Query 003142
Match_columns 844
No_of_seqs 558 out of 3023
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 14:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb9_A DNA mismatch repair pro 100.0 5.8E-68 2E-72 641.2 36.6 507 44-642 264-795 (800)
2 1ewq_A DNA mismatch repair pro 100.0 2.9E-61 9.9E-66 579.8 43.1 491 44-642 247-761 (765)
3 3thx_B DNA mismatch repair pro 100.0 5.4E-59 1.8E-63 567.7 48.8 511 46-640 318-874 (918)
4 3thx_A DNA mismatch repair pro 100.0 1.3E-56 4.3E-61 548.3 39.3 517 46-642 299-850 (934)
5 2o8b_B DNA mismatch repair pro 100.0 2.3E-55 7.9E-60 542.9 36.7 518 46-641 394-983 (1022)
6 2pcj_A ABC transporter, lipopr 99.9 6E-22 2E-26 206.1 13.0 158 441-600 15-221 (224)
7 3tif_A Uncharacterized ABC tra 99.9 1.4E-21 4.8E-26 204.8 15.3 155 443-600 18-227 (235)
8 3gfo_A Cobalt import ATP-bindi 99.9 2.4E-21 8E-26 207.8 15.2 157 442-600 20-226 (275)
9 4g1u_C Hemin import ATP-bindin 99.9 1.6E-21 5.3E-26 208.2 13.5 158 441-600 22-230 (266)
10 1vpl_A ABC transporter, ATP-bi 99.9 5.1E-21 1.8E-25 203.1 15.9 157 441-599 26-227 (256)
11 1b0u_A Histidine permease; ABC 99.8 3.5E-21 1.2E-25 205.0 13.5 157 441-599 17-234 (262)
12 3fvq_A Fe(3+) IONS import ATP- 99.8 3.8E-21 1.3E-25 213.0 13.9 158 441-600 15-221 (359)
13 2olj_A Amino acid ABC transpor 99.8 5.3E-21 1.8E-25 203.8 14.2 157 441-599 35-240 (263)
14 3tui_C Methionine import ATP-b 99.8 7.2E-21 2.4E-25 211.0 15.0 155 443-600 41-246 (366)
15 1ji0_A ABC transporter; ATP bi 99.8 4.3E-21 1.5E-25 201.7 12.0 157 441-599 17-220 (240)
16 1g6h_A High-affinity branched- 99.8 4E-21 1.4E-25 203.9 11.8 157 441-599 18-234 (257)
17 2nq2_C Hypothetical ABC transp 99.8 1.2E-20 4.1E-25 199.9 13.8 153 442-598 17-208 (253)
18 3rlf_A Maltose/maltodextrin im 99.8 1.4E-20 4.9E-25 209.8 13.3 157 441-600 14-216 (381)
19 1z47_A CYSA, putative ABC-tran 99.8 2.2E-20 7.6E-25 206.8 14.6 157 441-599 26-227 (355)
20 2yyz_A Sugar ABC transporter, 99.8 2.3E-20 7.8E-25 207.1 14.7 157 441-599 14-215 (359)
21 2onk_A Molybdate/tungstate ABC 99.8 2.5E-20 8.6E-25 196.0 13.7 153 445-600 14-209 (240)
22 2yz2_A Putative ABC transporte 99.8 1.7E-20 5.9E-25 200.1 12.5 156 443-600 20-220 (266)
23 2qi9_C Vitamin B12 import ATP- 99.8 1.9E-20 6.4E-25 198.1 12.4 154 444-599 14-214 (249)
24 2ff7_A Alpha-hemolysin translo 99.8 2.1E-20 7.3E-25 197.3 12.5 156 442-600 21-225 (247)
25 2ixe_A Antigen peptide transpo 99.8 1.3E-20 4.4E-25 201.6 10.5 155 443-599 32-237 (271)
26 2it1_A 362AA long hypothetical 99.8 2.6E-20 9E-25 206.8 13.1 157 441-599 14-215 (362)
27 1g29_1 MALK, maltose transport 99.8 3.3E-20 1.1E-24 206.8 12.9 158 441-600 14-222 (372)
28 3d31_A Sulfate/molybdate ABC t 99.8 3.6E-20 1.2E-24 204.7 13.0 155 442-599 13-209 (348)
29 2pze_A Cystic fibrosis transme 99.8 1E-20 3.4E-25 197.5 8.0 156 442-600 20-211 (229)
30 2d2e_A SUFC protein; ABC-ATPas 99.8 3.6E-20 1.2E-24 195.8 12.4 157 441-599 14-225 (250)
31 2ihy_A ABC transporter, ATP-bi 99.8 2.6E-20 8.8E-25 200.1 11.4 157 441-599 32-244 (279)
32 1v43_A Sugar-binding transport 99.8 4.7E-20 1.6E-24 205.5 13.3 156 441-599 22-223 (372)
33 1oxx_K GLCV, glucose, ABC tran 99.8 4E-20 1.4E-24 204.8 11.7 156 442-598 15-221 (353)
34 2zu0_C Probable ATP-dependent 99.8 4E-20 1.4E-24 197.4 10.9 157 441-599 31-246 (267)
35 2pjz_A Hypothetical protein ST 99.8 1.1E-19 3.7E-24 193.7 11.9 149 443-599 18-207 (263)
36 1sgw_A Putative ABC transporte 99.8 6.8E-20 2.3E-24 189.6 9.9 144 444-590 23-205 (214)
37 1mv5_A LMRA, multidrug resista 99.8 3.2E-20 1.1E-24 195.4 7.2 152 442-597 14-216 (243)
38 2cbz_A Multidrug resistance-as 99.8 6.9E-20 2.4E-24 192.2 9.2 155 442-599 17-209 (237)
39 2ghi_A Transport protein; mult 99.8 3.5E-19 1.2E-23 189.4 13.2 152 443-599 33-234 (260)
40 2bbs_A Cystic fibrosis transme 99.8 7.4E-20 2.5E-24 197.6 6.2 154 443-599 51-239 (290)
41 3nh6_A ATP-binding cassette SU 99.8 7.7E-19 2.6E-23 191.0 11.4 157 441-600 65-270 (306)
42 3gd7_A Fusion complex of cysti 99.8 9.6E-19 3.3E-23 196.0 10.1 153 441-599 32-234 (390)
43 1yqt_A RNAse L inhibitor; ATP- 99.7 1.5E-17 5.1E-22 194.0 12.0 146 444-593 36-233 (538)
44 3ozx_A RNAse L inhibitor; ATP 99.7 1.6E-17 5.5E-22 193.6 11.9 145 446-593 284-461 (538)
45 3j16_B RLI1P; ribosome recycli 99.7 1.7E-17 5.7E-22 195.7 10.2 147 445-593 362-543 (608)
46 3ux8_A Excinuclease ABC, A sub 99.7 2.7E-17 9.2E-22 196.6 11.8 85 513-599 197-290 (670)
47 2iw3_A Elongation factor 3A; a 99.7 7E-17 2.4E-21 197.7 15.0 152 441-597 446-624 (986)
48 1yqt_A RNAse L inhibitor; ATP- 99.7 6.8E-17 2.3E-21 188.4 14.1 146 445-593 301-477 (538)
49 3b5x_A Lipid A export ATP-bind 99.7 7.1E-17 2.4E-21 190.0 14.4 153 443-599 356-559 (582)
50 3b60_A Lipid A export ATP-bind 99.7 5.6E-17 1.9E-21 190.9 13.1 154 443-599 356-559 (582)
51 3bk7_A ABC transporter ATP-bin 99.7 5.6E-17 1.9E-21 191.5 13.0 146 444-593 106-303 (607)
52 2yl4_A ATP-binding cassette SU 99.7 6.3E-17 2.2E-21 190.9 13.4 155 443-600 357-563 (595)
53 3qf4_B Uncharacterized ABC tra 99.7 6.3E-17 2.2E-21 191.0 12.4 155 442-599 367-570 (598)
54 3bk7_A ABC transporter ATP-bin 99.7 9.1E-17 3.1E-21 189.6 13.7 146 445-593 371-547 (607)
55 3ozx_A RNAse L inhibitor; ATP 99.7 8E-17 2.7E-21 187.7 12.6 143 446-593 16-212 (538)
56 4a82_A Cystic fibrosis transme 99.7 6.7E-17 2.3E-21 190.1 11.7 157 441-600 352-557 (578)
57 3j16_B RLI1P; ribosome recycli 99.7 6E-17 2.1E-21 191.0 10.7 145 445-592 93-295 (608)
58 3qf4_A ABC transporter, ATP-bi 99.7 6.2E-17 2.1E-21 190.7 10.6 157 441-600 354-559 (587)
59 3ux8_A Excinuclease ABC, A sub 99.7 2.5E-16 8.4E-21 188.3 12.7 86 513-600 538-633 (670)
60 4gp7_A Metallophosphoesterase; 99.6 4.7E-17 1.6E-21 161.6 3.6 131 448-583 1-163 (171)
61 2iw3_A Elongation factor 3A; a 99.6 1.6E-16 5.5E-21 194.6 8.5 91 503-598 884-978 (986)
62 4aby_A DNA repair protein RECN 99.6 3.3E-15 1.1E-19 167.7 10.7 109 519-640 296-413 (415)
63 2vf7_A UVRA2, excinuclease ABC 99.6 8.4E-15 2.9E-19 177.7 14.0 86 513-600 725-820 (842)
64 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 2.4E-15 8.1E-20 167.4 8.2 81 515-597 276-363 (365)
65 2ygr_A Uvrabc system protein A 99.5 2.4E-14 8.1E-19 175.0 14.9 87 512-600 857-953 (993)
66 2r6f_A Excinuclease ABC subuni 99.5 2.5E-14 8.4E-19 174.3 13.1 86 512-599 839-934 (972)
67 3pih_A Uvrabc system protein A 99.5 1.9E-14 6.6E-19 175.9 12.0 85 514-600 801-895 (916)
68 3g5u_A MCG1178, multidrug resi 99.5 1.8E-14 6.1E-19 183.4 10.1 154 443-599 1046-1250(1284)
69 3g5u_A MCG1178, multidrug resi 99.5 2.6E-14 9E-19 181.8 10.7 153 443-598 403-604 (1284)
70 1ye8_A Protein THEP1, hypothet 99.4 5.6E-14 1.9E-18 141.0 5.7 126 457-587 2-152 (178)
71 4f4c_A Multidrug resistance pr 99.4 2.7E-13 9.2E-18 173.0 13.4 154 442-599 430-633 (1321)
72 3b85_A Phosphate starvation-in 99.4 2.4E-14 8.2E-19 147.3 2.6 121 453-583 20-162 (208)
73 1e69_A Chromosome segregation 99.4 4.5E-13 1.6E-17 146.2 11.4 78 516-596 217-301 (322)
74 3qkt_A DNA double-strand break 99.4 6.9E-13 2.4E-17 145.8 12.7 74 516-591 246-326 (339)
75 2ehv_A Hypothetical protein PH 99.4 6.1E-13 2.1E-17 137.7 9.7 59 533-592 133-206 (251)
76 4f4c_A Multidrug resistance pr 99.4 5.9E-13 2E-17 169.9 10.8 154 442-599 1091-1296(1321)
77 2npi_A Protein CLP1; CLP1-PCF1 99.4 4.8E-14 1.6E-18 161.3 -0.3 131 448-587 130-313 (460)
78 4a74_A DNA repair and recombin 99.3 1.9E-12 6.4E-17 132.3 6.1 140 453-593 23-199 (231)
79 1znw_A Guanylate kinase, GMP k 99.3 1.8E-13 6E-18 139.6 -2.6 58 532-591 138-201 (207)
80 1cr0_A DNA primase/helicase; R 99.2 9.8E-12 3.4E-16 133.3 8.0 151 442-596 21-237 (296)
81 2w0m_A SSO2452; RECA, SSPF, un 99.2 4.1E-11 1.4E-15 122.1 10.8 139 453-594 21-192 (235)
82 1tf7_A KAIC; homohexamer, hexa 99.2 2.3E-11 8E-16 141.3 7.0 151 440-593 22-209 (525)
83 2cvh_A DNA repair and recombin 99.1 1.3E-10 4.4E-15 117.9 11.5 125 453-580 18-157 (220)
84 1nlf_A Regulatory protein REPA 99.1 5.6E-11 1.9E-15 126.6 7.8 126 453-582 28-184 (279)
85 2pt7_A CAG-ALFA; ATPase, prote 99.1 6.2E-12 2.1E-16 138.0 0.3 129 445-595 160-291 (330)
86 3ec2_A DNA replication protein 99.1 8.5E-11 2.9E-15 116.5 8.2 106 454-579 37-143 (180)
87 1tq4_A IIGP1, interferon-induc 99.1 3E-12 1E-16 144.4 -4.1 144 443-589 36-248 (413)
88 1tf7_A KAIC; homohexamer, hexa 99.1 8.3E-11 2.8E-15 136.7 7.8 136 453-595 279-444 (525)
89 2eyu_A Twitching motility prot 99.1 5E-11 1.7E-15 126.7 5.2 123 446-591 17-145 (261)
90 3b9q_A Chloroplast SRP recepto 99.0 4.2E-10 1.4E-14 122.0 8.8 120 448-579 92-257 (302)
91 3jvv_A Twitching mobility prot 99.0 3.2E-10 1.1E-14 125.7 6.3 121 453-591 121-243 (356)
92 2obl_A ESCN; ATPase, hydrolase 98.9 1.5E-10 5.1E-15 127.9 1.7 145 442-600 58-248 (347)
93 2og2_A Putative signal recogni 98.9 7.5E-10 2.6E-14 122.8 7.1 118 449-579 150-314 (359)
94 2i3b_A HCR-ntpase, human cance 98.9 7.7E-11 2.6E-15 119.3 -1.0 26 455-480 1-26 (189)
95 1n0w_A DNA repair protein RAD5 98.9 2.2E-09 7.5E-14 110.4 8.7 126 453-580 22-175 (243)
96 1f2t_B RAD50 ABC-ATPase; DNA d 98.9 2.3E-09 7.7E-14 104.5 8.3 77 513-591 52-135 (148)
97 1pzn_A RAD51, DNA repair and r 98.9 2.8E-09 9.5E-14 117.8 9.7 126 453-580 129-287 (349)
98 2kjq_A DNAA-related protein; s 98.9 3.5E-09 1.2E-13 102.9 9.2 87 454-578 35-124 (149)
99 2jeo_A Uridine-cytidine kinase 98.9 3.2E-10 1.1E-14 118.5 0.4 38 441-478 10-48 (245)
100 2v9p_A Replication protein E1; 98.8 9.6E-11 3.3E-15 127.2 -7.1 129 443-598 113-257 (305)
101 3asz_A Uridine kinase; cytidin 98.8 2.3E-11 7.7E-16 123.5 -11.5 46 533-579 109-161 (211)
102 3sop_A Neuronal-specific septi 98.7 2.4E-09 8.1E-14 114.3 2.4 23 458-480 5-27 (270)
103 3aez_A Pantothenate kinase; tr 98.7 4.2E-10 1.4E-14 122.6 -3.7 95 453-550 88-209 (312)
104 1z6g_A Guanylate kinase; struc 98.7 8.1E-10 2.8E-14 113.8 -1.3 137 444-582 11-197 (218)
105 2dpy_A FLII, flagellum-specifi 98.7 2.2E-09 7.7E-14 122.0 1.7 145 442-600 144-337 (438)
106 2ewv_A Twitching motility prot 98.7 2.5E-08 8.5E-13 111.1 8.2 115 453-589 134-254 (372)
107 3pih_A Uvrabc system protein A 98.6 3.7E-08 1.3E-12 120.8 8.7 96 502-599 447-552 (916)
108 3szr_A Interferon-induced GTP- 98.6 1.9E-09 6.6E-14 127.4 -2.9 49 533-581 144-198 (608)
109 1s96_A Guanylate kinase, GMP k 98.6 1.9E-08 6.4E-13 104.1 4.3 27 453-479 14-40 (219)
110 2r6f_A Excinuclease ABC subuni 98.6 7.3E-08 2.5E-12 117.8 9.0 96 503-600 488-593 (972)
111 2vf7_A UVRA2, excinuclease ABC 98.6 1E-07 3.5E-12 115.9 9.7 96 502-599 362-467 (842)
112 1lw7_A Transcriptional regulat 98.5 2.3E-08 7.9E-13 110.7 3.5 58 533-591 275-341 (365)
113 2ygr_A Uvrabc system protein A 98.5 8.4E-08 2.9E-12 117.7 8.6 95 503-599 505-609 (993)
114 3lda_A DNA repair protein RAD5 98.5 1.5E-07 5.2E-12 105.7 9.0 125 453-578 176-327 (400)
115 1rj9_A FTSY, signal recognitio 98.5 1.6E-07 5.6E-12 101.8 8.2 27 454-480 101-127 (304)
116 2qnr_A Septin-2, protein NEDD5 98.5 7.2E-08 2.5E-12 104.3 5.2 33 441-478 9-41 (301)
117 2dr3_A UPF0273 protein PH0284; 98.4 5E-07 1.7E-11 92.8 9.8 46 534-580 127-174 (247)
118 1sxj_E Activator 1 40 kDa subu 98.4 3.5E-07 1.2E-11 99.6 8.0 44 533-580 132-175 (354)
119 2qag_C Septin-7; cell cycle, c 98.3 7.3E-08 2.5E-12 108.9 0.5 33 442-479 23-55 (418)
120 2px0_A Flagellar biosynthesis 98.3 4.7E-07 1.6E-11 97.7 6.5 134 452-598 102-246 (296)
121 3kta_B Chromosome segregation 98.3 1E-06 3.4E-11 87.9 8.2 75 515-592 61-140 (173)
122 4ad8_A DNA repair protein RECN 98.2 8.5E-07 2.9E-11 102.7 6.5 117 515-640 393-515 (517)
123 2zr9_A Protein RECA, recombina 98.2 7.4E-06 2.5E-10 90.4 13.1 121 453-579 59-198 (349)
124 2qag_B Septin-6, protein NEDD5 98.2 2.6E-07 8.7E-12 104.5 1.0 47 531-578 172-218 (427)
125 3e70_C DPA, signal recognition 98.1 2.7E-06 9.3E-11 93.1 7.1 27 453-479 127-153 (328)
126 1htw_A HI0065; nucleotide-bind 98.0 3.5E-07 1.2E-11 89.8 -1.5 38 442-479 19-57 (158)
127 2gza_A Type IV secretion syste 98.0 6.7E-07 2.3E-11 99.1 0.1 132 445-591 164-299 (361)
128 2bbw_A Adenylate kinase 4, AK4 98.0 1E-06 3.5E-11 91.7 1.1 23 454-476 26-48 (246)
129 3auy_A DNA double-strand break 98.0 7.3E-06 2.5E-10 90.9 7.7 73 517-592 279-359 (371)
130 1w1w_A Structural maintenance 98.0 5.3E-06 1.8E-10 93.7 6.6 75 516-592 331-410 (430)
131 2yhs_A FTSY, cell division pro 97.9 1.3E-05 4.6E-10 91.9 6.9 35 446-480 283-318 (503)
132 1ls1_A Signal recognition part 97.9 1.4E-05 4.8E-10 86.1 6.5 33 447-480 91-123 (295)
133 1pui_A ENGB, probable GTP-bind 97.8 8.9E-06 3E-10 81.4 3.2 43 526-569 159-201 (210)
134 1fnn_A CDC6P, cell division co 97.8 3.8E-05 1.3E-09 84.0 8.4 121 457-582 46-172 (389)
135 1udx_A The GTP-binding protein 97.8 8.6E-06 3E-10 91.9 3.2 123 446-578 147-308 (416)
136 2o5v_A DNA replication and rep 97.7 2.4E-05 8.2E-10 86.7 5.6 74 518-599 265-348 (359)
137 3tr0_A Guanylate kinase, GMP k 97.7 1.3E-05 4.3E-10 80.2 2.9 26 453-478 5-30 (205)
138 2z4s_A Chromosomal replication 97.7 5.8E-05 2E-09 85.7 7.8 106 456-579 131-237 (440)
139 3lnc_A Guanylate kinase, GMP k 97.7 1.3E-05 4.4E-10 82.5 2.1 34 445-478 16-51 (231)
140 1odf_A YGR205W, hypothetical 3 97.6 9.4E-06 3.2E-10 87.3 1.1 25 454-478 30-54 (290)
141 2ce7_A Cell division protein F 97.6 0.00012 4.1E-09 84.0 10.1 102 458-582 52-167 (476)
142 3hr8_A Protein RECA; alpha and 97.6 0.00022 7.6E-09 78.8 11.6 26 453-478 59-84 (356)
143 1vma_A Cell division protein F 97.6 6.5E-05 2.2E-09 81.4 6.9 27 453-479 102-128 (306)
144 2r6a_A DNAB helicase, replicat 97.6 0.00025 8.4E-09 80.7 11.5 29 453-481 201-229 (454)
145 1v5w_A DMC1, meiotic recombina 97.5 0.0002 6.8E-09 78.6 9.2 125 453-579 120-274 (343)
146 2qby_A CDC6 homolog 1, cell di 97.5 2.1E-05 7E-10 85.7 1.3 125 454-582 44-176 (386)
147 3euj_A Chromosome partition pr 97.5 4.8E-05 1.7E-09 87.3 4.4 37 443-480 17-54 (483)
148 3c8u_A Fructokinase; YP_612366 97.5 4.4E-05 1.5E-09 77.3 3.6 28 453-480 20-47 (208)
149 2ius_A DNA translocase FTSK; n 97.5 0.00015 5.1E-09 83.8 8.0 24 454-477 166-189 (512)
150 3a00_A Guanylate kinase, GMP k 97.5 3.3E-05 1.1E-09 76.8 2.2 24 455-478 1-24 (186)
151 1lvg_A Guanylate kinase, GMP k 97.4 4.5E-05 1.6E-09 76.9 2.2 25 454-478 3-27 (198)
152 3kta_A Chromosome segregation 97.4 8.2E-05 2.8E-09 73.1 3.4 30 448-478 19-49 (182)
153 2w58_A DNAI, primosome compone 97.4 0.0001 3.5E-09 73.7 4.2 23 456-478 55-77 (202)
154 1zp6_A Hypothetical protein AT 97.4 6.8E-05 2.3E-09 74.1 2.8 26 453-478 7-32 (191)
155 3bos_A Putative DNA replicatio 97.3 0.00035 1.2E-08 70.6 8.1 24 455-478 52-75 (242)
156 3pxg_A Negative regulator of g 97.3 0.00081 2.8E-08 76.8 11.1 21 458-478 204-224 (468)
157 3kl4_A SRP54, signal recogniti 97.3 0.00032 1.1E-08 79.5 7.5 26 453-478 95-120 (433)
158 2z43_A DNA repair and recombin 97.2 0.00035 1.2E-08 75.9 6.6 125 453-579 105-258 (324)
159 1l8q_A Chromosomal replication 97.2 0.00033 1.1E-08 75.4 6.4 23 456-478 38-60 (324)
160 1qvr_A CLPB protein; coiled co 97.2 0.0016 5.4E-08 79.9 13.1 23 457-479 193-215 (854)
161 1kgd_A CASK, peripheral plasma 97.2 0.00014 4.8E-09 71.9 2.8 25 454-478 4-28 (180)
162 2e87_A Hypothetical protein PH 97.1 0.00022 7.7E-09 78.4 4.4 115 456-579 168-292 (357)
163 2xau_A PRE-mRNA-splicing facto 97.1 0.00024 8.2E-09 86.2 5.0 54 531-586 204-260 (773)
164 2bdt_A BH3686; alpha-beta prot 97.1 0.00015 5E-09 71.8 2.5 23 455-477 2-24 (189)
165 4eun_A Thermoresistant glucoki 97.1 0.00018 6E-09 72.3 3.0 26 453-478 27-52 (200)
166 3b9p_A CG5977-PA, isoform A; A 97.1 0.0012 4E-08 70.0 9.0 23 455-477 54-76 (297)
167 1sq5_A Pantothenate kinase; P- 97.0 0.00023 8E-09 76.8 3.0 26 453-478 78-103 (308)
168 3vaa_A Shikimate kinase, SK; s 97.0 0.00026 8.8E-09 71.0 2.6 36 442-477 11-47 (199)
169 2j41_A Guanylate kinase; GMP, 97.0 0.00028 9.5E-09 70.3 2.8 25 454-478 5-29 (207)
170 1zu4_A FTSY; GTPase, signal re 96.9 0.0021 7.1E-08 70.0 9.5 33 447-479 96-129 (320)
171 2o5v_A DNA replication and rep 96.9 0.00041 1.4E-08 76.8 3.7 33 446-479 17-50 (359)
172 2qm8_A GTPase/ATPase; G protei 96.9 0.00015 5.1E-09 79.5 0.2 37 443-479 42-79 (337)
173 3tau_A Guanylate kinase, GMP k 96.9 0.00034 1.1E-08 70.9 2.8 25 453-477 6-30 (208)
174 1jbk_A CLPB protein; beta barr 96.9 0.0028 9.5E-08 61.0 8.9 23 455-477 43-65 (195)
175 1u94_A RECA protein, recombina 96.9 0.0033 1.1E-07 69.4 10.5 121 453-579 61-200 (356)
176 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00061 2.1E-08 65.7 3.9 24 455-478 23-46 (149)
177 2vp4_A Deoxynucleoside kinase; 96.8 0.00044 1.5E-08 71.1 2.9 26 453-478 18-43 (230)
178 3uie_A Adenylyl-sulfate kinase 96.8 0.0005 1.7E-08 68.9 3.2 27 453-479 23-49 (200)
179 1kag_A SKI, shikimate kinase I 96.8 0.00042 1.4E-08 67.2 2.3 23 455-477 4-26 (173)
180 1knq_A Gluconate kinase; ALFA/ 96.8 0.00056 1.9E-08 66.6 3.1 25 454-478 7-31 (175)
181 2v1u_A Cell division control p 96.8 0.00061 2.1E-08 74.1 3.7 23 455-477 44-66 (387)
182 1njg_A DNA polymerase III subu 96.8 0.0018 6.2E-08 64.6 6.7 22 456-477 46-67 (250)
183 1p9r_A General secretion pathw 96.7 0.00057 2E-08 77.1 3.3 33 445-478 158-190 (418)
184 2i1q_A DNA repair and recombin 96.7 0.0021 7.3E-08 69.3 7.2 26 453-478 96-121 (322)
185 2p65_A Hypothetical protein PF 96.6 0.003 1E-07 60.9 7.2 22 456-477 44-65 (187)
186 4a1f_A DNAB helicase, replicat 96.6 0.0023 7.8E-08 70.3 6.9 115 453-578 44-165 (338)
187 4e22_A Cytidylate kinase; P-lo 96.5 0.00084 2.9E-08 70.2 2.6 24 453-476 25-48 (252)
188 1qhl_A Protein (cell division 96.5 0.0001 3.5E-09 76.6 -4.4 30 448-479 22-51 (227)
189 1rz3_A Hypothetical protein rb 96.5 0.0011 3.6E-08 66.8 3.2 26 453-478 20-45 (201)
190 2qgz_A Helicase loader, putati 96.5 0.0033 1.1E-07 67.8 7.2 104 455-578 152-257 (308)
191 1nij_A Hypothetical protein YJ 96.5 0.00096 3.3E-08 72.3 2.8 23 456-478 5-27 (318)
192 3qks_A DNA double-strand break 96.4 0.0016 5.5E-08 65.9 3.9 24 455-478 23-46 (203)
193 3h4m_A Proteasome-activating n 96.4 0.0024 8.3E-08 67.0 5.2 22 456-477 52-73 (285)
194 1w1w_A Structural maintenance 96.4 0.0014 4.8E-08 73.8 3.4 30 449-479 21-50 (430)
195 3ney_A 55 kDa erythrocyte memb 96.4 0.0013 4.3E-08 66.9 2.5 24 454-477 18-41 (197)
196 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.011 3.9E-07 64.3 10.2 25 453-477 121-145 (331)
197 1lv7_A FTSH; alpha/beta domain 96.4 0.0042 1.4E-07 64.4 6.6 21 458-478 48-68 (257)
198 4fcw_A Chaperone protein CLPB; 96.3 0.0033 1.1E-07 66.6 5.9 24 456-479 48-71 (311)
199 2oap_1 GSPE-2, type II secreti 96.3 0.001 3.5E-08 76.9 2.0 34 445-478 249-283 (511)
200 3cf0_A Transitional endoplasmi 96.3 0.0044 1.5E-07 66.3 6.7 24 454-477 48-71 (301)
201 2x8a_A Nuclear valosin-contain 96.3 0.00057 1.9E-08 72.6 -0.3 33 444-478 34-67 (274)
202 1u0l_A Probable GTPase ENGC; p 96.3 0.0011 3.8E-08 71.3 2.0 23 454-476 168-190 (301)
203 1ypw_A Transitional endoplasmi 96.3 0.0035 1.2E-07 76.4 6.3 24 454-477 237-260 (806)
204 2b8t_A Thymidine kinase; deoxy 96.3 0.0054 1.8E-07 63.4 6.7 124 453-591 10-149 (223)
205 3tqc_A Pantothenate kinase; bi 96.2 0.0016 5.4E-08 71.0 2.8 23 456-478 93-115 (321)
206 2yv5_A YJEQ protein; hydrolase 96.2 0.0014 5E-08 70.5 2.4 23 454-476 164-186 (302)
207 3nwj_A ATSK2; P loop, shikimat 96.2 0.00039 1.3E-08 73.1 -2.0 37 441-477 30-70 (250)
208 3k1j_A LON protease, ATP-depen 96.2 0.00081 2.8E-08 79.3 0.3 41 439-479 43-84 (604)
209 3lxx_A GTPase IMAP family memb 96.2 0.0033 1.1E-07 64.5 4.8 46 532-578 109-155 (239)
210 1jjv_A Dephospho-COA kinase; P 96.2 0.0016 5.4E-08 65.2 2.3 21 457-477 4-24 (206)
211 2rcn_A Probable GTPase ENGC; Y 96.2 0.0016 5.3E-08 72.1 2.2 24 453-476 213-236 (358)
212 1svm_A Large T antigen; AAA+ f 96.2 0.00075 2.6E-08 75.2 -0.4 34 444-477 157-191 (377)
213 3t15_A Ribulose bisphosphate c 96.1 0.0063 2.1E-07 65.0 6.6 22 456-477 37-58 (293)
214 3llm_A ATP-dependent RNA helic 96.1 0.0068 2.3E-07 62.2 6.6 23 454-476 75-97 (235)
215 2if2_A Dephospho-COA kinase; a 96.1 0.002 7E-08 64.2 2.4 21 457-477 3-23 (204)
216 1cke_A CK, MSSA, protein (cyti 96.0 0.0024 8E-08 64.7 2.5 22 456-477 6-27 (227)
217 2dy1_A Elongation factor G; tr 96.0 0.0054 1.8E-07 73.2 5.8 42 533-581 97-138 (665)
218 3auy_A DNA double-strand break 96.0 0.0043 1.5E-07 68.5 4.6 33 448-480 18-50 (371)
219 2qt1_A Nicotinamide riboside k 96.0 0.0027 9.4E-08 63.6 2.8 25 453-477 19-43 (207)
220 1in4_A RUVB, holliday junction 96.0 0.00075 2.6E-08 73.5 -1.6 23 456-478 52-74 (334)
221 1xp8_A RECA protein, recombina 95.9 0.03 1E-06 62.0 11.2 25 453-477 72-96 (366)
222 1t9h_A YLOQ, probable GTPase E 95.9 0.0011 3.8E-08 71.8 -0.8 24 454-477 172-195 (307)
223 1ixz_A ATP-dependent metallopr 95.9 0.0013 4.3E-08 68.2 -0.4 32 445-478 40-72 (254)
224 2pez_A Bifunctional 3'-phospho 95.9 0.0033 1.1E-07 61.4 2.7 25 454-478 4-28 (179)
225 2f1r_A Molybdopterin-guanine d 95.8 0.0018 6.1E-08 64.2 0.7 23 456-478 3-25 (171)
226 2q6t_A DNAB replication FORK h 95.8 0.022 7.4E-07 64.5 9.7 28 453-480 198-225 (444)
227 1oix_A RAS-related protein RAB 95.8 0.0031 1.1E-07 62.3 2.4 22 457-478 31-52 (191)
228 3bh0_A DNAB-like replicative h 95.8 0.013 4.5E-07 63.3 7.2 92 453-546 66-162 (315)
229 3d8b_A Fidgetin-like protein 1 95.8 0.012 4.1E-07 64.6 6.9 23 455-477 117-139 (357)
230 2f9l_A RAB11B, member RAS onco 95.7 0.0033 1.1E-07 62.3 2.2 21 458-478 8-28 (199)
231 2r8r_A Sensor protein; KDPD, P 95.7 0.0052 1.8E-07 63.7 3.7 50 534-584 83-132 (228)
232 3dm5_A SRP54, signal recogniti 95.7 0.014 4.7E-07 66.3 7.3 24 454-477 99-122 (443)
233 1iy2_A ATP-dependent metallopr 95.7 0.0016 5.4E-08 68.7 -0.4 32 445-478 64-96 (278)
234 3syl_A Protein CBBX; photosynt 95.7 0.053 1.8E-06 57.3 11.5 24 455-478 67-90 (309)
235 1sxj_D Activator 1 41 kDa subu 95.7 0.016 5.6E-07 62.2 7.5 22 458-479 61-82 (353)
236 2dhr_A FTSH; AAA+ protein, hex 95.7 0.019 6.4E-07 66.2 8.3 21 458-478 67-87 (499)
237 3pxi_A Negative regulator of g 95.7 0.043 1.5E-06 66.2 11.9 21 458-478 204-224 (758)
238 2orw_A Thymidine kinase; TMTK, 95.6 0.019 6.6E-07 57.1 7.1 21 455-475 3-23 (184)
239 2ffh_A Protein (FFH); SRP54, s 95.6 0.011 3.7E-07 66.8 5.8 31 448-479 92-122 (425)
240 2qor_A Guanylate kinase; phosp 95.5 0.0044 1.5E-07 62.2 2.2 25 453-477 10-34 (204)
241 3io5_A Recombination and repai 95.5 0.057 1.9E-06 58.8 10.9 120 454-580 28-173 (333)
242 4ad8_A DNA repair protein RECN 95.5 0.0028 9.4E-08 73.3 0.6 32 446-478 51-83 (517)
243 3cr8_A Sulfate adenylyltranfer 95.5 0.0041 1.4E-07 72.6 1.9 27 453-479 367-393 (552)
244 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.046 1.6E-06 56.1 9.2 22 456-477 40-61 (262)
245 3t61_A Gluconokinase; PSI-biol 95.3 0.0055 1.9E-07 61.1 1.9 23 455-477 18-40 (202)
246 1w5s_A Origin recognition comp 95.3 0.021 7.1E-07 62.7 6.7 23 455-477 50-74 (412)
247 3pfi_A Holliday junction ATP-d 95.1 0.037 1.3E-06 59.5 8.1 21 457-477 57-77 (338)
248 3eie_A Vacuolar protein sortin 95.1 0.031 1.1E-06 60.1 7.4 22 456-477 52-73 (322)
249 3cmw_A Protein RECA, recombina 95.1 0.065 2.2E-06 69.7 11.3 120 453-578 730-868 (1706)
250 3cm0_A Adenylate kinase; ATP-b 95.1 0.0086 2.9E-07 58.5 2.5 23 454-476 3-25 (186)
251 4eaq_A DTMP kinase, thymidylat 95.1 0.0088 3E-07 61.7 2.7 25 453-477 24-48 (229)
252 1y63_A LMAJ004144AAA protein; 95.0 0.0092 3.2E-07 58.8 2.6 28 450-477 4-32 (184)
253 4b4t_L 26S protease subunit RP 95.0 0.088 3E-06 59.6 10.9 22 456-477 216-237 (437)
254 2yvu_A Probable adenylyl-sulfa 95.0 0.01 3.4E-07 58.4 2.8 25 453-477 11-35 (186)
255 2chg_A Replication factor C sm 95.0 0.091 3.1E-06 51.5 9.8 20 458-477 41-60 (226)
256 1jr3_A DNA polymerase III subu 94.8 0.029 1E-06 60.7 6.2 22 456-477 39-60 (373)
257 1j8m_F SRP54, signal recogniti 94.8 0.037 1.3E-06 59.4 6.9 31 449-479 92-122 (297)
258 3hu3_A Transitional endoplasmi 94.8 0.028 9.6E-07 64.6 6.2 22 456-477 239-260 (489)
259 3vfd_A Spastin; ATPase, microt 94.8 0.044 1.5E-06 60.6 7.6 23 455-477 148-170 (389)
260 1sxj_A Activator 1 95 kDa subu 94.8 0.028 9.7E-07 64.8 6.2 22 456-477 78-99 (516)
261 3kb2_A SPBC2 prophage-derived 94.8 0.011 3.7E-07 56.7 2.3 20 457-476 3-22 (173)
262 1xwi_A SKD1 protein; VPS4B, AA 94.7 0.039 1.3E-06 59.7 6.7 22 456-477 46-67 (322)
263 2www_A Methylmalonic aciduria 94.7 0.013 4.5E-07 64.3 2.9 25 454-478 73-97 (349)
264 1ni3_A YCHF GTPase, YCHF GTP-b 94.7 0.012 4.2E-07 65.7 2.7 56 535-594 139-199 (392)
265 2zts_A Putative uncharacterize 94.7 0.13 4.3E-06 52.2 10.1 46 533-579 133-182 (251)
266 1d2n_A N-ethylmaleimide-sensit 94.6 0.037 1.3E-06 57.7 6.2 22 456-477 65-86 (272)
267 3co5_A Putative two-component 94.6 0.088 3E-06 49.7 8.3 19 458-476 30-48 (143)
268 1q3t_A Cytidylate kinase; nucl 94.6 0.013 4.6E-07 60.0 2.6 25 453-477 14-38 (236)
269 4b4t_K 26S protease regulatory 94.6 0.13 4.6E-06 58.0 10.9 22 456-477 207-228 (428)
270 1m7g_A Adenylylsulfate kinase; 94.5 0.016 5.3E-07 58.4 2.8 25 454-478 24-48 (211)
271 2qp9_X Vacuolar protein sortin 94.4 0.045 1.6E-06 60.0 6.6 22 456-477 85-106 (355)
272 3bgw_A DNAB-like replicative h 94.4 0.23 7.7E-06 56.3 12.4 27 453-479 195-221 (444)
273 3n70_A Transport activator; si 94.4 0.036 1.2E-06 52.5 4.9 19 458-476 27-45 (145)
274 4b4t_J 26S protease regulatory 94.3 0.073 2.5E-06 59.6 7.9 20 458-477 185-204 (405)
275 3lw7_A Adenylate kinase relate 94.3 0.016 5.6E-07 55.1 2.3 20 456-475 2-21 (179)
276 1vht_A Dephospho-COA kinase; s 94.2 0.02 6.7E-07 57.7 2.8 23 455-477 4-26 (218)
277 1qhx_A CPT, protein (chloramph 94.2 0.018 6.1E-07 55.8 2.4 22 455-476 3-24 (178)
278 1np6_A Molybdopterin-guanine d 94.2 0.017 5.9E-07 57.2 2.3 22 456-477 7-28 (174)
279 2orv_A Thymidine kinase; TP4A 94.2 0.073 2.5E-06 55.2 7.0 121 453-592 17-150 (234)
280 2zan_A Vacuolar protein sortin 94.1 0.032 1.1E-06 63.1 4.7 22 456-477 168-189 (444)
281 1ex7_A Guanylate kinase; subst 94.1 0.015 5.2E-07 58.3 1.8 20 456-475 2-21 (186)
282 2ze6_A Isopentenyl transferase 94.1 0.019 6.4E-07 60.0 2.5 22 456-477 2-23 (253)
283 1xx6_A Thymidine kinase; NESG, 94.1 0.059 2E-06 54.1 6.0 120 453-591 6-141 (191)
284 1ypw_A Transitional endoplasmi 94.0 0.013 4.6E-07 71.3 1.4 25 454-478 510-534 (806)
285 1kht_A Adenylate kinase; phosp 94.0 0.021 7.1E-07 55.6 2.5 23 455-477 3-25 (192)
286 2p67_A LAO/AO transport system 94.0 0.025 8.6E-07 61.7 3.3 26 453-478 54-79 (341)
287 2rhm_A Putative kinase; P-loop 93.9 0.024 8.4E-07 55.4 2.8 23 454-476 4-26 (193)
288 1g5t_A COB(I)alamin adenosyltr 93.9 0.26 9E-06 49.8 10.4 60 527-591 110-177 (196)
289 4b4t_M 26S protease regulatory 93.9 0.13 4.6E-06 58.0 9.2 22 456-477 216-237 (434)
290 2wji_A Ferrous iron transport 93.9 0.021 7.2E-07 54.6 2.2 21 457-477 5-25 (165)
291 2p5t_B PEZT; postsegregational 93.9 0.02 7E-07 59.5 2.2 25 453-477 30-54 (253)
292 1via_A Shikimate kinase; struc 93.8 0.02 6.8E-07 55.6 1.9 21 457-477 6-26 (175)
293 1iqp_A RFCS; clamp loader, ext 93.8 0.1 3.5E-06 55.1 7.7 20 458-477 49-68 (327)
294 2gj8_A MNME, tRNA modification 93.8 0.024 8.4E-07 54.8 2.5 23 455-477 4-26 (172)
295 1hqc_A RUVB; extended AAA-ATPa 93.8 0.15 5E-06 54.1 8.9 22 456-477 39-60 (324)
296 1uf9_A TT1252 protein; P-loop, 93.8 0.027 9.1E-07 55.6 2.8 24 454-477 7-30 (203)
297 1ly1_A Polynucleotide kinase; 93.7 0.025 8.6E-07 54.5 2.5 22 456-477 3-24 (181)
298 4ag6_A VIRB4 ATPase, type IV s 93.7 0.081 2.8E-06 58.5 6.9 25 455-479 35-59 (392)
299 1ega_A Protein (GTP-binding pr 93.7 0.021 7.4E-07 61.1 2.1 23 455-477 8-30 (301)
300 3pvs_A Replication-associated 93.7 0.077 2.6E-06 60.2 6.8 21 457-477 52-72 (447)
301 2wjg_A FEOB, ferrous iron tran 93.7 0.023 7.7E-07 55.1 2.1 21 457-477 9-29 (188)
302 3cmw_A Protein RECA, recombina 93.7 0.2 7E-06 65.2 11.3 120 453-578 381-519 (1706)
303 1gvn_B Zeta; postsegregational 93.7 0.03 1E-06 59.7 3.1 23 454-476 32-54 (287)
304 2qby_B CDC6 homolog 3, cell di 93.6 0.091 3.1E-06 57.0 7.0 23 455-477 45-67 (384)
305 4b4t_I 26S protease regulatory 93.5 0.23 7.9E-06 56.0 10.1 22 456-477 217-238 (437)
306 2jaq_A Deoxyguanosine kinase; 93.5 0.027 9.4E-07 55.4 2.4 21 457-477 2-22 (205)
307 1q57_A DNA primase/helicase; d 93.5 0.16 5.6E-06 58.1 9.1 26 453-478 240-265 (503)
308 3uk6_A RUVB-like 2; hexameric 93.5 0.15 5.3E-06 55.1 8.5 24 455-478 70-93 (368)
309 3m6a_A ATP-dependent protease 93.5 0.03 1E-06 65.1 2.9 26 454-479 107-132 (543)
310 1sxj_C Activator 1 40 kDa subu 93.4 0.012 4E-07 63.8 -0.6 27 453-479 42-70 (340)
311 1w4r_A Thymidine kinase; type 93.4 0.027 9.3E-07 57.0 2.0 109 453-582 18-130 (195)
312 2lw1_A ABC transporter ATP-bin 93.3 0.37 1.3E-05 42.4 9.0 58 641-698 21-84 (89)
313 3iij_A Coilin-interacting nucl 93.2 0.031 1E-06 54.4 2.1 22 455-476 11-32 (180)
314 3cmu_A Protein RECA, recombina 93.2 0.21 7E-06 66.0 10.2 25 453-477 1425-1449(2050)
315 3u61_B DNA polymerase accessor 93.1 0.11 3.6E-06 55.5 6.3 22 456-477 49-70 (324)
316 2iut_A DNA translocase FTSK; n 93.1 0.12 4E-06 60.4 7.0 22 456-477 215-236 (574)
317 2zej_A Dardarin, leucine-rich 93.1 0.032 1.1E-06 54.4 2.0 20 458-477 5-24 (184)
318 1gtv_A TMK, thymidylate kinase 93.1 0.018 6.1E-07 57.5 0.2 21 457-477 2-22 (214)
319 1tev_A UMP-CMP kinase; ploop, 92.9 0.041 1.4E-06 53.6 2.6 22 455-476 3-24 (196)
320 3r20_A Cytidylate kinase; stru 92.9 0.037 1.3E-06 57.5 2.3 21 456-476 10-30 (233)
321 2c95_A Adenylate kinase 1; tra 92.9 0.042 1.4E-06 53.8 2.6 23 454-476 8-30 (196)
322 3ake_A Cytidylate kinase; CMP 92.9 0.039 1.3E-06 54.6 2.3 21 457-477 4-24 (208)
323 2bjv_A PSP operon transcriptio 92.9 0.048 1.6E-06 56.6 3.1 21 457-477 31-51 (265)
324 2v54_A DTMP kinase, thymidylat 92.8 0.043 1.5E-06 54.2 2.5 23 455-477 4-26 (204)
325 2plr_A DTMP kinase, probable t 92.8 0.046 1.6E-06 54.1 2.7 23 455-477 4-26 (213)
326 1qvr_A CLPB protein; coiled co 92.7 0.089 3E-06 64.4 5.7 24 456-479 589-612 (854)
327 1m2o_B GTP-binding protein SAR 92.7 0.044 1.5E-06 53.8 2.4 33 445-477 13-45 (190)
328 2vli_A Antibiotic resistance p 92.7 0.041 1.4E-06 53.3 2.2 22 455-476 5-26 (183)
329 3trf_A Shikimate kinase, SK; a 92.7 0.044 1.5E-06 53.4 2.4 22 455-476 5-26 (185)
330 3cmu_A Protein RECA, recombina 92.7 0.26 8.9E-06 65.1 10.1 25 453-477 381-405 (2050)
331 1nks_A Adenylate kinase; therm 92.7 0.046 1.6E-06 53.1 2.5 21 457-477 3-23 (194)
332 2z0h_A DTMP kinase, thymidylat 92.6 0.044 1.5E-06 53.7 2.3 21 457-477 2-22 (197)
333 2wwf_A Thymidilate kinase, put 92.5 0.052 1.8E-06 53.9 2.6 24 454-477 9-32 (212)
334 1nn5_A Similar to deoxythymidy 92.3 0.055 1.9E-06 53.8 2.6 24 454-477 8-31 (215)
335 2qen_A Walker-type ATPase; unk 92.3 0.29 1E-05 51.9 8.5 21 456-476 32-52 (350)
336 3lxw_A GTPase IMAP family memb 92.2 0.055 1.9E-06 56.1 2.5 19 458-476 24-42 (247)
337 1xjc_A MOBB protein homolog; s 92.2 0.054 1.8E-06 53.5 2.2 21 456-476 5-25 (169)
338 4b4t_H 26S protease regulatory 92.1 0.33 1.1E-05 55.3 8.8 22 456-477 244-265 (467)
339 2j9r_A Thymidine kinase; TK1, 92.0 0.17 5.7E-06 51.9 5.8 123 453-592 26-162 (214)
340 1ojl_A Transcriptional regulat 92.0 0.12 4.2E-06 55.3 4.9 21 457-477 27-47 (304)
341 1qf9_A UMP/CMP kinase, protein 91.9 0.067 2.3E-06 52.0 2.6 21 456-476 7-27 (194)
342 2v3c_C SRP54, signal recogniti 91.7 0.068 2.3E-06 60.4 2.7 24 455-478 99-122 (432)
343 2bwj_A Adenylate kinase 5; pho 91.7 0.068 2.3E-06 52.4 2.4 22 455-476 12-33 (199)
344 3te6_A Regulatory protein SIR3 91.7 0.16 5.5E-06 55.1 5.5 24 454-477 44-67 (318)
345 3cf2_A TER ATPase, transitiona 91.7 0.26 8.9E-06 59.9 7.9 21 456-476 239-259 (806)
346 1a7j_A Phosphoribulokinase; tr 91.7 0.066 2.3E-06 57.2 2.4 23 455-477 5-27 (290)
347 2pbr_A DTMP kinase, thymidylat 91.5 0.074 2.5E-06 51.8 2.4 21 457-477 2-22 (195)
348 1e6c_A Shikimate kinase; phosp 91.5 0.063 2.2E-06 51.5 1.9 21 456-476 3-23 (173)
349 1ukz_A Uridylate kinase; trans 91.5 0.084 2.9E-06 52.3 2.8 23 454-476 14-36 (203)
350 1a5t_A Delta prime, HOLB; zinc 91.5 0.27 9.2E-06 53.1 7.0 23 456-478 25-47 (334)
351 3e2i_A Thymidine kinase; Zn-bi 91.4 0.56 1.9E-05 48.2 8.8 123 453-592 26-162 (219)
352 1sxj_B Activator 1 37 kDa subu 91.3 0.17 5.9E-06 53.2 5.2 20 458-477 45-64 (323)
353 3fb4_A Adenylate kinase; psych 91.2 0.081 2.8E-06 52.9 2.3 20 457-476 2-21 (216)
354 3a4m_A L-seryl-tRNA(SEC) kinas 91.1 0.09 3.1E-06 54.8 2.7 23 455-477 4-26 (260)
355 1f6b_A SAR1; gtpases, N-termin 91.1 0.033 1.1E-06 55.1 -0.6 31 445-476 15-46 (198)
356 1zd8_A GTP:AMP phosphotransfer 91.1 0.083 2.8E-06 53.6 2.4 22 455-476 7-28 (227)
357 2pt5_A Shikimate kinase, SK; a 91.1 0.087 3E-06 50.3 2.4 21 457-477 2-22 (168)
358 2qtf_A Protein HFLX, GTP-bindi 91.0 0.075 2.6E-06 58.6 2.1 23 456-478 180-202 (364)
359 2ga8_A Hypothetical 39.9 kDa p 91.0 0.087 3E-06 58.0 2.5 21 458-478 27-47 (359)
360 1zak_A Adenylate kinase; ATP:A 90.9 0.083 2.8E-06 53.3 2.2 21 456-476 6-26 (222)
361 1aky_A Adenylate kinase; ATP:A 90.8 0.096 3.3E-06 52.8 2.5 24 454-477 3-26 (220)
362 3k53_A Ferrous iron transport 90.8 0.08 2.7E-06 55.4 2.0 21 457-477 5-25 (271)
363 3ld9_A DTMP kinase, thymidylat 90.8 0.42 1.4E-05 49.2 7.3 25 453-477 19-43 (223)
364 2iyv_A Shikimate kinase, SK; t 90.7 0.082 2.8E-06 51.5 1.8 21 456-476 3-23 (184)
365 1mky_A Probable GTP-binding pr 90.7 0.082 2.8E-06 59.6 2.1 21 457-477 182-202 (439)
366 3dl0_A Adenylate kinase; phosp 90.7 0.095 3.2E-06 52.5 2.3 19 458-476 3-21 (216)
367 2xb4_A Adenylate kinase; ATP-b 90.5 0.1 3.5E-06 53.0 2.4 20 457-476 2-21 (223)
368 2eqb_B RAB guanine nucleotide 90.4 5.9 0.0002 35.3 13.2 70 645-721 8-77 (97)
369 2cdn_A Adenylate kinase; phosp 90.4 0.12 4E-06 51.3 2.6 23 454-476 19-41 (201)
370 1moz_A ARL1, ADP-ribosylation 90.3 0.09 3.1E-06 50.4 1.7 20 457-476 20-39 (183)
371 2ged_A SR-beta, signal recogni 90.1 0.11 3.9E-06 50.4 2.2 21 457-477 50-70 (193)
372 3t34_A Dynamin-related protein 90.0 0.13 4.4E-06 56.2 2.7 33 444-478 25-57 (360)
373 2grj_A Dephospho-COA kinase; T 89.9 0.12 4.2E-06 51.7 2.3 25 453-477 10-34 (192)
374 1fzq_A ADP-ribosylation factor 89.9 0.11 3.9E-06 50.3 2.0 20 457-476 18-37 (181)
375 1uj2_A Uridine-cytidine kinase 89.8 0.14 4.8E-06 52.9 2.7 22 456-477 23-44 (252)
376 2f6r_A COA synthase, bifunctio 89.8 0.12 4.2E-06 54.6 2.3 22 455-476 75-96 (281)
377 1zuh_A Shikimate kinase; alpha 89.7 0.13 4.5E-06 49.3 2.3 21 456-476 8-28 (168)
378 1ltq_A Polynucleotide kinase; 89.7 0.13 4.5E-06 54.2 2.5 22 456-477 3-24 (301)
379 2qag_A Septin-2, protein NEDD5 89.6 0.099 3.4E-06 57.5 1.5 19 458-476 40-58 (361)
380 3ice_A Transcription terminati 89.5 0.11 3.7E-06 58.0 1.7 32 448-479 166-198 (422)
381 2a5y_B CED-4; apoptosis; HET: 89.4 0.72 2.5E-05 53.3 8.7 22 455-476 152-173 (549)
382 1r6b_X CLPA protein; AAA+, N-t 89.2 0.21 7.3E-06 60.0 4.1 23 456-478 208-230 (758)
383 1sky_E F1-ATPase, F1-ATP synth 89.2 0.58 2E-05 53.3 7.4 25 454-478 150-174 (473)
384 2dyk_A GTP-binding protein; GT 89.1 0.15 5.3E-06 47.4 2.2 19 458-476 4-22 (161)
385 1z2a_A RAS-related protein RAB 89.0 0.14 4.9E-06 47.9 2.0 19 458-476 8-26 (168)
386 3tlx_A Adenylate kinase 2; str 89.0 0.18 6.1E-06 52.1 2.8 22 455-476 29-50 (243)
387 2ce2_X GTPase HRAS; signaling 89.0 0.15 5E-06 47.4 2.0 19 458-476 6-24 (166)
388 1e4v_A Adenylate kinase; trans 88.9 0.16 5.4E-06 51.0 2.3 20 458-477 3-22 (214)
389 4edh_A DTMP kinase, thymidylat 88.9 0.18 6E-06 51.4 2.6 23 454-476 5-27 (213)
390 3v9p_A DTMP kinase, thymidylat 88.5 0.18 6.3E-06 51.9 2.5 23 454-476 24-46 (227)
391 1kao_A RAP2A; GTP-binding prot 88.5 0.17 5.7E-06 47.2 2.0 19 458-476 6-24 (167)
392 3pxi_A Negative regulator of g 88.5 0.53 1.8E-05 56.6 6.9 23 457-479 523-545 (758)
393 1ek0_A Protein (GTP-binding pr 88.5 0.17 5.7E-06 47.5 2.0 19 458-476 6-24 (170)
394 1u8z_A RAS-related protein RAL 88.5 0.17 5.7E-06 47.2 2.0 19 458-476 7-25 (168)
395 1z0j_A RAB-22, RAS-related pro 88.4 0.17 5.8E-06 47.5 2.0 19 458-476 9-27 (170)
396 3tw8_B RAS-related protein RAB 88.4 0.17 5.9E-06 48.0 2.0 19 458-476 12-30 (181)
397 3q72_A GTP-binding protein RAD 88.4 0.17 5.8E-06 47.5 2.0 19 458-476 5-23 (166)
398 1ky3_A GTP-binding protein YPT 88.3 0.17 5.8E-06 48.1 2.0 19 458-476 11-29 (182)
399 2erx_A GTP-binding protein DI- 88.3 0.17 5.9E-06 47.4 2.0 19 458-476 6-24 (172)
400 2qmh_A HPR kinase/phosphorylas 88.3 0.33 1.1E-05 49.3 4.1 31 445-475 24-54 (205)
401 1z08_A RAS-related protein RAB 88.2 0.18 6.1E-06 47.5 2.0 19 458-476 9-27 (170)
402 1g16_A RAS-related protein SEC 88.2 0.18 6.1E-06 47.4 2.0 19 458-476 6-24 (170)
403 1c1y_A RAS-related protein RAP 88.1 0.18 6.3E-06 47.1 2.0 19 458-476 6-24 (167)
404 1wms_A RAB-9, RAB9, RAS-relate 88.1 0.18 6.2E-06 47.8 2.0 19 458-476 10-28 (177)
405 3q85_A GTP-binding protein REM 88.1 0.18 6.3E-06 47.4 2.0 19 458-476 5-23 (169)
406 3zvl_A Bifunctional polynucleo 88.0 0.2 6.7E-06 56.2 2.6 24 453-476 256-279 (416)
407 1z6t_A APAF-1, apoptotic prote 88.0 0.76 2.6E-05 53.1 7.6 23 454-476 146-168 (591)
408 1svi_A GTP-binding protein YSX 87.9 0.18 6.2E-06 48.8 2.0 21 457-477 25-45 (195)
409 2nzj_A GTP-binding protein REM 87.9 0.19 6.4E-06 47.5 2.0 19 458-476 7-25 (175)
410 3lv8_A DTMP kinase, thymidylat 87.9 0.21 7.1E-06 51.8 2.5 24 454-477 26-49 (236)
411 3pqc_A Probable GTP-binding pr 87.9 0.18 6.3E-06 48.5 2.0 20 457-476 25-44 (195)
412 1w36_D RECD, exodeoxyribonucle 87.9 0.41 1.4E-05 56.4 5.2 23 454-476 163-185 (608)
413 3d3q_A TRNA delta(2)-isopenten 87.8 0.21 7.1E-06 54.7 2.5 22 456-477 8-29 (340)
414 3nbx_X ATPase RAVA; AAA+ ATPas 87.8 0.42 1.4E-05 55.0 5.2 21 457-477 43-63 (500)
415 1upt_A ARL1, ADP-ribosylation 87.8 0.19 6.6E-06 47.2 2.0 19 458-476 10-28 (171)
416 1r6b_X CLPA protein; AAA+, N-t 87.8 0.56 1.9E-05 56.3 6.5 23 457-479 490-512 (758)
417 4tmk_A Protein (thymidylate ki 87.7 0.22 7.6E-06 50.7 2.5 22 455-476 3-24 (213)
418 2lkc_A Translation initiation 87.7 0.24 8.1E-06 47.1 2.6 21 456-476 9-29 (178)
419 3be4_A Adenylate kinase; malar 87.7 0.22 7.4E-06 50.2 2.4 23 455-477 5-27 (217)
420 2cxx_A Probable GTP-binding pr 87.7 0.19 6.7E-06 48.2 2.0 19 458-476 4-22 (190)
421 3exa_A TRNA delta(2)-isopenten 87.6 0.23 7.8E-06 53.9 2.6 22 455-476 3-24 (322)
422 2ocp_A DGK, deoxyguanosine kin 87.6 0.24 8.1E-06 50.7 2.7 22 455-476 2-23 (241)
423 2fn4_A P23, RAS-related protei 87.5 0.22 7.5E-06 47.3 2.2 20 458-477 12-31 (181)
424 2h92_A Cytidylate kinase; ross 87.3 0.2 6.9E-06 50.1 1.9 21 456-476 4-24 (219)
425 3crm_A TRNA delta(2)-isopenten 87.3 0.24 8.2E-06 53.9 2.5 21 456-476 6-26 (323)
426 2ohf_A Protein OLA1, GTP-bindi 87.2 0.2 6.8E-06 56.0 1.9 24 455-478 22-45 (396)
427 1nz9_A Transcription antitermi 87.2 0.8 2.7E-05 36.8 5.0 46 797-842 4-56 (58)
428 3b1v_A Ferrous iron uptake tra 87.2 0.2 6.9E-06 52.8 1.9 21 457-477 5-25 (272)
429 4dsu_A GTPase KRAS, isoform 2B 87.1 0.22 7.6E-06 47.7 2.0 19 458-476 7-25 (189)
430 2oil_A CATX-8, RAS-related pro 87.1 0.24 8E-06 48.1 2.2 20 458-477 28-47 (193)
431 2y8e_A RAB-protein 6, GH09086P 87.1 0.22 7.6E-06 47.1 2.0 19 458-476 17-35 (179)
432 1r2q_A RAS-related protein RAB 87.1 0.23 7.8E-06 46.5 2.0 19 458-476 9-27 (170)
433 3ihw_A Centg3; RAS, centaurin, 87.0 0.23 7.9E-06 48.3 2.0 19 458-476 23-41 (184)
434 3bc1_A RAS-related protein RAB 86.9 0.23 7.9E-06 47.6 2.0 19 458-476 14-32 (195)
435 2a9k_A RAS-related protein RAL 86.9 0.23 8E-06 47.3 2.0 19 458-476 21-39 (187)
436 1nrj_B SR-beta, signal recogni 86.9 0.24 8.3E-06 49.1 2.2 20 457-476 14-33 (218)
437 3umf_A Adenylate kinase; rossm 86.8 0.3 1E-05 50.0 2.9 24 453-476 27-50 (217)
438 1ak2_A Adenylate kinase isoenz 86.8 0.28 9.5E-06 50.0 2.6 24 454-477 15-38 (233)
439 1r8s_A ADP-ribosylation factor 86.8 0.24 8.3E-06 46.3 2.0 20 458-477 3-22 (164)
440 3foz_A TRNA delta(2)-isopenten 86.8 0.28 9.4E-06 53.1 2.6 22 455-476 10-31 (316)
441 1p5z_B DCK, deoxycytidine kina 86.7 0.28 9.4E-06 51.0 2.6 24 453-476 22-45 (263)
442 2bme_A RAB4A, RAS-related prot 86.7 0.24 8.2E-06 47.5 2.0 19 458-476 13-31 (186)
443 1z0f_A RAB14, member RAS oncog 86.7 0.25 8.4E-06 46.8 2.0 19 458-476 18-36 (179)
444 3t1o_A Gliding protein MGLA; G 86.6 0.26 8.9E-06 47.4 2.2 19 458-476 17-35 (198)
445 2gno_A DNA polymerase III, gam 86.6 1.1 3.8E-05 48.0 7.3 22 456-477 19-40 (305)
446 3cbq_A GTP-binding protein REM 86.5 0.25 8.4E-06 48.7 2.0 19 458-476 26-44 (195)
447 3clv_A RAB5 protein, putative; 86.4 0.27 9.4E-06 47.3 2.2 20 458-477 10-29 (208)
448 1m7b_A RND3/RHOE small GTP-bin 86.4 0.25 8.7E-06 47.6 2.0 20 458-477 10-29 (184)
449 3tqf_A HPR(Ser) kinase; transf 86.4 0.41 1.4E-05 47.6 3.4 30 446-475 7-36 (181)
450 2hxs_A RAB-26, RAS-related pro 86.3 0.26 8.9E-06 46.8 2.0 20 458-477 9-28 (178)
451 2wsm_A Hydrogenase expression/ 86.3 0.31 1.1E-05 48.5 2.6 22 456-477 31-52 (221)
452 3kkq_A RAS-related protein M-R 86.3 0.26 9E-06 47.2 2.0 19 458-476 21-39 (183)
453 3con_A GTPase NRAS; structural 86.2 0.27 9.1E-06 47.5 2.0 19 458-476 24-42 (190)
454 2efe_B Small GTP-binding prote 86.1 0.28 9.4E-06 46.7 2.0 19 458-476 15-33 (181)
455 2bov_A RAla, RAS-related prote 86.1 0.27 9.2E-06 48.0 2.0 19 458-476 17-35 (206)
456 2g6b_A RAS-related protein RAB 86.0 0.28 9.6E-06 46.6 2.0 19 458-476 13-31 (180)
457 3t5g_A GTP-binding protein RHE 85.8 0.28 9.7E-06 46.8 2.0 19 458-476 9-27 (181)
458 3tmk_A Thymidylate kinase; pho 85.8 0.33 1.1E-05 49.6 2.5 24 454-477 4-27 (216)
459 1vg8_A RAS-related protein RAB 85.7 0.29 9.9E-06 47.9 2.0 19 458-476 11-29 (207)
460 3tkl_A RAS-related protein RAB 85.6 0.29 1E-05 47.3 2.0 19 458-476 19-37 (196)
461 1mh1_A RAC1; GTP-binding, GTPa 85.6 0.3 1E-05 46.6 2.0 19 458-476 8-26 (186)
462 1ksh_A ARF-like protein 2; sma 85.5 0.3 1E-05 47.0 2.0 20 457-476 20-39 (186)
463 2gf0_A GTP-binding protein DI- 85.4 0.31 1E-05 47.3 2.0 19 458-476 11-29 (199)
464 2h57_A ADP-ribosylation factor 85.2 0.31 1.1E-05 47.2 1.9 20 458-477 24-43 (190)
465 2fg5_A RAB-22B, RAS-related pr 85.1 0.32 1.1E-05 47.4 2.0 19 458-476 26-44 (192)
466 2o52_A RAS-related protein RAB 85.0 0.32 1.1E-05 47.8 2.0 19 458-476 28-46 (200)
467 2gf9_A RAS-related protein RAB 84.9 0.33 1.1E-05 46.9 2.0 19 458-476 25-43 (189)
468 2ew1_A RAS-related protein RAB 84.8 0.34 1.1E-05 48.2 2.0 19 458-476 29-47 (201)
469 3dz8_A RAS-related protein RAB 84.6 0.35 1.2E-05 47.0 2.0 20 458-477 26-45 (191)
470 2il1_A RAB12; G-protein, GDP, 84.6 0.35 1.2E-05 47.2 2.0 20 458-477 29-48 (192)
471 2a5j_A RAS-related protein RAB 84.5 0.35 1.2E-05 46.9 2.0 19 458-476 24-42 (191)
472 1zj6_A ADP-ribosylation factor 84.5 0.35 1.2E-05 46.7 2.0 20 457-476 18-37 (187)
473 3bwd_D RAC-like GTP-binding pr 84.5 0.36 1.2E-05 46.0 2.0 19 458-476 11-29 (182)
474 2fu5_C RAS-related protein RAB 84.5 0.31 1.1E-05 46.6 1.6 19 458-476 11-29 (183)
475 3a8t_A Adenylate isopentenyltr 84.4 0.44 1.5E-05 52.1 2.8 23 454-476 39-61 (339)
476 3hjn_A DTMP kinase, thymidylat 84.4 1.8 6.3E-05 43.1 7.2 20 457-476 2-21 (197)
477 2r62_A Cell division protease 84.3 0.19 6.4E-06 52.0 -0.1 20 458-477 47-66 (268)
478 1x3s_A RAS-related protein RAB 84.2 0.37 1.3E-05 46.4 2.0 19 458-476 18-36 (195)
479 2bcg_Y Protein YP2, GTP-bindin 84.1 0.37 1.3E-05 47.3 2.0 19 458-476 11-29 (206)
480 1zbd_A Rabphilin-3A; G protein 84.1 0.38 1.3E-05 47.0 2.0 19 458-476 11-29 (203)
481 3oes_A GTPase rhebl1; small GT 84.1 0.37 1.3E-05 47.2 2.0 20 458-477 27-46 (201)
482 4dcu_A GTP-binding protein ENG 84.1 0.48 1.6E-05 53.5 3.1 21 456-476 24-44 (456)
483 1z06_A RAS-related protein RAB 84.1 0.38 1.3E-05 46.5 2.0 19 458-476 23-41 (189)
484 2hf9_A Probable hydrogenase ni 84.1 0.41 1.4E-05 47.8 2.3 22 456-477 39-60 (226)
485 4bas_A ADP-ribosylation factor 84.1 0.39 1.3E-05 46.5 2.0 20 457-476 19-38 (199)
486 3reg_A RHO-like small GTPase; 84.0 0.38 1.3E-05 46.7 2.0 20 458-477 26-45 (194)
487 2dby_A GTP-binding protein; GD 84.0 0.38 1.3E-05 53.2 2.2 21 458-478 4-24 (368)
488 1zd9_A ADP-ribosylation factor 83.9 0.39 1.3E-05 46.6 2.0 19 458-476 25-43 (188)
489 2atv_A RERG, RAS-like estrogen 83.9 0.39 1.3E-05 46.8 2.0 20 458-477 31-50 (196)
490 2h17_A ADP-ribosylation factor 83.9 0.37 1.2E-05 46.4 1.7 20 458-477 24-43 (181)
491 2b6h_A ADP-ribosylation factor 83.8 0.4 1.4E-05 46.9 2.0 19 458-476 32-50 (192)
492 4hlc_A DTMP kinase, thymidylat 83.7 0.47 1.6E-05 47.9 2.6 23 455-477 2-24 (205)
493 2p5s_A RAS and EF-hand domain 83.7 0.4 1.4E-05 46.9 2.0 19 458-476 31-49 (199)
494 3eph_A TRNA isopentenyltransfe 83.5 0.47 1.6E-05 53.1 2.6 21 456-476 3-23 (409)
495 3sr0_A Adenylate kinase; phosp 83.5 0.45 1.5E-05 48.1 2.3 20 457-476 2-21 (206)
496 2cjw_A GTP-binding protein GEM 83.5 0.42 1.4E-05 46.9 2.0 19 458-476 9-27 (192)
497 2fv8_A H6, RHO-related GTP-bin 83.5 0.34 1.2E-05 47.9 1.3 34 444-477 13-47 (207)
498 1gwn_A RHO-related GTP-binding 83.4 0.41 1.4E-05 47.6 2.0 20 458-477 31-50 (205)
499 2q3h_A RAS homolog gene family 83.4 0.42 1.4E-05 46.6 2.0 20 458-477 23-42 (201)
500 2eqj_A Metal-response element- 83.4 4 0.00014 33.9 7.4 47 797-843 13-63 (66)
No 1
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=5.8e-68 Score=641.20 Aligned_cols=507 Identities=20% Similarity=0.209 Sum_probs=435.8
Q ss_pred hhhhhhhHhhhhhcChHHH--------HHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 003142 44 DKKSRVVYESLRVLEWDKL--------CHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKHGSCSLD 115 (844)
Q Consensus 44 ~~~~~m~~~~l~~Le~~~i--------~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~~~~~~~~ 115 (844)
..-+.|+..|++.|||.+. +-.+..+|.|++|+++++.|+..|..+.++++++++.|.++..+... ...+
T Consensus 264 ~~~m~ld~~t~~~LEl~~~~~~~~~gSL~~ll~~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~~~~~--l~~~ 341 (800)
T 1wb9_A 264 QDSIIMDAATRRNLEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAG--LQPV 341 (800)
T ss_dssp GGBCEECHHHHHHTTSSSCTTSCSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGGGHHH--HHHH
T ss_pred CCEEEecHHHHHhccCcccCCCCccccHHHHhCCCcCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3345699999999999998 78999999999999999996445578999999999999998772211 1233
Q ss_pred CCCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHcc
Q 003142 116 LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQ 195 (844)
Q Consensus 116 ~~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~i~~ 195 (844)
+.++. |+++.+.|+..| .+++.||..++.+|..+..++.++... ..|.|..+...+..+..+.+.|.+
T Consensus 342 L~~~~--Dler~l~r~~~~-~~~~~dl~~l~~~l~~~~~l~~~l~~~---------~~~~L~~l~~~l~~~~~l~~~i~~ 409 (800)
T 1wb9_A 342 LRQVG--DLERILARLALR-TARPRDLARMRHAFQQLPELRAQLETV---------DSAPVQALREKMGEFAELRDLLER 409 (800)
T ss_dssp HHTTC--SHHHHHHHHHHT-CCCHHHHHHHHHHHTTHHHHHHHHHSC---------CCHHHHHHHHHHCCCHHHHHHHHH
T ss_pred hcCCc--cHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHhc---------CcHHHHHHHHhcccHHHHHHHHHH
Confidence 66676 588999999887 899999999999999999988665321 235677888888999999999999
Q ss_pred ccCcC--------CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccEEeeCCE---EEEEecCCcc-cc
Q 003142 196 VVDED--------GSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGR---LCIRTGADQL-SF 263 (844)
Q Consensus 196 ~id~~--------G~v~D~AS~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~r~gr---~vi~v~~~~~-~~ 263 (844)
+||++ |.|+|++||+|+.||+.++..++.+.+..++.... .....++++.+| |+|+|+.+++ ++
T Consensus 410 ~i~~~~~~~~~~~~~I~~g~~~eLd~lr~~~~~~~~~l~~~~~~~~~~----~~~~~l~i~~~~~~gy~i~V~~~~~~~v 485 (800)
T 1wb9_A 410 AIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERER----TGLDTLKVGFNAVHGYYIQISRGQSHLA 485 (800)
T ss_dssp HBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCTTCEEEEETTTEEEEEEEHHHHTTS
T ss_pred HhCcCchhhhhcCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCceEEEecCcceEEEEEeccccccC
Confidence 99987 89999999999999999999888777766554322 222345566665 9999999998 88
Q ss_pred c-cEEee-cccCCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003142 264 K-GLLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341 (844)
Q Consensus 264 ~-giv~~-S~sG~t~~iEP~~~v~lnn~l~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a~~a~~ 341 (844)
| |++|. |.+|+++|++|. ++++|+++.+++.++..++.+|+.+|+..+..+.+.|..+.+.+++||+++|+|.+|.+
T Consensus 486 p~~~i~~~s~~~~~~f~tp~-l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~ 564 (800)
T 1wb9_A 486 PINYMRRQTLKNAERYIIPE-LKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYT 564 (800)
T ss_dssp CTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeeeccCCCEEeCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 89997 999999999995 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeCCcccccccCCCCcccccCCccccceEEecCCcchHHHHHhHHhhHHHHHhhHHhHHHHHHhhhcCCCccc
Q 003142 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAAR 421 (844)
Q Consensus 342 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~rHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (844)
++||+|.|+. +..+.++++|||++...
T Consensus 565 ~~~~~P~~~~----------------------~~~i~i~~~rHP~le~~------------------------------- 591 (800)
T 1wb9_A 565 LNYTCPTFID----------------------KPGIRITEGRHPVVEQV------------------------------- 591 (800)
T ss_dssp TTCBCCEECS----------------------SSCEEEEEECCTTHHHH-------------------------------
T ss_pred CCCcccEECC----------------------CCCEEEEeccccEEEcc-------------------------------
Confidence 9999999973 34699999999999531
Q ss_pred CCCccCCCCCchhhhhhccCCccceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHH
Q 003142 422 KGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS 501 (844)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~ 501 (844)
.++++|++|++|+.+|++++|+||||||||||||+|+++.+++|.|.++|+ ....++++++
T Consensus 592 ------------------~~~~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa-~~~~i~~~~~ 652 (800)
T 1wb9_A 592 ------------------LNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPA-QKVEIGPIDR 652 (800)
T ss_dssp ------------------CSSCCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCCE
T ss_pred ------------------CCCceeeecccccCCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccch-hcccceeHHH
Confidence 135789999999977899999999999999999999999999999999998 5677888889
Q ss_pred HhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEccchh
Q 003142 502 VFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGE 580 (844)
Q Consensus 502 i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~-g~t~vIitTHd~e 580 (844)
++..++..+++..++++|+.+|+++..++..+.+|+||||||||+|||+.++.++++++++.+.+. |++ +|++|||.+
T Consensus 653 i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~-vl~~TH~~e 731 (800)
T 1wb9_A 653 IFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKAL-TLFATHYFE 731 (800)
T ss_dssp EEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCE-EEEECSCGG
T ss_pred HHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCe-EEEEeCCHH
Confidence 999999999999999999999999999999999999999999999999999999888999999884 886 999999999
Q ss_pred HHhhhccccceeeeEEEEecc--cceeeEEeecCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Q 003142 581 LKTLKYSNDFFENACMEFDEV--KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642 (844)
Q Consensus 581 l~~~a~~~~~v~ng~v~fd~~--~l~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~l~~ 642 (844)
+..++++...+.|++|.++.. .+.|+|++..|.+++|||++||+++|+|++|+++|++++..
T Consensus 732 l~~l~d~~~~v~n~~~~~~~~~~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~ 795 (800)
T 1wb9_A 732 LTQLPEKMEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRE 795 (800)
T ss_dssp GGGHHHHSTTEEEEEEEEEEETTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhceEEEEEEEEEcCCcEEEEEEEEECCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999999864 48999999999999999999999999999999999988753
No 2
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=2.9e-61 Score=579.83 Aligned_cols=491 Identities=23% Similarity=0.265 Sum_probs=419.2
Q ss_pred hhhhhhhHhhhhhcChHH------HHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHH--HHcCCCCCC
Q 003142 44 DKKSRVVYESLRVLEWDK------LCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM--QKHGSCSLD 115 (844)
Q Consensus 44 ~~~~~m~~~~l~~Le~~~------i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~--~~~~~~~~~ 115 (844)
..-+.|+..|++.||+.+ .+-.+..+|.|++|+++++.|+..|..+.++++++++.+.++... +... ....
T Consensus 247 ~~~m~lD~~t~~~LEl~~~~~~~gsL~~~ld~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~-l~~~ 325 (765)
T 1ewq_A 247 GAFMRLPEATLRALEVFEPLRGQDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREG-VRRL 325 (765)
T ss_dssp GGSCBCCHHHHHHTTSSSCSSSCCCHHHHHCCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHH-HHHH
T ss_pred CCeEEecHHHHHhCcCccCCCccchHHHHhCCCCCHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHhCHHHHHH-HHHH
Confidence 334569999999999997 778888999999999999997555578999999999999999873 1111 1233
Q ss_pred CCCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHHHHHcc
Q 003142 116 LTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLIKSIMQ 195 (844)
Q Consensus 116 ~~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~~~i~~ 195 (844)
+.++. |+++.+.|+..| .+++.|+..+..+|..+..++.++. +...+..++.+.+.|.+
T Consensus 326 L~~~~--Dler~l~r~~~~-~~~~~dl~~l~~~l~~~~~l~~~l~------------------l~~~l~~~~~l~~~i~~ 384 (765)
T 1ewq_A 326 LYRLA--DLERLATRLELG-RASPKDLGALRRSLQILPELRALLG------------------EEVGLPDLSPLKEELEA 384 (765)
T ss_dssp HTTCC--CHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHC------------------TTSCCCCCHHHHHHHHH
T ss_pred HhcCC--CHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHH------------------HHhccccHHHHHHHHHH
Confidence 67776 588899998776 7999999999999999988775442 11233455667777777
Q ss_pred ccCcC--------CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccEEeeCCE---EEEEecCCcc-cc
Q 003142 196 VVDED--------GSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGR---LCIRTGADQL-SF 263 (844)
Q Consensus 196 ~id~~--------G~v~D~AS~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~r~gr---~vi~v~~~~~-~~ 263 (844)
+|+++ |.|+|++|++|+.+|+.++..++.+.+..+++..... ...++++.++ |+|+|+..++ ++
T Consensus 385 ~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~----~~~l~i~~~~~~gy~i~v~~~~~~~v 460 (765)
T 1ewq_A 385 ALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERTG----IPTLKVGYNAVFGYYLEVTRPYYERV 460 (765)
T ss_dssp HBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CTTCEEEEETTTEEEEEEEGGGGGGS
T ss_pred HhcccchhhhccCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCceEEEeccceeEEEEeehHhhhcC
Confidence 77765 7899999999999999999988888877777654432 2234555555 9999999999 88
Q ss_pred cc-EEee-cccCCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003142 264 KG-LLLS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATYSLS 341 (844)
Q Consensus 264 ~g-iv~~-S~sG~t~~iEP~~~v~lnn~l~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a~~a~~ 341 (844)
|| ++|. |.+|+++|++|. ++++|+++.+++.++..++.+|+.+|+..+..+.+.|..+.+.+++||+++|+|.+|..
T Consensus 461 p~~~i~~~s~~~~~rf~tp~-l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~la~LD~l~s~a~~a~~ 539 (765)
T 1ewq_A 461 PKEYRPVQTLKDRQRYTLPE-MKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVR 539 (765)
T ss_dssp CTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEeccCCcEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 88 7887 999999999995 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeCCcccccccCCCCcccccCCccccceEEecCCcchHHHHHhHHhhHHHHHhhHHhHHHHHHhhhcCCCccc
Q 003142 342 FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGNAAR 421 (844)
Q Consensus 342 ~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~rHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (844)
+++|+|.+. ..|.++++|||++..
T Consensus 540 ~~~~~P~~~------------------------~~i~i~~~rHP~le~-------------------------------- 563 (765)
T 1ewq_A 540 YGYVRPRFG------------------------DRLQIRAGRHPVVER-------------------------------- 563 (765)
T ss_dssp HTCBCCEES------------------------SSEEEEEECCTTGGG--------------------------------
T ss_pred CCceeeccC------------------------CcEEEEEeECceEcc--------------------------------
Confidence 999999992 149999999999841
Q ss_pred CCCccCCCCCchhhhhhccCCccceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHH
Q 003142 422 KGEKDTNLSPSEMQVSALELAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS 501 (844)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~ 501 (844)
++.+|++|++|+ |++++|+||||||||||||+|+++.++++.|.++|+ ....++++++
T Consensus 564 -------------------~~~~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~ 621 (765)
T 1ewq_A 564 -------------------RTEFVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDG 621 (765)
T ss_dssp -------------------TSCCCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSE
T ss_pred -------------------CCceEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHH
Confidence 246899999999 899999999999999999999999999999999998 6677888889
Q ss_pred HhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhH
Q 003142 502 VFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581 (844)
Q Consensus 502 i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el 581 (844)
++..+++.+++..++|+|..++..+..++..+.+|+||||||||+||++.++.++.+++++.+.+.|++ +|++|||.++
T Consensus 622 i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~-vl~~TH~~~l 700 (765)
T 1ewq_A 622 IYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAY-TLFATHYFEL 700 (765)
T ss_dssp EEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE-EEEECCCHHH
T ss_pred hhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCE-EEEEeCCHHH
Confidence 999999999999999999999999999888899999999999999999999888877889998888887 9999999999
Q ss_pred HhhhccccceeeeEEEEecc--cceeeEEeecCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Q 003142 582 KTLKYSNDFFENACMEFDEV--KLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642 (844)
Q Consensus 582 ~~~a~~~~~v~ng~v~fd~~--~l~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~l~~ 642 (844)
..++ ...+.|++|.++.. .+.|+|++..|.+++|||+++|+++|+|++|+++|+.++..
T Consensus 701 ~~~~--~~~v~n~~~~~~~~~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~ 761 (765)
T 1ewq_A 701 TALG--LPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQA 761 (765)
T ss_dssp HTCC--CTTEEEEEEEEECCSSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhh--hhcceEEEEEEEEcCCeEEEEEEEEECCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9888 78899999999875 48899999999999999999999999999999999998753
No 3
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=5.4e-59 Score=567.69 Aligned_cols=511 Identities=23% Similarity=0.263 Sum_probs=400.9
Q ss_pred hhhhhHhhhhhcChH----------HHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHH----HHHcCC
Q 003142 46 KSRVVYESLRVLEWD----------KLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIE----MQKHGS 111 (844)
Q Consensus 46 ~~~m~~~~l~~Le~~----------~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~----~~~~~~ 111 (844)
-+.|+..|++-||.- -++ .+-.+|.|++|+++++.|+..|..+.+.++.+|+.+.++.. +...
T Consensus 318 ~m~LD~~T~rnLEL~~~~~~~~~~gSLl-~~Ld~t~T~mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~-- 394 (918)
T 3thx_B 318 FMTINGTTLRNLEILQNQTDMKTKGSLL-WVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQ-- 394 (918)
T ss_dssp BCEECHHHHHHTTSSSCTTTCSSTTSHH-HHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCCTHHHH--
T ss_pred EEEECHHHHHhcCCcccCCCCCCCCcHH-HHHhhCCChHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCCcHHHHH--
Confidence 456889999888852 244 44589999999999999865557899999999999987651 1110
Q ss_pred CCCCCCCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhcccccHHHHHHhcccchHHH
Q 003142 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSE-TLQLSLRAAIKEDADLYIRFMPLTQMIMQLFVNRSLI 190 (844)
Q Consensus 112 ~~~~~~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~-~lk~~l~~~~~~~~~~~~~~~~L~~l~~~l~~~~~l~ 190 (844)
..-.+.++. |+++.+.|+.-| ..++.|+..+...|..+. .++..+...... ..-+.|..++..+..+....
T Consensus 395 l~~~L~~i~--DleRll~ri~~~-~~~~~dl~~l~~~l~~l~~~l~~~l~~~~~~-----~~~~lL~~~~~~~~~~~~~~ 466 (918)
T 3thx_B 395 IENHLRKLP--DIERGLCSIYHK-KCSTQEFFLIVKTLYHLKSEFQAIIPAVNSH-----IQSDLLRTVILEIPELLSPV 466 (918)
T ss_dssp HHHTTTTCC--CHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCHHHHHHHTHHHHHTGGG
T ss_pred HHHHHccCc--cHHHHHHHhccC-cCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----ccCHHHHHHHHhhhhhHHHH
Confidence 011256665 578888888655 578999999999888665 443332211000 01122333333322111112
Q ss_pred HHHccccCc-------CCc-cCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccEEeeCCEEEEEecCCcc
Q 003142 191 KSIMQVVDE-------DGS-IKD-SASPALKQSRGQVQMLERKLYQLMDMLIRNENNESLFLEVSSIHGRLCIRTGADQL 261 (844)
Q Consensus 191 ~~i~~~id~-------~G~-v~D-~AS~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~r~gr~vi~v~~~~~ 261 (844)
..+...|++ .|. +.+ ...|+|+.+|++++.++.++++.++++...... .....++.+++||+|+|+.+++
T Consensus 467 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~i~~-~~~~~~~~~g~~y~iev~~~~~ 545 (918)
T 3thx_B 467 EHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILKN-PSAQYVTVSGQEFMIEIKNSAV 545 (918)
T ss_dssp HHHHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TTCCCEEETTEEEEEEEETTSG
T ss_pred HHHHHHHHHhhhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-ccceeEeecCCEEEEEEcHHHH
Confidence 222233332 122 222 246999999999999999999999876433221 2345688999999999999999
Q ss_pred -ccccEEee-cccCCe-EEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 003142 262 -SFKGLLLS-SSSGIG-SVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARATY 338 (844)
Q Consensus 262 -~~~giv~~-S~sG~t-~~iEP~~~v~lnn~l~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a~~ 338 (844)
++||.+|. |++|++ .|++| +++++|+++.+++.+....+++++.++...+..+.+.|..+.+.+++||+++|+|.+
T Consensus 546 ~~vp~~~~~~~~~~~~~rf~tp-el~~~~~~~~~~~e~~~~~e~~~~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~ 624 (918)
T 3thx_B 546 SCIPTDWVKVGSTKAVSRFHSP-FIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKV 624 (918)
T ss_dssp GGSCSSCEEEEECSSEEEEECH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCCeEEEEEecCCeeEEECH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 999998 57777 799999999999998888889999999999999999999999999999999999999
Q ss_pred HHhcCCCCceeeCCcccccccCCCCcccccCCccccceEEecCCcchHHHHHhHHhhHHHHHhhHHhHHHHHHhhhcCCC
Q 003142 339 SLSFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKLYGGN 418 (844)
Q Consensus 339 a~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~rHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (844)
|..++||+|.|++ +..|.++++|||++.....
T Consensus 625 a~~~~~~~P~~~~----------------------~~~i~i~~~rHP~le~~~~-------------------------- 656 (918)
T 3thx_B 625 AKQGDYCRPTVQE----------------------ERKIVIKNGRHPVIDVLLG-------------------------- 656 (918)
T ss_dssp HTSSSCBCCEEES----------------------SCEEEEEEECCHHHHHHTC--------------------------
T ss_pred HhcCCCcCCcccC----------------------CCcEEEEeccchhhhhhhc--------------------------
Confidence 9999999999983 3469999999999963210
Q ss_pred cccCCCccCCCCCchhhhhhccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccc
Q 003142 419 AARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVP 497 (844)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~ 497 (844)
.++++|+++++|+ .+|++++|+||||||||||||+|+++.+++|.|.++|+ ....++
T Consensus 657 ---------------------~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa-~~~~i~ 714 (918)
T 3thx_B 657 ---------------------EQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPA-EEATIG 714 (918)
T ss_dssp ---------------------SCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSS-SEEEEE
T ss_pred ---------------------cCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccc-hhhhhh
Confidence 1357899999999 78999999999999999999999999999999999998 667788
Q ss_pred hhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEc
Q 003142 498 WFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATT 576 (844)
Q Consensus 498 ~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitT 576 (844)
+++.++..+|..+++..++|+|+++|+++..++..+.+|+||||||||+||||.++.++++++++.+.+ .|++ +|++|
T Consensus 715 ~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~t-vl~vT 793 (918)
T 3thx_B 715 IVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL-TLFVT 793 (918)
T ss_dssp CCSEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCE-EEEEC
T ss_pred HHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCe-EEEEe
Confidence 889999999999999999999999999999999999999999999999999999999999899999865 5887 99999
Q ss_pred cchhHHhhhccccc-eeeeEEEEe----------------cccceeeEEeecCCCCCchHHHHHHHcCCCHHHHHHHHHH
Q 003142 577 HHGELKTLKYSNDF-FENACMEFD----------------EVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQL 639 (844)
Q Consensus 577 Hd~el~~~a~~~~~-v~ng~v~fd----------------~~~l~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~ 639 (844)
||+++..++++... +.|++|.|. .+++.|+|++..|.+++|||+++|+++|+|++|+++|+.+
T Consensus 794 H~~el~~l~~~~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~vi~rA~~~ 873 (918)
T 3thx_B 794 HYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHK 873 (918)
T ss_dssp SCGGGGGHHHHTTTTEEEEEEEEECC-----------------CCEEEEEEESCCCTTTTHHHHTTTTCCHHHHHHHHHH
T ss_pred CcHHHHHHHhhcccceEEEEEEEEEcccccccccccccCCCCceeEeeeeccCCCCCcHHHHHHHHhCcCHHHHHHHHHH
Confidence 99999999998875 999999983 2468999999999999999999999999999999999986
Q ss_pred H
Q 003142 640 Y 640 (844)
Q Consensus 640 l 640 (844)
+
T Consensus 874 ~ 874 (918)
T 3thx_B 874 S 874 (918)
T ss_dssp H
T ss_pred H
Confidence 5
No 4
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=1.3e-56 Score=548.28 Aligned_cols=517 Identities=20% Similarity=0.225 Sum_probs=403.7
Q ss_pred hhhhhHhhhhhcChH-----------HHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHH---HHcCC
Q 003142 46 KSRVVYESLRVLEWD-----------KLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEM---QKHGS 111 (844)
Q Consensus 46 ~~~m~~~~l~~Le~~-----------~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~---~~~~~ 111 (844)
-+.|+..|++.||.- -+...| .+|.|++|+++++.|+..|..+.+.++++|+-+.++..- ...-.
T Consensus 299 ~m~lD~~t~~nLEl~~~~~~~~~~~~SL~~~l-d~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~ 377 (934)
T 3thx_A 299 YMKLDIAAVRALNLFQGSVEDTTGSQSLAALL-NKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQ 377 (934)
T ss_dssp BCEECHHHHHHTTSCC---------CCHHHHH-CCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred eEEeCHHHHhhccccccCCCCCCCCCcHHHHh-ccCCCHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 356889999888852 233333 789999999999998555578999999999999988641 11000
Q ss_pred CCCCCCCCCchhHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--cccHHHHHHhcccchHH
Q 003142 112 CSLDLTGVDLSLVKSAIREVRRASPLRPNEALAVVALLQFSETLQLSLRAAIKEDADLYIR--FMPLTQMIMQLFVNRSL 189 (844)
Q Consensus 112 ~~~~~~~i~~~~v~~~l~ra~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~~~~~~~~--~~~L~~l~~~l~~~~~l 189 (844)
...+.++. |+.+.+.|+..| ..++.|+..++.+|..+..++..+..+-......... +.+|.+ .+..+..+
T Consensus 378 -~~~L~~i~--DleRl~~ri~~~-~~~~~dl~~l~~~l~~~~~l~~~l~~~~~~~~~~l~~~~~~~l~~---~~~~l~~~ 450 (934)
T 3thx_A 378 -EDLLRRFP--DLNRLAKKFQRQ-AANLQDCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTD---LRSDFSKF 450 (934)
T ss_dssp -TTTGGGCC--CHHHHHHHHHTT-CCCHHHHHHHHHHHTTHHHHHHHHHHTCCSSSTTGGGGTHHHHHH---HHHHHHHH
T ss_pred -HHHhcCCC--CHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH---HHhhHHHH
Confidence 01256665 588889988766 3589999999999998888876664321000000000 122333 33445677
Q ss_pred HHHHccccCcC------CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cccc--cEEeeCCEEEEEecCC
Q 003142 190 IKSIMQVVDED------GSIKDSASPALKQSRGQVQMLERKLYQLMDMLIRNENNE--SLFL--EVSSIHGRLCIRTGAD 259 (844)
Q Consensus 190 ~~~i~~~id~~------G~v~D~AS~~L~~iR~~~~~~~~~~~~~l~~~~~~~~~~--~~~~--~~t~r~gr~vi~v~~~ 259 (844)
.+.|..+||++ |.|++++|++|+.+|+.+..+++.+.+.++++....... ..+. .....+.++.|+++.+
T Consensus 451 ~~~i~~~i~~~~~~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~lk~~~~~~~Gy~i~v~~~~~ 530 (934)
T 3thx_A 451 QEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEE 530 (934)
T ss_dssp HHHHHTTBCTTGGGTTCCCBCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCBTTTBEEEECC--CEEEEECHHHH
T ss_pred HHHHHHHhCcchhhcCCceeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEEeccceEEEEEEechh
Confidence 78888888765 479999999999999999999999988888876554311 1111 2223333334554332
Q ss_pred cc---ccccEEeecccCCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 003142 260 QL---SFKGLLLSSSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQVDLDEIEKMLNGIIQLDVVNARA 336 (844)
Q Consensus 260 ~~---~~~giv~~S~sG~t~~iEP~~~v~lnn~l~~~~~~~~~e~~~il~~L~~~v~~~~~~l~~~~~~l~~lD~~~a~a 336 (844)
.. +..++.+++.++...| .|.++.++|+++.+++.++.+++++|+.+|...+..+.+.|..+.+++++||+++|+|
T Consensus 531 ~~~~~~~~~~~~~t~~~~~rf-~t~el~~l~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A 609 (934)
T 3thx_A 531 KVLRNNKNFSTVDIQKNGVKF-TNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFA 609 (934)
T ss_dssp TTTTTCSSCEEEEEC--CEEE-ECTTHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCcEEEEcccCeEEE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2346666644444455 5559999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCCCceeeCCcccccccCCCCcccccCCccccceEEecCCcchHHHHHhHHhhHHHHHhhHHhHHHHHHhhh
Q 003142 337 TYSLS--FGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQHKQKTQQAWKDLESANTELRRRKL 414 (844)
Q Consensus 337 ~~a~~--~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~rHPlL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (844)
.+|.. ++||+|.++.. ++..|.++++|||++...
T Consensus 610 ~~a~~~~~~~~rP~~~~~--------------------~~~~i~i~~~rHP~le~~------------------------ 645 (934)
T 3thx_A 610 HVSNGAPVPYVRPAILEK--------------------GQGRIILKASRHACVEVQ------------------------ 645 (934)
T ss_dssp HHHHTSSSCCBCCEEECT--------------------TSCEEEEEEECCTTTTTC------------------------
T ss_pred HHHHhccCCCcCCeeccC--------------------CCcceEeecCccchhhhc------------------------
Confidence 99997 88999999731 134699999999998421
Q ss_pred cCCCcccCCCccCCCCCchhhhhhccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccc
Q 003142 415 YGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY 493 (844)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~ 493 (844)
.++++|++|++|+ ..|++++|+||||||||||||+|+++.+|+|.|+++|+ ..
T Consensus 646 -------------------------~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa-~~ 699 (934)
T 3thx_A 646 -------------------------DEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC-ES 699 (934)
T ss_dssp ---------------------------CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE-EE
T ss_pred -------------------------CCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc-cc
Confidence 1357899999999 67899999999999999999999999999999999998 67
Q ss_pred cccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEE
Q 003142 494 AKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLT 572 (844)
Q Consensus 494 ~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~-~g~t~v 572 (844)
..++.++.++..+|..+++..++|+|+++|+++..++..+++|+||||||||+||||.++.++++++++++.+ .|++ +
T Consensus 700 ~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~-v 778 (934)
T 3thx_A 700 AEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAF-C 778 (934)
T ss_dssp EEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCE-E
T ss_pred ccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCE-E
Confidence 7788899999999999999999999999999999999889999999999999999999999999999999986 4886 9
Q ss_pred EEEccchhHHhhhccccceeeeEEEE--ecccceeeEEeecCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Q 003142 573 IATTHHGELKTLKYSNDFFENACMEF--DEVKLKPTYKILWGVPGRSSAINIAERLGLPGIVVQNARQLYGA 642 (844)
Q Consensus 573 IitTHd~el~~~a~~~~~v~ng~v~f--d~~~l~p~y~l~~G~~g~S~a~~iA~~~gl~~~ii~~A~~~l~~ 642 (844)
|++|||+++..+++++..+.||+|.+ +.+.+.++|++..|.++.|||+.+|+.+|+|++|+++|+.++..
T Consensus 779 l~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~ 850 (934)
T 3thx_A 779 MFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALE 850 (934)
T ss_dssp EEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred EEEcCcHHHHHHhcccceeEeeEEEEEecCCcEEEEEEEeeCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999986 45678999999999999999999999999999999999988754
No 5
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=2.3e-55 Score=542.85 Aligned_cols=518 Identities=20% Similarity=0.216 Sum_probs=388.2
Q ss_pred hhhhhHhhhhhcChH----------HHHHHHHhhcCCHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHc-CCCCC
Q 003142 46 KSRVVYESLRVLEWD----------KLCHSVSSFARTSLGREATLTQLWSINQTYQDSLRLLDETNAAIEMQKH-GSCSL 114 (844)
Q Consensus 46 ~~~m~~~~l~~Le~~----------~i~~~l~~~~~t~~Gk~~~~~l~p~~~~~~~~~~~~l~et~ea~~~~~~-~~~~~ 114 (844)
-+.|+..|++-||.- -++..| .+|.|++|+++++.|+..|..+.+.|+++|+-+.+++.-... ....-
T Consensus 394 ~m~LD~~T~~nLEl~~~~~~g~~~gSLl~~L-d~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~~~~~~~~l~~ 472 (1022)
T 2o8b_B 394 RMVLDAVTLNNLEIFLNGTNGSTEGTLLERV-DTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVE 472 (1022)
T ss_dssp BCBCCHHHHHHTTCSSCCSSSSCCCSHHHHH-CCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred eEEeCHHHHHhhcCCccCCCCCCCCcHHHHh-CcCCCchhHHHHHHHHhCccCCHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 355889898888853 355555 899999999999998766689999999999999887642100 00000
Q ss_pred CCCCCCchhHHHHHHhccc-CCC------------------CCHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhhcc
Q 003142 115 DLTGVDLSLVKSAIREVRR-ASP------------------LRPNEALAVVALL---QFSETLQLSLRAAIKEDADLYIR 172 (844)
Q Consensus 115 ~~~~i~~~~v~~~l~ra~~-g~~------------------L~~~EL~~i~~~L---~~~~~lk~~l~~~~~~~~~~~~~ 172 (844)
-+.++. |+++.+.|+.. |.. .++.++.++..++ ..+..+...+....... .
T Consensus 473 ~L~~i~--DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~~~-----~ 545 (1022)
T 2o8b_B 473 LLKKLP--DLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGF-----K 545 (1022)
T ss_dssp HHTTCC--CHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----C
T ss_pred HHhcCc--cHHHHHHHHHhcCCcccccccchhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccc-----C
Confidence 145555 47788888765 331 2355566666554 33344433332111000 0
Q ss_pred cccHHHHHH--------hcccchHHHHHHccccCc-----CCcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003142 173 FMPLTQMIM--------QLFVNRSLIKSIMQVVDE-----DGSI--KDSASPALKQSRGQVQMLERKLYQLMDMLIRNEN 237 (844)
Q Consensus 173 ~~~L~~l~~--------~l~~~~~l~~~i~~~id~-----~G~v--~D~AS~~L~~iR~~~~~~~~~~~~~l~~~~~~~~ 237 (844)
-+.|..+.. .+..+.++.+.|..+||+ +|.+ +++.||+|+.+|+.++..++.+.+.++++.....
T Consensus 546 s~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~~~~~ 625 (1022)
T 2o8b_B 546 SKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIG 625 (1022)
T ss_dssp CHHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHHHHSCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSGGGSS
T ss_pred cHHHHHHHHhhccccccchHHHHHHHHHHHHHhCchhhhcCCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 122344332 234555666677889986 6777 6667999999999999987777766655432211
Q ss_pred cccccccEEeeCCEEEEEecCCcc-c-cccEE-ee-cccCCeEEEecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003142 238 NESLFLEVSSIHGRLCIRTGADQL-S-FKGLL-LS-SSSGIGSVIEPLSAVPLNDELQQARASVTKAEEDVLLALTEKMQ 313 (844)
Q Consensus 238 ~~~~~~~~t~r~gr~vi~v~~~~~-~-~~giv-~~-S~sG~t~~iEP~~~v~lnn~l~~~~~~~~~e~~~il~~L~~~v~ 313 (844)
......++++++||+|+|+.+++ . +||.+ |. |.+|.+.|+.| ++.+++.++..++.++...+..+..++...+.
T Consensus 626 -~~~l~~~~~~~~~y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~-el~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~ 703 (1022)
T 2o8b_B 626 -CRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTK-TIEKKLANLINAEERRDVSLKDCMRRLFYNFD 703 (1022)
T ss_dssp -CSCCEEECCGGGCCEEEECTTTTSSCCCC-CEEEEETTEEEECCTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCceeEEEecCceEEEEEehhhhcccCCCceEEeeeccCccEEech-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11133577889999999999988 6 78865 65 88999999998 67777777777777766677778888888888
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCceeeCCcccccccCCCCcccccCCccccceEEecCCcchHHHHHh
Q 003142 314 VDLDEIEKMLNGIIQLDVVNARATYSL--SFGGTSPNIFLPQDMKRSLTHEPVTSKVSSSEREWTIYLPKAYHPLLLQQH 391 (844)
Q Consensus 314 ~~~~~l~~~~~~l~~lD~~~a~a~~a~--~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~rHPlL~~~~ 391 (844)
.+...|..+.+++++||+++|+|.+|. ..++|+|.++.+.. +...|.+.++|||++....
T Consensus 704 ~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~~P~~~~~~~------------------~~~~l~i~~~rHP~l~~~~ 765 (1022)
T 2o8b_B 704 KNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPED------------------TPPFLELKGSRHPCITKTF 765 (1022)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEECCEECCTTT------------------SCCCEEEEEECCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCccCCccccCCC------------------CCceEEEEeccccEEEEEe
Confidence 999999999999999999999999999 78999999973100 1235999999999985311
Q ss_pred HHhhHHHHHhhHHhHHHHHHhhhcCCCcccCCCccCCCCCchhhhhhccCCccceeEEEEe-cC-------ceEEEEEcc
Q 003142 392 KQKTQQAWKDLESANTELRRRKLYGGNAARKGEKDTNLSPSEMQVSALELAHPVPIDIFIA-RK-------TRVLVITGP 463 (844)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~disl~-~~-------g~iv~ItGP 463 (844)
.++.+|++|++|+ .. |++++|+||
T Consensus 766 ------------------------------------------------~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGp 797 (1022)
T 2o8b_B 766 ------------------------------------------------FGDDFIPNDILIGCEEEEQENGKAYCVLVTGP 797 (1022)
T ss_dssp -------------------------------------------------CCCCCCEEEEESCCCSCC---CCCEEEEECC
T ss_pred ------------------------------------------------cCCceEeeeeeeccccccccCCCCcEEEEECC
Confidence 1356899999998 44 799999999
Q ss_pred CCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEec
Q 003142 464 NTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDE 543 (844)
Q Consensus 464 NGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDE 543 (844)
||||||||||+||++.+++|.|+++|+ ....+++++.++..+|..+++..++++|+++|.++..+++++++|+||||||
T Consensus 798 NgsGKSTlLr~iGl~~~~aqiG~~Vpq-~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 798 NMGGKSTLMRQAGLLAVMAQMGCYVPA-EVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDE 876 (1022)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTTCCEES-SEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CCCChHHHHHHHHHHHHHhheeEEecc-CcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 999999999999988999999999999 5668888999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEEEccchhHHhhhccccceeeeEEEE---------ecccceeeEEeecCC
Q 003142 544 IGAGTNPLEGTALGMSLLEAFAES-GSLLTIATTHHGELKTLKYSNDFFENACMEF---------DEVKLKPTYKILWGV 613 (844)
Q Consensus 544 P~sGlDp~~~~al~~~Ile~L~~~-g~t~vIitTHd~el~~~a~~~~~v~ng~v~f---------d~~~l~p~y~l~~G~ 613 (844)
||+|||+.++.++++++++++.+. |++ +|++|||+++.....+...+.||+|.+ +.+.+.++|++..|.
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~-vl~~TH~~el~~~~~d~~~v~~g~~~~~~~~~~~~~~~~~l~~ly~l~~G~ 955 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCR-TLFSTHYHSLVEDYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGA 955 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCE-EEEECCCHHHHHHTSSCSSEEEEEEEEC-------------CEEEEEESSC
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCE-EEEEeCCHHHHHHhCCcceeecCeEEEEEecCcccCCCCceEEEeeecCCC
Confidence 999999999988889999999876 886 999999999997665666778999984 345788999999999
Q ss_pred CCCchHHHHHHHcCCCHHHHHHHHHHHH
Q 003142 614 PGRSSAINIAERLGLPGIVVQNARQLYG 641 (844)
Q Consensus 614 ~g~S~a~~iA~~~gl~~~ii~~A~~~l~ 641 (844)
+++|||+++|+++|+|++|+++|+.++.
T Consensus 956 ~~~Sygi~vA~l~Glp~~vi~rA~~~~~ 983 (1022)
T 2o8b_B 956 CPKSYGFNAARLANLPEEVIQKGHRKAR 983 (1022)
T ss_dssp CCCCHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998864
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.86 E-value=6e-22 Score=206.12 Aligned_cols=158 Identities=16% Similarity=0.200 Sum_probs=112.6
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh------------------------ccccccccccc--
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA------------------------KSGLHILSSEY-- 493 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~------------------------q~G~~vpa~~~-- 493 (844)
+++.++++++|+ ..|++++|+||||||||||||+|+++.... ..-.++|+...
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (224)
T 2pcj_A 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI 94 (224)
T ss_dssp TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCC
T ss_pred CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccC
Confidence 346789999999 899999999999999999999997542110 00112332110
Q ss_pred cccchhH---------------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 494 AKVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 494 ~~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
..+...+ .++..++..+......+++|++++ ++..+.+++.+|++|||||||+||||.
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 174 (224)
T 2pcj_A 95 PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSA 174 (224)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHH
T ss_pred CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHH
Confidence 0011111 223344444444556677888665 556666789999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
....+. .++..+.+.|.| ||++|||.++..+|+++..+.+|.+.+++
T Consensus 175 ~~~~~~-~~l~~l~~~g~t-vi~vtHd~~~~~~~d~v~~l~~G~i~~~g 221 (224)
T 2pcj_A 175 NTKRVM-DIFLKINEGGTS-IVMVTHERELAELTHRTLEMKDGKVVGEI 221 (224)
T ss_dssp HHHHHH-HHHHHHHHTTCE-EEEECSCHHHHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHH-HHHHHHHHCCCE-EEEEcCCHHHHHhCCEEEEEECCEEEEEe
Confidence 777775 455666666887 99999998887899999999999987654
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.86 E-value=1.4e-21 Score=204.82 Aligned_cols=155 Identities=15% Similarity=0.223 Sum_probs=111.1
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh-------------------------ccccccccccc--c
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------------------------KSGLHILSSEY--A 494 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-------------------------q~G~~vpa~~~--~ 494 (844)
..++++++|+ ..|++++|+||||||||||||+|+++.... ..| ++|+... .
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~-~v~Q~~~l~~ 96 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIG-FVFQQFNLIP 96 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEE-EECTTCCCCT
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEE-EEecCCccCC
Confidence 4689999999 899999999999999999999997542110 111 2332110 0
Q ss_pred ccchhHH------------------------HhhhCCchhhH-hhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCC
Q 003142 495 KVPWFDS------------------------VFADIGDEQSL-SQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGT 548 (844)
Q Consensus 495 ~i~~~~~------------------------i~~~ig~~q~i-~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGl 548 (844)
.+...++ ++..++..+.. ....+++|++++ |+..+.+++.+|++|||||||+||
T Consensus 97 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~L 176 (235)
T 3tif_A 97 LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176 (235)
T ss_dssp TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 1111221 22333443332 445678888665 566667789999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHh-cCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 549 NPLEGTALGMSLLEAFAE-SGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 549 Dp~~~~al~~~Ile~L~~-~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
||.....+.. ++..+.+ .|.| ||++|||.++..+|+++..+.+|.+..+.
T Consensus 177 D~~~~~~i~~-~l~~l~~~~g~t-vi~vtHd~~~~~~~d~i~~l~~G~i~~~~ 227 (235)
T 3tif_A 177 DSKTGEKIMQ-LLKKLNEEDGKT-VVVVTHDINVARFGERIIYLKDGEVEREE 227 (235)
T ss_dssp CHHHHHHHHH-HHHHHHHHHCCE-EEEECSCHHHHTTSSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHH-HHHHHHHHcCCE-EEEEcCCHHHHHhCCEEEEEECCEEEEEc
Confidence 9988887764 5555654 4887 99999999988899999999999997653
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.86 E-value=2.4e-21 Score=207.81 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=113.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh----------------------ccccccccccc---cc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA----------------------KSGLHILSSEY---AK 495 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----------------------q~G~~vpa~~~---~~ 495 (844)
+..++++++|+ ..|++++|+||||||||||||+|+++.... +.-.++|+... ..
T Consensus 20 ~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 20 GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS 99 (275)
T ss_dssp SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCS
T ss_pred CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccccc
Confidence 34599999999 899999999999999999999997543110 00112333110 01
Q ss_pred cchh---------------------HHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 496 VPWF---------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 496 i~~~---------------------~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
..+. ..++..++..+.......++|++++ |+..+.+++.+|++|||||||+||||...
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~ 179 (275)
T 3gfo_A 100 ASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179 (275)
T ss_dssp SBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 1111 1234445555555666778888765 55666678999999999999999999887
Q ss_pred HHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 554 TALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 554 ~al~~~Ile~L~-~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
..+. .++..+. +.|.| ||++|||.++. .+|+++..+.+|.+.++.
T Consensus 180 ~~i~-~~l~~l~~~~g~t-vi~vtHdl~~~~~~~drv~~l~~G~i~~~g 226 (275)
T 3gfo_A 180 SEIM-KLLVEMQKELGIT-IIIATHDIDIVPLYCDNVFVMKEGRVILQG 226 (275)
T ss_dssp HHHH-HHHHHHHHHHCCE-EEEEESCCSSGGGGCSEEEEEETTEEEEEE
T ss_pred HHHH-HHHHHHHhhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 7775 4566666 56887 99999998776 689999999999997654
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.85 E-value=1.6e-21 Score=208.23 Aligned_cols=158 Identities=13% Similarity=0.080 Sum_probs=112.7
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------ccccccccccc--cccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSGLHILSSEY--AKVP 497 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~G~~vpa~~~--~~i~ 497 (844)
+++.++++++|+ ..|++++|+||||||||||||+|+++.... +...+++.... ..+.
T Consensus 22 ~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (266)
T 4g1u_C 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFS 101 (266)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCB
T ss_pred CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCC
Confidence 567899999999 899999999999999999999997643111 00112222110 0111
Q ss_pred h-------------------hHHHhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCC------CCcEEEEecCCCCCCHH
Q 003142 498 W-------------------FDSVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQST------SQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 498 ~-------------------~~~i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~------~p~LLLLDEP~sGlDp~ 551 (844)
+ ...++..++..+......+++|+++++ +..+.+++. +|++|||||||+||||.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~ 181 (266)
T 4g1u_C 102 VSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY 181 (266)
T ss_dssp HHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred HHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHH
Confidence 1 122344455555555667788987755 555556677 99999999999999998
Q ss_pred HHHHHHHHHHHHHHhc-CCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 552 EGTALGMSLLEAFAES-GSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~-g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
....+. .++..+.+. +.| ||++|||.++. .+|+++..+.+|.+.++.
T Consensus 182 ~~~~i~-~~l~~l~~~~~~t-vi~vtHdl~~~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 182 HQQHTL-RLLRQLTRQEPLA-VCCVLHDLNLAALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp HHHHHH-HHHHHHHHHSSEE-EEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHH-HHHHHHHHcCCCE-EEEEEcCHHHHHHhCCEEEEEECCEEEEEc
Confidence 888776 456666655 456 99999998876 599999999999998754
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=5.1e-21 Score=203.14 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=112.4
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-------------------cccccccccc--cccch
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------------------SGLHILSSEY--AKVPW 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-------------------~G~~vpa~~~--~~i~~ 498 (844)
+++.++++++|+ ..|++++|+||||||||||||+|+++..... .-.++|+... ..++.
T Consensus 26 ~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 105 (256)
T 1vpl_A 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 105 (256)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBH
T ss_pred CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcH
Confidence 456799999999 8999999999999999999999976531100 0112332110 01111
Q ss_pred h---------------------HHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 499 F---------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 499 ~---------------------~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
. ..++..++..+......+++|++++ ++..+.+++.+|++|||||||+||||.....+
T Consensus 106 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l 185 (256)
T 1vpl_A 106 IEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 185 (256)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHH
Confidence 1 1223344555555566678888765 55666678999999999999999999887777
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 557 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 557 ~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
. .++..+.+.|.| ||++||+.++. .+|+++..+.+|.+.++
T Consensus 186 ~-~~l~~l~~~g~t-iiivtHd~~~~~~~~d~v~~l~~G~i~~~ 227 (256)
T 1vpl_A 186 R-KILKQASQEGLT-ILVSSHNMLEVEFLCDRIALIHNGTIVET 227 (256)
T ss_dssp H-HHHHHHHHTTCE-EEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred H-HHHHHHHhCCCE-EEEEcCCHHHHHHHCCEEEEEECCEEEEe
Confidence 5 455666667887 99999998776 57999999999988754
No 11
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.85 E-value=3.5e-21 Score=204.98 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=113.1
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc---------------------------------ccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK---------------------------------SGL 486 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q---------------------------------~G~ 486 (844)
+++.++++++|+ ..|++++|+||||||||||||+|+++..... .-.
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (262)
T 1b0u_A 17 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 96 (262)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceE
Confidence 456799999999 8999999999999999999999975421100 001
Q ss_pred ccccccc--cccchh----------------------HHHhhhCCchhh-HhhhhhhhhHHhh-HHHHHHHhCCCCcEEE
Q 003142 487 HILSSEY--AKVPWF----------------------DSVFADIGDEQS-LSQSLSTFSGHLK-QIGNIISQSTSQSLVL 540 (844)
Q Consensus 487 ~vpa~~~--~~i~~~----------------------~~i~~~ig~~q~-i~~~lstfS~~~~-rl~~il~~a~~p~LLL 540 (844)
++|.... ..+.+. ..++..++..+. .....+++|++++ |+..+.+++.+|++||
T Consensus 97 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 176 (262)
T 1b0u_A 97 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 176 (262)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2232110 001111 123444555555 5666778888765 5566667899999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 541 LDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 541 LDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
|||||+||||.....+.. ++..+.+.|.| ||++|||.++. .+|+++..+.+|.+..+
T Consensus 177 LDEPts~LD~~~~~~~~~-~l~~l~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (262)
T 1b0u_A 177 FDEPTSALDPELVGEVLR-IMQQLAEEGKT-MVVVTHEMGFARHVSSHVIFLHQGKIEEE 234 (262)
T ss_dssp EESTTTTSCHHHHHHHHH-HHHHHHHTTCC-EEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EeCCCccCCHHHHHHHHH-HHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999987777764 55666666887 99999998776 58999999999998754
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.85 E-value=3.8e-21 Score=213.03 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=115.6
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-----cc-----------------ccccccccc---
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-----------------LHILSSEYA--- 494 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-----~G-----------------~~vpa~~~~--- 494 (844)
++..++++++|+ ..|++++|+||||||||||||+|+++..... .| .++++ ...
T Consensus 15 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ-~~~l~p 93 (359)
T 3fvq_A 15 QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQ-EGVLFP 93 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECT-TCCCCT
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeC-CCcCCC
Confidence 457799999999 8999999999999999999999976532110 00 11221 111
Q ss_pred ccchhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 495 KVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 495 ~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
.+.+.+ .++..++..+.......++|+++ ||+..+.+++.+|++|||||||+|||+..
T Consensus 94 ~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~ 173 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQL 173 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 111111 23334455555556667888866 55666677899999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
...+...+.+.+.+.|.| +|++|||.+.+ .+|+++..+.+|.+....
T Consensus 174 r~~l~~~l~~~~~~~g~t-vi~vTHd~~ea~~~aDri~vl~~G~i~~~g 221 (359)
T 3fvq_A 174 RRQIREDMIAALRANGKS-AVFVSHDREEALQYADRIAVMKQGRILQTA 221 (359)
T ss_dssp HHHHHHHHHHHHHHTTCE-EEEECCCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCE-EEEEeCCHHHHHHHCCEEEEEECCEEEEEe
Confidence 888876676766777887 99999998766 699999999999987543
No 13
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.84 E-value=5.3e-21 Score=203.79 Aligned_cols=157 Identities=15% Similarity=0.208 Sum_probs=111.5
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc----------------------cccccccccc--cc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------------------SGLHILSSEY--AK 495 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q----------------------~G~~vpa~~~--~~ 495 (844)
+++.++++++|+ ..|++++|+||||||||||||+|+++..... .-.++|+... ..
T Consensus 35 ~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~ 114 (263)
T 2olj_A 35 GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114 (263)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTT
T ss_pred CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCC
Confidence 456799999999 8999999999999999999999976531100 0012332110 01
Q ss_pred cchhH----------------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 496 VPWFD----------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 496 i~~~~----------------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
+...+ .++..++..+......+++|++++ |+..+.+++.+|++|||||||+||||..
T Consensus 115 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~ 194 (263)
T 2olj_A 115 MTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM 194 (263)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence 11111 123334444444555677888664 5566667899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
...+. .++..+.+.|.| ||++|||.+.. .+|+++..+.+|.+.++
T Consensus 195 ~~~~~-~~l~~l~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
T 2olj_A 195 VGEVL-SVMKQLANEGMT-MVVVTHEMGFAREVGDRVLFMDGGYIIEE 240 (263)
T ss_dssp HHHHH-HHHHHHHHTTCE-EEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHH-HHHHHHHhCCCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 77775 455666666887 99999998776 58999999999998764
No 14
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.84 E-value=7.2e-21 Score=211.05 Aligned_cols=155 Identities=14% Similarity=0.179 Sum_probs=113.3
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh------------------------ccccccccccc--cc
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA------------------------KSGLHILSSEY--AK 495 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~------------------------q~G~~vpa~~~--~~ 495 (844)
..++++++|+ ..|++++|+||||||||||||+|+++.... ..| ++|+... ..
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig-~v~Q~~~l~~~ 119 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIG-MIFQHFNLLSS 119 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEE-EECSSCCCCTT
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEE-EEeCCCccCCC
Confidence 4689999999 899999999999999999999997653110 111 2332110 01
Q ss_pred cchh---------------------HHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 496 VPWF---------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 496 i~~~---------------------~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
+.+. ..++..+|..+......+++|++++ |+..+.+++.+|++|||||||+||||...
T Consensus 120 ~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~ 199 (366)
T 3tui_C 120 RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT 199 (366)
T ss_dssp SCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 1111 1234445666656667788898765 55666678999999999999999999888
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 554 TALGMSLLEAFAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 554 ~al~~~Ile~L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
..+. .++..+.+ .|.| ||++|||++.+ .+|+++..+.+|.+..++
T Consensus 200 ~~i~-~lL~~l~~~~g~T-ii~vTHdl~~~~~~aDrv~vl~~G~iv~~g 246 (366)
T 3tui_C 200 RSIL-ELLKDINRRLGLT-ILLITHEMDVVKRICDCVAVISNGELIEQD 246 (366)
T ss_dssp HHHH-HHHHHHHHHSCCE-EEEEESCHHHHHHHCSEEEEEETTEEEECC
T ss_pred HHHH-HHHHHHHHhCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEEc
Confidence 8776 45566654 5887 99999998876 689999999999997644
No 15
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.84 E-value=4.3e-21 Score=201.67 Aligned_cols=157 Identities=14% Similarity=0.158 Sum_probs=108.3
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------cc-ccccccccc--ccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KS-GLHILSSEY--AKV 496 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~-G~~vpa~~~--~~i 496 (844)
+++.++++++|+ ..|++++|+||||||||||||+|+++.... .. -.++|+... ..+
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~l 96 (240)
T 1ji0_A 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTS
T ss_pred CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCC
Confidence 346799999999 899999999999999999999997642110 00 112332110 011
Q ss_pred chhHHH--------------------hhhC-CchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHH
Q 003142 497 PWFDSV--------------------FADI-GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGT 554 (844)
Q Consensus 497 ~~~~~i--------------------~~~i-g~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~ 554 (844)
...+.+ +..+ +..+......+++|+++ |++..+.+++.+|++|||||||+||||....
T Consensus 97 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~ 176 (240)
T 1ji0_A 97 TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS 176 (240)
T ss_dssp BHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHH
T ss_pred cHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 112221 2222 12222333445677766 5566667789999999999999999998777
Q ss_pred HHHHHHHHHHHhcCCeEEEEEccchhH-HhhhccccceeeeEEEEe
Q 003142 555 ALGMSLLEAFAESGSLLTIATTHHGEL-KTLKYSNDFFENACMEFD 599 (844)
Q Consensus 555 al~~~Ile~L~~~g~t~vIitTHd~el-~~~a~~~~~v~ng~v~fd 599 (844)
.+.. ++..+.+.|.| ||++|||.+. ..+|+++..+.+|++...
T Consensus 177 ~l~~-~l~~~~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 220 (240)
T 1ji0_A 177 EVFE-VIQKINQEGTT-ILLVEQNALGALKVAHYGYVLETGQIVLE 220 (240)
T ss_dssp HHHH-HHHHHHHTTCC-EEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHH-HHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 7764 55666667887 9999999865 479999999999998654
No 16
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.84 E-value=4e-21 Score=203.88 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=110.4
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh---------------------ccccccccccc--ccc
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA---------------------KSGLHILSSEY--AKV 496 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~---------------------q~G~~vpa~~~--~~i 496 (844)
+++.++++++|+ ..|++++|+||||||||||||+|+++.... ..-.++|+... ..+
T Consensus 18 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 97 (257)
T 1g6h_A 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97 (257)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS
T ss_pred CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCC
Confidence 456799999999 899999999999999999999996542110 00012222100 001
Q ss_pred chhH----------------------------------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEE
Q 003142 497 PWFD----------------------------------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLL 541 (844)
Q Consensus 497 ~~~~----------------------------------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLL 541 (844)
...+ .++..++..+......+++|++++ ++..+.+++.+|++|||
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllL 177 (257)
T 1g6h_A 98 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVM 177 (257)
T ss_dssp BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1111 223334444444555667888665 55666678999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 542 DEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 542 DEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
||||+||||.....+. .++..+.+.|.| ||++|||.+.. .+|+++..+.+|.+.++
T Consensus 178 DEPts~LD~~~~~~l~-~~l~~l~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (257)
T 1g6h_A 178 DEPIAGVAPGLAHDIF-NHVLELKAKGIT-FLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234 (257)
T ss_dssp ESTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred eCCccCCCHHHHHHHH-HHHHHHHHCCCE-EEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999998877776 455666666887 99999998765 69999999999988654
No 17
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.83 E-value=1.2e-20 Score=199.91 Aligned_cols=153 Identities=15% Similarity=0.070 Sum_probs=110.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------ccccccccc--ccch------------
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA--KVPW------------ 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------~~vpa~~~~--~i~~------------ 498 (844)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|+.... ....
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 95 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI-QGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHI 95 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS-EEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGS
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhc
Confidence 46789999999 889999999999999999999997653211 11 123321100 1111
Q ss_pred -------------hHHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 003142 499 -------------FDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAF 564 (844)
Q Consensus 499 -------------~~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L 564 (844)
...++..++..+......+++|++++ ++..+.+++.+|++|||||||+||||.....+.. ++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~l 174 (253)
T 2nq2_C 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLS-LLIDL 174 (253)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHH-HHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 12233445555555566778888664 5666667899999999999999999988777764 55556
Q ss_pred Hhc-CCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 565 AES-GSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 565 ~~~-g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
.+. |.| ||++|||.++. .+|+++..+.+|. ..
T Consensus 175 ~~~~g~t-vi~vtHd~~~~~~~~d~v~~l~~G~-~~ 208 (253)
T 2nq2_C 175 AQSQNMT-VVFTTHQPNQVVAIANKTLLLNKQN-FK 208 (253)
T ss_dssp HHTSCCE-EEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred HHhcCCE-EEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence 655 887 99999998776 6999999999888 54
No 18
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.83 E-value=1.4e-20 Score=209.78 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=113.9
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-----cc-------------ccccccccc---ccch
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-------------LHILSSEYA---KVPW 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-----~G-------------~~vpa~~~~---~i~~ 498 (844)
++..++++++|+ ..|++++|+||||||||||||+|+++..... .| .++++ ... .+.+
T Consensus 14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ-~~~l~p~ltV 92 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ-SYALYPHLSV 92 (381)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT-TCCCCTTSCH
T ss_pred CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec-CCcCCCCCCH
Confidence 456799999999 8999999999999999999999976532111 00 11222 111 1111
Q ss_pred h---------------------HHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 499 F---------------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 499 ~---------------------~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
. ..++..++..+......+++|++++ |+..+.+++.+|++|||||||+|||+.....+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l 172 (381)
T 3rlf_A 93 AENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172 (381)
T ss_dssp HHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence 1 1234455666666667788888665 55666678899999999999999999888887
Q ss_pred HHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 557 GMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 557 ~~~Ile~L~-~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
.. ++..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+....
T Consensus 173 ~~-~l~~l~~~~g~t-ii~vTHd~~ea~~~aDri~vl~~G~i~~~g 216 (381)
T 3rlf_A 173 RI-EISRLHKRLGRT-MIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (381)
T ss_dssp HH-HHHHHHHHHCCE-EEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HH-HHHHHHHhCCCE-EEEEECCHHHHHHhCCEEEEEECCEEEEEe
Confidence 65 445554 55887 99999998665 699999999999997543
No 19
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.83 E-value=2.2e-20 Score=206.77 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=111.5
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-----cc-------------ccccccc--ccccchh
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-------------LHILSSE--YAKVPWF 499 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-----~G-------------~~vpa~~--~~~i~~~ 499 (844)
++..++++++|+ ..|++++|+||||||||||||+|+++..... .| .++++.. ...+...
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY 105 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH
Confidence 345689999999 8899999999999999999999976532110 00 1122200 0001111
Q ss_pred ---------------------HHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 500 ---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 500 ---------------------~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
..++..++..+......+++|+++ ||+..+.+++.+|++|||||||+|||+.....+.
T Consensus 106 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 185 (355)
T 1z47_A 106 DNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185 (355)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 123344555555566677888866 5566667889999999999999999998888776
Q ss_pred HHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 558 MSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 558 ~~Ile~L~-~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
..| ..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+...
T Consensus 186 ~~l-~~l~~~~g~t-vi~vTHd~~~a~~~adri~vl~~G~i~~~ 227 (355)
T 1z47_A 186 TFV-RQVHDEMGVT-SVFVTHDQEEALEVADRVLVLHEGNVEQF 227 (355)
T ss_dssp HHH-HHHHHHHTCE-EEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHH-HHHHHhcCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 544 4554 45887 99999998765 68999999999988643
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.83 E-value=2.3e-20 Score=207.05 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=112.4
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-------------------ccccccccc--ccccch
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------------------SGLHILSSE--YAKVPW 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-------------------~G~~vpa~~--~~~i~~ 498 (844)
++..++++++|+ ..|++++|+||||||||||||+|+++..... .| ++++.. ...+..
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig-~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVG-MVFQNYALYPHMTV 92 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEE-EECSSCCCCTTSCH
T ss_pred CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEE-EEecCcccCCCCCH
Confidence 456789999999 8899999999999999999999976532110 11 122210 001111
Q ss_pred ---------------------hHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 499 ---------------------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 499 ---------------------~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
+..++..++..+......+++|+++ ||+..+.+++.+|++|||||||+|||+.....+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 172 (359)
T 2yyz_A 93 FENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIM 172 (359)
T ss_dssp HHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 1223444555555566677888866 556666788999999999999999999888877
Q ss_pred HHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 557 GMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 557 ~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
...+.+...+.|.| +|++|||.+.+ .+|+++..+.+|.+...
T Consensus 173 ~~~l~~l~~~~g~t-vi~vTHd~~~~~~~adri~vl~~G~i~~~ 215 (359)
T 2yyz_A 173 RAEIKHLQQELGIT-SVYVTHDQAEAMTMASRIAVFNQGKLVQY 215 (359)
T ss_dssp HHHHHHHHHHHCCE-EEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHhcCCE-EEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 65444433445887 99999998765 69999999999988653
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.83 E-value=2.5e-20 Score=196.03 Aligned_cols=153 Identities=14% Similarity=0.106 Sum_probs=107.5
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc------------------cccccccccc--cccchh----
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------SGLHILSSEY--AKVPWF---- 499 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q------------------~G~~vpa~~~--~~i~~~---- 499 (844)
++++++|+ .. ++++|+||||||||||||+|+++..... .-.++|.... ..+...
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~ 92 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHH
Confidence 48899999 77 9999999999999999999976532110 0012222110 001111
Q ss_pred ---------------HHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHH
Q 003142 500 ---------------DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 563 (844)
Q Consensus 500 ---------------~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~ 563 (844)
..++..++..+......+++|++++ |+..+.+++.+|++|||||||+||||.....+.. ++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~-~l~~ 171 (240)
T 2onk_A 93 YGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME-ELRF 171 (240)
T ss_dssp TTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHH-HHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH-HHHH
Confidence 1233445555445556678888765 5566667899999999999999999977777764 5555
Q ss_pred HHh-cCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 564 FAE-SGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 564 L~~-~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
+.+ .|.| ||++|||.+.. .+|+++..+.+|.+..+.
T Consensus 172 l~~~~g~t-vi~vtHd~~~~~~~~d~i~~l~~G~i~~~g 209 (240)
T 2onk_A 172 VQREFDVP-ILHVTHDLIEAAMLADEVAVMLNGRIVEKG 209 (240)
T ss_dssp HHHHHTCC-EEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 654 4887 99999998765 789999999999987643
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.83 E-value=1.7e-20 Score=200.07 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=112.6
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh-----------------ccccccccccc---cccch---
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-----------------KSGLHILSSEY---AKVPW--- 498 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-----------------q~G~~vpa~~~---~~i~~--- 498 (844)
+.++++++|+ ..|++++|+||||||||||||+|+++.... +.-.++|.... .....
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~en 99 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDE 99 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHH
Confidence 5689999999 899999999999999999999997542110 00112333110 00111
Q ss_pred -----------------hHHHhhhCCch--hhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHH
Q 003142 499 -----------------FDSVFADIGDE--QSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGM 558 (844)
Q Consensus 499 -----------------~~~i~~~ig~~--q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~ 558 (844)
+..++..+|.. +......+++|++++ |+..+.+++.+|++|||||||+|||+.....+.
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~- 178 (266)
T 2yz2_A 100 VAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL- 178 (266)
T ss_dssp HHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHH-
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHH-
Confidence 12334455665 555666778888764 566666789999999999999999997777775
Q ss_pred HHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 559 SLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 559 ~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
.++..+.+.|.| ||++|||.++. .+|+++..+.+|.+..+.
T Consensus 179 ~~l~~l~~~g~t-ii~vtHd~~~~~~~~d~v~~l~~G~i~~~g 220 (266)
T 2yz2_A 179 RIVEKWKTLGKT-VILISHDIETVINHVDRVVVLEKGKKVFDG 220 (266)
T ss_dssp HHHHHHHHTTCE-EEEECSCCTTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 455666656887 99999998776 589999999999987543
No 23
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.82 E-value=1.9e-20 Score=198.05 Aligned_cols=154 Identities=17% Similarity=0.153 Sum_probs=110.3
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh-c------------------cccccccccc--cccch---
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-K------------------SGLHILSSEY--AKVPW--- 498 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-q------------------~G~~vpa~~~--~~i~~--- 498 (844)
.++++++|+ ..|++++|+||||||||||||+|+++.... . .-.++|.... ..+..
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY 93 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence 589999999 889999999999999999999997653211 0 0012222110 00111
Q ss_pred -------------hHHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCc-------EEEEecCCCCCCHHHHHHHH
Q 003142 499 -------------FDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQS-------LVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 499 -------------~~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~-------LLLLDEP~sGlDp~~~~al~ 557 (844)
+..++..++..+......+++|++++ ++..+.+++.+|+ +|||||||+|||+.....+.
T Consensus 94 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~ 173 (249)
T 2qi9_C 94 LTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 173 (249)
T ss_dssp HHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHH
T ss_pred HHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHH
Confidence 12233445555555566678888765 4555667788999 99999999999998777776
Q ss_pred HHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 558 MSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 558 ~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.++..+.+.|.| ||++|||.++. .+|+++..+.+|.+..+
T Consensus 174 -~~l~~l~~~g~t-viivtHd~~~~~~~~d~v~~l~~G~i~~~ 214 (249)
T 2qi9_C 174 -KILSALSQQGLA-IVMSSHDLNHTLRHAHRAWLLKGGKMLAS 214 (249)
T ss_dssp -HHHHHHHHTTCE-EEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred -HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 455666656887 99999998876 69999999999988754
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.82 E-value=2.1e-20 Score=197.29 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=107.0
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------cccccccccccc-ccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSGLHILSSEYA-KVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~G~~vpa~~~~-~i~~~ 499 (844)
++.++++++|+ ..|++++|+||||||||||||+|+++.... +.-.++|+.... ...+.
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 100 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSII 100 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHH
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHH
Confidence 45799999999 899999999999999999999997652110 001123321100 01112
Q ss_pred HHH---------------hhhCCchhhHhh-----------hhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 500 DSV---------------FADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 500 ~~i---------------~~~ig~~q~i~~-----------~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
+.+ +..++..+.+.. ..+++|+++ +++..+.+++.+|++|||||||+|||+..
T Consensus 101 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~ 180 (247)
T 2ff7_A 101 DNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180 (247)
T ss_dssp HHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 222 111222222221 125688766 55666677899999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
...+.. ++..+. .|.| ||++||+.++...|+++..+.+|.+....
T Consensus 181 ~~~i~~-~l~~~~-~g~t-viivtH~~~~~~~~d~v~~l~~G~i~~~g 225 (247)
T 2ff7_A 181 EHVIMR-NMHKIC-KGRT-VIIIAHRLSTVKNADRIIVMEKGKIVEQG 225 (247)
T ss_dssp HHHHHH-HHHHHH-TTSE-EEEECSSGGGGTTSSEEEEEETTEEEEEE
T ss_pred HHHHHH-HHHHHc-CCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEEC
Confidence 777764 555554 5887 99999999888789999999999987543
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.82 E-value=1.3e-20 Score=201.64 Aligned_cols=155 Identities=12% Similarity=0.082 Sum_probs=105.8
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------ccccccccccc-cccchhH
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSGLHILSSEY-AKVPWFD 500 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~G~~vpa~~~-~~i~~~~ 500 (844)
+.++++++|. ..|++++|+||||||||||||+|+++.... +.-.++|+... ....+.+
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 111 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE 111 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHH
Confidence 5789999999 899999999999999999999997643110 00112332110 0012222
Q ss_pred HHhh-------------------------hC--CchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 501 SVFA-------------------------DI--GDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 501 ~i~~-------------------------~i--g~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
.+.. .+ |....+....+++|+++ +|+..+.+++.+|+||||||||+|||+..
T Consensus 112 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~ 191 (271)
T 2ixe_A 112 NIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191 (271)
T ss_dssp HHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred HHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 2211 11 11111223345678766 55666778899999999999999999977
Q ss_pred HHHHHHHHHHHHH-hcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFA-ESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~-~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
...+.. ++..+. +.|.| ||++||+.++...|+++..+.+|.+..+
T Consensus 192 ~~~i~~-~l~~~~~~~g~t-viivtHd~~~~~~~d~v~~l~~G~i~~~ 237 (271)
T 2ixe_A 192 QLRVQR-LLYESPEWASRT-VLLITQQLSLAERAHHILFLKEGSVCEQ 237 (271)
T ss_dssp HHHHHH-HHHHCTTTTTSE-EEEECSCHHHHTTCSEEEEEETTEEEEE
T ss_pred HHHHHH-HHHHHHhhcCCE-EEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 777654 555554 34787 9999999988878999999999988654
No 26
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.82 E-value=2.6e-20 Score=206.77 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=111.6
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-----cc-------------ccccccc--ccccchh
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-------------LHILSSE--YAKVPWF 499 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-----~G-------------~~vpa~~--~~~i~~~ 499 (844)
++..++++++|+ ..|++++|+||||||||||||+|+++..... .| .++++.. ...+...
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (362)
T 2it1_A 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVY 93 (362)
T ss_dssp SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHH
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHH
Confidence 356789999999 8899999999999999999999976532110 00 1222210 0011111
Q ss_pred H---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHH
Q 003142 500 D---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALG 557 (844)
Q Consensus 500 ~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~ 557 (844)
+ +++..++..+......+++|+++ ||+..+.+++.+|++|||||||+|||+.....+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~ 173 (362)
T 2it1_A 94 KNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVR 173 (362)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH
Confidence 1 22334455555555667888866 5566667889999999999999999998888776
Q ss_pred HHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 558 MSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 558 ~~Ile~L~-~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
.. +..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+...
T Consensus 174 ~~-l~~l~~~~g~t-vi~vTHd~~~a~~~adri~vl~~G~i~~~ 215 (362)
T 2it1_A 174 AE-LKRLQKELGIT-TVYVTHDQAEALAMADRIAVIREGEILQV 215 (362)
T ss_dssp HH-HHHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HH-HHHHHHhCCCE-EEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 54 45554 45887 99999998765 69999999999998754
No 27
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.82 E-value=3.3e-20 Score=206.80 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=111.2
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-----cc-------------------ccccccc--c
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG-------------------LHILSSE--Y 493 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-----~G-------------------~~vpa~~--~ 493 (844)
++..++++++|+ ..|++++|+||||||||||||+|+++..... .| .++++.. .
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~ 93 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCC
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccC
Confidence 356789999999 8999999999999999999999976532110 00 0122200 0
Q ss_pred cccchhH---------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 494 AKVPWFD---------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 494 ~~i~~~~---------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
..+...+ .++..++..+......+++|+++ ||+..+.+++.+|++|||||||+|||+.
T Consensus 94 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~ 173 (372)
T 1g29_1 94 PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173 (372)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 0111111 12333444444455667788866 5566667789999999999999999998
Q ss_pred HHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEec
Q 003142 552 EGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFDE 600 (844)
Q Consensus 552 ~~~al~~~Ile~L~-~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd~ 600 (844)
....+...| ..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+....
T Consensus 174 ~r~~l~~~l-~~l~~~~g~t-vi~vTHd~~~a~~~adri~vl~~G~i~~~g 222 (372)
T 1g29_1 174 LRVRMRAEL-KKLQRQLGVT-TIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222 (372)
T ss_dssp HHHHHHHHH-HHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHH-HHHHHhcCCE-EEEECCCHHHHHHhCCEEEEEeCCEEEEeC
Confidence 888876544 4554 45887 99999998766 699999999999987543
No 28
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.82 E-value=3.6e-20 Score=204.73 Aligned_cols=155 Identities=15% Similarity=0.130 Sum_probs=110.7
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc------------------ccccccccc--ccccch--
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------------------SGLHILSSE--YAKVPW-- 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q------------------~G~~vpa~~--~~~i~~-- 498 (844)
+. +.++++|+ ..|++++|+||||||||||||+|+++..... .-.++++.. ...+..
T Consensus 13 ~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 13 NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 45 89999999 8999999999999999999999976532110 001222210 001111
Q ss_pred ----------------hHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHH
Q 003142 499 ----------------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 561 (844)
Q Consensus 499 ----------------~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Il 561 (844)
+..++..++..+......+++|+++ ||+..+.+++.+|++|||||||+|||+.....+.. ++
T Consensus 92 nl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~-~l 170 (348)
T 3d31_A 92 NLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE-ML 170 (348)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHH-HH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH-HH
Confidence 1223444555555556677888866 55666678899999999999999999988887765 44
Q ss_pred HHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 562 EAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 562 e~L~-~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
..+. +.|.| +|++|||.+.. .+|+++..+.+|.+...
T Consensus 171 ~~l~~~~g~t-ii~vTHd~~~~~~~adri~vl~~G~i~~~ 209 (348)
T 3d31_A 171 SVLHKKNKLT-VLHITHDQTEARIMADRIAVVMDGKLIQV 209 (348)
T ss_dssp HHHHHHTTCE-EEEEESCHHHHHHHCSEEEEESSSCEEEE
T ss_pred HHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 5554 45887 99999997765 79999999999988653
No 29
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.82 E-value=1e-20 Score=197.53 Aligned_cols=156 Identities=17% Similarity=0.096 Sum_probs=105.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------ccccccccc-ccchhHHH---------
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSV--------- 502 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------~~vpa~~~~-~i~~~~~i--------- 502 (844)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... .....+.+
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~ 98 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS-EGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEY 98 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS-EEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC-ccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChH
Confidence 46799999999 899999999999999999999997653211 11 123331100 00111111
Q ss_pred -----hhhCCchhhHhh-----------hhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 003142 503 -----FADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565 (844)
Q Consensus 503 -----~~~ig~~q~i~~-----------~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~ 565 (844)
....+..+.+.. ...++|+++ +|+..+.+++.+|+++||||||+|||+.....+...++..+.
T Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 178 (229)
T 2pze_A 99 RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 178 (229)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh
Confidence 112222222211 125788766 456666778999999999999999999777766543333333
Q ss_pred hcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 566 ESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 566 ~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
.+.| +|++||+.++..+|+++..+.+|.+....
T Consensus 179 -~~~t-vi~vtH~~~~~~~~d~v~~l~~G~i~~~g 211 (229)
T 2pze_A 179 -ANKT-RILVTSKMEHLKKADKILILHEGSSYFYG 211 (229)
T ss_dssp -TTSE-EEEECCCHHHHHHCSEEEEEETTEEEEEE
T ss_pred -CCCE-EEEEcCChHHHHhCCEEEEEECCEEEEEC
Confidence 3776 99999998887789999999999887543
No 30
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.82 E-value=3.6e-20 Score=195.76 Aligned_cols=157 Identities=16% Similarity=0.125 Sum_probs=104.5
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH-Hhhccc----------------------ccccccccc--
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSG----------------------LHILSSEYA-- 494 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~-~~~q~G----------------------~~vpa~~~~-- 494 (844)
+++.++++++|+ ..|++++|+||||||||||||+|+++. +.+..| .++|+....
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVP 93 (250)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CC
T ss_pred CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCcccc
Confidence 356799999999 899999999999999999999998751 111111 122321100
Q ss_pred ccchhH------------------------HHhhhCCc-hhhHhhhhhh-hhHHhh-HHHHHHHhCCCCcEEEEecCCCC
Q 003142 495 KVPWFD------------------------SVFADIGD-EQSLSQSLST-FSGHLK-QIGNIISQSTSQSLVLLDEIGAG 547 (844)
Q Consensus 495 ~i~~~~------------------------~i~~~ig~-~q~i~~~lst-fS~~~~-rl~~il~~a~~p~LLLLDEP~sG 547 (844)
.+...+ .++..++. .+......++ +|++++ ++..+.+++.+|++|||||||+|
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~ 173 (250)
T 2d2e_A 94 GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSG 173 (250)
T ss_dssp SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGT
T ss_pred CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcC
Confidence 011111 11222333 2333444566 888665 55666678899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-h-hccccceeeeEEEEe
Q 003142 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-L-KYSNDFFENACMEFD 599 (844)
Q Consensus 548 lDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~-~-a~~~~~v~ng~v~fd 599 (844)
||+.....+. .++..+.+.|.| ||++|||.++.. + |+++..+.+|.+..+
T Consensus 174 LD~~~~~~l~-~~l~~l~~~g~t-vi~vtHd~~~~~~~~~d~v~~l~~G~i~~~ 225 (250)
T 2d2e_A 174 LDIDALKVVA-RGVNAMRGPNFG-ALVITHYQRILNYIQPDKVHVMMDGRVVAT 225 (250)
T ss_dssp TCHHHHHHHH-HHHHHHCSTTCE-EEEECSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred CCHHHHHHHH-HHHHHHHhcCCE-EEEEecCHHHHHHhcCCEEEEEECCEEEEE
Confidence 9997777775 455666656887 999999988775 5 588888888888653
No 31
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.82 E-value=2.6e-20 Score=200.14 Aligned_cols=157 Identities=16% Similarity=0.073 Sum_probs=110.4
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc----------------------cccccccccc----
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK----------------------SGLHILSSEY---- 493 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q----------------------~G~~vpa~~~---- 493 (844)
+++.++++++|+ ..|++++|+||||||||||||+|+++..... .-.++|+...
T Consensus 32 ~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (279)
T 2ihy_A 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQ 111 (279)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSC
T ss_pred CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccC
Confidence 456799999999 8999999999999999999999975431110 0011221100
Q ss_pred cccchhH-------------------------HHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCC
Q 003142 494 AKVPWFD-------------------------SVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAG 547 (844)
Q Consensus 494 ~~i~~~~-------------------------~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sG 547 (844)
..+...+ .++..++..+......+++|+++ +|+..+.+++.+|+||||||||+|
T Consensus 112 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~ 191 (279)
T 2ihy_A 112 EGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAG 191 (279)
T ss_dssp TTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred CCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 0001111 12333444444455567788866 455666678999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEE--EEEccchhHH-hhhccccceeeeEEEEe
Q 003142 548 TNPLEGTALGMSLLEAFAESGSLLT--IATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 548 lDp~~~~al~~~Ile~L~~~g~t~v--IitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
||+.....+.. ++..+.+.|.| | |++|||.+.. .+|+++..+.+|.+.++
T Consensus 192 LD~~~~~~l~~-~l~~l~~~g~t-v~~iivtHd~~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 192 LDFIARESLLS-ILDSLSDSYPT-LAMIYVTHFIEEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp CCHHHHHHHHH-HHHHHHHHCTT-CEEEEEESCGGGCCTTCCEEEEEETTEEEEE
T ss_pred cCHHHHHHHHH-HHHHHHHCCCE-EEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99988777764 55566656887 8 9999998775 69999999999998764
No 32
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.81 E-value=4.7e-20 Score=205.47 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=111.1
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-------------------ccccccc--ccccch
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-------------------LHILSSE--YAKVPW 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-------------------~~vpa~~--~~~i~~ 498 (844)
++..++++++|+ ..|++++|+||||||||||||+|+++.... .| .++++.. ...+..
T Consensus 22 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~-~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT-EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS-EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 456789999999 899999999999999999999997653211 11 0122100 000111
Q ss_pred ---------------------hHHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHH
Q 003142 499 ---------------------FDSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTAL 556 (844)
Q Consensus 499 ---------------------~~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al 556 (844)
+..++..++..+......+++|+++ ||+..+.+++.+|++|||||||+|||+.....+
T Consensus 101 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 180 (372)
T 1v43_A 101 YENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM 180 (372)
T ss_dssp HHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 1123344455555555667788765 556677788999999999999999999888887
Q ss_pred HHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccceeeeEEEEe
Q 003142 557 GMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFFENACMEFD 599 (844)
Q Consensus 557 ~~~Ile~L~-~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~fd 599 (844)
...| ..+. +.|.| +|++|||.+.+ .+|+++..+.+|.+...
T Consensus 181 ~~~l-~~l~~~~g~t-vi~vTHd~~~a~~~adri~vl~~G~i~~~ 223 (372)
T 1v43_A 181 RAEI-KKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQLLQI 223 (372)
T ss_dssp HHHH-HHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHH-HHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 6544 4554 45887 99999998765 69999999999998653
No 33
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.81 E-value=4e-20 Score=204.84 Aligned_cols=156 Identities=14% Similarity=0.118 Sum_probs=110.0
Q ss_pred Ccc--ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc-----cc------------------ccccccc--c
Q 003142 442 AHP--VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-----SG------------------LHILSSE--Y 493 (844)
Q Consensus 442 ~~~--V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-----~G------------------~~vpa~~--~ 493 (844)
+.. ++++++|+ ..|++++|+||||||||||||+|+++..... .| .++++.. .
T Consensus 15 ~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~ 94 (353)
T 1oxx_K 15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94 (353)
T ss_dssp GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCC
T ss_pred CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccC
Confidence 345 89999999 8899999999999999999999976532110 00 0122200 0
Q ss_pred cccchh---------------------HHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 494 AKVPWF---------------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 494 ~~i~~~---------------------~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
..+... ..++..++..+......+++|+++ ||+..+.+++.+|++|||||||+|||+.
T Consensus 95 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~ 174 (353)
T 1oxx_K 95 PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174 (353)
T ss_dssp TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGG
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 011111 123344455555555667888866 5566667889999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceeeeEEEE
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ng~v~f 598 (844)
....+...|.+...+.|.| +|++|||.+.+ .+|+++..+.+|.+..
T Consensus 175 ~r~~l~~~l~~l~~~~g~t-vi~vTHd~~~~~~~adri~vl~~G~i~~ 221 (353)
T 1oxx_K 175 MRDSARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVGVLVKGKLVQ 221 (353)
T ss_dssp GHHHHHHHHHHHHHHHCCE-EEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 8888765444433445887 99999998765 6899999999998864
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.81 E-value=4e-20 Score=197.39 Aligned_cols=157 Identities=16% Similarity=0.137 Sum_probs=107.7
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH-Hhhccc----------------------ccccccccc--
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV-MMAKSG----------------------LHILSSEYA-- 494 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~-~~~q~G----------------------~~vpa~~~~-- 494 (844)
+++.++++++|+ ..|++++|+||||||||||||+|+++. +.+..| .++|.....
T Consensus 31 ~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~ 110 (267)
T 2zu0_C 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIP 110 (267)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCT
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccc
Confidence 456799999999 899999999999999999999998752 111111 122321100
Q ss_pred ccch----------------------------hHHHhhhCCch-hhHhhhhh-hhhHHhh-HHHHHHHhCCCCcEEEEec
Q 003142 495 KVPW----------------------------FDSVFADIGDE-QSLSQSLS-TFSGHLK-QIGNIISQSTSQSLVLLDE 543 (844)
Q Consensus 495 ~i~~----------------------------~~~i~~~ig~~-q~i~~~ls-tfS~~~~-rl~~il~~a~~p~LLLLDE 543 (844)
.+.. +..++..++.. +....... ++|++++ ++..+.+++.+|++|||||
T Consensus 111 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDE 190 (267)
T 2zu0_C 111 GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDE 190 (267)
T ss_dssp TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0000 01122233432 22233444 4888664 5566667889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh-h-hccccceeeeEEEEe
Q 003142 544 IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT-L-KYSNDFFENACMEFD 599 (844)
Q Consensus 544 P~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~-~-a~~~~~v~ng~v~fd 599 (844)
||+|||+.....+. .++..+.+.|.| ||++|||.++.. + |+++..+.+|.+..+
T Consensus 191 Pts~LD~~~~~~l~-~~l~~l~~~g~t-viivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 191 SDSGLDIDALKVVA-DGVNSLRDGKRS-FIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp TTTTCCHHHHHHHH-HHHHTTCCSSCE-EEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred CCCCCCHHHHHHHH-HHHHHHHhcCCE-EEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 99999997777765 455666556887 999999988775 4 899999999988754
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.80 E-value=1.1e-19 Score=193.70 Aligned_cols=149 Identities=16% Similarity=0.148 Sum_probs=107.8
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc-------------------ccccccccccchh---
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-------------------HILSSEYAKVPWF--- 499 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~-------------------~vpa~~~~~i~~~--- 499 (844)
+.++++++|+ . |++++|+||||||||||||+|+++. . ..|. ++|+......+..
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl 94 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P-YSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIV 94 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-CEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-CCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHH
Confidence 5689999999 8 9999999999999999999998765 2 2221 3333111011111
Q ss_pred --------------HHHhhhCCch-hhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHH
Q 003142 500 --------------DSVFADIGDE-QSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEA 563 (844)
Q Consensus 500 --------------~~i~~~ig~~-q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~ 563 (844)
..++..++.. +......+++|+++ +|+..+.+++.+|++|||||||+|||+.....+.. ++..
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~-~L~~ 173 (263)
T 2pjz_A 95 YLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISR-YIKE 173 (263)
T ss_dssp HHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHH-HHHH
T ss_pred HHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHH-HHHH
Confidence 1233445665 55666777888866 45666667899999999999999999977776654 4444
Q ss_pred HHhcCCeEEEEEccchhHH-hhhc-cccceeeeEEEEe
Q 003142 564 FAESGSLLTIATTHHGELK-TLKY-SNDFFENACMEFD 599 (844)
Q Consensus 564 L~~~g~t~vIitTHd~el~-~~a~-~~~~v~ng~v~fd 599 (844)
+.+ | +|++|||.++. .+|+ ++..+.+|.+...
T Consensus 174 ~~~---t-viivtHd~~~~~~~~d~~i~~l~~G~i~~~ 207 (263)
T 2pjz_A 174 YGK---E-GILVTHELDMLNLYKEYKAYFLVGNRLQGP 207 (263)
T ss_dssp SCS---E-EEEEESCGGGGGGCTTSEEEEEETTEEEEE
T ss_pred hcC---c-EEEEEcCHHHHHHhcCceEEEEECCEEEEe
Confidence 332 6 99999998765 6999 9999999998754
No 36
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.80 E-value=6.8e-20 Score=189.58 Aligned_cols=144 Identities=14% Similarity=0.090 Sum_probs=98.9
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh---------------cccccccccccc--ccchh------
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA---------------KSGLHILSSEYA--KVPWF------ 499 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~---------------q~G~~vpa~~~~--~i~~~------ 499 (844)
.++++++|+ ..|++++|+||||||||||||+|+++.... ..-.++|+.... .+...
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 102 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV 102 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 789999999 889999999999999999999997653110 001123331110 01111
Q ss_pred -------------HHHhhhCCchhhHhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 003142 500 -------------DSVFADIGDEQSLSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA 565 (844)
Q Consensus 500 -------------~~i~~~ig~~q~i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~ 565 (844)
..++..++.... ....+++|+++ +++..+.+++.+|++|||||||+||||.....+.. ++..+.
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~-~l~~~~ 180 (214)
T 1sgw_A 103 ASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK-SILEIL 180 (214)
T ss_dssp HHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHH-HHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHH-HHHHHH
Confidence 122333444444 55567788766 55666667899999999999999999988887764 555566
Q ss_pred hcCCeEEEEEccchhHHh-hhccccc
Q 003142 566 ESGSLLTIATTHHGELKT-LKYSNDF 590 (844)
Q Consensus 566 ~~g~t~vIitTHd~el~~-~a~~~~~ 590 (844)
+.|.| ||++||+.++.. +|+++..
T Consensus 181 ~~g~t-iiivtHd~~~~~~~~d~v~~ 205 (214)
T 1sgw_A 181 KEKGI-VIISSREELSYCDVNENLHK 205 (214)
T ss_dssp HHHSE-EEEEESSCCTTSSEEEEGGG
T ss_pred hCCCE-EEEEeCCHHHHHHhCCEEEE
Confidence 56787 999999987764 5665543
No 37
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.80 E-value=3.2e-20 Score=195.35 Aligned_cols=152 Identities=13% Similarity=0.146 Sum_probs=103.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccc-ccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA-KVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~-~i~~ 498 (844)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|..... ....
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv 92 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT-AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTI 92 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS-BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEH
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccH
Confidence 46789999999 899999999999999999999997653211 11 122221100 0011
Q ss_pred hHHH----------------hhhCCchhhHh-----------hhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 499 FDSV----------------FADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 499 ~~~i----------------~~~ig~~q~i~-----------~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
.+.+ +..++..+.+. ...+++|+++ +|+..+.+++.+|++|||||||+||||
T Consensus 93 ~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~ 172 (243)
T 1mv5_A 93 RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172 (243)
T ss_dssp HHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCS
T ss_pred HHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 1111 11112111111 1224678766 556666678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEE
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACME 597 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~ 597 (844)
.....+.. ++..+. .|.| ||++||+.+...+|+++..+.+|.+.
T Consensus 173 ~~~~~i~~-~l~~~~-~~~t-vi~vtH~~~~~~~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 173 ESESMVQK-ALDSLM-KGRT-TLVIAHRLSTIVDADKIYFIEKGQIT 216 (243)
T ss_dssp SSCCHHHH-HHHHHH-TTSE-EEEECCSHHHHHHCSEEEEEETTEEC
T ss_pred HHHHHHHH-HHHHhc-CCCE-EEEEeCChHHHHhCCEEEEEECCEEE
Confidence 88887765 555555 5887 99999999887789999888888875
No 38
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.79 E-value=6.9e-20 Score=192.21 Aligned_cols=155 Identities=10% Similarity=0.074 Sum_probs=104.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------cccccccc-cccchhHHHh--------
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEY-AKVPWFDSVF-------- 503 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------~~vpa~~~-~~i~~~~~i~-------- 503 (844)
++.++++++|+ ..|++++|+||||||||||||+|+++.... .| .++|+... ......+.+.
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~i~~v~Q~~~~~~~tv~enl~~~~~~~~~ 95 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEP 95 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE-EEEEEECSCEEEECSSCCCCSEEHHHHHHTTSCCCTT
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEEEEcCCCcCCCcCHHHHhhCccccCHH
Confidence 45789999999 899999999999999999999997653211 11 12333110 0111222221
Q ss_pred ------hhCCchhh-----------HhhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHH--HH
Q 003142 504 ------ADIGDEQS-----------LSQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL--EA 563 (844)
Q Consensus 504 ------~~ig~~q~-----------i~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Il--e~ 563 (844)
..++..+. +....+.+|+++ +|+..+.+++.+|++|||||||+||||.....+...+. ..
T Consensus 96 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 175 (237)
T 2cbz_A 96 YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKG 175 (237)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTS
T ss_pred HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHh
Confidence 11111111 122345778766 55666677899999999999999999977777654442 22
Q ss_pred HHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 564 FAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 564 L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
+ ..|.| +|++||+.++..+|+++..+.+|.+...
T Consensus 176 ~-~~~~t-viivtH~~~~~~~~d~v~~l~~G~i~~~ 209 (237)
T 2cbz_A 176 M-LKNKT-RILVTHSMSYLPQVDVIIVMSGGKISEM 209 (237)
T ss_dssp T-TTTSE-EEEECSCSTTGGGSSEEEEEETTEEEEE
T ss_pred h-cCCCE-EEEEecChHHHHhCCEEEEEeCCEEEEe
Confidence 2 24776 9999999888778999999999988643
No 39
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.79 E-value=3.5e-19 Score=189.41 Aligned_cols=152 Identities=12% Similarity=0.027 Sum_probs=103.9
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------cccccccc-ccchh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYA-KVPWF 499 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~~~~-~i~~~ 499 (844)
+.++++++|+ ..|++++|+||||||||||||+|+++.. . .|. ++|+.... ...+.
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 110 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIK 110 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHH
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHH
Confidence 4689999999 8999999999999999999999976532 1 121 22221100 01111
Q ss_pred HHHh---------------hhCCchhhHh-----------hhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 500 DSVF---------------ADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 500 ~~i~---------------~~ig~~q~i~-----------~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
+.+. ..++..+.+. ....++|+++ +|+..+.+++.+|++|||||||+|||+..
T Consensus 111 enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 190 (260)
T 2ghi_A 111 YNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190 (260)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHH
T ss_pred HHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 2221 1112222111 1224678766 55666677899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
...+. .++..+.+ +.| ||++||+.++...|+++..+.+|.+...
T Consensus 191 ~~~i~-~~l~~l~~-~~t-viivtH~~~~~~~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 191 EYLFQ-KAVEDLRK-NRT-LIIIAHRLSTISSAESIILLNKGKIVEK 234 (260)
T ss_dssp HHHHH-HHHHHHTT-TSE-EEEECSSGGGSTTCSEEEEEETTEEEEE
T ss_pred HHHHH-HHHHHhcC-CCE-EEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 77765 45555654 776 9999999888778999998988988653
No 40
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.78 E-value=7.4e-20 Score=197.62 Aligned_cols=154 Identities=18% Similarity=0.110 Sum_probs=104.5
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------ccccccccc-ccchhHHHh---------
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA-KVPWFDSVF--------- 503 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------~~vpa~~~~-~i~~~~~i~--------- 503 (844)
+.++++++|. ..|++++|+||||||||||||+|+++... ..| .++|+.... .....+.+.
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~ 129 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-SEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRY 129 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE-EEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHH
Confidence 5789999999 89999999999999999999999765321 111 133331100 012222222
Q ss_pred ----hhCCchhhHhh-----------hhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 003142 504 ----ADIGDEQSLSQ-----------SLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567 (844)
Q Consensus 504 ----~~ig~~q~i~~-----------~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~ 567 (844)
...+..+.+.. ....+|++++ ++..+.+++.+|+++||||||+|||+.....+...++..+. .
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~ 208 (290)
T 2bbs_A 130 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A 208 (290)
T ss_dssp HHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-T
T ss_pred HHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-C
Confidence 11222222211 1246887664 55666678999999999999999999777766543333333 4
Q ss_pred CCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 568 GSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 568 g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
|.| ||++||+.++..+|+++..+.+|.+.+.
T Consensus 209 ~~t-viivtHd~~~~~~~d~i~~l~~G~i~~~ 239 (290)
T 2bbs_A 209 NKT-RILVTSKMEHLKKADKILILHEGSSYFY 239 (290)
T ss_dssp TSE-EEEECCCHHHHHHSSEEEEEETTEEEEE
T ss_pred CCE-EEEEecCHHHHHcCCEEEEEECCeEEEe
Confidence 776 9999999988888999999999988653
No 41
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.77 E-value=7.7e-19 Score=190.96 Aligned_cols=157 Identities=13% Similarity=0.107 Sum_probs=106.6
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccccccccccc-ccch
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYA-KVPW 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~~vpa~~~~-~i~~ 498 (844)
++..|+++++|. .+|++++|+||||||||||+|+|+++.-... .-.++|+.... ...+
T Consensus 65 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv 144 (306)
T 3nh6_A 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTI 144 (306)
T ss_dssp TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEH
T ss_pred CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccH
Confidence 356799999999 8999999999999999999999965421110 01123331100 0112
Q ss_pred hHHHh---------------hhCCchhhHhh-----------hhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 499 FDSVF---------------ADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 499 ~~~i~---------------~~ig~~q~i~~-----------~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
.+++. ...+..+.+.. ....+|+++ ||+..+.+++.+|++|||||||+|||+.
T Consensus 145 ~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~ 224 (306)
T 3nh6_A 145 ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224 (306)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHH
T ss_pred HHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 22221 11122222221 113577765 5566677789999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
....+.. ++..+. .+.| +|++||+......|+++..+.+|.+...+
T Consensus 225 ~~~~i~~-~l~~l~-~~~T-vi~itH~l~~~~~aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 225 NERAIQA-SLAKVC-ANRT-TIVVAHRLSTVVNADQILVIKDGCIVERG 270 (306)
T ss_dssp HHHHHHH-HHHHHH-TTSE-EEEECCSHHHHHTCSEEEEEETTEEEEEE
T ss_pred HHHHHHH-HHHHHc-CCCE-EEEEEcChHHHHcCCEEEEEECCEEEEEC
Confidence 7777754 445554 3676 89999999888889999999999997543
No 42
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.75 E-value=9.6e-19 Score=196.03 Aligned_cols=153 Identities=14% Similarity=0.030 Sum_probs=109.4
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------cccccccccc--
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------HILSSEYAKV-- 496 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------~vpa~~~~~i-- 496 (844)
++..++++++|+ ..|++++|+||||||||||||+|+++.. ..|. ++++ ....+
T Consensus 32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q-~~~lf~~ 108 (390)
T 3gd7_A 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKAFGVIPQ-KVFIFSG 108 (390)
T ss_dssp SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHHHTEEEESC-CCCCCSE
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHhCCEEEEcC-CcccCcc
Confidence 456799999999 8999999999999999999999976532 1121 2222 11100
Q ss_pred chh--------------HHHhhhCCchhhHhhhhhh-----------hhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 497 PWF--------------DSVFADIGDEQSLSQSLST-----------FSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 497 ~~~--------------~~i~~~ig~~q~i~~~lst-----------fS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
.+. ..++..++..+.+...... +|+++ ||+..+.+++.+|++|||||||+|||+
T Consensus 109 tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~ 188 (390)
T 3gd7_A 109 TFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188 (390)
T ss_dssp EHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCH
T ss_pred CHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 111 1233344555555555555 78766 556667788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
.....+.. ++..+ ..+.| +|++||+.+...+|+++..+.+|.+...
T Consensus 189 ~~~~~l~~-~l~~~-~~~~t-vi~vtHd~e~~~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 189 VTYQIIRR-TLKQA-FADCT-VILCEARIEAMLECDQFLVIEENKVRQY 234 (390)
T ss_dssp HHHHHHHH-HHHTT-TTTSC-EEEECSSSGGGTTCSEEEEEETTEEEEE
T ss_pred HHHHHHHH-HHHHH-hCCCE-EEEEEcCHHHHHhCCEEEEEECCEEEEE
Confidence 77777654 44443 34676 9999999888888999999999998754
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.71 E-value=1.5e-17 Score=193.99 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=102.4
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc--------------------------------cccc
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------------------------------HILS 490 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~--------------------------------~vpa 490 (844)
++..+++ . ..|++++|+||||||||||||+|+++... ..|. ++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p-~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q 113 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP-NLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ 113 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC-CTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECS
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhh
Confidence 4778887 6 78899999999999999999999764311 1111 0010
Q ss_pred ccc--c-----cc----------chhHHHhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 491 SEY--A-----KV----------PWFDSVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 491 ~~~--~-----~i----------~~~~~i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
... . .+ .....++..+|.........+++|+++++ +..+.+++.+|+||||||||+|||+..
T Consensus 114 ~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~ 193 (538)
T 1yqt_A 114 YVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193 (538)
T ss_dssp CGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred hhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 000 0 00 01123455566666666777889987655 555567789999999999999999987
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceee
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 593 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~n 593 (844)
...+. .+++.+.+.|.| ||++|||.++. .+|+++..+.+
T Consensus 194 ~~~l~-~~L~~l~~~g~t-vi~vsHd~~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 194 RLNAA-RAIRRLSEEGKS-VLVVEHDLAVLDYLSDIIHVVYG 233 (538)
T ss_dssp HHHHH-HHHHHHHHTTCE-EEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHHhCCEEEEEcC
Confidence 77775 456666667887 99999998876 57888776654
No 44
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.71 E-value=1.6e-17 Score=193.58 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=99.6
Q ss_pred eeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------ccccccccc--ccch---------------
Q 003142 446 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------LHILSSEYA--KVPW--------------- 498 (844)
Q Consensus 446 ~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------~~vpa~~~~--~i~~--------------- 498 (844)
+...+++ ..|++++|+||||||||||||+|+++.... .| .++|..... ...+
T Consensus 284 l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 362 (538)
T 3ozx_A 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD-EGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTS 362 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS-BCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTT
T ss_pred EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchh
Confidence 3333444 678999999999999999999997653221 11 122221100 0111
Q ss_pred ---hHHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEE
Q 003142 499 ---FDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTI 573 (844)
Q Consensus 499 ---~~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~-~~g~t~vI 573 (844)
...++..++..+......+++||+++ |+..+.+++.+|++|||||||+|||+.....+.. ++..+. +.|.| ||
T Consensus 363 ~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~-~l~~l~~~~g~t-vi 440 (538)
T 3ozx_A 363 SWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAK-AIKRVTRERKAV-TF 440 (538)
T ss_dssp SHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHHHHTTCE-EE
T ss_pred HHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhCCCE-EE
Confidence 12334445566666677788998764 5566667899999999999999999988888765 445554 56887 99
Q ss_pred EEccchhHH-hhhccccceee
Q 003142 574 ATTHHGELK-TLKYSNDFFEN 593 (844)
Q Consensus 574 itTHd~el~-~~a~~~~~v~n 593 (844)
++|||.+++ .+|+++..+.+
T Consensus 441 ~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 441 IIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp EECSCHHHHHHHCSEEEEEEE
T ss_pred EEeCCHHHHHHhCCEEEEEeC
Confidence 999998877 47888877654
No 45
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.7e-17 Score=195.74 Aligned_cols=147 Identities=16% Similarity=0.133 Sum_probs=98.8
Q ss_pred ceeEEEEe-cCc-----eEEEEEccCCCCchhhHhhhhhHHHhhcccc--------cccccccc--ccchhH--------
Q 003142 445 VPIDIFIA-RKT-----RVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------HILSSEYA--KVPWFD-------- 500 (844)
Q Consensus 445 V~~disl~-~~g-----~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~--------~vpa~~~~--~i~~~~-------- 500 (844)
+..+++|+ ..| ++++|+||||||||||||+|+++.... .|. ++|..... .....+
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~-~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~ 440 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD-EGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRG 440 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS-BCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSS
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC-CCcCccCCcEEEecccccccCCccHHHHHHHHhhc
Confidence 45566666 444 789999999999999999997654322 121 22221110 001111
Q ss_pred ---------HHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe
Q 003142 501 ---------SVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSL 570 (844)
Q Consensus 501 ---------~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t 570 (844)
.++..++..+......+++||+++ |+..+.+++.+|++|||||||+|||+.....+...|.+...+.|.|
T Consensus 441 ~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~t 520 (608)
T 3j16_B 441 QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT 520 (608)
T ss_dssp TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 122333444444556678888665 5566667899999999999999999988888765444433567887
Q ss_pred EEEEEccchhHH-hhhccccceee
Q 003142 571 LTIATTHHGELK-TLKYSNDFFEN 593 (844)
Q Consensus 571 ~vIitTHd~el~-~~a~~~~~v~n 593 (844)
||++|||.++. .+|+++..+.+
T Consensus 521 -viivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 521 -AFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp -EEEECSCHHHHHHHCSEEEECEE
T ss_pred -EEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999998877 57888877764
No 46
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.70 E-value=2.7e-17 Score=196.59 Aligned_cols=85 Identities=20% Similarity=0.139 Sum_probs=68.2
Q ss_pred hhhhhhhhHHhhH-HHHHHHhCCCCc--EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003142 513 SQSLSTFSGHLKQ-IGNIISQSTSQS--LVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589 (844)
Q Consensus 513 ~~~lstfS~~~~r-l~~il~~a~~p~--LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~ 589 (844)
....+++|+++++ +..+.+++.+|+ ||||||||+||||.....+. .++..+.+.|.| ||+||||+++..+|+++.
T Consensus 197 ~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~-~~l~~l~~~g~t-vi~vtHd~~~~~~~d~ii 274 (670)
T 3ux8_A 197 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNT-LIVVEHDEDTMLAADYLI 274 (670)
T ss_dssp TCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHHTTCE-EEEECCCHHHHHHCSEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHH-HHHHHHHHcCCE-EEEEeCCHHHHhhCCEEE
Confidence 3456788887654 555556778877 99999999999998888876 566677778887 999999999888899988
Q ss_pred ce------eeeEEEEe
Q 003142 590 FF------ENACMEFD 599 (844)
Q Consensus 590 ~v------~ng~v~fd 599 (844)
.+ .+|.+.++
T Consensus 275 ~l~~g~~~~~G~i~~~ 290 (670)
T 3ux8_A 275 DIGPGAGIHGGEVVAA 290 (670)
T ss_dssp EECSSSGGGCCSEEEE
T ss_pred EecccccccCCEEEEe
Confidence 77 78888654
No 47
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.69 E-value=7e-17 Score=197.72 Aligned_cols=152 Identities=15% Similarity=0.170 Sum_probs=108.5
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh-----cc-cccccccc---ccccch------------
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA-----KS-GLHILSSE---YAKVPW------------ 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-----q~-G~~vpa~~---~~~i~~------------ 498 (844)
+++.++++++|. ..|++++|+||||||||||||+|++..+.. .. -.+++... ...+..
T Consensus 446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~ 525 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTK 525 (986)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCH
T ss_pred CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHH
Confidence 567899999999 889999999999999999999996321110 00 01222110 011111
Q ss_pred --hHHHhhhCCc-hhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Q 003142 499 --FDSVFADIGD-EQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIA 574 (844)
Q Consensus 499 --~~~i~~~ig~-~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIi 574 (844)
+..++..+|. ........+++|+++++ +..+.+++.+|++|||||||+|||+.....+.. ++.. .|.| +|+
T Consensus 526 ~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~-~L~~---~g~t-vIi 600 (986)
T 2iw3_A 526 EAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVN-YLNT---CGIT-SIT 600 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHH-HHHH---SCSE-EEE
T ss_pred HHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH-HHHh---CCCE-EEE
Confidence 2234556666 34566777889987755 555567789999999999999999977776654 3333 6787 999
Q ss_pred EccchhHH-hhhccccceeeeEEE
Q 003142 575 TTHHGELK-TLKYSNDFFENACME 597 (844)
Q Consensus 575 tTHd~el~-~~a~~~~~v~ng~v~ 597 (844)
+|||.++. .+|+++..+.+|.+.
T Consensus 601 vSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 601 ISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp ECSCHHHHHHHCSEEEEEETTEEE
T ss_pred EECCHHHHHHhCCEEEEEECCeee
Confidence 99998776 689999999999985
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.69 E-value=6.8e-17 Score=188.45 Aligned_cols=146 Identities=16% Similarity=0.078 Sum_probs=100.7
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------ccccccccc--ccch---------------
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA--KVPW--------------- 498 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------~~vpa~~~~--~i~~--------------- 498 (844)
.+..++|. ..|++++|+||||||||||||+|+++.... .| .++|+.... ...+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~ 379 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSN 379 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS-BCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHH
Confidence 34444455 678999999999999999999997653221 11 133331110 1111
Q ss_pred --hHHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEEE
Q 003142 499 --FDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIA 574 (844)
Q Consensus 499 --~~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~-~~g~t~vIi 574 (844)
...++..++..+.......++|++++ ++..+.+++.+|+||||||||+|||+.....+.. ++..+. +.|.+ ||+
T Consensus 380 ~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~-~l~~l~~~~g~t-vi~ 457 (538)
T 1yqt_A 380 FYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKT-ALV 457 (538)
T ss_dssp HHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHHHTCE-EEE
T ss_pred HHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhCCCE-EEE
Confidence 11233445555555667788898665 5566667899999999999999999988888765 445554 56887 999
Q ss_pred EccchhHH-hhhccccceee
Q 003142 575 TTHHGELK-TLKYSNDFFEN 593 (844)
Q Consensus 575 tTHd~el~-~~a~~~~~v~n 593 (844)
+|||.++. .+|+++..+.+
T Consensus 458 vsHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 458 VEHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp ECSCHHHHHHHCSEEEEEEE
T ss_pred EeCCHHHHHHhCCEEEEEeC
Confidence 99998877 58988877764
No 49
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.69 E-value=7.1e-17 Score=189.96 Aligned_cols=153 Identities=9% Similarity=0.087 Sum_probs=105.2
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccc-ccchh
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA-KVPWF 499 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~-~i~~~ 499 (844)
+.+.++++++ ++|++++|+||||||||||+|+|+++.-. ..| .++|+.... ..++.
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 434 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV-DSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIA 434 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHH
Confidence 6799999999 89999999999999999999999654321 111 122321100 00111
Q ss_pred HHH----------------hhhCCchhhHhh-----------hhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 500 DSV----------------FADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 500 ~~i----------------~~~ig~~q~i~~-----------~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
+++ +...+..+.+.. ....+|+++ ||+..+.+++.+|+++||||||+|+|+.
T Consensus 435 eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~ 514 (582)
T 3b5x_A 435 NNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514 (582)
T ss_pred HHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 111 112222222221 124677765 5566777889999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
....+.. .+..+.+ |.| +|++||+.+....||++..+.+|++...
T Consensus 515 ~~~~i~~-~l~~~~~-~~t-vi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 515 SERAIQA-ALDELQK-NKT-VLVIAHRLSTIEQADEILVVDEGEIIER 559 (582)
T ss_pred HHHHHHH-HHHHHcC-CCE-EEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 7777654 4455544 787 9999999988889999999999998654
No 50
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.69 E-value=5.6e-17 Score=190.89 Aligned_cols=154 Identities=10% Similarity=0.058 Sum_probs=106.0
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccccccccccc-ccchhH
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYA-KVPWFD 500 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~~vpa~~~~-~i~~~~ 500 (844)
+.+.++++++ ++|++++|+||||||||||+|+|+++.-... .-.++|+.... ..++.+
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 435 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVAN 435 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHH
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHH
Confidence 6799999999 8999999999999999999999965431110 01123331100 001112
Q ss_pred HH----------------hhhCCchhhHhh-----------hhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 501 SV----------------FADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 501 ~i----------------~~~ig~~q~i~~-----------~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
++ +...+..+.+.. ....+|+++ ||+..+.+++.+|+++||||||+|+|+..
T Consensus 436 ni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b60_A 436 NIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_dssp HHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 22 122233332222 124577765 55666777899999999999999999977
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
...+.. .+..+.+ |.| +|++||+.+....||++..+.+|++...
T Consensus 516 ~~~i~~-~l~~~~~-~~t-vi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 516 ERAIQA-ALDELQK-NRT-SLVIAHRLSTIEQADEIVVVEDGIIVER 559 (582)
T ss_dssp HHHHHH-HHHHHHT-TSE-EEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred HHHHHH-HHHHHhC-CCE-EEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 777654 4555554 787 9999999988888999999999998654
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.69 E-value=5.6e-17 Score=191.45 Aligned_cols=146 Identities=17% Similarity=0.145 Sum_probs=102.3
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc--------------------------------cccc
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL--------------------------------HILS 490 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~--------------------------------~vpa 490 (844)
+++.+++ . ..|++++|+||||||||||||+|+++.... .|. ++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~-~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q 183 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN-LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ 183 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC-TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECS
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC-CCccccccchhhheeCCEehhhhhhhhhhhhcceEEeec
Confidence 4788887 6 788999999999999999999997543211 111 0010
Q ss_pred cc---c----cc----------cchhHHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 491 SE---Y----AK----------VPWFDSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 491 ~~---~----~~----------i~~~~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
.. . .. ......++..+|..+......+++|++++ ++..+.+++.+|++|||||||+|||+..
T Consensus 184 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~ 263 (607)
T 3bk7_A 184 YVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263 (607)
T ss_dssp CGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH
T ss_pred hhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 00 0 00 00122345556666666777888998765 5556667799999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceee
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 593 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~n 593 (844)
...+. .+++.+.+.|.| ||++|||.++. .+|+++..+.+
T Consensus 264 ~~~l~-~~L~~l~~~g~t-vIivsHdl~~~~~~adri~vl~~ 303 (607)
T 3bk7_A 264 RLKVA-RVIRRLANEGKA-VLVVEHDLAVLDYLSDVIHVVYG 303 (607)
T ss_dssp HHHHH-HHHHHHHHTTCE-EEEECSCHHHHHHHCSEEEEEES
T ss_pred HHHHH-HHHHHHHhcCCE-EEEEecChHHHHhhCCEEEEECC
Confidence 77775 456666667887 99999998876 57887766543
No 52
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.69 E-value=6.3e-17 Score=190.88 Aligned_cols=155 Identities=12% Similarity=0.087 Sum_probs=105.3
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccccccccccc-ccchhH
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYA-KVPWFD 500 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~~vpa~~~~-~i~~~~ 500 (844)
..++++++|+ ++|++++|+||||||||||+|+|+++.-... .-.++|+.... ..++.+
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 436 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAE 436 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHH
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHH
Confidence 4699999999 8999999999999999999999965421100 01123321100 001122
Q ss_pred HH------------------hhhCCchhhHhh-----------hhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCH
Q 003142 501 SV------------------FADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 501 ~i------------------~~~ig~~q~i~~-----------~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp 550 (844)
++ ....+..+.+.. ....+|+++ ||+..+.+++.+|+++||||||+|||+
T Consensus 437 ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~ 516 (595)
T 2yl4_A 437 NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDA 516 (595)
T ss_dssp HHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCH
T ss_pred HHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCH
Confidence 22 112222222211 114677765 556667778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 551 LEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 551 ~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
.....+. ..+..+.+ +.| +|++||+.+....||++..+.+|++...+
T Consensus 517 ~~~~~i~-~~l~~~~~-~~t-vi~itH~~~~~~~~d~i~~l~~G~i~~~g 563 (595)
T 2yl4_A 517 ENEYLVQ-EALDRLMD-GRT-VLVIAHRLSTIKNANMVAVLDQGKITEYG 563 (595)
T ss_dssp HHHHHHH-HHHHHHHT-TSE-EEEECCCHHHHHHSSEEEEEETTEEEEEE
T ss_pred HHHHHHH-HHHHHHhc-CCE-EEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 7766665 45555555 776 99999999888889999999999987543
No 53
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.68 E-value=6.3e-17 Score=191.02 Aligned_cols=155 Identities=12% Similarity=0.081 Sum_probs=105.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccccccccccc-ccchh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYA-KVPWF 499 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~~vpa~~~~-~i~~~ 499 (844)
++.++++++|+ ++|++++|+||||||||||+|+|.++.-... .-.++|+.... ..++.
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~ 446 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVK 446 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHH
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHH
Confidence 45799999999 8999999999999999999999965421110 01123321100 00111
Q ss_pred HHH---------------hhhCCchhhHhh-----------hhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 500 DSV---------------FADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 500 ~~i---------------~~~ig~~q~i~~-----------~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
+++ ....+..+.+.. .-..+|+++ ||+..+.+++.+|+++||||||+|+|+..
T Consensus 447 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~ 526 (598)
T 3qf4_B 447 ENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526 (598)
T ss_dssp HHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHH
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 222 111222222221 124577765 55666777899999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
...+... +..+. .|.| +|++||+.+....||++..+.+|++...
T Consensus 527 ~~~i~~~-l~~~~-~~~t-~i~itH~l~~~~~~d~i~~l~~G~i~~~ 570 (598)
T 3qf4_B 527 EKSIQAA-MWKLM-EGKT-SIIIAHRLNTIKNADLIIVLRDGEIVEM 570 (598)
T ss_dssp HHHHHHH-HHHHH-TTSE-EEEESCCTTHHHHCSEEEEECSSSEEEC
T ss_pred HHHHHHH-HHHHc-CCCE-EEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 7777654 44554 4787 9999999988888999999999998654
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.68 E-value=9.1e-17 Score=189.63 Aligned_cols=146 Identities=17% Similarity=0.101 Sum_probs=100.1
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc--------ccccccccc--ccchh--------------
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG--------LHILSSEYA--KVPWF-------------- 499 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G--------~~vpa~~~~--~i~~~-------------- 499 (844)
.+..+++. ..|++++|+||||||||||||+|+++.... .| .++|+.... ...+.
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~-~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~ 449 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-EGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSN 449 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS-BSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC-ceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHH
Confidence 34444555 678999999999999999999997653221 11 123331110 11111
Q ss_pred ---HHHhhhCCchhhHhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCeEEEE
Q 003142 500 ---DSVFADIGDEQSLSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ESGSLLTIA 574 (844)
Q Consensus 500 ---~~i~~~ig~~q~i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~-~~g~t~vIi 574 (844)
..++..++..+......+++|++++ ++..+.+++.+|+||||||||+|||+.....+.. ++..+. +.|.| ||+
T Consensus 450 ~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~l~~~~g~t-vi~ 527 (607)
T 3bk7_A 450 FYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEKNEKT-ALV 527 (607)
T ss_dssp HHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH-HHHHHHHHTTCE-EEE
T ss_pred HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHH-HHHHHHHhCCCE-EEE
Confidence 1223344555555666778888665 5566667899999999999999999988888765 455554 56887 999
Q ss_pred EccchhHH-hhhccccceee
Q 003142 575 TTHHGELK-TLKYSNDFFEN 593 (844)
Q Consensus 575 tTHd~el~-~~a~~~~~v~n 593 (844)
+|||.++. .+|+++..+.+
T Consensus 528 vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 528 VEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp ECSCHHHHHHHCSEEEEEEE
T ss_pred EeCCHHHHHHhCCEEEEEcC
Confidence 99998877 48888877754
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.68 E-value=8e-17 Score=187.68 Aligned_cols=143 Identities=15% Similarity=0.081 Sum_probs=97.1
Q ss_pred eeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccc-----------------c-----------------ccc
Q 003142 446 PIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH-----------------I-----------------LSS 491 (844)
Q Consensus 446 ~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~-----------------v-----------------pa~ 491 (844)
+-++.+..+|++++|+||||||||||||+|+++.... .|.. + +.
T Consensus 16 l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~-~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~- 93 (538)
T 3ozx_A 16 LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPN-FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQ- 93 (538)
T ss_dssp EECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC-TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECS-
T ss_pred ecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccc-
Confidence 3333334789999999999999999999997642111 1110 0 00
Q ss_pred ccccc------------------chhHHHhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCCCCHHH
Q 003142 492 EYAKV------------------PWFDSVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAGTNPLE 552 (844)
Q Consensus 492 ~~~~i------------------~~~~~i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sGlDp~~ 552 (844)
..... .....++..++.........+++|+++++ +..+.+++.+|++|||||||+|||+..
T Consensus 94 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~ 173 (538)
T 3ozx_A 94 YVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRE 173 (538)
T ss_dssp CTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred hhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 00000 01223455566666667778889987655 555567789999999999999999988
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhccccceee
Q 003142 553 GTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFEN 593 (844)
Q Consensus 553 ~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~n 593 (844)
...+. .+++.+.+ |.| ||++|||.++. .+|+++..+.+
T Consensus 174 ~~~l~-~~l~~l~~-g~t-ii~vsHdl~~~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 174 RMNMA-KAIRELLK-NKY-VIVVDHDLIVLDYLTDLIHIIYG 212 (538)
T ss_dssp HHHHH-HHHHHHCT-TSE-EEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHH-HHHHHHhC-CCE-EEEEEeChHHHHhhCCEEEEecC
Confidence 87775 56666655 887 99999998776 46776655543
No 56
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.68 E-value=6.7e-17 Score=190.07 Aligned_cols=157 Identities=12% Similarity=0.098 Sum_probs=105.8
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccccccccccc-ccch
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYA-KVPW 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~~vpa~~~~-~i~~ 498 (844)
++..++++++|+ ++|++++|+||||||||||+|+|.++.-... .-.++|+.... .-++
T Consensus 352 ~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv 431 (578)
T 4a82_A 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTV 431 (578)
T ss_dssp SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBH
T ss_pred CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccH
Confidence 346799999999 8999999999999999999999965421110 01123331100 0011
Q ss_pred hHHHh---------------hhCCchhhHh-----------hhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 499 FDSVF---------------ADIGDEQSLS-----------QSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 499 ~~~i~---------------~~ig~~q~i~-----------~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
.+++. ...+..+.+. .....+||++ ||+..+.+++.+|+++||||||+|+|+.
T Consensus 432 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~ 511 (578)
T 4a82_A 432 KENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511 (578)
T ss_dssp HHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 22221 1122222221 1224577765 5566667789999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
....+. ..+..+. .+.| +|++||+.+....||++..+.+|++...+
T Consensus 512 ~~~~i~-~~l~~~~-~~~t-~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 512 SESIIQ-EALDVLS-KDRT-TLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp HHHHHH-HHHHHHT-TTSE-EEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred HHHHHH-HHHHHHc-CCCE-EEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 666554 4555553 4676 89999999888889999999999997654
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.67 E-value=6e-17 Score=191.00 Aligned_cols=145 Identities=16% Similarity=0.078 Sum_probs=98.4
Q ss_pred ceeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccc------------c----------------------cc
Q 003142 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLH------------I----------------------LS 490 (844)
Q Consensus 445 V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~------------v----------------------pa 490 (844)
+...+..-.+|++++|+||||||||||||+|+++.... .|.. + |.
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~-~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 171 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPN-LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQ 171 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC-TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECC
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCC-CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchh
Confidence 33333333689999999999999999999997543211 1111 0 00
Q ss_pred cc-------cc---cc------------chhHHHhhhCCchhhHhhhhhhhhHHhhH-HHHHHHhCCCCcEEEEecCCCC
Q 003142 491 SE-------YA---KV------------PWFDSVFADIGDEQSLSQSLSTFSGHLKQ-IGNIISQSTSQSLVLLDEIGAG 547 (844)
Q Consensus 491 ~~-------~~---~i------------~~~~~i~~~ig~~q~i~~~lstfS~~~~r-l~~il~~a~~p~LLLLDEP~sG 547 (844)
.. .. .+ .....++..++.........+++|+++++ +..+.+++.+|++|||||||+|
T Consensus 172 ~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~ 251 (608)
T 3j16_B 172 YVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSY 251 (608)
T ss_dssp CTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTT
T ss_pred hhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccC
Confidence 00 00 00 01223445556666666777888987655 5555677899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH-hhhcccccee
Q 003142 548 TNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK-TLKYSNDFFE 592 (844)
Q Consensus 548 lDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~-~~a~~~~~v~ 592 (844)
||+.....+. .+++.+.+.|.| ||++||+.++. .+|+++..+.
T Consensus 252 LD~~~~~~l~-~~l~~l~~~g~t-vi~vtHdl~~~~~~~drv~vl~ 295 (608)
T 3j16_B 252 LDVKQRLNAA-QIIRSLLAPTKY-VICVEHDLSVLDYLSDFVCIIY 295 (608)
T ss_dssp CCHHHHHHHH-HHHHGGGTTTCE-EEEECSCHHHHHHHCSEEEEEE
T ss_pred CCHHHHHHHH-HHHHHHHhCCCE-EEEEeCCHHHHHHhCCEEEEEe
Confidence 9998877775 566677777887 99999998776 5787776664
No 58
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.67 E-value=6.2e-17 Score=190.72 Aligned_cols=157 Identities=10% Similarity=0.086 Sum_probs=106.7
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccccccccccc-ccch
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYA-KVPW 498 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~~vpa~~~~-~i~~ 498 (844)
+++.++++++|+ ++|++++|+||||||||||+|+|.++.-... .-.++|+.... .-++
T Consensus 354 ~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv 433 (587)
T 3qf4_A 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTI 433 (587)
T ss_dssp SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEH
T ss_pred CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccH
Confidence 456799999999 8999999999999999999999965421110 01123331100 0011
Q ss_pred hHHHh---------------hhCCchhhH-----------hhhhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 499 FDSVF---------------ADIGDEQSL-----------SQSLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 499 ~~~i~---------------~~ig~~q~i-----------~~~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
.+++. ...+..+.+ ......+|+++ ||+..+.+++.+|+++||||||+|+|+.
T Consensus 434 ~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~ 513 (587)
T 3qf4_A 434 KENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI 513 (587)
T ss_dssp HHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHH
T ss_pred HHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 12221 111111111 11224567755 5667777889999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
....+... +..+ ..|.| +|++||+.+....||++..+.+|++...+
T Consensus 514 ~~~~i~~~-l~~~-~~~~t-vi~itH~l~~~~~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 514 TEKRILDG-LKRY-TKGCT-TFIITQKIPTALLADKILVLHEGKVAGFG 559 (587)
T ss_dssp HHHHHHHH-HHHH-STTCE-EEEEESCHHHHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHH-HHHh-CCCCE-EEEEecChHHHHhCCEEEEEECCEEEEEC
Confidence 77777654 4444 35787 99999999988899999999999987543
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.65 E-value=2.5e-16 Score=188.28 Aligned_cols=86 Identities=16% Similarity=0.119 Sum_probs=67.6
Q ss_pred hhhhhhhhHHhhH-HHHHHHhCCC---CcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003142 513 SQSLSTFSGHLKQ-IGNIISQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588 (844)
Q Consensus 513 ~~~lstfS~~~~r-l~~il~~a~~---p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~ 588 (844)
.....++|+++++ +..+.+++.+ |+||||||||+||||.....+. .++..+.+.|.| ||+||||+++..+|+++
T Consensus 538 ~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~-~~l~~l~~~g~t-vi~vtHd~~~~~~~d~i 615 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDT-VLVIEHNLDVIKTADYI 615 (670)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECCCHHHHTTCSEE
T ss_pred cCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCE-EEEEeCCHHHHHhCCEE
Confidence 3455778887755 4555556555 4699999999999998888876 566667777887 99999999988889998
Q ss_pred cce------eeeEEEEec
Q 003142 589 DFF------ENACMEFDE 600 (844)
Q Consensus 589 ~~v------~ng~v~fd~ 600 (844)
..+ .+|.+.+++
T Consensus 616 ~~l~~~~g~~~G~i~~~g 633 (670)
T 3ux8_A 616 IDLGPEGGDRGGQIVAVG 633 (670)
T ss_dssp EEEESSSGGGCCEEEEEE
T ss_pred EEecCCcCCCCCEEEEec
Confidence 888 789887654
No 60
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.64 E-value=4.7e-17 Score=161.58 Aligned_cols=131 Identities=11% Similarity=0.066 Sum_probs=76.7
Q ss_pred EEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHh----hccccccccccccccchhHHHh----------hhCCchhhH
Q 003142 448 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMM----AKSGLHILSSEYAKVPWFDSVF----------ADIGDEQSL 512 (844)
Q Consensus 448 disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~----~q~G~~vpa~~~~~i~~~~~i~----------~~ig~~q~i 512 (844)
+++|+ ..|++++|+||||||||||+|++...... ...|. ++...+ ...+....+ ...|... +
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 77 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGL-MSDDEN-DQTVTGAAFDVLHYIVSKRLQLGKLT-V 77 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHH-HCSSTT-CGGGHHHHHHHHHHHHHHHHHTTCCE-E
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHH-hcCccc-chhhHHHHHHHHHHHHHHHHhCCCeE-E
Confidence 35666 67899999999999999999964210000 00111 111011 111111111 1111110 0
Q ss_pred hhhhhhhhHH-hhHHHHHHHhCCCCcEEEEecCCCCCCHH----------------HHHHHHHHHHHHHHhcCCeEEEEE
Q 003142 513 SQSLSTFSGH-LKQIGNIISQSTSQSLVLLDEIGAGTNPL----------------EGTALGMSLLEAFAESGSLLTIAT 575 (844)
Q Consensus 513 ~~~lstfS~~-~~rl~~il~~a~~p~LLLLDEP~sGlDp~----------------~~~al~~~Ile~L~~~g~t~vIit 575 (844)
.......+++ .+++..+.+++.+|.+|+|||||+|+|+. ....+ ..++..+.+.|.+ +|++
T Consensus 78 ~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l-~~~l~~l~~~g~t-vi~v 155 (171)
T 4gp7_A 78 VDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQM-KKSIKGLQREGFR-YVYI 155 (171)
T ss_dssp EESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHH-HHHSTTHHHHTCS-EEEE
T ss_pred EECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHh-hhhhhhHHhcCCc-EEEE
Confidence 0111122444 45566666788999999999999999997 33444 3455556667887 9999
Q ss_pred ccchhHHh
Q 003142 576 THHGELKT 583 (844)
Q Consensus 576 THd~el~~ 583 (844)
|||.+...
T Consensus 156 tH~~~~~~ 163 (171)
T 4gp7_A 156 LNSPEEVE 163 (171)
T ss_dssp ECSHHHHH
T ss_pred eCCHHHhh
Confidence 99988774
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.63 E-value=1.6e-16 Score=194.56 Aligned_cols=91 Identities=20% Similarity=0.111 Sum_probs=68.0
Q ss_pred hhhCCchhh--HhhhhhhhhHHhh-HHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003142 503 FADIGDEQS--LSQSLSTFSGHLK-QIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 503 ~~~ig~~q~--i~~~lstfS~~~~-rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~ 579 (844)
+..+|.... .....+++||+++ ++..+.+++.+|+||||||||+|||+.....+ .+.+.+.+.+ ||++|||.
T Consensus 884 Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L----~~~L~~~g~t-VIiISHD~ 958 (986)
T 2iw3_A 884 CSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL----SKALKEFEGG-VIIITHSA 958 (986)
T ss_dssp HHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHH----HHHHHSCSSE-EEEECSCH
T ss_pred HHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHH----HHHHHHhCCE-EEEEECCH
Confidence 344555432 3455678888665 55666678999999999999999999665544 4455566776 99999998
Q ss_pred hHH-hhhccccceeeeEEEE
Q 003142 580 ELK-TLKYSNDFFENACMEF 598 (844)
Q Consensus 580 el~-~~a~~~~~v~ng~v~f 598 (844)
++. .+|+++..+.+|.+..
T Consensus 959 e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 959 EFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp HHHTTTCCEEECCBTTBCCC
T ss_pred HHHHHhCCEEEEEECCEEEE
Confidence 887 5899999998887753
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.57 E-value=3.3e-15 Score=167.69 Aligned_cols=109 Identities=21% Similarity=0.212 Sum_probs=75.4
Q ss_pred hhHHh-hHHHHHHHhCCCC--cEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce----
Q 003142 519 FSGHL-KQIGNIISQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF---- 591 (844)
Q Consensus 519 fS~~~-~rl~~il~~a~~p--~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v---- 591 (844)
+|+++ +++..++.++.+| ++|||||||+|||+.....+.. ++..+. +|++ ||+|||+.++..+|+++..+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~-~L~~l~-~~~~-vi~itH~~~~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAE-QLSRLA-DTRQ-VLVVTHLAQIAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHH-HHHHHT-TTSE-EEEECSCHHHHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHh-CCCE-EEEEeCcHHHHhhcCeEEEEEEec
Confidence 47755 5566666677888 9999999999999988777764 455555 5787 99999999999899988888
Q ss_pred eeeEEEEecccceeeEEeecCCCCCchHHHHHHHc-C-CCHHHHHHHHHHH
Q 003142 592 ENACMEFDEVKLKPTYKILWGVPGRSSAINIAERL-G-LPGIVVQNARQLY 640 (844)
Q Consensus 592 ~ng~v~fd~~~l~p~y~l~~G~~g~S~a~~iA~~~-g-l~~~ii~~A~~~l 640 (844)
.+|.+......+ .....-.+||+.+ | +.+..+..|++++
T Consensus 373 ~~G~~~~~~~~l----------~~~~~~~ei~~~~~g~~~~~~~~~a~~~~ 413 (415)
T 4aby_A 373 EDGRTVSHVRLL----------TGDERLEEIARMLSGNTSEAALEHARELL 413 (415)
T ss_dssp ETTEEEEEEEEC----------CSHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred cCCceEEEEEEC----------CchhhHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 666654332111 1112234566655 3 4566666776654
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.57 E-value=8.4e-15 Score=177.70 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=67.9
Q ss_pred hhhhhhhhHHhhH-HHHHHHhCCC---CcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003142 513 SQSLSTFSGHLKQ-IGNIISQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588 (844)
Q Consensus 513 ~~~lstfS~~~~r-l~~il~~a~~---p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~ 588 (844)
.+...++|+++++ +..+.+++.+ |+|+||||||+|||+.....+. .++..+.+.|.| ||++|||+++..+|+++
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~t-VIvisHdl~~i~~aDri 802 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQ-RQLVKLVDAGNT-VIAVEHKMQVVAASDWV 802 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECCCHHHHTTCSEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE-EEEEcCCHHHHHhCCEE
Confidence 4556778886655 5555556664 7999999999999998888875 566778888997 99999999888889998
Q ss_pred cce------eeeEEEEec
Q 003142 589 DFF------ENACMEFDE 600 (844)
Q Consensus 589 ~~v------~ng~v~fd~ 600 (844)
..+ .+|.+.+..
T Consensus 803 i~L~p~~g~~~G~Iv~~g 820 (842)
T 2vf7_A 803 LDIGPGAGEDGGRLVAQG 820 (842)
T ss_dssp EEECSSSGGGCCSEEEEE
T ss_pred EEECCCCCCCCCEEEEEc
Confidence 888 578887643
No 64
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.56 E-value=2.4e-15 Score=167.36 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=64.4
Q ss_pred hhhhhhHHhhHH-HHHHHhC------CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003142 515 SLSTFSGHLKQI-GNIISQS------TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587 (844)
Q Consensus 515 ~lstfS~~~~rl-~~il~~a------~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~ 587 (844)
..+++|+++++. ..+++++ .+|+++||||||+||||.....+. .++..+.+.|.| ||++||+.++..+|++
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~-~~l~~l~~~g~t-vi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIA-SVLKELERLNKV-IVFITHDREFSEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHH-HHHHGGGGSSSE-EEEEESCHHHHTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHhCCCE-EEEEecchHHHHhCCE
Confidence 345688876554 4444444 699999999999999998877775 566667777887 9999999999889999
Q ss_pred ccceeeeEEE
Q 003142 588 NDFFENACME 597 (844)
Q Consensus 588 ~~~v~ng~v~ 597 (844)
+..+.+|.+.
T Consensus 354 ~~~l~~G~i~ 363 (365)
T 3qf7_A 354 KLRITGGVVV 363 (365)
T ss_dssp EEEEETTEEC
T ss_pred EEEEECCEEE
Confidence 9888888874
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.54 E-value=2.4e-14 Score=174.97 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=68.0
Q ss_pred HhhhhhhhhHHhh-HHHHHHHhCCC---CcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003142 512 LSQSLSTFSGHLK-QIGNIISQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587 (844)
Q Consensus 512 i~~~lstfS~~~~-rl~~il~~a~~---p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~ 587 (844)
+.+...++|++++ ++..+.+++.+ |+|+||||||+|||+.....+. .++..+.+.|.| ||++|||+++..+|++
T Consensus 857 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~T-VIvisHdl~~i~~aDr 934 (993)
T 2ygr_A 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLL-NVINGLVDKGNT-VIVIEHNLDVIKTSDW 934 (993)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECCCHHHHTTCSE
T ss_pred ccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE-EEEEcCCHHHHHhCCE
Confidence 3455677888665 55555666654 5999999999999998888876 556677778887 9999999998888998
Q ss_pred ccce------eeeEEEEec
Q 003142 588 NDFF------ENACMEFDE 600 (844)
Q Consensus 588 ~~~v------~ng~v~fd~ 600 (844)
+..+ .+|.+.++.
T Consensus 935 IivL~p~gg~~~G~Iv~~G 953 (993)
T 2ygr_A 935 IIDLGPEGGAGGGTVVAQG 953 (993)
T ss_dssp EEEEESSSTTSCSEEEEEE
T ss_pred EEEECCCcCCCCCEEEEec
Confidence 8888 578887643
No 66
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.52 E-value=2.5e-14 Score=174.26 Aligned_cols=86 Identities=16% Similarity=0.133 Sum_probs=67.0
Q ss_pred HhhhhhhhhHHhh-HHHHHHHhCCC---CcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003142 512 LSQSLSTFSGHLK-QIGNIISQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587 (844)
Q Consensus 512 i~~~lstfS~~~~-rl~~il~~a~~---p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~ 587 (844)
+.+...++|++++ ++..+.+++.+ |+|+||||||+|||+.....+. .++..+.+.|.| ||++|||+++..+|++
T Consensus 839 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~-~lL~~L~~~G~T-VIvisHdl~~i~~aDr 916 (972)
T 2r6f_A 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL-DVLHRLVDNGDT-VLVIEHNLDVIKTADY 916 (972)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECCCHHHHTTCSE
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhCCCE-EEEEcCCHHHHHhCCE
Confidence 3455677888665 55555666654 5999999999999998888876 556677888987 9999999998888888
Q ss_pred ccce------eeeEEEEe
Q 003142 588 NDFF------ENACMEFD 599 (844)
Q Consensus 588 ~~~v------~ng~v~fd 599 (844)
+..+ .+|.+.++
T Consensus 917 IivL~p~gG~~~G~Iv~~ 934 (972)
T 2r6f_A 917 IIDLGPEGGDRGGQIVAV 934 (972)
T ss_dssp EEEECSSSTTSCCSEEEE
T ss_pred EEEEcCCCCCCCCEEEEe
Confidence 8888 57777654
No 67
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.52 E-value=1.9e-14 Score=175.91 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=67.8
Q ss_pred hhhhhhhHHhhH-HHHHHHhCCC---CcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003142 514 QSLSTFSGHLKQ-IGNIISQSTS---QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589 (844)
Q Consensus 514 ~~lstfS~~~~r-l~~il~~a~~---p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~ 589 (844)
+..+++||++++ +..+.+++.+ |+|+||||||+|||+.+...+. .++..+.+.|.| ||++|||+++...||++.
T Consensus 801 q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~-~lL~~L~~~G~T-VIvI~HdL~~i~~ADrIi 878 (916)
T 3pih_A 801 QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLV-EVLHRLVDRGNT-VIVIEHNLDVIKNADHII 878 (916)
T ss_dssp CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECCCHHHHTTCSEEE
T ss_pred CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHhcCCE-EEEEeCCHHHHHhCCEEE
Confidence 445678886654 5555566544 5899999999999998888775 566778888997 999999999988899998
Q ss_pred ce------eeeEEEEec
Q 003142 590 FF------ENACMEFDE 600 (844)
Q Consensus 590 ~v------~ng~v~fd~ 600 (844)
.+ .+|.+.+.+
T Consensus 879 vLgp~gg~~~G~Iv~~G 895 (916)
T 3pih_A 879 DLGPEGGKEGGYIVATG 895 (916)
T ss_dssp EEESSSGGGCCEEEEEE
T ss_pred EecCCCCCCCCEEEEEc
Confidence 88 788888764
No 68
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.51 E-value=1.8e-14 Score=183.37 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=102.8
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------cccccccccccc-ccchhH
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSGLHILSSEYA-KVPWFD 500 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~G~~vpa~~~~-~i~~~~ 500 (844)
..++++++|. .+|++++|+||||||||||+++|.++.-.. +.-.++|+.... ..++.+
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 1125 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHH
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHH
Confidence 3689999999 899999999999999999999996542111 001133331100 001111
Q ss_pred HH-----------------hhhCCchhhHhh-----------hhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 501 SV-----------------FADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 501 ~i-----------------~~~ig~~q~i~~-----------~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
++ ....+..+.+.. .-..+||++ |++..+.+++.+|++|||||||+|+|+.
T Consensus 1126 Ni~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~ 1205 (1284)
T 3g5u_A 1126 NIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205 (1284)
T ss_dssp HHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHH
T ss_pred HHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 11 111111111111 113577755 5566667788999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
....+.. .++.+ ..|+| +|++||+.+....||++..+.+|++...
T Consensus 1206 ~~~~i~~-~l~~~-~~~~t-vi~isH~l~~i~~~dri~vl~~G~i~~~ 1250 (1284)
T 3g5u_A 1206 SEKVVQE-ALDKA-REGRT-CIVIAHRLSTIQNADLIVVIQNGKVKEH 1250 (1284)
T ss_dssp HHHHHHH-HHHHH-SSSSC-EEEECSCTTGGGSCSEEEEEETBEEEEE
T ss_pred HHHHHHH-HHHHh-CCCCE-EEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 6666654 44443 45787 9999999988888999999999998754
No 69
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.50 E-value=2.6e-14 Score=181.82 Aligned_cols=153 Identities=10% Similarity=0.063 Sum_probs=101.9
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhc--------------------ccccccccccc-ccchhH
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAK--------------------SGLHILSSEYA-KVPWFD 500 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q--------------------~G~~vpa~~~~-~i~~~~ 500 (844)
.+|+++++|. ++|++++|+||||||||||+++|.++.-... .-.++|+.... .-++.+
T Consensus 403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~e 482 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAE 482 (1284)
T ss_dssp CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHH
T ss_pred CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHH
Confidence 4799999999 8999999999999999999999964321100 01123331100 001112
Q ss_pred HHh---------------hhCCchhhHhh-----------hhhhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHHHH
Q 003142 501 SVF---------------ADIGDEQSLSQ-----------SLSTFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPLEG 553 (844)
Q Consensus 501 ~i~---------------~~ig~~q~i~~-----------~lstfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~~~ 553 (844)
++. ...+..+.+.. .-..+||++ ||+..+.+++.+|++|||||||++||+...
T Consensus 483 Ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~ 562 (1284)
T 3g5u_A 483 NIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562 (1284)
T ss_dssp HHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHH
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 221 11122222211 123577765 556666778899999999999999999655
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEE
Q 003142 554 TALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 554 ~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~f 598 (844)
..+ ...++.+. .|+| +|++||+......||++..+.+|++..
T Consensus 563 ~~i-~~~l~~~~-~~~t-~i~itH~l~~i~~~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 563 AVV-QAALDKAR-EGRT-TIVIAHRLSTVRNADVIAGFDGGVIVE 604 (1284)
T ss_dssp HHH-HHHHHHHH-TTSE-EEEECSCHHHHTTCSEEEECSSSCCCC
T ss_pred HHH-HHHHHHHc-CCCE-EEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 544 44555443 5787 999999998888899999999998854
No 70
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.44 E-value=5.6e-14 Score=141.00 Aligned_cols=126 Identities=11% Similarity=0.030 Sum_probs=73.4
Q ss_pred EEEEEccCCCCchhhHhhhhhHHHhhccccccccc----cccccchh-------HHHhhhCCch--hhHhhhhhhhhHHh
Q 003142 457 VLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS----EYAKVPWF-------DSVFADIGDE--QSLSQSLSTFSGHL 523 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~----~~~~i~~~-------~~i~~~ig~~--q~i~~~lstfS~~~ 523 (844)
.++|+||||||||||||+|++..-..-.|...... ....+++. ..++..++.. .........+|+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 47999999999999999997664322223221100 01111211 0111111111 12334455688877
Q ss_pred hHHHH-HHH-----hCCCCcEEEEec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEcc---chhHH-hhhcc
Q 003142 524 KQIGN-IIS-----QSTSQSLVLLDE--IGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH---HGELK-TLKYS 587 (844)
Q Consensus 524 ~rl~~-il~-----~a~~p~LLLLDE--P~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTH---d~el~-~~a~~ 587 (844)
++... +.+ ++.+|+++|||| |++++|+.....+ .+.+.+.+.+ +|++|| +..+. .++++
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l----~~~l~~~~~~-~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV----RQIMHDPNVN-VVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH----HHHHTCTTSE-EEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH----HHHHhcCCCe-EEEEEccCCCchHHHHHHhc
Confidence 65544 443 689999999999 9999999655444 3444445665 677775 66665 45655
No 71
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.44 E-value=2.7e-13 Score=172.99 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=104.3
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---------------------ccccccccc-ccch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---------------------LHILSSEYA-KVPW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---------------------~~vpa~~~~-~i~~ 498 (844)
+.+|++|++|. ++|+.++|+||+|||||||+++|.+..-. ..| .++|+...- .-++
T Consensus 430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~-~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI 508 (1321)
T 4f4c_A 430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV-LKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTI 508 (1321)
T ss_dssp TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC-SEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEH
T ss_pred CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc-ccCcccCCCccchhccHHHHhhcccccCCcceeeCCch
Confidence 56899999999 99999999999999999999999543211 111 123321100 0011
Q ss_pred hHHH---------------hhhCCchhhHhhh---h--------hhhhH-HhhHHHHHHHhCCCCcEEEEecCCCCCCHH
Q 003142 499 FDSV---------------FADIGDEQSLSQS---L--------STFSG-HLKQIGNIISQSTSQSLVLLDEIGAGTNPL 551 (844)
Q Consensus 499 ~~~i---------------~~~ig~~q~i~~~---l--------stfS~-~~~rl~~il~~a~~p~LLLLDEP~sGlDp~ 551 (844)
.+++ ....+..+.+... . ..+|| +.||+..+.++..+|+++|||||||++|+.
T Consensus 509 ~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~ 588 (1321)
T 4f4c_A 509 EENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE 588 (1321)
T ss_dssp HHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTT
T ss_pred hHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHH
Confidence 1222 1112222233221 1 24566 456778888889999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 552 EGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 552 ~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
....+.. .+..+. +|.| +|++||.......||++..+.+|++...
T Consensus 589 te~~i~~-~l~~~~-~~~T-~iiiaHrls~i~~aD~Iivl~~G~ive~ 633 (1321)
T 4f4c_A 589 SEGIVQQ-ALDKAA-KGRT-TIIIAHRLSTIRNADLIISCKNGQVVEV 633 (1321)
T ss_dssp THHHHHH-HHHHHH-TTSE-EEEECSCTTTTTTCSEEEEEETTEEEEE
T ss_pred HHHHHHH-HHHHHh-CCCE-EEEEcccHHHHHhCCEEEEeeCCeeecc
Confidence 6554444 444443 4777 8999999999999999999999999754
No 72
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.43 E-value=2.4e-14 Score=147.29 Aligned_cols=121 Identities=12% Similarity=0.163 Sum_probs=68.1
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccc------c-ccccccchhHH-----H-------hhhCC---chh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHIL------S-SEYAKVPWFDS-----V-------FADIG---DEQ 510 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vp------a-~~~~~i~~~~~-----i-------~~~ig---~~q 510 (844)
..|++++|+||||||||||||+|+++ .. ..|.... . .....++++.+ + +..+. ..+
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p-~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~ 97 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL-QSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPE 97 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HH-HTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CC-cCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHH
Confidence 56789999999999999999999887 33 2332210 0 00011222111 1 00000 011
Q ss_pred hHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHh
Q 003142 511 SLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKT 583 (844)
Q Consensus 511 ~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~ 583 (844)
.+...+..--|+.+++..+.+++.+|++|||||||+| ....+. .++..+ ..|.+ || +|||.++..
T Consensus 98 ~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~-~~l~~l-~~g~t-ii-vtHd~~~~~ 162 (208)
T 3b85_A 98 VIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMK-MFLTRL-GFGSK-MV-VTGDITQVD 162 (208)
T ss_dssp HHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHH-HHHTTB-CTTCE-EE-EEEC-----
T ss_pred HHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHH-HHHHHh-cCCCE-EE-EECCHHHHh
Confidence 1111111101556777777888999999999999999 334443 444445 55776 88 999987764
No 73
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.41 E-value=4.5e-13 Score=146.17 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=56.4
Q ss_pred hhhhhHHhhHHHHHHH-hC----CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc--
Q 003142 516 LSTFSGHLKQIGNIIS-QS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN-- 588 (844)
Q Consensus 516 lstfS~~~~rl~~il~-~a----~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~-- 588 (844)
.+.+|+++++...++. ++ .+|++|||||||++|||.....+.. ++..+. .|.+ +|+|||+.++..+|+..
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~-~~~~-vi~~tH~~~~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKR-LLKENS-KHTQ-FIVITHNKIVMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHH-HHHHHT-TTSE-EEEECCCTTGGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhc-CCCe-EEEEECCHHHHhhCceEEE
Confidence 4567887766555543 33 6889999999999999988777764 555553 4776 99999998877888865
Q ss_pred cceeeeEE
Q 003142 589 DFFENACM 596 (844)
Q Consensus 589 ~~v~ng~v 596 (844)
+.+.+|.-
T Consensus 294 v~~~~g~s 301 (322)
T 1e69_A 294 VTMVNGVS 301 (322)
T ss_dssp EEESSSCE
T ss_pred EEEeCCEE
Confidence 44445443
No 74
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.41 E-value=6.9e-13 Score=145.82 Aligned_cols=74 Identities=20% Similarity=0.158 Sum_probs=57.1
Q ss_pred hhhhhHHhhH-------HHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003142 516 LSTFSGHLKQ-------IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588 (844)
Q Consensus 516 lstfS~~~~r-------l~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~ 588 (844)
+..+|+++++ +..+.+++.+|++|||||||+||||.....+.. ++..+...|.+ ||++||+.++..+|+++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~-vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQ-VILVSHDEELKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHH-HHHHTGGGSSE-EEEEESCGGGGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHhcCCE-EEEEEChHHHHHhCCEE
Confidence 4567887765 344445678999999999999999987777764 55556666776 99999998888888777
Q ss_pred cce
Q 003142 589 DFF 591 (844)
Q Consensus 589 ~~v 591 (844)
..+
T Consensus 324 ~~l 326 (339)
T 3qkt_A 324 IRI 326 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 75
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.39 E-value=6.1e-13 Score=137.66 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=43.7
Q ss_pred CCCCcEEEEecCCCCCC----HHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH----------hhh-cccccee
Q 003142 533 STSQSLVLLDEIGAGTN----PLEGTALGMSLLEAFAESGSLLTIATTHHGELK----------TLK-YSNDFFE 592 (844)
Q Consensus 533 a~~p~LLLLDEP~sGlD----p~~~~al~~~Ile~L~~~g~t~vIitTHd~el~----------~~a-~~~~~v~ 592 (844)
..+|++|+||||++++| +.........++..+++.|+| ||++||+.... .+| +++..+.
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~t-ii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVT-TILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCE-EEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCe-EEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 46899999999999986 345555456788888888997 99999997664 566 7666654
No 76
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.38 E-value=5.9e-13 Score=169.87 Aligned_cols=154 Identities=11% Similarity=0.091 Sum_probs=101.6
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhh--------------------cccccccccccccc--ch
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMA--------------------KSGLHILSSEYAKV--PW 498 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~--------------------q~G~~vpa~~~~~i--~~ 498 (844)
+.+|++|++|. ++|+.++|+||+|||||||+++|..+.-.. +.-.++|+.. .-+ ++
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp-~LF~gTI 1169 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEP-TLFDCSI 1169 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSC-CCCSEEH
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCC-EeeCccH
Confidence 44799999999 899999999999999999999995432110 0011334311 100 01
Q ss_pred hHHH-----------------hhhCCchhhHhh---hh--------hhhhHHh-hHHHHHHHhCCCCcEEEEecCCCCCC
Q 003142 499 FDSV-----------------FADIGDEQSLSQ---SL--------STFSGHL-KQIGNIISQSTSQSLVLLDEIGAGTN 549 (844)
Q Consensus 499 ~~~i-----------------~~~ig~~q~i~~---~l--------stfS~~~-~rl~~il~~a~~p~LLLLDEP~sGlD 549 (844)
-+++ ....+..+.+.. ++ ..+|+++ |++..+.+++.+|++||||||||++|
T Consensus 1170 reNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD 1249 (1321)
T 4f4c_A 1170 AENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD 1249 (1321)
T ss_dssp HHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTT
T ss_pred HHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCC
Confidence 1111 112222222221 11 3467654 66777778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeEEEEe
Q 003142 550 PLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENACMEFD 599 (844)
Q Consensus 550 p~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~v~fd 599 (844)
+..-..+. ..++.+ -+++| +|+++|...-...||++..+.+|++...
T Consensus 1250 ~~tE~~Iq-~~l~~~-~~~~T-vI~IAHRLsTi~~aD~I~Vld~G~IvE~ 1296 (1321)
T 4f4c_A 1250 TESEKVVQ-EALDRA-REGRT-CIVIAHRLNTVMNADCIAVVSNGTIIEK 1296 (1321)
T ss_dssp SHHHHHHH-HHHTTT-SSSSE-EEEECSSSSTTTTCSEEEEESSSSEEEE
T ss_pred HHHHHHHH-HHHHHH-cCCCE-EEEeccCHHHHHhCCEEEEEECCEEEEE
Confidence 95544433 333322 24777 9999999988889999999999998643
No 77
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.36 E-value=4.8e-14 Score=161.33 Aligned_cols=131 Identities=12% Similarity=0.055 Sum_probs=82.1
Q ss_pred EEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc-c-------------ccccccc-----cccchhHHH-----
Q 003142 448 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG-L-------------HILSSEY-----AKVPWFDSV----- 502 (844)
Q Consensus 448 disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G-~-------------~vpa~~~-----~~i~~~~~i----- 502 (844)
++++. ..|++++|+||||||||||+|+|+++.... .| . ++|+... ..+...+.+
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~-~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~ 208 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF-NAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSL 208 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH-HCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc-CCceeEEEcCCccCCeeeeccchhhcccccccchhhhhccccc
Confidence 45555 678999999999999999999997664322 22 1 2222110 000111111
Q ss_pred -------------hhhCCchhhHhhhhhhhhHHh-hHHHHHHH--hCCCCcE----EEEec-CCCCCCHHHHHHHHHHHH
Q 003142 503 -------------FADIGDEQSLSQSLSTFSGHL-KQIGNIIS--QSTSQSL----VLLDE-IGAGTNPLEGTALGMSLL 561 (844)
Q Consensus 503 -------------~~~ig~~q~i~~~lstfS~~~-~rl~~il~--~a~~p~L----LLLDE-P~sGlDp~~~~al~~~Il 561 (844)
+..+|...... ...+|+++ +++..+.+ ++.+|++ ||||| ||+|+|+. . ..+.
T Consensus 209 ~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~--~---~~l~ 281 (460)
T 2npi_A 209 TSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN--L---AELH 281 (460)
T ss_dssp BSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS--C---HHHH
T ss_pred ccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh--H---HHHH
Confidence 11223322222 45677655 56677777 8899999 99999 99999996 2 2333
Q ss_pred HHHHhcCCeEEEEEccchh------HH-hhhcc
Q 003142 562 EAFAESGSLLTIATTHHGE------LK-TLKYS 587 (844)
Q Consensus 562 e~L~~~g~t~vIitTHd~e------l~-~~a~~ 587 (844)
+.+.+.+.+ +|++||+.. +. .+|++
T Consensus 282 ~l~~~~~~t-viiVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 282 HIIEKLNVN-IMLVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp HHHHHTTCC-EEEEECCSSCTHHHHHHHHHHHH
T ss_pred HHHHHhCCC-EEEEEccCchhhhHHHHHHhccc
Confidence 444455787 899999876 33 57877
No 78
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.29 E-value=1.9e-12 Score=132.33 Aligned_cols=140 Identities=12% Similarity=0.101 Sum_probs=74.7
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhc-cc------cccccccccccchhHHHhhhCCch-hhHhhhhh---hhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-SG------LHILSSEYAKVPWFDSVFADIGDE-QSLSQSLS---TFSG 521 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-~G------~~vpa~~~~~i~~~~~i~~~ig~~-q~i~~~ls---tfS~ 521 (844)
..|++++|+||||||||||+++|++...... .| .++..........+..++..++.. +++..++. .++.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 4689999999999999999999976543311 11 122221100111122333334332 12222221 1111
Q ss_pred -Hh----hHHHHHHH-h---CCCCcEEEEecCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003142 522 -HL----KQIGNIIS-Q---STSQSLVLLDEIGAGTNPLE------------GTALGMSLLEAFAESGSLLTIATTHHGE 580 (844)
Q Consensus 522 -~~----~rl~~il~-~---a~~p~LLLLDEP~sGlDp~~------------~~al~~~Ile~L~~~g~t~vIitTHd~e 580 (844)
+. .++..++. . ..+|++|+||||++++|+.. ...+...+.+...+.|++ ||++||+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~t-vi~vtH~~~ 181 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA-VFVTNQVQA 181 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCe-EEEEeeccc
Confidence 11 11111221 0 45899999999999999831 124555555555566887 999999543
Q ss_pred H----H-hhhccccceee
Q 003142 581 L----K-TLKYSNDFFEN 593 (844)
Q Consensus 581 l----~-~~a~~~~~v~n 593 (844)
. . .+|+.+..+.+
T Consensus 182 ~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 182 NGGHILAHSATLRVYLRK 199 (231)
T ss_dssp --------CCSEEEEEEE
T ss_pred CcchhhHhhceEEEEEEe
Confidence 2 3 45666555544
No 79
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.27 E-value=1.8e-13 Score=139.60 Aligned_cols=58 Identities=12% Similarity=-0.125 Sum_probs=42.6
Q ss_pred hCCCCcEEEEecCCCCC----CHHHHHHHHHHHHHHHH-hcCCeEEEEEccchhHH-hhhccccce
Q 003142 532 QSTSQSLVLLDEIGAGT----NPLEGTALGMSLLEAFA-ESGSLLTIATTHHGELK-TLKYSNDFF 591 (844)
Q Consensus 532 ~a~~p~LLLLDEP~sGl----Dp~~~~al~~~Ile~L~-~~g~t~vIitTHd~el~-~~a~~~~~v 591 (844)
++.+|++++||||++|+ |+.....+. .++..+. +.|.+ +|++|||.+.+ .+|+++..+
T Consensus 138 l~~~p~~~~LDep~~~l~~~~d~~~~~~l~-~~l~~l~~~~g~t-vi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 138 FLAPPSWQDLQARLIGRGTETADVIQRRLD-TARIELAAQGDFD-KVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp EEECSCHHHHHHHHHTTSCSCHHHHHHHHH-HHHHHHHGGGGSS-EEEECSSHHHHHHHHHHHHC-
T ss_pred EEECCCHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHhhhccCc-EEEECCCHHHHHHHHHHHHHh
Confidence 35689999999999998 665555554 4555665 45787 99999998776 578877654
No 80
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.23 E-value=9.8e-12 Score=133.31 Aligned_cols=151 Identities=16% Similarity=0.126 Sum_probs=83.9
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccc---cccccccccccchhHHH---hhhCCch-----
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---LHILSSEYAKVPWFDSV---FADIGDE----- 509 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---~~vpa~~~~~i~~~~~i---~~~ig~~----- 509 (844)
+..++++++++ ..|++++|+||||+|||||+++|++...... | .++.. +...-.+...+ +..+...
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~-e~~~~~~~~r~~~~~~~~~~~~~~~l 98 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAML-EESVEETAEDLIGLHNRVRLRQSDSL 98 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEES-SSCHHHHHHHHHHHHTTCCGGGCHHH
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeC-cCCHHHHHHHHHHHHcCCChhhcccc
Confidence 34567777777 7899999999999999999999976654432 3 12211 11100000111 0011000
Q ss_pred -----------hhHhh-----h--h----hhhh-HHhhHHHHHHHhCCCCcEEEEecCCC---C---CCH-HHHHHHHHH
Q 003142 510 -----------QSLSQ-----S--L----STFS-GHLKQIGNIISQSTSQSLVLLDEIGA---G---TNP-LEGTALGMS 559 (844)
Q Consensus 510 -----------q~i~~-----~--l----stfS-~~~~rl~~il~~a~~p~LLLLDEP~s---G---lDp-~~~~al~~~ 559 (844)
+.+.. . + ...+ +++++....++...+|++||||||++ + +|+ .....+..
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~- 177 (296)
T 1cr0_A 99 KREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMT- 177 (296)
T ss_dssp HHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHH-
T ss_pred ccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHH-
Confidence 00000 0 0 1112 23344444556788999999999999 4 344 33344443
Q ss_pred HHHHH-HhcCCeEEEEEccch-----------------------hHHhhhccccceeeeEE
Q 003142 560 LLEAF-AESGSLLTIATTHHG-----------------------ELKTLKYSNDFFENACM 596 (844)
Q Consensus 560 Ile~L-~~~g~t~vIitTHd~-----------------------el~~~a~~~~~v~ng~v 596 (844)
.+..+ .+.|++ ||++||+. .+..+|+.+..+.++..
T Consensus 178 ~L~~la~~~~~~-vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 178 KLKGFAKSTGVV-LVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHCCE-EEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHhCCe-EEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 34444 455887 99999995 34468888888877764
No 81
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.20 E-value=4.1e-11 Score=122.06 Aligned_cols=139 Identities=12% Similarity=0.045 Sum_probs=75.2
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhcc-ccccccccccccchhHHHhhhCCch-hhHh-hh--------------
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS-GLHILSSEYAKVPWFDSVFADIGDE-QSLS-QS-------------- 515 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~-G~~vpa~~~~~i~~~~~i~~~ig~~-q~i~-~~-------------- 515 (844)
..|++++|+||||+|||||++.++........ ..++.. +... ..+...+..++.. +... ..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT-EESR-DSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES-SSCH-HHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc-ccCH-HHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 46789999999999999999999754432211 112221 1110 0011111112110 0000 00
Q ss_pred --hhhhhH-HhhHHHHHHHhCCCCc--EEEEecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEccchh--------
Q 003142 516 --LSTFSG-HLKQIGNIISQSTSQS--LVLLDEIGAGT--NPLEGTALGMSLLEAFAESGSLLTIATTHHGE-------- 580 (844)
Q Consensus 516 --lstfS~-~~~rl~~il~~a~~p~--LLLLDEP~sGl--Dp~~~~al~~~Ile~L~~~g~t~vIitTHd~e-------- 580 (844)
....+. +..+.........+|+ +|+||||++++ |+.....+...+.+...+.|++ +|++||+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~-vi~~~h~~~~~~~~~~~ 177 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFT-IYATSQYAITTSQAFGF 177 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEE-EEEEEC-----------
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCe-EEEEeccCccccccccc
Confidence 001122 2222222222234788 99999999877 9977777766555544566886 999999972
Q ss_pred -HHhhhccccceeee
Q 003142 581 -LKTLKYSNDFFENA 594 (844)
Q Consensus 581 -l~~~a~~~~~v~ng 594 (844)
+..+|+.+..+...
T Consensus 178 ~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 178 GVEHVADGIIRFRRM 192 (235)
T ss_dssp CHHHHCSEEEEEEEE
T ss_pred chheeeeEEEEEEEE
Confidence 45678777766543
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.15 E-value=2.3e-11 Score=141.30 Aligned_cols=151 Identities=16% Similarity=0.170 Sum_probs=88.1
Q ss_pred cCCccceeEEEE-e-cCceEEEEEccCCCCchhhHhhh--hhHHHhhccccccccccc--------cccchhHHHhhh--
Q 003142 440 ELAHPVPIDIFI-A-RKTRVLVITGPNTGGKTICLKTV--GLAVMMAKSGLHILSSEY--------AKVPWFDSVFAD-- 505 (844)
Q Consensus 440 ~~~~~V~~disl-~-~~g~iv~ItGPNGsGKTTLLK~I--g~l~~~~q~G~~vpa~~~--------~~i~~~~~i~~~-- 505 (844)
.++..+++++++ + ..|++++|+||||||||||++++ +++........++...+. ..+++..+-+..
T Consensus 22 ~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 22 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 345678899999 6 88999999999999999999994 444332222223322110 011111111100
Q ss_pred ----CCch--hhHhhhhhhhhH--HhhHHHHHHHhCCCCcEEEEecCCC-----CCCHHHHHHHHHHHHHHHHhcCCeEE
Q 003142 506 ----IGDE--QSLSQSLSTFSG--HLKQIGNIISQSTSQSLVLLDEIGA-----GTNPLEGTALGMSLLEAFAESGSLLT 572 (844)
Q Consensus 506 ----ig~~--q~i~~~lstfS~--~~~rl~~il~~a~~p~LLLLDEP~s-----GlDp~~~~al~~~Ile~L~~~g~t~v 572 (844)
+... ......+..+.- .+.++...+. ..+|++|+||||++ ++|+.....+ ..++..+++.|+| +
T Consensus 102 ~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS-~g~~~~lilDe~t~~~~~~~lD~~~~~~l-~~ll~~l~~~g~t-v 178 (525)
T 1tf7_A 102 KLFILDASPDPEGQEVVGGFDLSALIERINYAIQ-KYRARRVSIDSVTSVFQQYDASSVVRREL-FRLVARLKQIGAT-T 178 (525)
T ss_dssp SEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHH-HHTCSEEEEECSTTTSTTTCCHHHHHHHH-HHHHHHHHHHTCE-E
T ss_pred cEEEEecCcccchhhhhcccCHHHHHHHHHHHHH-HcCCCEEEECCHHHHHHhcCCHHHHHHHH-HHHHHHHHHCCCE-E
Confidence 0000 000000111111 1112222221 25789999999987 4588666666 4677888888997 9
Q ss_pred EEEccchhH---------H-hhhccccceee
Q 003142 573 IATTHHGEL---------K-TLKYSNDFFEN 593 (844)
Q Consensus 573 IitTHd~el---------~-~~a~~~~~v~n 593 (844)
|++||+.+. . .+|+++..+.+
T Consensus 179 l~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 179 VMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp EEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred EEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 999999765 2 34888888877
No 83
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.15 E-value=1.3e-10 Score=117.88 Aligned_cols=125 Identities=18% Similarity=0.077 Sum_probs=69.7
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCch-hhHhhhh--hhhhH---HhhHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDE-QSLSQSL--STFSG---HLKQI 526 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~-q~i~~~l--stfS~---~~~rl 526 (844)
..|++++|+||||+|||||++.++. .......++..........+..+...++.. +.+...+ ...+. ..+.+
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 4678999999999999999999976 211112333331111111222333333331 1111111 11111 12334
Q ss_pred HHHHHhCC-CCcEEEEecCCCCCCHHH--------HHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003142 527 GNIISQST-SQSLVLLDEIGAGTNPLE--------GTALGMSLLEAFAESGSLLTIATTHHGE 580 (844)
Q Consensus 527 ~~il~~a~-~p~LLLLDEP~sGlDp~~--------~~al~~~Ile~L~~~g~t~vIitTHd~e 580 (844)
..+.+++. +|++|++|||++++|+.. ...+...+.+...+.+++ +|+++|...
T Consensus 96 ~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~-vi~~~h~~~ 157 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIP-VIVINQVHF 157 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCC-EEEEECSSS
T ss_pred HHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeeEEE
Confidence 44445555 499999999999999732 123333344444556887 899999753
No 84
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.12 E-value=5.6e-11 Score=126.56 Aligned_cols=126 Identities=9% Similarity=0.035 Sum_probs=69.8
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhh-----------ccccccccccccccchhHH---Hh------------hhC
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-----------KSGLHILSSEYAKVPWFDS---VF------------ADI 506 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-----------q~G~~vpa~~~~~i~~~~~---i~------------~~i 506 (844)
..|++++|+||||+|||||++.+++..... ....++.. +...-.+... +- ..+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~-e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l 106 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPA-EDPPTAIHHRLHALGAHLSAEERQAVADGL 106 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEES-SSCHHHHHHHHHHHHTTSCHHHHHHHHHHE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEEC-CCCHHHHHHHHHHHHhhcChhhhhhccCce
Confidence 578999999999999999999997643221 00112222 1111001001 10 111
Q ss_pred CchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCC--CCCHHHH---HHHHHHHHHHHHhcCCeEEEEEccchhH
Q 003142 507 GDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGA--GTNPLEG---TALGMSLLEAFAESGSLLTIATTHHGEL 581 (844)
Q Consensus 507 g~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~s--GlDp~~~---~al~~~Ile~L~~~g~t~vIitTHd~el 581 (844)
...+.....+..+|+++.+. +.+++.+|++|+||||++ ++|+... ..+...+.....+.|++ ||++||+...
T Consensus 107 ~l~~~~~~~~~~ls~g~~~~--i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t-vi~i~H~~~~ 183 (279)
T 1nlf_A 107 LIQPLIGSLPNIMAPEWFDG--LKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHASKG 183 (279)
T ss_dssp EECCCTTSCCCTTSHHHHHH--HHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC---
T ss_pred EEeecCCCCcccCCHHHHHH--HHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE-EEEEecCCCc
Confidence 11111112234455555333 334456899999999999 9997433 45544444444567887 9999998765
Q ss_pred H
Q 003142 582 K 582 (844)
Q Consensus 582 ~ 582 (844)
.
T Consensus 184 ~ 184 (279)
T 1nlf_A 184 A 184 (279)
T ss_dssp -
T ss_pred c
Confidence 4
No 85
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.12 E-value=6.2e-12 Score=138.04 Aligned_cols=129 Identities=11% Similarity=0.080 Sum_probs=80.8
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhh--hH
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTF--SG 521 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstf--S~ 521 (844)
++.++++. ..|++++|+|||||||||||++|+++... ..|...-. ....+. +.. .....+.+ .+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~-~~~e~~--------~~~---~~~~i~~~~ggg 226 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIE-DTEEIV--------FKH---HKNYTQLFFGGN 226 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEE-SSCCCC--------CSS---CSSEEEEECBTT
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEEC-Ceeccc--------ccc---chhEEEEEeCCC
Confidence 67777777 67789999999999999999999654321 22322111 000110 000 00011111 34
Q ss_pred HhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccceeeeE
Q 003142 522 HLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFFENAC 595 (844)
Q Consensus 522 ~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v~ng~ 595 (844)
..++.....++..+|+++|||||++ . + + ..+++.+...+.+ +|+|||+......+++...+.+|.
T Consensus 227 ~~~r~~la~aL~~~p~ilildE~~~---~-e---~-~~~l~~~~~g~~t-vi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 227 ITSADCLKSCLRMRPDRIILGELRS---S-E---A-YDFYNVLCSGHKG-TLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp BCHHHHHHHHTTSCCSEEEECCCCS---T-H---H-HHHHHHHHTTCCC-EEEEEECSSHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHhhhCCCEEEEcCCCh---H-H---H-HHHHHHHhcCCCE-EEEEEcccHHHHHhhhheehhcCC
Confidence 4556666667788999999999976 2 2 2 2345565544445 899999988778888887775553
No 86
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.12 E-value=8.5e-11 Score=116.52 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=64.0
Q ss_pred CceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhC
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQS 533 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a 533 (844)
.|+.++|+||||+|||||+++|+...... .|..+. .+. ...++.. ....++..... .++..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-~g~~~~-----~~~-~~~~~~~---------~~~~~~~~~~~--~~~~~~ 98 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEK-KGIRGY-----FFD-TKDLIFR---------LKHLMDEGKDT--KFLKTV 98 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHH-SCCCCC-----EEE-HHHHHHH---------HHHHHHHTCCS--HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHH-cCCeEE-----EEE-HHHHHHH---------HHHHhcCchHH--HHHHHh
Confidence 46789999999999999999997544321 221110 011 1111111 01111111100 222234
Q ss_pred CCCcEEEEecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003142 534 TSQSLVLLDEIGA-GTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 534 ~~p~LLLLDEP~s-GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~ 579 (844)
.+|++|+||||++ ++|+.....+ ..+++...+.|.+ +|+|||+.
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l-~~ll~~~~~~~~~-ii~tsn~~ 143 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELI-SYIITYRYNNLKS-TIITTNYS 143 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHH-HHHHHHHHHTTCE-EEEECCCC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHH-HHHHHHHHHcCCC-EEEEcCCC
Confidence 4899999999995 8999665554 5677777777887 89999974
No 87
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.09 E-value=3e-12 Score=144.39 Aligned_cols=144 Identities=13% Similarity=0.060 Sum_probs=83.4
Q ss_pred ccceeEEEEe-cCce--------------------EEEEEccCCCCchhhHhhhhhHHHhhcccc------------ccc
Q 003142 443 HPVPIDIFIA-RKTR--------------------VLVITGPNTGGKTICLKTVGLAVMMAKSGL------------HIL 489 (844)
Q Consensus 443 ~~V~~disl~-~~g~--------------------iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~------------~vp 489 (844)
+.+.+++++. ..|+ +++|+||||+|||||||+|.++.... .|. +++
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~-~GsI~~~g~~~t~~~~v~ 114 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE-EGAAKTGVVEVTMERHPY 114 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS-TTSCCCCC----CCCEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc-CceEEECCeecceeEEec
Confidence 4577788887 6677 99999999999999999997643211 111 111
Q ss_pred cccc-cccch------------hHHHhhhCCchhhHhhhhhhhhHH--h-hHHHHHHHhCC----------CCcEEEEec
Q 003142 490 SSEY-AKVPW------------FDSVFADIGDEQSLSQSLSTFSGH--L-KQIGNIISQST----------SQSLVLLDE 543 (844)
Q Consensus 490 a~~~-~~i~~------------~~~i~~~ig~~q~i~~~lstfS~~--~-~rl~~il~~a~----------~p~LLLLDE 543 (844)
.... ..+.+ ...++..++..+. ...+. +|++ + +++..+.+++. +|++++|||
T Consensus 115 q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDE 192 (413)
T 1tq4_A 115 KHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNE 192 (413)
T ss_dssp ECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH
T ss_pred cccccCCeeehHhhcccchHHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCc
Confidence 1000 00110 1222333332221 11111 4544 4 44444444444 899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH----HhcC---CeEEEEEccchh---HHhhhcccc
Q 003142 544 IGAGTNPLEGTALGMSLLEAF----AESG---SLLTIATTHHGE---LKTLKYSND 589 (844)
Q Consensus 544 P~sGlDp~~~~al~~~Ile~L----~~~g---~t~vIitTHd~e---l~~~a~~~~ 589 (844)
||+|+||.....+...+.+.. .+.| .++++++||+.. +..+++.+.
T Consensus 193 PtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 193 ADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999988887765444432 2332 233888999854 555666553
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.09 E-value=8.3e-11 Score=136.69 Aligned_cols=136 Identities=10% Similarity=-0.026 Sum_probs=88.5
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---ccccccccccchhHHHhhhCCch----------hhHhhhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---HILSSEYAKVPWFDSVFADIGDE----------QSLSQSLSTF 519 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---~vpa~~~~~i~~~~~i~~~ig~~----------q~i~~~lstf 519 (844)
..|++++|+||||+|||||++++++.... + |. ++.. +.....++.. ...++.. .........+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~-G~~vi~~~~-ee~~~~l~~~-~~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACA-N-KERAILFAY-EESRAQLLRN-AYSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHT-T-TCCEEEEES-SSCHHHHHHH-HHTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHh-C-CCCEEEEEE-eCCHHHHHHH-HHHcCCCHHHHHhCCCEEEEEeccccC
Confidence 46799999999999999999999765443 2 32 2222 1111111111 1122221 1111223445
Q ss_pred hHHh-hHHHHHHHhCCCCcEEEEecCCCCCCHH-----HHHHHHHHHHHHHHhcCCeEEEEEccch----------hHH-
Q 003142 520 SGHL-KQIGNIISQSTSQSLVLLDEIGAGTNPL-----EGTALGMSLLEAFAESGSLLTIATTHHG----------ELK- 582 (844)
Q Consensus 520 S~~~-~rl~~il~~a~~p~LLLLDEP~sGlDp~-----~~~al~~~Ile~L~~~g~t~vIitTHd~----------el~- 582 (844)
|+++ +++........+|++|||| |++|+|+. ....+ ..++..+++.|++ +|+|||+. ...
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i-~~ll~~l~~~g~t-vilvsh~~~~~~~~~~~~~~l~ 431 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFV-IGVTGYAKQEEIT-GLFTNTSDQFMGAHSITDSHIS 431 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHH-HHHHHHHHHTTCE-EEEEEECSSSSCCCSSCSSCCT
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHH-HHHHHHHHhCCCE-EEEEECcccccCcccccCcccc
Confidence 6654 5555555668899999999 99999996 45544 5677888888997 99999997 443
Q ss_pred hhhccccceeeeE
Q 003142 583 TLKYSNDFFENAC 595 (844)
Q Consensus 583 ~~a~~~~~v~ng~ 595 (844)
.+|+.+..+.++.
T Consensus 432 ~~~D~vi~L~~ge 444 (525)
T 1tf7_A 432 TITDTIILLQYVE 444 (525)
T ss_dssp TTCSEEEEEEEEE
T ss_pred eeeeEEEEEEEEE
Confidence 5788888777665
No 89
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.08 E-value=5e-11 Score=126.67 Aligned_cols=123 Identities=17% Similarity=0.229 Sum_probs=71.3
Q ss_pred eeEEEEecCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHH----Hh--hhCCchhhHhhhhhhh
Q 003142 446 PIDIFIARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDS----VF--ADIGDEQSLSQSLSTF 519 (844)
Q Consensus 446 ~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~----i~--~~ig~~q~i~~~lstf 519 (844)
+.+++ -.+|++++|+|||||||||||++|.++......|........ +.+..+ +. ..++.. ...|
T Consensus 17 l~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~--i~~~~~~~~~~v~q~~~gl~------~~~l 87 (261)
T 2eyu_A 17 VLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP--IEYVFKHKKSIVNQREVGED------TKSF 87 (261)
T ss_dssp HHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS--CCSCCCCSSSEEEEEEBTTT------BSCH
T ss_pred HHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc--ceeecCCcceeeeHHHhCCC------HHHH
Confidence 33444 356789999999999999999999765433213432211011 111000 00 011111 0122
Q ss_pred hHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003142 520 SGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591 (844)
Q Consensus 520 S~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v 591 (844)
+.....++..+|+++|||||+ |+.... .+++. ...|.+ |++|||+.+...++++...+
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~----~~l~~-~~~g~~-vl~t~H~~~~~~~~dri~~l 145 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVE----TALRA-AETGHL-VFGTLHTNTAIDTIHRIVDI 145 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHH----HHHHH-HHTTCE-EEEEECCSSHHHHHHHHHHT
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHH----HHHHH-HccCCE-EEEEeCcchHHHHHHHHhhh
Confidence 233334445699999999996 885533 23343 356886 99999998877777765444
No 90
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.01 E-value=4.2e-10 Score=122.04 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=69.0
Q ss_pred EEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------------ccccccccccc--
Q 003142 448 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------------HILSSEYAKVP-- 497 (844)
Q Consensus 448 disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------------~vpa~~~~~i~-- 497 (844)
.+++. ..|++++|+|||||||||+++.|++.... ..|. +++.......+
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 35555 67899999999999999999999765432 1121 11110000000
Q ss_pred -hhHHHh------------hhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCc--EEEEecCCCCCCHHHHHHHHHHHHH
Q 003142 498 -WFDSVF------------ADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQS--LVLLDEIGAGTNPLEGTALGMSLLE 562 (844)
Q Consensus 498 -~~~~i~------------~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~--LLLLDEP~sGlDp~~~~al~~~Ile 562 (844)
.++.+. ...|..+.....+..+| .+++..+.+++.+|+ +|+|| ||+|+|+... +.
T Consensus 171 ~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~-------~~ 240 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ-------AR 240 (302)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH--HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH-------HH
T ss_pred HHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH--HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH-------HH
Confidence 111110 11122222222333444 344555556678999 99999 9999999532 13
Q ss_pred HHH-hcCCeEEEEEccch
Q 003142 563 AFA-ESGSLLTIATTHHG 579 (844)
Q Consensus 563 ~L~-~~g~t~vIitTHd~ 579 (844)
.+. ..|.+ +|++||..
T Consensus 241 ~~~~~~g~t-~iiiThlD 257 (302)
T 3b9q_A 241 EFNEVVGIT-GLILTKLD 257 (302)
T ss_dssp HHHHHTCCC-EEEEECCS
T ss_pred HHHHhcCCC-EEEEeCCC
Confidence 344 45887 89999953
No 91
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.98 E-value=3.2e-10 Score=125.73 Aligned_cols=121 Identities=15% Similarity=0.081 Sum_probs=68.5
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhH--HHhhhCCchhhHhhhhhhhhHHhhHHHHHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFD--SVFADIGDEQSLSQSLSTFSGHLKQIGNII 530 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~--~i~~~ig~~q~i~~~lstfS~~~~rl~~il 530 (844)
.++.+++|+|||||||||||++|.+.......|..+.......+..-. ..+.... +....-+|.. ....
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~----~~~~~~~~~~-----~La~ 191 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQRE----VHRDTLGFSE-----ALRS 191 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEE----BTTTBSCHHH-----HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeee----eccccCCHHH-----HHHH
Confidence 455689999999999999999986554333223222111111111000 0000000 0000011221 3344
Q ss_pred HhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003142 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591 (844)
Q Consensus 531 ~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v 591 (844)
++..+|++||||||+ |+.. +..+++ +...|.+ +|+|||+.....++++...+
T Consensus 192 aL~~~PdvillDEp~---d~e~----~~~~~~-~~~~G~~-vl~t~H~~~~~~~~dRli~l 243 (356)
T 3jvv_A 192 ALREDPDIILVGEMR---DLET----IRLALT-AAETGHL-VFGTLHTTSAAKTIDRVVDV 243 (356)
T ss_dssp HTTSCCSEEEESCCC---SHHH----HHHHHH-HHHTTCE-EEEEESCSSHHHHHHHHHHT
T ss_pred HhhhCcCEEecCCCC---CHHH----HHHHHH-HHhcCCE-EEEEEccChHHHHHHHHhhh
Confidence 567899999999995 7632 222233 3566887 99999998887888777665
No 92
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.94 E-value=1.5e-10 Score=127.93 Aligned_cols=145 Identities=13% Similarity=0.115 Sum_probs=90.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccc-c------------------------c
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY-A------------------------K 495 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~-~------------------------~ 495 (844)
+..+.+++ |. ..|++++|+||||+||||||++|++..-. ..|.+....+. . .
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~-~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA-DIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC-SEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC-CEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 34567777 77 78889999999999999999999765321 11211100000 0 0
Q ss_pred cchhHH---HhhhCCchhh----------HhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHH
Q 003142 496 VPWFDS---VFADIGDEQS----------LSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLE 562 (844)
Q Consensus 496 i~~~~~---i~~~ig~~q~----------i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile 562 (844)
.+...+ .+..++..+. +...++.||++++++..+ +.+|++ ++|+||.....+. .+++
T Consensus 136 ~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la---l~~p~~------t~Gldp~~~~~l~-~lle 205 (347)
T 2obl_A 136 RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA---SGEPDV------RGGFPPSVFSSLP-KLLE 205 (347)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH---TTCCCC------BTTBCHHHHHHHH-HHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH---cCCCCc------ccCCCHHHHHHHH-HHHH
Confidence 000011 0111111111 014567788888655555 456655 8999996666654 5666
Q ss_pred HHHh--cCC-----eEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 563 AFAE--SGS-----LLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 563 ~L~~--~g~-----t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
.+.. .|. | |+++|||++ ..+|+++..+.+|++.++.
T Consensus 206 r~~~~~~GsiT~~~t-Vl~~thdl~-~~i~d~v~~i~dG~Ivl~~ 248 (347)
T 2obl_A 206 RAGPAPKGSITAIYT-VLLESDNVN-DPIGDEVRSILDGHIVLTR 248 (347)
T ss_dssp TCEECSSSEEEEEEE-EECCSSCCC-CHHHHHHHHHCSEEEEBCH
T ss_pred HHhCCCCCCeeeEEE-EEEeCCCCC-ChhhhheEEeeCcEEEEeC
Confidence 6653 355 5 899999988 6789999999999998765
No 93
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.93 E-value=7.5e-10 Score=122.77 Aligned_cols=118 Identities=20% Similarity=0.195 Sum_probs=69.8
Q ss_pred EEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc---------------------------cccccccc-ccc--
Q 003142 449 IFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL---------------------------HILSSEYA-KVP-- 497 (844)
Q Consensus 449 isl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~---------------------------~vpa~~~~-~i~-- 497 (844)
++|. ..|++++|+|||||||||+++.|++.... ..|. +++. ... ..+
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q-~~~~~~p~~ 227 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVA-EGDKAKAAT 227 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECC-SSSSCCHHH
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEecccccccchhHHHHHHHHhcCeEEEEe-cccccChhh
Confidence 4555 57899999999999999999999765432 1121 1111 000 000
Q ss_pred -hhHHH------------hhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCc--EEEEecCCCCCCHHHHHHHHHHHHH
Q 003142 498 -WFDSV------------FADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQS--LVLLDEIGAGTNPLEGTALGMSLLE 562 (844)
Q Consensus 498 -~~~~i------------~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~--LLLLDEP~sGlDp~~~~al~~~Ile 562 (844)
.++.+ +...|..+.....+..+| .+++..+.+++.+|+ +|+|| ||+|+|+.... .
T Consensus 228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS--kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-------~ 297 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI--ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-------R 297 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH--HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH-------H
T ss_pred hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH--HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH-------H
Confidence 11111 111222222223334444 455555666788999 99999 99999985331 2
Q ss_pred HHH-hcCCeEEEEEccch
Q 003142 563 AFA-ESGSLLTIATTHHG 579 (844)
Q Consensus 563 ~L~-~~g~t~vIitTHd~ 579 (844)
.+. ..|.+ +|++||..
T Consensus 298 ~~~~~~g~t-~iiiThlD 314 (359)
T 2og2_A 298 EFNEVVGIT-GLILTKLD 314 (359)
T ss_dssp HHHHHTCCC-EEEEESCT
T ss_pred HHHHhcCCe-EEEEecCc
Confidence 333 45887 89999953
No 94
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.93 E-value=7.7e-11 Score=119.33 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCchhhHhhhhhHHH
Q 003142 455 TRVLVITGPNTGGKTICLKTVGLAVM 480 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~l~~ 480 (844)
|++++|+||||+|||||+++|++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 46789999999999999999987654
No 95
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.90 E-value=2.2e-09 Score=110.44 Aligned_cols=126 Identities=16% Similarity=0.118 Sum_probs=64.4
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhc------cc-ccccccccc-ccchhHHHhhhCCch-hhHhhhhh---hhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAK------SG-LHILSSEYA-KVPWFDSVFADIGDE-QSLSQSLS---TFS 520 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q------~G-~~vpa~~~~-~i~~~~~i~~~ig~~-q~i~~~ls---tfS 520 (844)
..|++++|+||||+|||||++.++....... .+ .++.. +.. ....+......++.. +.+...+. .++
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT-EGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES-SSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC-CCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 4678999999999999999999976433311 11 22222 111 111122233334432 11111111 111
Q ss_pred H-HhhH-HHHHHHh--CCCCcEEEEecCCCCCCHH-------H-----HHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003142 521 G-HLKQ-IGNIISQ--STSQSLVLLDEIGAGTNPL-------E-----GTALGMSLLEAFAESGSLLTIATTHHGE 580 (844)
Q Consensus 521 ~-~~~r-l~~il~~--a~~p~LLLLDEP~sGlDp~-------~-----~~al~~~Ile~L~~~g~t~vIitTHd~e 580 (844)
. +... +..+... ..+|++|+||||++.+|+. . ...+...+.+...+.|++ ||+++|...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~t-vi~~~h~~~ 175 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVA-VVITNQVVA 175 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCE-EEEEC----
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeeeee
Confidence 1 1111 1112222 2579999999999999984 1 233444444444556887 999999743
No 96
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.90 E-value=2.3e-09 Score=104.48 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=60.2
Q ss_pred hhhhhhhhHHhhHHHHH-------HHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhh
Q 003142 513 SQSLSTFSGHLKQIGNI-------ISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLK 585 (844)
Q Consensus 513 ~~~lstfS~~~~rl~~i-------l~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a 585 (844)
....+++|+++++...+ .+++.+|+++||||||+|||+.....+. .++..+...|.+ +|++||+.++..+|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~t-iiivsH~~~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQ-VILVSHDEELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHH-HHHHHTGGGSSE-EEEEESCGGGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHH-HHHHHHHccCCE-EEEEEChHHHHHhC
Confidence 45567899888776544 3456899999999999999997777765 455566666787 99999999877888
Q ss_pred ccccce
Q 003142 586 YSNDFF 591 (844)
Q Consensus 586 ~~~~~v 591 (844)
+++..+
T Consensus 130 d~ii~l 135 (148)
T 1f2t_B 130 DHVIRI 135 (148)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 887766
No 97
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.89 E-value=2.8e-09 Score=117.79 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=69.7
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHh-hcc----c--cccccccccc-cchhHHHhhhCCch-hhHhhhhh---hh-
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKS----G--LHILSSEYAK-VPWFDSVFADIGDE-QSLSQSLS---TF- 519 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~-~q~----G--~~vpa~~~~~-i~~~~~i~~~ig~~-q~i~~~ls---tf- 519 (844)
+.|+++.|+||||+|||||++++++.... +.. | .++.. +... ...+..++..++.. +.+..++. .+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~-e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT-ENTFRPERIREIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES-SSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC-CCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCC
Confidence 57899999999999999999999765421 112 2 33333 2211 01122233333322 12222221 11
Q ss_pred hHHhhH-HHHHHHhC-------CCCcEEEEecCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEEccch
Q 003142 520 SGHLKQ-IGNIISQS-------TSQSLVLLDEIGAGTNPLE------------GTALGMSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 520 S~~~~r-l~~il~~a-------~~p~LLLLDEP~sGlDp~~------------~~al~~~Ile~L~~~g~t~vIitTHd~ 579 (844)
+.++.+ +..+...+ .+|++||||||++++|+.. ...+...+.....+.+++ ||+|+|..
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~t-vii~~h~~ 286 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIA-VFVTNQVQ 286 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCE-EEEEEECC
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcE-EEEEcccc
Confidence 223322 22232333 6899999999999999852 223333333333446887 99999986
Q ss_pred h
Q 003142 580 E 580 (844)
Q Consensus 580 e 580 (844)
.
T Consensus 287 ~ 287 (349)
T 1pzn_A 287 A 287 (349)
T ss_dssp -
T ss_pred c
Confidence 4
No 98
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.89 E-value=3.5e-09 Score=102.89 Aligned_cols=87 Identities=15% Similarity=0.204 Sum_probs=56.9
Q ss_pred CceEEEEEccCCCCchhhHhhhhhHHHhhccc---cccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 530 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il 530 (844)
.++.++|+||||+|||||+++++..... .| .++++.. +...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~~-------------~~~~--------------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAAS-------------MPLT--------------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETTT-------------SCCC---------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHHH-------------hhHH---------------------
Confidence 5678999999999999999999764432 23 1222100 0000
Q ss_pred HhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003142 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578 (844)
Q Consensus 531 ~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd 578 (844)
..+.++++|+||||++ +++.....+ ..+++.+.+.|.+.+|+|||.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l-~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALL-FSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHH-HHHHHHHHHHTCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHH-HHHHHHHHHcCCcEEEEECCC
Confidence 1234789999999998 555454444 467777777776426778885
No 99
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.85 E-value=3.2e-10 Score=118.52 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=24.0
Q ss_pred CCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 441 LAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 441 ~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
+++.++++++|+ ..|.+++|+||||||||||+|+|++.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 466789999999 88899999999999999999999664
No 100
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.77 E-value=9.6e-11 Score=127.16 Aligned_cols=129 Identities=11% Similarity=-0.030 Sum_probs=80.6
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccc--------cccchh-------HHHhhhC
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEY--------AKVPWF-------DSVFADI 506 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~--------~~i~~~-------~~i~~~i 506 (844)
..+++++++. ++|++++|+||||||||||+++|.++. -...-.+++.... ..+.+. ...+..+
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v~q~~~lf~~ti~~~ni~~~~~~~~~~~~~i~~~ 191 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTY 191 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGGGTTSGGGGGGGTTCSCEEEEEECHHHHHHHHHT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEecCccccccccHHHHhhccCccccHHHHHHHHHH
Confidence 3578888898 889999999999999999999997765 1111112222100 001110 0111110
Q ss_pred CchhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhc
Q 003142 507 GDEQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKY 586 (844)
Q Consensus 507 g~~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~ 586 (844)
..+-+. ...+|+++++. +.+++.+|+||| |++||+.....+. . .||+.....+|+
T Consensus 192 -L~~gld--g~~LSgGqkQR--ARAll~~p~iLl----Ts~LD~~~~~~i~-----~-----------ltH~~~~~~~aD 246 (305)
T 2v9p_A 192 -LRNALD--GYPVSIDRKHK--AAVQIKAPPLLV----TSNIDVQAEDRYL-----Y-----------LHSRVQTFRFEQ 246 (305)
T ss_dssp -TTGGGG--TCCEECCCSSC--CCCEECCCCEEE----EESSCSTTCGGGG-----G-----------GTTTEEEEECCC
T ss_pred -hHccCC--ccCcCHHHHHH--HHHHhCCCCEEE----ECCCCHHHHHHHH-----H-----------HhCCHHHHHhCC
Confidence 011111 34678877766 667789999999 9999996555442 1 189888778999
Q ss_pred cccceeeeEEEE
Q 003142 587 SNDFFENACMEF 598 (844)
Q Consensus 587 ~~~~v~ng~v~f 598 (844)
++ .+.+|.+.+
T Consensus 247 ~i-vl~~G~iv~ 257 (305)
T 2v9p_A 247 PC-TDESGEQPF 257 (305)
T ss_dssp CC-CCC---CCC
T ss_pred EE-EEeCCEEEE
Confidence 99 898888764
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.76 E-value=2.3e-11 Score=123.50 Aligned_cols=46 Identities=13% Similarity=-0.044 Sum_probs=32.7
Q ss_pred CCCCcEEEEecCCCC-------CCHHHHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003142 533 STSQSLVLLDEIGAG-------TNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 533 a~~p~LLLLDEP~sG-------lDp~~~~al~~~Ile~L~~~g~t~vIitTHd~ 579 (844)
+.+|.++++|||+++ +|+.....+...+.+...+.|.+ ++.++|+.
T Consensus 109 i~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t-~~~~~~~~ 161 (211)
T 3asz_A 109 ILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRS-LEGVVAQY 161 (211)
T ss_dssp EEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCC-HHHHHHHH
T ss_pred EEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 345666677999999 89866666665555555566887 78888863
No 102
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.73 E-value=2.4e-09 Score=114.26 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.6
Q ss_pred EEEEccCCCCchhhHhhhhhHHH
Q 003142 458 LVITGPNTGGKTICLKTVGLAVM 480 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~l~~ 480 (844)
++|+||||+|||||||+|++...
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999977653
No 103
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.73 E-value=4.2e-10 Score=122.60 Aligned_cols=95 Identities=8% Similarity=0.040 Sum_probs=55.2
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhh----ccccccccccccccc--hhH--------------------HHhhhC
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMA----KSGLHILSSEYAKVP--WFD--------------------SVFADI 506 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~----q~G~~vpa~~~~~i~--~~~--------------------~i~~~i 506 (844)
..|.+++|+||||||||||+|+|+++.-.. .. .+++. .....+ ..+ .++..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v-~~v~q-d~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l 165 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRV-DLVTT-DGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSV 165 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCE-EEEEG-GGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeE-EEEec-CccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 568999999999999999999997654321 11 12232 111111 001 111111
Q ss_pred CchhhHhhhhhhhhHHhhHHH-HHHHhCCCCcEEEEecCCCCCCH
Q 003142 507 GDEQSLSQSLSTFSGHLKQIG-NIISQSTSQSLVLLDEIGAGTNP 550 (844)
Q Consensus 507 g~~q~i~~~lstfS~~~~rl~-~il~~a~~p~LLLLDEP~sGlDp 550 (844)
+ ..........||+++++.. .+.+++.+|++||||||+...|+
T Consensus 166 ~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 166 K-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp H-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred C-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 1 0000122345677665433 33355789999999999999985
No 104
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.73 E-value=8.1e-10 Score=113.78 Aligned_cols=137 Identities=13% Similarity=-0.004 Sum_probs=69.1
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcc--cccc----cc-ccccccch-------hHHHh-----
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKS--GLHI----LS-SEYAKVPW-------FDSVF----- 503 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~--G~~v----pa-~~~~~i~~-------~~~i~----- 503 (844)
..+++++|. ..|++++|+||||||||||+|+|+++. .... |..+ |. .....+.+ |....
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 89 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-PNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDF 89 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-TTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-CCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccch
Confidence 356788888 788999999999999999999997754 1111 1000 00 00001111 11110
Q ss_pred -------h-hCCch-hhHhhhh---------hhhhHHhhHHHHH------HHhCCCCcEEEEecCCCCCCHHHHHHHHHH
Q 003142 504 -------A-DIGDE-QSLSQSL---------STFSGHLKQIGNI------ISQSTSQSLVLLDEIGAGTNPLEGTALGMS 559 (844)
Q Consensus 504 -------~-~ig~~-q~i~~~l---------stfS~~~~rl~~i------l~~a~~p~LLLLDEP~sGlDp~~~~al~~~ 559 (844)
. ..|.. ..+...+ ..+|+++++...+ ..++.+|++++||||++++|......+...
T Consensus 90 l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~ 169 (218)
T 1z6g_A 90 LEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKR 169 (218)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHH
T ss_pred hhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHH
Confidence 0 00111 1111111 1346665544333 234568899999999999998665555544
Q ss_pred HHHHHHh------cCCeEEEEEccchhHH
Q 003142 560 LLEAFAE------SGSLLTIATTHHGELK 582 (844)
Q Consensus 560 Ile~L~~------~g~t~vIitTHd~el~ 582 (844)
+.....+ ..+. .|+++|+.+.+
T Consensus 170 l~~~~~~~~~~h~~~~d-~iiv~~~~~ea 197 (218)
T 1z6g_A 170 MEQLNIELHEANLLNFN-LSIINDDLTLT 197 (218)
T ss_dssp HHHHHHHHHHHTTSCCS-EEEECSSHHHH
T ss_pred HHHHHHHHHhhcccCCC-EEEECCCHHHH
Confidence 4433222 4566 78889986544
No 105
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.72 E-value=2.2e-09 Score=122.04 Aligned_cols=145 Identities=12% Similarity=0.097 Sum_probs=92.5
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc-----------------------------ccccc
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL-----------------------------HILSS 491 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~-----------------------------~vpa~ 491 (844)
+..+.+++ |. ..|++++|+|||||||||||++|+++.-. ..|. +++..
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~-~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA-DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC-SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 45678888 88 88899999999999999999999755311 1111 11110
Q ss_pred ccccc---chhH------HHhhhCCc-hhhHhhhhhhhhHHhhHHHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHH
Q 003142 492 EYAKV---PWFD------SVFADIGD-EQSLSQSLSTFSGHLKQIGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLL 561 (844)
Q Consensus 492 ~~~~i---~~~~------~i~~~ig~-~q~i~~~lstfS~~~~rl~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Il 561 (844)
..... ...+ ..+...+. -..+...++.||++++++..+ +.+|++ ++|+||.....+. .++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~------t~glD~~~~~~l~-~ll 291 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA------TKGYPPSVFAKLP-ALV 291 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC------SSSCCTTHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc------cccCCHHHHHHHH-HHH
Confidence 00000 0000 01111110 011123467788888666655 667776 9999996666664 566
Q ss_pred HHHHh---c-CC-----eEEEEEccchhHHhhhccccceeeeEEEEec
Q 003142 562 EAFAE---S-GS-----LLTIATTHHGELKTLKYSNDFFENACMEFDE 600 (844)
Q Consensus 562 e~L~~---~-g~-----t~vIitTHd~el~~~a~~~~~v~ng~v~fd~ 600 (844)
+.+.. . |. | |+++|||.. ..+|+++..+.+|++..+.
T Consensus 292 ~r~~~~~~~~GsiT~~~t-Vlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 292 ERAGNGIHGGGSITAFYT-VLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp TTCSCCSTTSCEEEEEEE-EECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HHHHhccCCCCcccceeE-EEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 66554 2 53 5 999999988 6789999999999998764
No 106
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.67 E-value=2.5e-08 Score=111.10 Aligned_cols=115 Identities=18% Similarity=0.233 Sum_probs=65.7
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccc------cchhHHHhhhCCchhhHhhhhhhhhHHhhHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAK------VPWFDSVFADIGDEQSLSQSLSTFSGHLKQI 526 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~------i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl 526 (844)
.+|.+++|+|||||||||||++|.+.......|..+....... +.++.+ ..+|. ....|+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q--~~~g~------~~~~~~~----- 200 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQ--REVGE------DTKSFAD----- 200 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEE--EEBTT------TBSCSHH-----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEe--eecCC------CHHHHHH-----
Confidence 4678899999999999999999976543321333211101111 111100 00111 1123332
Q ss_pred HHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003142 527 GNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589 (844)
Q Consensus 527 ~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~ 589 (844)
....++..+|+++|+|||+ |+.... .+++. ...|.+ +++|+|+.+...++++..
T Consensus 201 ~l~~~L~~~pd~illdE~~---d~e~~~----~~l~~-~~~g~~-vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 201 ALRAALREDPDVIFVGEMR---DLETVE----TALRA-AETGHL-VFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHH----HHHHH-HTTTCE-EEECCCCCSHHHHHHHHH
T ss_pred HHHHHhhhCcCEEEECCCC---CHHHHH----HHHHH-HhcCCE-EEEEECcchHHHHHHHHH
Confidence 2223345699999999995 774322 23343 356786 899999977666666554
No 107
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.63 E-value=3.7e-08 Score=120.79 Aligned_cols=96 Identities=24% Similarity=0.266 Sum_probs=75.9
Q ss_pred HhhhCCchh-hHhhhhhhhhHHhhH-HHHHHHhCCCCc--EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEcc
Q 003142 502 VFADIGDEQ-SLSQSLSTFSGHLKQ-IGNIISQSTSQS--LVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577 (844)
Q Consensus 502 i~~~ig~~q-~i~~~lstfS~~~~r-l~~il~~a~~p~--LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTH 577 (844)
.+..+|... ......+++|+++++ +..+.+++.+|+ ++||||||+||||.+...+. .+++.|.+.|.| ||+|||
T Consensus 447 ~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~-~~L~~L~~~G~T-vivVtH 524 (916)
T 3pih_A 447 FLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLI-KTLKKLRDLGNT-VIVVEH 524 (916)
T ss_dssp HHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHH-HHHHHTTTTTCE-EEEECC
T ss_pred HHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHH-HHHHHHHhcCCE-EEEEeC
Confidence 455677653 356778899987655 455555666665 99999999999999888886 566778888997 999999
Q ss_pred chhHHhhhccccce------eeeEEEEe
Q 003142 578 HGELKTLKYSNDFF------ENACMEFD 599 (844)
Q Consensus 578 d~el~~~a~~~~~v------~ng~v~fd 599 (844)
|.++...|+++..+ .+|.+.+.
T Consensus 525 d~~~~~~aD~ii~lgpgag~~~G~iv~~ 552 (916)
T 3pih_A 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQ 552 (916)
T ss_dssp CHHHHHTCSEEEEEESSSGGGCSEEEEE
T ss_pred CHHHHHhCCEEEEEcCCcccCCCEEEEe
Confidence 99998889999988 78888764
No 108
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.61 E-value=1.9e-09 Score=127.41 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=33.6
Q ss_pred CCCCcEEEEecC------CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhH
Q 003142 533 STSQSLVLLDEI------GAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581 (844)
Q Consensus 533 a~~p~LLLLDEP------~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el 581 (844)
...|+|+|+||| |+|+|+.....+...+.+++.+..+.+++++||+.++
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~ 198 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI 198 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh
Confidence 356999999999 9999996666665444343444433348889998764
No 109
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.60 E-value=1.9e-08 Score=104.08 Aligned_cols=27 Identities=11% Similarity=0.308 Sum_probs=23.6
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
+.|++++|+||||||||||+|+|.+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 578999999999999999999997654
No 110
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.57 E-value=7.3e-08 Score=117.84 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=75.8
Q ss_pred hhhCCchh-hHhhhhhhhhHHhhH-HHHHHHhCCC--CcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003142 503 FADIGDEQ-SLSQSLSTFSGHLKQ-IGNIISQSTS--QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578 (844)
Q Consensus 503 ~~~ig~~q-~i~~~lstfS~~~~r-l~~il~~a~~--p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd 578 (844)
+..+|+.. .+.....++|+++++ +..+.+++.+ |.|+||||||+||||.+...+. .+++.|++.|.| ||+||||
T Consensus 488 L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~T-VIvVeHd 565 (972)
T 2r6f_A 488 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI-ATLKSMRDLGNT-LIVVEHD 565 (972)
T ss_dssp HHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCE-EEEECCC
T ss_pred hhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHH-HHHHHHHhCCCE-EEEEecC
Confidence 55667653 356778899987655 4445556665 5899999999999998888876 577788889997 9999999
Q ss_pred hhHHhhhccccce------eeeEEEEec
Q 003142 579 GELKTLKYSNDFF------ENACMEFDE 600 (844)
Q Consensus 579 ~el~~~a~~~~~v------~ng~v~fd~ 600 (844)
.++...||++..+ .+|.+.++.
T Consensus 566 l~~i~~ADrIi~LgpgaG~~gG~iv~~G 593 (972)
T 2r6f_A 566 EDTMLAADYLIDIGPGAGIHGGEVVAAG 593 (972)
T ss_dssp HHHHHSCSEEEEECSSSGGGCCSEEEEE
T ss_pred HHHHHhCCEEEEeCCCccCCCCEEEEec
Confidence 9888889988888 678887753
No 111
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.55 E-value=1e-07 Score=115.93 Aligned_cols=96 Identities=21% Similarity=0.167 Sum_probs=76.2
Q ss_pred HhhhCCchh-hHhhhhhhhhHHhhH-HHHHHHhCCCC--cEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEcc
Q 003142 502 VFADIGDEQ-SLSQSLSTFSGHLKQ-IGNIISQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTH 577 (844)
Q Consensus 502 i~~~ig~~q-~i~~~lstfS~~~~r-l~~il~~a~~p--~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTH 577 (844)
.+..+|... .+.+...++|+++++ +..+.+++.+| .|+||||||+||||.+...+. .+++.|++.|.| ||++||
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~-~~l~~L~~~G~T-VIvVeH 439 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALL-SALENLKRGGNS-LFVVEH 439 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHH-HHHHHHHTTTCE-EEEECC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHH-HHHHHHHHcCCE-EEEEcC
Confidence 345677654 367778899987654 55555667777 599999999999999988876 577788999997 999999
Q ss_pred chhHHhhhccccce------eeeEEEEe
Q 003142 578 HGELKTLKYSNDFF------ENACMEFD 599 (844)
Q Consensus 578 d~el~~~a~~~~~v------~ng~v~fd 599 (844)
++++...|+++..+ .+|.+.+.
T Consensus 440 dl~~l~~aD~ii~lgpgaG~~~G~iv~~ 467 (842)
T 2vf7_A 440 DLDVIRRADWLVDVGPEAGEKGGEILYS 467 (842)
T ss_dssp CHHHHTTCSEEEEECSSSGGGCCSEEEE
T ss_pred CHHHHHhCCEEEEeCCCcccCCCEEEEe
Confidence 99988889988888 57777765
No 112
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.55 E-value=2.3e-08 Score=110.69 Aligned_cols=58 Identities=7% Similarity=-0.063 Sum_probs=38.5
Q ss_pred CCCCcEEEEec---CC------CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003142 533 STSQSLVLLDE---IG------AGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591 (844)
Q Consensus 533 a~~p~LLLLDE---P~------sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v 591 (844)
..+|+++|||| |+ .++|+.....++..+.+.+.+.+.+ +|++||......+++....+
T Consensus 275 ~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~-ililde~~~~~r~~~~i~~i 341 (365)
T 1lw7_A 275 EYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVP-YIEIESPSYLDRYNQVKAVI 341 (365)
T ss_dssp HSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCC-CEEEECSSHHHHHHHHHHHH
T ss_pred hcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCC-EEEeCCCCHHHHHHHHHHHH
Confidence 35899999999 65 5889988898887776655666777 88888875555555544433
No 113
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.54 E-value=8.4e-08 Score=117.67 Aligned_cols=95 Identities=22% Similarity=0.188 Sum_probs=73.9
Q ss_pred hhhCCchh-hHhhhhhhhhHHhhH-HHHHHHhCCC--CcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003142 503 FADIGDEQ-SLSQSLSTFSGHLKQ-IGNIISQSTS--QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578 (844)
Q Consensus 503 ~~~ig~~q-~i~~~lstfS~~~~r-l~~il~~a~~--p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd 578 (844)
+..+|... ++.....++|+++++ +..+.+++.+ |.|+||||||+||||.+...+. .+++.|++.|.| ||+|+||
T Consensus 505 L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~-~~L~~Lr~~G~T-VIvVeHd 582 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLI-ETLTRLRDLGNT-LIVVEHD 582 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHH-HHHHHHHHTTCE-EEEECCC
T ss_pred HhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHH-HHHHHHHHcCCE-EEEECCC
Confidence 45566653 356778899987655 4445556666 5899999999999998888876 567778889997 9999999
Q ss_pred hhHHhhhccccce------eeeEEEEe
Q 003142 579 GELKTLKYSNDFF------ENACMEFD 599 (844)
Q Consensus 579 ~el~~~a~~~~~v------~ng~v~fd 599 (844)
.++...||++..+ .+|.+.++
T Consensus 583 l~~i~~ADrIi~Lgp~aG~~gG~iv~~ 609 (993)
T 2ygr_A 583 EDTIEHADWIVDIGPGAGEHGGRIVHS 609 (993)
T ss_dssp HHHHHTCSEEEEECSSSGGGCCSCCEE
T ss_pred HHHHHhCCEEEEecCccccCCCEEEEe
Confidence 9888889988887 56777654
No 114
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.51 E-value=1.5e-07 Score=105.74 Aligned_cols=125 Identities=14% Similarity=0.159 Sum_probs=64.7
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhh-ccc------cccccccccccchhHHHhhhCCch-hhHhhhhh---hhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KSG------LHILSSEYAKVPWFDSVFADIGDE-QSLSQSLS---TFSG 521 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-q~G------~~vpa~~~~~i~~~~~i~~~ig~~-q~i~~~ls---tfS~ 521 (844)
..|++++|+||||+|||||++.++.....+ ..| .|+.............+...++.. +.+..++. .+..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 467899999999999999999775333221 111 222221111111122234445532 22211111 1111
Q ss_pred -H-hhHHHHHHHh--CCCCcEEEEecCCCCCCHHHH------------HHHHHHHHHHHHhcCCeEEEEEccc
Q 003142 522 -H-LKQIGNIISQ--STSQSLVLLDEIGAGTNPLEG------------TALGMSLLEAFAESGSLLTIATTHH 578 (844)
Q Consensus 522 -~-~~rl~~il~~--a~~p~LLLLDEP~sGlDp~~~------------~al~~~Ile~L~~~g~t~vIitTHd 578 (844)
+ ...+..+... ..+|++|++|||++.+|+... ..++..+.+...+.|++ ||+|||.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~git-VIlv~Hv 327 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVA-VVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCE-EEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCE-EEEEEee
Confidence 1 1111222211 257999999999999986322 23333343433456887 9999998
No 115
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.49 E-value=1.6e-07 Score=101.79 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCCchhhHhhhhhHHH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLAVM 480 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l~~ 480 (844)
++++++|+|||||||||+++.|+++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 578999999999999999999976543
No 116
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.48 E-value=7.2e-08 Score=104.25 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=20.2
Q ss_pred CCccceeEEEEecCceEEEEEccCCCCchhhHhhhhhH
Q 003142 441 LAHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 441 ~~~~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
+++.+..+++|. ++|+||||+||||||++|.+.
T Consensus 9 ~~~~~l~~~~~~-----I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 9 HRKSVKKGFEFT-----LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ---------CEE-----EEEEEETTSSHHHHHHHHHC-
T ss_pred CCEEEEcCCCEE-----EEEECCCCCCHHHHHHHHhCC
Confidence 345677777764 599999999999999998654
No 117
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.43 E-value=5e-07 Score=92.78 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=35.5
Q ss_pred CCCcEEEEecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003142 534 TSQSLVLLDEIGAGT--NPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580 (844)
Q Consensus 534 ~~p~LLLLDEP~sGl--Dp~~~~al~~~Ile~L~~~g~t~vIitTHd~e 580 (844)
.+++++++|+|++.. |+.........+.+.+.+.|++ ||+++|...
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~-vi~~~h~~~ 174 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCT-SIFVSQVSV 174 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCE-EEEEEECC-
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCe-EEEEecCCC
Confidence 478999999999887 5545556666777777788887 999999754
No 118
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=3.5e-07 Score=99.65 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=29.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchh
Q 003142 533 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGE 580 (844)
Q Consensus 533 a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~e 580 (844)
..+|.++|||||++ +|+....++.. +++.. ..+++ +|++||+..
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~-~le~~-~~~~~-~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRR-TMEKY-SKNIR-LIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHH-HHHHS-TTTEE-EEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHH-HHHhh-cCCCE-EEEEeCCHH
Confidence 45889999999999 99865555432 33332 23454 899999854
No 119
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.33 E-value=7.3e-08 Score=108.94 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=26.2
Q ss_pred CccceeEEEEecCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 442 AHPVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 442 ~~~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
++.+..+++|. ++|+||||+|||||+++|++..
T Consensus 23 ~~~vl~~vsf~-----I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 23 RKSVKRGFEFT-----LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp TTTCC-CCCEE-----EEEECCTTSSHHHHHHHHTTCC
T ss_pred CEEEecCCCEE-----EEEECCCCCcHHHHHHHHhCCC
Confidence 45677777775 5999999999999999996543
No 120
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.32 E-value=4.7e-07 Score=97.72 Aligned_cols=134 Identities=14% Similarity=0.148 Sum_probs=71.7
Q ss_pred ecCceEEEEEccCCCCchhhHhhhhhHHHhhccc---cccccccccccchhHHH---hhhCCchhhHhhhhhhhhHHhhH
Q 003142 452 ARKTRVLVITGPNTGGKTICLKTVGLAVMMAKSG---LHILSSEYAKVPWFDSV---FADIGDEQSLSQSLSTFSGHLKQ 525 (844)
Q Consensus 452 ~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G---~~vpa~~~~~i~~~~~i---~~~ig~~q~i~~~lstfS~~~~r 525 (844)
...+++++|+||||+||||+++.|+..... ..| .++.+ ........+++ ...++..-.. .++. ..
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~-----~~~~--~~ 172 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITT-DTYRIAAVEQLKTYAELLQAPLEV-----CYTK--EE 172 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEEC-CCSSTTHHHHHHHHHTTTTCCCCB-----CSSH--HH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEec-CcccchHHHHHHHHHHhcCCCeEe-----cCCH--HH
Confidence 345789999999999999999999765432 124 23333 22122222221 1112211000 0111 12
Q ss_pred HHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH---hcCCeEEEE-Eccch-hHHhhhccccceeeeEEEE
Q 003142 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA---ESGSLLTIA-TTHHG-ELKTLKYSNDFFENACMEF 598 (844)
Q Consensus 526 l~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~---~~g~t~vIi-tTHd~-el~~~a~~~~~v~ng~v~f 598 (844)
+..+++.+.+++++|+| |+|+|+..... +..+...+. ..+.. +++ +||.. ++..+++....+..+.+.+
T Consensus 173 l~~al~~~~~~dlvIiD--T~G~~~~~~~~-~~el~~~l~~~~~~~~~-lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 173 FQQAKELFSEYDHVFVD--TAGRNFKDPQY-IDELKETIPFESSIQSF-LVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHHHHHHGGGSSEEEEE--CCCCCTTSHHH-HHHHHHHSCCCTTEEEE-EEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HHHHHHHhcCCCEEEEe--CCCCChhhHHH-HHHHHHHHhhcCCCeEE-EEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23333445789999999 88999855433 334444332 22333 444 58874 4556676655555555655
No 121
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.31 E-value=1e-06 Score=87.95 Aligned_cols=75 Identities=16% Similarity=0.101 Sum_probs=54.4
Q ss_pred hhhhhhHHhhHHHHHH-HhC----CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcccc
Q 003142 515 SLSTFSGHLKQIGNII-SQS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSND 589 (844)
Q Consensus 515 ~lstfS~~~~rl~~il-~~a----~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~ 589 (844)
.++.+||+++++..+. .++ .+|+++|||||++|||+.....+.. ++..+.. +.+ +|++||+..+..+|+++.
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~-~l~~~~~-~~~-~ivith~~~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVAD-LIKESSK-ESQ-FIVITLRDVMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH-HHHHHTT-TSE-EEEECSCHHHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHH-HHHHhcc-CCE-EEEEEecHHHHHhCCEEE
Confidence 4556788776654443 332 5679999999999999988777764 5555543 455 889999988888888877
Q ss_pred cee
Q 003142 590 FFE 592 (844)
Q Consensus 590 ~v~ 592 (844)
.+.
T Consensus 138 ~v~ 140 (173)
T 3kta_B 138 GVS 140 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 122
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.23 E-value=8.5e-07 Score=102.74 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=77.8
Q ss_pred hhhhh-hHHh-hHHHHHHHhCCCC--cEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccc
Q 003142 515 SLSTF-SGHL-KQIGNIISQSTSQ--SLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590 (844)
Q Consensus 515 ~lstf-S~~~-~rl~~il~~a~~p--~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~ 590 (844)
.++.+ |+++ +++..+.+++.+| ++|||||||+|+|+.....+. .++..+.+ |.+ ||++||++++..+|+++..
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~-~~l~~~~~-~~~-vi~itH~~~~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVA-EQLSRLAD-TRQ-VLVVTHLAQIAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHH-HHHHHHHH-HSE-EEEECCCHHHHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHH-HHHHHHhC-CCE-EEEEecCHHHHHhCCEEEE
Confidence 34455 7654 5566666677888 999999999999998777776 45566666 776 9999999999888988887
Q ss_pred eeeeEEEEecccceeeEEeecCCCCCchHHHHHHHcC--CCHHHHHHHHHHH
Q 003142 591 FENACMEFDEVKLKPTYKILWGVPGRSSAINIAERLG--LPGIVVQNARQLY 640 (844)
Q Consensus 591 v~ng~v~fd~~~l~p~y~l~~G~~g~S~a~~iA~~~g--l~~~ii~~A~~~l 640 (844)
+.++.. ++.+... .. .......-.+|++.++ ..+..+..|++++
T Consensus 470 ~~~~~~--~~~~~~~-~~---~l~~~~~~~ei~~~~~g~~~~~~~~~a~~ll 515 (517)
T 4ad8_A 470 VEKQVE--DGRTVSH-VR---LLTGDERLEEIARMLSGNTSEAALEHARELL 515 (517)
T ss_dssp EECCEE--TTEECCE-EE---ECCSHHHHHHHHHHSSSSCCHHHHHHHHHHH
T ss_pred Eecccc--CCceeee-ee---eCCcchHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 765532 1111111 00 1122223457777774 3566667776655
No 123
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.21 E-value=7.4e-06 Score=90.40 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=63.3
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhh-ccccccccccccccchhHHHhhhCCch-hhHhhhhhhhh-HHhhHHHHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KSGLHILSSEYAKVPWFDSVFADIGDE-QSLSQSLSTFS-GHLKQIGNI 529 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-q~G~~vpa~~~~~i~~~~~i~~~ig~~-q~i~~~lstfS-~~~~rl~~i 529 (844)
+.|+++.|.||||+|||||+..++...... ....|+.. +...-. .....+|.. +.+.. ....+ .+...+...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~-E~~~~~---~~a~~lG~~~~~l~i-~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA-EHALDP---EYAKKLGVDTDSLLV-SQPDTGEQALEIADM 133 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES-SCCCCH---HHHHHTTCCGGGCEE-ECCSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC-CCCcCH---HHHHHcCCCHHHeEE-ecCCCHHHHHHHHHH
Confidence 367899999999999999988875433221 12233433 211111 112233322 11100 00011 122222222
Q ss_pred HHhCCCCcEEEEecCCCCCC----------H---HH---HHHHHHHHHHHHHhcCCeEEEEEccch
Q 003142 530 ISQSTSQSLVLLDEIGAGTN----------P---LE---GTALGMSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 530 l~~a~~p~LLLLDEP~sGlD----------p---~~---~~al~~~Ile~L~~~g~t~vIitTHd~ 579 (844)
+....+|++|++|+|++.+. + .. .......+...+.+.+++ ||+++|..
T Consensus 134 l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~t-VI~inh~~ 198 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTT-AIFINELR 198 (349)
T ss_dssp HHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCE-EEEEEECC
T ss_pred HHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCE-EEEEeccc
Confidence 22345699999999999883 2 11 122223344444677887 99999964
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.19 E-value=2.6e-07 Score=104.48 Aligned_cols=47 Identities=6% Similarity=0.066 Sum_probs=37.6
Q ss_pred HhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003142 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH 578 (844)
Q Consensus 531 ~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd 578 (844)
.+....+++++|+|+..+.+.+...+...|.+.|...|.. |+.+|.+
T Consensus 172 ~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~-I~~is~~ 218 (427)
T 2qag_B 172 KLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQ-IYQFPTD 218 (427)
T ss_dssp HTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCC-CCCCC--
T ss_pred HHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCc-EEecCCC
Confidence 3446889999999999999988888877777778888987 7877765
No 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.11 E-value=2.7e-06 Score=93.14 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=24.1
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
.+|++++|+|||||||||+++.|++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999997654
No 126
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.05 E-value=3.5e-07 Score=89.84 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=32.8
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
+..+.++++|. .+|++++|+||||||||||+|+|+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34677788888 889999999999999999999997654
No 127
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.03 E-value=6.7e-07 Score=99.14 Aligned_cols=132 Identities=13% Similarity=0.068 Sum_probs=65.8
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCch--hhHhhhhhhhhH
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDE--QSLSQSLSTFSG 521 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~--q~i~~~lstfS~ 521 (844)
++.++++. ..|++++|+|||||||||||++|.++.- ...|..... ....+... .....++.. +... +.. +.
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-~~~g~I~ie-~~~e~~~~-~~~~~v~~v~~q~~~--~~~-~~ 237 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-FDQRLITIE-DVPELFLP-DHPNHVHLFYPSEAK--EEE-NA 237 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-TTSCEEEEE-SSSCCCCT-TCSSEEEEECC------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-CCceEEEEC-CccccCcc-ccCCEEEEeecCccc--ccc-cc
Confidence 34777777 7888999999999999999999954321 122221111 00011000 000000000 0000 000 01
Q ss_pred HhhHHHH-HHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccce
Q 003142 522 HLKQIGN-IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDFF 591 (844)
Q Consensus 522 ~~~rl~~-il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~v 591 (844)
+...... ...+...|+.+++||+.. . .. ..+++.+.....+ ++.++|.......+++...+
T Consensus 238 ~~t~~~~i~~~l~~~pd~~l~~e~r~---~----~~-~~~l~~l~~g~~~-~l~t~H~~~~~~~~~Rl~~l 299 (361)
T 2gza_A 238 PVTAATLLRSCLRMKPTRILLAELRG---G----EA-YDFINVAASGHGG-SITSCHAGSCELTFERLALM 299 (361)
T ss_dssp -CCHHHHHHHHTTSCCSEEEESCCCS---T----HH-HHHHHHHHTTCCS-CEEEEECSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhcCCCEEEEcCchH---H----HH-HHHHHHHhcCCCe-EEEEECCCCHHHHHHHHHHH
Confidence 1111111 123345899999999953 2 12 2345555544444 78999987655555554443
No 128
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.01 E-value=1e-06 Score=91.66 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+.+++|+|||||||||++|+|+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999996
No 129
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.00 E-value=7.3e-06 Score=90.89 Aligned_cols=73 Identities=18% Similarity=0.087 Sum_probs=51.4
Q ss_pred hhhhHHhhHHHH-------HHHhCCC-CcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccc
Q 003142 517 STFSGHLKQIGN-------IISQSTS-QSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSN 588 (844)
Q Consensus 517 stfS~~~~rl~~-------il~~a~~-p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~ 588 (844)
+.+|+++++... +.+++.+ |+++|||||++|+|+.....+.. ++..+. .+.+ ||+|||+.++..+|+++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~-~~~~-vi~~th~~~~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAE-IFRKVK-SIPQ-MIIITHHRELEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHH-HHHHCC-SCSE-EEEEESCGGGGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHH-HHHHhc-cCCe-EEEEEChHHHHhhCCEE
Confidence 456776655332 2234577 99999999999999977777654 344443 3455 89999998877788777
Q ss_pred ccee
Q 003142 589 DFFE 592 (844)
Q Consensus 589 ~~v~ 592 (844)
..+.
T Consensus 356 ~~l~ 359 (371)
T 3auy_A 356 INVK 359 (371)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 130
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.99 E-value=5.3e-06 Score=93.70 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=55.4
Q ss_pred hhhhhHHhhHHHHH-HHhC----CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhccccc
Q 003142 516 LSTFSGHLKQIGNI-ISQS----TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYSNDF 590 (844)
Q Consensus 516 lstfS~~~~rl~~i-l~~a----~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~~~~ 590 (844)
++.+|+++++...+ +.++ .+|+++|||||+++||+.....+.. ++..+...+.+ +|+|||+..+...|+++..
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~-~l~~~~~~~~~-~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAA-YIRRHRNPDLQ-FIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHH-HHHHHCBTTBE-EEEECSCHHHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHH-HHHHHhcCCCE-EEEEECCHHHHHhCCEEEE
Confidence 45678877655444 4444 6899999999999999977777654 44555444666 9999999888888887776
Q ss_pred ee
Q 003142 591 FE 592 (844)
Q Consensus 591 v~ 592 (844)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 131
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.87 E-value=1.3e-05 Score=91.90 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=29.1
Q ss_pred eeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH
Q 003142 446 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM 480 (844)
Q Consensus 446 ~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~ 480 (844)
..+++|. ..|.+++|+||||||||||+++|+++..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 3456676 6789999999999999999999976543
No 132
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.85 E-value=1.4e-05 Score=86.07 Aligned_cols=33 Identities=15% Similarity=0.140 Sum_probs=27.0
Q ss_pred eEEEEecCceEEEEEccCCCCchhhHhhhhhHHH
Q 003142 447 IDIFIARKTRVLVITGPNTGGKTICLKTVGLAVM 480 (844)
Q Consensus 447 ~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~ 480 (844)
.++++. .+++++|+||||+||||+++.+++...
T Consensus 91 ~~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp CCCCCC-SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred ceeecC-CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555 789999999999999999999976543
No 133
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.78 E-value=8.9e-06 Score=81.38 Aligned_cols=43 Identities=7% Similarity=-0.198 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 003142 526 IGNIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGS 569 (844)
Q Consensus 526 l~~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~ 569 (844)
+..+.+.+.++.++++|||+|++|+.....+...|.+. ...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~-~~~~~ 201 (210)
T 1pui_A 159 LNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW-FSEMQ 201 (210)
T ss_dssp HHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH-HC---
T ss_pred HHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH-Hhhcc
Confidence 34555566777788999999999997777776555544 44443
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.77 E-value=3.8e-05 Score=83.98 Aligned_cols=121 Identities=12% Similarity=0.024 Sum_probs=61.9
Q ss_pred EEEEEccCCCCchhhHhhhhhHHHhh-cc-ccccccccc-cccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhC
Q 003142 457 VLVITGPNTGGKTICLKTVGLAVMMA-KS-GLHILSSEY-AKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQS 533 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~l~~~~-q~-G~~vpa~~~-~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a 533 (844)
.++|+||+|+||||+++.++...... .. -.++.+... ....++..++..++.... .... ....-...+...+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~-~~~~~~~~l~~~l~~~ 123 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-RRGL-SRDEFLALLVEHLRER 123 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-SSCC-CHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-CCCC-CHHHHHHHHHHHHhhc
Confidence 68999999999999999986433211 01 112222111 112233344444432100 0000 0111122333334445
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh---cCCeEEEEEccchhHH
Q 003142 534 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE---SGSLLTIATTHHGELK 582 (844)
Q Consensus 534 ~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~---~g~t~vIitTHd~el~ 582 (844)
..|.+|+|||+... |+.....+. .+++.+.. .+.+ +|++||+.++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~-~~~~~~~~~~~~~~~-iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFI-RLGQEADKLGAFRIA-LVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHH-HHTTCHHHHSSCCEE-EEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHH-HHHHhCCCCCcCCEE-EEEEECCchHH
Confidence 67899999999766 653333332 23333333 3555 88999987654
No 135
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.76 E-value=8.6e-06 Score=91.95 Aligned_cols=123 Identities=18% Similarity=0.154 Sum_probs=69.9
Q ss_pred eeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH----------Hhhccccccccccccccc----------------h
Q 003142 446 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV----------MMAKSGLHILSSEYAKVP----------------W 498 (844)
Q Consensus 446 ~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~----------~~~q~G~~vpa~~~~~i~----------------~ 498 (844)
-.++++. ..+..++|+||||+||||||++|.... +.+..|. ++......+. +
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~-V~~~~~~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV-VEVSEEERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEE-EECSSSCEEEEEECCCCCCCGGGSCCS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeE-EEecCcceEEEEeccccccchhhhhhh
Confidence 3567777 667889999999999999999996541 1111111 1000000000 0
Q ss_pred hHHHhh----------hCCchhhHhhhhhhhhHHhhHHHHHH-HhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 003142 499 FDSVFA----------DIGDEQSLSQSLSTFSGHLKQIGNII-SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAES 567 (844)
Q Consensus 499 ~~~i~~----------~ig~~q~i~~~lstfS~~~~rl~~il-~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~ 567 (844)
....+. .++.. ...+..++..++++..+. +++..|.+|++ +++|+... .....+.+.+...
T Consensus 226 ~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~ 297 (416)
T 1udx_A 226 GLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALARE 297 (416)
T ss_dssp CHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhc
Confidence 000111 01111 234456677666665543 35678999999 99999765 4445566666666
Q ss_pred CCeEEEEE-ccc
Q 003142 568 GSLLTIAT-THH 578 (844)
Q Consensus 568 g~t~vIit-THd 578 (844)
+.+ ++++ +|.
T Consensus 298 g~~-vi~iSA~~ 308 (416)
T 1udx_A 298 GLA-VLPVSALT 308 (416)
T ss_dssp TSC-EEECCTTT
T ss_pred CCe-EEEEECCC
Confidence 776 5544 454
No 136
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.71 E-value=2.4e-05 Score=86.68 Aligned_cols=74 Identities=11% Similarity=-0.041 Sum_probs=53.8
Q ss_pred hhhHHhh-HHHHHHHhC---------CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhhhcc
Q 003142 518 TFSGHLK-QIGNIISQS---------TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTLKYS 587 (844)
Q Consensus 518 tfS~~~~-rl~~il~~a---------~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~a~~ 587 (844)
.+|++++ ++..+++++ .+|++|||||||++||+.....+... +..+ +.+ +|++||. +. ++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~-l~~~---~qt-~i~~th~-~~--~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDL-AASV---PQA-IVTGTEL-AP--GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHH-HHHS---SEE-EEEESSC-CT--TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHH-HHhc---CcE-EEEEEec-cc--cCCE
Confidence 4676654 455556666 79999999999999999776666543 3332 345 8999995 33 7888
Q ss_pred ccceeeeEEEEe
Q 003142 588 NDFFENACMEFD 599 (844)
Q Consensus 588 ~~~v~ng~v~fd 599 (844)
+..+.+|.+...
T Consensus 337 i~~l~~G~i~~~ 348 (359)
T 2o5v_A 337 TLRAQAGRFTPV 348 (359)
T ss_dssp EEEEETTEEEEC
T ss_pred EEEEECCEEEec
Confidence 888888988654
No 137
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.70 E-value=1.3e-05 Score=80.18 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.3
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..|++++|+||||||||||+++|++.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999999999765
No 138
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.66 E-value=5.8e-05 Score=85.71 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=56.7
Q ss_pred eEEEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCC-
Q 003142 456 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQST- 534 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~- 534 (844)
..++|.||+|+|||||++.|+........+..+ ..+.. ..+... +...+ ... ....+.....
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v-----~~v~~-~~~~~~------~~~~~---~~~--~~~~~~~~~~~ 193 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRV-----MYITS-EKFLND------LVDSM---KEG--KLNEFREKYRK 193 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCE-----EEEEH-HHHHHH------HHHHH---HTT--CHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeE-----EEeeH-HHHHHH------HHHHH---Hcc--cHHHHHHHhcC
Confidence 447999999999999999997543221111110 00110 001000 00000 000 0111222224
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003142 535 SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 535 ~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~ 579 (844)
++++|+|||+....+..........+++.+.+.|.. +|++||..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~-iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQ-IVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCE-EEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCe-EEEEECCC
Confidence 789999999977666422233333566666777886 88899873
No 139
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.65 E-value=1.3e-05 Score=82.45 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=20.1
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhh-hH
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVG-LA 478 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig-~l 478 (844)
...+++|. ..|++++|+|||||||||++++|. +.
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 34566676 678999999999999999999997 55
No 140
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.64 E-value=9.4e-06 Score=87.31 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCCchhhHhhhhhH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.+.+++|+||+|||||||.+.|...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998644
No 141
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.64 E-value=0.00012 Score=83.99 Aligned_cols=102 Identities=16% Similarity=0.241 Sum_probs=52.5
Q ss_pred EEEEccCCCCchhhHhhhhhHHHhhccccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhCCCCc
Q 003142 458 LVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQSTSQS 537 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a~~p~ 537 (844)
++|+||+|+|||||.|.|+.-. +.++.. +.. ..+...+ .. .+....+-....+....|.
T Consensus 52 vLL~GppGtGKT~Laraia~~~-----~~~f~~-----is~-~~~~~~~---------~g-~~~~~~r~lf~~A~~~~p~ 110 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA-----NVPFFH-----ISG-SDFVELF---------VG-VGAARVRDLFAQAKAHAPC 110 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-----TCCEEE-----EEG-GGTTTCC---------TT-HHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCCeee-----CCH-HHHHHHH---------hc-ccHHHHHHHHHHHHhcCCC
Confidence 7899999999999999997532 211110 000 0000000 00 0111111111222345799
Q ss_pred EEEEecCC----------CCCCHHHHHHHHHHHHHHHH----hcCCeEEEEEccchhHH
Q 003142 538 LVLLDEIG----------AGTNPLEGTALGMSLLEAFA----ESGSLLTIATTHHGELK 582 (844)
Q Consensus 538 LLLLDEP~----------sGlDp~~~~al~~~Ile~L~----~~g~t~vIitTHd~el~ 582 (844)
+|+|||+. .|.|+.. ......++..+. ..+.. ||.+||..+..
T Consensus 111 ILfIDEid~l~~~r~~~~~g~~~~~-~~~l~~LL~~ld~~~~~~~vi-VIaaTn~~~~L 167 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAGLGGGHDER-EQTLNQLLVEMDGFDSKEGII-VMAATNRPDIL 167 (476)
T ss_dssp EEEEETGGGTCCC---------CHH-HHHHHHHHHHHHHSCGGGTEE-EEEEESCGGGS
T ss_pred EEEEechhhhhhhcccccCcCcHHH-HHHHHHHHHHHhccCCCCCEE-EEEecCChhhh
Confidence 99999993 3556533 333345665553 23554 89999987654
No 142
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.62 E-value=0.00022 Score=78.84 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.7
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
+.|+++.|+||||+|||||+..++..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999998644
No 143
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.60 E-value=6.5e-05 Score=81.40 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.7
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
..+++++|+||||+||||+++.|+...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 567899999999999999999997654
No 144
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.57 E-value=0.00025 Score=80.74 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=24.5
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMM 481 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~ 481 (844)
..|++++|.||+|+|||||+..++.....
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999998655443
No 145
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.51 E-value=0.0002 Score=78.62 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=64.4
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhc-------ccccccccccc-ccchhHHHhhhCCchh-hHhhhh---hhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-------SGLHILSSEYA-KVPWFDSVFADIGDEQ-SLSQSL---STFS 520 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-------~G~~vpa~~~~-~i~~~~~i~~~ig~~q-~i~~~l---stfS 520 (844)
+.|+++.|.||+|+|||||+..++.....+. ...|+.. +.. ....+.+....++... .+..++ ..++
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~-E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDT-ENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEES-SSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEEC-CCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 4678999999999999999998865433311 1123333 221 1111222333444321 111111 0111
Q ss_pred H-HhhH----HHHHHHhC-CCCcEEEEecCCCCCCHH--------H----HHHHHHHHHHHHHhcCCeEEEEEccch
Q 003142 521 G-HLKQ----IGNIISQS-TSQSLVLLDEIGAGTNPL--------E----GTALGMSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 521 ~-~~~r----l~~il~~a-~~p~LLLLDEP~sGlDp~--------~----~~al~~~Ile~L~~~g~t~vIitTHd~ 579 (844)
. +... +...+... .++++|++|.+++-..+. + ...+...+.....+.+++ ||+++|..
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~-Vi~~nq~~ 274 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVA-VFVTNQMT 274 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEECC-
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEEeece
Confidence 1 1211 11222222 678999999998765431 1 223333444444567887 89998864
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.50 E-value=2.1e-05 Score=85.67 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=60.1
Q ss_pred CceEEEEEccCCCCchhhHhhhhhHHHhh---cc-cccccccc-ccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLAVMMA---KS-GLHILSSE-YAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~---q~-G~~vpa~~-~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~ 528 (844)
.+..++|+||+|+|||||++.++...... .. ..++.+.. ......+..++..++..... .+. ....-...+..
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~-~~~-~~~~~~~~l~~ 121 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPF-TGL-SIAELYRRLVK 121 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCS-SSC-CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCC-CHHHHHHHHHH
Confidence 35678999999999999999986433211 00 11122100 00111222333333321000 000 01111233344
Q ss_pred HHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH---hcCCeEEEEEccchhHH
Q 003142 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA---ESGSLLTIATTHHGELK 582 (844)
Q Consensus 529 il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~---~~g~t~vIitTHd~el~ 582 (844)
.+.....|.+|+|||+....+... ..+...+++.+. ..+.+ +|++||+..+.
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~-~~~l~~l~~~~~~~~~~~~~-~I~~~~~~~~~ 176 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYN-DDILYKLSRINSEVNKSKIS-FIGITNDVKFV 176 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSC-STHHHHHHHHHHSCCC--EE-EEEEESCGGGG
T ss_pred HHhccCCeEEEEEcChhhhhccCc-CHHHHHHhhchhhcCCCeEE-EEEEECCCChH
Confidence 444445589999999865442210 122334555442 22454 89999987643
No 147
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.50 E-value=4.8e-05 Score=87.27 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=31.8
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHHH
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAVM 480 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~~ 480 (844)
..++.+++|. .. ++++|+|||||||||||++|+++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 3468899999 66 9999999999999999999977643
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.50 E-value=4.4e-05 Score=77.28 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=24.4
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVM 480 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~ 480 (844)
..|.+++|+||||||||||+++|+++.-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999976543
No 149
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.47 E-value=0.00015 Score=83.83 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=20.4
Q ss_pred CceEEEEEccCCCCchhhHhhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+..++|.|++||||||+|++|..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999853
No 150
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.47 E-value=3.3e-05 Score=76.83 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.3
Q ss_pred ceEEEEEccCCCCchhhHhhhhhH
Q 003142 455 TRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
+++++|+|||||||||++|+|.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999654
No 151
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.40 E-value=4.5e-05 Score=76.89 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=21.1
Q ss_pred CceEEEEEccCCCCchhhHhhhhhH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.|++++|+||||||||||+++|.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4678999999999999999999654
No 152
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.36 E-value=8.2e-05 Score=73.11 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=23.9
Q ss_pred EEEEe-cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 448 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 448 disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
++++. .+| +++|+|||||||||+|++|..+
T Consensus 19 ~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 19 KVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp CEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 44555 344 8999999999999999999643
No 153
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.36 E-value=0.0001 Score=73.70 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.9
Q ss_pred eEEEEEccCCCCchhhHhhhhhH
Q 003142 456 RVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..+.|+||+|+|||||++.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999998643
No 154
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.35 E-value=6.8e-05 Score=74.08 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=22.9
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..|++++|+|||||||||++|+|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999999999653
No 155
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.34 E-value=0.00035 Score=70.64 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=20.6
Q ss_pred ceEEEEEccCCCCchhhHhhhhhH
Q 003142 455 TRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
+..++|+||+|+||||+++.++..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998643
No 156
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.29 E-value=0.00081 Score=76.85 Aligned_cols=21 Identities=24% Similarity=0.223 Sum_probs=18.8
Q ss_pred EEEEccCCCCchhhHhhhhhH
Q 003142 458 LVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~l 478 (844)
++|+||+|+||||+.+.++..
T Consensus 204 ~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp EEEESCTTTTTHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 589999999999999998654
No 157
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.28 E-value=0.00032 Score=79.51 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=22.5
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..+.+++++||||+||||++..|+..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999998654
No 158
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.20 E-value=0.00035 Score=75.86 Aligned_cols=125 Identities=12% Similarity=0.097 Sum_probs=62.9
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhh-------cccccccccccc-ccchhHHHhhhCCchh-hHhhhh---hhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-------KSGLHILSSEYA-KVPWFDSVFADIGDEQ-SLSQSL---STFS 520 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-------q~G~~vpa~~~~-~i~~~~~i~~~ig~~q-~i~~~l---stfS 520 (844)
+.|+++.|.||+|+|||||+..++...... ....|+.. +.. ....+.+....++... .+..++ ..++
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~-e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDT-EGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES-SSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEEC-CCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 467899999999999999999886443222 11133333 221 1111222333444321 111111 1112
Q ss_pred H-HhhH-HHHHHHh---CCCCcEEEEecCCCCCCH--------HH----HHHHHHHHHHHHHhcCCeEEEEEccch
Q 003142 521 G-HLKQ-IGNIISQ---STSQSLVLLDEIGAGTNP--------LE----GTALGMSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 521 ~-~~~r-l~~il~~---a~~p~LLLLDEP~sGlDp--------~~----~~al~~~Ile~L~~~g~t~vIitTHd~ 579 (844)
. ++.. +..+... ..++++|++|.+++-... .+ ...+...+.....+.+++ ||+++|..
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~-Vi~~nq~~ 258 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIA-VIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEEEC-
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEEccee
Confidence 2 1111 1222222 267999999999865432 11 123333444444556887 88888854
No 159
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.20 E-value=0.00033 Score=75.44 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.0
Q ss_pred eEEEEEccCCCCchhhHhhhhhH
Q 003142 456 RVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..+.|+||+|+|||||++.|+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999643
No 160
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.20 E-value=0.0016 Score=79.86 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=19.7
Q ss_pred EEEEEccCCCCchhhHhhhhhHH
Q 003142 457 VLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
-++|+||+|+||||+++.++...
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 36899999999999999996543
No 161
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.17 E-value=0.00014 Score=71.93 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCCchhhHhhhhhH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.|++++|+||||||||||++.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4689999999999999999998653
No 162
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.15 E-value=0.00022 Score=78.43 Aligned_cols=115 Identities=17% Similarity=0.058 Sum_probs=56.8
Q ss_pred eEEEEEccCCCCchhhHhhhhhHHHhhccccccccc-cccccchhH------HHhhhCCchhhHhhhhhhhhHHhhHHHH
Q 003142 456 RVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSS-EYAKVPWFD------SVFADIGDEQSLSQSLSTFSGHLKQIGN 528 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~-~~~~i~~~~------~i~~~ig~~q~i~~~lstfS~~~~rl~~ 528 (844)
..++|+|+||+|||||++.+.+... ..+. .|.. ....+..+. .++..-|..+ ......+....+...
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~--~~~~-~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~---~~~~~~~~~~~~~~~ 241 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKP--EIAS-YPFTTRGINVGQFEDGYFRYQIIDTPGLLD---RPISERNEIEKQAIL 241 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCC--EEEC-CTTCSSCEEEEEEEETTEEEEEEECTTTSS---SCSTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC--ccCC-CCCeeeceeEEEEEecCceEEEEeCCCccc---cchhhhhHHHHHHHH
Confidence 4589999999999999999854221 1110 1110 000111100 0111111111 111122222222222
Q ss_pred HHHhCCCCcEEEEe-cCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEc--cch
Q 003142 529 IISQSTSQSLVLLD-EIGAGTNPLEGTALGMSLLEAFAESGSLLTIATT--HHG 579 (844)
Q Consensus 529 il~~a~~p~LLLLD-EP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitT--Hd~ 579 (844)
.+....+.-|+++| +++.|+|+.+...+...+.... . +.+ +|++. ||.
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~-~~p-iilV~NK~Dl 292 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-K-DLP-FLVVINKIDV 292 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-T-TSC-EEEEECCTTT
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-C-CCC-EEEEEECccc
Confidence 33334567789999 9999999866655544443321 1 566 55555 775
No 163
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.15 E-value=0.00024 Score=86.22 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=32.4
Q ss_pred HhCCCCcEEEEecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEE-Eccchh-HHhhhc
Q 003142 531 SQSTSQSLVLLDEIGA-GTNPLEGTALGMSLLEAFAESGSLLTIA-TTHHGE-LKTLKY 586 (844)
Q Consensus 531 ~~a~~p~LLLLDEP~s-GlDp~~~~al~~~Ile~L~~~g~t~vIi-tTHd~e-l~~~a~ 586 (844)
..+.++++|+|||+.. ++|......+...+... .....+ +++ .||+.+ +..+..
T Consensus 204 ~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~-~~~~~i-Il~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 204 HDLSRYSCIILDEAHERTLATDILMGLLKQVVKR-RPDLKI-IIMSATLDAEKFQRYFN 260 (773)
T ss_dssp TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHH-CTTCEE-EEEESCSCCHHHHHHTT
T ss_pred ccccCCCEEEecCccccccchHHHHHHHHHHHHh-CCCceE-EEEeccccHHHHHHHhc
Confidence 3578899999999985 88875444444444322 222333 555 489854 334444
No 164
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.14 E-value=0.00015 Score=71.83 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
|++++|+|||||||||++|+|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999964
No 165
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.13 E-value=0.00018 Score=72.28 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.7
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..|++++|+|||||||||++|+|+..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999999654
No 166
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.07 E-value=0.0012 Score=69.96 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+..++|.||+|+||||+.+.++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45689999999999999999864
No 167
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.03 E-value=0.00023 Score=76.76 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.1
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..|.+++|+||||||||||+++|.++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999654
No 168
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.97 E-value=0.00026 Score=70.99 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=22.1
Q ss_pred CccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhh
Q 003142 442 AHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 442 ~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..+...+++|. ..+++++|+||+||||||+.+.|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45788899999 7788999999999999999999863
No 169
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.97 E-value=0.00028 Score=70.33 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCCchhhHhhhhhH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.|.+++|+|||||||||+++.|...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5688999999999999999999654
No 170
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.93 E-value=0.0021 Score=69.97 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=27.5
Q ss_pred eEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 447 IDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 447 ~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
.+++|. .++++++|+||||+||||++..|+...
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456666 678999999999999999999997544
No 171
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.91 E-value=0.00041 Score=76.78 Aligned_cols=33 Identities=30% Similarity=0.199 Sum_probs=26.8
Q ss_pred eeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 446 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 446 ~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
..++++. .+| +++|+||||+||||+|++|.++.
T Consensus 17 ~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 17 LAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp CCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 3556666 455 99999999999999999997654
No 172
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.91 E-value=0.00015 Score=79.48 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=31.2
Q ss_pred ccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 443 HPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 443 ~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
..+..++++. ..|.+++|+|||||||||||++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3466777777 778999999999999999999997654
No 173
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.91 E-value=0.00034 Score=70.89 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.4
Q ss_pred cCceEEEEEccCCCCchhhHhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..|++++|+|||||||||+++.|..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHh
Confidence 4678999999999999999999854
No 174
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.87 E-value=0.0028 Score=61.05 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=19.7
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
...++|+||.|+||||+++.++.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999854
No 175
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.86 E-value=0.0033 Score=69.38 Aligned_cols=121 Identities=22% Similarity=0.203 Sum_probs=60.9
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhh-ccccccccccccccchhHHHhhhCCchh-hHh-hhhhhhhHHhhHHHHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KSGLHILSSEYAKVPWFDSVFADIGDEQ-SLS-QSLSTFSGHLKQIGNI 529 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-q~G~~vpa~~~~~i~~~~~i~~~ig~~q-~i~-~~lstfS~~~~rl~~i 529 (844)
+.|+++.|.||+|+|||||...++...... ....++.. +...-+ .....+|... .+. ....+ ..+...+...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~-E~s~~~---~~a~~~g~~~~~l~i~~~~~-~e~~~~~~~~ 135 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA-EHALDP---IYARKLGVDIDNLLCSQPDT-GEQALEICDA 135 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES-SCCCCH---HHHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC-CCCccH---HHHHHcCCChhheeeeCCCC-HHHHHHHHHH
Confidence 367899999999999999988875433221 12233433 211111 1122333221 000 00001 1112222222
Q ss_pred HHhCCCCcEEEEecCCCCCCHHH----------------HHHHHHHHHHHHHhcCCeEEEEEccch
Q 003142 530 ISQSTSQSLVLLDEIGAGTNPLE----------------GTALGMSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 530 l~~a~~p~LLLLDEP~sGlDp~~----------------~~al~~~Ile~L~~~g~t~vIitTHd~ 579 (844)
+.....+++|++|.++.-....+ ...+...+...+.+.+++ ||+++|..
T Consensus 136 l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~-VI~~nq~~ 200 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL-LIFINQIR 200 (356)
T ss_dssp HHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCE-EEEEEC--
T ss_pred HHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCE-EEEEeccc
Confidence 22236789999999988663211 122233444445677887 89998863
No 176
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.84 E-value=0.00061 Score=65.73 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCCchhhHhhhhhH
Q 003142 455 TRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..+.+|+||||+||||+|.+|...
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999999999643
No 177
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.83 E-value=0.00044 Score=71.13 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.3
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..|.+++|.|||||||||++++|++.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999999999764
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.83 E-value=0.0005 Score=68.95 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.7
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
..|.+++|+|||||||||+++.|+...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999997544
No 179
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.79 E-value=0.00042 Score=67.19 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.5
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+.+++|+|||||||||+++.|+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999964
No 180
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.78 E-value=0.00056 Score=66.62 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCCchhhHhhhhhH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.|.+++|+|||||||||+++.|+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4688999999999999999998653
No 181
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.77 E-value=0.00061 Score=74.09 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+..++|+||.|+||||+++.++.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999864
No 182
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.76 E-value=0.0018 Score=64.63 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.5
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..++|+||.|+||||+++.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999854
No 183
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.75 E-value=0.00057 Score=77.13 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=26.7
Q ss_pred ceeEEEEecCceEEEEEccCCCCchhhHhhhhhH
Q 003142 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 445 V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
++.++ +..++.+++|+|||||||||||++|.+.
T Consensus 158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 45555 4567789999999999999999998654
No 184
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.70 E-value=0.0021 Score=69.32 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.6
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
+.|+++.|.||+|+|||||...++.-
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999888643
No 185
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.65 E-value=0.003 Score=60.91 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..++|+||.|+||||+++.++.
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999854
No 186
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.63 E-value=0.0023 Score=70.26 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=59.2
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhc-cccccccccccccchhHHHhh---hCCchhhHhhhhhhhhH-HhhHHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-SGLHILSSEYAKVPWFDSVFA---DIGDEQSLSQSLSTFSG-HLKQIG 527 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-~G~~vpa~~~~~i~~~~~i~~---~ig~~q~i~~~lstfS~-~~~rl~ 527 (844)
.+|++++|.|++|+|||||+..++....... ..+++.. +...-.+..+++. .+.... +.. ..++. +..++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl-Ems~~ql~~Rlls~~~~v~~~~-l~~--g~Ls~~e~~~l~ 119 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL-EMSAEQLALRALSDLTSINMHD-LES--GRLDDDQWENLA 119 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES-SSCHHHHHHHHHHHHHCCCHHH-HHH--TCCCHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC-CCCHHHHHHHHHHHhhCCCHHH-Hhc--CCCCHHHHHHHH
Confidence 5789999999999999999988865433311 1112222 2221122222221 222221 111 12333 445555
Q ss_pred HHHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHH-hc-CCeEEEEEccc
Q 003142 528 NIISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFA-ES-GSLLTIATTHH 578 (844)
Q Consensus 528 ~il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~-~~-g~t~vIitTHd 578 (844)
.+...+.+++++|.|+|+. ++.+.. ..++.+. .. |.. +|++-|.
T Consensus 120 ~a~~~l~~~~l~I~d~~~~--si~~i~----~~ir~l~~~~gg~~-lIVIDyL 165 (338)
T 4a1f_A 120 KCFDHLSQKKLFFYDKSYV--RIEQIR----LQLRKLKSQHKELG-IAFIDYL 165 (338)
T ss_dssp HHHHHHHHSCEEEECCTTC--CHHHHH----HHHHHHHHHCTTEE-EEEEEEE
T ss_pred HHHHHHhcCCeEEeCCCCC--cHHHHH----HHHHHHHHhcCCCC-EEEEech
Confidence 5555556678999998854 342222 2333343 34 454 6666554
No 187
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.54 E-value=0.00084 Score=70.19 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=22.0
Q ss_pred cCceEEEEEccCCCCchhhHhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
..+.+++|+|||||||||++|+|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999999996
No 188
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.54 E-value=0.0001 Score=76.56 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=24.1
Q ss_pred EEEEecCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 448 disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
+++|.. .+++|+|||||||||||++|+++.
T Consensus 22 ~~~~~~--~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 22 TFDLDE--LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp EECHHH--HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEcC--cEEEEECCCCCCHHHHHHHHhccc
Confidence 455544 678999999999999999996543
No 189
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.54 E-value=0.0011 Score=66.75 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.7
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..+.+++|+|||||||||+++.|+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998653
No 190
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.52 E-value=0.0033 Score=67.83 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=50.7
Q ss_pred ceEEEEEccCCCCchhhHhhhhhHHHhhcccccccccccccc-chhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHHHhC
Q 003142 455 TRVLVITGPNTGGKTICLKTVGLAVMMAKSGLHILSSEYAKV-PWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNIISQS 533 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~~vpa~~~~~i-~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il~~a 533 (844)
+..+.|.||.|+|||+|++.|+..... ..|..+-. ... .++..+...+... . +.. .+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~---~~~~~l~~~l~~~~~~~-~----~~~----------~~~~~ 212 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTL---LHFPSFAIDVKNAISNG-S----VKE----------EIDAV 212 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEE---EEHHHHHHHHHCCCC---------CC----------TTHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEE---EEHHHHHHHHHHHhccc-h----HHH----------HHHHh
Confidence 356899999999999999998653331 22321110 000 1122222212111 0 000 01112
Q ss_pred CCCcEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEccc
Q 003142 534 TSQSLVLLDEIGAG-TNPLEGTALGMSLLEAFAESGSLLTIATTHH 578 (844)
Q Consensus 534 ~~p~LLLLDEP~sG-lDp~~~~al~~~Ile~L~~~g~t~vIitTHd 578 (844)
.+++||+|||++.. +++.....+...+++.....+.. +|+||+.
T Consensus 213 ~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~-~IitSN~ 257 (308)
T 2qgz_A 213 KNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELP-TFFTSNY 257 (308)
T ss_dssp HTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCC-EEEEESS
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCc-EEEECCC
Confidence 35689999999542 23322223444456554444555 7888875
No 191
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.49 E-value=0.00096 Score=72.30 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=20.6
Q ss_pred eEEEEEccCCCCchhhHhhhhhH
Q 003142 456 RVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
++++|+||||||||||||.|.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 57899999999999999998654
No 192
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.44 E-value=0.0016 Score=65.94 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.8
Q ss_pred ceEEEEEccCCCCchhhHhhhhhH
Q 003142 455 TRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..+.+|+||||+||||+|.+|..+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999998543
No 193
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.40 E-value=0.0024 Score=66.99 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.3
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..+.|.||.|+||||+.+.++.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4489999999999999999854
No 194
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.39 E-value=0.0014 Score=73.81 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=24.3
Q ss_pred EEEecCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 449 isl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
+++ .++++++|+||||+||||+|++|+++.
T Consensus 21 ~~~-~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 21 VGF-GESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EEC-TTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEe-cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 444 346789999999999999999996543
No 195
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.36 E-value=0.0013 Score=66.88 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCCchhhHhhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.|++++|+||||+|||||++.|..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 678999999999999999999853
No 196
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.36 E-value=0.011 Score=64.30 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.5
Q ss_pred cCceEEEEEccCCCCchhhHhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..+.++.|.||.|+|||||...++.
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567789999999999999998864
No 197
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.35 E-value=0.0042 Score=64.41 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEEccCCCCchhhHhhhhhH
Q 003142 458 LVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~l 478 (844)
++|+||+|+||||+++.|+..
T Consensus 48 vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 789999999999999999653
No 198
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.34 E-value=0.0033 Score=66.65 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.8
Q ss_pred eEEEEEccCCCCchhhHhhhhhHH
Q 003142 456 RVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
..++|+||+|+||||+.+.|+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 468999999999999999997544
No 199
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.34 E-value=0.001 Score=76.93 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=26.7
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
+..++++. ..|.+++|+|||||||||||++|.++
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44455555 56777999999999999999998543
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.32 E-value=0.0044 Score=66.26 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.7
Q ss_pred CceEEEEEccCCCCchhhHhhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++.++|.||+|+||||+.+.|+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH
Confidence 345689999999999999999864
No 201
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.32 E-value=0.00057 Score=72.59 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=25.7
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.+..++++. +.| ++|+||||+|||||+|+|++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 455566666 344 899999999999999999753
No 202
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.31 E-value=0.0011 Score=71.26 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+++++|+||||+||||||++|+
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHS
T ss_pred cCCeEEEECCCCCcHHHHHHHhc
Confidence 46789999999999999999994
No 203
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.27 E-value=0.0035 Score=76.39 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.8
Q ss_pred CceEEEEEccCCCCchhhHhhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++.++|+||||+|||||+|+|+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 445689999999999999999964
No 204
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.26 E-value=0.0054 Score=63.40 Aligned_cols=124 Identities=18% Similarity=0.147 Sum_probs=63.1
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhh-cccccc-ccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KSGLHI-LSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 530 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-q~G~~v-pa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il 530 (844)
..|.+++|+||-|+||||++-.+..-.... ....++ |. .... + ..++..++|..-... .+.. ...+...+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~-~d~r-~-~~~i~srlG~~~~~~-~~~~----~~~i~~~i 81 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK-IDTR-S-IRNIQSRTGTSLPSV-EVES----APEILNYI 81 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-CCGG-G-CSSCCCCCCCSSCCE-EESS----THHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEec-cCch-H-HHHHHHhcCCCcccc-ccCC----HHHHHHHH
Confidence 567899999999999999876553221111 111111 22 1111 1 123444444321100 0111 11122222
Q ss_pred Hh---CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccc-----------hhHHhhhccccce
Q 003142 531 SQ---STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHH-----------GELKTLKYSNDFF 591 (844)
Q Consensus 531 ~~---a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd-----------~el~~~a~~~~~v 591 (844)
.. -.++++|++||.-. +++ + +. ..+..+.+.|.+ ||++-|+ .++..+|+.+..+
T Consensus 82 ~~~~~~~~~dvViIDEaQ~-l~~-~---~v-e~l~~L~~~gi~-Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQF-FDD-R---IC-EVANILAENGFV-VIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp HSTTSCTTCCEEEECSGGG-SCT-H---HH-HHHHHHHHTTCE-EEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred HHHhhCCCCCEEEEecCcc-CcH-H---HH-HHHHHHHhCCCe-EEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 21 23589999999843 444 1 22 234556667887 9999993 3444567666554
No 205
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.25 E-value=0.0016 Score=70.99 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.4
Q ss_pred eEEEEEccCCCCchhhHhhhhhH
Q 003142 456 RVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
-+++|+||||||||||+++|..+
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998654
No 206
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.25 E-value=0.0014 Score=70.46 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.|++++|+||||+|||||+++|.
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999999985
No 207
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.24 E-value=0.00039 Score=73.10 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=31.0
Q ss_pred CCccceeEEEEe-cC---ceEEEEEccCCCCchhhHhhhhh
Q 003142 441 LAHPVPIDIFIA-RK---TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 441 ~~~~V~~disl~-~~---g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
++..++.++++. .. |++++|+||+||||||+.+.|+.
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 345688889888 66 88999999999999999999964
No 208
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.23 E-value=0.00081 Score=79.28 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=32.2
Q ss_pred ccCCccceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 439 LELAHPVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 439 ~~~~~~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
+.|...+...+++. ..|+.++|+||||+|||||+++|+...
T Consensus 43 i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred EECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 33555666667766 667889999999999999999997543
No 209
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.22 E-value=0.0033 Score=64.55 Aligned_cols=46 Identities=22% Similarity=0.174 Sum_probs=28.4
Q ss_pred hCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEEccc
Q 003142 532 QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAE-SGSLLTIATTHH 578 (844)
Q Consensus 532 ~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~-~g~t~vIitTHd 578 (844)
....++++|+..+.+..+..+...+ ..+.+.+.. ....++|+.||-
T Consensus 109 ~~~~~~~~l~v~d~~~~~~~~~~~l-~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGRYTEEEHKAT-EKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TTTCCSEEEEEEETTCCSSHHHHHH-HHHHHHHHHHHGGGEEEEEECG
T ss_pred cCCCCcEEEEEeeCCCCCHHHHHHH-HHHHHHhhhhccceEEEEEeCC
Confidence 3567899999998877777444443 445444332 122237888884
No 210
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.21 E-value=0.0016 Score=65.19 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=19.3
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+++|+|||||||||+.+.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999965
No 211
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.18 E-value=0.0016 Score=72.11 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.7
Q ss_pred cCceEEEEEccCCCCchhhHhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
..|++++|+||||+|||||+++|.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHHHHh
Confidence 357899999999999999999995
No 212
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.16 E-value=0.00075 Score=75.17 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=28.9
Q ss_pred cceeEEEEe-cCceEEEEEccCCCCchhhHhhhhh
Q 003142 444 PVPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 444 ~V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+..+++++ +.|++++|+||||+|||||+++|++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 356667777 7788999999999999999999975
No 213
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.13 E-value=0.0063 Score=65.00 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=19.3
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..++|.||.|+|||++.+.|+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999864
No 214
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.11 E-value=0.0068 Score=62.21 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=19.9
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.|+.++|+||+||||||++..+.
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHH
Confidence 45779999999999999988764
No 215
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.09 E-value=0.002 Score=64.21 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=19.2
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+++|+|||||||||+.+.|+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999865
No 216
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.02 E-value=0.0024 Score=64.67 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.9
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+++|+||+||||||+.+.|+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 217
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.98 E-value=0.0054 Score=73.17 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=28.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhH
Q 003142 533 STSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL 581 (844)
Q Consensus 533 a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el 581 (844)
..+.-++++| ++.|+++... .++..+...+.+ +|++.|..++
T Consensus 97 ~ad~~ilVvD-~~~g~~~qt~-----~~~~~~~~~~ip-~ilv~NKiD~ 138 (665)
T 2dy1_A 97 AADAALVAVS-AEAGVQVGTE-----RAWTVAERLGLP-RMVVVTKLDK 138 (665)
T ss_dssp HCSEEEEEEE-TTTCSCHHHH-----HHHHHHHHTTCC-EEEEEECGGG
T ss_pred hcCcEEEEEc-CCcccchhHH-----HHHHHHHHccCC-EEEEecCCch
Confidence 3567899999 9999998433 233444556777 7777886654
No 218
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.98 E-value=0.0043 Score=68.52 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=25.4
Q ss_pred EEEEecCceEEEEEccCCCCchhhHhhhhhHHH
Q 003142 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAVM 480 (844)
Q Consensus 448 disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~~ 480 (844)
+..++-+..+.+|+||||+||||+|..|+...+
T Consensus 18 ~~~i~f~~gl~vi~G~NGaGKT~ileAI~~~l~ 50 (371)
T 3auy_A 18 NSRIKFEKGIVAIIGENGSGKSSIFEAVFFALF 50 (371)
T ss_dssp EEEEECCSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEecCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 445553446899999999999999999965333
No 219
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.98 E-value=0.0027 Score=63.57 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.9
Q ss_pred cCceEEEEEccCCCCchhhHhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..+.+++|+||+||||||+.+.|+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999864
No 220
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.96 E-value=0.00075 Score=73.47 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.8
Q ss_pred eEEEEEccCCCCchhhHhhhhhH
Q 003142 456 RVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..++|+||||+|||||+++|++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999999999999764
No 221
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.95 E-value=0.03 Score=61.96 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.5
Q ss_pred cCceEEEEEccCCCCchhhHhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+.|+++.|.||.|+|||||...++.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHH
Confidence 4678999999999999999887753
No 222
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.87 E-value=0.0011 Score=71.82 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCCchhhHhhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.|++++|+||||+|||||+++|.+
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc
Confidence 578999999999999999999943
No 223
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.86 E-value=0.0013 Score=68.25 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=24.2
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
+..++++. +.| ++|+||||+|||||+++|+..
T Consensus 40 ~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 40 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 44445555 333 899999999999999999653
No 224
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.85 E-value=0.0033 Score=61.45 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.2
Q ss_pred CceEEEEEccCCCCchhhHhhhhhH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.|.+++|+|++||||||+.+.++..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999653
No 225
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.85 E-value=0.0018 Score=64.16 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.4
Q ss_pred eEEEEEccCCCCchhhHhhhhhH
Q 003142 456 RVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
++++|+||||||||||++.|..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999654
No 226
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.84 E-value=0.022 Score=64.48 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=23.7
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVM 480 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~ 480 (844)
.+|.+++|.|++|+|||||...++....
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999988865443
No 227
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.84 E-value=0.0031 Score=62.35 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.3
Q ss_pred EEEEEccCCCCchhhHhhhhhH
Q 003142 457 VLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.++|+||||+|||||++.+.+.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999998643
No 228
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.77 E-value=0.013 Score=63.26 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=47.8
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhc-cccccccccccccchhHHHhh---hCCchhhHhhhhhhhhH-HhhHHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-SGLHILSSEYAKVPWFDSVFA---DIGDEQSLSQSLSTFSG-HLKQIG 527 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-~G~~vpa~~~~~i~~~~~i~~---~ig~~q~i~~~lstfS~-~~~rl~ 527 (844)
.+|++++|.|+.|+|||||+..++....... ..+++.. +...-.+..++.. .+.... +..+...++. +..++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl-E~s~~~l~~R~~~~~~~i~~~~-l~~~~~~l~~~~~~~l~ 143 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL-EMGKKENIKRLIVTAGSINAQK-IKAARRDFASEDWGKLS 143 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES-SSCHHHHHHHHHHHHTTCCHHH-HHSCHHHHCSSCHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC-CCCHHHHHHHHHHHHcCCCHHH-HhcCCCCCCHHHHHHHH
Confidence 5789999999999999999988864333211 1122222 2221112222222 222211 1111111322 234455
Q ss_pred HHHHhCCCCcEEEEecCCC
Q 003142 528 NIISQSTSQSLVLLDEIGA 546 (844)
Q Consensus 528 ~il~~a~~p~LLLLDEP~s 546 (844)
.+...+.+..+++.|+|+.
T Consensus 144 ~a~~~l~~~~i~i~d~~~~ 162 (315)
T 3bh0_A 144 MAIGEISNSNINIFDKAGQ 162 (315)
T ss_dssp HHHHHHHTSCEEEECCSCC
T ss_pred HHHHHHhCCCEEEECCCCC
Confidence 5555555678999999853
No 229
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.75 E-value=0.012 Score=64.56 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
...++|+||.|+||||+.+.|+.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999853
No 230
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.74 E-value=0.0033 Score=62.27 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.8
Q ss_pred EEEEccCCCCchhhHhhhhhH
Q 003142 458 LVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~l 478 (844)
++|+||||+|||||++.+.+.
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999998643
No 231
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.74 E-value=0.0052 Score=63.69 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=32.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHHhh
Q 003142 534 TSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELKTL 584 (844)
Q Consensus 534 ~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~~~ 584 (844)
..|+++|+|||+.--.+.....+.+..+..+...|.. ++.|+|-.++..+
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgid-VitT~Nlqh~esl 132 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGID-VYTTVNVQHLESL 132 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCE-EEEEEEGGGBGGG
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCC-EEEEccccccccH
Confidence 3799999999986422333333344444556777876 8889986555433
No 232
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.71 E-value=0.014 Score=66.31 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCCchhhHhhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+..+++++||+|+||||++..|+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 457899999999999999988863
No 233
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.70 E-value=0.0016 Score=68.69 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=24.4
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
+..++++. +.| ++|+||||+|||||+++|+..
T Consensus 64 ~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 64 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 44455555 333 799999999999999999653
No 234
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.70 E-value=0.053 Score=57.28 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCCchhhHhhhhhH
Q 003142 455 TRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
+..++|+||.|+||||+.+.++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999998644
No 235
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.67 E-value=0.016 Score=62.22 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.5
Q ss_pred EEEEccCCCCchhhHhhhhhHH
Q 003142 458 LVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
++|+||+|+||||+++.++...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999996543
No 236
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.67 E-value=0.019 Score=66.24 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEccCCCCchhhHhhhhhH
Q 003142 458 LVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~l 478 (844)
++|+||||+|||||+|+|+..
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999999753
No 237
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.66 E-value=0.043 Score=66.16 Aligned_cols=21 Identities=24% Similarity=0.223 Sum_probs=19.0
Q ss_pred EEEEccCCCCchhhHhhhhhH
Q 003142 458 LVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~l 478 (844)
++|+||.|+||||+.+.++..
T Consensus 204 vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998654
No 238
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.59 E-value=0.019 Score=57.10 Aligned_cols=21 Identities=43% Similarity=0.551 Sum_probs=18.0
Q ss_pred ceEEEEEccCCCCchhhHhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTV 475 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~I 475 (844)
|.+++|+||.|+||||++--+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 678999999999999997433
No 239
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.58 E-value=0.011 Score=66.81 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=25.4
Q ss_pred EEEEecCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 448 DIFIARKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 448 disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
++++. ++++++|+||||+||||++..++...
T Consensus 92 ~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 92 LPVLK-DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp CCCCC-SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cccCC-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555 77899999999999999999987543
No 240
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.53 E-value=0.0044 Score=62.18 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.8
Q ss_pred cCceEEEEEccCCCCchhhHhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..|.+++|+||+||||||+.+.|..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH
Confidence 3568899999999999999999853
No 241
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.53 E-value=0.057 Score=58.75 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=59.0
Q ss_pred CceEEEEEccCCCCchhhHhhhhhHHHh---hccccccccccccccchhHHHhhhCCchh-hHhhhhhhhhHHh--hHHH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLAVMM---AKSGLHILSSEYAKVPWFDSVFADIGDEQ-SLSQSLSTFSGHL--KQIG 527 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l~~~---~q~G~~vpa~~~~~i~~~~~i~~~ig~~q-~i~~~lstfS~~~--~rl~ 527 (844)
.| ++.|.||.|+|||||+-.++.-... .....|+.. +.+.-+ .....+|... ++.. ....+.+. ..+.
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~-E~s~~~---~ra~~lGvd~d~llv-~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS-EFGITP---AYLRSMGVDPERVIH-TPVQSLEQLRIDMV 101 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES-SCCCCH---HHHHHTTCCGGGEEE-EECSBHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec-cchhhH---HHHHHhCCCHHHeEE-EcCCCHHHHHHHHH
Confidence 45 6899999999999996655322221 112234444 222111 1244555431 1110 11112222 2222
Q ss_pred HHHH--hCCCCcEEEEecCCCCCC-------HH--------HHHHHH---HHHHHHHHhcCCeEEEEEccchh
Q 003142 528 NIIS--QSTSQSLVLLDEIGAGTN-------PL--------EGTALG---MSLLEAFAESGSLLTIATTHHGE 580 (844)
Q Consensus 528 ~il~--~a~~p~LLLLDEP~sGlD-------p~--------~~~al~---~~Ile~L~~~g~t~vIitTHd~e 580 (844)
..+. .-..|++|++|=.++=.- +. ....+. ..+...+.+.+++ +|+|-|-..
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~-vi~tNQV~k 173 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIP-CIAINHTYE 173 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCE-EEEEEEC--
T ss_pred HHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEECCeee
Confidence 2231 235799999998876542 10 111121 2233445677887 899988755
No 242
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.49 E-value=0.0028 Score=73.28 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=25.5
Q ss_pred eeEEEEe-cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 446 PIDIFIA-RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 446 ~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..+++|. .+| +.+|+|+||+||||+|.+|.++
T Consensus 51 ~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp BSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 3456666 344 8999999999999999999654
No 243
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.46 E-value=0.0041 Score=72.58 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.5
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
..|.+++|+|||||||||++|+|+...
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhh
Confidence 467899999999999999999996543
No 244
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.34 E-value=0.046 Score=56.15 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.3
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..+.|+||.|+||||+.+.++.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4478999999999999999864
No 245
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.29 E-value=0.0055 Score=61.10 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..+++|+||+||||||+.+.|+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999854
No 246
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.27 E-value=0.021 Score=62.72 Aligned_cols=23 Identities=22% Similarity=0.044 Sum_probs=19.3
Q ss_pred ceEEEE--EccCCCCchhhHhhhhh
Q 003142 455 TRVLVI--TGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~I--tGPNGsGKTTLLK~Ig~ 477 (844)
+..++| +||.|+|||||++.+..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~ 74 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVK 74 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHH
Confidence 456677 99999999999999853
No 247
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.14 E-value=0.037 Score=59.46 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.6
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++|+||.|+||||+.+.++.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 378999999999999999853
No 248
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.11 E-value=0.031 Score=60.13 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.4
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.-+.|.||.|+|||++.+.++.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999999999864
No 249
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.09 E-value=0.065 Score=69.73 Aligned_cols=120 Identities=22% Similarity=0.228 Sum_probs=60.2
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhc-cccccccccccccchhHHHhhhCCch-hhHh-hhhhhhhHHhhHHHHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-SGLHILSSEYAKVPWFDSVFADIGDE-QSLS-QSLSTFSGHLKQIGNI 529 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-~G~~vpa~~~~~i~~~~~i~~~ig~~-q~i~-~~lstfS~~~~rl~~i 529 (844)
.+|++++|.||+|+|||||+..++....... ...|+.. +...-... ...+|.. +++. ....+. .++.....-
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~-Ees~~ql~---A~~lGvd~~~L~i~~~~~l-eei~~~l~~ 804 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA-EHALDPIY---ARKLGVDIDNLLCSQPDTG-EQALEICDA 804 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT-TSCCCHHH---HHHTTCCGGGCEEECCSSH-HHHHHHHHH
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec-cchHHHHH---HHHcCCChhheEEecCCcH-HHHHHHHHH
Confidence 4678999999999999999998865433211 1123333 22211111 2223321 1110 000011 111111111
Q ss_pred HHhCCCCcEEEEecCCCCCC-H------------HHHHHH---HHHHHHHHHhcCCeEEEEEccc
Q 003142 530 ISQSTSQSLVLLDEIGAGTN-P------------LEGTAL---GMSLLEAFAESGSLLTIATTHH 578 (844)
Q Consensus 530 l~~a~~p~LLLLDEP~sGlD-p------------~~~~al---~~~Ile~L~~~g~t~vIitTHd 578 (844)
+..-..|++|++|+...-.. + .....+ ...+...+.+.+++ ||+++|.
T Consensus 805 lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~-VIlinql 868 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL-LIFINQI 868 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCE-EEEEECE
T ss_pred HHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCE-EEEEecC
Confidence 11235799999999987552 1 011122 22333345677887 8999884
No 250
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.07 E-value=0.0086 Score=58.50 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.4
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.|.+++|+||+||||||+.+.++
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999985
No 251
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.06 E-value=0.0088 Score=61.66 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.4
Q ss_pred cCceEEEEEccCCCCchhhHhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..|.+++|.||+||||||+++.|..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999854
No 252
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.03 E-value=0.0092 Score=58.84 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=21.9
Q ss_pred EEe-cCceEEEEEccCCCCchhhHhhhhh
Q 003142 450 FIA-RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 450 sl~-~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
++. ..+..++|+|+.||||||+.+.++.
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 444 4567899999999999999999853
No 253
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.088 Score=59.61 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.4
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+-+.|.||.|+|||+|.|.|+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999999964
No 254
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.00 E-value=0.01 Score=58.38 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.9
Q ss_pred cCceEEEEEccCCCCchhhHhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..+.+++|+|++||||||+.+.++.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3568899999999999999999864
No 255
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.96 E-value=0.091 Score=51.47 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=18.3
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+||.|+||||+++.++.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999854
No 256
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.82 E-value=0.029 Score=60.69 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.3
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..++|+||.|+||||+++.++.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999854
No 257
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.81 E-value=0.037 Score=59.40 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=24.9
Q ss_pred EEEecCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 449 IFIARKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 449 isl~~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
+++...+.+++++||||+||||++..++...
T Consensus 92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CSCSSSSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4445347899999999999999999986543
No 258
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.78 E-value=0.028 Score=64.58 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.1
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.-+.|+||.|+|||++.+.|+.
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 3478999999999999999853
No 259
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.77 E-value=0.044 Score=60.58 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
...++|.||.|+|||++.+.|+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999853
No 260
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.76 E-value=0.028 Score=64.77 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.8
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+.++|+||.|+||||+.+.++.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999864
No 261
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.76 E-value=0.011 Score=56.69 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=18.5
Q ss_pred EEEEEccCCCCchhhHhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig 476 (844)
+++|+||.||||||+.+.|+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 262
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.69 E-value=0.039 Score=59.68 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.5
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+.+.|.||.|+|||++.+.++.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 4588999999999999999864
No 263
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.67 E-value=0.013 Score=64.27 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.7
Q ss_pred CceEEEEEccCCCCchhhHhhhhhH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
++.+++|+||+|+||||||+.+.+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999654
No 264
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.66 E-value=0.012 Score=65.73 Aligned_cols=56 Identities=4% Similarity=-0.109 Sum_probs=36.5
Q ss_pred CC--cEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCeEEEEEccchhH-Hhhhcccc-ceeee
Q 003142 535 SQ--SLVLLDEIGAGTNPLEGTALGMSLLEAF-AESGSLLTIATTHHGEL-KTLKYSND-FFENA 594 (844)
Q Consensus 535 ~p--~LLLLDEP~sGlDp~~~~al~~~Ile~L-~~~g~t~vIitTHd~el-~~~a~~~~-~v~ng 594 (844)
+| ++.+||||+.+.|+....... ..++.+ ...|.+ ++ +|+... ..++++.. .+.+|
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~-~~l~~~~~~~g~t-i~--sh~~~~~~~l~~~i~~~L~~G 199 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHL-EGLRKITSRGANT-LE--MKAKKEEQAIIEKVYQYLTET 199 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCCSSCS-SS--HHHHHHHHHHHHHHHHHHHTT
T ss_pred CcchhhhhchhhhHHHHHHHHHHHH-HHHHHHHHhcCCc-cc--cccHHHHHHHHHHHHHHhccC
Confidence 67 899999999999985555443 444544 444555 43 898644 45777665 55555
No 265
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.66 E-value=0.13 Score=52.17 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=31.8
Q ss_pred CCCCcEEEEecCCC----CCCHHHHHHHHHHHHHHHHhcCCeEEEEEccch
Q 003142 533 STSQSLVLLDEIGA----GTNPLEGTALGMSLLEAFAESGSLLTIATTHHG 579 (844)
Q Consensus 533 a~~p~LLLLDEP~s----GlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~ 579 (844)
..+++++++|-.+. .-|+.....+...+.....+.+++ +++++|..
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~-vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVT-TILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCE-EEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCC-eEEEEEEe
Confidence 35788999996531 124445556666777777788997 89998864
No 266
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.64 E-value=0.037 Score=57.72 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.5
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..+.|+||.|+||||+.+.++.
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4578999999999999999864
No 267
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.64 E-value=0.088 Score=49.66 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
+.|.||.|+|||++.+.|+
T Consensus 30 vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp EEEEEETTCCHHHHHGGGC
T ss_pred EEEECCCCccHHHHHHHHH
Confidence 7899999999999999984
No 268
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.59 E-value=0.013 Score=60.02 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.5
Q ss_pred cCceEEEEEccCCCCchhhHhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..+.+++|+|+|||||||+.+.|+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999853
No 269
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.13 Score=57.98 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.5
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+-+++.||.|+|||++.|.|+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999999999964
No 270
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.50 E-value=0.016 Score=58.41 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.8
Q ss_pred CceEEEEEccCCCCchhhHhhhhhH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.|.+++|+|++||||||+.+.|...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998643
No 271
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.45 E-value=0.045 Score=59.96 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.-++|.||.|+|||++.+.++.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999999864
No 272
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.40 E-value=0.23 Score=56.29 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=22.8
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
.+|.+++|.|+.|+|||||.-.++.-.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 568899999999999999988875433
No 273
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.39 E-value=0.036 Score=52.49 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=17.8
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
+.|+||.|+|||++.+.|.
T Consensus 27 vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999985
No 274
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.31 E-value=0.073 Score=59.64 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=18.5
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
+.|.||.|+|||.|.|.|+.
T Consensus 185 vLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHH
Confidence 78999999999999999964
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.27 E-value=0.016 Score=55.06 Aligned_cols=20 Identities=35% Similarity=0.502 Sum_probs=18.1
Q ss_pred eEEEEEccCCCCchhhHhhh
Q 003142 456 RVLVITGPNTGGKTICLKTV 475 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~I 475 (844)
.+++|+||.||||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999987
No 276
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.22 E-value=0.02 Score=57.73 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.3
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+.+++|+|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999864
No 277
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.21 E-value=0.018 Score=55.78 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.7
Q ss_pred ceEEEEEccCCCCchhhHhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
+.+++|+||.||||||+.+.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999985
No 278
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.19 E-value=0.017 Score=57.21 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.6
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+++|+||+|+|||||++.|..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999854
No 279
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.15 E-value=0.073 Score=55.24 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=60.4
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhh-ccc-cccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMA-KSG-LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 530 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~-q~G-~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il 530 (844)
..|.+.+++||=|+||||.|--...-...+ +.. .+.|. ...+.+ ..+..++|..-... ..... .. ++
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~-~D~Ryg--~~i~sr~G~~~~a~-~i~~~-~d------i~ 85 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYS--SSFCTHDRNTMEAL-PACLL-RD------VA 85 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET-TCCCC-------------CEEE-EESSG-GG------GH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec-CCccch--HHHHhhcCCeeEEE-ecCCH-HH------HH
Confidence 457899999999999998654432222111 111 12233 222222 34444444321100 01111 01 12
Q ss_pred HhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccch-----------hHHhhhcccccee
Q 003142 531 SQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG-----------ELKTLKYSNDFFE 592 (844)
Q Consensus 531 ~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~-----------el~~~a~~~~~v~ 592 (844)
..+.+.++|++||----.+ ...+++.+.+.|.. ||++-++. ++..+|+.+..+.
T Consensus 86 ~~~~~~dvViIDEaQF~~~-------v~el~~~l~~~gi~-VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 86 QEALGVAVIGIDEGQFFPD-------IVEFCEAMANAGKT-VIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HHHTTCSEEEESSGGGCTT-------HHHHHHHHHHTTCE-EEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred HHhccCCEEEEEchhhhhh-------HHHHHHHHHhCCCE-EEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 2226789999999855543 24566677778887 99999993 4445666665543
No 280
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.14 E-value=0.032 Score=63.15 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.5
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+.++|.||.|+|||++.+.++.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999864
No 281
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.13 E-value=0.015 Score=58.28 Aligned_cols=20 Identities=45% Similarity=0.763 Sum_probs=18.0
Q ss_pred eEEEEEccCCCCchhhHhhh
Q 003142 456 RVLVITGPNTGGKTICLKTV 475 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~I 475 (844)
+.++|+||+|+|||||++.|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 44799999999999999987
No 282
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.12 E-value=0.019 Score=60.02 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+++|+|||||||||+-+.|+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999998853
No 283
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.07 E-value=0.059 Score=54.14 Aligned_cols=120 Identities=18% Similarity=0.139 Sum_probs=60.1
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhcccc----ccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAKSGL----HILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGN 528 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q~G~----~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~ 528 (844)
..|.+.+++||-|+||||.+--+..-.. ..|. +-|. ...+.+ ...+..++|..-.. ...... ..
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~--~~g~kV~v~k~~-~d~r~~-~~~i~s~~g~~~~a-~~~~~~-------~~ 73 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK--IAKQKIQVFKPE-IDNRYS-KEDVVSHMGEKEQA-VAIKNS-------RE 73 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEEC---------CEEECTTSCEEEC-EEESSS-------TH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEec-cCccch-HHHHHhhcCCceee-EeeCCH-------HH
Confidence 4578999999999999987655432221 1121 1122 111111 01122333321000 000111 12
Q ss_pred HHHhCC-CCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccch-----------hHHhhhccccce
Q 003142 529 IISQST-SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG-----------ELKTLKYSNDFF 591 (844)
Q Consensus 529 il~~a~-~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~-----------el~~~a~~~~~v 591 (844)
++..+. +.++|++||--- +|+.. . ..++.+.+.|.. ||++.++. ++..+|+.+..+
T Consensus 74 i~~~~~~~~dvViIDEaqf-l~~~~----v-~~l~~l~~~~~~-Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el 141 (191)
T 1xx6_A 74 ILKYFEEDTEVIAIDEVQF-FDDEI----V-EIVNKIAESGRR-VICAGLDMDFRGKPFGPIPELMAIAEFVDKI 141 (191)
T ss_dssp HHHHCCTTCSEEEECSGGG-SCTHH----H-HHHHHHHHTTCE-EEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred HHHHHhccCCEEEEECCCC-CCHHH----H-HHHHHHHhCCCE-EEEEecccccccCcCccHHHHHHHcccEEee
Confidence 333333 479999999533 66522 2 245566667887 88888843 445677766444
No 284
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.05 E-value=0.013 Score=71.28 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCCchhhHhhhhhH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.++.++|+||||+|||||.|+|+..
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred CCceeEEECCCCCCHHHHHHHHHHH
Confidence 4456899999999999999999754
No 285
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.01 E-value=0.021 Score=55.62 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+.+++|+||.||||||+.+.|+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999853
No 286
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.97 E-value=0.025 Score=61.72 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.9
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..+.+++|+|+||+|||||++.++..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 56788999999999999999998654
No 287
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.92 E-value=0.024 Score=55.37 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.3
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+.+++|+|+.||||||+.+.++
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999985
No 288
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.92 E-value=0.26 Score=49.76 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=35.5
Q ss_pred HHHHHhC--CCCcEEEEecCCCC--CCHHHHHHHHHHHHHHHHhc--CCeEEEEEccc--hhHHhhhccccce
Q 003142 527 GNIISQS--TSQSLVLLDEIGAG--TNPLEGTALGMSLLEAFAES--GSLLTIATTHH--GELKTLKYSNDFF 591 (844)
Q Consensus 527 ~~il~~a--~~p~LLLLDEP~sG--lDp~~~~al~~~Ile~L~~~--g~t~vIitTHd--~el~~~a~~~~~v 591 (844)
..+...+ ...+||||||.+.. ++..... .+++.+.++ ... ||+|+++ .++..+||-+-.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~----ev~~~l~~Rp~~~~-vIlTGr~ap~~l~e~AD~VTem 177 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYLPLE----EVISALNARPGHQT-VIITGRGCHRDILDLADTVSEL 177 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSSCHH----HHHHHHHTSCTTCE-EEEECSSCCHHHHHHCSEEEEC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCCCHH----HHHHHHHhCcCCCE-EEEECCCCcHHHHHhCcceeee
Confidence 3344444 56899999999653 1111222 234444433 454 8999987 4677788766544
No 289
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.13 Score=58.04 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.4
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+-+.|.||.|+|||++.|+|+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHH
Confidence 3479999999999999999964
No 290
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.91 E-value=0.021 Score=54.63 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.8
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++|+|+||+|||||++.+.+
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999999853
No 291
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.86 E-value=0.02 Score=59.47 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=21.4
Q ss_pred cCceEEEEEccCCCCchhhHhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..+.+++|+||+||||||+.+.|+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457889999999999999999853
No 292
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.85 E-value=0.02 Score=55.64 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=18.7
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++|+||+||||||+.+.|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999853
No 293
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.84 E-value=0.1 Score=55.07 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=18.4
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|.||.|+||||+.+.++.
T Consensus 49 ~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 79999999999999999864
No 294
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.82 E-value=0.024 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+..++|+|++|+|||||++.+.+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999999853
No 295
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.82 E-value=0.15 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.3
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..++|+||.|+||||+.+.++.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4478999999999999999854
No 296
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.80 E-value=0.027 Score=55.57 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.7
Q ss_pred CceEEEEEccCCCCchhhHhhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
...+++|+|+.||||||+.+.|+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999854
No 297
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.75 E-value=0.025 Score=54.47 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.4
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+++|+||+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999853
No 298
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.73 E-value=0.081 Score=58.46 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=20.9
Q ss_pred ceEEEEEccCCCCchhhHhhhhhHH
Q 003142 455 TRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
+..++|+||+||||||+++.+....
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 4557999999999999999986443
No 299
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.72 E-value=0.021 Score=61.14 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+.+++|+|+||+|||||++.+.+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 34689999999999999999854
No 300
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.70 E-value=0.077 Score=60.20 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++|.||.|+||||+.+.|+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 479999999999999999864
No 301
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.70 E-value=0.023 Score=55.08 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.7
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++|+|++|+|||||++.+.+
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999999853
No 302
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.69 E-value=0.2 Score=65.17 Aligned_cols=120 Identities=23% Similarity=0.228 Sum_probs=61.3
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHh-hccccccccccccccchhHHHhhhCCch-hhHh-hhhhhhhHHhhHHHHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMM-AKSGLHILSSEYAKVPWFDSVFADIGDE-QSLS-QSLSTFSGHLKQIGNI 529 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~-~q~G~~vpa~~~~~i~~~~~i~~~ig~~-q~i~-~~lstfS~~~~rl~~i 529 (844)
+.|+++.|.||.|+|||||.-.++..... .....|+.. +...-.. ....+|.. +.+. ....+ ..+...+...
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~-E~s~~~~---~a~~lGvd~~~L~i~~~~~-~e~~l~~l~~ 455 (1706)
T 3cmw_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA-EHALDPI---YARKLGVDIDNLLCSQPDT-GEQALEICDA 455 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT-TSCCCHH---HHHHTTCCGGGCEEECCSS-HHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEc-cCchHHH---HHHHcCCCHHHeEEcCCCC-HHHHHHHHHH
Confidence 46789999999999999998877433222 112234433 2211111 12233321 1110 00011 1122222222
Q ss_pred HHhCCCCcEEEEecCCCCCCHHH------------H----HHHHHHHHHHHHhcCCeEEEEEccc
Q 003142 530 ISQSTSQSLVLLDEIGAGTNPLE------------G----TALGMSLLEAFAESGSLLTIATTHH 578 (844)
Q Consensus 530 l~~a~~p~LLLLDEP~sGlDp~~------------~----~al~~~Ile~L~~~g~t~vIitTHd 578 (844)
+....++++|++|...+=....+ . ......+...+++.+++ ||+++|.
T Consensus 456 lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~-VI~inQl 519 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL-LIFINQI 519 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCE-EEEEECE
T ss_pred HHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCE-EEEEeec
Confidence 22235799999999987654111 1 12223333444677997 9999886
No 303
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.69 E-value=0.03 Score=59.68 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.5
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+.+++|+||+||||||+.+.+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999984
No 304
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.64 E-value=0.091 Score=57.02 Aligned_cols=23 Identities=22% Similarity=0.066 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
...+.|+||.|+||||+++.++.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999864
No 305
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.54 E-value=0.23 Score=55.99 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.4
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+-+.|.||.|+|||.|.|.|+.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHH
Confidence 3489999999999999999964
No 306
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.54 E-value=0.027 Score=55.38 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.8
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 579999999999999999853
No 307
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.48 E-value=0.16 Score=58.07 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.4
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..|++++|.|+.|+|||||+-.++.-
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHH
Confidence 56899999999999999998887543
No 308
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.48 E-value=0.15 Score=55.07 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCCchhhHhhhhhH
Q 003142 455 TRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
+..+.|+||.|+||||+.+.++..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998643
No 309
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.48 E-value=0.03 Score=65.11 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCchhhHhhhhhHH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
.+.+++|+||||+|||||+|+|+...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57789999999999999999997544
No 310
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.42 E-value=0.012 Score=63.81 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=22.1
Q ss_pred cCceE--EEEEccCCCCchhhHhhhhhHH
Q 003142 453 RKTRV--LVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 453 ~~g~i--v~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
..|++ ++|+||||+||||+++.++...
T Consensus 42 ~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 42 DEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34555 8999999999999999997543
No 311
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.35 E-value=0.027 Score=56.96 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=57.8
Q ss_pred cCceEEEEEccCCCCch-hhHhhhhhHHHhhcccccc-ccccccccchhHHHhhhCCchhhH--hhhhhhhhHHhhHHHH
Q 003142 453 RKTRVLVITGPNTGGKT-ICLKTVGLAVMMAKSGLHI-LSSEYAKVPWFDSVFADIGDEQSL--SQSLSTFSGHLKQIGN 528 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKT-TLLK~Ig~l~~~~q~G~~v-pa~~~~~i~~~~~i~~~ig~~q~i--~~~lstfS~~~~rl~~ 528 (844)
..|++..|+||-|+||| -||+.++....-.+...++ |. -..+.+ ..+..++|..-.. ......|-.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~--~~i~S~~g~~~~A~~~~~~~d~~~------- 87 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYS--SSFCTHDRNTMEALPACLLRDVAQ------- 87 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGG--GSCCHHHHHHSEEEEESSGGGGHH-------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccch--hhhhhccCCcccceecCCHHHHHH-------
Confidence 45789999999999999 6777776444332222333 22 111211 2222222210000 001111111
Q ss_pred HHHhCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhHH
Q 003142 529 IISQSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGELK 582 (844)
Q Consensus 529 il~~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el~ 582 (844)
...+.++|++||-== + + + +. ..+..|.+.|.. ||++.++.++.
T Consensus 88 ---~~~~~DvIlIDEaQF-f-k-~---~v-e~~~~L~~~gk~-VI~~GL~~DF~ 130 (195)
T 1w4r_A 88 ---EALGVAVIGIDEGQF-F-P-D---IV-EFCEAMANAGKT-VIVAALDGTFQ 130 (195)
T ss_dssp ---HHHTCSEEEESSGGG-C-T-T---HH-HHHHHHHHTTCE-EEEEEESBCTT
T ss_pred ---hccCCCEEEEEchhh-h-H-H---HH-HHHHHHHHCCCe-EEEEecccccc
Confidence 123568999999622 2 2 2 22 344677788997 99999987663
No 312
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=93.30 E-value=0.37 Score=42.42 Aligned_cols=58 Identities=7% Similarity=-0.024 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003142 641 GAASAEINEVIIEMERFKTQFLEHVHEAR------HFLMLSRNLHKNLLRTRRKILEHCASQRF 698 (844)
Q Consensus 641 ~~~~~~le~~i~~Le~~~~~~e~~~~~~~------~~~~~~~~~~~~l~~~~~~l~e~~~~~~~ 698 (844)
.++...++..|++||.++..+++.+.++. ....++...+.+++.+++.++++|++|+.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999998764 45667777888889999999999987653
No 313
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.22 E-value=0.031 Score=54.44 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.6
Q ss_pred ceEEEEEccCCCCchhhHhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
+.+++|+||.||||||+.+.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4568999999999999999985
No 314
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.18 E-value=0.21 Score=66.01 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.7
Q ss_pred cCceEEEEEccCCCCchhhHhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..++++.|.||.|+|||||...++.
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999988854
No 315
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.10 E-value=0.11 Score=55.54 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.8
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++.+.||.|+||||+.+.++.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHH
Confidence 4578889999999999999853
No 316
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.10 E-value=0.12 Score=60.43 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.0
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.-++|.|..||||||+|++|..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHH
Confidence 3479999999999999999843
No 317
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.10 E-value=0.032 Score=54.38 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=18.3
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|++|+|||||++.+.+
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999854
No 318
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.09 E-value=0.018 Score=57.47 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.9
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+++|.||+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 319
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.95 E-value=0.041 Score=53.56 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.5
Q ss_pred ceEEEEEccCCCCchhhHhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
+.+++|+|+.||||||+.+.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999874
No 320
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.94 E-value=0.037 Score=57.48 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCchhhHhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig 476 (844)
-+++|+||+||||||+.+.|+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 321
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.91 E-value=0.042 Score=53.80 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.3
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+.+++|+||.||||||+.+.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999985
No 322
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.90 E-value=0.039 Score=54.60 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.2
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+++|+||+||||||+.+.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 323
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.86 E-value=0.048 Score=56.59 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=18.7
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+.|+||.|+|||++.+.|+.
T Consensus 31 ~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999999853
No 324
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.82 E-value=0.043 Score=54.18 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+.+++|+||.||||||+.+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 56789999999999999999853
No 325
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.79 E-value=0.046 Score=54.07 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=20.4
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+.+++|+||.||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46789999999999999999853
No 326
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.73 E-value=0.089 Score=64.41 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.5
Q ss_pred eEEEEEccCCCCchhhHhhhhhHH
Q 003142 456 RVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
..+.|+||+|+|||++.+.|+...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999996544
No 327
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.73 E-value=0.044 Score=53.82 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=18.9
Q ss_pred ceeEEEEecCceEEEEEccCCCCchhhHhhhhh
Q 003142 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 445 V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+..++++....--++|+|++|+|||||++.+..
T Consensus 13 ~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence 456777773333479999999999999998853
No 328
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.72 E-value=0.041 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=15.6
Q ss_pred ceEEEEEccCCCCchhhHhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
+.+++|+|+.||||||+.+.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999984
No 329
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.71 E-value=0.044 Score=53.37 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.6
Q ss_pred ceEEEEEccCCCCchhhHhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
+..++|+||.||||||+.+.++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999985
No 330
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.70 E-value=0.26 Score=65.05 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.7
Q ss_pred cCceEEEEEccCCCCchhhHhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..|+++.|.||.|+|||||...++.
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLqia~ 405 (2050)
T 3cmu_A 381 PMGRIVEIYGPESSGKTTLTLQVIA 405 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4678999999999999999888754
No 331
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.70 E-value=0.046 Score=53.14 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=18.8
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+++|+||.||||||+.+.|+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 332
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.64 E-value=0.044 Score=53.68 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=18.8
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+++|+||.||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999853
No 333
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.47 E-value=0.052 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.0
Q ss_pred CceEEEEEccCCCCchhhHhhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+.+++|+|+.||||||+.+.++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999853
No 334
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.33 E-value=0.055 Score=53.76 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.9
Q ss_pred CceEEEEEccCCCCchhhHhhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+.+++|+|+.||||||+.+.++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999853
No 335
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.31 E-value=0.29 Score=51.86 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=19.2
Q ss_pred eEEEEEccCCCCchhhHhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+++|+||-|+|||||++.+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHH
Confidence 678999999999999999874
No 336
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.19 E-value=0.055 Score=56.07 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.|.
T Consensus 24 I~lvG~~g~GKSSlin~l~ 42 (247)
T 3lxw_A 24 LILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 7899999999999999984
No 337
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.18 E-value=0.054 Score=53.53 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.8
Q ss_pred eEEEEEccCCCCchhhHhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+++|+|++|||||||+..|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998874
No 338
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.10 E-value=0.33 Score=55.25 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=19.4
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+-+.|.||.|+|||+|.|.|+.
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHh
Confidence 3478999999999999999964
No 339
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.04 E-value=0.17 Score=51.92 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=58.3
Q ss_pred cCceEEEEEccCCCCchhhHhhhhhHHHhhc-cc-cccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHH
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGLAVMMAK-SG-LHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 530 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~l~~~~q-~G-~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il 530 (844)
..|.+.+++||=|+||||.|--+..-..... .. ++-|. ...+.+ ...+..++|..-.. ...... ..++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~-~d~R~g-e~~i~s~~g~~~~a-~~~~~~-------~~~~ 95 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC-IDNRYS-EEDVVSHNGLKVKA-VPVSAS-------KDIF 95 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------------------CCE-EECSSG-------GGGG
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec-cCCcch-HHHHHhhcCCeeEE-eecCCH-------HHHH
Confidence 5688999999999999997765532222111 11 11122 111111 11233333321000 000000 0222
Q ss_pred HhCC-CCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccch-----------hHHhhhcccccee
Q 003142 531 SQST-SQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHG-----------ELKTLKYSNDFFE 592 (844)
Q Consensus 531 ~~a~-~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~-----------el~~~a~~~~~v~ 592 (844)
..+. +.++|++||--- +|+. +. .+++.+.+.|.. ||++-++. .|..+|+.+..+.
T Consensus 96 ~~~~~~~dvViIDEaQF-~~~~----~V-~~l~~l~~~~~~-Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 96 KHITEEMDVIAIDEVQF-FDGD----IV-EVVQVLANRGYR-VIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp GGCCSSCCEEEECCGGG-SCTT----HH-HHHHHHHHTTCE-EEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred HHHhcCCCEEEEECccc-CCHH----HH-HHHHHHhhCCCE-EEEEecccccccCccccHHHHHHhcccEEeee
Confidence 2232 479999999743 5552 22 345566667887 89988843 3445676655443
No 340
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.97 E-value=0.12 Score=55.29 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=18.7
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
-+.|+||.|+|||++.+.|..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCchHHHHHHHHHH
Confidence 478999999999999999854
No 341
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.91 E-value=0.067 Score=51.96 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=19.1
Q ss_pred eEEEEEccCCCCchhhHhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+++|+|+.||||||+.+.++
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999884
No 342
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.73 E-value=0.068 Score=60.44 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.7
Q ss_pred ceEEEEEccCCCCchhhHhhhhhH
Q 003142 455 TRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..+++|+||+|+||||+...|+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999999988654
No 343
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.72 E-value=0.068 Score=52.41 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.7
Q ss_pred ceEEEEEccCCCCchhhHhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
+.+++|+||.||||||+.+.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999985
No 344
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.71 E-value=0.16 Score=55.07 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=20.2
Q ss_pred CceEEEEEccCCCCchhhHhhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+..+.|.||.|.|||++.+.++.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345578999999999999999853
No 345
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.70 E-value=0.26 Score=59.86 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.9
Q ss_pred eEEEEEccCCCCchhhHhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig 476 (844)
+-+.|.||.|+|||+|.|.|+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 347999999999999999986
No 346
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.66 E-value=0.066 Score=57.15 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=17.3
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..+++|+||.||||||+.+.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999853
No 347
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.51 E-value=0.074 Score=51.79 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=18.8
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+++|+|+.||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999853
No 348
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.50 E-value=0.063 Score=51.47 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.8
Q ss_pred eEEEEEccCCCCchhhHhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+++|+|+.||||||+.+.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999985
No 349
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.48 E-value=0.084 Score=52.25 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=19.9
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
...+++|+||.||||||+.+.|+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999874
No 350
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.47 E-value=0.27 Score=53.13 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=19.8
Q ss_pred eEEEEEccCCCCchhhHhhhhhH
Q 003142 456 RVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
..+.+.||.|.||||+.+.++..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHH
Confidence 45899999999999999998643
No 351
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.39 E-value=0.56 Score=48.16 Aligned_cols=123 Identities=12% Similarity=0.152 Sum_probs=58.9
Q ss_pred cCceEEEEEccCCCCchh-hHhhhhhHHHhhc-cccccccccccccchhHHHhhhCCchhhHhhhhhhhhHHhhHHHHHH
Q 003142 453 RKTRVLVITGPNTGGKTI-CLKTVGLAVMMAK-SGLHILSSEYAKVPWFDSVFADIGDEQSLSQSLSTFSGHLKQIGNII 530 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTT-LLK~Ig~l~~~~q-~G~~vpa~~~~~i~~~~~i~~~ig~~q~i~~~lstfS~~~~rl~~il 530 (844)
..|.+.+|+||-|+|||| ||+.+--...-.+ ..++.|+ ...+.+ ...+.+++|..-... .+... .. +.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~-~D~R~~-~~~I~Sr~G~~~~a~-~v~~~-~d------i~ 95 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPA-IDDRYH-KEKVVSHNGNAIEAI-NISKA-SE------IM 95 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-------------CBTTBCCEEE-EESSG-GG------GG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEec-cCCcch-hhhHHHhcCCceeeE-EeCCH-HH------HH
Confidence 568999999999999999 7777522211111 1122232 111111 123444554321110 00000 00 01
Q ss_pred H-hCCCCcEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEccchhH-----------Hhhhcccccee
Q 003142 531 S-QSTSQSLVLLDEIGAGTNPLEGTALGMSLLEAFAESGSLLTIATTHHGEL-----------KTLKYSNDFFE 592 (844)
Q Consensus 531 ~-~a~~p~LLLLDEP~sGlDp~~~~al~~~Ile~L~~~g~t~vIitTHd~el-----------~~~a~~~~~v~ 592 (844)
. ...+.++|++||-=- +|+ .+.. .+..+.+.|.. ||+.-=+.++ ..+|+.+..+.
T Consensus 96 ~~i~~~~dvV~IDEaQF-f~~----~~v~-~l~~la~~gi~-Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~kl~ 162 (219)
T 3e2i_A 96 THDLTNVDVIGIDEVQF-FDD----EIVS-IVEKLSADGHR-VIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQ 162 (219)
T ss_dssp GSCCTTCSEEEECCGGG-SCT----HHHH-HHHHHHHTTCE-EEEEEESBCTTSCBCTTHHHHHHHCSEEEEEC
T ss_pred HHHhcCCCEEEEechhc-CCH----HHHH-HHHHHHHCCCE-EEEeecccccccCCCccHHHHHHhcceEEEee
Confidence 1 125789999999622 443 2332 34455678887 7776555443 34666665554
No 352
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.31 E-value=0.17 Score=53.23 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=18.4
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|.||.|+||||+.+.++.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 78999999999999999864
No 353
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.16 E-value=0.081 Score=52.91 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=17.9
Q ss_pred EEEEEccCCCCchhhHhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig 476 (844)
.++|+||.||||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999884
No 354
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.13 E-value=0.09 Score=54.84 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+.+++|+|+.||||||+.+.|+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999853
No 355
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.12 E-value=0.033 Score=55.14 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=23.5
Q ss_pred ceeEEEEe-cCceEEEEEccCCCCchhhHhhhh
Q 003142 445 VPIDIFIA-RKTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 445 V~~disl~-~~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
+..++++. ...+ ++|+|++|+|||||++.+.
T Consensus 15 ~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 15 VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHS
T ss_pred HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHh
Confidence 44455555 3444 7899999999999999984
No 356
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.12 E-value=0.083 Score=53.55 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.6
Q ss_pred ceEEEEEccCCCCchhhHhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
+.+++|+||.||||||+.+.|+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999985
No 357
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.07 E-value=0.087 Score=50.30 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=18.6
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++|+|+.||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999853
No 358
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.02 E-value=0.075 Score=58.65 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.0
Q ss_pred eEEEEEccCCCCchhhHhhhhhH
Q 003142 456 RVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.+++|+|+||+||||||+.+.+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 45899999999999999998643
No 359
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.98 E-value=0.087 Score=58.04 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=19.0
Q ss_pred EEEEccCCCCchhhHhhhhhH
Q 003142 458 LVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~l 478 (844)
++|+||+|+||||+.++|+..
T Consensus 27 i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999998643
No 360
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.95 E-value=0.083 Score=53.30 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.0
Q ss_pred eEEEEEccCCCCchhhHhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+++|+||.||||||+.+.|+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999985
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.85 E-value=0.096 Score=52.75 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.4
Q ss_pred CceEEEEEccCCCCchhhHhhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+.+++|+||.||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999853
No 362
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.82 E-value=0.08 Score=55.40 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=18.7
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++|+|++|+|||||++.+.+
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999999854
No 363
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.79 E-value=0.42 Score=49.15 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=21.9
Q ss_pred cCceEEEEEccCCCCchhhHhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..|.+++|.|+.||||||+.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999999853
No 364
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.74 E-value=0.082 Score=51.46 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.7
Q ss_pred eEEEEEccCCCCchhhHhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+++|+|+.||||||+-+.|+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999985
No 365
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.72 E-value=0.082 Score=59.59 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.9
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
-++|+|+||+|||||++.+.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g 202 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILN 202 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999999854
No 366
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.70 E-value=0.095 Score=52.47 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+||.||||||+.+.|+
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999884
No 367
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.50 E-value=0.1 Score=53.00 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=18.2
Q ss_pred EEEEEccCCCCchhhHhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig 476 (844)
+++|+||.||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999985
No 368
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.42 E-value=5.9 Score=35.34 Aligned_cols=70 Identities=11% Similarity=0.085 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003142 645 AEINEVIIEMERFKTQFLEHVHEARHFLMLSRNLHKNLLRTRRKILEHCASQRFRKVQKISDAAAIARSLVHKSAQQ 721 (844)
Q Consensus 645 ~~le~~i~~Le~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~e~~~~~~~~~~~~~~~a~~ea~~~l~~~~~e 721 (844)
..+-.-|..|+.+....+.++..+...+.+........+.....++.+.+.|.. .-..+|+.++..++++
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa-------sLFeEAN~MVa~ar~e 77 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA-------SLFDEANNMVADARKE 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555455555555555555554443332 3356778888776544
No 369
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.41 E-value=0.12 Score=51.30 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.0
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+.+++|+||.||||||+.+.|+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999985
No 370
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.34 E-value=0.09 Score=50.40 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=18.0
Q ss_pred EEEEEccCCCCchhhHhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig 476 (844)
-++|+|++|+|||||++.+.
T Consensus 20 ~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999884
No 371
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.10 E-value=0.11 Score=50.36 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.7
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++|+|+.|+|||||++.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999999853
No 372
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=89.95 E-value=0.13 Score=56.25 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=23.4
Q ss_pred cceeEEEEecCceEEEEEccCCCCchhhHhhhhhH
Q 003142 444 PVPIDIFIARKTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 444 ~V~~disl~~~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.++.++++.-+ .++|+|++|+||||||+.+.+.
T Consensus 25 ~~l~~i~~~lp--~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 25 SALPTLWDSLP--AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC----CCCC--EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccccCC--EEEEECCCCCcHHHHHHHHhCC
Confidence 35666766633 5899999999999999999654
No 373
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.86 E-value=0.12 Score=51.69 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.1
Q ss_pred cCceEEEEEccCCCCchhhHhhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
....+++|+|+-||||||+.+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999853
No 374
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.86 E-value=0.11 Score=50.32 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.1
Q ss_pred EEEEEccCCCCchhhHhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig 476 (844)
-++|+|++|+|||||++.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37999999999999999984
No 375
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.77 E-value=0.14 Score=52.93 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=19.4
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+++|+||.||||||+-+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998753
No 376
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.75 E-value=0.12 Score=54.60 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCCchhhHhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
..+++|+|+.||||||+.+.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999986
No 377
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.72 E-value=0.13 Score=49.28 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=19.1
Q ss_pred eEEEEEccCCCCchhhHhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+++|+|+-||||||+-+.|+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999985
No 378
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.66 E-value=0.13 Score=54.17 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.4
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+++|+||+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999853
No 379
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.60 E-value=0.099 Score=57.53 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+||+|||||+++|.
T Consensus 40 I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp EEECCCTTSCHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 5899999999999999974
No 380
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.47 E-value=0.11 Score=58.00 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=24.8
Q ss_pred EEEEe-cCceEEEEEccCCCCchhhHhhhhhHH
Q 003142 448 DIFIA-RKTRVLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 448 disl~-~~g~iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
|+.+. ..|+.++|+||+|+|||||++.|+...
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34444 456678999999999999999986543
No 381
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=89.43 E-value=0.72 Score=53.27 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.8
Q ss_pred ceEEEEEccCCCCchhhHhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.++++|+|+-|.|||||.+.+.
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~ 173 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQAL 173 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999998875
No 382
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=89.17 E-value=0.21 Score=60.02 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=19.7
Q ss_pred eEEEEEccCCCCchhhHhhhhhH
Q 003142 456 RVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.-++|+||.|+||||+.+.++..
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHH
Confidence 34689999999999999998653
No 383
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.16 E-value=0.58 Score=53.35 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=20.9
Q ss_pred CceEEEEEccCCCCchhhHhhhhhH
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
.|..++|.||+|+|||||++.|...
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhh
Confidence 3456899999999999999988543
No 384
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.08 E-value=0.15 Score=47.44 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999885
No 385
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.04 E-value=0.14 Score=47.89 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 8 i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6899999999999999984
No 386
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.98 E-value=0.18 Score=52.07 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=19.5
Q ss_pred ceEEEEEccCCCCchhhHhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
+.+++|+||.||||||+.+.|+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999985
No 387
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.97 E-value=0.15 Score=47.43 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++++|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.90 E-value=0.16 Score=50.95 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+||.||||||+.+.|+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999853
No 389
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.87 E-value=0.18 Score=51.41 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.7
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.|.+++|.||.||||||+.+.|.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999999984
No 390
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.52 E-value=0.18 Score=51.92 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=18.0
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.|.+++|.||.||||||+.+.|.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 56889999999999999999985
No 391
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.51 E-value=0.17 Score=47.23 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=17.4
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 392
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.50 E-value=0.53 Score=56.62 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEccCCCCchhhHhhhhhHH
Q 003142 457 VLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
.+.|+||.|+|||++.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997544
No 393
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.49 E-value=0.17 Score=47.47 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999874
No 394
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.45 E-value=0.17 Score=47.23 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 7 i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999984
No 395
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.40 E-value=0.17 Score=47.52 Aligned_cols=19 Identities=16% Similarity=0.171 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6899999999999999984
No 396
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.38 E-value=0.17 Score=48.01 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 12 i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEECCTTSCHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999984
No 397
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.38 E-value=0.17 Score=47.51 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6899999999999999874
No 398
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.34 E-value=0.17 Score=48.08 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 399
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.29 E-value=0.17 Score=47.44 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999884
No 400
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.27 E-value=0.33 Score=49.29 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=24.0
Q ss_pred ceeEEEEecCceEEEEEccCCCCchhhHhhh
Q 003142 445 VPIDIFIARKTRVLVITGPNTGGKTICLKTV 475 (844)
Q Consensus 445 V~~disl~~~g~iv~ItGPNGsGKTTLLK~I 475 (844)
.....-+...|..++|+||.|+|||||...+
T Consensus 24 ~lHa~~v~~~g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 24 SMHGVLVDIYGLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp CEESEEEEETTEEEEEECCCTTTTHHHHHHH
T ss_pred eeeEEEEEECCEEEEEECCCCCCHHHHHHHH
Confidence 3444445556788999999999999997766
No 401
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.24 E-value=0.18 Score=47.45 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6899999999999999874
No 402
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.16 E-value=0.18 Score=47.36 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6899999999999999984
No 403
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.08 E-value=0.18 Score=47.12 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999984
No 404
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=88.06 E-value=0.18 Score=47.83 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999984
No 405
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=88.06 E-value=0.18 Score=47.42 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999874
No 406
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.05 E-value=0.2 Score=56.18 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.0
Q ss_pred cCceEEEEEccCCCCchhhHhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
....+++|+||+||||||+.+.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999874
No 407
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=87.98 E-value=0.76 Score=53.10 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.2
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
+.++++|+||-|.|||||.+.+.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999998874
No 408
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=87.94 E-value=0.18 Score=48.83 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=18.6
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++|+|+.|+|||||++.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 379999999999999999853
No 409
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.93 E-value=0.19 Score=47.54 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 7899999999999999884
No 410
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.93 E-value=0.21 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCCchhhHhhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.|.+++|.||.||||||+.+.|..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999853
No 411
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.91 E-value=0.18 Score=48.52 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=18.0
Q ss_pred EEEEEccCCCCchhhHhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig 476 (844)
-++|+|+.|+|||||++.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999874
No 412
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=87.89 E-value=0.41 Score=56.36 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.8
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+++++|+||.|+||||++..+.
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll 185 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLL 185 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHH
Confidence 35678999999999999998774
No 413
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.85 E-value=0.21 Score=54.73 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.3
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+++|+||.||||||+-+.|+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4789999999999999988753
No 414
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=87.82 E-value=0.42 Score=54.96 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
-+.|.||.|+|||++.+.|+.
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGG
T ss_pred eeEeecCchHHHHHHHHHHHH
Confidence 478999999999999999964
No 415
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.80 E-value=0.19 Score=47.24 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 10 i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 10 ILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999984
No 416
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.77 E-value=0.56 Score=56.30 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.9
Q ss_pred EEEEEccCCCCchhhHhhhhhHH
Q 003142 457 VLVITGPNTGGKTICLKTVGLAV 479 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~l~ 479 (844)
.++|+||.|+|||++.+.++...
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 47899999999999999986543
No 417
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.71 E-value=0.22 Score=50.74 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.2
Q ss_pred ceEEEEEccCCCCchhhHhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
|.+++|.|+.||||||.++.+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~ 24 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVV 24 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999984
No 418
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.70 E-value=0.24 Score=47.06 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.6
Q ss_pred eEEEEEccCCCCchhhHhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig 476 (844)
..++|+|+.|+|||||++.+.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 447999999999999999984
No 419
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.69 E-value=0.22 Score=50.19 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=19.7
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
+..++|+||.||||||+.+.|+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999853
No 420
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.66 E-value=0.19 Score=48.22 Aligned_cols=19 Identities=16% Similarity=0.382 Sum_probs=17.4
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999874
No 421
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.64 E-value=0.23 Score=53.88 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.4
Q ss_pred ceEEEEEccCCCCchhhHhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
+.+++|+||+|+|||||.+.|+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHH
Confidence 4578999999999999998875
No 422
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.63 E-value=0.24 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCCchhhHhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
+.+++|.|+-||||||+.+.|+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4678999999999999999985
No 423
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=87.52 E-value=0.22 Score=47.26 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 12 i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998843
No 424
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.34 E-value=0.2 Score=50.10 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.8
Q ss_pred eEEEEEccCCCCchhhHhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+++|+|+.||||||+.+.++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999885
No 425
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.26 E-value=0.24 Score=53.86 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.9
Q ss_pred eEEEEEccCCCCchhhHhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+++|+||+||||||+-+.|+
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998875
No 426
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=87.23 E-value=0.2 Score=55.99 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=20.0
Q ss_pred ceEEEEEccCCCCchhhHhhhhhH
Q 003142 455 TRVLVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~l 478 (844)
+..++|+|+||+|||||++.+.+.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 345899999999999999999643
No 427
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=87.22 E-value=0.8 Score=36.79 Aligned_cols=46 Identities=28% Similarity=0.345 Sum_probs=34.3
Q ss_pred CCCCCCEEEEccC---CceEEEEEecCCCceEEEEEce----eEEEeecCCee
Q 003142 797 LPNVGDLVHVSSF---GKKGTVIKVEPSKEEIVVQVGN----MKWIMKFTDIV 842 (844)
Q Consensus 797 ~~~~Gd~V~v~~~---~~~G~V~~i~~~~~~~~Vq~G~----~k~~v~~~~l~ 842 (844)
.+++||.|+|.+. |..|+|.+++.+++++.|.+-. ..++++.++++
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~ve 56 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVV 56 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEE
Confidence 4789999999987 6889999998777788777643 34555555443
No 428
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.15 E-value=0.2 Score=52.83 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=18.8
Q ss_pred EEEEEccCCCCchhhHhhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++|+|++|+|||||++.+.+
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 479999999999999999853
No 429
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.15 E-value=0.22 Score=47.68 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 7 i~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999984
No 430
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.14 E-value=0.24 Score=48.13 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 28 i~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 78999999999999998743
No 431
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.13 E-value=0.22 Score=47.12 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 17 i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999874
No 432
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.07 E-value=0.23 Score=46.50 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999884
No 433
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.96 E-value=0.23 Score=48.34 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=17.1
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 23 i~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999998763
No 434
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=86.93 E-value=0.23 Score=47.60 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 14 i~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999984
No 435
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=86.92 E-value=0.23 Score=47.34 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 21 i~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999985
No 436
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.91 E-value=0.24 Score=49.10 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=18.1
Q ss_pred EEEEEccCCCCchhhHhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig 476 (844)
.++|+|+.|+|||||++.+.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999884
No 437
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.85 E-value=0.3 Score=49.97 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.8
Q ss_pred cCceEEEEEccCCCCchhhHhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
...++++|+||.||||||.-+.|+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999998875
No 438
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.80 E-value=0.28 Score=49.97 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.5
Q ss_pred CceEEEEEccCCCCchhhHhhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.+..++|+|+.||||||+.+.|+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999853
No 439
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.79 E-value=0.24 Score=46.32 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999843
No 440
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=86.75 E-value=0.28 Score=53.14 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.4
Q ss_pred ceEEEEEccCCCCchhhHhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
..+++|+||+|+|||||...++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHH
Confidence 3578999999999999998875
No 441
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.74 E-value=0.28 Score=50.96 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=20.8
Q ss_pred cCceEEEEEccCCCCchhhHhhhh
Q 003142 453 RKTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 453 ~~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
..+.+++|.|+-||||||+.+.|+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999985
No 442
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.68 E-value=0.24 Score=47.47 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 13 i~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999874
No 443
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=86.66 E-value=0.25 Score=46.80 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 18 i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 444
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=86.64 E-value=0.26 Score=47.44 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=17.3
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 17 i~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999998774
No 445
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.60 E-value=1.1 Score=48.01 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=19.4
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..+++.||.|.||||+.+.++.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999853
No 446
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=86.50 E-value=0.25 Score=48.70 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 26 i~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEECSTTSSHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999999884
No 447
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=86.39 E-value=0.27 Score=47.30 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 10 i~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999853
No 448
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.39 E-value=0.25 Score=47.65 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=17.9
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 10 i~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999998743
No 449
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.35 E-value=0.41 Score=47.62 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=22.9
Q ss_pred eeEEEEecCceEEEEEccCCCCchhhHhhh
Q 003142 446 PIDIFIARKTRVLVITGPNTGGKTICLKTV 475 (844)
Q Consensus 446 ~~disl~~~g~iv~ItGPNGsGKTTLLK~I 475 (844)
....-+.-.|.-++|+||+|+||||+.-.+
T Consensus 7 lHas~v~v~G~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 7 WHANFLVIDKMGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp EESEEEEETTEEEEEEESSSSSHHHHHHHH
T ss_pred EEEEEEEECCEEEEEEcCCCCCHHHHHHHH
Confidence 333444556788999999999999987655
No 450
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.35 E-value=0.26 Score=46.77 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 9 i~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 68999999999999999853
No 451
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=86.32 E-value=0.31 Score=48.51 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.1
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..++|+|+.|+|||||++.+..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999988753
No 452
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=86.28 E-value=0.26 Score=47.15 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 21 i~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999874
No 453
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.19 E-value=0.27 Score=47.51 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=17.7
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 24 i~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999985
No 454
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.12 E-value=0.28 Score=46.73 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 15 i~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999874
No 455
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=86.09 E-value=0.27 Score=47.96 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 17 i~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 456
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.95 E-value=0.28 Score=46.63 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 13 i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999874
No 457
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=85.82 E-value=0.28 Score=46.82 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 9 i~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 9 IAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999874
No 458
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=85.76 E-value=0.33 Score=49.62 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.2
Q ss_pred CceEEEEEccCCCCchhhHhhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.|.+++|.||.||||||..+.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999853
No 459
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=85.71 E-value=0.29 Score=47.88 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999874
No 460
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=85.65 E-value=0.29 Score=47.28 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 19 i~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999884
No 461
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.58 E-value=0.3 Score=46.60 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=17.4
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 8 i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999874
No 462
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=85.53 E-value=0.3 Score=46.96 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=18.1
Q ss_pred EEEEEccCCCCchhhHhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig 476 (844)
-++|+|+.|+|||||++.+.
T Consensus 20 ~i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999984
No 463
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.36 E-value=0.31 Score=47.28 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 11 i~vvG~~~~GKSsli~~l~ 29 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFV 29 (199)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999984
No 464
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=85.15 E-value=0.31 Score=47.17 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp EEEEECTTSSHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999853
No 465
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=85.15 E-value=0.32 Score=47.40 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 26 i~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 7899999999999999984
No 466
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=85.03 E-value=0.32 Score=47.83 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6899999999999999884
No 467
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=84.93 E-value=0.33 Score=46.95 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 25 i~vvG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 468
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.75 E-value=0.34 Score=48.16 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 29 i~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999874
No 469
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.60 E-value=0.35 Score=46.97 Aligned_cols=20 Identities=35% Similarity=0.328 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999998854
No 470
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=84.59 E-value=0.35 Score=47.15 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999853
No 471
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=84.54 E-value=0.35 Score=46.93 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 24 i~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 7899999999999999884
No 472
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.53 E-value=0.35 Score=46.67 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=18.1
Q ss_pred EEEEEccCCCCchhhHhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig 476 (844)
-++|+|+.|+|||||++.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37999999999999999884
No 473
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=84.52 E-value=0.36 Score=45.95 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999874
No 474
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=84.51 E-value=0.31 Score=46.63 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=8.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEECCCCC----------
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999884
No 475
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.38 E-value=0.44 Score=52.13 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.1
Q ss_pred CceEEEEEccCCCCchhhHhhhh
Q 003142 454 KTRVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 454 ~g~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+.+++|+||.|+|||||-+.|+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999988875
No 476
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=84.36 E-value=1.8 Score=43.11 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=17.6
Q ss_pred EEEEEccCCCCchhhHhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig 476 (844)
+++|=|+-||||||.++.|.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~ 21 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46788999999999999984
No 477
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=84.35 E-value=0.19 Score=52.01 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=18.4
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+||.|+||||+.+.++.
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999964
No 478
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=84.24 E-value=0.37 Score=46.40 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 18 i~v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 479
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=84.14 E-value=0.37 Score=47.29 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (206)
T 2bcg_Y 11 LLLIGNSGVGKSCLLLRFS 29 (206)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999874
No 480
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=84.11 E-value=0.38 Score=47.04 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYA 29 (203)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999874
No 481
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=84.10 E-value=0.37 Score=47.23 Aligned_cols=20 Identities=30% Similarity=0.174 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 27 i~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999853
No 482
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=84.10 E-value=0.48 Score=53.52 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.9
Q ss_pred eEEEEEccCCCCchhhHhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig 476 (844)
..++|+|+.|+|||||++.+.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~ 44 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIA 44 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHE
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 358999999999999999984
No 483
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=84.08 E-value=0.38 Score=46.52 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999874
No 484
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=84.08 E-value=0.41 Score=47.79 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=18.8
Q ss_pred eEEEEEccCCCCchhhHhhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
..++|+|+.|+|||||+..+..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999998743
No 485
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=84.08 E-value=0.39 Score=46.54 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=18.1
Q ss_pred EEEEEccCCCCchhhHhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig 476 (844)
-++|+|+.|+|||||++.+.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47999999999999999984
No 486
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=84.04 E-value=0.38 Score=46.71 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 26 i~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 78999999999999999843
No 487
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=83.97 E-value=0.38 Score=53.16 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=18.8
Q ss_pred EEEEccCCCCchhhHhhhhhH
Q 003142 458 LVITGPNTGGKTICLKTVGLA 478 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~l 478 (844)
++|+|++|+|||||++.+...
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998643
No 488
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=83.91 E-value=0.39 Score=46.55 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 25 i~v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999984
No 489
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.91 E-value=0.39 Score=46.82 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 31 i~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 31 LAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998743
No 490
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=83.86 E-value=0.37 Score=46.39 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999853
No 491
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=83.77 E-value=0.4 Score=46.92 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 32 i~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 32 ILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999999999874
No 492
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=83.73 E-value=0.47 Score=47.89 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.0
Q ss_pred ceEEEEEccCCCCchhhHhhhhh
Q 003142 455 TRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 455 g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
|.+++|=|+-||||||..+.|..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 46789999999999999998853
No 493
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=83.66 E-value=0.4 Score=46.91 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=17.6
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 31 i~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 31 IVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999884
No 494
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=83.51 E-value=0.47 Score=53.13 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.9
Q ss_pred eEEEEEccCCCCchhhHhhhh
Q 003142 456 RVLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 456 ~iv~ItGPNGsGKTTLLK~Ig 476 (844)
.+++|+||.|+|||||.+.|+
T Consensus 3 ~~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHH
Confidence 578999999999999998875
No 495
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=83.51 E-value=0.45 Score=48.12 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.8
Q ss_pred EEEEEccCCCCchhhHhhhh
Q 003142 457 VLVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 457 iv~ItGPNGsGKTTLLK~Ig 476 (844)
+++|+||.||||+|.-+.|+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999885
No 496
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=83.49 E-value=0.42 Score=46.91 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHhhhh
Q 003142 458 LVITGPNTGGKTICLKTVG 476 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig 476 (844)
++|+|+.|+|||||++.+.
T Consensus 9 v~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999874
No 497
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.46 E-value=0.34 Score=47.89 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=20.9
Q ss_pred cceeEEEEec-CceEEEEEccCCCCchhhHhhhhh
Q 003142 444 PVPIDIFIAR-KTRVLVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 444 ~V~~disl~~-~g~iv~ItGPNGsGKTTLLK~Ig~ 477 (844)
.++.++.+.. ..--++|+|+.|+|||||++.+..
T Consensus 13 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 13 LGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp ------CGGGSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccccccccccCcEEEEECcCCCCHHHHHHHHhc
Confidence 3455555552 222478999999999999998843
No 498
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=83.44 E-value=0.41 Score=47.59 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 31 i~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999998853
No 499
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=83.38 E-value=0.42 Score=46.60 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhHhhhhh
Q 003142 458 LVITGPNTGGKTICLKTVGL 477 (844)
Q Consensus 458 v~ItGPNGsGKTTLLK~Ig~ 477 (844)
++|+|+.|+|||||++.+..
T Consensus 23 i~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 23 CVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998853
No 500
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=83.37 E-value=4 Score=33.86 Aligned_cols=47 Identities=26% Similarity=0.185 Sum_probs=40.1
Q ss_pred CCCCCCEEEEc-cCC--ceEEEEEecCCCceEEEEEc-eeEEEeecCCeee
Q 003142 797 LPNVGDLVHVS-SFG--KKGTVIKVEPSKEEIVVQVG-NMKWIMKFTDIVT 843 (844)
Q Consensus 797 ~~~~Gd~V~v~-~~~--~~G~V~~i~~~~~~~~Vq~G-~~k~~v~~~~l~~ 843 (844)
.+++||.|+.. +-| -.|+|++|...++..+|++. +.+.+|-.+||..
T Consensus 13 ~f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~kdi~~ 63 (66)
T 2eqj_A 13 KFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQT 63 (66)
T ss_dssp CSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEEC
T ss_pred cccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEeecccc
Confidence 58999999988 444 55999999988889999985 8999999999863
Done!