BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003144
(844 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine: Re-Refined
Length = 464
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/451 (44%), Positives = 284/451 (62%), Gaps = 33/451 (7%)
Query: 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKL 119
A ++R+ F FFE K H KS+P+VP NDPTLLF NAGM +K +FLG +
Sbjct: 4 AHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGL-----EKRPY 58
Query: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVY 179
RA + QKC+R GKHNDL+ VG + HHTFFEMLGN+SFGDYFK EAIE+AWE +T+V
Sbjct: 59 KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVL 118
Query: 180 RLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCG 237
+LP ++LY + + DE EA IW + +P+ R+ G +DNFW+MGD GPCG
Sbjct: 119 KLPKEKLYVSVYKDDE--------EAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCG 170
Query: 238 PCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297
P SEI+ DR + D +EIWN+VF+Q+NR+ +G L PLP ++DTG+G E
Sbjct: 171 PSSEIYVDRGEEYEG-------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 223
Query: 298 RLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTL 357
R+ S+LQ K SN++ D+ P+ ++ +G + Y K + D+A RV+ADH+R +
Sbjct: 224 RIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGEKF------ETDVALRVIADHLRAI 276
Query: 358 SFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELK 417
+FAI+DG P NEGR YV+RRILRRA+R+G + L ++ F V++VV +M + +PEL+
Sbjct: 277 TFAISDGVIPSNEGRGYVIRRILRRAMRFGYK-LGIENPFLYKGVDLVVDIMKEPYPELE 335
Query: 418 QXXXXXXXXXXXXXXSFGKTLLKGIEKFKKAAQDV--QG-KVLSGQDAFILWDTYGFPLD 474
F KTL G+E ++ Q +G K LSG++ F +DTYGFP+D
Sbjct: 336 LSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVD 395
Query: 475 LTQLMAEERGLLVDIEGFNNAMDEARERSRS 505
L +A E+GL +D+EGF ++E RER+R
Sbjct: 396 LIDEIAREKGLGIDLEGFQCELEEQRERARK 426
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine
Length = 465
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/451 (44%), Positives = 284/451 (62%), Gaps = 33/451 (7%)
Query: 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKL 119
A ++R+ F FFE K H KS+P+VP NDPTLLF NAGM +K +FLG +
Sbjct: 5 AHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGL-----EKRPY 59
Query: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVY 179
RA + QKC+R GKHNDL+ VG + HHTFFEMLGN+SFGDYFK EAIE+AWE +T+V
Sbjct: 60 KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVL 119
Query: 180 RLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCG 237
+LP ++LY + + DE EA IW + +P+ R+ G +DNFW+MGD GPCG
Sbjct: 120 KLPKEKLYVSVYKDDE--------EAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCG 171
Query: 238 PCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297
P SEI+ DR + D +EIWN+VF+Q+NR+ +G L PLP ++DTG+G E
Sbjct: 172 PSSEIYVDRGEEYEG-------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 224
Query: 298 RLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTL 357
R+ S+LQ K SN++ D+ P+ ++ +G + Y K + D+A RV+ADH+R +
Sbjct: 225 RIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGEKF------ETDVALRVIADHLRAI 277
Query: 358 SFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELK 417
+FAI+DG P NEGR YV+RRILRRA+R+G + L ++ F V++VV +M + +PEL+
Sbjct: 278 TFAISDGVIPSNEGRGYVIRRILRRAMRFGYK-LGIENPFLYKGVDLVVDIMKEPYPELE 336
Query: 418 QXXXXXXXXXXXXXXSFGKTLLKGIEKFKKAAQDV--QG-KVLSGQDAFILWDTYGFPLD 474
F KTL G+E ++ Q +G K LSG++ F +DTYGFP+D
Sbjct: 337 LSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVD 396
Query: 475 LTQLMAEERGLLVDIEGFNNAMDEARERSRS 505
L +A E+GL +D+EGF ++E RER+R
Sbjct: 397 LIDEIAREKGLGIDLEGFQCELEEQRERARK 427
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 390 bits (1002), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/458 (45%), Positives = 277/458 (60%), Gaps = 38/458 (8%)
Query: 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTR 121
++R F FF K H SS +VP NDPTLLF NAGMNQ+K +FLG N +R
Sbjct: 6 EIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRN-----YSR 60
Query: 122 ACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLT--KVY 179
A +Q+C+RAGGKHNDL++VG HHTFFEMLGN+SFGDYFK +AI +AW LLT K +
Sbjct: 61 ATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWF 120
Query: 180 RLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASRVLPFG-------CKDNFWEM 230
LP +RL+ T + D+EA +IW K +P R++ G DNFW+M
Sbjct: 121 ALPKERLWVTVY--------ESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQM 172
Query: 231 GDTGPCGPCSEIHYDRTGN--RDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAK 288
GDTGPCGPC+EI YD + D IEIWNIVF+QFNR++DG+++PLP
Sbjct: 173 GDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKP 232
Query: 289 HVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYR 348
VDTG+G ER+ ++LQ+ SNYD D+F + A+ + TGA S K + R
Sbjct: 233 SVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK-----------SLR 281
Query: 349 VVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKV 408
V+ADHIR+ +F IADG P NE R YVLRRI+RRAVR+G+ +L A++ FF LV ++ V
Sbjct: 282 VIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDV 340
Query: 409 MGDVFPELKQXXXXXXXXXXXXXXSFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468
MG +LK+ F +TL +G+ + + G L G+ AF L+DT
Sbjct: 341 MGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDT 400
Query: 469 YGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSA 506
YGFP+DLT + ER + VD GF AM+E R R+R A
Sbjct: 401 YGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/458 (45%), Positives = 276/458 (60%), Gaps = 38/458 (8%)
Query: 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTR 121
++R F FF K H SS +VP NDPTLLF NAGMNQ+K +FLG N +R
Sbjct: 6 EIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRN-----YSR 60
Query: 122 ACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLT--KVY 179
A +Q+C+RAGGKHNDL++VG HHTFFEMLGN+SFGDYFK +AI +AW LLT K +
Sbjct: 61 ATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWF 120
Query: 180 RLPADRLYATYFGGDEKAGLAPDNEARDIWLK--FLPASRVLPFG-------CKDNFWEM 230
LP +RL+ T + D+EA +IW K +P R++ G DNFW+M
Sbjct: 121 ALPKERLWVTVY--------ESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQM 172
Query: 231 GDTGPCGPCSEIHYDRTGN--RDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAK 288
GDTGPCGPC+EI YD + D IEIWNIVF+QFNR++DG+++PLP
Sbjct: 173 GDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKP 232
Query: 289 HVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYR 348
VDT +G ER+ ++LQ+ SNYD D+F + A+ + TGA S K + R
Sbjct: 233 SVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNK-----------SLR 281
Query: 349 VVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKV 408
V+ADHIR+ +F IADG P NE R YVLRRI+RRAVR+G+ +L A++ FF LV ++ V
Sbjct: 282 VIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDV 340
Query: 409 MGDVFPELKQXXXXXXXXXXXXXXSFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468
MG +LK+ F +TL +G+ + + G L G+ AF L+DT
Sbjct: 341 MGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDT 400
Query: 469 YGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSA 506
YGFP+DLT + ER + VD GF AM+E R R+R A
Sbjct: 401 YGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 359 bits (921), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 198/451 (43%), Positives = 276/451 (61%), Gaps = 33/451 (7%)
Query: 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKL 119
A ++R+ F FFE K H KS+P+VP NDPTLLF NAG +K +FLG +
Sbjct: 5 AHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGXVPFKNVFLGL-----EKRPY 59
Query: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVY 179
RA + QKC+R GKHNDL+ VG + HHTFFE LGN+SFGDYFK EAIE+AWE +T+V
Sbjct: 60 KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEXLGNFSFGDYFKKEAIEYAWEFVTEVL 119
Query: 180 RLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCG 237
+LP ++LY + + DE EA IW + +P+ R+ G +DNFW+ GD GPCG
Sbjct: 120 KLPKEKLYVSVYKDDE--------EAYRIWNEHIGIPSERIWRLGEEDNFWQXGDVGPCG 171
Query: 238 PCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297
P SEI+ DR + D +EIWN+VF Q+NR+ +G L PLP ++DTG G E
Sbjct: 172 PSSEIYVDRGEEYEG-------DERYLEIWNLVFXQYNRDENGVLTPLPHPNIDTGXGLE 224
Query: 298 RLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTL 357
R+ S+LQ K SN++ D+ P+ ++ +G + Y K + D+A RV+ADH+R +
Sbjct: 225 RIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGEKF------ETDVALRVIADHLRAI 277
Query: 358 SFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELK 417
+FAI+DG P NEGR YV+RRILRRA R+G + L ++ F V++VV + + +PEL+
Sbjct: 278 TFAISDGVIPSNEGRGYVIRRILRRAXRFGYK-LGIENPFLYKGVDLVVDIXKEPYPELE 336
Query: 418 QXXXXXXXXXXXXXXSFGKTLLKGIEKFKKAAQDV--QG-KVLSGQDAFILWDTYGFPLD 474
F KTL G E ++ Q +G K LSG++ F +DTYGFP+D
Sbjct: 337 LSREFVKGIVKGEEKRFIKTLKAGXEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVD 396
Query: 475 LTQLMAEERGLLVDIEGFNNAMDEARERSRS 505
L +A E+GL +D+EGF ++E RER+R
Sbjct: 397 LIDEIAREKGLGIDLEGFQCELEEQRERARK 427
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 172 bits (435), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 194/794 (24%), Positives = 320/794 (40%), Gaps = 170/794 (21%)
Query: 62 KVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKP-IFLGTADPNTQLS 117
++R+ F +FFE H K PV+P +L A + ++P + G ADP
Sbjct: 61 EMREKFLRFFEKHEIYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA--- 117
Query: 118 KLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAW 172
+Q IR D+D+VG H T FEM+ + +F Y+ +E +E A+
Sbjct: 118 --NPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAF 171
Query: 173 ELLTKVYRL-PADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMG 231
E TK ++ P D + K+N W G
Sbjct: 172 EFFTKELKMKPEDITF------------------------------------KENPWAGG 195
Query: 232 DTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLK-------- 283
G GP E+ Y +E+ +VF+Q+ + + + +
Sbjct: 196 --GNAGPAFEVLY-----------------RGLEVATLVFMQYKKAPENAPQDQVVVIKG 236
Query: 284 ----PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADD 339
P+ K VDTG G ERL + Q + YD V + + +++ G K+ ++
Sbjct: 237 EKYIPMETKVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLKKMAGIEKIDEKILMEN 295
Query: 340 A---------DKVDMAY-------RV-------------------VADHIRTLSFAIADG 364
+ D D+ Y RV +ADH + L+F +ADG
Sbjct: 296 SRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADG 355
Query: 365 SCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQXXXXXX 424
P N Y+ R ++R+++R+ E+ + + +V + +K + FPE K+
Sbjct: 356 VVPSNVKAGYLARLLIRKSIRHLREL--GLEVPLSEIVALHIKELHKTFPEFKEMEDIIL 413
Query: 425 XXXXXXXXSFGKTLLKGIEKFKKAAQDVQGKVLSG---QDAFILWDTYGFPLDLTQLMAE 481
+ +TL +G + ++ ++ K + + ++++G ++ + +AE
Sbjct: 414 EMIELEEKKYAETLRRGSDLVRREIAKLKKKGIKEIPVEKLVTFYESHGLTPEIVKEIAE 473
Query: 482 ERGLLVDI-EGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI 540
+ G+ V+I + F + + + ER+ K+ G ++D + L L +D F
Sbjct: 474 KEGVKVNIPDNFYSMVAKEAERT-----KEEKGEELVDFELLKDLPDTRRLYYEDPFM-- 526
Query: 541 WFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYV 600
EF V+ + ++L +++FY E GGQ +D G + V
Sbjct: 527 ---------------KEFDAKVLRVIKDWVILDATAFYPEGGGQPYDTGVLIVNGREVKV 571
Query: 601 RNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLG 660
NVQ G +IH E G F G V K+D+ RR +HT TH+L AL VLG
Sbjct: 572 TNVQKVGKVIIH---KVEDPGAFKEGMIVHGKIDWKRRIQHMRHHTGTHVLMGALVRVLG 628
Query: 661 DHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCI 720
HV Q GS + + R D SH K + E L+ IE + N + + V + A+
Sbjct: 629 RHVWQAGSQLTTDWARLDISHYKRISEEELKEIEMLANRIVMEDRKVTWEWLPRTTAEQK 688
Query: 721 NGLRAVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFA 779
G R G V P +RVV K+ED W + CGGTHL +T
Sbjct: 689 YGFRLYQGGVVPGREIRVV----KIED---------W---DVQACGGTHLPSTGLVGPIK 732
Query: 780 LLSEEGIAKGIRRI 793
+L E I G+ RI
Sbjct: 733 ILRTERIQDGVERI 746
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
Length = 752
Score = 139 bits (350), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 185/792 (23%), Positives = 306/792 (38%), Gaps = 166/792 (20%)
Query: 62 KVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKP-IFLGTADPNTQLS 117
++R+ F +FFE H PV+P +L A + ++P + G ADP
Sbjct: 61 EMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPL 120
Query: 118 KLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAW 172
++ Q IR D+D+VG H T FEM+ + +F Y+ +E +E A+
Sbjct: 121 VIS-----QPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAF 171
Query: 173 ELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGD 232
E TK + + P++ K+N W G
Sbjct: 172 EFFTK------------------ELXMXPED-----------------ITFKENPWAGG- 195
Query: 233 TGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLK--------- 283
G GP E+ Y +E+ +VF+Q+ + + +
Sbjct: 196 -GNAGPAFEVLY-----------------RGLEVATLVFMQYXXAPENAPQDQVVVIXGE 237
Query: 284 ---PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDA 340
P+ VDTG G ERL + Q + YD V + + + G K+ +++
Sbjct: 238 KYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENS 296
Query: 341 ---------DKVDMAY-------RV-------------------VADHIRTLSFAIADGS 365
D D+ Y RV +ADH + L+F +ADG
Sbjct: 297 RLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGV 356
Query: 366 CPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQXXXXXXX 425
P N Y+ R ++R+++R+ E+ + + +V + + + FPE +
Sbjct: 357 VPSNVXAGYLARLLIRKSIRHLREL--GLEVPLSEIVALHIXELHKTFPEFXEMEDIILE 414
Query: 426 XXXXXXXSFGKTLLKGIEKFKKAAQDVQGKVLSG---QDAFILWDTYGFPLDLTQLMAEE 482
+ +TL +G + ++ ++ K + + ++++G ++ +AE+
Sbjct: 415 MIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEK 474
Query: 483 RGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWF 542
G+ V+I +M A+E R+ + K G ++D + L L +D F
Sbjct: 475 EGVKVNIPDNFYSM-VAKEAERTKEEK---GEELVDFELLKDLPDTRRLYYEDPFM---- 526
Query: 543 QDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRN 602
EF V+ ++L +++FY E GGQ +D G + V N
Sbjct: 527 -------------XEFDAXVLRVIXDWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTN 573
Query: 603 VQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDH 662
VQ G +IH E G F G V +D+ RR +HT TH+L AL VLG H
Sbjct: 574 VQXVGXVIIH---XVEDPGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRH 630
Query: 663 VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCING 722
V Q GS + + R D SH + E L IE + N + + V + A+ G
Sbjct: 631 VWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYG 690
Query: 723 LRAVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALL 781
R G V P +RVV I ++W + GGTHL +T +L
Sbjct: 691 FRLYQGGVVPGREIRVVXI-------------EDW---DVQAXGGTHLPSTGLVGPIXIL 734
Query: 782 SEEGIAKGIRRI 793
E I G+ RI
Sbjct: 735 RTERIQDGVERI 746
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 191/791 (24%), Positives = 298/791 (37%), Gaps = 187/791 (23%)
Query: 64 RDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP-IFLGTADPNTQLSKLTRA 122
R+ + FFE + H + PVV + A + ++P + G A P ++
Sbjct: 66 REYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLTIS-- 123
Query: 123 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLTK 177
Q CIR +DLD VG+ H T FE + +F Y+KNE + + ELL +
Sbjct: 124 ---QPCIRL----DDLDSVGRTGRHLTLFEXXAHHAFNYPGKEIYWKNETVAYCTELLNE 176
Query: 178 VYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCG 237
+ D +Y K+ W G G G
Sbjct: 177 LGVKKEDIVY------------------------------------KEEPWAGG--GNAG 198
Query: 238 PCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKH-------V 290
PC E ++V +E+ +VF +G ++ A++ V
Sbjct: 199 PCLE------------AIVGG-----LEVATLVFXNLEEHPEGDIEIKGARYRKXDNYIV 241
Query: 291 DTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATG----------------ARPYSGK 334
DTG G ER + + YD +F + D I + + +G
Sbjct: 242 DTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGI 300
Query: 335 VGADDADKVDMAYRVVAD------------------------HIRTLSFAIADGSCPGNE 370
G ++++ + VAD H R + F + DG P N
Sbjct: 301 XGELRGERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFXLGDGLVPSNA 360
Query: 371 GREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMG---DVFPELKQXXXXXXXXX 427
G Y+ R +RR++R E+ D + LV K++G DV Q
Sbjct: 361 GAGYLARLXIRRSLRLAEELELGLDLY--DLVEXHKKILGFEFDVPLSTVQEILELEKER 418
Query: 428 XXXXXSFGKTLL-KGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLL 486
S G L+ + +E+ KK +D D L+D++G P++L +A E+G
Sbjct: 419 YRTTVSKGTRLVERLVERKKKLEKD---------DLIELYDSHGIPVELAVGIAAEKGAE 469
Query: 487 VDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHK 546
V+ D A L KR A K I Q+
Sbjct: 470 VE----------------------------XPKDIYAELAKRHSKAEKVQEKKITLQNEY 501
Query: 547 SVIKAIY----TGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRN 602
+ +Y T EF V+ ++L S+FY E GGQ D G++ G F V +
Sbjct: 502 PATEKLYYDDPTLLEFEAEVIGVEGDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVD 561
Query: 603 VQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDH 662
V G V+H+ +GA + VG +V +D D R +H+ TH+L ++L++VLG+H
Sbjct: 562 VLEADGVVLHV---VKGA-KPEVGTKVKGVIDSDVRWRHXRHHSATHVLLYSLQKVLGNH 617
Query: 663 VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCING 722
V Q G+ K R D +H + E ++ IE + N +I A + + EA+ G
Sbjct: 618 VWQAGARKEFSKARLDVTHFRRPSEEEIKEIEXLANREILANKPIKWEWXDRIEAERKFG 677
Query: 723 LRAVFGEVYPD-PVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALL 781
R G V P +RVV +G V + CGGTH +T E +L
Sbjct: 678 FRLYQGGVPPGRKIRVVQVGDDV-----------------QACGGTHCRSTGEIGXLKIL 720
Query: 782 SEEGIAKGIRR 792
E I G+ R
Sbjct: 721 KVESIQDGVIR 731
>pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From
Pyrococcus Horikoshii
Length = 216
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 44/226 (19%)
Query: 569 GIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEE 628
I+L + FY GGQ D G I G V + +Y ++ + + +F VG+E
Sbjct: 29 AILLDQTIFYPTGGGQPHDRGTING------VEVLDVYKDEEGNVWHVVKEPEKFKVGDE 82
Query: 629 VICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQ-KGSVVLPEKLRFDFSHGKPVDP 687
V K+D+D R + HT H+L L EVLG+ Q GS + EK R+D ++ P
Sbjct: 83 VELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAY-----P 137
Query: 688 EHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDL 747
E+L + + EQI + + + E GE V++ G +
Sbjct: 138 ENLNKYK----EQIISLFNKYVDEG---------------GE-----VKIWWEGDRRYTQ 173
Query: 748 LADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRI 793
+ D E CGGTH+ + +E L I +G +R+
Sbjct: 174 IRDFE--------VIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRL 211
>pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase
pdb|1TKE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Serine
pdb|1TKG|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|1TKY|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Seryl-3'-aminoadenosine
Length = 224
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 16/144 (11%)
Query: 645 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 704
H+C H+L A+++ L H V+ +D + + E + +E ++E +
Sbjct: 73 HSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKN 131
Query: 705 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAE-- 762
DV K+ + EA+ R GE Y +V + + ++K L E
Sbjct: 132 YDVIKKKVSWHEARETFANR---GESY----KVSILDENIAH-----DDKPGLYFHEEYV 179
Query: 763 -LCGGTHLSNTREAEAFALLSEEG 785
+C G H+ N R F L+ G
Sbjct: 180 DMCRGPHVPNMRFCHHFKLMKTAG 203
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 10/141 (7%)
Query: 645 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 704
H+C H+L A+++ L H V+ +D + + E + +E ++E +
Sbjct: 73 HSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEKN 131
Query: 705 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELC 764
DV K+ + EA+ R GE Y + I + L E ++C
Sbjct: 132 YDVIKKKVSWHEARETFANR---GESYKVSILDENIAHDDKPGLYFHEE------YVDMC 182
Query: 765 GGTHLSNTREAEAFALLSEEG 785
G H+ N R F L+ G
Sbjct: 183 RGPHVPNMRFCHHFKLMKTAG 203
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 42/216 (19%)
Query: 645 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIE----SIVNEQ 700
H+ H++ A++ + G+ V V+ +DF + + + +IE IVNE
Sbjct: 75 HSTAHLMAHAIKRLYGN-VKFGVGPVIEGGFYYDFDIDQNISSDDFEQIEKTMKQIVNEN 133
Query: 701 IKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSIS 760
+K E V S++ EAK E++ + K+E + A PE++ S
Sbjct: 134 MKIERKVVSRD----EAK----------ELFSND------EYKLELIDAIPEDENVTLYS 173
Query: 761 ----AELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTGLAYKAFEAAC 809
+LC G H+ +T + + F LLS G K ++RI T K +A
Sbjct: 174 QGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYG-TAFFDKKELKAHL 232
Query: 810 SL--EKEVDDASKIEGSLLEKVCSSGYF--SLSLWL 841
+ E++ D KI G LE +S L LWL
Sbjct: 233 QMLEERKERDHRKI-GKELELFTNSQLVGAGLPLWL 267
>pdb|2GZ6|A Chain A, Crystal Structure Of Anabaena Sp. Ch1
N-Acetyl-D-Glucosamine 2- Epimerase At 2.0 A
pdb|2GZ6|B Chain B, Crystal Structure Of Anabaena Sp. Ch1
N-Acetyl-D-Glucosamine 2- Epimerase At 2.0 A
Length = 388
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 639 KLIAPNHTCTHMLNFALREVLGDHVDQKGSV----VLPEKLRFDFSHGKPVDPEH 689
+ + P T ++L ++EV+GD +DQ+ + V P+ D G+ ++P H
Sbjct: 185 EWLLPQETLENVLAATVQEVMGDFLDQEQGLMYENVAPDGSHIDCFEGRLINPGH 239
>pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit R2
Length = 332
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 18/90 (20%)
Query: 678 DFSHGKPVDPEHLRRI----------ESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF 727
D H + + PE I + IVNE + ++ FS+E + EA+C G +
Sbjct: 55 DIQHWESLKPEERYFISHVLAFFAASDGIVNENL---VERFSQEVQITEARCFYGFQIAM 111
Query: 728 GEVYPDPVRVVAIGRKVEDLLADPENKEWL 757
++ + ++ ++ + DP+ +E+L
Sbjct: 112 ENIHSEMYSLL-----IDTYIKDPKEREFL 136
>pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|C Chain C, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|D Chain D, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
Length = 286
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 18/90 (20%)
Query: 678 DFSHGKPVDPEHLRRI----------ESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF 727
D H + + PE I + IVNE + ++ FS+E + EA+C G +
Sbjct: 48 DIQHWESLKPEERYFISHVLAFFAASDGIVNENL---VERFSQEVQITEARCFYGFQIAM 104
Query: 728 GEVYPDPVRVVAIGRKVEDLLADPENKEWL 757
++ + ++ ++ + DP+ +E+L
Sbjct: 105 ENIHSEMYSLL-----IDTYIKDPKEREFL 129
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Oxidizing Conditions. A Fully Occupied
Dinuclear Iron Cluster.
pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Reducing Conditions. A Fully Occupied
Dinuclear Iron Cluster And Bound Acetate.
pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
Length = 390
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 696 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKE 755
IVNE + ++ FS+E + EA+C G + ++ + ++ ++ + DP+ +E
Sbjct: 141 IVNENL---VERFSQEVQVTEARCFYGFQIAMENIHSEMYSLL-----IDTYIKDPKERE 192
Query: 756 WL 757
+L
Sbjct: 193 YL 194
>pdb|4DJN|A Chain A, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
pdb|4DJN|B Chain B, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
Length = 311
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 696 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKE 755
IVNE + ++ FS+E + EA+C G + + V+ + ++ ++ + DP+ +E
Sbjct: 91 IVNENL---VERFSQEVQVPEARCFYGFQILIENVHSEXYSLL-----IDTYIRDPKKRE 142
Query: 756 WL 757
+L
Sbjct: 143 FL 144
>pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B
pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B
Length = 326
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 696 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKE 755
IVNE + ++ FS+E + EA+C G + + V+ + ++ ++ + DP+ +E
Sbjct: 106 IVNENL---VERFSQEVQVPEARCFYGFQILIENVHSEMYSLL-----IDTYIRDPKKRE 157
Query: 756 WL 757
+L
Sbjct: 158 FL 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,303,034
Number of Sequences: 62578
Number of extensions: 1150573
Number of successful extensions: 2795
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2739
Number of HSP's gapped (non-prelim): 29
length of query: 844
length of database: 14,973,337
effective HSP length: 107
effective length of query: 737
effective length of database: 8,277,491
effective search space: 6100510867
effective search space used: 6100510867
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)