~~ 494 (844)
..+-..+..+.+|++++ ++|+.++|+|+||||||||+|++.++..+.+ .-.++|+ +..
T Consensus 479 f~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q-~~~ 557 (709)
T COG2274 479 FRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQ-DPF 557 (709)
T ss_pred EEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcc-cch
Confidence 34434445799999999 9999999999999999999999954322111 0112232 100
Q ss_pred cc--chh------------HHH---hhhCCchhhHhh-----------hhhhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 495 KV--PWF------------DSV---FADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 495 ~i--~~~------------~~i---~~~ig~~q~i~~-----------~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
-+ ++. +++ ...-|..+.+.. .-+.+||++ |++..+.++..+|++|||||||
T Consensus 558 Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaT 637 (709)
T COG2274 558 LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT 637 (709)
T ss_pred hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcc
Confidence 00 000 111 111233333332 123456654 6677777889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
|+||+..-..+...+.+ +. .|+| +|++||.......||++..+..|++..++
T Consensus 638 SaLD~~sE~~I~~~L~~-~~-~~~T-~I~IaHRl~ti~~adrIiVl~~Gkiv~~g 689 (709)
T COG2274 638 SALDPETEAIILQNLLQ-IL-QGRT-VIIIAHRLSTIRSADRIIVLDQGKIVEQG 689 (709)
T ss_pred cccCHhHHHHHHHHHHH-Hh-cCCe-EEEEEccchHhhhccEEEEccCCceeccC
Confidence 99999666655544433 22 3576 89999999999999999999999998654
No 341
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.60 E-value=5.3e-15 Score=169.97 Aligned_cols=156 Identities=14% Similarity=0.121 Sum_probs=113.9
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccccc-----------------------cccc----
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILS-----------------------SEYA---- 494 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa-----------------------~~~~---- 494 (844)
..+.++++|+ ..|++++|+|++|||||||.|+|.++... ..|..... +...
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP 382 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP 382 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence 4578999999 89999999999999999999999665432 11211100 0000
Q ss_pred ccch----------------------hHHHhhhCCchh-hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 495 KVPW----------------------FDSVFADIGDEQ-SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 495 ~i~~----------------------~~~i~~~ig~~q-~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
..++ ++.++..+|... .+......|||++ +|+..+.+++.+|.+|++|||+|.||+
T Consensus 383 r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDv 462 (539)
T COG1123 383 RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462 (539)
T ss_pred cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCH
Confidence 0000 122344455544 3556667888855 667777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhccccceeeeEEEEec
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFFENACMEFDE 600 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~-~a~~~~~v~ng~v~fd~ 600 (844)
.-...+...+.+.-.+.|.| .||+|||+.+.. +|+++..+.+|.+...+
T Consensus 463 svqa~VlnLl~~lq~e~g~t-~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 463 SVQAQVLNLLKDLQEELGLT-YLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred HHHHHHHHHHHHHHHHhCCE-EEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 88888877666655566887 999999999884 89999999999997554
No 342
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.60 E-value=1.2e-15 Score=171.98 Aligned_cols=148 Identities=18% Similarity=0.134 Sum_probs=103.3
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchh-----------------------
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWF----------------------- 499 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~----------------------- 499 (844)
.+.++++|+ ..+.-++++||||+|||||||++.+ .+.+..|...|. ....+++|
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~g-dl~p~~G~vs~~-~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~ 481 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITG-DLQPTIGMVSRH-SHNKLPRYNQHLAEQLDLDKSSLEFMMPKFP 481 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhh-cccccccccccc-ccccchhhhhhhHhhcCcchhHHHHHHHhcc
Confidence 678888888 6667789999999999999999843 233334443332 22222222
Q ss_pred --------HHHhhhCCch-hhHhhhhhhhhHHhhHH-HHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 003142 500 --------DSVFADIGDE-QSLSQSLSTFSGHLKQI-GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 569 (844)
Q Consensus 500 --------~~i~~~ig~~-q~i~~~lstfS~~~~rl-~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~ 569 (844)
..++.++|.. +.....++++|.++++. ..+...+..|.+|||||||+|+|.....+++. ++.+..+
T Consensus 482 ~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~lae----aiNe~~G 557 (614)
T KOG0927|consen 482 DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAE----AINEFPG 557 (614)
T ss_pred ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHH----HHhccCC
Confidence 2234444444 33344567788776654 44555689999999999999999976666654 4555656
Q ss_pred eEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 570 LLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 570 t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
+ ||+||||..+. .++++++.+.|+.+.-
T Consensus 558 g-vv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 558 G-VVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred c-eeeeechhhHHHHHHHHhHhhccCceee
Confidence 5 89999998777 6999999999988853
No 343
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.59 E-value=3e-15 Score=181.82 Aligned_cols=153 Identities=15% Similarity=0.116 Sum_probs=104.5
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccccc--
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV-- 496 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i-- 496 (844)
.+++++++++|. ++|+.++|+||||||||||+|+|.++... ..| .++|+.. .-+
T Consensus 490 ~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~-~lf~g 567 (710)
T TIGR03796 490 LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP-WSGEILFDGIPREEIPREVLANSVAMVDQDI-FLFEG 567 (710)
T ss_pred CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEeHHHCCHHHHHhheeEEecCC-hhhhc
Confidence 346799999999 88999999999999999999999654221 111 1233210 000
Q ss_pred chhHHH---------------hhhCCchhhHhh-----------hhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCC
Q 003142 497 PWFDSV---------------FADIGDEQSLSQ-----------SLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 497 ~~~~~i---------------~~~ig~~q~i~~-----------~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlD 549 (844)
++.+++ ....+..+.+.. .-..+|| +.||+..+.+++.+|+++||||||++||
T Consensus 568 Ti~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD 647 (710)
T TIGR03796 568 TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALD 647 (710)
T ss_pred cHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCC
Confidence 011111 111222222211 1134666 4567777788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
+.....+...+ .+.++| +|++||.......||++..+.+|++..++
T Consensus 648 ~~te~~i~~~l----~~~~~T-~IiitHrl~~i~~~D~Iivl~~G~i~~~G 693 (710)
T TIGR03796 648 PETEKIIDDNL----RRRGCT-CIIVAHRLSTIRDCDEIIVLERGKVVQRG 693 (710)
T ss_pred HHHHHHHHHHH----HhcCCE-EEEEecCHHHHHhCCEEEEEeCCEEEEec
Confidence 96666655433 345787 99999999999999999999999987543
No 344
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.59 E-value=4.2e-15 Score=176.75 Aligned_cols=153 Identities=11% Similarity=0.119 Sum_probs=103.0
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccc-ccchh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA-KVPWF 499 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~-~i~~~ 499 (844)
+.+.+++++. ++|+.++|+||||||||||+++|+++.-. ..| .++|+.... .-++.
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 426 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-TVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIR 426 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC-CCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHH
Confidence 5689999999 88999999999999999999999654321 112 122221000 00011
Q ss_pred HHHh---------------hhCCchhhH-----------hhhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 500 DSVF---------------ADIGDEQSL-----------SQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 500 ~~i~---------------~~ig~~q~i-----------~~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
+++. ...+..+.+ ......+|+ +.+|+..+.+++.+|+++||||||+|+|+..
T Consensus 427 ~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~ 506 (585)
T TIGR01192 427 ENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 (585)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 1110 111111111 112234665 4566777778899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
...+...+ ..+. .+.| +|++||+.+....||++..+.+|++...
T Consensus 507 ~~~i~~~l-~~~~-~~~t-vI~isH~~~~~~~~d~i~~l~~G~i~~~ 550 (585)
T TIGR01192 507 EARVKNAI-DALR-KNRT-TFIIAHRLSTVRNADLVLFLDQGRLIEK 550 (585)
T ss_pred HHHHHHHH-HHHh-CCCE-EEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence 77775444 4443 4776 9999999988888999999999998643
No 345
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2e-15 Score=172.95 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=107.8
Q ss_pred hhhhhccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------ccccc
Q 003142 434 MQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSS 491 (844)
Q Consensus 434 ~~~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~ 491 (844)
..+.+-+ +++++.+++++ ++|+.++|+||||||||||+.+|.++.-.. .|. ++|..
T Consensus 326 l~~~y~~-g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~-~G~I~vng~~l~~l~~~~~~k~i~~v~Q~ 403 (559)
T COG4988 326 LSFRYPD-GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT-QGEIRVNGIDLRDLSPEAWRKQISWVSQN 403 (559)
T ss_pred eEEecCC-CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC-CceEEECCccccccCHHHHHhHeeeeCCC
Confidence 3344433 34899999999 899999999999999999999996653221 111 12210
Q ss_pred ccc-------ccc---------hhHHHhhhCCchhh----------HhhhhhhhhH-HhhHHHHHHHhCCCCcEEEEecC
Q 003142 492 EYA-------KVP---------WFDSVFADIGDEQS----------LSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 492 ~~~-------~i~---------~~~~i~~~ig~~q~----------i~~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP 544 (844)
... .+. ...+.....+..+. +..+-+.+|+ +.+|+..+.++..+++++|+|||
T Consensus 404 p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEp 483 (559)
T COG4988 404 PYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEP 483 (559)
T ss_pred CccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 000 000 00111122222222 2222234565 56888888899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
|+++|...-..+ ...+..+.+. .| +|++||+.+...-+|++..+.+|.+...+
T Consensus 484 TA~LD~etE~~i-~~~l~~l~~~-kt-vl~itHrl~~~~~~D~I~vld~G~l~~~g 536 (559)
T COG4988 484 TAHLDAETEQII-LQALQELAKQ-KT-VLVITHRLEDAADADRIVVLDNGRLVEQG 536 (559)
T ss_pred ccCCCHhHHHHH-HHHHHHHHhC-Ce-EEEEEcChHHHhcCCEEEEecCCceeccC
Confidence 999999555544 4455555544 66 99999999999999999999999987543
No 346
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.59 E-value=5.4e-15 Score=178.90 Aligned_cols=153 Identities=14% Similarity=0.103 Sum_probs=105.0
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccccc--
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV-- 496 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i-- 496 (844)
++++++++++|+ ++|+.++|+||||||||||+|+|.++.-. +.| .++|+.. .-+
T Consensus 464 ~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~-~lf~g 541 (686)
T TIGR03797 464 DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP-ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNG-RLMSG 541 (686)
T ss_pred CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCEEEECCEEcCcCCHHHHHhccEEEccCC-ccCcc
Confidence 456799999999 89999999999999999999999654321 111 1233211 000
Q ss_pred chhHH--------------HhhhCCchhhHhh-----------hhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 497 PWFDS--------------VFADIGDEQSLSQ-----------SLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 497 ~~~~~--------------i~~~ig~~q~i~~-----------~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
++.++ .....+..+.+.. +-..+|| +.||+..+.+++.+|+++||||||+++|+
T Consensus 542 TI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~ 621 (686)
T TIGR03797 542 SIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621 (686)
T ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 01111 1222233332221 1134666 45677778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
.....+...+ .+.+.| +|++||..+....+|++..+.+|++..++
T Consensus 622 ~te~~i~~~L----~~~~~T-~IiItHr~~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 622 RTQAIVSESL----ERLKVT-RIVIAHRLSTIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred HHHHHHHHHH----HHhCCe-EEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence 7666655433 333676 99999999999999999999999987543
No 347
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.1e-15 Score=168.18 Aligned_cols=169 Identities=17% Similarity=0.169 Sum_probs=117.3
Q ss_pred CCCchhhhhhccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccc------cc----cccc
Q 003142 429 LSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS------EY----AKVP 497 (844)
Q Consensus 429 ~~~~~~~~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~------~~----~~i~ 497 (844)
.+..+-++++-.....+++||+|+ ..|+-++|+|++||||||++.+|.+. +.++.|...... .. ..+.
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~-~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA-WDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc-cCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 344444555544555799999999 88888999999999999999999642 222333221110 00 0111
Q ss_pred h-------h--------------------HHHhhhCCchhhHhhh---h--------hhhhH-HhhHHHHHHHhCCCCcE
Q 003142 498 W-------F--------------------DSVFADIGDEQSLSQS---L--------STFSG-HLKQIGNIISQSTSQSL 538 (844)
Q Consensus 498 ~-------~--------------------~~i~~~ig~~q~i~~~---l--------stfS~-~~~rl~~il~~a~~p~L 538 (844)
+ | -.++...|.++.+... + ..||| +.+|+..+..+.++.++
T Consensus 416 vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl 495 (573)
T COG4987 416 VLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPL 495 (573)
T ss_pred hhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCe
Confidence 1 1 1123334444433332 1 24665 56777888888999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEecc
Q 003142 539 VLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDEV 601 (844)
Q Consensus 539 LLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~~ 601 (844)
+||||||.||||..-..+...+.+.+. |.| +|++||+......+|++..+.||++..++.
T Consensus 496 ~lLDEPTegLD~~TE~~vL~ll~~~~~--~kT-ll~vTHrL~~le~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 496 WLLDEPTEGLDPITERQVLALLFEHAE--GKT-LLMVTHRLRGLERMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred EEecCCcccCChhhHHHHHHHHHHHhc--CCe-EEEEecccccHhhcCEEEEEECCeeeecCC
Confidence 999999999999888888766655543 677 999999999999999999999999987654
No 348
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.59 E-value=3.7e-15 Score=176.86 Aligned_cols=153 Identities=11% Similarity=0.084 Sum_probs=104.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccccc--c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i--~ 497 (844)
++++++++++. ++|+.++|+||||||||||+|+|.++.-. +.| .++|+ +..-+ .
T Consensus 355 ~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p-~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q-~~~lf~~T 432 (582)
T PRK11176 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI-DEGEILLDGHDLRDYTLASLRNQVALVSQ-NVHLFNDT 432 (582)
T ss_pred CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC-CCceEEECCEEhhhcCHHHHHhhceEEcc-Cceeecch
Confidence 46799999999 88999999999999999999999654321 111 12332 11000 0
Q ss_pred hhHHHh----------------hhCCchhhHh---hhh--------hhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCC
Q 003142 498 WFDSVF----------------ADIGDEQSLS---QSL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 498 ~~~~i~----------------~~ig~~q~i~---~~l--------stfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlD 549 (844)
+.+++. ...+..+.+. .++ ..+|| +.||+..+.+++.+|+++||||||+++|
T Consensus 433 i~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD 512 (582)
T PRK11176 433 IANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512 (582)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCC
Confidence 111111 1112222111 112 23676 4567777778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
+.....+...+. .+. .++| +|++||+......||++..+.+|++..+
T Consensus 513 ~~t~~~i~~~l~-~~~-~~~t-vI~VtHr~~~~~~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 513 TESERAIQAALD-ELQ-KNRT-SLVIAHRLSTIEKADEILVVEDGEIVER 559 (582)
T ss_pred HHHHHHHHHHHH-HHh-CCCE-EEEEecchHHHHhCCEEEEEECCEEEEe
Confidence 977777765554 333 3576 9999999999999999999999988643
No 349
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.59 E-value=5.5e-15 Score=175.20 Aligned_cols=154 Identities=13% Similarity=0.127 Sum_probs=103.9
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccccc--
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV-- 496 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i-- 496 (844)
++.++++++++. ++|+.++|+||||||||||+++|+++... ..| .++|+ +..-+
T Consensus 326 ~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~q-~~~lf~~ 403 (569)
T PRK10789 326 TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV-SEGDIRFHDIPLTKLQLDSWRSRLAVVSQ-TPFLFSD 403 (569)
T ss_pred CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-CCCEEEECCEEHhhCCHHHHHhheEEEcc-CCeeccc
Confidence 345789999999 88999999999999999999999654321 112 12222 10000
Q ss_pred chhHHH---------------hhhCCchhhHh-----------hhhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCC
Q 003142 497 PWFDSV---------------FADIGDEQSLS-----------QSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 497 ~~~~~i---------------~~~ig~~q~i~-----------~~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlD 549 (844)
++.+++ ....+..+.+. .....+|++ .+|+..+.+++.+|+++||||||+|+|
T Consensus 404 ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD 483 (569)
T PRK10789 404 TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483 (569)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 011111 11112221111 111346664 566777778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
+.....+...+ ..+. .+.| +|++||+.+....+|++..+.+|++...
T Consensus 484 ~~~~~~i~~~l-~~~~-~~~t-ii~itH~~~~~~~~d~i~~l~~G~i~~~ 530 (569)
T PRK10789 484 GRTEHQILHNL-RQWG-EGRT-VIISAHRLSALTEASEILVMQHGHIAQR 530 (569)
T ss_pred HHHHHHHHHHH-HHHh-CCCE-EEEEecchhHHHcCCEEEEEeCCEEEEe
Confidence 97777776544 4443 5776 9999999988888999999999888643
No 350
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.58 E-value=6.3e-15 Score=174.87 Aligned_cols=153 Identities=17% Similarity=0.129 Sum_probs=105.4
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccccc--c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i--~ 497 (844)
++.++++++++ ++|+.++|+||||||||||+|+|+++.-. ..| .++|+ +..-+ +
T Consensus 352 ~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q-~~~lf~~t 429 (574)
T PRK11160 352 PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP-QQGEILLNGQPIADYSEAALRQAISVVSQ-RVHLFSAT 429 (574)
T ss_pred CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEhhhCCHHHHHhheeEEcc-cchhhccc
Confidence 35799999999 89999999999999999999999654211 112 12222 10000 0
Q ss_pred hh---------------HHHhhhCCchhhHhh----------hhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 498 WF---------------DSVFADIGDEQSLSQ----------SLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 498 ~~---------------~~i~~~ig~~q~i~~----------~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
+. .+.+...+..+.+.. .-..+|+ +.||+..+.+++.+|+++||||||+++|+.
T Consensus 430 i~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~ 509 (574)
T PRK11160 430 LRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509 (574)
T ss_pred HHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 01 111222333333332 2234666 456777778889999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
....+...+. .+. .+.| +|++||+......||++..+.+|++...
T Consensus 510 t~~~i~~~l~-~~~-~~~t-viiitHr~~~~~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 510 TERQILELLA-EHA-QNKT-VLMITHRLTGLEQFDRICVMDNGQIIEQ 554 (574)
T ss_pred HHHHHHHHHH-HHc-CCCE-EEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence 7777665444 443 4676 9999999988888999999999998643
No 351
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.58 E-value=8.6e-15 Score=174.21 Aligned_cols=152 Identities=11% Similarity=0.072 Sum_probs=104.4
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccccc--c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i--~ 497 (844)
++.++++++++ ++|+.++|+||||||||||+|+|.++.-. +.| .++|+ +..-+ +
T Consensus 353 ~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~~~l~~~i~~v~Q-~~~lF~~T 430 (592)
T PRK10790 353 DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL-TEGEIRLDGRPLSSLSHSVLRQGVAMVQQ-DPVVLADT 430 (592)
T ss_pred CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEhhhCCHHHHHhheEEEcc-CCccccch
Confidence 35699999999 89999999999999999999999654322 111 12332 11100 0
Q ss_pred hhH--------------HHhhhCCchhhHhh---hh--------hhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 498 WFD--------------SVFADIGDEQSLSQ---SL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 498 ~~~--------------~i~~~ig~~q~i~~---~l--------stfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
+.+ +.....|..+.+.. ++ ..+|| +.||+..+.+++.+|+++||||||+++|+.
T Consensus 431 i~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~ 510 (592)
T PRK10790 431 FLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510 (592)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 001 11222233332221 11 23666 557788888899999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
....+...+ ..+. .++| +|++||+......+|++..+.+|++..
T Consensus 511 t~~~i~~~l-~~~~-~~~t-vIivtHr~~~l~~~D~ii~l~~G~i~~ 554 (592)
T PRK10790 511 TEQAIQQAL-AAVR-EHTT-LVVIAHRLSTIVEADTILVLHRGQAVE 554 (592)
T ss_pred HHHHHHHHH-HHHh-CCCE-EEEEecchHHHHhCCEEEEEECCEEEE
Confidence 777665444 4443 3576 999999999998999999999999874
No 352
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.58 E-value=5.9e-15 Score=165.76 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=105.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccc--------------------ccc---ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS--------------------EYA---KVP 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~--------------------~~~---~i~ 497 (844)
+-...++++|+ ..|+|.+|+|.||+|||||+++|.++......-.++... ++. .++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lT 95 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLT 95 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccc
Confidence 56788999999 899999999999999999999996543221100000000 000 011
Q ss_pred hhHH------------------------HhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 498 WFDS------------------------VFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 498 ~~~~------------------------i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
.+++ +...+|..=+.+...+.+|-++ |++..+.++..++++|||||||+-|-|.+
T Consensus 96 V~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E 175 (501)
T COG3845 96 VAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175 (501)
T ss_pred hhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 1111 1122222222233334455444 55555557789999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccch-hHHhhhccccceeeeEEE
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHG-ELKTLKYSNDFFENACME 597 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~-el~~~a~~~~~v~ng~v~ 597 (844)
...+. .+++.|.+.|++ ||++||-. +...+||+...+..|++.
T Consensus 176 ~~~lf-~~l~~l~~~G~t-Ii~ITHKL~Ev~~iaDrvTVLR~Gkvv 219 (501)
T COG3845 176 ADELF-EILRRLAAEGKT-IIFITHKLKEVMAIADRVTVLRRGKVV 219 (501)
T ss_pred HHHHH-HHHHHHHHCCCE-EEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence 99987 577889999998 99999975 666899999999999874
No 353
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.58 E-value=7.2e-15 Score=178.03 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=104.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccccc--c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i--~ 497 (844)
.++++++++|. ++|+.++|+||||||||||+|+|.++.-. +.| .++|+ +..-+ +
T Consensus 477 ~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p-~~G~I~idg~~l~~~~~~~lr~~i~~v~Q-~~~lf~~T 554 (694)
T TIGR03375 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP-TEGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLFYGT 554 (694)
T ss_pred CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEEhhhCCHHHHHhccEEECC-Chhhhhhh
Confidence 45799999999 89999999999999999999999654221 111 12222 10000 0
Q ss_pred hhHH---------------HhhhCCchhhHhh-----------hhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 498 WFDS---------------VFADIGDEQSLSQ-----------SLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 498 ~~~~---------------i~~~ig~~q~i~~-----------~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
+.++ .....+..+.+.. .-..+|+ +.||+..+.+++.+|+++||||||+++|+
T Consensus 555 I~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~ 634 (694)
T TIGR03375 555 LRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDN 634 (694)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 0111 1122222222221 1134666 45677777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
.....+...+ ..+. .++| +|++||+......||++..+.+|++..
T Consensus 635 ~te~~i~~~l-~~~~-~~~T-~iiItHrl~~~~~~D~iivl~~G~i~e 679 (694)
T TIGR03375 635 RSEERFKDRL-KRWL-AGKT-LVLVTHRTSLLDLVDRIIVMDNGRIVA 679 (694)
T ss_pred HHHHHHHHHH-HHHh-CCCE-EEEEecCHHHHHhCCEEEEEeCCEEEe
Confidence 7777776554 4443 3676 999999999999999999999998864
No 354
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.57 E-value=6.6e-15 Score=153.26 Aligned_cols=146 Identities=19% Similarity=0.246 Sum_probs=88.1
Q ss_pred eEEEEe--cCceEEEEEccCCCCchhhHhhhhhHHHhhcc--cc------cc-ccccccccch-----------------
Q 003142 447 IDIFIA--RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS--GL------HI-LSSEYAKVPW----------------- 498 (844)
Q Consensus 447 ~disl~--~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~--G~------~v-pa~~~~~i~~----------------- 498 (844)
.+++|. .+|++++|+|||||||||+|++|....+-... +. .+ .......+.+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl 97 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGL 97 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCC
Confidence 455665 34789999999999999999999532110000 00 00 0000000000
Q ss_pred ----hHH-Hh-hhCCchhhHhhhhhhhhHHhhHHH-HHHHhC----------CCCcEEEEecCCCCCCHHHHHHHHHHHH
Q 003142 499 ----FDS-VF-ADIGDEQSLSQSLSTFSGHLKQIG-NIISQS----------TSQSLVLLDEIGAGTNPLEGTALGMSLL 561 (844)
Q Consensus 499 ----~~~-i~-~~ig~~q~i~~~lstfS~~~~rl~-~il~~a----------~~p~LLLLDEP~sGlDp~~~~al~~~Il 561 (844)
+.. ++ ...+....+.....++|+++++.. .+.+++ .+|+++|||||++|+|+.....+. .++
T Consensus 98 ~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~-~~l 176 (213)
T cd03279 98 DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA-TAL 176 (213)
T ss_pred CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHH-HHH
Confidence 000 01 111233444555677888765544 444444 267999999999999997777765 455
Q ss_pred HHHHhcCCeEEEEEccchhHHh-hhccccceeee
Q 003142 562 EAFAESGSLLTIATTHHGELKT-LKYSNDFFENA 594 (844)
Q Consensus 562 e~L~~~g~t~vIitTHd~el~~-~a~~~~~v~ng 594 (844)
..+.+.+.| +|++||+.++.. +++....+.+|
T Consensus 177 ~~~~~~~~t-ii~itH~~~~~~~~~~~i~~~~~~ 209 (213)
T cd03279 177 ELIRTENRM-VGVISHVEELKERIPQRLEVIKTP 209 (213)
T ss_pred HHHHhCCCE-EEEEECchHHHHhhCcEEEEEecC
Confidence 667766887 999999998774 55665555554
No 355
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.57 E-value=6.5e-15 Score=174.55 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=103.5
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccc-ccchh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA-KVPWF 499 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~-~i~~~ 499 (844)
+.+.++++|+ ++|+.++|+||||||||||+|+|.++... +.| .++|+.... .-++.
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p-~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~ 431 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP-QSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVM 431 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHH
Confidence 5789999999 89999999999999999999999654322 112 122221000 00011
Q ss_pred HHH---------------hhhCCchhhHh-----------hhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 500 DSV---------------FADIGDEQSLS-----------QSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 500 ~~i---------------~~~ig~~q~i~-----------~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
+++ +...+..+.+. ..-..+|+ +.+|+..+.+++.+|+++||||||+++|+..
T Consensus 432 ~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~ 511 (576)
T TIGR02204 432 ENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES 511 (576)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHH
Confidence 111 11112211111 12234665 5677888888899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
...+... +..+. .+.| +|++||+.+....+|++..+.+|++...
T Consensus 512 ~~~i~~~-l~~~~-~~~t-~IiitH~~~~~~~~d~vi~l~~g~~~~~ 555 (576)
T TIGR02204 512 EQLVQQA-LETLM-KGRT-TLIIAHRLATVLKADRIVVMDQGRIVAQ 555 (576)
T ss_pred HHHHHHH-HHHHh-CCCE-EEEEecchHHHHhCCEEEEEECCEEEee
Confidence 6665544 44443 4676 9999999999999999999999998643
No 356
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.7e-14 Score=142.35 Aligned_cols=156 Identities=21% Similarity=0.179 Sum_probs=102.7
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc------------------------------cc-
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------------------------------HI- 488 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~------------------------------~v- 488 (844)
++..-..+++|. .+|++++|+|.+||||||||++|..- ++++.|. ++
T Consensus 17 g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r-l~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~Vh 95 (258)
T COG4107 17 GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR-LTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVH 95 (258)
T ss_pred CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcc-cCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceee
Confidence 455667889999 88999999999999999999999531 1111111 00
Q ss_pred --cc-------ccccccch---------hH-------HHhhhCCc-hhhHhhhhhhhhHHhhHHHHHH-HhCCCCcEEEE
Q 003142 489 --LS-------SEYAKVPW---------FD-------SVFADIGD-EQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLL 541 (844)
Q Consensus 489 --pa-------~~~~~i~~---------~~-------~i~~~ig~-~q~i~~~lstfS~~~~rl~~il-~~a~~p~LLLL 541 (844)
|. ..+..++- +. ..+..... ...++....+||++|++...|. .+.+.|.|+++
T Consensus 96 QnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfM 175 (258)
T COG4107 96 QNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFM 175 (258)
T ss_pred cCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEe
Confidence 10 00001100 00 01111111 2334556679999997655554 56899999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHH-HhcCCeEEEEEccchhHHh-hhccccceeeeEEEEe
Q 003142 542 DEIGAGTNPLEGTALGMSLLEAF-AESGSLLTIATTHHGELKT-LKYSNDFFENACMEFD 599 (844)
Q Consensus 542 DEP~sGlDp~~~~al~~~Ile~L-~~~g~t~vIitTHd~el~~-~a~~~~~v~ng~v~fd 599 (844)
||||.|||..-.+.+. .++.-| .+.+.. ++++|||...+. ++++...+..|.+...
T Consensus 176 DEPTGGLDVSVQARLL-DllrgLv~~l~la-~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 176 DEPTGGLDVSVQARLL-DLLRGLVRELGLA-VVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred cCCCCCcchhhHHHHH-HHHHHHHHhcCce-EEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999996666655 455555 456876 999999999886 6677777777777543
No 357
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.56 E-value=9e-15 Score=177.20 Aligned_cols=156 Identities=13% Similarity=0.067 Sum_probs=105.7
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccccccccccccc--c
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYAKV--P 497 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~~vpa~~~~~i--~ 497 (844)
+++.+++++++. ++|+.++|+||||||||||+|+|+++....+ .-.++|+. ...+ +
T Consensus 468 ~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~-~~lf~~t 546 (694)
T TIGR01846 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQE-NVLFSRS 546 (694)
T ss_pred CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccC-Ceehhhh
Confidence 345789999999 8899999999999999999999965432111 01123321 0000 0
Q ss_pred hhHH---------------HhhhCCchhhHh-----------hhhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 498 WFDS---------------VFADIGDEQSLS-----------QSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 498 ~~~~---------------i~~~ig~~q~i~-----------~~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
+.++ .....+..+.+. ..-..+|++ .||+..+.+++.+|+++||||||+|+|+
T Consensus 547 i~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~ 626 (694)
T TIGR01846 547 IRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDY 626 (694)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCH
Confidence 0111 111122222221 122346664 5667777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
.....+...+. .+ ..+.| +|++||+.+....||++..+.+|++...+
T Consensus 627 ~~~~~i~~~l~-~~-~~~~t-~i~itH~~~~~~~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 627 ESEALIMRNMR-EI-CRGRT-VIIIAHRLSTVRACDRIIVLEKGQIAESG 673 (694)
T ss_pred HHHHHHHHHHH-HH-hCCCE-EEEEeCChHHHHhCCEEEEEeCCEEEEeC
Confidence 77777665444 44 35676 99999999888889999999999987543
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=99.56 E-value=1.1e-14 Score=186.95 Aligned_cols=158 Identities=12% Similarity=0.102 Sum_probs=106.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh-hccc------------------cccccccc--cccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSG------------------LHILSSEY--AKVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~-~q~G------------------~~vpa~~~--~~i~~~ 499 (844)
++.+++++++. .+|++++|+|||||||||||++|++.... ...| .++++... ..+.+.
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 34689999999 89999999999999999999999764211 0011 11221000 001111
Q ss_pred ------------------------HHHhhhCCchhhHhhhh-----hhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCC
Q 003142 500 ------------------------DSVFADIGDEQSLSQSL-----STFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 500 ------------------------~~i~~~ig~~q~i~~~l-----stfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlD 549 (844)
+.++..++..+...... ..+|+++ +|+..+.+++.+|++|||||||+|||
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 11222233322222221 3577765 55666677899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEccchh--HHhhhccccceee-eEEEEecc
Q 003142 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGE--LKTLKYSNDFFEN-ACMEFDEV 601 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~~g~t~vIitTHd~e--l~~~a~~~~~v~n-g~v~fd~~ 601 (844)
+.....+. .+++.+.+.|.| ||+|||+.. +..++|+...+.+ |++.+.+.
T Consensus 1052 ~~~a~~v~-~~L~~l~~~g~t-VI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1052 ARAAAIVM-RTVRNTVDTGRT-VVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHHHHH-HHHHHHHHCCCE-EEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 97777765 566677888887 999999976 4578999988886 78876543
No 359
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.56 E-value=1.4e-14 Score=175.98 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=104.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccccc--c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYAKV--P 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~~i--~ 497 (844)
++.++++++++ ++|+.++|+||||||||||+|+|.++.-. ..| .++|+.. .-+ +
T Consensus 486 ~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~-~lf~gT 563 (708)
T TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA-RSGEILLNGFSLKDIDRHTLRQFINYLPQEP-YIFSGS 563 (708)
T ss_pred CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CCcEEEECCEEHHHcCHHHHHHheEEEecCc-eehhHH
Confidence 46799999999 88999999999999999999999654221 111 1233210 000 0
Q ss_pred hhHHH----------------hhhCCchhhHh-----------hhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCC
Q 003142 498 WFDSV----------------FADIGDEQSLS-----------QSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 498 ~~~~i----------------~~~ig~~q~i~-----------~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlD 549 (844)
+.+++ ....+..+.+. ..-..+|+ +.||+..+.+++.+|++|||||||+++|
T Consensus 564 I~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD 643 (708)
T TIGR01193 564 ILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643 (708)
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence 01111 11122222221 11134566 4567777778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
+.....+...+.+ + .+.| +|++||+......||++..+.+|++..+
T Consensus 644 ~~te~~i~~~L~~-~--~~~T-~IiitHr~~~~~~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 644 TITEKKIVNNLLN-L--QDKT-IIFVAHRLSVAKQSDKIIVLDHGKIIEQ 689 (708)
T ss_pred HHHHHHHHHHHHH-h--cCCE-EEEEecchHHHHcCCEEEEEECCEEEEE
Confidence 9776666555543 3 4676 9999999999999999999999998654
No 360
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.56 E-value=1.3e-14 Score=153.62 Aligned_cols=154 Identities=13% Similarity=0.074 Sum_probs=111.8
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccccccc-c------cccchhHHHhhhCCchh-hHhh
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSE-Y------AKVPWFDSVFADIGDEQ-SLSQ 514 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~-~------~~i~~~~~i~~~ig~~q-~i~~ 514 (844)
.+.++++|+ ..|++++|+|.+||||||+-|+|.++.-.. .|....... . .....+..++..+|... .+..
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~r 105 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYR 105 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhc
Confidence 578899999 899999999999999999999995433221 232221101 0 01122345566777654 5566
Q ss_pred hhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHHh-hhccccce
Q 003142 515 SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKT-LKYSNDFF 591 (844)
Q Consensus 515 ~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~~-~a~~~~~v 591 (844)
....|||++ ||+..+.+++.+|+++++|||+|+||....+.+. .++..+.+ .|.+ .+++|||...+. +++++..+
T Consensus 106 yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIl-nLL~dlq~~~~lt-~lFIsHDL~vv~~isdri~VM 183 (268)
T COG4608 106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQIL-NLLKDLQEELGLT-YLFISHDLSVVRYISDRIAVM 183 (268)
T ss_pred CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHH-HHHHHHHHHhCCe-EEEEEEEHHhhhhhcccEEEE
Confidence 778899865 5666677889999999999999999996666665 45556655 4886 999999998885 78888888
Q ss_pred eeeEEEEec
Q 003142 592 ENACMEFDE 600 (844)
Q Consensus 592 ~ng~v~fd~ 600 (844)
..|.+....
T Consensus 184 y~G~iVE~g 192 (268)
T COG4608 184 YLGKIVEIG 192 (268)
T ss_pred ecCceeEec
Confidence 888886433
No 361
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.55 E-value=8.3e-15 Score=152.69 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=55.7
Q ss_pred hhhhhhhhHHhhHHHHHHH-hC----CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003142 513 SQSLSTFSGHLKQIGNIIS-QS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587 (844)
Q Consensus 513 ~~~lstfS~~~~rl~~il~-~a----~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~ 587 (844)
....+.+|+++++...+.. ++ .+|++++||||++|+||.....+. .++..+. .+.+ +|++||+.++..+|++
T Consensus 122 ~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~-~~l~~~~-~~~~-~iivs~~~~~~~~~d~ 198 (212)
T cd03274 122 WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVA-NYIKERT-KNAQ-FIVISLRNNMFELADR 198 (212)
T ss_pred ccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHH-HHHHHHc-CCCE-EEEEECcHHHHHhCCE
Confidence 3345677887766555543 33 368999999999999997777665 5555664 4565 8899999888889988
Q ss_pred ccce
Q 003142 588 NDFF 591 (844)
Q Consensus 588 ~~~v 591 (844)
+..+
T Consensus 199 v~~~ 202 (212)
T cd03274 199 LVGI 202 (212)
T ss_pred EEEE
Confidence 7665
No 362
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.55 E-value=1.6e-14 Score=149.69 Aligned_cols=77 Identities=17% Similarity=0.067 Sum_probs=57.8
Q ss_pred hhhhhhhhHHhhHH-------HHHHHhCCCCcEEEEecCCCCCCHHHHH-HHHHHHHHHHHhc-CCeEEEEEccchhHHh
Q 003142 513 SQSLSTFSGHLKQI-------GNIISQSTSQSLVLLDEIGAGTNPLEGT-ALGMSLLEAFAES-GSLLTIATTHHGELKT 583 (844)
Q Consensus 513 ~~~lstfS~~~~rl-------~~il~~a~~p~LLLLDEP~sGlDp~~~~-al~~~Ile~L~~~-g~t~vIitTHd~el~~ 583 (844)
....+.+|+++++. ..+.+++.+|+++|||||++|+|+.... .+. .++..+.+. +.+ +|++||+.++..
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~-~~l~~~~~~~~~~-iiiitH~~~~~~ 187 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLA-EIIEERKSQKNFQ-LIVITHDEELVD 187 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHH-HHHHHHHhccCCE-EEEEEecHHHHh
Confidence 44556788777663 3444668899999999999999997777 665 455566655 776 999999998887
Q ss_pred hhccccce
Q 003142 584 LKYSNDFF 591 (844)
Q Consensus 584 ~a~~~~~v 591 (844)
.|+++..+
T Consensus 188 ~~d~i~~l 195 (204)
T cd03240 188 AADHIYRV 195 (204)
T ss_pred hCCEEEEE
Confidence 77766544
No 363
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.55 E-value=2.6e-14 Score=153.25 Aligned_cols=92 Identities=18% Similarity=0.142 Sum_probs=69.9
Q ss_pred CCchh-hHhhhhhhhhHHhh-HHHHHHHhCCC---CcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003142 506 IGDEQ-SLSQSLSTFSGHLK-QIGNIISQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580 (844)
Q Consensus 506 ig~~q-~i~~~lstfS~~~~-rl~~il~~a~~---p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~e 580 (844)
+|... .+.+..+++|++++ ++..+.+++.+ |+++||||||+|||+.+...+.. ++..+.+.|.| +|++||+.+
T Consensus 156 vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~-~L~~l~~~g~t-vIiitH~~~ 233 (261)
T cd03271 156 VGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLE-VLQRLVDKGNT-VVVIEHNLD 233 (261)
T ss_pred cCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCE-EEEEeCCHH
Confidence 34443 34556677888664 45555556654 79999999999999988888764 56667778887 999999999
Q ss_pred HHhhhccccce------eeeEEEEe
Q 003142 581 LKTLKYSNDFF------ENACMEFD 599 (844)
Q Consensus 581 l~~~a~~~~~v------~ng~v~fd 599 (844)
+...|+.+..+ .+|++.+.
T Consensus 234 ~i~~aD~ii~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 234 VIKCADWIIDLGPEGGDGGGQVVAS 258 (261)
T ss_pred HHHhCCEEEEecCCcCCCCCEEEEe
Confidence 88889888888 67777654
No 364
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.54 E-value=1.6e-14 Score=178.64 Aligned_cols=153 Identities=20% Similarity=0.215 Sum_probs=107.5
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccc-------------cccccchhHHH--------
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS-------------EYAKVPWFDSV-------- 502 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~-------------~~~~i~~~~~i-------- 502 (844)
+.+++++. ++|++.+++|||||||||++|++.+.......-.++... .-...|.++.+
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 56788888 889999999999999999999985543221100011000 00011122222
Q ss_pred -----------------------hhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHH
Q 003142 503 -----------------------FADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558 (844)
Q Consensus 503 -----------------------~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~ 558 (844)
+..++.........+++|++++| +..+++++.+|++++||||++|+||..+.. .+
T Consensus 660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~-lW 738 (885)
T KOG0059|consen 660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRH-LW 738 (885)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHH-HH
Confidence 22233333334445678887755 677778899999999999999999966555 57
Q ss_pred HHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 559 SLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 559 ~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.++..+++.|.. +|+|||.++.. .+|++...+.+|++.--
T Consensus 739 ~ii~~~~k~g~a-iiLTSHsMeE~EaLCtR~aImv~G~l~ci 779 (885)
T KOG0059|consen 739 DIIARLRKNGKA-IILTSHSMEEAEALCTRTAIMVIGQLRCI 779 (885)
T ss_pred HHHHHHHhcCCE-EEEEcCCHHHHHHHhhhhheeecCeeEEe
Confidence 788888887765 99999999888 59999999999999753
No 365
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.54 E-value=1.9e-14 Score=174.87 Aligned_cols=152 Identities=11% Similarity=0.067 Sum_probs=101.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccc-ccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA-KVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~-~i~~ 498 (844)
+++|.+|+++. ++|+.++|+||||||||||+|+|.++.-. +.| .++|+.... .-++
T Consensus 493 ~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTI 571 (711)
T TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP-TGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSV 571 (711)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCH
Confidence 35799999999 89999999999999999999999654221 111 122221000 0000
Q ss_pred hHH---------------HhhhCCchhhHh-----------hhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 499 FDS---------------VFADIGDEQSLS-----------QSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 499 ~~~---------------i~~~ig~~q~i~-----------~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
-++ .....+..+.+. ..-..+|| +.||+..+.+++.+|+++||||||+++|+.
T Consensus 572 reNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~ 651 (711)
T TIGR00958 572 RENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE 651 (711)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHH
Confidence 111 111222222221 11124666 556777777889999999999999999995
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
....+. . .....+.| +|++||+.+....+|++..+.+|++...
T Consensus 652 te~~i~-~---~~~~~~~T-vIiItHrl~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 652 CEQLLQ-E---SRSRASRT-VLLIAHRLSTVERADQILVLKKGSVVEM 694 (711)
T ss_pred HHHHHH-H---hhccCCCe-EEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 544443 2 22335676 9999999999999999999999998754
No 366
>PTZ00243 ABC transporter; Provisional
Probab=99.53 E-value=2.4e-14 Score=185.78 Aligned_cols=157 Identities=13% Similarity=0.148 Sum_probs=107.1
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-------ccccccccccc-ccchhHHH---------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------SGLHILSSEYA-KVPWFDSV--------- 502 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-------~G~~vpa~~~~-~i~~~~~i--------- 502 (844)
+++.++++++|. .+|++++|+|||||||||||++|.+...... .-.++|+.... ...+.+++
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~ 750 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAA 750 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHH
Confidence 346789999999 8999999999999999999999965432110 01133331100 00111111
Q ss_pred -----hh---------hC--CchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 003142 503 -----FA---------DI--GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565 (844)
Q Consensus 503 -----~~---------~i--g~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~ 565 (844)
.. .+ |+...+......+||++ +|+..+.+++.+|+++|||||+++||+.....+...++....
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~ 830 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL 830 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh
Confidence 11 11 22222233345677755 566777788999999999999999999877777655443322
Q ss_pred hcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 566 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 566 ~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
.|.| +|++||+.++..+|+++..+.+|.+.++
T Consensus 831 -~~~T-vIlvTH~~~~~~~ad~ii~l~~G~i~~~ 862 (1560)
T PTZ00243 831 -AGKT-RVLATHQVHVVPRADYVVALGDGRVEFS 862 (1560)
T ss_pred -CCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 4776 9999999999999999999999998764
No 367
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.53 E-value=1.8e-14 Score=186.72 Aligned_cols=154 Identities=18% Similarity=0.109 Sum_probs=106.1
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------ccccccccc-ccchhHHHh---------
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSVF--------- 503 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------~~vpa~~~~-~i~~~~~i~--------- 503 (844)
++++.|++|. ++|++++|+|||||||||||++|.+..... .| .|+|..... .-.+.+++.
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~-~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS-EGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEEEEeCCCccCCccHHHHHHhccccchHH
Confidence 5689999999 899999999999999999999996543221 11 123321000 001111111
Q ss_pred -----hhCCchhhH-----------hhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 003142 504 -----ADIGDEQSL-----------SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 566 (844)
Q Consensus 504 -----~~ig~~q~i-----------~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~ 566 (844)
...+....+ .....++||++ +|+..+.+++.+|+++|||||++|+|+.....+...++..+.
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~- 596 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM- 596 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence 111111111 11224677765 566677788999999999999999999888888765555444
Q ss_pred cCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 567 SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 567 ~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
++.| +|++||+.+....|+++..+.+|.+..+
T Consensus 597 ~~~t-vilvtH~~~~~~~ad~ii~l~~g~i~~~ 628 (1490)
T TIGR01271 597 SNKT-RILVTSKLEHLKKADKILLLHEGVCYFY 628 (1490)
T ss_pred cCCe-EEEEeCChHHHHhCCEEEEEECCEEEEE
Confidence 4776 9999999988888999999999988654
No 368
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=5.6e-14 Score=159.22 Aligned_cols=154 Identities=15% Similarity=0.099 Sum_probs=110.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH-------------------hhccccccccccccccc--h-
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM-------------------MAKSGLHILSSEYAKVP--W- 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~-------------------~~q~G~~vpa~~~~~i~--~- 498 (844)
++.|+++++|+ +.|+-++|+|+|||||||+||+|-.+.- +-+.-.++|+ +..-+. +
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQ-d~~LFndTIl 442 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQ-DSVLFNDTIL 442 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCC-cccccchhHH
Confidence 44599999999 8888899999999999999999842210 1122234565 221110 0
Q ss_pred -----------hH---HHhhhCCchhhHhhhhh-----------hhh-HHhhHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 499 -----------FD---SVFADIGDEQSLSQSLS-----------TFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 499 -----------~~---~i~~~ig~~q~i~~~ls-----------tfS-~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
++ .+....+..+.+..... .+| |++|+++.+.+.+.+|+++++|||||.||...
T Consensus 443 ~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~T 522 (591)
T KOG0057|consen 443 YNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSET 522 (591)
T ss_pred HHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhh
Confidence 11 12234455554443322 234 46678888888999999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
-..+...+.+ ...+.| +|++-|++.+...+|++..+.||.|...
T Consensus 523 E~~i~~~i~~--~~~~rT-vI~IvH~l~ll~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 523 EREILDMIMD--VMSGRT-VIMIVHRLDLLKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred HHHHHHHHHH--hcCCCe-EEEEEecchhHhcCCEEEEEECCeeEEe
Confidence 7777776666 345677 9999999999999999999999999643
No 369
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.53 E-value=2.1e-14 Score=184.83 Aligned_cols=157 Identities=13% Similarity=0.107 Sum_probs=105.2
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh--hccc-----------------cccccccc--cccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSG-----------------LHILSSEY--AKVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~--~q~G-----------------~~vpa~~~--~~i~~~ 499 (844)
++.+++++++. .+|++++|+|||||||||||++|++..-. ...| .++|+... ....+.
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 45789999999 89999999999999999999999765321 0111 12222100 001111
Q ss_pred H------------------------HHhhhCCchhhHhhhhh----hhhHHh-hHHHHHHHhCCCCc-EEEEecCCCCCC
Q 003142 500 D------------------------SVFADIGDEQSLSQSLS----TFSGHL-KQIGNIISQSTSQS-LVLLDEIGAGTN 549 (844)
Q Consensus 500 ~------------------------~i~~~ig~~q~i~~~ls----tfS~~~-~rl~~il~~a~~p~-LLLLDEP~sGlD 549 (844)
+ +++..++..+.....+. .+|+++ +|+..+.+++.+|+ +|||||||+|||
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD 934 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCC
Confidence 1 11222222222222222 477765 55666667889996 999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEccchhH--Hhhhccccceeee-EEEEec
Q 003142 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGEL--KTLKYSNDFFENA-CMEFDE 600 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~~g~t~vIitTHd~el--~~~a~~~~~v~ng-~v~fd~ 600 (844)
+.....+. .+++.+.+.|.| ||+|||++.. ...+|++..+.+| ++.+.+
T Consensus 935 ~~~~~~i~-~~L~~la~~g~t-vI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G 986 (1394)
T TIGR00956 935 SQTAWSIC-KLMRKLADHGQA-ILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG 986 (1394)
T ss_pred HHHHHHHH-HHHHHHHHcCCE-EEEEecCCCHHHHHhcCEEEEEcCCCEEEEEC
Confidence 97777665 566677777887 9999999864 3678999888887 887654
No 370
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.52 E-value=2.8e-14 Score=167.58 Aligned_cols=144 Identities=16% Similarity=0.129 Sum_probs=94.1
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccccccccccc-ccchhH
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYA-KVPWFD 500 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~~vpa~~~~-~i~~~~ 500 (844)
+++.+++++. ++|+.++|+||||||||||+|+|+++.-... .-.++|+.... .-.+.+
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~ 414 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAE 414 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHH
Confidence 4799999999 8999999999999999999999965422111 01122221000 000111
Q ss_pred H---------------HhhhCCchhhHh-----------hhhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 501 S---------------VFADIGDEQSLS-----------QSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 501 ~---------------i~~~ig~~q~i~-----------~~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
+ .....+..+.+. ..-..+||+ .||+..+.+++.+|+++||||||+++|+...
T Consensus 415 Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~ 494 (529)
T TIGR02857 415 NIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETE 494 (529)
T ss_pred HHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 1 111222222221 112346765 4667777788999999999999999999877
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003142 554 TALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589 (844)
Q Consensus 554 ~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~ 589 (844)
..+...+. .+. .++| +|++||+......||++.
T Consensus 495 ~~i~~~l~-~~~-~~~t-~i~itH~~~~~~~~d~i~ 527 (529)
T TIGR02857 495 ALVTEALR-ALA-QGRT-VLLVTHRLALAERADRIV 527 (529)
T ss_pred HHHHHHHH-Hhc-CCCE-EEEEecCHHHHHhCCEEE
Confidence 77765544 333 5676 999999998888887664
No 371
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.52 E-value=2.7e-13 Score=153.22 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=96.6
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh--hccccccc-----cccc--------------cccch
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSGLHIL-----SSEY--------------AKVPW 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~--~q~G~~vp-----a~~~--------------~~i~~ 498 (844)
.+..+..|..|. ..|+-++|+|||||||||+|++|++.... .+.+++.- +... .++.+
T Consensus 86 ~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~ 165 (614)
T KOG0927|consen 86 HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEY 165 (614)
T ss_pred CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHH
Confidence 466788888888 77788999999999999999999643221 11111100 0000 00000
Q ss_pred hHH-----------------------------------HhhhCCc-hhhHhhhhhhhhHH-hhHHHHHHHhCCCCcEEEE
Q 003142 499 FDS-----------------------------------VFADIGD-EQSLSQSLSTFSGH-LKQIGNIISQSTSQSLVLL 541 (844)
Q Consensus 499 ~~~-----------------------------------i~~~ig~-~q~i~~~lstfS~~-~~rl~~il~~a~~p~LLLL 541 (844)
+-. ++..+|. ...+......||++ +.|++.+.++..+|+||||
T Consensus 166 ~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLL 245 (614)
T KOG0927|consen 166 LAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLL 245 (614)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEe
Confidence 000 0111111 11122233446654 5667777788999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEccchhHH-hhhccccceeeeEE
Q 003142 542 DEIGAGTNPLEGTALGMSLLEAFAESGS-LLTIATTHHGELK-TLKYSNDFFENACM 596 (844)
Q Consensus 542 DEP~sGlDp~~~~al~~~Ile~L~~~g~-t~vIitTHd~el~-~~a~~~~~v~ng~v 596 (844)
||||+|||+. ++. .+-++|.++.. + +++++|+.++. .+|.+++.+.++..
T Consensus 246 DEPtnhLDle---A~~-wLee~L~k~d~~~-lVi~sh~QDfln~vCT~Ii~l~~kkl 297 (614)
T KOG0927|consen 246 DEPTNHLDLE---AIV-WLEEYLAKYDRII-LVIVSHSQDFLNGVCTNIIHLDNKKL 297 (614)
T ss_pred cCCccCCCHH---HHH-HHHHHHHhccCce-EEEEecchhhhhhHhhhhheecccce
Confidence 9999999993 333 35677777766 6 89999999888 58998888877664
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.51 E-value=6.4e-14 Score=148.14 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=54.9
Q ss_pred hhhhhhhHHhhHHHHH-HHhC----CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003142 514 QSLSTFSGHLKQIGNI-ISQS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588 (844)
Q Consensus 514 ~~lstfS~~~~rl~~i-l~~a----~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~ 588 (844)
.....+|+++++...+ .+++ .+|+++||||||+|+||.....+.. ++..+.+ +.+ +|++||..++..+|+++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~-~l~~~~~-~~~-ii~~~h~~~~~~~~d~i 230 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVAN-MIKELSD-GAQ-FITTTFRPELLEVADKF 230 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHH-HHHHHhC-CCE-EEEEecCHHHHhhCCEE
Confidence 3456788877654444 4443 4689999999999999977777654 4555554 665 89999998888888887
Q ss_pred cce
Q 003142 589 DFF 591 (844)
Q Consensus 589 ~~v 591 (844)
..+
T Consensus 231 ~~l 233 (243)
T cd03272 231 YGV 233 (243)
T ss_pred EEE
Confidence 655
No 373
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.50 E-value=5.3e-14 Score=181.11 Aligned_cols=157 Identities=11% Similarity=0.063 Sum_probs=105.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH---hhccc--------------------ccccccc--ccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM---MAKSG--------------------LHILSSE--YAK 495 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~---~~q~G--------------------~~vpa~~--~~~ 495 (844)
.+.+++++++. .+|++++|+||||||||||||+|++... ....| .+++... ...
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 46799999999 9999999999999999999999976531 11111 1112100 000
Q ss_pred cchhHH-----------------------------HhhhCCchhhHhh-----hhhhhhHHh-hHHHHHHHhCCCCcEEE
Q 003142 496 VPWFDS-----------------------------VFADIGDEQSLSQ-----SLSTFSGHL-KQIGNIISQSTSQSLVL 540 (844)
Q Consensus 496 i~~~~~-----------------------------i~~~ig~~q~i~~-----~lstfS~~~-~rl~~il~~a~~p~LLL 540 (844)
+.+.+. ++..+|..+.... ....+||++ ||+..+.+++.+|+++|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 111111 1222222221111 123467655 55666667899999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccch--hHHhhhccccceeeeEEEEec
Q 003142 541 LDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHG--ELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 541 LDEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~--el~~~a~~~~~v~ng~v~fd~ 600 (844)
|||||+|||+.....+.. +++.+.+ .|.| +|+++|+. ++..++|++..+.+|++.+.+
T Consensus 233 lDEPTsgLD~~~~~~i~~-~L~~la~~~g~t-vii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIR-ALKTSANILDTT-PLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred EeCCCCCcCHHHHHHHHH-HHHHHHHhcCCE-EEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 999999999988887764 5566765 4787 99999984 456799999999999998765
No 374
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.50 E-value=1.2e-13 Score=155.30 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=108.4
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------ccccccccccccccchh
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSGLHILSSEYAKVPWF 499 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~G~~vpa~~~~~i~~~ 499 (844)
..+++..+++|. ..|+.++|+||+|||||||.|+|.++.... ..-.|.|+.-.-.-+-+
T Consensus 347 ~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTI 426 (580)
T COG4618 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTI 426 (580)
T ss_pred CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcH
Confidence 456899999999 889999999999999999999996543221 11123333100000000
Q ss_pred HHHhhhCCc----------------hh-----------hHhhhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 500 DSVFADIGD----------------EQ-----------SLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 500 ~~i~~~ig~----------------~q-----------~i~~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
.+-.++|+. .+ .+-..=+++|+ +.||+..+.++..+|.|++||||-++||..
T Consensus 427 aeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~ 506 (580)
T COG4618 427 AENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE 506 (580)
T ss_pred HHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchh
Confidence 111122221 11 11112234565 557788888999999999999999999996
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEE
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACME 597 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~ 597 (844)
--.++..+|+ .++.+|++ +|++||-+.+...+|.+..+.+|.|.
T Consensus 507 GE~AL~~Ai~-~~k~rG~~-vvviaHRPs~L~~~Dkilvl~~G~~~ 550 (580)
T COG4618 507 GEAALAAAIL-AAKARGGT-VVVIAHRPSALASVDKILVLQDGRIA 550 (580)
T ss_pred HHHHHHHHHH-HHHHcCCE-EEEEecCHHHHhhcceeeeecCChHH
Confidence 6666666655 57888997 99999999999999999999999985
No 375
>PLN03140 ABC transporter G family member; Provisional
Probab=99.49 E-value=4.1e-14 Score=181.90 Aligned_cols=82 Identities=12% Similarity=0.106 Sum_probs=65.6
Q ss_pred hhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccch--hHHhhhcccccee
Q 003142 517 STFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHG--ELKTLKYSNDFFE 592 (844)
Q Consensus 517 stfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~--el~~~a~~~~~v~ 592 (844)
+.+||++ +|+..+.+++.+|+++||||||+|||+.....+.. +++.+.+ .|.| +|+++|+. +...++|++..+.
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~-~Lr~la~~~g~T-viis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK-CLQQIVHLTEAT-VLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHH-HHHHHHHhcCCE-EEEEecCCCHHHHHHhheEEEee
Confidence 4566655 55666667889999999999999999988888865 5555654 5777 99999984 5668999999999
Q ss_pred eeEEEEec
Q 003142 593 NACMEFDE 600 (844)
Q Consensus 593 ng~v~fd~ 600 (844)
+|++.+.+
T Consensus 413 ~G~ivy~G 420 (1470)
T PLN03140 413 EGQIVYQG 420 (1470)
T ss_pred CceEEEeC
Confidence 99998765
No 376
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.48 E-value=1.4e-13 Score=177.52 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=61.8
Q ss_pred hhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeee
Q 003142 517 STFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENA 594 (844)
Q Consensus 517 stfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~~~a~~~~~v~ng 594 (844)
..+|+++ ||+..+.+++.+|++|||||||++||+.....+. ..++.+.. .|.| +|++||+......|+++..+.+|
T Consensus 578 ~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~~~~g~T-vIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ-KTINNLKGNENRI-TIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH-HHHHHHhhcCCCE-EEEEeCCHHHHHhCCEEEEEeCC
Confidence 4567655 6677777889999999999999999997766665 45555554 5787 99999999888899999999887
Q ss_pred E
Q 003142 595 C 595 (844)
Q Consensus 595 ~ 595 (844)
+
T Consensus 656 ~ 656 (1466)
T PTZ00265 656 E 656 (1466)
T ss_pred c
Confidence 4
No 377
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.47 E-value=1.9e-13 Score=160.63 Aligned_cols=132 Identities=20% Similarity=0.200 Sum_probs=85.6
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------------------ccccccccccc--chh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------------------LHILSSEYAKV--PWF 499 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------------------~~vpa~~~~~i--~~~ 499 (844)
+.+++|+++. ++|+.++|+||||||||||+|+|.++.-. ..| .++|+.. .-+ ++.
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~-~lF~~TI~ 425 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP-LQGEVTLDGVSVSSLQDELRRRISVFAQDA-HLFDTTVR 425 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEEhhhHHHHHHhheEEEccCc-ccccccHH
Confidence 4699999999 89999999999999999999999643211 111 1333311 000 011
Q ss_pred HH---------------HhhhCCchhhHhh---hh--------hhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 500 DS---------------VFADIGDEQSLSQ---SL--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 500 ~~---------------i~~~ig~~q~i~~---~l--------stfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
++ .....+..+.+.. ++ ..+|| +.||+..+.+++.+|+++|||||||++|+..
T Consensus 426 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~t 505 (529)
T TIGR02868 426 DNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGT 505 (529)
T ss_pred HHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 11 1222233332221 11 23666 5577788888999999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccch
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~ 579 (844)
...+...+.+ + ..+.| +|++||+.
T Consensus 506 e~~I~~~l~~-~-~~~~T-vIiItHrl 529 (529)
T TIGR02868 506 ESELLEDLLA-A-LSGKT-VVVITHHL 529 (529)
T ss_pred HHHHHHHHHH-h-cCCCE-EEEEecCC
Confidence 6666554443 2 34676 99999973
No 378
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.47 E-value=1.3e-13 Score=164.24 Aligned_cols=157 Identities=21% Similarity=0.271 Sum_probs=112.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh--hccc------------------ccccccccccc----
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSG------------------LHILSSEYAKV---- 496 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~--~q~G------------------~~vpa~~~~~i---- 496 (844)
.+.++++++.. .+|++++|+||.||||||||+++++-..- ...| .|+++ +...+
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~Q-dD~l~~~LT 120 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQ-DDVLLPTLT 120 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcc-ccccccccc
Confidence 46899999999 99999999999999999999999654321 0111 12222 11100
Q ss_pred -----------------------chhHHHhhhCCchhhHhhhhh-----hhhH-HhhHHHHHHHhCCCCcEEEEecCCCC
Q 003142 497 -----------------------PWFDSVFADIGDEQSLSQSLS-----TFSG-HLKQIGNIISQSTSQSLVLLDEIGAG 547 (844)
Q Consensus 497 -----------------------~~~~~i~~~ig~~q~i~~~ls-----tfS~-~~~rl~~il~~a~~p~LLLLDEP~sG 547 (844)
..++.+...+|...-...-++ ..|| +.+|+..++.++.+|++|+|||||+|
T Consensus 121 V~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 121 VRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 112334445555422221121 2444 67888888899999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEccch--hHHhhhccccceeeeEEEEecc
Q 003142 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHG--ELKTLKYSNDFFENACMEFDEV 601 (844)
Q Consensus 548 lDp~~~~al~~~Ile~L~~~g~t~vIitTHd~--el~~~a~~~~~v~ng~v~fd~~ 601 (844)
||......+. .+++.+++.|.| ||+|=|.+ ++..+-|+...+.+|.+.|.+.
T Consensus 201 LDS~sA~~vv-~~Lk~lA~~grt-Vi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 201 LDSFSALQVV-QLLKRLARSGRT-VICTIHQPSSELFELFDKLLLLSEGEVVYSGS 254 (613)
T ss_pred cchhhHHHHH-HHHHHHHhCCCE-EEEEEeCCcHHHHHHHhHhhhhcCCcEEEecC
Confidence 9998887775 677778888997 99999985 5667889999999999998764
No 379
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.46 E-value=2.9e-13 Score=144.11 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=55.2
Q ss_pred hhhhHHhhHHHHHH-HhC----CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003142 517 STFSGHLKQIGNII-SQS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591 (844)
Q Consensus 517 stfS~~~~rl~~il-~~a----~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v 591 (844)
..+|+++++...+. +++ .+|+++|||||++|+|+.....+.. ++..+.+.|.+ +|++||+.++..+|+++..+
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~-~i~~~~~~g~~-vi~isH~~~~~~~~d~i~~~ 231 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVAS-YIREQAGPNFQ-FIVISLKEEFFSKADALVGV 231 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHH-HHHHhccCCcE-EEEEECCHHHHhhCCeEEEE
Confidence 56777665544444 443 3589999999999999987777764 55566666887 99999999988888877655
No 380
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.45 E-value=2.2e-13 Score=131.89 Aligned_cols=141 Identities=15% Similarity=0.130 Sum_probs=102.4
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh--hccc---------cccccccccccc-----------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM--AKSG---------LHILSSEYAKVP----------- 497 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~--~q~G---------~~vpa~~~~~i~----------- 497 (844)
++...+-+++++ .+|+|+-|+||+||||||||.-+++.... ...| -.+|+ ....++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa-~qRq~GiLFQD~lLFph 91 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA-AQRQIGILFQDALLFPH 91 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch-hhhheeeeecccccccc
Confidence 456778889999 88999999999999999999988653210 0001 01122 111111
Q ss_pred ----------------------hhHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHH
Q 003142 498 ----------------------WFDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 554 (844)
Q Consensus 498 ----------------------~~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~ 554 (844)
..+..+..+|......+...++||++ .|++...+++..|.++|||||+|.||..-+.
T Consensus 92 lsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~ 171 (213)
T COG4136 92 LSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRD 171 (213)
T ss_pred cccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHH
Confidence 11223455566666667777888866 4566667788999999999999999998888
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccchhHHh
Q 003142 555 ALGMSLLEAFAESGSLLTIATTHHGELKT 583 (844)
Q Consensus 555 al~~~Ile~L~~~g~t~vIitTHd~el~~ 583 (844)
..-..+...+...|.. +|.+|||++-..
T Consensus 172 qfR~wVFs~~r~agiP-tv~VTHD~~Dvp 199 (213)
T COG4136 172 QFRQWVFSEVRAAGIP-TVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHHHhcCCC-eEEEecccccCC
Confidence 8888888889999998 899999987653
No 381
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.45 E-value=2.8e-13 Score=139.74 Aligned_cols=142 Identities=16% Similarity=0.120 Sum_probs=81.4
Q ss_pred eEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhh----cccc----cccc-ccccc--------------cchh--HH
Q 003142 447 IDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL----HILS-SEYAK--------------VPWF--DS 501 (844)
Q Consensus 447 ~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----q~G~----~vpa-~~~~~--------------i~~~--~~ 501 (844)
.++++.-+..+.+|+||||+||||+|.+|....... ..|. ++.. ..... .... ..
T Consensus 13 ~~~~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T cd03276 13 RHLQIEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDM 92 (198)
T ss_pred eeeEEecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHH
Confidence 345555233478999999999999999985321100 0010 0000 00000 0000 01
Q ss_pred HhhhCCchhhHhhhhhhhhHHhhHHHHHH-Hh----CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEE
Q 003142 502 VFADIGDEQSLSQSLSTFSGHLKQIGNII-SQ----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIAT 575 (844)
Q Consensus 502 i~~~ig~~q~i~~~lstfS~~~~rl~~il-~~----a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIit 575 (844)
+...+...........++|+++++...+. ++ +.+|+++|||||++|+|+.....+...+.+...+ .+.++||++
T Consensus 93 ~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~ 172 (198)
T cd03276 93 ARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFIT 172 (198)
T ss_pred HHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 11111112233445677888777655544 33 5899999999999999998887776655554343 243238999
Q ss_pred ccchhHHhhhccc
Q 003142 576 THHGELKTLKYSN 588 (844)
Q Consensus 576 THd~el~~~a~~~ 588 (844)
||+++...-.+++
T Consensus 173 th~~~~i~~~d~v 185 (198)
T cd03276 173 PQDISGLASSDDV 185 (198)
T ss_pred CCcccccccccce
Confidence 9998877443443
No 382
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.45 E-value=3.5e-13 Score=159.78 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=103.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh---------------------hcccccccccccccc--c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM---------------------AKSGLHILSSEYAKV--P 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~---------------------~q~G~~vpa~~~~~i--~ 497 (844)
++.|.++++|. ++|+.++|+||+||||||++++|..+.-. .+.+ ++|+ +..-+ +
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~-~V~Q-d~~LF~~T 418 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG-IVSQ-DPLLFSGT 418 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc-EEcc-cceeeccc
Confidence 57899999999 88999999999999999999999543211 1111 2332 11000 0
Q ss_pred hhHHH---------------hhhCCchhhHhh-----------hhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 498 WFDSV---------------FADIGDEQSLSQ-----------SLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 498 ~~~~i---------------~~~ig~~q~i~~-----------~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
+.+++ ....+..+.+.. +-..+|+ +.||+..+.+++.+|++++|||||+++|+
T Consensus 419 I~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~ 498 (567)
T COG1132 419 IRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498 (567)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCH
Confidence 11111 111111121211 1234666 45667777788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
..-..+...+. .+. ++.| +|+++|.......||++..+.+|++...+
T Consensus 499 ~tE~~I~~~l~-~l~-~~rT-~iiIaHRlsti~~aD~IiVl~~G~i~e~G 545 (567)
T COG1132 499 ETEALIQDALK-KLL-KGRT-TLIIAHRLSTIKNADRIIVLDNGRIVERG 545 (567)
T ss_pred HhHHHHHHHHH-HHh-cCCE-EEEEeccHhHHHhCCEEEEEECCEEEEec
Confidence 77776665554 444 4566 78899998888789999999999976433
No 383
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.45 E-value=2.8e-13 Score=176.15 Aligned_cols=156 Identities=10% Similarity=0.043 Sum_probs=105.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------ccccccccc-ccchhHHH---------
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSV--------- 502 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------~~vpa~~~~-~i~~~~~i--------- 502 (844)
.+++++++++. ++|++++|+|||||||||||++|.+.... ..| .++|+.... .-.+.+++
T Consensus 650 ~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~-~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~ 728 (1522)
T TIGR00957 650 LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-VEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEK 728 (1522)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc-CCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHH
Confidence 35799999999 89999999999999999999999654321 111 133331100 00111111
Q ss_pred -----hhhCCchh-----------hHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHH-
Q 003142 503 -----FADIGDEQ-----------SLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF- 564 (844)
Q Consensus 503 -----~~~ig~~q-----------~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L- 564 (844)
....+..+ .+......+||++ +|+..+.++..+|+++||||||+++|+.....+...+....
T Consensus 729 ~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~ 808 (1522)
T TIGR00957 729 YYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEG 808 (1522)
T ss_pred HHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh
Confidence 11111111 1222234577755 56777778899999999999999999988888776665321
Q ss_pred HhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 565 ~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
..++.| +|++||+.++...||++..+.+|.+...
T Consensus 809 ~~~~~t-vIlvTH~~~~l~~~D~ii~l~~G~i~~~ 842 (1522)
T TIGR00957 809 VLKNKT-RILVTHGISYLPQVDVIIVMSGGKISEM 842 (1522)
T ss_pred hhcCCE-EEEEeCChhhhhhCCEEEEecCCeEEee
Confidence 124676 9999999988888999999999998643
No 384
>PLN03232 ABC transporter C family member; Provisional
Probab=99.44 E-value=4.2e-13 Score=174.30 Aligned_cols=156 Identities=11% Similarity=0.082 Sum_probs=106.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------ccccccccc-ccch-------------
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPW------------- 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------~~vpa~~~~-~i~~------------- 498 (844)
+++++.|++|. ++|+.++|+||+||||||||++|.+.......+ .++|+.... .-++
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e 708 (1495)
T PLN03232 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESE 708 (1495)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHH
Confidence 35799999999 899999999999999999999995433221111 123321000 0001
Q ss_pred -hHHHhhhCCchhhHhh-----------hhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 003142 499 -FDSVFADIGDEQSLSQ-----------SLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565 (844)
Q Consensus 499 -~~~i~~~ig~~q~i~~-----------~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~ 565 (844)
+.++....+..+.+.. .-..+||+ .+|+..+.++..+|+++||||||+++|+.....+...++..+.
T Consensus 709 ~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l 788 (1495)
T PLN03232 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL 788 (1495)
T ss_pred HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh
Confidence 1111222222222211 11246764 5677878888999999999999999999877777666555433
Q ss_pred hcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 566 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 566 ~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
++.| +|++||+......||++..+.+|.+...
T Consensus 789 -~~kT-~IlvTH~~~~l~~aD~Ii~L~~G~i~~~ 820 (1495)
T PLN03232 789 -KGKT-RVLVTNQLHFLPLMDRIILVSEGMIKEE 820 (1495)
T ss_pred -cCCE-EEEEECChhhHHhCCEEEEEeCCEEEEe
Confidence 5676 8999999999899999999999998643
No 385
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.43 E-value=6.4e-13 Score=141.70 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=56.6
Q ss_pred hhhhhhhHHhhHHHHHH-HhC----CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003142 514 QSLSTFSGHLKQIGNII-SQS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588 (844)
Q Consensus 514 ~~lstfS~~~~rl~~il-~~a----~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~ 588 (844)
.....+|+++++...+. +++ .+|+++||||||+|+|+.....+.. ++..+. .|.+ +|++||+.++..+|+++
T Consensus 162 ~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~-~g~~-ii~iSH~~~~~~~~d~v 238 (251)
T cd03273 162 ESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHF-KGSQ-FIVVSLKEGMFNNANVL 238 (251)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHc-CCCE-EEEEECCHHHHHhCCEE
Confidence 34556777776654444 333 6789999999999999988887765 444554 4776 99999999999999888
Q ss_pred ccee
Q 003142 589 DFFE 592 (844)
Q Consensus 589 ~~v~ 592 (844)
..+.
T Consensus 239 ~~~~ 242 (251)
T cd03273 239 FRTR 242 (251)
T ss_pred EEEE
Confidence 6653
No 386
>PLN03130 ABC transporter C family member; Provisional
Probab=99.43 E-value=6.4e-13 Score=173.05 Aligned_cols=155 Identities=12% Similarity=0.118 Sum_probs=107.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcc-c--------cccccccc---ccc--------c---
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-G--------LHILSSEY---AKV--------P--- 497 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~-G--------~~vpa~~~---~~i--------~--- 497 (844)
+++++.|++|. ++|+.++|+||+||||||||++|.+.... .. | .++|+... ..+ +
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~ 707 (1622)
T PLN03130 629 ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP-RSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDP 707 (1622)
T ss_pred CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc-CCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccH
Confidence 35789999999 89999999999999999999999654332 22 2 12332100 000 0
Q ss_pred -hhHHHhhhCCchhhHhh-----------hhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 003142 498 -WFDSVFADIGDEQSLSQ-----------SLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564 (844)
Q Consensus 498 -~~~~i~~~ig~~q~i~~-----------~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L 564 (844)
.+.++....+..+.+.. .-..+||+ .+|+..+.++..+|+++||||||+++|+.....+...++..+
T Consensus 708 e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~ 787 (1622)
T PLN03130 708 ERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE 787 (1622)
T ss_pred HHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH
Confidence 01112222232222221 11246764 567787888899999999999999999987777765555543
Q ss_pred HhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 565 ~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
. ++.| +|++||+......||++..+.+|.+...
T Consensus 788 l-~~kT-vIlVTH~l~~l~~aD~Ii~L~~G~i~e~ 820 (1622)
T PLN03130 788 L-RGKT-RVLVTNQLHFLSQVDRIILVHEGMIKEE 820 (1622)
T ss_pred h-cCCE-EEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence 3 4676 8999999999999999999999998653
No 387
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.42 E-value=7.3e-13 Score=162.55 Aligned_cols=153 Identities=13% Similarity=0.162 Sum_probs=99.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccc-cccc---------ccccchhH--------HH
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI-LSSE---------YAKVPWFD--------SV 502 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~v-pa~~---------~~~i~~~~--------~i 502 (844)
+..|+++++|. +.|+.++|+|||||||||++++|..+. .+..|... -... ...++.+. .+
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy-dP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI 443 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY-DPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTI 443 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccH
Confidence 44789999999 999999999999999999999985331 11112110 0000 00111100 01
Q ss_pred hhh--CCc-----------------hhhHhh---hhh--------hhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 503 FAD--IGD-----------------EQSLSQ---SLS--------TFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 503 ~~~--ig~-----------------~q~i~~---~ls--------tfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
... +|. .+.+.. ++. ++||++ ||++.+.+++.+|++|||||||++||+.
T Consensus 444 ~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~ 523 (1228)
T KOG0055|consen 444 RENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE 523 (1228)
T ss_pred HHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHH
Confidence 111 111 111111 111 246654 6677777889999999999999999995
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
... +....++.. ..|.| +|+++|.+.-.+.||.+..+++|++..
T Consensus 524 se~-~Vq~ALd~~-~~grT-TivVaHRLStIrnaD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 524 SER-VVQEALDKA-SKGRT-TIVVAHRLSTIRNADKIAVMEEGKIVE 567 (1228)
T ss_pred HHH-HHHHHHHHh-hcCCe-EEEEeeehhhhhccCEEEEEECCEEEE
Confidence 544 445556653 45776 799999988888899999999999954
No 388
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.42 E-value=6e-13 Score=131.25 Aligned_cols=146 Identities=16% Similarity=0.245 Sum_probs=98.4
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc--------cc---cc-------ccccccchhHH--
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------HI---LS-------SEYAKVPWFDS-- 501 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~--------~v---pa-------~~~~~i~~~~~-- 501 (844)
-+|..+++|+ ..|+++++-||+|+||||+||++-.... ...|. .+ .+ -....++|+.+
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFL 102 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHH
Confidence 3689999999 8999999999999999999999843211 11111 00 00 00112333322
Q ss_pred --------------------------------HhhhCCchhhHhh-hhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCC
Q 003142 502 --------------------------------VFADIGDEQSLSQ-SLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAG 547 (844)
Q Consensus 502 --------------------------------i~~~ig~~q~i~~-~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sG 547 (844)
++.+++..+.+.. ..+||||+.++ +..+..++.+-++|||||||+.
T Consensus 103 RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTas 182 (235)
T COG4778 103 RVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTAS 182 (235)
T ss_pred HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCccc
Confidence 2333333333322 34789986554 4445567889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-hhccccce
Q 003142 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-LKYSNDFF 591 (844)
Q Consensus 548 lDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~-~a~~~~~v 591 (844)
||..+...+. .++..-+..|+. +|=+-||.+... .|++...+
T Consensus 183 LDa~Nr~vVv-eli~e~Ka~GaA-lvGIFHDeevre~vadR~~~~ 225 (235)
T COG4778 183 LDATNRAVVV-ELIREAKARGAA-LVGIFHDEEVREAVADRLLDV 225 (235)
T ss_pred ccccchHHHH-HHHHHHHhcCce-EEEeeccHHHHHHHhhheeec
Confidence 9998888776 566666888987 899999998874 66665433
No 389
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.9e-13 Score=148.61 Aligned_cols=135 Identities=21% Similarity=0.224 Sum_probs=84.7
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHh-hhCCch---------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVF-ADIGDE--------- 509 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~-~~ig~~--------- 509 (844)
+.++.+..++|+ .=..-++|+||||.||||||+++.+ .+.++.|-.... ....+++|++.. ..+..+
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~G-kl~P~~GE~RKn-hrL~iG~FdQh~~E~L~~Eetp~EyLqr 675 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIG-KLDPNDGELRKN-HRLRIGWFDQHANEALNGEETPVEYLQR 675 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhc-CCCCCcchhhcc-ceeeeechhhhhHHhhccccCHHHHHHH
Confidence 556777777777 2223479999999999999999832 122222222111 334567776543 222222
Q ss_pred ------hhHhhhhhh--------------hhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 003142 510 ------QSLSQSLST--------------FSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG 568 (844)
Q Consensus 510 ------q~i~~~lst--------------fS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g 568 (844)
+.....+.+ +||+++ |++.+-..+..|++|||||||++||.....+++.+|.+ +.
T Consensus 676 ~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIne----y~ 751 (807)
T KOG0066|consen 676 KFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINE----YN 751 (807)
T ss_pred hcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHh----cc
Confidence 222222333 345544 34444445789999999999999999887777766654 44
Q ss_pred CeEEEEEccchhHH
Q 003142 569 SLLTIATTHHGELK 582 (844)
Q Consensus 569 ~t~vIitTHd~el~ 582 (844)
+. ||+||||..+.
T Consensus 752 Gg-Vi~VsHDeRLi 764 (807)
T KOG0066|consen 752 GG-VIMVSHDERLI 764 (807)
T ss_pred Cc-EEEEeccccee
Confidence 54 89999998776
No 390
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.40 E-value=1e-12 Score=169.65 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=61.8
Q ss_pred hhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEEEEccchhHHhhhccccceee--
Q 003142 518 TFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELKTLKYSNDFFEN-- 593 (844)
Q Consensus 518 tfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~-~~g~t~vIitTHd~el~~~a~~~~~v~n-- 593 (844)
.+||+ .||++.+.+++.+|++||||||||+||+.....+..+| ..+. ..+.| +|++||.......||++..+.+
T Consensus 1358 ~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L-~~~~~~~~~T-vIiIaHRlsti~~aD~Ivvl~~~~ 1435 (1466)
T PTZ00265 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI-VDIKDKADKT-IITIAHRIASIKRSDKIVVFNNPD 1435 (1466)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH-HHHhccCCCE-EEEEechHHHHHhCCEEEEEeCCC
Confidence 35664 56777778889999999999999999996666555444 4444 35777 9999999999999999999988
Q ss_pred --eEEE
Q 003142 594 --ACME 597 (844)
Q Consensus 594 --g~v~ 597 (844)
|++.
T Consensus 1436 ~~G~iv 1441 (1466)
T PTZ00265 1436 RTGSFV 1441 (1466)
T ss_pred CCCCEE
Confidence 7743
No 391
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.4e-12 Score=142.61 Aligned_cols=153 Identities=19% Similarity=0.207 Sum_probs=110.7
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc------cccccc-ccccchhHHHhhhCC--------
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL------HILSSE-YAKVPWFDSVFADIG-------- 507 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~------~vpa~~-~~~i~~~~~i~~~ig-------- 507 (844)
+-...++++ ..|+++-|+|.|||||||+++.+.++.. +|.|- ++.+.. ...-..|..+|+++.
T Consensus 337 FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~-PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~ 415 (546)
T COG4615 337 FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGP 415 (546)
T ss_pred ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC-CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence 333444455 5679999999999999999999954433 23332 222100 001123444544432
Q ss_pred ----chhhHhhhhhh-------------h-----h-HHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 003142 508 ----DEQSLSQSLST-------------F-----S-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564 (844)
Q Consensus 508 ----~~q~i~~~lst-------------f-----S-~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L 564 (844)
..+.+++.+.. | | |+.+|++.+++++.+.+++++||-.+--||.-+..+...++-.+
T Consensus 416 e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~L 495 (546)
T COG4615 416 EGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLL 495 (546)
T ss_pred ccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHH
Confidence 22344443321 2 2 57789999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 565 AESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 565 ~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
++.|.| |+++|||..-...||+...+.||.+..
T Consensus 496 K~qGKT-I~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 496 KEQGKT-IFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred HHhCCe-EEEEecCchhhhhHHHHHHHhcCceee
Confidence 999998 999999977778999999999999864
No 392
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.39 E-value=3.1e-13 Score=133.78 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=103.1
Q ss_pred EEEe-cCceEEEEEccCCCCchhhHhhhhhHH--------------------------Hhhcccc-------------cc
Q 003142 449 IFIA-RKTRVLVITGPNTGGKTICLKTVGLAV--------------------------MMAKSGL-------------HI 488 (844)
Q Consensus 449 isl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~--------------------------~~~q~G~-------------~v 488 (844)
++.. ..|+++-++||||+||||||-.++++. |++|... +.
T Consensus 18 lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~q 97 (248)
T COG4138 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQ 97 (248)
T ss_pred cccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcC
Confidence 3444 567999999999999999999886532 2222111 11
Q ss_pred ccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHh--------CCCCcEEEEecCCCCCCHHHHHHHHHHH
Q 003142 489 LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ--------STSQSLVLLDEIGAGTNPLEGTALGMSL 560 (844)
Q Consensus 489 pa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~--------a~~p~LLLLDEP~sGlDp~~~~al~~~I 560 (844)
|+ .......+.+...++..+.+...++.+||+.-+...+.+. -....|+|+|||.+++|.....++ ..+
T Consensus 98 P~--~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL-drl 174 (248)
T COG4138 98 PD--KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL-DRL 174 (248)
T ss_pred ch--HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH-HHH
Confidence 21 1112223445556677788888888888865433333221 134579999999999999776666 678
Q ss_pred HHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 561 LEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 561 le~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+..+...|.+ ||+++||.+.. .-|++...+..|.+...+
T Consensus 175 l~~~c~~G~~-vims~HDLNhTLrhA~~~wLL~rG~l~~~G 214 (248)
T COG4138 175 LSALCQQGLA-IVMSSHDLNHTLRHAHRAWLLKRGKLLASG 214 (248)
T ss_pred HHHHHhCCcE-EEEeccchhhHHHHHHHHHHHhcCeEEeec
Confidence 8999999997 99999997665 688888888888886654
No 393
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.39 E-value=9.7e-13 Score=133.61 Aligned_cols=130 Identities=21% Similarity=0.193 Sum_probs=78.1
Q ss_pred EEEEEccCCCCchhhHhhhhhHHHhhcccc------------ccccccccccch-hHH-HhhhCCchhhHhhhhhhhhHH
Q 003142 457 VLVITGPNTGGKTICLKTVGLAVMMAKSGL------------HILSSEYAKVPW-FDS-VFADIGDEQSLSQSLSTFSGH 522 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~------------~vpa~~~~~i~~-~~~-i~~~ig~~q~i~~~lstfS~~ 522 (844)
+.+|+||||+|||++|..|+.......... .-+......+.+ |+. ++.....+ ...- +|++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~--~~~~---LS~G 98 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGK--VEQI---LSGG 98 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCc--Cccc---CCHH
Confidence 889999999999999999864322110000 000001111110 111 11111111 0111 5665
Q ss_pred hhHHHHHH-Hh----CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceee
Q 003142 523 LKQIGNII-SQ----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 593 (844)
Q Consensus 523 ~~rl~~il-~~----a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~n 593 (844)
+++...+. ++ +.+|+++|+|||++|+|+.....+.. ++..+.+.|.+ +|++||+.++...++++..+..
T Consensus 99 e~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~-~L~~~~~~g~t-iIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 99 EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSD-MIKEMAKHTSQ-FIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCE-EEEEECCHHHHhhCCeEEEEEE
Confidence 55444333 33 36899999999999999988777765 55556666776 9999999988888887776654
No 394
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.37 E-value=2.1e-12 Score=141.70 Aligned_cols=155 Identities=15% Similarity=0.149 Sum_probs=105.7
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccc------------------------ccccccc--
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI------------------------LSSEYAK-- 495 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~v------------------------pa~~~~~-- 495 (844)
-.+.++++|+ ..|+.++|+|.+|||||||=.+|..+ ....|... ..+.++.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL--~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs 377 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL--IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS 377 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhh--cCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence 3567889999 88899999999999999998776321 11111100 0001111
Q ss_pred --cch-----------------------hHHHhhhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCC
Q 003142 496 --VPW-----------------------FDSVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGT 548 (844)
Q Consensus 496 --i~~-----------------------~~~i~~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGl 548 (844)
+.+ .-..+...|.. .....+...|||++ +|++.+.+++.+|.+++||||||+|
T Consensus 378 PRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSAL 457 (534)
T COG4172 378 PRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSAL 457 (534)
T ss_pred cccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHh
Confidence 110 00112233432 33455667899866 5667777889999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEecc
Q 003142 549 NPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDEV 601 (844)
Q Consensus 549 Dp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~~ 601 (844)
|..-...+ ..+++.|.+ .|.+ -+|+|||.... .+|++++.+.+|++...+.
T Consensus 458 D~SVQaQv-v~LLr~LQ~k~~Ls-YLFISHDL~VvrAl~~~viVm~~GkiVE~G~ 510 (534)
T COG4172 458 DRSVQAQV-LDLLRDLQQKHGLS-YLFISHDLAVVRALCHRVIVMRDGKIVEQGP 510 (534)
T ss_pred hHHHHHHH-HHHHHHHHHHhCCe-EEEEeccHHHHHHhhceEEEEeCCEEeeeCC
Confidence 98555555 467777765 4776 99999998877 5999999999999986554
No 395
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.6e-12 Score=152.08 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=101.2
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccc------ccccc----ccccc------------h
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH------ILSSE----YAKVP------------W 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~------vpa~~----~~~i~------------~ 498 (844)
+..|++|++|+ ++|++++|+|||||||||+..+|- -.|.+..|.. +..-. ...++ +
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~-rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI 558 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL-RFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSI 558 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccH
Confidence 55799999999 999999999999999999999882 2222222211 10000 00000 0
Q ss_pred hHHHhhh---------------CCchhhHhh-----------hhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 499 FDSVFAD---------------IGDEQSLSQ-----------SLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 499 ~~~i~~~---------------ig~~q~i~~-----------~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
-++|.-. -+..+.+.. .=+++||+ .||++.+.+++.+|.+|||||-||+||.
T Consensus 559 ~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDa- 637 (716)
T KOG0058|consen 559 RENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA- 637 (716)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcch-
Confidence 1111100 001111111 11245654 5677778889999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
+...+....++.+.+ +.| ||++.|...-.+-|+.+..+.+|++..-
T Consensus 638 eSE~lVq~aL~~~~~-~rT-VlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 638 ESEYLVQEALDRLMQ-GRT-VLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred hhHHHHHHHHHHhhc-CCe-EEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 555555555555443 476 9999999999999999999999999754
No 396
>PLN03232 ABC transporter C family member; Provisional
Probab=99.35 E-value=2.3e-12 Score=167.40 Aligned_cols=160 Identities=11% Similarity=-0.002 Sum_probs=104.2
Q ss_pred hhhccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------cccccccccccc
Q 003142 436 VSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSGLHILSSEYA 494 (844)
Q Consensus 436 ~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~G~~vpa~~~~ 494 (844)
..+-++..+|++|++|. ++|+.++|+||+|||||||+++|..+.-.. +.-.++|++...
T Consensus 1242 f~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~L 1321 (1495)
T PLN03232 1242 LRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVL 1321 (1495)
T ss_pred EEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCee
Confidence 34433446799999999 889999999999999999999995432110 011233331100
Q ss_pred ---c----cchh--------HHHhhhCCchhhHh-----------hhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCC
Q 003142 495 ---K----VPWF--------DSVFADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAG 547 (844)
Q Consensus 495 ---~----i~~~--------~~i~~~ig~~q~i~-----------~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sG 547 (844)
. +.++ .+.+...+..+.+. .+-+.+|+++ |++..+.+++.+|++|||||||++
T Consensus 1322 F~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSa 1401 (1495)
T PLN03232 1322 FSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATAS 1401 (1495)
T ss_pred eCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 0 0000 01122222222222 1123577655 566777788999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 548 lDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
+|+..-..+ ...++.. -+++| +|+++|..+....+|++..+.+|++..
T Consensus 1402 LD~~Te~~I-q~~L~~~-~~~~T-vI~IAHRl~ti~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1402 VDVRTDSLI-QRTIREE-FKSCT-MLVIAHRLNTIIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred CCHHHHHHH-HHHHHHH-cCCCE-EEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 999555544 3444433 24676 999999998888899999999999863
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.35 E-value=4.1e-12 Score=141.21 Aligned_cols=142 Identities=17% Similarity=0.154 Sum_probs=104.0
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhcc------ccccccc----ccccc---------------chhHHHhhhCC
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS------GLHILSS----EYAKV---------------PWFDSVFADIG 507 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~------G~~vpa~----~~~~i---------------~~~~~i~~~ig 507 (844)
..|++++++||||-|||||.|++++..-.... -++-|+. ....+ .+...++.-+.
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~ 444 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLN 444 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccc
Confidence 35899999999999999999999765432211 0112210 00111 12234455567
Q ss_pred chhhHhhhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhc
Q 003142 508 DEQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586 (844)
Q Consensus 508 ~~q~i~~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~ 586 (844)
.+..+++.+..+|| ++||++.++++..+++|.|||||.+.||..++...+..|.+...+.+.+ .+++-||..+..|
T Consensus 445 l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kt-a~vVdHDi~~~dy-- 521 (591)
T COG1245 445 LEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKT-ALVVDHDIYMIDY-- 521 (591)
T ss_pred hHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCce-EEEEecceehhhh--
Confidence 77788888888886 6788888889999999999999999999999998888887777777887 8999999988844
Q ss_pred cccceeeeEEEEecc
Q 003142 587 SNDFFENACMEFDEV 601 (844)
Q Consensus 587 ~~~~v~ng~v~fd~~ 601 (844)
+.+.-|.|.++
T Consensus 522 ----vsDr~ivF~Ge 532 (591)
T COG1245 522 ----VSDRLIVFEGE 532 (591)
T ss_pred ----hhceEEEEecC
Confidence 44555566553
No 398
>PLN03130 ABC transporter C family member; Provisional
Probab=99.35 E-value=2.9e-12 Score=167.05 Aligned_cols=160 Identities=11% Similarity=-0.000 Sum_probs=104.3
Q ss_pred hhhccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccccccccccc
Q 003142 436 VSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYA 494 (844)
Q Consensus 436 ~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~~vpa~~~~ 494 (844)
..+-++..+|++|++|+ ++|+.++|+||+|||||||+++|..+.-... .-.++|+...-
T Consensus 1245 f~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~L 1324 (1622)
T PLN03130 1245 LRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVL 1324 (1622)
T ss_pred EEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCcc
Confidence 34433345799999999 8999999999999999999999954321110 11123331100
Q ss_pred ---c----cchh--------HHHhhhCCchhhHh-----------hhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCC
Q 003142 495 ---K----VPWF--------DSVFADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAG 547 (844)
Q Consensus 495 ---~----i~~~--------~~i~~~ig~~q~i~-----------~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sG 547 (844)
. +.++ .+.+...+..+.+. .+-..+|+++ |++..+.+++.+|++|||||||++
T Consensus 1325 F~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSa 1404 (1622)
T PLN03130 1325 FSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAA 1404 (1622)
T ss_pred ccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 0 0000 01112222222222 1223577655 566777788999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 548 lDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
+|+..-..+. ..++... +++| +|+++|......-||++..+.+|++..
T Consensus 1405 LD~~Te~~Iq-~~I~~~~-~~~T-vI~IAHRL~tI~~~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1405 VDVRTDALIQ-KTIREEF-KSCT-MLIIAHRLNTIIDCDRILVLDAGRVVE 1452 (1622)
T ss_pred CCHHHHHHHH-HHHHHHC-CCCE-EEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 9995555443 4444332 4676 999999998888899999999999864
No 399
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.34 E-value=4.7e-12 Score=164.42 Aligned_cols=156 Identities=17% Similarity=0.108 Sum_probs=104.8
Q ss_pred hhhccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------ccccccc
Q 003142 436 VSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEY 493 (844)
Q Consensus 436 ~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~~~ 493 (844)
..+-++...|++|++|. .+|+.++|+|++|||||||+++|.++.- ..|. ++|+..
T Consensus 1225 ~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQdp- 1301 (1490)
T TIGR01271 1225 AKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKV- 1301 (1490)
T ss_pred EEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEeCCC-
Confidence 33333456899999999 8899999999999999999999976532 2232 233211
Q ss_pred ccc--------chh--------HHHhhhCCchhhHhh---hh--------hhhhHHh-hHHHHHHHhCCCCcEEEEecCC
Q 003142 494 AKV--------PWF--------DSVFADIGDEQSLSQ---SL--------STFSGHL-KQIGNIISQSTSQSLVLLDEIG 545 (844)
Q Consensus 494 ~~i--------~~~--------~~i~~~ig~~q~i~~---~l--------stfS~~~-~rl~~il~~a~~p~LLLLDEP~ 545 (844)
.-+ ..+ ...+...+..+.+.. ++ ..||+++ |++..+.+++.+|++|||||||
T Consensus 1302 ~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaT 1381 (1490)
T TIGR01271 1302 FIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPS 1381 (1490)
T ss_pred ccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 000 000 011222333322221 11 2467655 5667777889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEE
Q 003142 546 AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACME 597 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~ 597 (844)
+++|+..-..+. ..+... -.++| ||++||..+....+|++..+.+|++.
T Consensus 1382 S~lD~~Te~~I~-~~L~~~-~~~~T-vI~IaHRl~ti~~~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1382 AHLDPVTLQIIR-KTLKQS-FSNCT-VILSEHRVEALLECQQFLVIEGSSVK 1430 (1490)
T ss_pred ccCCHHHHHHHH-HHHHHH-cCCCE-EEEEecCHHHHHhCCEEEEEECCEEE
Confidence 999996555554 444432 24676 99999999888889999999999985
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.33 E-value=3.6e-12 Score=133.06 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=50.8
Q ss_pred hhhhhhHHhhHHHHHHHh-----CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-C-CeEEEEEccch-hHHhhhc
Q 003142 515 SLSTFSGHLKQIGNIISQ-----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-G-SLLTIATTHHG-ELKTLKY 586 (844)
Q Consensus 515 ~lstfS~~~~rl~~il~~-----a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~-g-~t~vIitTHd~-el~~~a~ 586 (844)
...++|++++++..+..+ +.+|+++|+|||++|+|+.....+...+ ..+.+. | .+ +|++||+. +...+++
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l-~~~~~~~g~~~-viiith~~~~~~~~~~ 200 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDML-VETACKEGTSQ-YFLITPKLLPGLNYHE 200 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHH-HHHhhcCCCce-EEEEchhhccCCcccC
Confidence 456788888876554432 5899999999999999998888776544 445554 5 45 88888885 4445665
Q ss_pred c
Q 003142 587 S 587 (844)
Q Consensus 587 ~ 587 (844)
+
T Consensus 201 ~ 201 (213)
T cd03277 201 K 201 (213)
T ss_pred c
Confidence 3
No 401
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.32 E-value=2.5e-12 Score=123.61 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=63.3
Q ss_pred eeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------cccccccccc--cccc-----
Q 003142 446 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEY--AKVP----- 497 (844)
Q Consensus 446 ~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~~vpa~~~--~~i~----- 497 (844)
++++++. ..|++++|+|||||||||||++|++...... ...+++.... ....
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3678888 7889999999999999999999965533211 0011221000 0000
Q ss_pred ---hhHHHhhhCCchhhHhhhh----hhhhHHh-hHHHHHHHhCCCCcEEEEecCCC
Q 003142 498 ---WFDSVFADIGDEQSLSQSL----STFSGHL-KQIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 498 ---~~~~i~~~ig~~q~i~~~l----stfS~~~-~rl~~il~~a~~p~LLLLDEP~s 546 (844)
.+..++..++........+ ..+|+++ +++..+.+++.+|+++|||||||
T Consensus 81 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1122344444433333333 7788755 55666677899999999999986
No 402
>PTZ00243 ABC transporter; Provisional
Probab=99.32 E-value=5.3e-12 Score=164.25 Aligned_cols=154 Identities=13% Similarity=0.039 Sum_probs=101.3
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------cccccccccccccc--c
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSGLHILSSEYAKV--P 497 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~G~~vpa~~~~~i--~ 497 (844)
+...|++|++|. .+|+.++|+|++|||||||+++|..+.-.. +.-.++|+.. .-+ +
T Consensus 1321 ~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp-~LF~gT 1399 (1560)
T PTZ00243 1321 GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDP-VLFDGT 1399 (1560)
T ss_pred CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCC-cccccc
Confidence 335699999999 889999999999999999999995432111 1112334311 100 0
Q ss_pred hhH--------------HHhhhCCchhhHhh-----------hhhhhhHHh-hHHHHHHHhCCC-CcEEEEecCCCCCCH
Q 003142 498 WFD--------------SVFADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTS-QSLVLLDEIGAGTNP 550 (844)
Q Consensus 498 ~~~--------------~i~~~ig~~q~i~~-----------~lstfS~~~-~rl~~il~~a~~-p~LLLLDEP~sGlDp 550 (844)
+-+ ..+...+..+.+.. +-+.+|+++ |++..+.+++.+ |++|||||||+++|+
T Consensus 1400 IreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~ 1479 (1560)
T PTZ00243 1400 VRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDP 1479 (1560)
T ss_pred HHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCH
Confidence 001 11222233322221 113577765 555666677774 899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
..-..+. ..+... -+++| +|+++|..+....+|++..+.+|++..
T Consensus 1480 ~te~~Iq-~~L~~~-~~~~T-vI~IAHRl~ti~~~DrIlVLd~G~VvE 1524 (1560)
T PTZ00243 1480 ALDRQIQ-ATVMSA-FSAYT-VITIAHRLHTVAQYDKIIVMDHGAVAE 1524 (1560)
T ss_pred HHHHHHH-HHHHHH-CCCCE-EEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 5555554 444433 24676 999999999999999999999999864
No 403
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.31 E-value=6e-12 Score=163.87 Aligned_cols=155 Identities=11% Similarity=-0.072 Sum_probs=101.8
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------cccccccccccc---c-
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSGLHILSSEYA---K- 495 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~G~~vpa~~~~---~- 495 (844)
+...|+++++|+ ++|+.++|+||+|||||||+++|..+.-.. ..-.++|++..- .
T Consensus 1297 ~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTI 1376 (1522)
T TIGR00957 1297 DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSL 1376 (1522)
T ss_pred CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccH
Confidence 335799999999 889999999999999999999995432111 001123331100 0
Q ss_pred ---cchh--------HHHhhhCCchhhHh-----------hhhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 496 ---VPWF--------DSVFADIGDEQSLS-----------QSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 496 ---i~~~--------~~i~~~ig~~q~i~-----------~~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
+..+ ...+...+..+.+. .+-..+|++ .|++..+.+++.+|++|||||||+++|+..
T Consensus 1377 r~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957 1377 RMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456 (1522)
T ss_pred HHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 0000 01112222222221 111346765 466777778899999999999999999955
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
-..+ ...++.. -+++| +|+++|..+....+|++..+.+|++..
T Consensus 1457 e~~I-q~~l~~~-~~~~T-vI~IAHRl~ti~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1457 DNLI-QSTIRTQ-FEDCT-VLTIAHRLNTIMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred HHHH-HHHHHHH-cCCCE-EEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 4444 4444432 24676 999999999998999999999999863
No 404
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.31 E-value=1.5e-11 Score=135.13 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=104.8
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh----cccc-------------------------cccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGL-------------------------HILS 490 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----q~G~-------------------------~vpa 490 (844)
+...+.++++|+ ..|+.++|+|.+|||||++..+|..+.... ..|. .+..
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 345688999999 889999999999999999988874332110 0000 0001
Q ss_pred ccccccchh----H----------------------HHhhhCCch---hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEE
Q 003142 491 SEYAKVPWF----D----------------------SVFADIGDE---QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVL 540 (844)
Q Consensus 491 ~~~~~i~~~----~----------------------~i~~~ig~~---q~i~~~lstfS~~~-~rl~~il~~a~~p~LLL 540 (844)
.....+... . .++...|.. ..+..+.-.+||+. +|+..+++++++|+|||
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLI 180 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLI 180 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEe
Confidence 000111000 0 122223322 23444555677754 66777778899999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 541 LDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 541 LDEP~sGlDp~~~~al~~~Ile~L~-~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
-||||++||..-.+.+.. +++.|. +.|.. ++++|||..+. .+||++..+..|.+..
T Consensus 181 ADEPTTALDVtvQaQIL~-Ll~~Lq~~~gMa-~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 181 ADEPTTALDVTVQAQILD-LLKELQAELGMA-ILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred ecCCcchhhhhhHHHHHH-HHHHHHHHhCcE-EEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 999999999977777664 555554 55876 99999999887 5999999999999854
No 405
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=8.8e-12 Score=153.44 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=67.5
Q ss_pred HhhhhhhhhHHhh-HHHHHHHhCC---CCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003142 512 LSQSLSTFSGHLK-QIGNIISQST---SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587 (844)
Q Consensus 512 i~~~lstfS~~~~-rl~~il~~a~---~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~ 587 (844)
+.+...++|++++ ++..+.+++. +|+|+||||||+|||+.+...+.. ++..+.+.|.| ||++||+.++...|+.
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~-~L~~l~~~G~T-VIvi~H~~~~i~~aD~ 899 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE-VLQRLVDQGNT-VVVIEHNLDVIKTADY 899 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCE-EEEEeCCHHHHHhCCE
Confidence 4555677888664 4555555554 589999999999999988888764 55667777887 9999999998888888
Q ss_pred ccce------eeeEEEEec
Q 003142 588 NDFF------ENACMEFDE 600 (844)
Q Consensus 588 ~~~v------~ng~v~fd~ 600 (844)
++.+ .+|++.+.+
T Consensus 900 ii~Lgp~~G~~gG~iv~~G 918 (924)
T TIGR00630 900 IIDLGPEGGDGGGTIVASG 918 (924)
T ss_pred EEEecCCccCCCCEEEEeC
Confidence 8888 678887643
No 406
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.28 E-value=2.3e-11 Score=124.41 Aligned_cols=191 Identities=17% Similarity=0.203 Sum_probs=139.4
Q ss_pred hhhhhcChH----------HHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH--HHHcCCCCCCCCCC
Q 003142 52 ESLRVLEWD----------KLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE--MQKHGSCSLDLTGV 119 (844)
Q Consensus 52 ~~l~~Le~~----------~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~--~~~~~~~~~~~~~i 119 (844)
.|++.||+- .+...+.. |.|++|++.++.|+..|..+.++++.+++.+.++.. .+. .+....+.++
T Consensus 2 ~Tl~~L~i~~~~~~~~~~~sL~~~ln~-t~T~~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~n~~~~-~~~~~~l~~~ 79 (204)
T PF05192_consen 2 NTLKSLEIFENSRSGKKKGSLFSLLNR-TSTPMGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQNEELR-EELRSILKKI 79 (204)
T ss_dssp HHHHHTTSSSBTTTSSSSTSHHHHH----SSHHHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHHTHHHH-HHHHHHHTTC
T ss_pred hhHHhccCCCCCCCCCCCCcHHHHHhc-CCChHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhhhHh-hhhhhhhhcc
Confidence 355566655 68888855 999999999999544446899999999999999996 111 1112235666
Q ss_pred CchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHccccCc
Q 003142 120 DLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQVVDE 199 (844)
Q Consensus 120 ~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~i~~~id~ 199 (844)
. |+...+.++..|. .++.++..+..++..+..+++++.. .+...|.|..+...+.++..+.+.|..+||+
T Consensus 80 ~--di~~~l~~l~~~~-~~~~~~~~l~~~l~~~~~i~~~~~~-------~~~~~~~L~~l~~~l~~~~~l~~~i~~~id~ 149 (204)
T PF05192_consen 80 P--DIERILKRLRSGR-ASPQDLLKLYKTLRSIIEIKKLLSE-------RLESSPLLRKLLSSLPDFSELLDEIESTIDE 149 (204)
T ss_dssp ---SHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHHHC-------TSSSTHHHHHHHHHHCSHHHHHHHHHHHBHT
T ss_pred c--hHHHHHHHHHHhh-cChHHHHHHHHHHHHHHHHHHHHHh-------hcccHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 6 5888899887764 4899999999999999988765321 1112256788888888788899999999988
Q ss_pred CCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccEEeeCCEEEEEecCCccccccEEeecccCCeEEEe
Q 003142 200 DGSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQLSFKGLLLSSSSGIGSVIE 279 (844)
Q Consensus 200 ~G~v~D~AS~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~r~gr~vi~v~~~~~~~~giv~~S~sG~t~~iE 279 (844)
++...+..+..++.
T Consensus 150 ~~~~~~~~~~~I~~------------------------------------------------------------------ 163 (204)
T PF05192_consen 150 DKSLAIREQDIIRD------------------------------------------------------------------ 163 (204)
T ss_dssp S-CCHCTTSSSBST------------------------------------------------------------------
T ss_pred CcHHHHhcccHHHH------------------------------------------------------------------
Confidence 64332222210000
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 003142 280 PLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARAT 337 (844)
Q Consensus 280 P~~~v~lnn~l~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a~ 337 (844)
+..++.+|+.+|+..+.++.+.|..+++++++||+++|+|+
T Consensus 164 -----------------~~~~~~~i~~~L~~~i~~~~~~l~~~~~~i~eLD~l~s~A~ 204 (204)
T PF05192_consen 164 -----------------INDEEQRILRELTNEIRKYSPELRELSEAIAELDVLISFAK 204 (204)
T ss_dssp -----------------HHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 78889999999999999999999999999999999999986
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.27 E-value=1.5e-11 Score=136.74 Aligned_cols=136 Identities=21% Similarity=0.229 Sum_probs=100.6
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc-----------------------------------------ccccc
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-----------------------------------------HILSS 491 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~-----------------------------------------~vpa~ 491 (844)
.+|++++|+||||-||||.+|++++..... .|- .+|..
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PN-LG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPN-LGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccC-CCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 689999999999999999999996532211 010 01100
Q ss_pred c----------ccccchhHHHhhhCCchhhHhhhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHH
Q 003142 492 E----------YAKVPWFDSVFADIGDEQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSL 560 (844)
Q Consensus 492 ~----------~~~i~~~~~i~~~ig~~q~i~~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~I 560 (844)
- ....+.++.+...+++...+...++.+|| ++|+++.+++++.+.++.++|||++-||..++...+..
T Consensus 177 ~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~- 255 (591)
T COG1245 177 VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV- 255 (591)
T ss_pred hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHH-
Confidence 0 01123455667777888888888999997 67888888889999999999999999999999998764
Q ss_pred HHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003142 561 LEAFAESGSLLTIATTHHGELKTLKYSNDFF 591 (844)
Q Consensus 561 le~L~~~g~t~vIitTHd~el~~~a~~~~~v 591 (844)
++.|.+.+.+ ||++.||+....|-.+.+.+
T Consensus 256 Irel~~~~k~-ViVVEHDLavLD~lsD~vhI 285 (591)
T COG1245 256 IRELAEDGKY-VIVVEHDLAVLDYLSDFVHI 285 (591)
T ss_pred HHHHhccCCe-EEEEechHHHHHHhhheeEE
Confidence 4556666787 99999998887654444333
No 408
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.25 E-value=3.6e-11 Score=148.39 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=68.5
Q ss_pred HhhhhhhhhHHh-hHHHHHHHhCCCC---cEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003142 512 LSQSLSTFSGHL-KQIGNIISQSTSQ---SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587 (844)
Q Consensus 512 i~~~lstfS~~~-~rl~~il~~a~~p---~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~ 587 (844)
+.+...++|+++ +++..+.+++.+| +|+||||||+|||+.+...+.. ++..+.+.|.| ||++||+.++...|+.
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~-~L~~l~~~G~T-VIiitH~~~~i~~aD~ 901 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLE-VLHRLVDKGNT-VVVIEHNLDVIKTADW 901 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHH-HHHHHHhCCCE-EEEEecCHHHHHhCCE
Confidence 344556788766 5556666677777 9999999999999988888764 56667778887 9999999988888998
Q ss_pred ccce------eeeEEEEec
Q 003142 588 NDFF------ENACMEFDE 600 (844)
Q Consensus 588 ~~~v------~ng~v~fd~ 600 (844)
+..+ .+|.+.+.+
T Consensus 902 ii~Lgp~~G~~~G~Iv~~G 920 (943)
T PRK00349 902 IIDLGPEGGDGGGEIVATG 920 (943)
T ss_pred EEEecCCcCCCCCEEEEeC
Confidence 8888 578887654
No 409
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.23 E-value=4.1e-11 Score=154.02 Aligned_cols=92 Identities=18% Similarity=0.167 Sum_probs=68.9
Q ss_pred CCchhh-HhhhhhhhhHHhhHHHHHH-HhC---CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003142 506 IGDEQS-LSQSLSTFSGHLKQIGNII-SQS---TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580 (844)
Q Consensus 506 ig~~q~-i~~~lstfS~~~~rl~~il-~~a---~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~e 580 (844)
+|.... ..+...++|+++++...+. +++ .+|+++||||||+|||+.+...+. .++..+.+.|.| ||++||+++
T Consensus 796 vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~~G~T-VIiIsHdl~ 873 (1809)
T PRK00635 796 LGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALI-YVLQSLTHQGHT-VVIIEHNMH 873 (1809)
T ss_pred cCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHH
Confidence 344332 4556677888766555444 443 689999999999999998888876 456677888887 999999998
Q ss_pred HHhhhcccccee------eeEEEEe
Q 003142 581 LKTLKYSNDFFE------NACMEFD 599 (844)
Q Consensus 581 l~~~a~~~~~v~------ng~v~fd 599 (844)
+..+|+++..+. +|.+.+.
T Consensus 874 ~i~~aDrVi~L~p~gg~~~G~iv~~ 898 (1809)
T PRK00635 874 VVKVADYVLELGPEGGNLGGYLLAS 898 (1809)
T ss_pred HHHhCCEEEEEccCCCCCCCEEEEe
Confidence 888899888774 5666554
No 410
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.2e-11 Score=139.32 Aligned_cols=147 Identities=17% Similarity=0.162 Sum_probs=95.5
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchh-----------------------
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWF----------------------- 499 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~----------------------- 499 (844)
.+...++++ .-..-++++|+||.||||+||++.+ ..-+..|...-. ....+.+|
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~-~l~~~rgi~~~~-~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~p 455 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKG-DLTPTRGIVGRH-PRLRIKYFAQHHVDFLDKNVNAVDFMEKSFP 455 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhc-cCCcccceeeec-ccceecchhHhhhhHHHHHhHHHHHHHHhCC
Confidence 344455555 2222368999999999999999832 111111111000 11122221
Q ss_pred -------HHHhhhCCchhhH-hhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe
Q 003142 500 -------DSVFADIGDEQSL-SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL 570 (844)
Q Consensus 500 -------~~i~~~ig~~q~i-~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t 570 (844)
...+..+|+...+ .+.+.++||++ .+++.+.....+|.||+|||||+.||.....+++ +.|...++.
T Consensus 456 G~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~----~Al~~F~GG 531 (582)
T KOG0062|consen 456 GKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALA----KALKNFNGG 531 (582)
T ss_pred CCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHH----HHHHhcCCc
Confidence 2234556654333 34567788866 5666667778999999999999999986665555 455566665
Q ss_pred EEEEEccchhHHh-hhccccceeeeEEE
Q 003142 571 LTIATTHHGELKT-LKYSNDFFENACME 597 (844)
Q Consensus 571 ~vIitTHd~el~~-~a~~~~~v~ng~v~ 597 (844)
||+||||.+|.. +|.....+.+|.|.
T Consensus 532 -Vv~VSHd~~fi~~~c~E~Wvve~g~vt 558 (582)
T KOG0062|consen 532 -VVLVSHDEEFISSLCKELWVVEDGKVT 558 (582)
T ss_pred -EEEEECcHHHHhhcCceeEEEcCCcEE
Confidence 899999999985 88889999999884
No 411
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.20 E-value=4.3e-11 Score=139.62 Aligned_cols=146 Identities=17% Similarity=0.130 Sum_probs=94.9
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcc---------ccccccccccccch------------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS---------GLHILSSEYAKVPW------------ 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~---------G~~vpa~~~~~i~~------------ 498 (844)
++++..+++++. ++|+-+.|+||||||||||+|+|+++..-... -+|+|+......+-
T Consensus 404 ~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~ 483 (604)
T COG4178 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAP 483 (604)
T ss_pred CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCC
Confidence 445777888888 77888999999999999999999876433221 13334321111110
Q ss_pred ------hHHHhhhCCchhhHhh------hhhhhh-HHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 003142 499 ------FDSVFADIGDEQSLSQ------SLSTFS-GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565 (844)
Q Consensus 499 ------~~~i~~~ig~~q~i~~------~lstfS-~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~ 565 (844)
..+++...|..+-+.. .-..+| |++||++.+..+.++|++++|||-|+++|+..-..+...+.+.|
T Consensus 484 ~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l- 562 (604)
T COG4178 484 DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL- 562 (604)
T ss_pred CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-
Confidence 1122333333322211 112233 57788888888999999999999999999966555543333322
Q ss_pred hcCCeEEEEEccchhHHhhhcccc
Q 003142 566 ESGSLLTIATTHHGELKTLKYSND 589 (844)
Q Consensus 566 ~~g~t~vIitTHd~el~~~a~~~~ 589 (844)
.++| ||-|+|-..+..+..+..
T Consensus 563 -p~~t-vISV~Hr~tl~~~h~~~l 584 (604)
T COG4178 563 -PDAT-VISVGHRPTLWNFHSRQL 584 (604)
T ss_pred -CCCE-EEEeccchhhHHHHhhhe
Confidence 4676 999999998887766543
No 412
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=6.4e-11 Score=130.51 Aligned_cols=75 Identities=15% Similarity=0.085 Sum_probs=56.5
Q ss_pred hhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeee
Q 003142 517 STFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENA 594 (844)
Q Consensus 517 stfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng 594 (844)
..|||+. .|+..+.++...|.||+|||||+.||.. +++ .+-.+|.....| +++||||..|. ..|..++.+.+.
T Consensus 411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLN---AVI-WLdNYLQgWkKT-LLIVSHDQgFLD~VCtdIIHLD~q 485 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLN---AVI-WLDNYLQGWKKT-LLIVSHDQGFLDSVCTDIIHLDNQ 485 (807)
T ss_pred cccCCceeeehhHHHHHhcCceeeeecCCccccccc---eee-ehhhHHhhhhhe-eEEEecccchHHHHHHHHhhhhhh
Confidence 3466653 4677777888999999999999999973 333 356677777787 89999998887 478877777554
Q ss_pred EE
Q 003142 595 CM 596 (844)
Q Consensus 595 ~v 596 (844)
.+
T Consensus 486 kL 487 (807)
T KOG0066|consen 486 KL 487 (807)
T ss_pred hh
Confidence 44
No 413
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.17 E-value=1.2e-10 Score=130.02 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=101.7
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhH--------H-------------Hhhccccccccccccccc-
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA--------V-------------MMAKSGLHILSSEYAKVP- 497 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l--------~-------------~~~q~G~~vpa~~~~~i~- 497 (844)
.+++|..|++|. .+|+.++|+||+|+||||+||++--+ . +-.+.| .+|+ +..-+.
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG-VVPQ-DtvLFNd 626 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG-VVPQ-DTVLFND 626 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC-cccC-cceeecc
Confidence 578999999999 89999999999999999999998321 1 111222 3444 111000
Q ss_pred -hh------------HHHhhh---CCchhhHh------------hhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCC
Q 003142 498 -WF------------DSVFAD---IGDEQSLS------------QSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGT 548 (844)
Q Consensus 498 -~~------------~~i~~~---ig~~q~i~------------~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGl 548 (844)
++ +.+++. -+..+.+. .++. +|| +.+|++.+...+..|.++||||.||+|
T Consensus 627 TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSAL 705 (790)
T KOG0056|consen 627 TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSAL 705 (790)
T ss_pred eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhc
Confidence 00 111110 01112221 2222 344 566777777789999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 549 Dp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
|...-.++- +-+..+.. +.| .|++-|...-..-||.+..+.||++...+
T Consensus 706 DT~tER~IQ-aaL~rlca-~RT-tIVvAHRLSTivnAD~ILvi~~G~IvErG 754 (790)
T KOG0056|consen 706 DTNTERAIQ-AALARLCA-NRT-TIVVAHRLSTIVNADLILVISNGRIVERG 754 (790)
T ss_pred CCccHHHHH-HHHHHHhc-CCc-eEEEeeeehheecccEEEEEeCCeEeecC
Confidence 997777664 44555554 444 68888988877789999999999997543
No 414
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.14 E-value=1.7e-10 Score=142.21 Aligned_cols=155 Identities=16% Similarity=0.171 Sum_probs=101.8
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------ccccccccc--c
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAK--V 496 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~~~~~--i 496 (844)
.+.+|++|++|+ ..|+.++|+||+||||||.+-+|-- .|.+..|. .|.+ +..- -
T Consensus 1001 P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeR-fYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQ-EP~LF~~ 1078 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLER-FYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQ-EPVLFNG 1078 (1228)
T ss_pred CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHH-hcCCCCCeEEECCcccccCCHHHHHHhcceecc-Cchhhcc
Confidence 456799999999 8899999999999999999888721 11111111 0111 0000 0
Q ss_pred chhHHHhhh---C------------CchhhHh---hhh--------hhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCC
Q 003142 497 PWFDSVFAD---I------------GDEQSLS---QSL--------STFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 497 ~~~~~i~~~---i------------g~~q~i~---~~l--------stfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlD 549 (844)
.+.+++.-. + +..+.+. +++ ..+||+ .||++.+.+++.+|++|||||-||+||
T Consensus 1079 TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALD 1158 (1228)
T KOG0055|consen 1079 TIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALD 1158 (1228)
T ss_pred cHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhh
Confidence 011111100 0 0000010 111 235664 567777788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
. +...+...-++... .|.| +|++.|-+...+-||.+..+.||.+...+
T Consensus 1159 s-eSErvVQeALd~a~-~gRT-~IvIAHRLSTIqnaD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1159 S-ESERVVQEALDRAM-EGRT-TIVIAHRLSTIQNADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred h-hhHHHHHHHHHHhh-cCCc-EEEEecchhhhhcCCEEEEEECCEEEecc
Confidence 8 55555566666644 4676 79999999999999999999999997543
No 415
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.13 E-value=2e-10 Score=116.70 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=103.6
Q ss_pred CCchhhhhhccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------c----------c--ccc
Q 003142 430 SPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------S----------G--LHI 488 (844)
Q Consensus 430 ~~~~~~~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------~----------G--~~v 488 (844)
.+..+..++- ...++..||+++ +.|.-..++|.||+|||||||++++-.+... . | +|.
T Consensus 15 evsgl~f~y~-~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YL 93 (291)
T KOG2355|consen 15 EVSGLQFKYK-VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYL 93 (291)
T ss_pred EEeccEEecc-cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEe
Confidence 3444444442 234788899998 6666689999999999999999965322110 0 0 000
Q ss_pred -------ccccccc------cchhHHHhhhCCchh-----hHhh--------hhhhhhHHhhHHH-HHHHhCCCCcEEEE
Q 003142 489 -------LSSEYAK------VPWFDSVFADIGDEQ-----SLSQ--------SLSTFSGHLKQIG-NIISQSTSQSLVLL 541 (844)
Q Consensus 489 -------pa~~~~~------i~~~~~i~~~ig~~q-----~i~~--------~lstfS~~~~rl~-~il~~a~~p~LLLL 541 (844)
+. -... ++.. .++..++-.+ .+.. .+-..|.+++|.. ..+.++.+=.+|||
T Consensus 94 GgeW~~~~~-~agevplq~D~sae-~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLL 171 (291)
T KOG2355|consen 94 GGEWSKTVG-IAGEVPLQGDISAE-HMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLL 171 (291)
T ss_pred ccccccccc-ccccccccccccHH-HHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEe
Confidence 00 0001 1111 1111121111 1100 1123344555444 44556677799999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccc-hhHHhhhccccceeeeEEE
Q 003142 542 DEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH-GELKTLKYSNDFFENACME 597 (844)
Q Consensus 542 DEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd-~el~~~a~~~~~v~ng~v~ 597 (844)
||.|--||...++.+...+.++...+|+| |+..||. ..+...+.+...+.+|.+.
T Consensus 172 DEVTVDLDVlARadLLeFlkeEce~Rgat-IVYATHIFDGLe~Wpthl~yi~~Gkl~ 227 (291)
T KOG2355|consen 172 DEVTVDLDVLARADLLEFLKEECEQRGAT-IVYATHIFDGLETWPTHLVYIKSGKLV 227 (291)
T ss_pred eeeEeehHHHHHHHHHHHHHHHHhhcCcE-EEEEeeeccchhhcchhEEEecCCeee
Confidence 99999999999998887777777778997 9999997 5677899999999999886
No 416
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.11 E-value=4.1e-10 Score=124.12 Aligned_cols=142 Identities=20% Similarity=0.232 Sum_probs=100.3
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh-------hcccc----------cccccccc---ccchh
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM-------AKSGL----------HILSSEYA---KVPWF 499 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~-------~q~G~----------~vpa~~~~---~i~~~ 499 (844)
...++..|++|. .+|++++|+|++|+||||+|++|.+.... +..|. .+|..... ...+.
T Consensus 394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~til 473 (593)
T COG2401 394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTIL 473 (593)
T ss_pred eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHH
Confidence 346789999999 89999999999999999999999665432 11121 12321111 22345
Q ss_pred HHHhhhCCchh---hH------------hhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHH
Q 003142 500 DSVFADIGDEQ---SL------------SQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 563 (844)
Q Consensus 500 ~~i~~~ig~~q---~i------------~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~ 563 (844)
+++....|+-. -+ -..++.+|.+++ +...+..++..|++++.||..+.||+.....++..|-+.
T Consensus 474 ehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisel 553 (593)
T COG2401 474 EHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL 553 (593)
T ss_pred HHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHH
Confidence 55655555511 11 112344555554 455555567899999999999999999999999888887
Q ss_pred HHhcCCeEEEEEccchhHHh
Q 003142 564 FAESGSLLTIATTHHGELKT 583 (844)
Q Consensus 564 L~~~g~t~vIitTHd~el~~ 583 (844)
-++.|.| ++++||..++..
T Consensus 554 aRe~giT-livvThrpEv~~ 572 (593)
T COG2401 554 AREAGIT-LIVVTHRPEVGN 572 (593)
T ss_pred HHHhCCe-EEEEecCHHHHh
Confidence 7788997 999999999884
No 417
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.10 E-value=9.7e-10 Score=109.92 Aligned_cols=80 Identities=15% Similarity=0.058 Sum_probs=65.9
Q ss_pred HHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccch-hHHhhhccccceeeeEEEEe
Q 003142 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG-ELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 521 ~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~-el~~~a~~~~~v~ng~v~fd 599 (844)
++.+|++.+.+++.+|+++|.||..++||..-...+....++.-.+.|.+ .|.+|.+. -++.++|.+..+..|.|...
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiS-yiYV~QhlG~iKHi~D~viVM~EG~vvE~ 231 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGIS-YIYVTQHIGMIKHISDQVLVMHEGEVVER 231 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCce-EEEEechhhHhhhhcccEEEEecCceeec
Confidence 46678888889999999999999999999988888888777766667887 77777665 45579999999998988755
Q ss_pred cc
Q 003142 600 EV 601 (844)
Q Consensus 600 ~~ 601 (844)
+.
T Consensus 232 G~ 233 (267)
T COG4167 232 GS 233 (267)
T ss_pred CC
Confidence 43
No 418
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.09 E-value=6.3e-11 Score=145.87 Aligned_cols=157 Identities=14% Similarity=0.138 Sum_probs=94.5
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh-------ccccccccccc-ccc---------------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------KSGLHILSSEY-AKV--------------- 496 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-------q~G~~vpa~~~-~~i--------------- 496 (844)
+.+.+++|++=- .+|.+++|+|++||||||||++|++-.-+. -.|.+.+.... ...
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 344566666644 788999999999999999999996432110 01222221000 011
Q ss_pred ----------------------chhHHHhhhCCchhhHhhhh----hhhhHHhh-HHHHHHHhCCCC-cEEEEecCCCCC
Q 003142 497 ----------------------PWFDSVFADIGDEQSLSQSL----STFSGHLK-QIGNIISQSTSQ-SLVLLDEIGAGT 548 (844)
Q Consensus 497 ----------------------~~~~~i~~~ig~~q~i~~~l----stfS~~~~-rl~~il~~a~~p-~LLLLDEP~sGl 548 (844)
.+++++..-+++.+..+.-. +.+|.+++ |+.....++.+| .||+||||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 12233333333332211111 22444443 333344567788 999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEccchhH--Hhhhcccccee-eeEEEEe
Q 003142 549 NPLEGTALGMSLLEAFAESGSLLTIATTHHGEL--KTLKYSNDFFE-NACMEFD 599 (844)
Q Consensus 549 Dp~~~~al~~~Ile~L~~~g~t~vIitTHd~el--~~~a~~~~~v~-ng~v~fd 599 (844)
|...... ...+++.+.+.|.+ ||+|-|.+.. .+.-|+...+. .|++.|-
T Consensus 962 DsqaA~~-i~~~lrkla~tGqt-IlCTIHQPS~~ife~FD~LLLLkrGGqtVY~ 1013 (1391)
T KOG0065|consen 962 DSQAAAI-VMRFLRKLADTGQT-ILCTIHQPSIDIFEAFDELLLLKRGGQTVYF 1013 (1391)
T ss_pred cHHHHHH-HHHHHHHHHhcCCe-EEEEecCCcHHHHHHHhHHHHHhcCCeEEEe
Confidence 9855554 45788889999998 9999998643 34556555554 4666653
No 419
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=5.8e-10 Score=120.89 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=54.4
Q ss_pred hhHHhhHHHH-HHHh--CC--CCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceee
Q 003142 519 FSGHLKQIGN-IISQ--ST--SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFEN 593 (844)
Q Consensus 519 fS~~~~rl~~-il~~--a~--~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~n 593 (844)
+|+++++... ++.. +. +|+++|||||++|+|+.....+...+ ..+.. +.+ +|++||+..+..+|+++..+.+
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l-~~~~~-~~t-ii~isH~~~~~~~~d~~~~l~~ 247 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKL-KELSR-SHQ-VLCITHLPQVAAMADNHFLVEK 247 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHH-HHHhC-CCE-EEEEechHHHHHhcCcEEEEEE
Confidence 5666655433 3332 22 99999999999999998888776544 44443 666 9999999988889988877766
Q ss_pred eE
Q 003142 594 AC 595 (844)
Q Consensus 594 g~ 595 (844)
+.
T Consensus 248 ~~ 249 (276)
T cd03241 248 EV 249 (276)
T ss_pred ec
Confidence 53
No 420
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.99 E-value=1.5e-09 Score=122.74 Aligned_cols=142 Identities=18% Similarity=0.166 Sum_probs=91.3
Q ss_pred cCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcc---------ccccccccccccch-hHHH------
Q 003142 440 ELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS---------GLHILSSEYAKVPW-FDSV------ 502 (844)
Q Consensus 440 ~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~---------G~~vpa~~~~~i~~-~~~i------ 502 (844)
+.+.+|...++|. .+|--+.|+||||||||.|+|++|++....+. -+|+|+.+....+- -|++
T Consensus 492 P~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~ 571 (728)
T KOG0064|consen 492 PAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSS 571 (728)
T ss_pred cCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcH
Confidence 3567788888998 77888999999999999999999987544322 23344422211110 0111
Q ss_pred --hh--hCCc---------------------hhhHhhhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 503 --FA--DIGD---------------------EQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 503 --~~--~ig~---------------------~q~i~~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
+. .+++ .+.+..+-.-+|| +.||+..+...-+.|...+|||-|++..+ +..
T Consensus 572 e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsi-dvE-- 648 (728)
T KOG0064|consen 572 EQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSI-DVE-- 648 (728)
T ss_pred HHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhccccc-chH--
Confidence 00 1111 1111112223444 55666666777899999999999999988 333
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHHhhhc
Q 003142 557 GMSLLEAFAESGSLLTIATTHHGELKTLKY 586 (844)
Q Consensus 557 ~~~Ile~L~~~g~t~vIitTHd~el~~~a~ 586 (844)
..+.+..++.|.+ .|-+||.+.+-.|-.
T Consensus 649 -~~i~~~ak~~gi~-llsithrpslwk~h~ 676 (728)
T KOG0064|consen 649 -GKIFQAAKDAGIS-LLSITHRPSLWKYHT 676 (728)
T ss_pred -HHHHHHHHhcCce-EEEeecCccHHHHHH
Confidence 2345666788997 899999988876543
No 421
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.98 E-value=2.1e-09 Score=123.01 Aligned_cols=145 Identities=16% Similarity=0.112 Sum_probs=99.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc------------cccccccccccccchh---------
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------SGLHILSSEYAKVPWF--------- 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q------------~G~~vpa~~~~~i~~~--------- 499 (844)
+..+..++++. ..|.-+.|+||||||||.|||++|++....+ .-+|+|+.+...++-.
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 56677779999 8888899999999999999999987653211 1234554332221100
Q ss_pred --------------H---------HHhhhCCch--hhHhhhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 500 --------------D---------SVFADIGDE--QSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 500 --------------~---------~i~~~ig~~--q~i~~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
. .+..+.|-. +....+...+|+ ++||+..+.....+|.+-+|||-|+++|. +.
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~-dv 605 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTE-DV 605 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccH-HH
Confidence 0 112222222 244555667774 78888888888999999999999999997 33
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003142 554 TALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591 (844)
Q Consensus 554 ~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v 591 (844)
. .++-+.+++.|.| .|-|+|-..+..+-+-...+
T Consensus 606 E---~~~Yr~~r~~giT-~iSVgHRkSL~kfHd~~L~~ 639 (659)
T KOG0060|consen 606 E---GALYRKCREMGIT-FISVGHRKSLWKFHDYVLRM 639 (659)
T ss_pred H---HHHHHHHHHcCCe-EEEeccHHHHHhhhhEEEEe
Confidence 3 2344566778997 99999999988776544443
No 422
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.94 E-value=2.9e-09 Score=134.12 Aligned_cols=156 Identities=16% Similarity=0.177 Sum_probs=108.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-----cc--ccccccc---cccc------------ch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG--LHILSSE---YAKV------------PW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-----~G--~~vpa~~---~~~i------------~~ 498 (844)
..+.+.|++|. +.|+.++|+||=|||||+||.+|.+-..+.. .| .|+|+.. +..+ ..
T Consensus 533 ~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~~~d~~r 612 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGSPYDEER 612 (1381)
T ss_pred CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCccccHHH
Confidence 44589999999 8999999999999999999999843211110 11 1233200 0000 01
Q ss_pred hHHHhhhCCchhhHh-----------hhhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 003142 499 FDSVFADIGDEQSLS-----------QSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE 566 (844)
Q Consensus 499 ~~~i~~~ig~~q~i~-----------~~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~ 566 (844)
++++........+++ ..=-++||+ .+|+..+.+.-.+++++|||-|+|++|.+-+..+....+..+.
T Consensus 613 Y~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L- 691 (1381)
T KOG0054|consen 613 YDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL- 691 (1381)
T ss_pred HHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-
Confidence 122222222222222 111246665 4677888888999999999999999999999999988885544
Q ss_pred cCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 567 SGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 567 ~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
++.| +|++||..++..-||.+..+.||++...
T Consensus 692 ~~KT-~ILVTHql~~L~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 692 RGKT-VILVTHQLQFLPHADQIIVLKDGKIVES 723 (1381)
T ss_pred cCCE-EEEEeCchhhhhhCCEEEEecCCeEecc
Confidence 4566 8999999999999999999999999643
No 423
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=5.2e-09 Score=116.16 Aligned_cols=152 Identities=15% Similarity=0.162 Sum_probs=100.6
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------ccccccccccch
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKVPW 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~~~~~i~~ 498 (844)
+.+++++++++. +.|+.++|+||.|+||||+++.+--+ +..++|. .+|.+ .. -+
T Consensus 274 ~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRF-yD~~sG~I~id~qdir~vtq~slR~aIg~VPQD-tv--LF 349 (497)
T COG5265 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF-YDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQD-TV--LF 349 (497)
T ss_pred ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHH-hCCcCceEEEcchhHHHhHHHHHHHHhCcCccc-ce--eh
Confidence 467889999999 88999999999999999999998321 2222221 23331 10 01
Q ss_pred hHHHhhhCC-------------------chhhHh------------hhhhhhh-HHhhHHHHHHHhCCCCcEEEEecCCC
Q 003142 499 FDSVFADIG-------------------DEQSLS------------QSLSTFS-GHLKQIGNIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 499 ~~~i~~~ig-------------------~~q~i~------------~~lstfS-~~~~rl~~il~~a~~p~LLLLDEP~s 546 (844)
.|.++..+. ..+.+. .++ ..| |+.||++.+...+.+|++++|||.||
T Consensus 350 NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl-klSggekqrvaiar~ilk~p~il~~deats 428 (497)
T COG5265 350 NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL-KLSGGEKQRVAIARTILKNPPILILDEATS 428 (497)
T ss_pred hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee-eccCchHHHHHHHHHHhcCCCEEEEehhhh
Confidence 111111110 001111 111 123 46677777778899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 547 GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 547 GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
+||...-.++-.+ ++.+. .|.| .+++-|-..-..-||.++.+.||.+...+
T Consensus 429 aldt~te~~iq~~-l~~~~-~~rt-tlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 429 ALDTHTEQAIQAA-LREVS-AGRT-TLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred HhhhhHHHHHHHH-HHHHh-CCCe-EEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 9999777766443 44433 5676 78889988877889999999999997543
No 424
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.87 E-value=1.5e-08 Score=105.62 Aligned_cols=71 Identities=23% Similarity=0.205 Sum_probs=45.0
Q ss_pred hhhHHhhHHHHHH-----HhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003142 518 TFSGHLKQIGNII-----SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591 (844)
Q Consensus 518 tfS~~~~rl~~il-----~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v 591 (844)
.+|++.+.+..+. ....+.+++|||||.++||+.....++. ++..+.+ ..- +|+|||+..+...|+...+|
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~-~l~~~~~-~~Q-~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLAD-LLKELSK-QSQ-FIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHH-HHHHHTT-TSE-EEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-ccccccc-ccc-cccccccccccccccccccc
Confidence 5677665543332 2357889999999999999988777764 4444443 354 89999999999888776655
No 425
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.83 E-value=1e-08 Score=103.24 Aligned_cols=64 Identities=25% Similarity=0.269 Sum_probs=49.7
Q ss_pred hHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhh
Q 003142 520 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585 (844)
Q Consensus 520 S~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a 585 (844)
|.+.--+..+.......-+.|||||-++|.|.-...++ +++..+.+.|.- +|++||.+-+..+.
T Consensus 131 SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlell-a~l~~la~sGaQ-~IiATHSPiLlAiP 194 (233)
T COG3910 131 SHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELL-AILRDLADSGAQ-IIIATHSPILLAIP 194 (233)
T ss_pred ccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHH-HHHHHHHhcCCe-EEEEecChhheeCC
Confidence 33333355555667899999999999999997777765 788889999986 99999998776443
No 426
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.82 E-value=1.3e-08 Score=131.48 Aligned_cols=75 Identities=23% Similarity=0.103 Sum_probs=60.5
Q ss_pred hhhhhhH-HhhHHHHHHHhCC---CCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccc
Q 003142 515 SLSTFSG-HLKQIGNIISQST---SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590 (844)
Q Consensus 515 ~lstfS~-~~~rl~~il~~a~---~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~ 590 (844)
...++|| +.||+..+..+.. .+.|++|||||+||++.+...+. .+++.|.+.|.| ||++.||.++...||.++-
T Consensus 1696 ~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~~g~t-vivieH~~~~i~~aD~iid 1773 (1809)
T PRK00635 1696 NLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVSLGHS-VIYIDHDPALLKQADYLIE 1773 (1809)
T ss_pred cCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHhcCCe-EEEEeCCHHHHHhCCEEEE
Confidence 3446666 5677777766654 37899999999999999999986 567889999998 9999999999988886654
Q ss_pred e
Q 003142 591 F 591 (844)
Q Consensus 591 v 591 (844)
+
T Consensus 1774 l 1774 (1809)
T PRK00635 1774 M 1774 (1809)
T ss_pred c
Confidence 4
No 427
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.81 E-value=1.5e-08 Score=116.47 Aligned_cols=150 Identities=18% Similarity=0.161 Sum_probs=101.3
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------ccc-cccccccccc------c
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSG-LHILSSEYAK------V 496 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~G-~~vpa~~~~~------i 496 (844)
...|++|+ ..|+|++|.|==|+|+|=++++|.+..-.. ..| .|+|. .... .
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~E-DRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPE-DRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCc-ccccCcCcCCC
Confidence 45677888 889999999999999999999996532110 011 13332 1110 0
Q ss_pred chhHHH--------------------------hhhCCc-hhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCC
Q 003142 497 PWFDSV--------------------------FADIGD-EQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGT 548 (844)
Q Consensus 497 ~~~~~i--------------------------~~~ig~-~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGl 548 (844)
++.+++ ...++. ..+..+..+++||+-|+ +.....++.+|++|||||||.|.
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 111110 111111 11233455678876554 55555678999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEccc-hhHHhhhccccceeeeEEE
Q 003142 549 NPLEGTALGMSLLEAFAESGSLLTIATTHH-GELKTLKYSNDFFENACME 597 (844)
Q Consensus 549 Dp~~~~al~~~Ile~L~~~g~t~vIitTHd-~el~~~a~~~~~v~ng~v~ 597 (844)
|......+. .++..|..+|.+ ||++|-+ .|+..+||++..+.+|.+.
T Consensus 433 DVGAK~eIy-~li~~lA~~G~a-il~iSSElpEll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 433 DVGAKAEIY-RLIRELAAEGKA-ILMISSELPELLGLSDRILVMREGRIV 480 (500)
T ss_pred ccchHHHHH-HHHHHHHHCCCE-EEEEeCChHHHHhhCCEEEEEECCEEE
Confidence 998888875 678889999998 5655554 6788899999999999985
No 428
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.79 E-value=1.9e-08 Score=108.71 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=38.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhh---ccccceeeeEE
Q 003142 533 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK---YSNDFFENACM 596 (844)
Q Consensus 533 a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a---~~~~~v~ng~v 596 (844)
..+|+++|||||++++||.....+. +.+.+.+.+ +|++||...+..++ .++..+.+|.|
T Consensus 208 ~~~~~illlDEp~a~LD~~~~~~l~----~~l~~~~q~-ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 208 SGEYPVLLLDDVLAELDLGRQAALL----DAIEGRVQT-FVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred hCCCcEEEEcCcchhcCHHHHHHHH----HHhhcCCCE-EEEeCCchhccchhccCccEEEEeCcEE
Confidence 4799999999999999996666554 333334443 55555555555666 44555556554
No 429
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.77 E-value=4.3e-08 Score=100.07 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=57.5
Q ss_pred HHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEE
Q 003142 521 GHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACM 596 (844)
Q Consensus 521 ~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v 596 (844)
|+-+++..+++.+..|.|||-||||+.++|.....+. .++..+.+...|+|++++||.... .+|+++-.+.-|.-
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~Qif-RLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~ 237 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIF-RLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQT 237 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHH-HHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccc
Confidence 4556677777889999999999999999998888776 466666655444599999997655 79988876665543
No 430
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.74 E-value=2.6e-08 Score=117.88 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=58.5
Q ss_pred hhhhhhH-HhhHHHHHHHh---CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003142 515 SLSTFSG-HLKQIGNIISQ---STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589 (844)
Q Consensus 515 ~lstfS~-~~~rl~~il~~---a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~ 589 (844)
...|+|| +.||+.++..+ .+...|.||||||+||-+.+...+. .++..|.+.|.| ||++-|+++...-||.++
T Consensus 819 patTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd~GnT-ViVIEHNLdVIk~AD~II 895 (935)
T COG0178 819 PATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVDKGNT-VIVIEHNLDVIKTADWII 895 (935)
T ss_pred ccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHhCCCE-EEEEecccceEeecCEEE
Confidence 4456676 56777766654 5677999999999999999999886 577889999998 999999998876665443
No 431
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.69 E-value=4.8e-08 Score=123.38 Aligned_cols=160 Identities=16% Similarity=0.110 Sum_probs=106.0
Q ss_pred hhhhhccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh------------hccc--------ccccccc
Q 003142 434 MQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM------------AKSG--------LHILSSE 492 (844)
Q Consensus 434 ~~~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~------------~q~G--------~~vpa~~ 492 (844)
..+.+.++...|++++++. .+|+-+||+|.-|||||||+.++--+... .+.| ..+|+++
T Consensus 1144 ~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdP 1223 (1381)
T KOG0054|consen 1144 LSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDP 1223 (1381)
T ss_pred eEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCC
Confidence 3566667777899999999 88888999999999999999988433221 1112 1244421
Q ss_pred c-------cccchhH-----HH---hhhCC-----------chhhHhhhhhhhhHHhhHHHH-HHHhCCCCcEEEEecCC
Q 003142 493 Y-------AKVPWFD-----SV---FADIG-----------DEQSLSQSLSTFSGHLKQIGN-IISQSTSQSLVLLDEIG 545 (844)
Q Consensus 493 ~-------~~i~~~~-----~i---~~~ig-----------~~q~i~~~lstfS~~~~rl~~-il~~a~~p~LLLLDEP~ 545 (844)
. ..+..|+ ++ +.... .+..+..+=+.||.+++++.. +.+++.+.++|+|||.|
T Consensus 1224 vLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEAT 1303 (1381)
T KOG0054|consen 1224 VLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEAT 1303 (1381)
T ss_pred ceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccc
Confidence 1 0111111 11 11111 222223333567877766544 45678999999999999
Q ss_pred CCCCHHHHHHHHHHHHH-HHHhcCCeEEEEEccchhHHhhhccccceeeeEEE
Q 003142 546 AGTNPLEGTALGMSLLE-AFAESGSLLTIATTHHGELKTLKYSNDFFENACME 597 (844)
Q Consensus 546 sGlDp~~~~al~~~Ile-~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~ 597 (844)
++.|+ +...+....++ .+ ++|| ||.+-|..+-..-+|++..+.+|++.
T Consensus 1304 AsVD~-~TD~lIQ~tIR~~F--~dcT-VltIAHRl~TVmd~DrVlVld~G~v~ 1352 (1381)
T KOG0054|consen 1304 ASVDP-ETDALIQKTIREEF--KDCT-VLTIAHRLNTVMDSDRVLVLDAGRVV 1352 (1381)
T ss_pred ccCCh-HHHHHHHHHHHHHh--cCCe-EEEEeeccchhhhcCeEEEeeCCeEe
Confidence 99999 55555444433 33 3576 99999998888889999999999984
No 432
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.68 E-value=5.1e-08 Score=105.46 Aligned_cols=44 Identities=36% Similarity=0.469 Sum_probs=31.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhh
Q 003142 533 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585 (844)
Q Consensus 533 a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a 585 (844)
+.+|+++|+|||++. .....+++.+. .|.+ +|+|||+..+..++
T Consensus 192 ~~~P~villDE~~~~-------e~~~~l~~~~~-~G~~-vI~ttH~~~~~~~~ 235 (270)
T TIGR02858 192 SMSPDVIVVDEIGRE-------EDVEALLEALH-AGVS-IIATAHGRDVEDLY 235 (270)
T ss_pred hCCCCEEEEeCCCcH-------HHHHHHHHHHh-CCCE-EEEEechhHHHHHH
Confidence 469999999999632 22345555554 6887 99999987775443
No 433
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.58 E-value=3.8e-07 Score=96.51 Aligned_cols=121 Identities=13% Similarity=0.244 Sum_probs=63.6
Q ss_pred cCceEEEEEccCCCCchhh-HhhhhhHHHhhccccccccccccccchhHHHhhhCCc--hhhHhhh----h---hhhhHH
Q 003142 453 RKTRVLVITGPNTGGKTIC-LKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGD--EQSLSQS----L---STFSGH 522 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTL-LK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~--~q~i~~~----l---stfS~~ 522 (844)
+.|++++|+||||+||||| ++.+.........+.++.. +...-.+..+. ..+|. .+....+ + ..+++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~-e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST-QLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC-CCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccCh
Confidence 4578999999999999999 5666543322223344443 22111112111 22222 1111100 0 001111
Q ss_pred ---hhHHHHHHHh--CCCCcEEEEecCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEEcc
Q 003142 523 ---LKQIGNIISQ--STSQSLVLLDEIGAGT----NPLEGTALGMSLLEAFAESGSLLTIATTH 577 (844)
Q Consensus 523 ---~~rl~~il~~--a~~p~LLLLDEP~sGl----Dp~~~~al~~~Ile~L~~~g~t~vIitTH 577 (844)
...+..++.. ..+|+++++|||++++ |+.....+ ..++..+.+.|.+ +++|+|
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l-~~~l~~l~~~g~t-vi~t~~ 161 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL-MAFFKRISSLNKV-IILTAN 161 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH-HHHHHHHHhCCCE-EEEEec
Confidence 1122222222 2579999999999999 76555555 3566667777775 555544
No 434
>PRK13695 putative NTPase; Provisional
Probab=98.57 E-value=1.3e-07 Score=95.40 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=42.7
Q ss_pred HhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEE
Q 003142 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM 596 (844)
Q Consensus 531 ~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v 596 (844)
..+.+|+++|||||+. ++..+ ..+...+ ..+.+.+.+ +|+|+|+.....+++++.....+.+
T Consensus 92 ~~l~~~~~lllDE~~~-~e~~~-~~~~~~l-~~~~~~~~~-~i~v~h~~~~~~~~~~i~~~~~~~i 153 (174)
T PRK13695 92 RALEEADVIIIDEIGK-MELKS-PKFVKAV-EEVLDSEKP-VIATLHRRSVHPFVQEIKSRPGGRV 153 (174)
T ss_pred hccCCCCEEEEECCCc-chhhh-HHHHHHH-HHHHhCCCe-EEEEECchhhHHHHHHHhccCCcEE
Confidence 4467999999999642 34323 2233333 344467887 9999999777778888887777766
No 435
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.57 E-value=9.7e-08 Score=97.90 Aligned_cols=61 Identities=25% Similarity=0.255 Sum_probs=40.3
Q ss_pred hHHhhHHHHHHH-h--CCCC-cEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003142 520 SGHLKQIGNIIS-Q--STSQ-SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582 (844)
Q Consensus 520 S~~~~rl~~il~-~--a~~p-~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~ 582 (844)
|.|.+++..++. + .... .++|+|||-++|.|.....++ .++..+...+.- +|+|||.+.+.
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~~~~Q-viitTHSp~il 302 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSKKNIQ-VIITTHSPFIL 302 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGGGSSE-EEEEES-GGG-
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCccCCE-EEEeCccchhc
Confidence 667777643332 2 3333 999999999999997777666 344444444665 99999998764
No 436
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.55 E-value=2.5e-07 Score=102.93 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=91.9
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhcccccc--------cc-----ccccccc--------------hhHHHhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHI--------LS-----SEYAKVP--------------WFDSVFAD 505 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~v--------pa-----~~~~~i~--------------~~~~i~~~ 505 (844)
.+.++++.+|.||-|||||++++++..-.. .|.-+ |. .+.+.-. +..++..-
T Consensus 365 sdSeiivmlgEngtgkTTfi~mlag~~~pd-~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkp 443 (592)
T KOG0063|consen 365 SDSEIIVMLGENGTGKTTFIRMLAGRLKPD-EGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKP 443 (592)
T ss_pred CCceeEEEEccCCcchhHHHHHHhcCCCCC-ccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhh
Confidence 456889999999999999999997622111 11111 11 0111000 11122333
Q ss_pred CCchhhHhhhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhh
Q 003142 506 IGDEQSLSQSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584 (844)
Q Consensus 506 ig~~q~i~~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~ 584 (844)
+..++.+++.+.++|| |+++.+.++.+-.++++.|+|||.+-+|...+...+..+.+.+...+.| -.++.||.-+..|
T Consensus 444 L~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakkt-afvVEhdfImaTY 522 (592)
T KOG0063|consen 444 LQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKT-AFVVEHDFIMATY 522 (592)
T ss_pred hhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccch-hhhhhhHHHHHHh
Confidence 4556777778888886 6788888888888899999999999999977777666666777777776 7999999888854
Q ss_pred -hccc
Q 003142 585 -KYSN 588 (844)
Q Consensus 585 -a~~~ 588 (844)
|+++
T Consensus 523 ladrv 527 (592)
T KOG0063|consen 523 LADRV 527 (592)
T ss_pred hccee
Confidence 4444
No 437
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.52 E-value=1.7e-07 Score=116.17 Aligned_cols=95 Identities=21% Similarity=0.174 Sum_probs=73.6
Q ss_pred hhhCCchhh-HhhhhhhhhHHhhH-HHHHHHhCCCC--cEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003142 503 FADIGDEQS-LSQSLSTFSGHLKQ-IGNIISQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578 (844)
Q Consensus 503 ~~~ig~~q~-i~~~lstfS~~~~r-l~~il~~a~~p--~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd 578 (844)
+..+|+... +.+...++|+++++ +..+.+++.+| .|+||||||+||||.+...+. .++..|.+.|.| ||++||+
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~-~~L~~L~~~G~T-VIvVeHd 548 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLI-NTLKRLRDLGNT-VIVVEHD 548 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHH-HHHHHHHhCCCE-EEEEECC
Confidence 344555432 56677889986655 45555555554 899999999999998888876 566778888987 9999999
Q ss_pred hhHHhhhccccce------eeeEEEEe
Q 003142 579 GELKTLKYSNDFF------ENACMEFD 599 (844)
Q Consensus 579 ~el~~~a~~~~~v------~ng~v~fd 599 (844)
.++..+|+++..+ .+|.+.+.
T Consensus 549 ~~~i~~aD~vi~LgpgaG~~~G~Iv~~ 575 (924)
T TIGR00630 549 EETIRAADYVIDIGPGAGIHGGEVVAS 575 (924)
T ss_pred HHHHhhCCEEEEecccccCCCCEEeec
Confidence 9888899999988 78888764
No 438
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.48 E-value=2.5e-07 Score=114.81 Aligned_cols=95 Identities=20% Similarity=0.149 Sum_probs=74.1
Q ss_pred hhhCCchhh-HhhhhhhhhHHhhHH-HHHHHhCCCC--cEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003142 503 FADIGDEQS-LSQSLSTFSGHLKQI-GNIISQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578 (844)
Q Consensus 503 ~~~ig~~q~-i~~~lstfS~~~~rl-~~il~~a~~p--~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd 578 (844)
+..+|+... +.....++|+++++. ..+.+++.+| .|+||||||+||||.+...+. .++..|++.|.| ||++||+
T Consensus 473 L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~~G~T-VIvVeH~ 550 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRDLGNT-LIVVEHD 550 (943)
T ss_pred hhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHH-HHHHHHHhCCCE-EEEEeCC
Confidence 455566533 567778889876554 4444555665 899999999999998888876 566778888997 9999999
Q ss_pred hhHHhhhccccce------eeeEEEEe
Q 003142 579 GELKTLKYSNDFF------ENACMEFD 599 (844)
Q Consensus 579 ~el~~~a~~~~~v------~ng~v~fd 599 (844)
.+....|+++..+ .+|.+.++
T Consensus 551 ~~~i~~aD~vi~LgpgaG~~~G~iv~~ 577 (943)
T PRK00349 551 EDTIRAADYIVDIGPGAGVHGGEVVAS 577 (943)
T ss_pred HHHHHhCCEEEEeccccCCCCCEEeec
Confidence 9888889999988 88888764
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.40 E-value=6.2e-07 Score=90.56 Aligned_cols=120 Identities=16% Similarity=0.093 Sum_probs=65.6
Q ss_pred EEEEccCCCCchhhHhhhhhHHH-hhccccccccccccccchhHHHhhhCCchh----------hHhhhhhhhhHHhhH-
Q 003142 458 LVITGPNTGGKTICLKTVGLAVM-MAKSGLHILSSEYAKVPWFDSVFADIGDEQ----------SLSQSLSTFSGHLKQ- 525 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~l~~-~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q----------~i~~~lstfS~~~~r- 525 (844)
++|.||.|+|||||.-.++.-.. .....+++.. +.. ...+...+..+|..- ........++++..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~-e~~-~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL-EES-PEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCC-HHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 68999999999998776643222 1122233332 111 111111222223221 111111223343322
Q ss_pred ----HHHHH--HhCCCCcEEEEecCCCCCC---HHHHHHHHHHHHHHHHhcCCeEEEEEccchhH
Q 003142 526 ----IGNII--SQSTSQSLVLLDEIGAGTN---PLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581 (844)
Q Consensus 526 ----l~~il--~~a~~p~LLLLDEP~sGlD---p~~~~al~~~Ile~L~~~g~t~vIitTHd~el 581 (844)
+..+. ....+|+++++|||++.+| +..... ...++..+++.|++ +|+++|+...
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~-i~~l~~~l~~~g~t-vi~v~~~~~~ 142 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLE-IRRLLFALKRFGVT-TLLTSEQSGL 142 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHH-HHHHHHHHHHCCCE-EEEEeccccC
Confidence 11121 1246899999999999998 544443 34567778888887 8999998654
No 440
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.33 E-value=2.1e-06 Score=83.50 Aligned_cols=122 Identities=18% Similarity=0.149 Sum_probs=63.3
Q ss_pred EEEEEccCCCCchhhHhhhhhHHHhh-ccccccccccccccchhHHH--hhhCCchhhHhh--hhhhh--hHHhhHHHHH
Q 003142 457 VLVITGPNTGGKTICLKTVGLAVMMA-KSGLHILSSEYAKVPWFDSV--FADIGDEQSLSQ--SLSTF--SGHLKQIGNI 529 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~l~~~~-q~G~~vpa~~~~~i~~~~~i--~~~ig~~q~i~~--~lstf--S~~~~rl~~i 529 (844)
+++|+||||+||||+++.++...... ....++.. +.......... +...+..+.... ..... .....++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI-EEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC-CcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 36899999999999999986543221 11122222 11111111110 111111111000 00000 1122234444
Q ss_pred HHhCCCCcEEEEecCCCCCCHH---------HHHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003142 530 ISQSTSQSLVLLDEIGAGTNPL---------EGTALGMSLLEAFAESGSLLTIATTHHGE 580 (844)
Q Consensus 530 l~~a~~p~LLLLDEP~sGlDp~---------~~~al~~~Ile~L~~~g~t~vIitTHd~e 580 (844)
.....++.++++|||++-+++. ........+...+.+.+++ +|+|+|...
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-vv~~~~~~~ 138 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVT-VIFTLQVPS 138 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCce-EEEEEecCC
Confidence 5557899999999999543332 2234445677777667887 999999764
No 441
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.29 E-value=4.2e-06 Score=88.36 Aligned_cols=143 Identities=10% Similarity=0.099 Sum_probs=72.9
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHH-hhccccccccccccccchhHHHhhhCCc--hhhHhhh-----------hhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVM-MAKSGLHILSSEYAKVPWFDSVFADIGD--EQSLSQS-----------LST 518 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~-~~q~G~~vpa~~~~~i~~~~~i~~~ig~--~q~i~~~-----------lst 518 (844)
+.|.++.|+||+|+|||||...++.-.+ ....+.|+.. +...-.+..+ +..+|. .+.+..+ ...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~-e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT-ENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc-CCCHHHHHHH-HHHCCCChhHHHhCCCceEEecccccccc
Confidence 4678999999999999999998743221 1223344443 2221111111 122221 1111110 011
Q ss_pred hhHHhhHH-HHHHHhC--CCCcEEEEecCCCCCC---HHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccce
Q 003142 519 FSGHLKQI-GNIISQS--TSQSLVLLDEIGAGTN---PLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFF 591 (844)
Q Consensus 519 fS~~~~rl-~~il~~a--~~p~LLLLDEP~sGlD---p~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v 591 (844)
.+..+.++ ..+...+ .+|+++++|||++.+| +.....+.. .+..+.+.|++ +++++|...+. ..+.....+
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~~g~t-vllt~~~~~~~~~~~~~~~~l 178 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVDLGKT-ILITLHPYAFSEELLSRIRSI 178 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHhCCCE-EEEEecCCcCCHHHHHHHHhh
Confidence 11222222 2222232 4899999999996544 433333322 23445667887 89999975542 233334455
Q ss_pred eeeEEEEe
Q 003142 592 ENACMEFD 599 (844)
Q Consensus 592 ~ng~v~fd 599 (844)
.+|.+.++
T Consensus 179 ~DgvI~L~ 186 (234)
T PRK06067 179 CDVYLKLR 186 (234)
T ss_pred eEEEEEEE
Confidence 55555544
No 442
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.27 E-value=3e-06 Score=97.50 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=86.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccc-cccccccchhHHHh-hhCCchhhHhhhh--
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL-SSEYAKVPWFDSVF-ADIGDEQSLSQSL-- 516 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vp-a~~~~~i~~~~~i~-~~ig~~q~i~~~l-- 516 (844)
+..+.+++ +. ..|+.++|+||||+|||||+++|++..-. ..|.+.- ......+. .++ ..++.. .+....
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg~ev~---e~~~~~l~~~-~l~r~v~v 218 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERGREVR---EFIERDLGPE-GLKRSIVV 218 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCCccHH---HHHHhhcChh-hhcCeEEE
Confidence 44567777 77 77888999999999999999998653221 1221111 10111111 111 111110 010000
Q ss_pred ---hhhhHHhhH--------HHHHHHhCCCCcEEEEe-----------------cC--CCCCCHHHHHHHHHHHHHHHHh
Q 003142 517 ---STFSGHLKQ--------IGNIISQSTSQSLVLLD-----------------EI--GAGTNPLEGTALGMSLLEAFAE 566 (844)
Q Consensus 517 ---stfS~~~~r--------l~~il~~a~~p~LLLLD-----------------EP--~sGlDp~~~~al~~~Ile~L~~ 566 (844)
+.-+..++. ++.-++-....=||++| || ++|+||.....+ ..+++.+..
T Consensus 219 v~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l-~~ller~~~ 297 (438)
T PRK07721 219 VATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAIL-PKLLERTGT 297 (438)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHH-HHHHHHhcC
Confidence 000111111 11112223455677777 75 689999555555 467777763
Q ss_pred --cCC-----eEEEEEccchhHHhhhccccceeeeEEEEecc
Q 003142 567 --SGS-----LLTIATTHHGELKTLKYSNDFFENACMEFDEV 601 (844)
Q Consensus 567 --~g~-----t~vIitTHd~el~~~a~~~~~v~ng~v~fd~~ 601 (844)
.|. | |++.+||++. .+|+++..+.+|++.++..
T Consensus 298 ~~~GsIT~~~T-Vlv~~hdm~e-~i~d~v~~i~dG~Ivls~~ 337 (438)
T PRK07721 298 NASGSITAFYT-VLVDGDDMNE-PIADTVRGILDGHFVLDRQ 337 (438)
T ss_pred CCCCCeeeEEE-EEEECCCCCc-hhhhhEEEecCEEEEEecc
Confidence 464 5 8999999874 7899999999999998764
No 443
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.16 E-value=1.2e-05 Score=74.89 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+..++|+||+|+||||+++.++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR 24 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh
Confidence 45689999999999999999854
No 444
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.14 E-value=4.6e-06 Score=93.09 Aligned_cols=72 Identities=10% Similarity=0.150 Sum_probs=55.7
Q ss_pred hhhhhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003142 514 QSLSTFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587 (844)
Q Consensus 514 ~~lstfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~ 587 (844)
......|+ +.++.+.++..+...++.++|||.+-||...+...+. .++.|..-... ||++.||+.+..|-..
T Consensus 209 re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~-~IRsl~~p~~Y-iIVVEHDLsVLDylSD 281 (592)
T KOG0063|consen 209 REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAI-TIRSLINPDRY-IIVVEHDLSVLDYLSD 281 (592)
T ss_pred hhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHH-HHHHhhCCCCe-EEEEEeechHHHhhhc
Confidence 33344554 6777788888889999999999999999988887764 55666666776 9999999988765443
No 445
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.10 E-value=1.4e-05 Score=95.19 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=78.9
Q ss_pred hhhHHh-hHHHHHHHhCC----CCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccccee
Q 003142 518 TFSGHL-KQIGNIISQST----SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 592 (844)
Q Consensus 518 tfS~~~-~rl~~il~~a~----~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ 592 (844)
.+|+++ +++..+++++. +|+++|||||++|+|+.....+.. ++..+.. +.+ ||++||++.+..+|+++..+.
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~-~l~~l~~-~~~-vi~iTH~~~~~~~ad~~~~l~ 516 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAK-KLAQLSE-RHQ-VLCVTHLPQVAAHADAHFKVE 516 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCE-EEEEEChHHHHHhcCeEEEEE
Confidence 466655 55555555544 469999999999999988777764 5556654 776 999999999998999888877
Q ss_pred eeEEEEecccceeeEEeecCCCCCchHHHHHHHcC---CCHHHHHHHHHHH
Q 003142 593 NACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG---LPGIVVQNARQLY 640 (844)
Q Consensus 593 ng~v~fd~~~l~p~y~l~~G~~g~S~a~~iA~~~g---l~~~ii~~A~~~l 640 (844)
++.. +..+ +.-.....+.---.+||+++| ..+..+..|+.++
T Consensus 517 k~~~--~~~t----~s~i~~L~~~~r~~EiArml~G~~~t~~~~~~A~~ll 561 (563)
T TIGR00634 517 KEGL--DGRT----ATRVRPLSGEERVAELARMLAGLEKSDLTLAHAQELL 561 (563)
T ss_pred EccC--CCcE----EEEEEECCccHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 6542 2222 222222355556788999994 2455677777765
No 446
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.02 E-value=1.2e-05 Score=83.25 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=31.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003142 533 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588 (844)
Q Consensus 533 a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~ 588 (844)
..+|+++++||| .|+.. +..+++ ....|.. ++.|+|........++.
T Consensus 72 r~~pd~ii~gEi---rd~e~----~~~~l~-~a~~G~~-v~~t~Ha~~~~~~~~Rl 118 (198)
T cd01131 72 RQDPDVILVGEM---RDLET----IRLALT-AAETGHL-VMSTLHTNSAAKTIDRI 118 (198)
T ss_pred cCCcCEEEEcCC---CCHHH----HHHHHH-HHHcCCE-EEEEecCCcHHHHHhHH
Confidence 458999999999 57632 233344 3457886 99999987655444444
No 447
>PRK10869 recombination and repair protein; Provisional
Probab=98.02 E-value=2.5e-05 Score=92.85 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=78.9
Q ss_pred hhhHH-hhHHHHHHHhCC----CCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccccee
Q 003142 518 TFSGH-LKQIGNIISQST----SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 592 (844)
Q Consensus 518 tfS~~-~~rl~~il~~a~----~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ 592 (844)
.+|++ ++++..++.++. +|+++|||||++|+|+.....+.. ++..+.. +.+ ||++||++.+..+|+++..|.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~-~l~~l~~-~~q-vi~iTH~~~~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGK-LLRQLGE-STQ-VMCVTHLPQVAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc-CCE-EEEEecCHHHHHhCCEEEEEe
Confidence 35554 556666665553 689999999999999977777764 5556654 566 999999999999999888776
Q ss_pred eeEEEEecccceeeEEeecCCCCCchHHHHHHHcC---CCHHHHHHHHHHH
Q 003142 593 NACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG---LPGIVVQNARQLY 640 (844)
Q Consensus 593 ng~v~fd~~~l~p~y~l~~G~~g~S~a~~iA~~~g---l~~~ii~~A~~~l 640 (844)
.+.. +. -||.-..-..+..--.+||+++| ..+..+..|+.++
T Consensus 507 k~~~--~~----~t~s~i~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl 551 (553)
T PRK10869 507 KETD--GG----MTETHMQPLDKKARLQELARLLGGSEVTRNTLANAKELL 551 (553)
T ss_pred cccc--CC----eeeEEEEECChhHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 5431 11 12222222345556788999994 2566677887765
No 448
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.98 E-value=1.1e-05 Score=100.69 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=97.3
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH-----------H----------------hhccccccccc---
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-----------M----------------MAKSGLHILSS--- 491 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~-----------~----------------~~q~G~~vpa~--- 491 (844)
..+.++++.- ++|+++.+.||.|||||||||.+++.. + .+|...++|--
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 3577888877 889999999999999999999996431 1 01111111100
Q ss_pred -----------cccccc----------hhHHHhhhCCchhhHh-----hhhhhhhHHh-hHHHHHHHhCCCCcEEEEecC
Q 003142 492 -----------EYAKVP----------WFDSVFADIGDEQSLS-----QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEI 544 (844)
Q Consensus 492 -----------~~~~i~----------~~~~i~~~ig~~q~i~-----~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP 544 (844)
...++. ..+.++..+|+....+ ...+..||+. +|+...-.++.+++++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 000000 1112223333322111 1122344544 444444456789999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccch--hHHhhhccccceeeeEEEEec
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG--ELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~--el~~~a~~~~~v~ng~v~fd~ 600 (844)
++|||......++..+...-...+.| ++++-|.. +...+-|++..+.+|.+.|.+
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t-~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~G 344 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGAT-ALVSILQPSPEIYDLFDDVILLSEGYQIYQG 344 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcce-EEEEeccCChHHHHhhhheeeeeccceEEec
Confidence 99999988888876665544445665 77777774 555788999999999998854
No 449
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.97 E-value=6.8e-06 Score=90.75 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=37.3
Q ss_pred hCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEE
Q 003142 532 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM 596 (844)
Q Consensus 532 ~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v 596 (844)
+..+|+++++|||.+ . .. ..+++.+. .|...++.|+|........++...+..+.+
T Consensus 215 Lr~~pd~ii~gE~r~---~----e~-~~~l~a~~-~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~ 270 (308)
T TIGR02788 215 LRMRPDRIILGELRG---D----EA-FDFIRAVN-TGHPGSITTLHAGSPEEAFEQLALMVKSSQ 270 (308)
T ss_pred hcCCCCeEEEeccCC---H----HH-HHHHHHHh-cCCCeEEEEEeCCCHHHHHHHHHHHhhccc
Confidence 357999999999964 2 22 24556655 454326899999887766776666655444
No 450
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.86 E-value=5.1e-05 Score=86.64 Aligned_cols=166 Identities=11% Similarity=0.106 Sum_probs=108.2
Q ss_pred CCCchhhhhhccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc---------------------cc-
Q 003142 429 LSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------SG- 485 (844)
Q Consensus 429 ~~~~~~~~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q---------------------~G- 485 (844)
+++.+.+++.-.+ -....+++|+ ..|+|++|.|-.|-|-+.|+..|+++..... .|
T Consensus 258 L~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~ 336 (501)
T COG3845 258 LEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGL 336 (501)
T ss_pred EEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCC
Confidence 3444445554322 3567789999 8999999999999999999999976642111 01
Q ss_pred cccccccc-----cccchhHHH----------------------------hhhCCch-hhHhhhhhhhhH-HhhHHHHHH
Q 003142 486 LHILSSEY-----AKVPWFDSV----------------------------FADIGDE-QSLSQSLSTFSG-HLKQIGNII 530 (844)
Q Consensus 486 ~~vpa~~~-----~~i~~~~~i----------------------------~~~ig~~-q~i~~~lstfS~-~~~rl~~il 530 (844)
.|+|.+.. ..++..+++ ...+++. .+......++|| .+|++....
T Consensus 337 ~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaR 416 (501)
T COG3845 337 AYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILAR 416 (501)
T ss_pred ccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhh
Confidence 13342110 011111111 1111111 111222345666 456677777
Q ss_pred HhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccch-hHHhhhccccceeeeEEE
Q 003142 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG-ELKTLKYSNDFFENACME 597 (844)
Q Consensus 531 ~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~-el~~~a~~~~~v~ng~v~ 597 (844)
.+..+|+||+...||.|+|......+...|+ ..++.|+. |+++|-+. ++..+||++..+.+|.+.
T Consensus 417 El~~~p~lLI~~qPTrGLDvgA~~~I~~~l~-e~r~~G~A-VLLiS~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 417 ELARRPDLLIAAQPTRGLDVGAIEFIHERLL-ELRDAGKA-VLLISEDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred hhccCCCEEEEcCCCccccHHHHHHHHHHHH-HHHhcCCE-EEEEehhHHHHHHhhheeeeeeCCcee
Confidence 7889999999999999999976666655555 46888987 88888875 556899999999999885
No 451
>PRK03918 chromosome segregation protein; Provisional
Probab=97.83 E-value=3.5e-05 Score=96.47 Aligned_cols=77 Identities=18% Similarity=0.107 Sum_probs=57.2
Q ss_pred hhhhhhhHHhhHHHHH-------HHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhc
Q 003142 514 QSLSTFSGHLKQIGNI-------ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586 (844)
Q Consensus 514 ~~lstfS~~~~rl~~i-------l~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~ 586 (844)
....++|+++++...+ ..++.+|+++||||||+|+|+.....+...+ ..+...+.+ ||++||+.++..+|+
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l-~~~~~~~~~-iiiith~~~~~~~~d 861 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIM-ERYLRKIPQ-VIIVSHDEELKDAAD 861 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHH-HHHHhcCCE-EEEEECCHHHHHhCC
Confidence 3456788887663222 2346889999999999999997777776544 445555676 999999999888888
Q ss_pred ccccee
Q 003142 587 SNDFFE 592 (844)
Q Consensus 587 ~~~~v~ 592 (844)
++..|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 776664
No 452
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.81 E-value=2.7e-05 Score=99.27 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=55.4
Q ss_pred hhhhhhhHHhhHH-HHHHHhCC----------CCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003142 514 QSLSTFSGHLKQI-GNIISQST----------SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582 (844)
Q Consensus 514 ~~lstfS~~~~rl-~~il~~a~----------~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~ 582 (844)
..+.++||+++.+ ..+++++. +|++|||||||+|+|+.....+. .++..+...|.+ |++|||+.+++
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~-~~l~~l~~~g~~-i~iisH~~~~~ 1023 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAI-GILDAIREGSKM-IGIISHVPEFR 1023 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHH-HHHHHHHhCCCE-EEEEeCcHHHH
Confidence 3567889988654 33344332 79999999999999996666665 566777777886 99999999988
Q ss_pred h-hhccccce
Q 003142 583 T-LKYSNDFF 591 (844)
Q Consensus 583 ~-~a~~~~~v 591 (844)
. +++++..+
T Consensus 1024 ~~~~~~i~v~ 1033 (1042)
T TIGR00618 1024 ERIPHRILVK 1033 (1042)
T ss_pred HhhCCEEEEE
Confidence 5 55544433
No 453
>PRK01156 chromosome segregation protein; Provisional
Probab=97.79 E-value=4.9e-05 Score=95.50 Aligned_cols=78 Identities=21% Similarity=0.147 Sum_probs=57.5
Q ss_pred hhhhhhHHhhHHHHH-------HHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEccchhHHhhhc
Q 003142 515 SLSTFSGHLKQIGNI-------ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESG-SLLTIATTHHGELKTLKY 586 (844)
Q Consensus 515 ~lstfS~~~~rl~~i-------l~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g-~t~vIitTHd~el~~~a~ 586 (844)
.+..+|+++++...+ ..++.+|++++|||||+|+|+.....+...+...+...+ .+++|++||++++..+|+
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 456788887654432 345689999999999999999777777654433444443 223899999999999998
Q ss_pred ccccee
Q 003142 587 SNDFFE 592 (844)
Q Consensus 587 ~~~~v~ 592 (844)
++..+.
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 887775
No 454
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.77 E-value=2.3e-05 Score=66.07 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=26.6
Q ss_pred eEEEEecCceEEEEEccCCCCchhhHhhhhhH
Q 003142 447 IDIFIARKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 447 ~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..+.|+..|.+++|+||||+||||+|..|..+
T Consensus 15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred eEEeecCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56677766778999999999999999998543
No 455
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.71 E-value=3.1e-05 Score=72.49 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=30.2
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
..+..+++|. .+|++++|+||+|||||||++++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 4578888998 788999999999999999999974
No 456
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.68 E-value=0.00015 Score=68.29 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCCchhhHhhhhhH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.+..+.|+||.|+||||+++.++..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998643
No 457
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.65 E-value=6.5e-05 Score=89.30 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=55.5
Q ss_pred hhhhhhHHhhHHHHHH-HhC----------CCCcEEEEecCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003142 515 SLSTFSGHLKQIGNII-SQS----------TSQSLVLLDEIG-AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582 (844)
Q Consensus 515 ~lstfS~~~~rl~~il-~~a----------~~p~LLLLDEP~-sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~ 582 (844)
....+|+++++...+. +++ .+|+++|||||| +++|+.....+.. ++..+ .|.+ ||++||+.++.
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~-~l~~~--~~~~-iiiish~~~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLS-ILDSL--KDTN-VFVISHKDHDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHH-HHHhC--CCCe-EEEEECchhch
Confidence 4567888776544443 333 589999999998 7899977777754 55555 4676 99999998888
Q ss_pred hhhccccceee
Q 003142 583 TLKYSNDFFEN 593 (844)
Q Consensus 583 ~~a~~~~~v~n 593 (844)
..++++..+.+
T Consensus 541 ~~~d~~~~l~~ 551 (562)
T PHA02562 541 QKFDRHLKMEK 551 (562)
T ss_pred hhhhcEEEEEE
Confidence 88888877765
No 458
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.64 E-value=0.00016 Score=94.30 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=52.6
Q ss_pred hhhhhHHhhH-------HHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH----hcCCeEEEEEccchhHHh-
Q 003142 516 LSTFSGHLKQ-------IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA----ESGSLLTIATTHHGELKT- 583 (844)
Q Consensus 516 lstfS~~~~r-------l~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~----~~g~t~vIitTHd~el~~- 583 (844)
.+.+|+++++ +..+.+++.+|.+|||||||+|+|+.....+...+...+. ..|.+ ||++||+.++..
T Consensus 1197 ~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~-viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1197 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQ-LLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCe-EEEEecCHHHHHH
Confidence 3568888775 5556677899999999999999999888877665555432 23666 999999998874
Q ss_pred hh
Q 003142 584 LK 585 (844)
Q Consensus 584 ~a 585 (844)
+|
T Consensus 1276 ~~ 1277 (1311)
T TIGR00606 1276 LG 1277 (1311)
T ss_pred Hh
Confidence 44
No 459
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.63 E-value=0.0001 Score=82.64 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=55.6
Q ss_pred CceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhC
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQS 533 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a 533 (844)
.+.+++|+||+||||||+|+.+.........+..+.......+.+ ......+... .+.....+|... +.. ++-
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~-~~~~~~i~q~-evg~~~~~~~~~---l~~--~lr 193 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH-RNKRSLINQR-EVGLDTLSFANA---LRA--ALR 193 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc-cCccceEEcc-ccCCCCcCHHHH---HHH--hhc
Confidence 356789999999999999998743221111121111101111100 0000000000 000000112111 122 234
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh
Q 003142 534 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583 (844)
Q Consensus 534 ~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~ 583 (844)
.+|+++++||+ .|+.... ..++ ....|.. ++.|+|-.....
T Consensus 194 ~~pd~i~vgEi---rd~~~~~----~~l~-aa~tGh~-v~~T~Ha~~~~~ 234 (343)
T TIGR01420 194 EDPDVILIGEM---RDLETVE----LALT-AAETGHL-VFGTLHTNSAAQ 234 (343)
T ss_pred cCCCEEEEeCC---CCHHHHH----HHHH-HHHcCCc-EEEEEcCCCHHH
Confidence 69999999999 6874332 2233 3556886 899999755443
No 460
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.61 E-value=0.00028 Score=74.95 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=33.4
Q ss_pred CCCCcEEEEecCCC------CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003142 533 STSQSLVLLDEIGA------GTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580 (844)
Q Consensus 533 a~~p~LLLLDEP~s------GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~e 580 (844)
..+|++|++| |++ ..|+.....+...+.+...+.|++ ||+++|...
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~a-vl~v~H~~K 160 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAA-ILLVHHVRK 160 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCE-EEEEeccCc
Confidence 4789999999 765 468877776665555444456887 999999853
No 461
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.60 E-value=5.5e-05 Score=86.81 Aligned_cols=138 Identities=10% Similarity=0.095 Sum_probs=72.7
Q ss_pred Ee-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccc-cccccccc-hhHHHhhhCCchhh-HhhhhhhhhHHhhHH
Q 003142 451 IA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL-SSEYAKVP-WFDSVFADIGDEQS-LSQSLSTFSGHLKQI 526 (844)
Q Consensus 451 l~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vp-a~~~~~i~-~~~~i~~~ig~~q~-i~~~lstfS~~~~rl 526 (844)
+. ..|+.++|+||||+|||||+++|+..... ..|.+.- ......+. ++...+..-+...+ +....+..+..++..
T Consensus 151 l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 151 LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred ceecCCcEEEEECCCCCChHHHHHHHhccCCC-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 55 56678899999999999999998653321 1121111 10111221 11222222122211 111223334444433
Q ss_pred HHHHHh--------CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEE
Q 003142 527 GNIISQ--------STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM 596 (844)
Q Consensus 527 ~~il~~--------a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v 596 (844)
....+. ...+-||++|+||++.|+. ..+. ..+...-..|-+ ..+.||...+.+-+.. ...|++
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reis-l~~~e~p~~G~~-~~~~s~l~~L~ERag~---~~~GSi 300 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVD-IAVKELPIGGKT-LLMESYMKKLLERSGK---TQKGSI 300 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHH-HHhcCCCCCCee-eeeeccchhHHHHhcc---CCCcce
Confidence 332222 3688999999999999984 3332 233444434665 6777886666544433 345665
No 462
>PRK04296 thymidine kinase; Provisional
Probab=97.58 E-value=0.00042 Score=71.24 Aligned_cols=142 Identities=16% Similarity=0.153 Sum_probs=75.8
Q ss_pred ceEEEEEccCCCCchhhHhhhhhHHHhhcccc---cc-ccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHH
Q 003142 455 TRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---HI-LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 530 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---~v-pa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il 530 (844)
|.+++|+||.|+||||++..+..-. ...|. ++ |. -..... ...+..++|..-.. ............+..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~--~~~g~~v~i~k~~-~d~~~~-~~~i~~~lg~~~~~-~~~~~~~~~~~~~~~-- 74 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY--EERGMKVLVFKPA-IDDRYG-EGKVVSRIGLSREA-IPVSSDTDIFELIEE-- 74 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH--HHcCCeEEEEecc-cccccc-CCcEecCCCCcccc-eEeCChHHHHHHHHh--
Confidence 5789999999999999887653221 11231 11 21 011111 12233444421100 000000111111111
Q ss_pred HhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccc-----------hhHHhhhccccceeeeEEEEe
Q 003142 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH-----------GELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 531 ~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd-----------~el~~~a~~~~~v~ng~v~fd 599 (844)
...+.++|++||.-- ++. ..+ ..+++.+...|.+ ||++.++ ..+..+||.+..+..-++. -
T Consensus 75 -~~~~~dvviIDEaq~-l~~---~~v-~~l~~~l~~~g~~-vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC~~-C 146 (190)
T PRK04296 75 -EGEKIDCVLIDEAQF-LDK---EQV-VQLAEVLDDLGIP-VICYGLDTDFRGEPFEGSPYLLALADKVTELKAICVH-C 146 (190)
T ss_pred -hCCCCCEEEEEcccc-CCH---HHH-HHHHHHHHHcCCe-EEEEecCcccccCcCchHHHHHHhcCeEEEeeEEccc-c
Confidence 235779999999832 443 223 3567777888997 8999998 3555678888777665543 2
Q ss_pred cccceeeEEeec
Q 003142 600 EVKLKPTYKILW 611 (844)
Q Consensus 600 ~~~l~p~y~l~~ 611 (844)
+.....++|+..
T Consensus 147 g~~a~~~~r~~~ 158 (190)
T PRK04296 147 GRKATMNQRLID 158 (190)
T ss_pred CCccceEEEEeC
Confidence 333455677664
No 463
>PRK09183 transposase/IS protein; Provisional
Probab=97.54 E-value=0.00035 Score=75.44 Aligned_cols=107 Identities=20% Similarity=0.283 Sum_probs=57.4
Q ss_pred EEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHH
Q 003142 450 FIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNI 529 (844)
Q Consensus 450 sl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~i 529 (844)
++-..++.++|+||+|+|||+|..+||..... .|..+- .+. ...++..+.... ..+ .+..+
T Consensus 97 ~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~-----~~~-~~~l~~~l~~a~--------~~~---~~~~~ 157 (259)
T PRK09183 97 SFIERNENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVR-----FTT-AADLLLQLSTAQ--------RQG---RYKTT 157 (259)
T ss_pred CchhcCCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEE-----EEe-HHHHHHHHHHHH--------HCC---cHHHH
Confidence 33445677899999999999999999654332 232111 001 011111110000 000 11122
Q ss_pred H-HhCCCCcEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003142 530 I-SQSTSQSLVLLDEIGAG-TNPLEGTALGMSLLEAFAESGSLLTIATTHH 578 (844)
Q Consensus 530 l-~~a~~p~LLLLDEP~sG-lDp~~~~al~~~Ile~L~~~g~t~vIitTHd 578 (844)
+ .....++++++||.+.. .+. +...+...++....+.+ + +|+||+.
T Consensus 158 ~~~~~~~~dlLiiDdlg~~~~~~-~~~~~lf~li~~r~~~~-s-~iiTsn~ 205 (259)
T PRK09183 158 LQRGVMAPRLLIIDEIGYLPFSQ-EEANLFFQVIAKRYEKG-S-MILTSNL 205 (259)
T ss_pred HHHHhcCCCEEEEcccccCCCCh-HHHHHHHHHHHHHHhcC-c-EEEecCC
Confidence 2 22467899999999753 555 33334445666555554 4 6788876
No 464
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.51 E-value=0.00013 Score=93.59 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=56.3
Q ss_pred hhhhhhhHHhhHHHHHHH-h----CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003142 514 QSLSTFSGHLKQIGNIIS-Q----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588 (844)
Q Consensus 514 ~~lstfS~~~~rl~~il~-~----a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~ 588 (844)
..+..+|++++++..+.. + +.+|+++|||||++|+|+.....+.. ++..+.. +.+ +|+|||++.+..+|+++
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~~~~~~~-~~~-~i~~sh~~~~~~~~d~~ 1161 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFAN-LLKEFSK-NTQ-FIVITHNKGTMEVADQL 1161 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHH-HHHHhcc-CCE-EEEEEcChhHHHHhhhH
Confidence 345567887766544433 2 47889999999999999977777754 5555544 465 89999999998888888
Q ss_pred ccee
Q 003142 589 DFFE 592 (844)
Q Consensus 589 ~~v~ 592 (844)
.+|.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 7663
No 465
>PRK06893 DNA replication initiation factor; Validated
Probab=97.50 E-value=0.0012 Score=69.95 Aligned_cols=94 Identities=22% Similarity=0.267 Sum_probs=53.9
Q ss_pred eEEEEEccCCCCchhhHhhhhhHHHhhc-cccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCC
Q 003142 456 RVLVITGPNTGGKTICLKTVGLAVMMAK-SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQST 534 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~ 534 (844)
..+.|.||.|+|||+|+..++.-..... ...|++. .. ...+.. .++....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~--------~~---------------~~~~~~------~~~~~~~ 90 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL--------SK---------------SQYFSP------AVLENLE 90 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH--------HH---------------hhhhhH------HHHhhcc
Confidence 4578999999999999999975432211 0111111 00 000000 1222345
Q ss_pred CCcEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003142 535 SQSLVLLDEIGAGT-NPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580 (844)
Q Consensus 535 ~p~LLLLDEP~sGl-Dp~~~~al~~~Ile~L~~~g~t~vIitTHd~e 580 (844)
+.++|+|||+.... |+.....+ ..++..+.+.|.+ +|++|++..
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l-~~l~n~~~~~~~~-illits~~~ 135 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAI-FDLFNRIKEQGKT-LLLISADCS 135 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHH-HHHHHHHHHcCCc-EEEEeCCCC
Confidence 77999999998754 33233344 4566677777775 666666543
No 466
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.48 E-value=0.00056 Score=85.08 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=38.5
Q ss_pred CCCCcEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003142 533 STSQSLVLLDEIGAGT-NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582 (844)
Q Consensus 533 a~~p~LLLLDEP~sGl-Dp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~ 582 (844)
..+|.++++|||..++ ||..... +..++..+++.|++ ++++||+.+..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~-i~~~lk~~RK~~~~-vil~Tq~~~d~ 698 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDK-IREWLKVLRKANCA-VVLATQSISDA 698 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHH-HHHHHHHHHHcCCE-EEEEeCCHHHH
Confidence 5789999999999999 6754444 45677777888887 99999997655
No 467
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.48 E-value=0.00019 Score=91.58 Aligned_cols=68 Identities=19% Similarity=0.149 Sum_probs=52.4
Q ss_pred hhhhhhhHHhhHHHHH-HHhC--------CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh
Q 003142 514 QSLSTFSGHLKQIGNI-ISQS--------TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583 (844)
Q Consensus 514 ~~lstfS~~~~rl~~i-l~~a--------~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~ 583 (844)
....++||+++.+..+ ++++ .+|++|||||||+|+|+.....+. .++..+...|.+ |+++||..++..
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~-~~l~~l~~~g~~-v~iisH~~~l~~ 1021 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTAL-DALDALNASGKT-IGVISHVEAMKE 1021 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHH-HHHHHHHHCCCE-EEEEecHHHHHH
Confidence 4567889887665444 3443 279999999999999997766665 577888888887 999999888763
No 468
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.47 E-value=0.001 Score=77.26 Aligned_cols=166 Identities=16% Similarity=0.183 Sum_probs=85.4
Q ss_pred EEEEccCCCCchhhHhhhhhHHHhhccc---cccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCC
Q 003142 458 LVITGPNTGGKTICLKTVGLAVMMAKSG---LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQST 534 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~l~~~~q~G---~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~ 534 (844)
+.|.||.|+|||.|++.|+.-......+ .|+++ . .++..+...+... ....|. . ....
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~-~----~f~~~~~~~~~~~-----~~~~f~-------~--~~~~ 193 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-E----KFLNDLVDSMKEG-----KLNEFR-------E--KYRK 193 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-H----HHHHHHHHHHhcc-----cHHHHH-------H--HHHh
Confidence 7899999999999999997533221111 22222 0 0111121111100 011111 1 1113
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEc-cchhHH-hhhcccc-ceeeeEEEEecccceeeEEeec
Q 003142 535 SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT-HHGELK-TLKYSND-FFENACMEFDEVKLKPTYKILW 611 (844)
Q Consensus 535 ~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitT-Hd~el~-~~a~~~~-~v~ng~v~fd~~~l~p~y~l~~ 611 (844)
++++||||||....+......-...++..+.+.|.. +|++| |++... .+.++.. .+..|-+ ++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~-iIitsd~~p~~l~~l~~rL~SR~~~gl~-v~i----------- 260 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQ-IVICSDREPQKLSEFQDRLVSRFQMGLV-AKL----------- 260 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCe-EEEECCCCHHHHHHHHHHHhhHHhcCce-Eee-----------
Confidence 689999999998877643322233466777777776 66666 665433 3433322 2332311 111
Q ss_pred CCCCCchHHHH----HHH--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003142 612 GVPGRSSAINI----AER--LGLPGIVVQNARQLYGAASAEINEVIIEME 655 (844)
Q Consensus 612 G~~g~S~a~~i----A~~--~gl~~~ii~~A~~~l~~~~~~le~~i~~Le 655 (844)
..|....-..| ++. ..+|+++++.-......+-.+++..+.+|.
T Consensus 261 ~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~ 310 (440)
T PRK14088 261 EPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLL 310 (440)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHH
Confidence 11221111222 222 346788877766666677777777777764
No 469
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.46 E-value=0.00015 Score=74.15 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.2
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..++.++|+||||||||||+++|...
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34678999999999999999998543
No 470
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.44 E-value=0.001 Score=80.83 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=24.6
Q ss_pred EEEEe--cCceEEEEEccCCCCchhhHhhhhhHHH
Q 003142 448 DIFIA--RKTRVLVITGPNTGGKTICLKTVGLAVM 480 (844)
Q Consensus 448 disl~--~~g~iv~ItGPNGsGKTTLLK~Ig~l~~ 480 (844)
.++|. .+..+++|.||||+||||+|++|..+.+
T Consensus 19 ~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~Ly 53 (650)
T TIGR03185 19 TFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLALY 53 (650)
T ss_pred eeeeecCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34444 3345899999999999999999854433
No 471
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.44 E-value=0.00021 Score=74.33 Aligned_cols=38 Identities=16% Similarity=0.027 Sum_probs=28.5
Q ss_pred HHHHHhCCCCcEEEEecCC-----CCCCHHHHHHHHHHHHHHHH
Q 003142 527 GNIISQSTSQSLVLLDEIG-----AGTNPLEGTALGMSLLEAFA 565 (844)
Q Consensus 527 ~~il~~a~~p~LLLLDEP~-----sGlDp~~~~al~~~Ile~L~ 565 (844)
..+..++.+|+++++|||| +|+||.....+. .++..++
T Consensus 162 ~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~-~~~~~~~ 204 (215)
T PTZ00132 162 WLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAE-KELQAAA 204 (215)
T ss_pred HHHHHHhhcccceecCCcccCCCccccCHHHHHHHH-HHHHHHh
Confidence 3444567899999999999 999997777665 4444444
No 472
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.41 E-value=0.002 Score=67.68 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=36.8
Q ss_pred CCcEEEEecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH--hhhccccceeeeEEEEe
Q 003142 535 SQSLVLLDEIGAGT--NPLEGTALGMSLLEAFAESGSLLTIATTHHGELK--TLKYSNDFFENACMEFD 599 (844)
Q Consensus 535 ~p~LLLLDEP~sGl--Dp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~--~~a~~~~~v~ng~v~fd 599 (844)
.++++++|-|+.-+ +|.....+...+...+++.|+| +|+|+|..... .+......+.++.+.+.
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~t-vil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFT-ILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCE-EEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 46677777765432 3333344445666677788997 99999964321 11122344556665543
No 473
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.40 E-value=0.00061 Score=78.75 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCC-------eEEEEEccchhHHhhhccccceeeeEEEEecc
Q 003142 545 GAGTNPLEGTALGMSLLEAFAESGS-------LLTIATTHHGELKTLKYSNDFFENACMEFDEV 601 (844)
Q Consensus 545 ~sGlDp~~~~al~~~Ile~L~~~g~-------t~vIitTHd~el~~~a~~~~~v~ng~v~fd~~ 601 (844)
..|.||.-...+ ..+++.....+. + |++.+||+. -.+++....+.+|++.++..
T Consensus 282 ~~Gypp~~~~~l-~~l~ERag~~~~GSIT~i~t-Vl~~~~d~~-dpi~d~~~~i~dG~ivLsr~ 342 (440)
T TIGR01026 282 TKGYTPSVFSTL-PRLLERAGASGKGSITAFYT-VLVEGDDMN-EPIADSVRGILDGHIVLSRA 342 (440)
T ss_pred ccccChhHHHHH-HHHHHHhccCCCCeeeEEEE-EEccCcCCC-cchhhhhccccceEEEEecc
Confidence 458999555444 567777665555 5 788889863 34788889999999998764
No 474
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0004 Score=79.69 Aligned_cols=91 Identities=12% Similarity=0.223 Sum_probs=52.2
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhc---cccccccccccccchhHHHhh---hCCchhhHhhhhhhhhHHhhHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---SGLHILSSEYAKVPWFDSVFA---DIGDEQSLSQSLSTFSGHLKQI 526 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q---~G~~vpa~~~~~i~~~~~i~~---~ig~~q~i~~~lstfS~~~~rl 526 (844)
..|++++|+||||+||||+++.|+....+.. .+..+.. ...+++.++++.. .+|..-.... ....+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~-d~~rigalEQL~~~a~ilGvp~~~v~-------~~~dl 260 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTT-DSYRIGGHEQLRIYGKLLGVSVRSIK-------DIADL 260 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-CCcchhHHHHHHHHHHHcCCceecCC-------CHHHH
Confidence 4568899999999999999999876433221 2223343 4455666655321 2222111000 01112
Q ss_pred HHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 527 GNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 527 ~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
...+..+.+.+++|+|.+ |..+.+.
T Consensus 261 ~~al~~l~~~d~VLIDTa--Grsqrd~ 285 (420)
T PRK14721 261 QLMLHELRGKHMVLIDTV--GMSQRDQ 285 (420)
T ss_pred HHHHHHhcCCCEEEecCC--CCCcchH
Confidence 333444678899999975 6666443
No 475
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.36 E-value=0.00086 Score=76.77 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.4
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+-+.|.||+|+|||++.|.++.
T Consensus 180 kgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4478999999999999999864
No 476
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.36 E-value=0.0045 Score=77.48 Aligned_cols=116 Identities=21% Similarity=0.266 Sum_probs=54.3
Q ss_pred EEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCC
Q 003142 457 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQ 536 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p 536 (844)
..+|+||.|+||||+.+.++.-... | .+|..- ....+ ++.+++.-..-......|...++.+..-+.....+
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~i~~---~-~vp~~l-~~~~~---~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~ 272 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRIIN---G-EVPEGL-KGRRV---LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGN 272 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhhc---C-CCchhh-CCCEE---EEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCC
Confidence 3689999999999999988643322 2 233210 01111 01111110000111223333344443333334578
Q ss_pred cEEEEecCC----CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003142 537 SLVLLDEIG----AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582 (844)
Q Consensus 537 ~LLLLDEP~----sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~ 582 (844)
.+|++||.= +|-.. .+......+.-.+. .|...+|.+|...+..
T Consensus 273 ~ILfIDEih~l~~~~~~~-~~~d~~~~lkp~l~-~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 273 VILFIDELHTMVGAGKAD-GAMDAGNMLKPALA-RGELHCVGATTLDEYR 320 (857)
T ss_pred eEEEEecHHHhccCCCCc-cchhHHHHhcchhh-cCCCeEEEcCCCHHHH
Confidence 899999963 21111 11122333344444 4543477777665553
No 477
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.31 E-value=0.00027 Score=75.86 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=47.0
Q ss_pred hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHH-HHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEE
Q 003142 524 KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTA-LGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACM 596 (844)
Q Consensus 524 ~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~a-l~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v 596 (844)
+++..+.....++++++| ||+.+|+.+-.. + +++.+...+.+ .|+.||........+.+..+..|+.
T Consensus 144 q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~---i~~~~~~~~~~-~ivls~~la~~~~~paI~vl~s~sr 211 (249)
T cd01128 144 RFFGAARNIEEGGSLTII--ATALVDTGSRMDDV---IFEEFKGTGNM-ELVLDRRLAERRIFPAIDILKSGTR 211 (249)
T ss_pred HHHHHhcCCCCCCceEEe--eeheecCCCcccch---HHHHHhcCCCc-EEEEchHHhhCCCCCeEEEcCCCCc
Confidence 444433333479999999 999999633332 3 25666656666 8999999887777777777777765
No 478
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.29 E-value=8.9e-05 Score=76.19 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.1
Q ss_pred EEEEEccCCCCchhhHhhhhhHH
Q 003142 457 VLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
+++|+||+|||||||.++|..+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999996543
No 479
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.29 E-value=0.0019 Score=67.95 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.9
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..|+++.|+||+|+|||||+..++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999988644
No 480
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.26 E-value=0.00052 Score=88.59 Aligned_cols=25 Identities=24% Similarity=0.221 Sum_probs=22.3
Q ss_pred cCceEEEEEccCCCCchhhHhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++++++|+||+|.|||||++.+..
T Consensus 205 ~~~~vvgI~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 205 EEVRMVGIWGSSGIGKTTIARALFS 229 (1153)
T ss_pred CceEEEEEEcCCCCchHHHHHHHHH
Confidence 4678999999999999999999953
No 481
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.25 E-value=0.00072 Score=78.83 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=24.3
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMM 481 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~ 481 (844)
..|.+++++||||+||||++..|+.....
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~ 282 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVM 282 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHH
Confidence 35689999999999999999999765443
No 482
>PRK06526 transposase; Provisional
Probab=97.24 E-value=0.0012 Score=71.03 Aligned_cols=105 Identities=20% Similarity=0.258 Sum_probs=56.6
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ 532 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~ 532 (844)
..++-++|+||.|+|||+|...|+.-.. +.|..+- +.-...++..+... ... ..+...+..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~--~~g~~v~------f~t~~~l~~~l~~~---------~~~--~~~~~~l~~ 156 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRAC--QAGHRVL------FATAAQWVARLAAA---------HHA--GRLQAELVK 156 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHH--HCCCchh------hhhHHHHHHHHHHH---------Hhc--CcHHHHHHH
Confidence 3445689999999999999999864322 2232111 11111222222100 000 011222233
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003142 533 STSQSLVLLDEIGAG-TNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 533 a~~p~LLLLDEP~sG-lDp~~~~al~~~Ile~L~~~g~t~vIitTHd~ 579 (844)
+.+++||++||++.- .++ ....+...++....+.+ . +|+||+..
T Consensus 157 l~~~dlLIIDD~g~~~~~~-~~~~~L~~li~~r~~~~-s-~IitSn~~ 201 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEP-EAANLFFQLVSSRYERA-S-LIVTSNKP 201 (254)
T ss_pred hccCCEEEEcccccCCCCH-HHHHHHHHHHHHHHhcC-C-EEEEcCCC
Confidence 467899999999754 455 33344445665544444 4 68888863
No 483
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.21 E-value=0.0015 Score=69.88 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.0
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
+..+++|+||||+||||+++.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 34578999999999999999874
No 484
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.20 E-value=0.0013 Score=61.87 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|.||.|+||||+.+.++.
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 57999999999999999864
No 485
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.00066 Score=85.56 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=58.7
Q ss_pred hhhhhhhhHHhhHHHHHH---Hh----CCC--CcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh
Q 003142 513 SQSLSTFSGHLKQIGNII---SQ----STS--QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583 (844)
Q Consensus 513 ~~~lstfS~~~~rl~~il---~~----a~~--p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~ 583 (844)
....+++|||.+-+..+. ++ ... -++++|||||..||+.....++ .+++.+...+.+ |++|||+.+|+.
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~-~~l~~i~~~~~q-iiIISH~eel~e 887 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLA-EILEELLSDGRQ-IIIISHVEELKE 887 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHH-HHHHHHHhcCCe-EEEEeChHHHHH
Confidence 456678888765433222 21 233 5999999999999996666654 677778877776 999999999999
Q ss_pred hhccccceee
Q 003142 584 LKYSNDFFEN 593 (844)
Q Consensus 584 ~a~~~~~v~n 593 (844)
+++..+.|..
T Consensus 888 ~~~~~i~V~k 897 (908)
T COG0419 888 RADVRIRVKK 897 (908)
T ss_pred hCCeEEEEEe
Confidence 9988877653
No 486
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.17 E-value=0.0028 Score=73.83 Aligned_cols=102 Identities=16% Similarity=0.212 Sum_probs=57.6
Q ss_pred EEEEccCCCCchhhHhhhhhHHHhhcccc---ccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCC
Q 003142 458 LVITGPNTGGKTICLKTVGLAVMMAKSGL---HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQST 534 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~ 534 (844)
+.|.||.|+|||.|+..++.-......+. ++++ ..++..+ ...+......+..+.....
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~---------~~f~~~~---------~~~l~~~~~~~~~~~~~~~ 205 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG---------DEFARKA---------VDILQKTHKEIEQFKNEIC 205 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH---------HHHHHHH---------HHHHHHhhhHHHHHHHHhc
Confidence 78999999999999999864322111111 1221 1111110 1111110012333444456
Q ss_pred CCcEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003142 535 SQSLVLLDEIGAGT-NPLEGTALGMSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 535 ~p~LLLLDEP~sGl-Dp~~~~al~~~Ile~L~~~g~t~vIitTHd~ 579 (844)
.+++|||||+..-- +......+ ..++..+.+.|.. +|+|++..
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~l-f~l~N~~~~~~k~-iIltsd~~ 249 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIF-FTIFNNFIENDKQ-LFFSSDKS 249 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHH-HHHHHHHHHcCCc-EEEECCCC
Confidence 88999999996543 23233344 4677778888876 88888864
No 487
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.15 E-value=0.0036 Score=78.01 Aligned_cols=48 Identities=21% Similarity=0.157 Sum_probs=38.7
Q ss_pred CCCCcEEEEecCCCCCC-HHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003142 533 STSQSLVLLDEIGAGTN-PLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582 (844)
Q Consensus 533 a~~p~LLLLDEP~sGlD-p~~~~al~~~Ile~L~~~g~t~vIitTHd~el~ 582 (844)
...|.++++|||..++| | .....+..+++.+++.|+. ++++||+.+..
T Consensus 640 ~g~p~il~iDE~w~~L~~~-~~~~~i~~~lk~~RK~~~~-~i~~TQ~~~d~ 688 (800)
T PRK13898 640 DGTPSMIVLDEAWALIDNP-VFAPKIKDWLKVLRKLNTF-VIFATQSVEDA 688 (800)
T ss_pred cCCCcEEEEeCChhhCCCH-HHHHHHHHHHHHHHHcCCE-EEEEeCCHHHH
Confidence 46899999999999999 5 4444556777778888886 99999997655
No 488
>PRK02224 chromosome segregation protein; Provisional
Probab=97.13 E-value=0.0007 Score=85.01 Aligned_cols=55 Identities=20% Similarity=0.122 Sum_probs=43.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccccee
Q 003142 537 SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFE 592 (844)
Q Consensus 537 ~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ 592 (844)
+++|||||++|+|+.....+. .++..+...|.+.||++||+.++...|++++.|.
T Consensus 813 ~~~ilDEp~~~lD~~~~~~~~-~~l~~~~~~~~~qviiish~~~~~~~ad~~~~~~ 867 (880)
T PRK02224 813 PPLILDEPTVFLDSGHVSQLV-DLVESMRRLGVEQIVVVSHDDELVGAADDLVRVE 867 (880)
T ss_pred CceEecCCcccCCHHHHHHHH-HHHHHHHhcCCCeEEEEECChHHHHhcCeeEEee
Confidence 679999999999997777776 4666676656423999999999988888777663
No 489
>PRK06921 hypothetical protein; Provisional
Probab=97.13 E-value=0.0026 Score=68.96 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=56.5
Q ss_pred ceEEEEEccCCCCchhhHhhhhhHHHhh--ccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGLAVMMA--KSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQ 532 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~ 532 (844)
+..+.|.||.|.|||.|+.+|+.-..-. ....|++. ..++..+ .. .|. .....+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~---------~~l~~~l------~~---~~~----~~~~~~~~ 174 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF---------VEGFGDL------KD---DFD----LLEAKLNR 174 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH---------HHHHHHH------HH---HHH----HHHHHHHH
Confidence 4568999999999999999996533211 11122221 1122211 00 111 11122334
Q ss_pred CCCCcEEEEecCCC---CC---CHHHHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003142 533 STSQSLVLLDEIGA---GT---NPLEGTALGMSLLEAFAESGSLLTIATTHH 578 (844)
Q Consensus 533 a~~p~LLLLDEP~s---Gl---Dp~~~~al~~~Ile~L~~~g~t~vIitTHd 578 (844)
+.+.+||+||+... |. +......+ ..|+......+.+ +|+||+.
T Consensus 175 ~~~~dlLiIDDl~~~~~g~e~~t~~~~~~l-f~iin~R~~~~k~-tIitsn~ 224 (266)
T PRK06921 175 MKKVEVLFIDDLFKPVNGKPRATEWQIEQM-YSVLNYRYLNHKP-ILISSEL 224 (266)
T ss_pred hcCCCEEEEeccccccCCCccCCHHHHHHH-HHHHHHHHHCCCC-EEEECCC
Confidence 56889999999944 43 22233334 4566666666666 7888886
No 490
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.12 E-value=0.002 Score=73.37 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=75.5
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccch------------------h--HHHhhhCCchhh-
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPW------------------F--DSVFADIGDEQS- 511 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~------------------~--~~i~~~ig~~q~- 511 (844)
+.| +++|+|.|-=||||||+.|-.-.|. ++|+ .+.++-+ . .-++.++....+
T Consensus 243 p~G-vTlIvGGGyHGKSTLL~Ale~GVYn-----HipG-DGRE~VVT~~~avkirAEDGR~V~~vDISpFI~~LP~g~dT 315 (448)
T PF09818_consen 243 PKG-VTLIVGGGYHGKSTLLEALERGVYN-----HIPG-DGREFVVTDPDAVKIRAEDGRSVEGVDISPFINNLPGGKDT 315 (448)
T ss_pred CCc-EEEEECCCCccHHHHHHHHHhcccC-----CCCC-CCceEEEECCCceEEEecCCceEeCccchHHHhhCCCCCCC
Confidence 344 8999999999999999999432221 1232 1111100 0 011122111100
Q ss_pred HhhhhhhhhHHhhHHHHHHH-hCCCCcEEEEecCCCCCCHHHHHHHHHHHH--------------HHH-HhcCCeEEEEE
Q 003142 512 LSQSLSTFSGHLKQIGNIIS-QSTSQSLVLLDEIGAGTNPLEGTALGMSLL--------------EAF-AESGSLLTIAT 575 (844)
Q Consensus 512 i~~~lstfS~~~~rl~~il~-~a~~p~LLLLDEP~sGlDp~~~~al~~~Il--------------e~L-~~~g~t~vIit 575 (844)
-...-..-||-+.+-+.|.. +-...++||+||=|++|+..-+...+..++ ..| .+.|.++||++
T Consensus 316 ~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~ 395 (448)
T PF09818_consen 316 TCFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVV 395 (448)
T ss_pred CcccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEe
Confidence 01111112343433333332 224789999999999999866444444333 333 55688756666
Q ss_pred ccchhHHhhhccccceeeeEE
Q 003142 576 THHGELKTLKYSNDFFENACM 596 (844)
Q Consensus 576 THd~el~~~a~~~~~v~ng~v 596 (844)
.---.+...||+++.+.+...
T Consensus 396 Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 396 GGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred ccchhhHhhCCEEEEecCccc
Confidence 556677788888887765443
No 491
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.00079 Score=82.01 Aligned_cols=90 Identities=14% Similarity=0.216 Sum_probs=50.8
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhcc---ccccccccccccchhHHHh---hhCCchhhHhhhhhhhhHHhhHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS---GLHILSSEYAKVPWFDSVF---ADIGDEQSLSQSLSTFSGHLKQI 526 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~---G~~vpa~~~~~i~~~~~i~---~~ig~~q~i~~~lstfS~~~~rl 526 (844)
..+++++++||||+||||++..|+......+. -..+.. ...+++..+++. ..++..-.... ....+
T Consensus 183 ~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~~~~-------~~~~l 254 (767)
T PRK14723 183 AQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPVHAVK-------DAADL 254 (767)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCccccC-------CHHHH
Confidence 35789999999999999999999765433221 123333 344444444332 22232111111 11223
Q ss_pred HHHHHhCCCCcEEEEecCCCC-CCH
Q 003142 527 GNIISQSTSQSLVLLDEIGAG-TNP 550 (844)
Q Consensus 527 ~~il~~a~~p~LLLLDEP~sG-lDp 550 (844)
...+..+.+.++||+|=|+.. .|.
T Consensus 255 ~~al~~~~~~D~VLIDTAGRs~~d~ 279 (767)
T PRK14723 255 RFALAALGDKHLVLIDTVGMSQRDR 279 (767)
T ss_pred HHHHHHhcCCCEEEEeCCCCCccCH
Confidence 444445567799999988743 454
No 492
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.09 E-value=0.00061 Score=87.52 Aligned_cols=76 Identities=13% Similarity=0.065 Sum_probs=56.4
Q ss_pred hhhhhhhHHhhHHHHHH-Hh----CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003142 514 QSLSTFSGHLKQIGNII-SQ----STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588 (844)
Q Consensus 514 ~~lstfS~~~~rl~~il-~~----a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~ 588 (844)
..+..+||+++.+..++ .+ +.+|+++|||||++|+|+.....+.. ++..+.. ++. +|++||+..+..+|++.
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~-~l~~~~~-~~~-~i~~t~~~~~~~~~d~~ 1146 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAK-LIREKAG-EAQ-FIVVSLRSPMIEYADRA 1146 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHH-HHHHhcC-CCe-EEEEECcHHHHHhccee
Confidence 34567888776654443 22 36889999999999999987777764 5555544 354 89999998888888888
Q ss_pred ccee
Q 003142 589 DFFE 592 (844)
Q Consensus 589 ~~v~ 592 (844)
.+|.
T Consensus 1147 ~~~~ 1150 (1164)
T TIGR02169 1147 IGVT 1150 (1164)
T ss_pred EeEE
Confidence 7774
No 493
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.08 E-value=0.0023 Score=68.63 Aligned_cols=104 Identities=16% Similarity=0.257 Sum_probs=59.4
Q ss_pred EEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCC
Q 003142 457 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQ 536 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p 536 (844)
.++|.||.|+|||+|+..|+.-... .|..+- .+. +..++..+. .+|...-.....++..+...
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~-----~it-~~~l~~~l~---------~~~~~~~~~~~~~l~~l~~~ 163 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLL--RGKSVL-----IIT-VADIMSAMK---------DTFSNSETSEEQLLNDLSNV 163 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh--cCCeEE-----EEE-HHHHHHHHH---------HHHhhccccHHHHHHHhccC
Confidence 5789999999999999998643322 232111 111 112222111 01110000112233345689
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003142 537 SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578 (844)
Q Consensus 537 ~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd 578 (844)
+||+|||++.--+......+...|++.-.....+ +|+||-.
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~-tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRP-TGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCC-EEEeCCC
Confidence 9999999988765545556667777765554566 6888875
No 494
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.08 E-value=0.0038 Score=63.47 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=22.8
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVM 480 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~ 480 (844)
..|.++.|+||.|+||||++-.++.-..
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998864433
No 495
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.08 E-value=0.011 Score=73.96 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.4
Q ss_pred EEEEccCCCCchhhHhhhhhH
Q 003142 458 LVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~l 478 (844)
.+|+||.|+||||+.+.++..
T Consensus 211 ~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred eeEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998643
No 496
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.00074 Score=76.41 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=23.3
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
..|.+++|+||||+||||++..|+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 556889999999999999999987543
No 497
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=97.05 E-value=0.0041 Score=55.68 Aligned_cols=89 Identities=17% Similarity=0.157 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccEEeeCCEEEEEecCCcc-ccccE-EeecccCCeEEEecccc
Q 003142 206 SASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL-SFKGL-LLSSSSGIGSVIEPLSA 283 (844)
Q Consensus 206 ~AS~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~r~gr~vi~v~~~~~-~~~gi-v~~S~sG~t~~iEP~~~ 283 (844)
+.+|+|+.+|+.+..++..+.+.+..+...... ..+..+....-.|+|-|+.... .+|.- ++-|+++.++.+...++
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~-~~lk~~~~~~~gy~i~v~~~~~~~~p~~~~~~~~~k~~~rf~t~~l 79 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRKKLGI-PSLKLVYIPKRGYLIEVPKSDEKKLPKDFIIVSSTKSGVRFTTPEL 79 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--TTBEEEEETTTEEEEEEETCCGGGSTTTEEEEEEESSEEEEECHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcEEEEEcCceEEEEEEEccccccCCCceEEEEEEcCcEEEECHHH
Confidence 468999999999999999999999998776543 2233344555578999999876 55544 44477777766666699
Q ss_pred cccHHHHHHHHH
Q 003142 284 VPLNDELQQARA 295 (844)
Q Consensus 284 v~lnn~l~~~~~ 295 (844)
..||.++.+++.
T Consensus 80 ~~L~~~~~~~~e 91 (92)
T PF05190_consen 80 KELNEELKEAEE 91 (92)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988765
No 498
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.05 E-value=0.0026 Score=72.25 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.5
Q ss_pred CceEEEEEccCCCCchhhHhhhhhH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..++++|+||||+||||++..|+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3467899999999999999999753
No 499
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.03 E-value=0.00054 Score=64.87 Aligned_cols=25 Identities=40% Similarity=0.658 Sum_probs=17.9
Q ss_pred CceEEEEEccCCCCchhhHhhhhhH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
+++++.|+||.|+||||+++.+..-
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH
Confidence 4577899999999999999998543
No 500
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.02 E-value=0.0056 Score=64.22 Aligned_cols=122 Identities=19% Similarity=0.158 Sum_probs=61.3
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHH-hhccccccccccccccchhHHHhhhCCch--hhHhhhh-------hhhh--
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVM-MAKSGLHILSSEYAKVPWFDSVFADIGDE--QSLSQSL-------STFS-- 520 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~-~~q~G~~vpa~~~~~i~~~~~i~~~ig~~--q~i~~~l-------stfS-- 520 (844)
+.|.++.|.|+.|+|||++.-.++.-.+ ....++|+.. +.. ...+-+.+..++.. ..+...+ ..+.
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~-e~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL-EER-EERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC-CCC-HHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 3578899999999999999776632211 1222334433 111 11111112222221 1111100 1111
Q ss_pred -HH-hhHHHHHHHhCCCCcEEEEecCCCCC-----CHHHHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003142 521 -GH-LKQIGNIISQSTSQSLVLLDEIGAGT-----NPLEGTALGMSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 521 -~~-~~rl~~il~~a~~p~LLLLDEP~sGl-----Dp~~~~al~~~Ile~L~~~g~t~vIitTHd~ 579 (844)
.. ...+..++.. .+++++++| +.+.+ |+.........++..+++.++| +++++|..
T Consensus 92 ~~~l~~~~~~~i~~-~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~t-vll~s~~~ 154 (224)
T TIGR03880 92 LNRIKNELPILIKE-LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVT-TILTSEAD 154 (224)
T ss_pred HHHHHHHHHHHHHH-hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCE-EEEEEccc
Confidence 11 1122222222 357899999 44433 3333444445688888888997 89999963
Done!