Query 003144
Match_columns 844
No_of_seqs 371 out of 2288
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 17:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0188 Alanyl-tRNA synthetase 100.0 2E-235 5E-240 1953.9 55.2 716 58-810 2-722 (895)
2 PLN02900 alanyl-tRNA synthetas 100.0 2E-228 5E-233 2034.6 75.6 754 48-821 1-759 (936)
3 COG0013 AlaS Alanyl-tRNA synth 100.0 8E-226 2E-230 1960.1 68.0 725 57-833 5-737 (879)
4 TIGR00344 alaS alanine--tRNA l 100.0 6E-217 1E-221 1931.6 70.2 725 62-833 1-731 (851)
5 PRK00252 alaS alanyl-tRNA synt 100.0 8E-213 2E-217 1903.2 69.7 718 58-834 2-725 (865)
6 PRK01584 alanyl-tRNA synthetas 100.0 8E-192 2E-196 1638.8 54.1 584 58-797 1-592 (594)
7 TIGR03683 A-tRNA_syn_arch alan 100.0 2E-190 5E-195 1705.0 65.3 667 55-834 53-771 (902)
8 PRK13902 alaS alanyl-tRNA synt 100.0 3E-189 7E-194 1694.4 65.0 667 55-834 56-767 (900)
9 PF01411 tRNA-synt_2c: tRNA sy 100.0 6E-176 1E-180 1519.6 15.8 545 62-637 1-552 (552)
10 cd00673 AlaRS_core Alanyl-tRNA 100.0 9E-109 2E-113 844.4 18.8 230 60-306 1-232 (232)
11 COG2872 Predicted metal-depend 100.0 2.8E-43 6.2E-48 367.3 23.3 226 541-802 11-239 (241)
12 PLN02961 alanine-tRNA ligase 100.0 4.6E-43 1E-47 366.6 24.5 209 567-796 2-222 (223)
13 KOG2105 Predicted metal-depend 100.0 2.1E-29 4.5E-34 261.2 17.4 254 545-832 24-280 (415)
14 PLN02837 threonine-tRNA ligase 99.9 3.5E-25 7.6E-30 262.4 20.4 189 626-836 29-232 (614)
15 PRK12305 thrS threonyl-tRNA sy 99.9 9E-24 1.9E-28 249.6 19.2 176 639-836 5-191 (575)
16 PRK12444 threonyl-tRNA synthet 99.9 4.4E-23 9.6E-28 246.4 20.9 176 639-836 71-260 (639)
17 PRK00413 thrS threonyl-tRNA sy 99.9 9.9E-23 2.1E-27 243.5 19.3 193 622-836 50-256 (638)
18 PLN02908 threonyl-tRNA synthet 99.9 2.6E-21 5.6E-26 232.3 19.9 175 639-836 118-307 (686)
19 TIGR00418 thrS threonyl-tRNA s 99.9 4.5E-21 9.8E-26 226.2 16.5 171 644-836 1-185 (563)
20 COG0441 ThrS Threonyl-tRNA syn 99.8 3.5E-19 7.5E-24 207.2 11.4 175 638-836 24-205 (589)
21 PF07973 tRNA_SAD: Threonyl an 99.3 4.7E-12 1E-16 99.6 5.7 44 735-794 1-44 (44)
22 smart00863 tRNA_SAD Threonyl a 98.9 7.9E-10 1.7E-14 86.7 4.2 44 735-794 1-44 (44)
23 PRK14799 thrS threonyl-tRNA sy 98.9 1.3E-09 2.9E-14 127.9 8.0 76 757-836 73-153 (545)
24 KOG1637 Threonyl-tRNA syntheta 98.5 4E-08 8.6E-13 109.7 2.7 112 641-836 67-178 (560)
25 cd00768 class_II_aaRS-like_cor 96.0 0.021 4.6E-07 58.2 7.8 181 61-299 3-211 (211)
26 PRK09348 glyQ glycyl-tRNA synt 94.6 0.51 1.1E-05 50.4 12.6 177 56-312 2-180 (283)
27 TIGR00388 glyQ glycyl-tRNA syn 92.6 1.5 3.3E-05 47.2 12.0 175 58-312 1-177 (293)
28 PRK14908 glycyl-tRNA synthetas 92.0 1.3 2.7E-05 56.2 12.4 175 58-312 5-181 (1000)
29 cd00733 GlyRS_alpha_core Class 91.3 2.6 5.6E-05 45.2 12.0 173 60-312 2-176 (279)
30 COG0752 GlyQ Glycyl-tRNA synth 90.3 2.1 4.5E-05 45.7 10.1 172 55-312 2-181 (298)
31 cd00669 Asp_Lys_Asn_RS_core As 90.2 0.52 1.1E-05 51.4 6.0 103 61-177 5-117 (269)
32 PF02091 tRNA-synt_2e: Glycyl- 84.8 2.9 6.4E-05 45.1 7.5 171 62-312 3-175 (284)
33 cd00670 Gly_His_Pro_Ser_Thr_tR 83.5 5.5 0.00012 41.7 9.0 108 61-182 6-149 (235)
34 PF01411 tRNA-synt_2c: tRNA sy 82.3 0.28 6.1E-06 58.8 -1.4 146 149-322 31-202 (552)
35 PRK00488 pheS phenylalanyl-tRN 79.4 2.3 5E-05 47.9 4.6 29 58-86 108-136 (339)
36 PRK03932 asnC asparaginyl-tRNA 79.4 19 0.00041 42.3 12.3 105 61-175 137-254 (450)
37 TIGR00458 aspS_arch aspartyl-t 76.6 18 0.00038 42.3 10.9 99 62-176 138-247 (428)
38 PTZ00450 macrophage migration 71.5 4 8.6E-05 38.9 3.3 24 169-192 79-102 (113)
39 KOG1759 Macrophage migration i 65.4 6 0.00013 37.7 3.1 23 170-192 79-101 (115)
40 TIGR00499 lysS_bact lysyl-tRNA 65.1 7 0.00015 46.4 4.4 99 62-175 177-293 (496)
41 PF01422 zf-NF-X1: NF-X1 type 62.2 3.4 7.3E-05 27.5 0.5 9 233-241 12-20 (20)
42 KOG1501 Arginine N-methyltrans 62.0 5.7 0.00012 45.9 2.7 81 289-371 72-159 (636)
43 PTZ00397 macrophage migration 57.4 9.9 0.00021 35.9 3.1 29 164-192 74-102 (116)
44 PTZ00326 phenylalanyl-tRNA syn 52.1 27 0.00058 41.5 6.1 123 120-308 358-483 (494)
45 COG0016 PheS Phenylalanyl-tRNA 49.7 17 0.00037 41.0 3.9 177 58-308 111-321 (335)
46 PF01187 MIF: Macrophage migra 44.3 17 0.00036 34.4 2.4 23 170-192 78-100 (114)
47 smart00438 ZnF_NFX Repressor o 42.9 11 0.00023 26.8 0.6 11 233-243 12-22 (26)
48 PF01409 tRNA-synt_2d: tRNA sy 42.8 12 0.00027 40.4 1.4 28 58-85 17-44 (247)
49 cd00776 AsxRS_core Asx tRNA sy 37.6 37 0.00081 38.0 4.2 101 60-176 27-138 (322)
50 PLN02853 Probable phenylalanyl 37.2 30 0.00065 41.0 3.4 28 56-83 219-246 (492)
51 PTZ00401 aspartyl-tRNA synthet 32.2 57 0.0012 39.5 4.8 99 62-176 218-328 (550)
52 cd00777 AspRS_core Asp tRNA sy 31.5 25 0.00055 38.7 1.6 105 61-177 5-117 (280)
53 COG2024 Phenylalanyl-tRNA synt 31.4 71 0.0015 36.6 5.0 58 237-307 279-343 (536)
54 KOG2783 Phenylalanyl-tRNA synt 29.4 28 0.00062 39.7 1.5 28 288-318 295-322 (436)
55 COG1854 LuxS LuxS protein invo 29.0 3.1E+02 0.0066 27.8 8.4 61 641-702 50-112 (161)
56 PRK09537 pylS pyrolysyl-tRNA s 27.7 2E+02 0.0042 33.8 7.9 198 29-307 179-398 (417)
57 cd00776 AsxRS_core Asx tRNA sy 27.7 32 0.00069 38.6 1.6 28 288-315 290-317 (322)
58 TIGR00462 genX lysyl-tRNA synt 27.3 33 0.00071 38.2 1.6 115 61-191 5-136 (304)
59 PRK12444 threonyl-tRNA synthet 25.1 2.7E+02 0.0059 34.2 9.1 164 61-249 278-477 (639)
60 PF01343 Peptidase_S49: Peptid 24.9 1E+02 0.0022 30.6 4.4 67 419-485 84-153 (154)
61 PF00152 tRNA-synt_2: tRNA syn 24.7 40 0.00088 37.7 1.7 107 60-176 25-141 (335)
62 PLN02850 aspartate-tRNA ligase 23.2 96 0.0021 37.4 4.5 102 62-176 230-340 (530)
63 PLN02850 aspartate-tRNA ligase 23.0 41 0.00089 40.5 1.4 29 288-316 494-522 (530)
64 TIGR00457 asnS asparaginyl-tRN 22.4 44 0.00095 39.4 1.5 29 288-316 417-445 (453)
65 cd00775 LysRS_core Lys_tRNA sy 21.9 45 0.00098 37.5 1.4 100 61-177 12-124 (329)
66 PRK06462 asparagine synthetase 21.8 47 0.001 37.5 1.5 108 60-176 33-152 (335)
67 COG1190 LysU Lysyl-tRNA synthe 21.5 34 0.00074 40.4 0.3 142 62-214 185-356 (502)
68 PTZ00401 aspartyl-tRNA synthet 21.3 48 0.001 40.1 1.5 29 288-316 514-542 (550)
69 PTZ00425 asparagine-tRNA ligas 21.2 48 0.001 40.3 1.5 29 288-316 550-578 (586)
70 PF09862 DUF2089: Protein of u 21.1 1.4E+02 0.0031 28.6 4.3 57 402-465 52-111 (113)
71 PF01361 Tautomerase: Tautomer 21.0 67 0.0015 26.4 1.9 29 164-192 16-44 (60)
72 COG0017 AsnS Aspartyl/asparagi 20.9 58 0.0013 38.1 2.0 83 61-154 138-226 (435)
73 TIGR00758 UDG_fam4 uracil-DNA 20.8 1.5E+02 0.0033 30.0 4.9 64 160-224 39-110 (173)
74 PLN02532 asparagine-tRNA synth 20.6 50 0.0011 40.5 1.5 29 288-316 597-625 (633)
75 PRK12295 hisZ ATP phosphoribos 20.5 1.8E+02 0.004 33.3 5.9 120 54-183 1-137 (373)
76 PLN02603 asparaginyl-tRNA synt 20.5 51 0.0011 40.0 1.5 29 288-316 529-557 (565)
77 PRK14063 exodeoxyribonuclease 20.5 1.2E+02 0.0025 27.0 3.4 32 437-468 6-37 (76)
78 cd00773 HisRS-like_core Class 20.5 1.6E+02 0.0034 31.7 5.1 116 60-183 5-139 (261)
79 PLN02221 asparaginyl-tRNA synt 20.2 51 0.0011 40.0 1.4 47 119-175 326-373 (572)
80 KOG0478 DNA replication licens 20.1 1.5E+02 0.0032 36.7 5.1 59 348-417 619-677 (804)
81 cd06008 NF-X1-zinc-finger Pres 20.0 42 0.00091 27.1 0.5 11 233-243 22-32 (49)
No 1
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-235 Score=1953.95 Aligned_cols=716 Identities=61% Similarity=1.016 Sum_probs=679.7
Q ss_pred CChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCC
Q 003144 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (844)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~flG~~~p~~p~~~~~r~~~~QkCiR~gGkhnD 137 (844)
||++|||++||+||++|.|++|+||||||.+||||||+|||||||||+|||+ +++++|++|+|||||+||||||
T Consensus 2 ~ta~evR~tFldfF~~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt------~a~lkRa~NsQKCIRAGGKHND 75 (895)
T KOG0188|consen 2 LTASEVRKTFLDFFKSKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT------MAKLKRAANSQKCIRAGGKHND 75 (895)
T ss_pred ccHHHHHHHHHHHHHhcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc------hhhhHhhhhhhhHHhccCCcCC
Confidence 8999999999999999999999999999999999999999999999999999 3458999999999999999999
Q ss_pred CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc-CCCC
Q 003144 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPAS 216 (844)
Q Consensus 138 ld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~-~~~~ 216 (844)
||+||+|.|||||||||||||||||||+|||.|||||||++||||++|||||||+||+++||++|.||++||+++ +|++
T Consensus 76 LdDVGkD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~vygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~~Gvp~s 155 (895)
T KOG0188|consen 76 LDDVGKDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFVYGIPTDRLYVTYFGGDEKLGLEPDLECREIWNELGVPDS 155 (895)
T ss_pred hhHhchhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHhhcCCCceEEEEEecCccccCCCCCcHHHHHHHHcCCChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCchH
Q 003144 217 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGF 296 (844)
Q Consensus 217 ~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTGmGl 296 (844)
||+||+++|||||||++|||||||||||||+|+++++.+||.|+|+++||||||||||||++||+|.|||+|||||||||
T Consensus 156 rILp~~~kDNFWEMGdtGPCGPCtEIHyDriG~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGf 235 (895)
T KOG0188|consen 156 RILPFGMKDNFWEMGDTGPCGPCTEIHYDRIGGRDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGF 235 (895)
T ss_pred hccCCccccchhhhcCCCCCCcchhhhhhhhcCcchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcccccchhhhhhhhhhheeeeecCCCccCCCCcchHH
Q 003144 297 ERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVL 376 (844)
Q Consensus 297 ERl~~vlqg~~snydtd~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~a~rviaDH~R~~~~~i~DG~~Psn~grgYvl 376 (844)
|||++|||+|.||||||+|+||+++|++.++++ |+| ++.+.+|+||||+|||+||+++|||||.+|+|+||||||
T Consensus 236 ERLvsVlQnk~SNYDTDlFtPif~aiq~~~~~~-YtG----~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvL 310 (895)
T KOG0188|consen 236 ERLVSVLQNKTSNYDTDLFTPIFEAIQEGTGAR-YTG----EDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVL 310 (895)
T ss_pred HHHHHHHhcccccccchhhHHHHHHHHHhcCCC-ccC----CccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHH
Confidence 999999999999999999999999999999997 998 456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCccchhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C
Q 003144 377 RRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQG-K 455 (844)
Q Consensus 377 RrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~-~ 455 (844)
|||||||+||++++||++++||.+|||+|++.||++||||+++.+.|.++|++||+.|++||++|.++|++.++.+++ +
T Consensus 311 RRILRRavrya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~~~~~s~ 390 (895)
T KOG0188|consen 311 RRILRRAVRYAHEKLNAPPGFFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTLDRGRKLFDRVARELGSSK 390 (895)
T ss_pred HHHHHHHHHHHHHHhCCCcchhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998874 7
Q ss_pred CCChHHhHHhhcccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCcccccHHHHHHHhhcCCCCccc
Q 003144 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (844)
Q Consensus 456 ~l~g~~af~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d 535 (844)
.|||++||.||||||||+|||++||+|+|++||.++|+++.++.+++|+.+.+.... +.+++ +++| +|+|+|
T Consensus 391 tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~~~~~--i~ldv--l~el----~p~TdD 462 (895)
T KOG0188|consen 391 TIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGGGKLS--IDLDV--LSEL----VPPTDD 462 (895)
T ss_pred cCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCCCCCc--ccHHH--HHhh----CCCCCC
Confidence 999999999999999999999999999999999999999999999999876443222 44443 4443 799999
Q ss_pred cCCcccccccceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEeccCCeeecceeEEeccc---eEEEEeEEEECCEEEE
Q 003144 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG---SFYVRNVQIYGGFVIH 612 (844)
Q Consensus 536 ~~~Y~y~~~~~akVl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~---~~~V~~v~k~~g~i~H 612 (844)
++||+-...++++|++++.++.+++++..|+.++|+||+|+||+|+|||.+|+|.|...+. .|.|..++. ||+|+|
T Consensus 463 s~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh 541 (895)
T KOG0188|consen 463 SFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVH 541 (895)
T ss_pred ccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhccc-CCEEEE
Confidence 9999524678999999999999999999999999999999999999999999999976443 355555555 899999
Q ss_pred EEEeecCCccCCCCCEEEEEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHH
Q 003144 613 IGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRR 692 (844)
Q Consensus 613 ~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~ 692 (844)
.+.+. +.+++|++|.+.+|.+||+.+|++|||||||++|||+++ ..+.|+||++.||++||||+...++|.|++++
T Consensus 542 ~g~l~---~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~ 617 (895)
T KOG0188|consen 542 IGVLE---GDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQLKK 617 (895)
T ss_pred Eeeec---cccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc-ccccccccccChhHeeeecccCCCCCHHHHHH
Confidence 99863 799999999999999999999999999999999999999 55689999999999999999988899999999
Q ss_pred HHHHHHHHHHcCCCeEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCcccccc
Q 003144 693 IESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNT 772 (844)
Q Consensus 693 IE~~mNeiI~~nlpV~~~~~~~eEA~~~~g~r~~fge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nT 772 (844)
+|+.||++|.++.+|..+++++++|+++.|+|++|+|.||++||||++|.. ...++|+|||||+.||
T Consensus 618 vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YPdpVRVVsvg~~-------------~~~svE~CgGTH~~~t 684 (895)
T KOG0188|consen 618 VEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYPDPVRVVSVGAG-------------QLTSVEFCGGTHLTNT 684 (895)
T ss_pred HHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccCCceEEEEeccc-------------cccceeecCCcccccc
Confidence 999999999999999999999999999999999999999999999999832 3579999999999999
Q ss_pred cccccEEEEeeeccCCCeEEEEEEeChHHHHHHHHHHH
Q 003144 773 REAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACS 810 (844)
Q Consensus 773 geIg~fkI~~~s~~~kgv~RI~~vtG~~A~~~~~~~~~ 810 (844)
|+||.|.|++++++++|+|||.++||++|.++.+..++
T Consensus 685 ~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a~~ 722 (895)
T KOG0188|consen 685 SHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLAED 722 (895)
T ss_pred cccceEEEechhhhhhceeEEEEeccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888875
No 2
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=2.5e-228 Score=2034.60 Aligned_cols=754 Identities=73% Similarity=1.174 Sum_probs=700.4
Q ss_pred ccCCCCCCCCCChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccccccccCCCCccccccccccccc
Q 003144 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQK 127 (844)
Q Consensus 48 ~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~flG~~~p~~p~~~~~r~~~~Qk 127 (844)
||+.|.-.++|+++|||++||+||++|||++||||||||+|||||||||||||||||||+|+++|++++++++|+|+|||
T Consensus 1 ~~~~~~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~Qk 80 (936)
T PLN02900 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQK 80 (936)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecc
Confidence 67777777889999999999999999999999999999999999999999999999999999999777778999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHH
Q 003144 128 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (844)
Q Consensus 128 CiR~gGkhnDld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~ 207 (844)
|||+|||||||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||+||+.+ |||+||++
T Consensus 81 CiR~gGKHnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~~~--~~d~Ea~~ 158 (936)
T PLN02900 81 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQ--APDDEARA 158 (936)
T ss_pred cccCCCCCCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCCCc--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999974 99999999
Q ss_pred HHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCC
Q 003144 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287 (844)
Q Consensus 208 iW~~~~~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~ 287 (844)
||+++||++||+++|.+||||+||++||||||||||||||+++++..++|.||+|||||||||||||||+.||+|+|||+
T Consensus 159 iW~~~~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~ 238 (936)
T PLN02900 159 IWLDYLPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238 (936)
T ss_pred HHHHhCCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCCCCCCEEEEeeeeeeeeeecCCCceeeCCC
Confidence 99999999999999999999999999999999999999998877666688889999999999999999999999999999
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcccccchhhhhhhhhhheeeeecCCCcc
Q 003144 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCP 367 (844)
Q Consensus 288 k~iDTGmGlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~a~rviaDH~R~~~~~i~DG~~P 367 (844)
||||||||||||+|||||++||||||+|.|||++|++++|+++|+|....++.+..++||||||||+||++|||+||++|
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~~~~~~~~a~rviaDH~R~~~f~i~DGv~P 318 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVP 318 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccccccccceeeeeehhhHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999998889986543333456789999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHHHhhhCCCccchhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003144 368 GNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447 (844)
Q Consensus 368 sn~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~ 447 (844)
||+|||||||||||||+|+++.+||++.|||++||++|++.|++.||||.++++.|++||..||++|.+||++|+++|++
T Consensus 319 sN~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~ 398 (936)
T PLN02900 319 SNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKK 398 (936)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999655899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc---CCCCChHHhHHhhcccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCcccccHHHHHH
Q 003144 448 AAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524 (844)
Q Consensus 448 ~~~~~~---~~~l~g~~af~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~ 524 (844)
++++.+ .+.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++........++...+..
T Consensus 399 ~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 478 (936)
T PLN02900 399 ALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478 (936)
T ss_pred HHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHH
Confidence 998765 36899999999999999999999999999999999999999999999999876432211111223233344
Q ss_pred HhhcCCCCccccCCcccccccceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEeccCCeeecceeEEeccc-eEEEEeE
Q 003144 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG-SFYVRNV 603 (844)
Q Consensus 525 l~~~~~~~T~d~~~Y~y~~~~~akVl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~-~~~V~~v 603 (844)
+.+..++++.+|.||++..+++|+|++++.+++.++++.+++.+.|+||+|+|||||||||+|+|+|..+++ .+.|.+|
T Consensus 479 ~~~~~~~~~t~f~gY~~~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~~V~dv 558 (936)
T PLN02900 479 LQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVSDV 558 (936)
T ss_pred HHhccCCCCCcccccccCCccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCCCEEEEEEE
Confidence 543323444469999944338999999998888899998888899999999999999999999999987666 7999999
Q ss_pred EEECCEEEEEEEeecCCccCCCCCEEEEEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCC
Q 003144 604 QIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGK 683 (844)
Q Consensus 604 ~k~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~ 683 (844)
++.+|.++|.+.+.. +.+.+|++|.+.|||+||+.+|++|||+|||++||+++||.++.|.|+++.++++||||++++
T Consensus 559 ~k~~g~i~H~~~~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~ 636 (936)
T PLN02900 559 QKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGK 636 (936)
T ss_pred EEECCEEEEEEEecc--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCC
Confidence 999999999987654 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEECCcccccccCCCCccccCc-eEe
Q 003144 684 PVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSI-SAE 762 (844)
Q Consensus 684 ~lt~E~L~~IE~~mNeiI~~nlpV~~~~~~~eEA~~~~g~r~~fge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~-~~e 762 (844)
++|++++.+||+.||++|.+|+||++.+++++||++..|++++|+++|++.||||+|+ ++ +.+
T Consensus 637 ~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig----------------~~~d~e 700 (936)
T PLN02900 637 PMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVG----------------GVYSME 700 (936)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCCCCcEEEEEEC----------------Ccccee
Confidence 9999999999999999999999999999999999997899999999999999999998 66 899
Q ss_pred eccCcccccccccccEEEEeeeccCCCeEEEEEEeChHHHHHHHHHHHHHHHHHHhhcc
Q 003144 763 LCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKI 821 (844)
Q Consensus 763 lCgGTHV~nTgeIg~fkI~~~s~~~kgv~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~ 821 (844)
+||||||+|||+||.|+|++++++++|++||+++||.+|+++.+...++++++++++++
T Consensus 701 lCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l~~l~~~l~~ 759 (936)
T PLN02900 701 LCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKV 759 (936)
T ss_pred CCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999987
No 3
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-226 Score=1960.08 Aligned_cols=725 Identities=48% Similarity=0.827 Sum_probs=670.6
Q ss_pred CCChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCC
Q 003144 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (844)
Q Consensus 57 ~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~flG~~~p~~p~~~~~r~~~~QkCiR~gGkhn 136 (844)
.||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++|++ .|+|+||||||+ |
T Consensus 5 ~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~-----~r~~~sQkcIR~----N 75 (879)
T COG0013 5 KLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPA-----NRAVTSQKCIRT----N 75 (879)
T ss_pred cCCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCC-----CCeecccccccc----C
Confidence 3999999999999999999999999999999999999999999999999999977764 499999999999 9
Q ss_pred CCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc--CC
Q 003144 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 214 (844)
Q Consensus 137 Dld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~--~~ 214 (844)
||||||+|+|||||||||||||||||||+|||.|||||||++|||||||||||||+ .|+||+++|++. +|
T Consensus 76 DieNVG~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~--------~Ddea~~~W~~~~gip 147 (879)
T COG0013 76 DIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYE--------DDDEAYNEWEKIIGIP 147 (879)
T ss_pred chhhcCccccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEec--------CchHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999997 599999999998 99
Q ss_pred CCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCC--CCCCCCCCCCceEEEeeeeccccccC-CCCccccCCCCccc
Q 003144 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRD--AASLVNNDDPTCIEIWNIVFIQFNRE-SDGSLKPLPAKHVD 291 (844)
Q Consensus 215 ~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~--~~~~~~~~~~r~lEiwNlVFmq~~r~-~~g~l~~Lp~k~iD 291 (844)
++||+++|.+||||+||+ ||||||||||||||+..+ ....++.|++|||||||||||||||+ .+|+|.|||+||||
T Consensus 148 ~~rIir~~~~dNfW~~G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~ID 226 (879)
T COG0013 148 PERIIRIGASDNFWEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNID 226 (879)
T ss_pred HHHeeecCcCCCCCCCCC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCcc
Confidence 999999999999999999 999999999999986433 33577899999999999999999999 79999999999999
Q ss_pred cCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcccccchhhhhhhhhhheeeeecCCCccCCCC
Q 003144 292 TGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEG 371 (844)
Q Consensus 292 TGmGlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~a~rviaDH~R~~~~~i~DG~~Psn~g 371 (844)
||||||||+|||||+|||||||+|.|||+.+++++|.. |. .+.+.+++++||||||+||++|||+|||+|||+|
T Consensus 227 TGmGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~~-~~-----~~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNeg 300 (879)
T COG0013 227 TGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGKK-YG-----EDEEDPDVSFRVIADHIRSLAFMIADGVLPSNEG 300 (879)
T ss_pred cCccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCCc-CC-----ccccccceeEEEehhHHHHHHHHHhCCCCcCCCC
Confidence 99999999999999999999999999999999999864 42 1223347899999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhCCCccchhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003144 372 REYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQD 451 (844)
Q Consensus 372 rgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~ 451 (844)
||||||||||||+||+ ++||++.|||++|||++++.|+++||||+++++.|+++|+.||++|.+||++|+++|++++++
T Consensus 301 rGYvlRriiRRa~R~~-~~LG~~~~fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~~ 379 (879)
T COG0013 301 RGYVLRRIIRRALRHG-KLLGIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELAK 379 (879)
T ss_pred ccHHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 579999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcC-CCCChHHhHHhhcccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCcccccHHHHHHHhhcCC
Q 003144 452 VQG-KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGV 530 (844)
Q Consensus 452 ~~~-~~l~g~~af~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (844)
+++ ++|||++||+||||||||+|||++||+|+|++||+++|+.+|++||++||+.+ .+... ........+.. ..
T Consensus 380 ~~~~~~l~ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~~-~~~~~---~~~~~~~~~~~-~~ 454 (879)
T COG0013 380 LKKSKTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASA-GSGEG---AKESEDLELID-KL 454 (879)
T ss_pred hccCCccChHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhcc-ccccc---cchhhhhhhhc-cC
Confidence 874 78999999999999999999999999999999999999999999999999754 21110 11111112221 23
Q ss_pred CCccccCCcccccccceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEeccCCeeecceeEEec-cceEEEEeEEEEC-C
Q 003144 531 LATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGL-FGSFYVRNVQIYG-G 608 (844)
Q Consensus 531 ~~T~d~~~Y~y~~~~~akVl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~-~~~~~V~~v~k~~-g 608 (844)
++|+ |.+|+ ..+.+++|++|+.++..|+++.+|+..+||||+||||||||||++|+|+|..+ +..+.|.||||.+ |
T Consensus 455 ~~te-f~gY~-~~~~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~~~~V~dvqK~~~~ 532 (879)
T COG0013 455 PETE-FLGYD-DLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGNG 532 (879)
T ss_pred CCce-eeecc-cccceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecCCcEEEEEEEEEcCCc
Confidence 5564 99999 77888999999987766888999999999999999999999999999999887 4789999999997 8
Q ss_pred EEEEEEEeecCCccCCCCCEEEEEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHH
Q 003144 609 FVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPE 688 (844)
Q Consensus 609 ~i~H~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E 688 (844)
.++|.+.+.. +.+++|+.|.+.|||+||.++|+||||||||++|||+++|.|++|+||.+.++++||||+|.+++|.|
T Consensus 533 ~~vH~~~~~~--G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~E 610 (879)
T COG0013 533 VIVHKGKVES--GELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAE 610 (879)
T ss_pred eEEEEEeecc--CccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCHH
Confidence 9999998766 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCcc
Q 003144 689 HLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTH 768 (844)
Q Consensus 689 ~L~~IE~~mNeiI~~nlpV~~~~~~~eEA~~~~g~r~~fge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTH 768 (844)
+|++||+.+|++|++|+||++.+|++++|++. |++++|||+|++.||||+|+ ++|+|+|||||
T Consensus 611 el~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~-Ga~alfGekY~~~VRVV~ig----------------~~SvElCGGTH 673 (879)
T COG0013 611 ELKEIERLVNEIIRENLPVKTEEMDLDEAKAK-GAMALFGEKYGDEVRVVEIG----------------DFSVELCGGTH 673 (879)
T ss_pred HHHHHHHHHHHHHHcCCceeEEEccHHHHHHh-ChHhhcCCcCCCeEEEEEEC----------------CceeeccCCcc
Confidence 99999999999999999999999999999998 99999999999999999999 68999999999
Q ss_pred cccccccccEEEEeeeccCCCeEEEEEEeChHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhcc
Q 003144 769 LSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCSSG 833 (844)
Q Consensus 769 V~nTgeIg~fkI~~~s~~~kgv~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~f 833 (844)
|.|||+||.|+|++++++++|++||+|+||..|+++.+...+++++++.+++.+...+. .++.|
T Consensus 674 v~~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a~~lk~~~~~~~-kv~~l 737 (879)
T COG0013 674 VSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASLLKVPPELLP-KVERL 737 (879)
T ss_pred cCCccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHHHHHHHHHHHHhCCChhHHH-HHHHH
Confidence 99999999999999999999999999999999999999999999999999888433332 44443
No 4
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=6.4e-217 Score=1931.56 Aligned_cols=725 Identities=45% Similarity=0.773 Sum_probs=668.5
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCCCCCC
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDV 141 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~flG~~~p~~p~~~~~r~~~~QkCiR~gGkhnDld~V 141 (844)
|||++||+||++|||++||||||||+|||||||||||||||||||+|+++|+ ++|+||||||||+ ||||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----nDld~V 71 (851)
T TIGR00344 1 EIRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPP-----SNRLVNAQPCIRL----NDIENV 71 (851)
T ss_pred CHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cchhhh
Confidence 6999999999999999999999999999999999999999999999999986 5899999999999 999999
Q ss_pred CCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc-CCCCCccc
Q 003144 142 GKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASRVLP 220 (844)
Q Consensus 142 G~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~-~~~~~I~~ 220 (844)
|+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++ |+||++||+++ ||++||++
T Consensus 72 G~t~rHhTfFEMlGnfSFgdYfK~eai~~awe~lT~~~~i~~~rl~vTv~~~--------D~ea~~iW~~~g~~~~~i~~ 143 (851)
T TIGR00344 72 GRTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLYVTVYED--------DEEAYEIWEKHGIPAERIIR 143 (851)
T ss_pred cCCCcchhhHHhhcccchhhhhHHHHHHHHHHHHhhhcCCChHHEEEEEcCC--------CHHHHHHHHhcCCCHHHccc
Confidence 9999999999999999999999999999999999999999999999999974 89999999999 99999999
Q ss_pred CCCCCCcccCCCCCCCcCceeEEeecCC---CCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCchHH
Q 003144 221 FGCKDNFWEMGDTGPCGPCSEIHYDRTG---NRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (844)
Q Consensus 221 ~~~~dNfW~mG~~GpcGPcsEI~yd~~~---~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTGmGlE 297 (844)
+|.+||||+||+ ||||||||||||+|+ ++.+.++||.||+|||||||||||||||++||+|+|||+||||||||||
T Consensus 144 ~~~~dNfW~~G~-GpcGPcsEi~yD~g~~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLE 222 (851)
T TIGR00344 144 CGDKDNFWDMGD-GPCGPCTEIYYDRGEFVGGKPGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLE 222 (851)
T ss_pred CCccCCcCCCCC-cCCccCeEEEEecCcccCCCCCcccccCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHH
Confidence 999999999999 999999999999974 3345567888999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcc--cccchhhhhhhhhhheeeeecCCCccCCCCcchH
Q 003144 298 RLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDAD--KVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (844)
Q Consensus 298 Rl~~vlqg~~snydtd~f~pli~~i~~~~~~~~y~g~~~~~~~~--~~~~a~rviaDH~R~~~~~i~DG~~Psn~grgYv 375 (844)
||+|||||++||||||+|.|||++|++++|+++|.+..+..+.+ +.++||||||||+||++|||+||++|||+|||||
T Consensus 223 Rl~~vlqg~~snydtD~f~~ii~~i~~~~g~~y~~~~~~~~d~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grgYv 302 (851)
T TIGR00344 223 RFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRGYV 302 (851)
T ss_pred HHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCCCcCccccccccccccchheeeehhhhhhhhhhhccCcccCCCCCchh
Confidence 99999999999999999999999999999986554443333333 2346999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccchhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 003144 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGK 455 (844)
Q Consensus 376 lRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~ 455 (844)
||||||||+|+++ +||++.+||++||++|++.|++.||||.++++.|++||..||++|.+||++|+++|++++++++++
T Consensus 303 lRrilRRa~r~~~-~lg~~~~fl~~lv~~~~~~m~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~l~~~~~~~~~~ 381 (851)
T TIGR00344 303 LRRLIRRALRHGK-KLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLGKK 381 (851)
T ss_pred HHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHHhhhChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999994 799999999999999999999999999999999999999999999999999999999999876557
Q ss_pred CCChHHhHHhhcccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCcccccHHHHHHHhhcCCCCccc
Q 003144 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (844)
Q Consensus 456 ~l~g~~af~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d 535 (844)
.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++... ...+ +..+.+ ..++| +
T Consensus 382 ~i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F~~~~~~~~~~sr~~~~~~~---~~~~---~~~~~~-~~~~t-~ 453 (851)
T TIGR00344 382 ELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQTIS---FELQ---EIALAN-VYPAT-E 453 (851)
T ss_pred ccCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhhhhhccc---cccc---HHHHhc-ccCCc-c
Confidence 89999999999999999999999999999999999999999999999987654321 1122 233322 12445 5
Q ss_pred cCCcccccccceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEeccCCeeecceeEEeccceEEEEeEEEECCEEEEEEE
Q 003144 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGS 615 (844)
Q Consensus 536 ~~~Y~y~~~~~akVl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~~v~k~~g~i~H~~~ 615 (844)
+.+|+ ..+++|+|++++.+++.++++..++.++|+||+|+|||||||||+|+|+|..++..++|.+|++.+|.++|.+.
T Consensus 454 ~l~Y~-~~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~ 532 (851)
T TIGR00344 454 FLGYE-DLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIANDGKFRVVDVQKPNGVVFHFGE 532 (851)
T ss_pred cccee-cccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecCCcEEEEEEEEEECCEEEEEEE
Confidence 88999 57899999999988888888888888999999999999999999999999876678999999999999999987
Q ss_pred eecCCccCCCCCEEEEEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHH
Q 003144 616 LTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIES 695 (844)
Q Consensus 616 ~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~ 695 (844)
+.. +.+++|++|.+.|||+||+.+|++|||+|||++||+++||.+++|.|+++.++++||||++++++|++++++||+
T Consensus 533 ~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~ 610 (851)
T TIGR00344 533 VEG--GSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIED 610 (851)
T ss_pred ecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHH
Confidence 654 678999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHcCCCeEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCccccccccc
Q 003144 696 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA 775 (844)
Q Consensus 696 ~mNeiI~~nlpV~~~~~~~eEA~~~~g~r~~fge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeI 775 (844)
+||++|++|+||++.+++++||++. +.+++|+++|++.||||+|+ +++.++||||||+|||+|
T Consensus 611 ~vNelI~~n~pV~~~~~~~eeA~~~-~~~~~~~e~y~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeI 673 (851)
T TIGR00344 611 LVNEQILANIPIKVIFMDLDEAKAK-GAFALFGEKYGEKVRVVSVG----------------DVSVELCGGTHVRNTGEI 673 (851)
T ss_pred HHHHHHHhCCceEEEEeCHHHHHhc-chhhhcCCCCCCeEEEEEEC----------------CeeccCCCCCccCChhhC
Confidence 9999999999999999999999997 45566888899999999998 679999999999999999
Q ss_pred ccEEEEeeeccCCCeEEEEEEeChHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhcc
Q 003144 776 EAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCSSG 833 (844)
Q Consensus 776 g~fkI~~~s~~~kgv~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~f 833 (844)
|.|+|++.+++++|++||+++||.+|+++.+...+.++++++.++++..++.+.++.+
T Consensus 674 g~~kI~~~~~~~~G~~RIe~v~G~~A~~~~~~~~~~l~~l~~~L~~~~~~i~~~v~~l 731 (851)
T TIGR00344 674 GLFKIVKESGIAAGVRRIEAVTGNAAIEYLNEQEDKLKELADILKVTPNELPKKIERF 731 (851)
T ss_pred eEEEEEEEeEecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998766666655544
No 5
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.4e-213 Score=1903.21 Aligned_cols=718 Identities=50% Similarity=0.848 Sum_probs=668.0
Q ss_pred CChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCC
Q 003144 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (844)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~flG~~~p~~p~~~~~r~~~~QkCiR~gGkhnD 137 (844)
||++|||++||+||++|||++||||||||+|||||||||||||||||||+|+++|+ ++|+||||||||+ ||
T Consensus 2 ~~~~eiR~~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~f~g~~~p~-----~~r~~~~QkCiR~----nD 72 (865)
T PRK00252 2 MTSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPP-----YPRATTSQKCIRT----ND 72 (865)
T ss_pred CCHHHHHHHHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cc
Confidence 89999999999999999999999999999999999999999999999999999886 5899999999999 99
Q ss_pred CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc--CCC
Q 003144 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPA 215 (844)
Q Consensus 138 ld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~--~~~ 215 (844)
|||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++ |+||++||++. ||+
T Consensus 73 ld~VG~t~rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~~~~i~~~~l~vt~~~~--------D~e~~~iW~~~~g~~~ 144 (865)
T PRK00252 73 LENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLYVTVYED--------DDEAYDIWKKEIGVPP 144 (865)
T ss_pred hhhccCCCCchHHHHHhcccchhhhhHHHHHHHHHHHHHHHhCCCHHHEEEEEcCC--------CHHHHHHHHhccCCCH
Confidence 99999999999999999999999999999999999999999999999999999974 99999999976 999
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeEEeecCCCC--CCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccC
Q 003144 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNR--DAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTG 293 (844)
Q Consensus 216 ~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~--~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTG 293 (844)
+||++++.+||||+||++||||||||||||||... ++..++|.|+||||||||||||||||+++|+|.|||+||||||
T Consensus 145 ~~i~~~~~~dNfW~~G~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~~~~lEiwNlVF~q~~~~~~g~~~~Lp~~~iDTG 224 (865)
T PRK00252 145 ERIIRIGKKDNFWSMGDTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDTG 224 (865)
T ss_pred HHeecCCccCCccccCCCcCCCCCeEEEEecCcccCCCCCCCCcCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecC
Confidence 99999999999999999999999999999997532 3456788999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcccccchhhhhhhhhhheeeeecCCCccCCCCcc
Q 003144 294 LGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGRE 373 (844)
Q Consensus 294 mGlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~a~rviaDH~R~~~~~i~DG~~Psn~grg 373 (844)
||||||+|||||++||||||+|.|||++|++++|++ |. .++||||||||+||++|||+||++|||+|||
T Consensus 225 ~GlER~~~ilq~~~snydtd~f~~~i~~i~~~~~~~-y~----------~~~a~rviaDH~R~~~f~i~DG~~Psn~grg 293 (865)
T PRK00252 225 MGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGVK-YE----------DDVSFRVIADHIRAVAFLIADGVLPSNEGRG 293 (865)
T ss_pred cCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCC-CC----------CCceEEEEcchHHHHHHHHccCcccCCCCcc
Confidence 999999999999999999999999999999999974 63 2589999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhCCCccchhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003144 374 YVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ 453 (844)
Q Consensus 374 YvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~ 453 (844)
||||||||||+|++ +.||++.+||++|||+|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++.+
T Consensus 294 YvlRrilRRa~r~~-~~lg~~~~~l~~lv~~~~~~~~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~~ 372 (865)
T PRK00252 294 YVLRRILRRAVRHG-RLLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALAKLK 372 (865)
T ss_pred hHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999 67999999999999999999999999999999999999999999999999999999999998764
Q ss_pred C-CCCChHHhHHhhcccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCcccccHHHHHHHhhcCCCC
Q 003144 454 G-KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLA 532 (844)
Q Consensus 454 ~-~~l~g~~af~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 532 (844)
. +.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||+.++.... ...+..+.. .. +
T Consensus 373 ~~~~l~g~~~f~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~------~~~~~~~~~-~~-~ 444 (865)
T PRK00252 373 AGKVLSGEDAFKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGD------YNALEELLD-DL-A 444 (865)
T ss_pred CCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccc------hhHHHHHhh-cC-C
Confidence 3 5899999999999999999999999999999999999999999999999875432210 112233332 22 4
Q ss_pred ccccCCcccccccceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEeccCCeeecceeEEeccceEEEEeEEEE-CCEEE
Q 003144 533 TDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFVI 611 (844)
Q Consensus 533 T~d~~~Y~y~~~~~akVl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~~v~k~-~g~i~ 611 (844)
|+ |.+|+ ..+++|+|++|+.++++++++.+++.++|+||+|+|||||||||+|+|+|.. +..++|.+|++. +|.++
T Consensus 445 t~-f~~Y~-~~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~-~~~~~V~~v~~~~~g~i~ 521 (865)
T PRK00252 445 TE-FVGYD-TLEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED-GGVFEVTDTQKPPNGLIV 521 (865)
T ss_pred Ce-eeeee-eccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEee-CcEEEEEEEEEccCCEEE
Confidence 53 88998 6789999999998888898888888899999999999999999999999977 678999999998 99999
Q ss_pred EEEEeecCCccCCCCCEEEEEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHH
Q 003144 612 HIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLR 691 (844)
Q Consensus 612 H~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~ 691 (844)
|.+.... +.+++|++|.+.|||+||+.+|++|||+|||++|++++||.++.|.|+++.++++|+||++++++|++++.
T Consensus 522 H~~~~~~--~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~lt~eel~ 599 (865)
T PRK00252 522 HRGKVEE--GELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEELR 599 (865)
T ss_pred EEEEecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCCCCHHHHH
Confidence 9987544 67899999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCccccc
Q 003144 692 RIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSN 771 (844)
Q Consensus 692 ~IE~~mNeiI~~nlpV~~~~~~~eEA~~~~g~r~~fge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~n 771 (844)
+||++||++|++|+||+..+++++||++. +.+++|+++|++.||||+|+ +++.++||||||+|
T Consensus 600 ~IE~~vN~lI~~n~pV~~~~~~~~eA~~~-~~~~~~~~~y~~~VRVV~Ig----------------~~d~~~CgGTHV~n 662 (865)
T PRK00252 600 KIEDLVNEKIRENLPVETEEMSIEEAKKM-GAMALFGEKYGDEVRVVSIG----------------DFSIELCGGTHVSN 662 (865)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCHHHHHhC-CchhhccccCCCeEEEEEEC----------------CceeeCCCCCccCC
Confidence 99999999999999999999999999985 77788888899999999998 57999999999999
Q ss_pred ccccccEEEEeeeccCCCeEEEEEEeChHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhccc
Q 003144 772 TREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCSSGY 834 (844)
Q Consensus 772 TgeIg~fkI~~~s~~~kgv~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~f~ 834 (844)
||+||.|+|++.+++++|++||+++||.+|+++.+...+.++++++.++++..++.+.++.+.
T Consensus 663 TgeIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~~~~l~~~~~~l~~~~~~l~~~v~~l~ 725 (865)
T PRK00252 663 TGDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQEALLKELAALLKAKPSELPERVEALL 725 (865)
T ss_pred cccCeEEEEEEEeeecCCeEEEEEEECHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987666666655543
No 6
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8e-192 Score=1638.83 Aligned_cols=584 Identities=41% Similarity=0.729 Sum_probs=542.9
Q ss_pred CChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCC
Q 003144 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (844)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~flG~~~p~~p~~~~~r~~~~QkCiR~gGkhnD 137 (844)
||++|||++||+||++|||+++|||||||+|||||||||||||||||||+|.++|+ ++|+|+||||||+ ||
T Consensus 1 ~~~~eiR~~fl~FF~~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----~D 71 (594)
T PRK01584 1 MTLDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPS-----GTRLVDVQKCLRT----GD 71 (594)
T ss_pred CCHHHHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cc
Confidence 68999999999999999999999999999999999999999999999999999886 5799999999999 89
Q ss_pred CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccc--cCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc-CC
Q 003144 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV--YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LP 214 (844)
Q Consensus 138 ld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~--l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~-~~ 214 (844)
||||| |+|||||||||||||||||||+|||+|||||||++ |||||+|||||||+||+. |++|+||++||+++ ||
T Consensus 72 le~VG-~~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~~~~~~--~~~D~Ea~~iW~~~g~~ 148 (594)
T PRK01584 72 IDEVG-DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEE--IPRDEETASVWESLGIP 148 (594)
T ss_pred ccccC-CCcchhHHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEeCCCCC--CCCCHHHHHHHHHcCCC
Confidence 99999 89999999999999999999999999999999998 999999999999999885 89999999999999 99
Q ss_pred CCCcccCCCCCCcc-cCCCCCCCcCceeEEeecCCCCCC-CCCCCCCCCceEEEeeeeccccccCCCCccccCCCCcccc
Q 003144 215 ASRVLPFGCKDNFW-EMGDTGPCGPCSEIHYDRTGNRDA-ASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDT 292 (844)
Q Consensus 215 ~~~I~~~~~~dNfW-~mG~~GpcGPcsEI~yd~~~~~~~-~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDT 292 (844)
++||++++.+|||| +||++||||||||||||+|+.... .+.++++|+|||||||||||||||++||+|.|||+|||||
T Consensus 149 ~~rI~~~~~~dNfW~~~G~~GPCGPcsEI~~d~g~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~IDT 228 (594)
T PRK01584 149 KDRIFYLSREHNWWGPVGETGPCGPDTEIFVDTGKPKCSVNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVDT 228 (594)
T ss_pred HHHeeeCCCCCCcccccCCCcCCCCceEEEEecCCcccccccCCCCCCCceEEEeeeeeeeeeecCCCccccCCCCceeC
Confidence 99999999999999 799999999999999999754111 1234568899999999999999999999999999999999
Q ss_pred CchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcccccchhhhhhhhhhheeeeecC--CCccCCC
Q 003144 293 GLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIAD--GSCPGNE 370 (844)
Q Consensus 293 GmGlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~a~rviaDH~R~~~~~i~D--G~~Psn~ 370 (844)
|||||||+|||||++||||||+|.|||++|++++|++ |.. + +..++||||||||+||++|||+| |++|||+
T Consensus 229 GmGLERl~~vlqg~~s~ydtdlf~pii~~i~~~~~~~-y~~----~--~~~~~a~rvIaDH~R~~~f~i~D~~Gv~PsN~ 301 (594)
T PRK01584 229 GMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGKI-YGQ----N--EEDDRSIRIIADHIRAACFILGDPFVVLPSNV 301 (594)
T ss_pred CcCHHHHHHHHcCCCCccchhhhHHHHHHHHHHhCCC-cCC----C--CCCceeEEEEecHHHHHHHHhhcccCCCCCCC
Confidence 9999999999999999999999999999999999974 631 1 23478999999999999999999 9999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhCCCccchhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003144 371 GREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQ 450 (844)
Q Consensus 371 grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~ 450 (844)
|||||||||||||+|+| +.||++.+||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|+++++
T Consensus 302 grGYvlRrilRRa~r~~-~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i~ 380 (594)
T PRK01584 302 GQGYVLRRLIRRSIRHA-KKLGIESHFLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLIP 380 (594)
T ss_pred CCchHHHHHHHHHHHHH-HHhCCCchhHHHHHHHHHHHHhhhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 57999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhc-CCCCChHHhHHhhcccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCcccccHHHHHHHhhcC
Q 003144 451 DVQ-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRG 529 (844)
Q Consensus 451 ~~~-~~~l~g~~af~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (844)
+++ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++ + .
T Consensus 381 ~~~~~~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~~~~~--~-------------------~ 439 (594)
T PRK01584 381 NLGSSKIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKG--A-------------------D 439 (594)
T ss_pred HhccCCccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHhhc--c-------------------c
Confidence 765 56899999999999999999999999999999999999999999998877541 0 0
Q ss_pred CCCccccCCcccccccceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEeccCCeeecceeEEeccceEEEEeEEEECCE
Q 003144 530 VLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGF 609 (844)
Q Consensus 530 ~~~T~d~~~Y~y~~~~~akVl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~~v~k~~g~ 609 (844)
.+|. ||++|+|.
T Consensus 440 ----~~f~---------------------------------------------g~~~d~g~------------------- 451 (594)
T PRK01584 440 ----KVFK---------------------------------------------GGLADHSY------------------- 451 (594)
T ss_pred ----cccc---------------------------------------------CCcCcccc-------------------
Confidence 0010 24555543
Q ss_pred EEEEEEeecCCccCCCCCEEEEEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHH
Q 003144 610 VIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEH 689 (844)
Q Consensus 610 i~H~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~ 689 (844)
.+|++|||+|||++||+++||.++.|+|+++.++++||||++++++|+++
T Consensus 452 ------------------------------~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~it~ed 501 (594)
T PRK01584 452 ------------------------------ETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDDE 501 (594)
T ss_pred ------------------------------cHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCCCCHHH
Confidence 47999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCccc
Q 003144 690 LRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHL 769 (844)
Q Consensus 690 L~~IE~~mNeiI~~nlpV~~~~~~~eEA~~~~g~r~~fge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV 769 (844)
+++||+.||++|++|+||++.+++++||++. +..++|+++|++.||||+|+ +++.++||||||
T Consensus 502 L~~IE~~vNeiI~~n~pV~~~~~s~eEA~~~-~~~~lf~e~y~~~VRVV~Ig----------------d~d~elCGGTHV 564 (594)
T PRK01584 502 IKKVEDIVNLQIKNDLSVKKEVMSLEEAREK-GAMALFGEKYEDIVKVYEID----------------GFSKEVCGGPHV 564 (594)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEcCHHHHHhc-chhhhccccCCCcEEEEEEC----------------CeeeeCCCCCCC
Confidence 9999999999999999999999999999996 56677888899999999998 678999999999
Q ss_pred ccccccccEEEEeeeccCCCeEEEEEEe
Q 003144 770 SNTREAEAFALLSEEGIAKGIRRITAVT 797 (844)
Q Consensus 770 ~nTgeIg~fkI~~~s~~~kgv~RI~~vt 797 (844)
+|||+||.|+|++++++++|++||+|+.
T Consensus 565 ~nTgeIG~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 565 ENTGELGTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred CCcccCceEEEEecccccCCeEEEEEEe
Confidence 9999999999999999999999999985
No 7
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=2.2e-190 Score=1704.97 Aligned_cols=667 Identities=29% Similarity=0.480 Sum_probs=611.0
Q ss_pred CCCCChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccccc-cccCCCCcccccccccccccccccCC
Q 003144 55 VVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGG 133 (844)
Q Consensus 55 ~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~fl-G~~~p~~p~~~~~r~~~~QkCiR~gG 133 (844)
.++||++|||++||+||++|||++||||||||+||++||||||||+||||||+ |.++|| ++|+|+||||||+
T Consensus 53 ~~~~~~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp-----~~r~~~sQkCiR~-- 125 (902)
T TIGR03683 53 SKKYTLDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPP-----ANPLVISQPCIRL-- 125 (902)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCCeeEeecchhhhhHhhcCCCCCCC-----CCCceeccccccc--
Confidence 35699999999999999999999999999999999999999999999999998 999886 4799999999999
Q ss_pred CCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHH
Q 003144 134 KHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDI 208 (844)
Q Consensus 134 khnDld~VG~t~rHhTfFEMLGn~SFg-----dYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~i 208 (844)
|||||||+|+||||||||||||||| ||||+|||+|||||| ++||||++|| |+
T Consensus 126 --nDldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l-~~lgi~~~~i--~~------------------ 182 (902)
T TIGR03683 126 --NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFL-EELGIDPEEI--TY------------------ 182 (902)
T ss_pred --cccccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHH-HHcCCCHHHe--ee------------------
Confidence 9999999999999999999999999 999999999999999 9999999999 43
Q ss_pred HHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCC-------CCc
Q 003144 209 WLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES-------DGS 281 (844)
Q Consensus 209 W~~~~~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~-------~g~ 281 (844)
+||||+|| ||||||||||| + | |||||||||||||++ ||+
T Consensus 183 ---------------~enfW~~G--GpcGPcsEi~~-~--g--------------lEiwnlVFmq~~~~~~~~~~~~~g~ 228 (902)
T TIGR03683 183 ---------------KESPWEGG--GNAGPCFEVIV-G--G--------------LELATLVFMQYEEDKEGEIEIKGGR 228 (902)
T ss_pred ---------------cCCccCCC--CCCCCceeeee-C--c--------------EeeeeeeeeeeccccccccccCCCe
Confidence 69999999 99999999999 2 2 999999999999998 899
Q ss_pred cccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCCccccc------
Q 003144 282 LKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADKVD------ 344 (844)
Q Consensus 282 l~~Lp~k~iDTGmGlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~-----------~y~g~~~~~~~~~~~------ 344 (844)
|.|||+||||||||||||+|||||++||||| +|.|||++|++++|++ +|+|+++.++.++++
T Consensus 229 ~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 307 (902)
T TIGR03683 229 YSEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDLRELRKKV 307 (902)
T ss_pred eeeCCCCceecCCCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhccccCccccchhhHHhhhh
Confidence 9999999999999999999999999999999 9999999999999975 477877765543222
Q ss_pred ------------------chhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCccchhhhHHHHH
Q 003144 345 ------------------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVV 406 (844)
Q Consensus 345 ------------------~a~rviaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~ 406 (844)
.++||||||+||++|||+||++|||+|||||||||||||+|++ +.||++.+ |++||++++
T Consensus 308 a~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~ 385 (902)
T TIGR03683 308 ADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIRRTLRLM-RELGLDIP-LSDLVEMQL 385 (902)
T ss_pred hhhcccchhhhhhhccccceEEEEcchHHHHHHHHhcCCccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHH
Confidence 4679999999999999999999999999999999999999999 57999999 999999999
Q ss_pred HHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHhHHhhcccCCChhhHHHHHHHcCce
Q 003144 407 KVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLL 486 (844)
Q Consensus 407 ~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~l~g~~af~Lydt~GfP~dlt~~~a~e~g~~ 486 (844)
+.|++.||||.++++.|++||+.||++|.+||++|+++|++++++ ++.|||++||+||||||||+|||++||+|+|++
T Consensus 386 ~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~~--~~~i~g~~~f~LyDTyGfP~dl~~eia~e~g~~ 463 (902)
T TIGR03683 386 EELKKIYPELKENKDYILDILDLEEEKYRETLERGRRIVERLLKT--KKEIPLDDLIELYDSHGIPPEIVKEIAAELGAE 463 (902)
T ss_pred HHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcCCHHHHHHHHHccCCCHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999999999999975 358999999999999999999999999999999
Q ss_pred eChh-hHHHHHHHHHHHhHhhhhcccCCcccccHHHHHHHhhcCCCCccccCCcc--cccccceEEEEEEeCCeeeeeec
Q 003144 487 VDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFIESVV 563 (844)
Q Consensus 487 vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d~~~Y~--y~~~~~akVl~i~~~~~~v~~~~ 563 (844)
||++ +|+++|++|+++|+++.+. . .... +.+. ++|+|+ +.+|+ |..+++|+|++++.
T Consensus 464 vd~~~~F~~~~~~~~~~~~~~~~~--~----~~~~--~~~~--~~~~T~-~l~y~~~~~~e~~a~Vl~i~~--------- 523 (902)
T TIGR03683 464 VEIPDNFYSIVAERHEKEEKEEEL--P----KDYE--ERAK--DLPETR-RLFYEDPTMREFEAKVLGVFD--------- 523 (902)
T ss_pred ccCCccHHHHHHHHHHHHHhcccc--c----cchh--HHHh--cCCCce-EeccccCccceEEEEEEEEEc---------
Confidence 9998 9999999999998764211 0 1111 1122 457786 66676 44789999999972
Q ss_pred CCCeEEEEeeceeEEeccCCeeecceeEEeccceEEEEeEEEECCEEEEEEEeecCCccCCCCCEEEEEeChhHHhHHHH
Q 003144 564 PGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAP 643 (844)
Q Consensus 564 ~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~~v~k~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~ 643 (844)
.+|+||+|+|||||||||+|+|+|..+++.++|.+|++.+|.++|.+. . +.+++|++|.+.|||+||+.+|+
T Consensus 524 ----~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~--~--~~l~~G~~V~~~VD~~rR~~~m~ 595 (902)
T TIGR03683 524 ----NYVVLDQTAFYPEGGGQPADTGYLITNGGKIRVVDVQKVGGVIVHKVD--G--EGIKEGDEVKGEIDWERRLRLMR 595 (902)
T ss_pred ----CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeC--C--CCCCCCCEEEEEECHHHHHHHHH
Confidence 269999999999999999999999887778999999999999999975 2 44889999999999999999999
Q ss_pred HhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHhhcCc
Q 003144 644 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL 723 (844)
Q Consensus 644 ~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI~~nlpV~~~~~~~eEA~~~~g~ 723 (844)
+|||+|||++||+++||.|++|+|+++.++++||||++.+++|++++++||+.||++|.+|+||++.+++++||++..+.
T Consensus 596 ~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~ 675 (902)
T TIGR03683 596 HHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGF 675 (902)
T ss_pred HHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCch
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999998665
Q ss_pred cccc-CCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeeccCCCeEEEEEEeChHHH
Q 003144 724 RAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAY 802 (844)
Q Consensus 724 r~~f-ge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~~kgv~RI~~vtG~~A~ 802 (844)
+.++ +++|++.||||+|+ ++++++||||||.|||+||.|+|++++++++|++||+++||.+|+
T Consensus 676 ~l~~~~~~~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIG~~kI~~~~~i~~Gv~RIe~v~G~~A~ 739 (902)
T TIGR03683 676 RLYQGGVPPGREIRVVEIE----------------DWDVQACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAGEAAL 739 (902)
T ss_pred hhhccCCCCCCeEEEEEEC----------------CeeeeCCCCCCccchhcCceEEEEEEEEecCCeEEEEEEEChHHH
Confidence 5443 45677899999998 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCcchHHHhhhccc
Q 003144 803 KAFEAACSLEKEVDDASKIEGSLLEKVCSSGY 834 (844)
Q Consensus 803 ~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~f~ 834 (844)
++.+...+++++++++++++..++.+.++.++
T Consensus 740 ~~~~~~~~~l~~~a~~L~~~~~~l~~~v~~l~ 771 (902)
T TIGR03683 740 EYIQELEDLLRESSDILKVPPEQLPETVKRFF 771 (902)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 99999999999999999998777777766654
No 8
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.3e-189 Score=1694.36 Aligned_cols=667 Identities=28% Similarity=0.498 Sum_probs=609.6
Q ss_pred CCCCChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccccc-cccCCCCcccccccccccccccccCC
Q 003144 55 VVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGG 133 (844)
Q Consensus 55 ~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~fl-G~~~p~~p~~~~~r~~~~QkCiR~gG 133 (844)
.++||++|||++||+||++|||++||||||||+||++||||||||+||||||+ |.++|| ++|+|+||||||+
T Consensus 56 ~~~~~~~eiR~~Fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp-----~~~~~~sQ~CiR~-- 128 (900)
T PRK13902 56 SKKYTLKEMREKFLSFFEKHGHTRIERYPVVARWRDDVYLTIASIYDFQPWVTSGLVPPP-----ANPLVISQPCIRL-- 128 (900)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEcCCcCcCCCCCCCeeeeecchhhhhHHhcCCCCCCC-----CCCceecccccch--
Confidence 45699999999999999999999999999999999999999999999999998 999886 4799999999999
Q ss_pred CCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHH
Q 003144 134 KHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDI 208 (844)
Q Consensus 134 khnDld~VG~t~rHhTfFEMLGn~SFg-----dYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~i 208 (844)
|||||||+|+||||||||||||||| ||||+|||+|||||||++|||||+|| |+
T Consensus 129 --nDldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~~lgi~~~~I--~~------------------ 186 (900)
T PRK13902 129 --NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELGIDPEEI--TF------------------ 186 (900)
T ss_pred --hhhhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHhhcCCCHHHe--ee------------------
Confidence 9999999999999999999999999 99999999999999999999999998 33
Q ss_pred HHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCC
Q 003144 209 WLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAK 288 (844)
Q Consensus 209 W~~~~~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k 288 (844)
+||||+|| ||||||||||| + | |||||||||||+|+ +|+|+|||+|
T Consensus 187 ---------------~enfW~~G--GpcGPcsEi~~-~--g--------------lEiwnlVFmqy~~~-~g~~~~Lp~k 231 (900)
T PRK13902 187 ---------------KESWWEGG--GNAGPCFEVLV-R--G--------------LELATLVFMQYKKD-GNRYVEMPLK 231 (900)
T ss_pred ---------------cccccCCC--CCCCCceeeee-C--C--------------EEeeeeeeeEEEcC-CCeeeeCCCC
Confidence 68999999 99999999999 2 2 99999999999998 8999999999
Q ss_pred ccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCCcccc-----c--------
Q 003144 289 HVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADKV-----D-------- 344 (844)
Q Consensus 289 ~iDTGmGlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~-----------~y~g~~~~~~~~~~-----~-------- 344 (844)
|||||||||||+||+||++||||| +|.|||++|++++|++ +|+|+++.++.+++ +
T Consensus 232 ~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 310 (900)
T PRK13902 232 IVDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSLRQKVAKKLGID 310 (900)
T ss_pred eeeCCcCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhcccCCcccchhHHHHHHHHHhhcccc
Confidence 999999999999999999999999 9999999999999975 36677765332211 1
Q ss_pred -----------chhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCccchhhhHHHHHHHhcccC
Q 003144 345 -----------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVF 413 (844)
Q Consensus 345 -----------~a~rviaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~y 413 (844)
.++|+||||+||++|||+||++|||+|||||||||||||+|++ +.||++.+ |++||+++++.|++.|
T Consensus 311 ~~~~~~~~~~~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~~~~~~y 388 (900)
T PRK13902 311 VEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLRLL-DELGLDVP-LSELVDMQIDELKEDY 388 (900)
T ss_pred hhhhhhhccccceEEEEecHHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHHHHHhhhC
Confidence 5788999999999999999999999999999999999999999 57999999 9999999999999999
Q ss_pred hhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHhHHhhcccCCChhhHHHHHHHcCceeCh-hhH
Q 003144 414 PELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDI-EGF 492 (844)
Q Consensus 414 pel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~l~g~~af~Lydt~GfP~dlt~~~a~e~g~~vd~-~~f 492 (844)
|||.++++.|++||..||++|.+||++|.++|++++++. +.|||++||+||||||||+|||++||+|+|++||+ ++|
T Consensus 389 pel~~~~~~I~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~--~~l~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd~p~~F 466 (900)
T PRK13902 389 PELKENRDYILDIVDLEEEKYRETLERGKRIVERLAKKK--EEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNF 466 (900)
T ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHhhhhhcCCCCHHHHHHHHHHcCCccCchhhH
Confidence 999999999999999999999999999999999999875 57999999999999999999999999999999999 799
Q ss_pred HHHHHHHHHHhHhhhhcccCCcccccHHHHHHHhhcCCCCccccCCcc--cccccceEEEEEEeCCeeeeeecCCCeEEE
Q 003144 493 NNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFIESVVPGNEVGI 570 (844)
Q Consensus 493 ~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d~~~Y~--y~~~~~akVl~i~~~~~~v~~~~~~~~~~v 570 (844)
+++|++|+++|+++..+ . ... . ..+ .++|+|+ +.+|+ |..+++|+|++++. .+|
T Consensus 467 ~~~~~~~~~~~~~~~~~--~----~~~-~-~~~--~~~~~T~-~l~y~~~~~~~~~a~Vl~i~~-------------~~v 522 (900)
T PRK13902 467 YSLVAERHEKAEEEEEE--P----VVE-E-ERL--KDLPETE-KLFYEDPYMREFEAKVLGVID-------------NYV 522 (900)
T ss_pred HHHHHHHHHHHhhcccc--c----cch-h-hHh--hcCCCce-EeccccCccceEEEEEEEEEc-------------CEE
Confidence 99999999998764111 0 010 0 112 2457786 66776 44789999999973 269
Q ss_pred EeeceeEEeccCCeeecceeEEeccceEEEEeEEEECCEEEEEEEeecCCccCCCCCEEEEEeChhHHhHHHHHhhHHHH
Q 003144 571 VLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHM 650 (844)
Q Consensus 571 vLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~~v~k~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTAtHL 650 (844)
+||+|+|||||||||+|+|+|..++..++|.+|++.+|.++|.+. . +.+.+|++|.+.|||+||+.+|++|||+||
T Consensus 523 vLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~--~--~~~~~G~~V~~~VD~~rR~~~mr~HTAtHL 598 (900)
T PRK13902 523 VLDQTAFYPEGGGQPADTGVLIVDGKGYKVVDVQKVGGVIVHVLE--G--EPPKKGDEVRGEIDWERRYRLMRHHTATHI 598 (900)
T ss_pred EEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeC--C--CCCCCCCEEEEEECHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877778999999999999999974 2 445569999999999999999999999999
Q ss_pred HHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHhhcCccccc-CC
Q 003144 651 LNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF-GE 729 (844)
Q Consensus 651 L~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI~~nlpV~~~~~~~eEA~~~~g~r~~f-ge 729 (844)
|++|++++||.|++|+|+++.++++||||++.+++|++++.+||+.||++|.+|+||++.+++++||.+..+.+.++ ++
T Consensus 599 L~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~g~ 678 (900)
T PRK13902 599 ILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQGGV 678 (900)
T ss_pred HHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccchhhhccCC
Confidence 99999999999999999999999999999998899999999999999999999999999999999999987765544 46
Q ss_pred cCCCCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeeccCCCeEEEEEEeChHHHHHHHHHH
Q 003144 730 VYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAAC 809 (844)
Q Consensus 730 ~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~~kgv~RI~~vtG~~A~~~~~~~~ 809 (844)
+|++.||||+|+ +++.++||||||.|||+||.|+|++++++++|++||+++||.+|+++.+...
T Consensus 679 ~~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIG~~kI~~~e~i~~Gv~RIe~v~G~~A~~~~~~~~ 742 (900)
T PRK13902 679 PPGKTIRVVEIG----------------DWDVEACGGTHVSNTGEIGPIKILKTERIQDGVERLEFAAGDAAVEYIQELE 742 (900)
T ss_pred CCCCeEEEEEEC----------------CeeeeCCCCCCcCcHhhCeeEEEEEEEEecCCeEEEEEEEChHHHHHHHHHH
Confidence 688899999998 6799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCcchHHHhhhccc
Q 003144 810 SLEKEVDDASKIEGSLLEKVCSSGY 834 (844)
Q Consensus 810 ~~~~~l~e~~~~~~~~l~k~~~~f~ 834 (844)
+.++++++.++++..++.+.++.++
T Consensus 743 ~~l~~~a~~L~~~~~el~~~v~kl~ 767 (900)
T PRK13902 743 DLLKEAAEILGVPPEQLPKTVERFF 767 (900)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Confidence 9999999999998777777776664
No 9
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=5.5e-176 Score=1519.60 Aligned_cols=545 Identities=54% Similarity=0.928 Sum_probs=454.0
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccCCCCCccccccccccccccccccc-CCCCcccccccccccccccccCCCCCCCCC
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTA-DPNTQLSKLTRACNTQKCIRAGGKHNDLDD 140 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~flG~~-~p~~p~~~~~r~~~~QkCiR~gGkhnDld~ 140 (844)
|||++||+||++|||++||||||||+||||||||||||+||||||+|.+ +|+ ++|+|+||||||+|||||||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~~lvp~~d~~llf~~Agm~~fkp~f~g~~~~p~-----~~r~~~~Q~CiR~~GkhnDld~ 75 (552)
T PF01411_consen 1 EIREKFLDFFEKKGHTIVPSSSLVPRWDPTLLFTNAGMNQFKPYFLGGEVPPP-----ANRLVSSQKCIRTGGKHNDLDN 75 (552)
T ss_dssp HHHHHHHHHHHTTT-EEE----SS-TT-TTBSS--SGGGGGCCCCTTSSS--S-----SSCEEEEEEEE-EETTEECGGG
T ss_pred CHHHHHHHHHHHCCCEEeccCCcccCCCCCceeeHhhHHHHHHHhcCCCCCCC-----CCcccccceeeccCCCcchhhh
Confidence 7999999999999999999999999999999999999999999999998 554 5899999999999999999999
Q ss_pred CCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc--CCCCCc
Q 003144 141 VGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRV 218 (844)
Q Consensus 141 VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~--~~~~~I 218 (844)
||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||.| |+||++||+++ +|++||
T Consensus 76 VG~t~rH~T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~~~~l~vt~~~~--------d~ea~~~w~~~~g~~~~~i 147 (552)
T PF01411_consen 76 VGRTGRHHTFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIPPDRLYVTVFEW--------DGEAGEIWEKIVGGPEERI 147 (552)
T ss_dssp TTTSSS--SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--GGGEEEEEECC--------ECCCCCCCCECCTTECCCE
T ss_pred cCCCceEeeehhhccccccccccHHHHHHHHHHHHHhhcCCChHhEEEEEeCC--------chhHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999986 56999999999 999999
Q ss_pred ccCCCCCCcccCCCCCCCcCceeEEeecCCCCC---CCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCch
Q 003144 219 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRD---AASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (844)
Q Consensus 219 ~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~---~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTGmG 295 (844)
++||.+||||+||++||||||||||||+|..+. +.+.++++++||+||||+|||||+|++||++.|||+++||||||
T Consensus 148 ~~~~~~~nfw~~g~~gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~~~~eiwn~vf~q~~~~~~g~~~~L~~~~idtGmg 227 (552)
T PF01411_consen 148 LVFGKKDNFWEMGDTGPCGPCSEIFYDRGEERGCWDSQGTPTCDDDRFLEIWNLVFMQYNRDEDGSLEPLPKKNIDTGMG 227 (552)
T ss_dssp EEE-CCEEEEESSTSEEEEEEEEEEEEEECCCHHHHHHSTSSHHHHHECCCCCCCCCEEEETTTSHCCCCCCCCCCCCEE
T ss_pred EecCCCCceEECCCCCCCCCCEEEEECCCcccCccccccccccccccHHHHHHHHHHHhccccccccccccchhhhcCCC
Confidence 999999999999999999999999999976543 34677889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcccccchhhhhhhhhhheeeeecCCCccCCCCcchH
Q 003144 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (844)
Q Consensus 296 lERl~~vlqg~~snydtd~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~a~rviaDH~R~~~~~i~DG~~Psn~grgYv 375 (844)
|||++++|||++|||+||+|.|+++.+++++++ +|. +....++|+|+||||+||++|||+||++|||+|||||
T Consensus 228 ler~~~~lq~~~s~~~tdlf~~i~~~i~~~~~~-~y~------~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~GrGYv 300 (552)
T PF01411_consen 228 LERLAAVLQGVRSNYDTDLFMPIIEAIEELSGV-PYK------DEEEIDVALRVIADHIRALTFAIADGVLPSNEGRGYV 300 (552)
T ss_dssp HHHHCHHHCCHCCHHHCHHTCHHHHHHHHHHC---TT------SSCCCHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHH
T ss_pred cHHHHHHHhhhhhhhchhhhhhHHHHHHHHcCC-Ccc------cccccccEEEEEcchhhceeeEecCCeeecccCCcch
Confidence 999999999999999999999999999999997 572 2345688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccchhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C
Q 003144 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-G 454 (844)
Q Consensus 376 lRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~-~ 454 (844)
||||||||+|++ ++||++.+||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++ +
T Consensus 301 lRriiRRa~r~~-~~lg~~~~fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~ 379 (552)
T PF01411_consen 301 LRRIIRRAVRFG-RKLGIEEPFLYELVPVVIESMGDFYPELKENKDYIKDIIKEEEERFLKTLERGLKLLEKLIKKLKKK 379 (552)
T ss_dssp HHHHHHHHHHHH-HHTT-SS--HHHHHHHHHHHHTTTGTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH-HHhCCCccchHHHHHHHHHHhhccChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999 68999999999999999999999999999999999999999999999999999999999999976 6
Q ss_pred CCCChHHhHHhhcccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCcccccHHHHHHHhhcCCCCcc
Q 003144 455 KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATD 534 (844)
Q Consensus 455 ~~l~g~~af~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~ 534 (844)
++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++.... ...+. ..+. .++.++
T Consensus 380 ~~lsge~aF~LYDTyGfP~Dlt~eia~e~gl~vD~~~f~~~m~~qr~~sr~~~~~~~~--~~~~~---~~~~--~l~~~t 452 (552)
T PF01411_consen 380 KELSGEDAFKLYDTYGFPLDLTEEIAEEKGLSVDEEGFEYAMEEQRERSRAAKKKKSS--IEEDV---SALA--ELPKTT 452 (552)
T ss_dssp SEE-HHHHHHHHHHH---HHHHHHHHHTTT-EE-HHCCHHHHHHHCHHHCCHH----------SS---STTT--TCHHHE
T ss_pred cCCChHHheeehhccCCCHHHHHHHHHHhceeecHHHHHHHHHHHHHHhhhccccccc--hhhhH---HHHh--hhhccc
Confidence 7999999999999999999999999999999999999999999999999876543220 01111 1111 344556
Q ss_pred ccCCcccccccceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEeccCCeeecceeEEeccceEEEEeEEEECCEEEEEE
Q 003144 535 DSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIG 614 (844)
Q Consensus 535 d~~~Y~y~~~~~akVl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~~v~k~~g~i~H~~ 614 (844)
+|.+|+ ..+++|+|++|+.+++++.++..++...||||+|+||||||||++|+|+|..++..+.|.+|++.+|+++|.+
T Consensus 453 eF~gYe-~~~~~akVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~ 531 (552)
T PF01411_consen 453 EFVGYE-YLECEAKVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQPGDTGTIIGDGGEFEVTDVQKVGGVILHIG 531 (552)
T ss_dssp ETCCCC-------TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB----EEECCTTEEEEEEEEEEETTEEEEEE
T ss_pred ccceee-cccccceEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCCCCCeEEEeecceEEEEEEEEEECCEEEEEE
Confidence 799999 5688999999999888888888888889999999999999999999999998888999999999999999999
Q ss_pred EeecCCccCCCCCEEEEEeChhH
Q 003144 615 SLTEGAGRFSVGEEVICKVDYDR 637 (844)
Q Consensus 615 ~~~~~~~~l~~G~~V~~~VD~er 637 (844)
.... +.+++|+.|.++|||+|
T Consensus 532 ~~~~--g~l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 532 EVES--GSLKVGDEVTAEVDWER 552 (552)
T ss_dssp SSG---GG--TTSEEEEEE-HHH
T ss_pred eccC--CCCCCCCEEEEEecCCC
Confidence 8654 78999999999999986
No 10
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=9.5e-109 Score=844.38 Aligned_cols=230 Identities=63% Similarity=1.115 Sum_probs=222.1
Q ss_pred hHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCCCC
Q 003144 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLD 139 (844)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~flG~~~p~~p~~~~~r~~~~QkCiR~gGkhnDld 139 (844)
++|||++||+||++|||+++|||||||++|||||||||||+||||||+|+++|+ ++|+|++|||||+ ||||
T Consensus 1 ~~eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM~~Fkp~f~G~~~p~-----~~r~~~~QkCiR~----~Die 71 (232)
T cd00673 1 ASEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPP-----ANRLVNSQKCIRA----GDID 71 (232)
T ss_pred ChHHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccchhhhhHHhcCCCCCC-----CCceeeeeeceec----CChh
Confidence 479999999999999999999999999999999999999999999999999886 5899999999999 8999
Q ss_pred CCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc--CCCCC
Q 003144 140 DVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASR 217 (844)
Q Consensus 140 ~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~--~~~~~ 217 (844)
|||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||+| |+||++||.+. +|++|
T Consensus 72 nVG~t~rHhTfFEMLGNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~vTv~~~--------dde~~~~w~~~~g~~~~~ 143 (232)
T cd00673 72 NVGKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEG--------DDEEEAIWWWKIGLPGIR 143 (232)
T ss_pred hccccccchhhhhhhcccchhhhhHHHHHHHHHHHHHhhcCCCccceEEEEeCC--------CHHHHHHHHHhhCCCHHH
Confidence 999999999999999999999999999999999999999999999999999985 89999999988 99999
Q ss_pred cccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCchHH
Q 003144 218 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (844)
Q Consensus 218 I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTGmGlE 297 (844)
|++++.+||||+||++||||||||||||+|++.++..++++|++|||||||||||||+|++||+|.|||+||||||||||
T Consensus 144 i~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~r~lEIWNlVFmqy~r~~~g~l~pLp~k~IDTGmGlE 223 (232)
T cd00673 144 IERIGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLE 223 (232)
T ss_pred eeeCCccCCCCCCCCCcCCCCCEEEEEccCCCcCccccccCCCCCEEEEeeeeeeeeeccCCCCCccCCCCeeeCCcCHH
Confidence 99999999999999999999999999999887666668889999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 003144 298 RLTSILQNK 306 (844)
Q Consensus 298 Rl~~vlqg~ 306 (844)
||||||||+
T Consensus 224 Rla~vlQg~ 232 (232)
T cd00673 224 RLVWVLQGV 232 (232)
T ss_pred HHHHHHcCC
Confidence 999999996
No 11
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=2.8e-43 Score=367.33 Aligned_cols=226 Identities=29% Similarity=0.430 Sum_probs=205.3
Q ss_pred cccccceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEeccCCeeecceeEEeccceEEEEeEEEECCEEEEEEEeecCC
Q 003144 541 WFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGA 620 (844)
Q Consensus 541 y~~~~~akVl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~~v~k~~g~i~H~~~~~~~~ 620 (844)
|..+++|+|+.+..+ .|+||+|+|||+|||||+|+|+|.+.++...|.++.+.+..|+|++...
T Consensus 11 y~~e~~~~v~~v~~~-------------~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~~~~~~~~~~~~I~H~~~~~--- 74 (241)
T COG2872 11 YLKEFEATVVDVEDN-------------EIVLDRTIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLAEH--- 74 (241)
T ss_pred ccccceEEEEEEeCC-------------eEEEEeccccCCCCCCcCCceEEEeCCceEEEEEEEecceEEEEEecCc---
Confidence 678899999998642 6999999999999999999999999999999999999999999987532
Q ss_pred ccCCCCCEEEEEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHH
Q 003144 621 GRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQ 700 (844)
Q Consensus 621 ~~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNei 700 (844)
..+++|++|.+.|||+||+.+|++|||+|||++++.+.++ .+..|.++.++..|+||+.+. +++.+.++++++|++
T Consensus 75 ~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~--~~~~g~~i~~d~~~iD~~~e~--~~~~~~~v~~~~ne~ 150 (241)
T COG2872 75 AKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYARIDFDGED--TEDEIEEVEALANEL 150 (241)
T ss_pred ccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc--ceeecceeccccccccccccc--chhhHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999998 456888999999999998644 889999999999999
Q ss_pred HHcCCCeEEEEcCHHHHHhhcCcccccCCcCC---CCEEEEEECCcccccccCCCCccccCceEeeccCccccccccccc
Q 003144 701 IKAELDVFSKEATLAEAKCINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 777 (844)
Q Consensus 701 I~~nlpV~~~~~~~eEA~~~~g~r~~fge~y~---d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~ 777 (844)
|++|+||...+++++||.+.++.+++-...++ ..+|+|+|+ ++++++||||||+||+|||.
T Consensus 151 v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~----------------did~qpCgGtHVk~T~EIG~ 214 (241)
T COG2872 151 VKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIG----------------DIDVQPCGGTHVKNTGEIGE 214 (241)
T ss_pred HHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEEC----------------CeeccCCCCcccCCccceEE
Confidence 99999999999999999999998876553333 379999998 68999999999999999999
Q ss_pred EEEEeeeccCCCeEEEEEEeChHHH
Q 003144 778 FALLSEEGIAKGIRRITAVTTGLAY 802 (844)
Q Consensus 778 fkI~~~s~~~kgv~RI~~vtG~~A~ 802 (844)
|+|++.++++++.+||++.+|.+|.
T Consensus 215 Iki~k~e~k~k~~~Rv~f~~~~~~~ 239 (241)
T COG2872 215 IKILKTEKKGKGNRRVYFTLGERAS 239 (241)
T ss_pred EEEEEEEEecCceEEEEEEeccccc
Confidence 9999999999999999999998764
No 12
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=4.6e-43 Score=366.56 Aligned_cols=209 Identities=27% Similarity=0.385 Sum_probs=176.7
Q ss_pred eEEEEeeceeEEeccCCeeecceeEEecc--ceEEEEeEEEECCEEEEEEEeec----CCccCCCCCEEEEEeChhHHhH
Q 003144 567 EVGIVLASSSFYAEQGGQIFDEGFIEGLF--GSFYVRNVQIYGGFVIHIGSLTE----GAGRFSVGEEVICKVDYDRRKL 640 (844)
Q Consensus 567 ~~~vvLD~T~FYpegGGQ~~D~G~I~~~~--~~~~V~~v~k~~g~i~H~~~~~~----~~~~l~~G~~V~~~VD~erR~~ 640 (844)
.+.|+||+|+|||||||||+|+|+|...+ ..+.|.+|++.+|+++|++.+.. +.+.|.+|++|.++|||+||+.
T Consensus 2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR~~ 81 (223)
T PLN02961 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRRKL 81 (223)
T ss_pred CeEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHHhh
Confidence 46799999999999999999999997632 46999999999999999986532 1246889999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHh-hCCceeeccccccCCceEEEecCCCCCCHHH----HHHHHHHHHHHHHcCCCeEEEEcCHH
Q 003144 641 IAPNHTCTHMLNFALREV-LGDHVDQKGSVVLPEKLRFDFSHGKPVDPEH----LRRIESIVNEQIKAELDVFSKEATLA 715 (844)
Q Consensus 641 ~m~~HTAtHLL~aALr~v-lg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~----L~~IE~~mNeiI~~nlpV~~~~~~~e 715 (844)
+|++|||+|||++||+++ +|..+.+.|+++ +++.|+||. ..++.++ +.+||+++|++|++++||+..+++++
T Consensus 82 ~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~-~~~~~v~~~--~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~~ 158 (223)
T PLN02961 82 HSRLHSAGHLLDVCMARVGLGPLEPGKGYHF-PDGPFVEYK--GKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYD 158 (223)
T ss_pred hhccCcHHHHHHHHHHHcCCCcccccccccc-CCccceeec--ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCHH
Confidence 999999999999999998 787777788775 678888875 4566655 47999999999999999999999999
Q ss_pred HHHhhcCcccccCCc-CCCCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeeccCCCeEEEE
Q 003144 716 EAKCINGLRAVFGEV-YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (844)
Q Consensus 716 EA~~~~g~r~~fge~-y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~~kgv~RI~ 794 (844)
||+++.+. .++... ..+.+|+|+|+ +++.++||||||.||++||.|+|++.+ +++|.+||+
T Consensus 159 ea~~~~~~-~~~~~~~~~~~vRiV~I~----------------~~d~~~CgGTHv~nT~eig~i~I~~~~-~~kg~~Rv~ 220 (223)
T PLN02961 159 EAAELCGG-SLPDYIAKDSTPRIVKIG----------------DSPGCPCGGTHVADVSEITSVKVTQIR-VKKGVTRVS 220 (223)
T ss_pred HHHHhcCC-cCCCcCCCCCceEEEEEC----------------CCccCccCCcccCchhccccEEEEEEE-ecCCEEEEE
Confidence 99987432 222211 14679999998 578899999999999999999999986 568999999
Q ss_pred EE
Q 003144 795 AV 796 (844)
Q Consensus 795 ~v 796 (844)
+.
T Consensus 221 ~~ 222 (223)
T PLN02961 221 YT 222 (223)
T ss_pred Ee
Confidence 74
No 13
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=99.96 E-value=2.1e-29 Score=261.20 Aligned_cols=254 Identities=21% Similarity=0.279 Sum_probs=197.0
Q ss_pred cceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEeccCCeeecceeEEeccceEEEEeEEEECCEEEEEEEeecCCccCC
Q 003144 545 HKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFS 624 (844)
Q Consensus 545 ~~akVl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~~v~k~~g~i~H~~~~~~~~~~l~ 624 (844)
+++.|+++...+. ...+-+.+.+.|.+|++||||||||+|.|++. ...|..|.+.|-..-|... .++.
T Consensus 24 fkt~vvsc~p~~~---kk~eieg~~i~lqdtiLfpegggqp~d~gf~~----~v~V~~VsR~G~~A~H~~~-----~~ie 91 (415)
T KOG2105|consen 24 FKTLVVSCEPTKN---KKGEIEGYEIELQDTILFPEGGGQPSDSGFLK----IVEVSHVSRFGLHAKHHVN-----DYIE 91 (415)
T ss_pred ccccccccccccC---CcceeecceeeeeeeEeccCCCCCCCcccccc----ceeEEEeeccccchhhccC-----CCCC
Confidence 4566666654221 11123567899999999999999999999994 3568888887777767653 6899
Q ss_pred CCCEEEEEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecC-CCCCCHHHHHHHHHHHHHHHHc
Q 003144 625 VGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSH-GKPVDPEHLRRIESIVNEQIKA 703 (844)
Q Consensus 625 ~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~-~~~lt~E~L~~IE~~mNeiI~~ 703 (844)
+|.+|.+.|||+||.++|++||++||+.+.+.++|.-.. ..+.+ .+|+--... -.++|.|++..||+.+|+.|..
T Consensus 92 PGt~V~V~VD~qkR~D~MQQHsGQHLitAvad~~fKlkT--tSWel--G~~~sa~e~~~~~mTaeqvaaieqsvNe~I~d 167 (415)
T KOG2105|consen 92 PGTTVEVAVDEQKRMDYMQQHSGQHLITAVADHLFKLKT--TSWEL--GRFRSAIELDTPSMTAEQVAAIEQSVNEKIRD 167 (415)
T ss_pred CCCeEEEEecHHHHhHHHHHhcchhHHHHHHHhhhccce--eeeec--cceeeccccCCCCccHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999986543 22222 344433221 2478999999999999999999
Q ss_pred CCCeEEEEcCHHH--HHhhcCcccccCCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEE
Q 003144 704 ELDVFSKEATLAE--AKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALL 781 (844)
Q Consensus 704 nlpV~~~~~~~eE--A~~~~g~r~~fge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~ 781 (844)
-+|+.+.+.+.++ ..+..+ +.++. .-..++|+|.|+ +.+.++||||||.||++|+.++|+
T Consensus 168 ~~~~~v~E~sl~d~eVeqVS~-~~~~D-~haG~iRvvnI~----------------~vDSN~CCGTHvs~~Sdl~vI~IL 229 (415)
T KOG2105|consen 168 RLPVNVRELSLDDPEVEQVSG-RGLPD-DHAGPIRVVNIE----------------GVDSNMCCGTHVSNLSDLQVIKIL 229 (415)
T ss_pred ccchheeecccCCcchhhccC-CCCcc-cccCceEEEeec----------------CccCCccccccccchhhcceEEEe
Confidence 9999988876653 333322 22111 122579999998 688999999999999999999999
Q ss_pred eeeccCCCeEEEEEEeChHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhc
Q 003144 782 SEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCSS 832 (844)
Q Consensus 782 ~~s~~~kgv~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~ 832 (844)
+.++..+|..-+.+.+|.+...+.+.....++.+..+++|....+...++.
T Consensus 230 gtekg~k~rtN~~f~~GnRV~~~mersh~t~~a~taLLkCgaed~vEavkk 280 (415)
T KOG2105|consen 230 GTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCGAEDHVEAVKK 280 (415)
T ss_pred eccccccCccceEEEeccHHHHHHHHhcchHHHHHHHHhcchHHHHHHHHH
Confidence 999888887778888899999999999999999999999954444434433
No 14
>PLN02837 threonine-tRNA ligase
Probab=99.93 E-value=3.5e-25 Score=262.43 Aligned_cols=189 Identities=21% Similarity=0.320 Sum_probs=163.5
Q ss_pred CCEEEEEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCC
Q 003144 626 GEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAEL 705 (844)
Q Consensus 626 G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI~~nl 705 (844)
-..|++.+|...|...+++||++|||++|++++||....+.|+.+ ++|+||||.. .++|++++.+||++||++|++|+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~-~~g~y~D~~~-~~lt~edl~~IEk~m~~iI~~n~ 106 (614)
T PLN02837 29 PERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWI-ENGFYYDFDM-EPLTDKDLKRIKKEMDRIISRNL 106 (614)
T ss_pred CceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCCEEEEecC-CCCCHHHHHHHHHHHHHHHHcCC
Confidence 357999999999999999999999999999999998777788654 7899999987 58999999999999999999999
Q ss_pred CeEEEEcCHHHHHhhcCcc------cccCCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCccccccccc--cc
Q 003144 706 DVFSKEATLAEAKCINGLR------AVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA--EA 777 (844)
Q Consensus 706 pV~~~~~~~eEA~~~~g~r------~~fge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeI--g~ 777 (844)
||++.+++++||.+++... .+......+.||+++++ +.+.++|+||||+|||+| +.
T Consensus 107 pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig----------------~~~~D~c~GpHv~sTg~I~~~~ 170 (614)
T PLN02837 107 PLVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIG----------------EEWWDLCAGPHVERTGKINKKA 170 (614)
T ss_pred CEEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEEC----------------CeEEEecCCCCcccccccccce
Confidence 9999999999999875321 01111112468999987 346899999999999999 99
Q ss_pred EEEEeeecc-------CCCeEEEEEEeChHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhccccc
Q 003144 778 FALLSEEGI-------AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCSSGYFS 836 (844)
Q Consensus 778 fkI~~~s~~-------~kgv~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~f~f~ 836 (844)
|+|.+.++. +..++||++++ +...+.++++++.++++.++||++||+++++|.|+
T Consensus 171 ~kl~~~~g~ywrg~~~~~~l~ri~g~~----~~~~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~~ 232 (614)
T PLN02837 171 VELESVAGAYWRGDEKNQMLQRIYGTA----WESEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQ 232 (614)
T ss_pred EEEEEeehhhhcccccCcceEEEEEEe----cCCHHHHHHHHHHHHHhhhCCHHHHHHHcCCcccC
Confidence 999998884 46799999995 55789999999999999999999999999999986
No 15
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=9e-24 Score=249.63 Aligned_cols=176 Identities=24% Similarity=0.342 Sum_probs=151.1
Q ss_pred hHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHH
Q 003144 639 KLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAK 718 (844)
Q Consensus 639 ~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI~~nlpV~~~~~~~eEA~ 718 (844)
...+++|||+|||++|++++||......| +..++|+||||..+.++|++++.+||++||++|++|+||++..++++||.
T Consensus 5 g~~~~~hS~~hlL~~A~~~~~~~~~~~~~-~~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~ 83 (575)
T PRK12305 5 GLEVIRHSAAHVLAQAVQELFPDAKLGIG-PPIEDGFYYDFDVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAR 83 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceEEeC-CCcCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHH
Confidence 34579999999999999999997666566 45589999999987789999999999999999999999999999999999
Q ss_pred hhcCccc----ccCCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeecc-------C
Q 003144 719 CINGLRA----VFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------A 787 (844)
Q Consensus 719 ~~~g~r~----~fge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~-------~ 787 (844)
+++.... ++....++.||+++++ + ..++|+||||+|||+||.|+|+++++. +
T Consensus 84 ~~f~~~~~k~~l~~~~~~~~vri~~ig----------------~-~~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~ 146 (575)
T PRK12305 84 EEFANEPYKLELIDDIPEEGITIYDNG----------------D-FEDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKN 146 (575)
T ss_pred HhCCcChhHHHhhhhcCCCeEEEEEEC----------------C-EEEECCCCCCCCccCCceeEEEEEcceEECCCCCC
Confidence 9864211 1222233469999997 3 458999999999999999999998554 7
Q ss_pred CCeEEEEEEeChHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhccccc
Q 003144 788 KGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCSSGYFS 836 (844)
Q Consensus 788 kgv~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~f~f~ 836 (844)
++++||++++ +...+++++++++++++.++||+.|++++++|.++
T Consensus 147 ~~l~Ri~g~~----~~~~~~l~~~~~~~~e~~~~dh~~l~~~~~l~~~~ 191 (575)
T PRK12305 147 PQLQRIYGTA----WETKEELKEYLKRLEEAKKRDHRKLGKELDLFSFP 191 (575)
T ss_pred cceEEEEEEe----cCCHHHHHHHHHHHHHhhhccHHHHHHhcCccccc
Confidence 8999999995 55788999999999999999999999999999876
No 16
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.90 E-value=4.4e-23 Score=246.39 Aligned_cols=176 Identities=23% Similarity=0.310 Sum_probs=151.0
Q ss_pred hHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHH
Q 003144 639 KLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAK 718 (844)
Q Consensus 639 ~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI~~nlpV~~~~~~~eEA~ 718 (844)
...+++||++|||++|++++||......|+. .++|+||||....++|++++.+||++||++|++|+||++.+++++||.
T Consensus 71 g~~iy~hS~~hlL~~A~~~~~~~~~~~i~~~-~~~g~y~d~~~~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~ 149 (639)
T PRK12444 71 GVEIARHSAAHILAQAVKRLYGDVNLGVGPV-IENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAA 149 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcEEEeCCc-CCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHH
Confidence 3468999999999999999999876666754 489999999987789999999999999999999999999999999999
Q ss_pred hhcCccc------ccCCcCC-CCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeecc-----
Q 003144 719 CINGLRA------VFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI----- 786 (844)
Q Consensus 719 ~~~g~r~------~fge~y~-d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~----- 786 (844)
++|.... ++..... ..|++++++ .++++|+||||+|||+|+.|+|+++++.
T Consensus 150 ~~F~~~~~~~K~~ll~~~~~~~~v~iy~~~-----------------~~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~ 212 (639)
T PRK12444 150 KLFQEMNDRLKLELLEAIPSGESITLYKQG-----------------EFVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGD 212 (639)
T ss_pred HHHhhcCCchHHHHHhcCCCCCeEEEEEEC-----------------CEEEEcCCcCCCCCCCCceeEEEEEcceEEcCC
Confidence 9865321 1111111 347777775 4689999999999999999999998886
Q ss_pred --CCCeEEEEEEeChHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhccccc
Q 003144 787 --AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCSSGYFS 836 (844)
Q Consensus 787 --~kgv~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~f~f~ 836 (844)
+++++||+++ |++..++++++++.++++.++||++|++++++|.|+
T Consensus 213 ~~~~~l~Ri~g~----a~~~~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~ 260 (639)
T PRK12444 213 SNNQVLQRIYGV----AFSSQKELEEYLHFVEEAAKRNHRKLGKELELFMFS 260 (639)
T ss_pred CCCcceEEEEEE----ecCCHHHHHHHHHHHHHhccCCHHHHHHHcCCcccc
Confidence 6799999999 556889999999999999999999999999999884
No 17
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=9.9e-23 Score=243.54 Aligned_cols=193 Identities=22% Similarity=0.287 Sum_probs=160.2
Q ss_pred cCCCCCEEEEEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHH
Q 003144 622 RFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQI 701 (844)
Q Consensus 622 ~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI 701 (844)
.+..+..|+..-....+...+++||++|||++|++++||......| +..++|+||||..+.++|++++.+||++||++|
T Consensus 50 ~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~~~~~~~~-~~~~~g~y~d~~~~~~lt~e~l~~Ie~~m~~iI 128 (638)
T PRK00413 50 PIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIG-PVIENGFYYDFDRERPFTPEDLEAIEKEMKEII 128 (638)
T ss_pred cccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcCCceEEEC-CccCCeEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 3445566666666667788899999999999999999987655556 455899999999877899999999999999999
Q ss_pred HcCCCeEEEEcCHHHHHhhcCccc------ccCCcCC-CCEEEEEECCcccccccCCCCccccCceEeeccCcccccccc
Q 003144 702 KAELDVFSKEATLAEAKCINGLRA------VFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTRE 774 (844)
Q Consensus 702 ~~nlpV~~~~~~~eEA~~~~g~r~------~fge~y~-d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTge 774 (844)
++|+||++..++++||.+++.... ++..... +.+|+++++ .++++|+||||+|||+
T Consensus 129 ~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~-----------------~~~d~c~G~hv~~Tg~ 191 (638)
T PRK00413 129 KENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQG-----------------EFVDLCRGPHVPSTGK 191 (638)
T ss_pred hcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEEC-----------------CEEEECCCCCCCcccC
Confidence 999999999999999999864321 1111111 257777776 3578999999999999
Q ss_pred cccEEEEeeecc-------CCCeEEEEEEeChHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhccccc
Q 003144 775 AEAFALLSEEGI-------AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCSSGYFS 836 (844)
Q Consensus 775 Ig~fkI~~~s~~-------~kgv~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~f~f~ 836 (844)
|+.|+|+++++. +++++||++++.+ ..++++++++.++++.+++|+.+++++++|.|+
T Consensus 192 i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~~----~~~~l~~~~~~~~e~~~~~h~~l~~~~~~~~~~ 256 (638)
T PRK00413 192 IKAFKLLKVAGAYWRGDSKNKMLQRIYGTAFA----DKKELDAYLHRLEEAKKRDHRKLGKELDLFHFQ 256 (638)
T ss_pred CceeEEEEEcceEEcCCCcchheEEEEeeecC----CHHHHHHHHHHHHHhccccHHHHHHhcCEEEec
Confidence 999999998654 7899999999554 678889999999999999999999999999885
No 18
>PLN02908 threonyl-tRNA synthetase
Probab=99.87 E-value=2.6e-21 Score=232.35 Aligned_cols=175 Identities=21% Similarity=0.271 Sum_probs=145.8
Q ss_pred hHHHHHhhHHHHHHHHHHHhhCCceeeccccccC-CceEEEecCC-CCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHH
Q 003144 639 KLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLP-EKLRFDFSHG-KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAE 716 (844)
Q Consensus 639 ~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~-d~~r~Df~~~-~~lt~E~L~~IE~~mNeiI~~nlpV~~~~~~~eE 716 (844)
..-+++||++|||.+|++++||.. ...|+++.+ +||||||..+ .++|++++.+||++|+++|++++||++.+++++|
T Consensus 118 g~~~y~hS~ahlL~~A~~~~~~~~-l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~ee 196 (686)
T PLN02908 118 GRDTFWHSSAHILGEALELEYGCK-LCIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREE 196 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCe-EEecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHH
Confidence 356899999999999999999754 457766643 8999998743 5799999999999999999999999999999999
Q ss_pred HHhhcCccc----ccCCcCC--CCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeecc----
Q 003144 717 AKCINGLRA----VFGEVYP--DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI---- 786 (844)
Q Consensus 717 A~~~~g~r~----~fge~y~--d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~---- 786 (844)
|.++|.... +... .+ +.++|.++| ..+++|+||||+|||+|+.|+|+++++.
T Consensus 197 A~e~F~~~~~K~~ll~~-~~~~~~v~vY~~g-----------------~~~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg 258 (686)
T PLN02908 197 ALEMFSENKFKVEIIND-LPEDATITVYRCG-----------------PLVDLCRGPHIPNTSFVKAFACLKASSAYWRG 258 (686)
T ss_pred HHHHHhhCCcHHHHHhh-CCCCCeeEEEEEC-----------------CEEEecCCCCCCCCCccceeEEEEecceEEcC
Confidence 999864321 1111 12 235665554 5789999999999999999999998854
Q ss_pred ---CCCeEEEEEEeChHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhccccc
Q 003144 787 ---AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCSSGYFS 836 (844)
Q Consensus 787 ---~kgv~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~f~f~ 836 (844)
+..++||++++.+ ..+.++++++.++++.++||+.|++++++|+|+
T Consensus 259 ~~~~~~lqRi~G~sfp----~~~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~ 307 (686)
T PLN02908 259 DVDRESLQRVYGISFP----DKKLLKEYKHRIEEAKKRDHRLLGQKQELFFFH 307 (686)
T ss_pred CCcchhhEEEeeeccC----ChHHHHHHHhhhhhccccCHHHHHHhcCCeeec
Confidence 4579999999655 678899999999999999999999999999996
No 19
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.85 E-value=4.5e-21 Score=226.17 Aligned_cols=171 Identities=25% Similarity=0.287 Sum_probs=149.3
Q ss_pred HhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHhhcCc
Q 003144 644 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL 723 (844)
Q Consensus 644 ~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI~~nlpV~~~~~~~eEA~~~~g~ 723 (844)
+||++|||++|+++++|....+.|+.+ ++++||||....++|++++.+||++||++|.+|+||+...++++||.+++.
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~- 78 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFK- 78 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHh-
Confidence 699999999999999998878888766 778999999877899999999999999999999999999999999999865
Q ss_pred c------cccCCc-CCCCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeecc-------CCC
Q 003144 724 R------AVFGEV-YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKG 789 (844)
Q Consensus 724 r------~~fge~-y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~-------~kg 789 (844)
. .++.+. +.+.|+++.++ +.+.++|+||||+|||.|+.|+|+++++. +..
T Consensus 79 ~~~~~k~~Ll~~~~~~~~v~vy~~g----------------~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~ 142 (563)
T TIGR00418 79 VLEPYKLELLDEIPNGVKRTPYGWG----------------KAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKM 142 (563)
T ss_pred ccChhHHHHHhcCCCCCeEEEEEeC----------------CEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCc
Confidence 1 122222 33568888886 44899999999999999999999987765 467
Q ss_pred eEEEEEEeChHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhccccc
Q 003144 790 IRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCSSGYFS 836 (844)
Q Consensus 790 v~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~f~f~ 836 (844)
++||++++ +...+.++++++.++++..+||++|++++++|.|+
T Consensus 143 l~Ri~g~~----~~~~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~ 185 (563)
T TIGR00418 143 LQRIYGTA----WADKKQLAAYLLRLEEAKKRDHRKLGKELELFSFE 185 (563)
T ss_pred eEeeeecc----CCCHHHHHHHHHhhhhhhcCCHHHHHHhCCCcccC
Confidence 99999985 55788999999999999999999999999999887
No 20
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=3.5e-19 Score=207.21 Aligned_cols=175 Identities=26% Similarity=0.372 Sum_probs=147.7
Q ss_pred HhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHH
Q 003144 638 RKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEA 717 (844)
Q Consensus 638 R~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI~~nlpV~~~~~~~eEA 717 (844)
...-..+||++|||..|+++++|+ ...| ++.++|||+||....+||++++.+||+.|+++|.++++|++..+++++|
T Consensus 24 ~~~~~~rhs~ah~l~~av~~l~p~--~~~g-p~ie~gfyyd~~~~~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a 100 (589)
T COG0441 24 EGLEIIRHSCAHVLAQAVKRLYPD--VTIG-PVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEA 100 (589)
T ss_pred cchhhhhhHHHHHHHHHHHHhCCC--cccc-CcccceeEEeeccCCCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHH
Confidence 445568899999999999999998 5678 7789999999998888999999999999999999999999999999999
Q ss_pred HhhcCcccccCCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeecc-------CCCe
Q 003144 718 KCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGI 790 (844)
Q Consensus 718 ~~~~g~r~~fge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~-------~kgv 790 (844)
++.|+ .|+ +.+|+-- ..+-+.|..+.+.++|-||||+|||.| .|++++.++. ++..
T Consensus 101 ~~~f~-------~yK--~~~i~~~-------~~~~s~y~~~~~~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l 163 (589)
T COG0441 101 RAPFG-------PYK--AELIDCK-------GHPLSEYSQGEFVDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEML 163 (589)
T ss_pred HHHhh-------hhH--HHHHhcC-------CCCceeEecCccccccCCCCCCccceE-EEEEEEecchhhccCCCCcce
Confidence 99864 232 1111110 012334555678999999999999999 9999988765 6678
Q ss_pred EEEEEEeChHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhccccc
Q 003144 791 RRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCSSGYFS 836 (844)
Q Consensus 791 ~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~f~f~ 836 (844)
+||+++ |+...+.++.++++++++.++||+++++++++|.|+
T Consensus 164 ~riygt----a~~~~~~l~~~l~~~eea~krdHrklg~el~LF~~~ 205 (589)
T COG0441 164 QRIYGT----AFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFS 205 (589)
T ss_pred eEEecc----ccCCHHHHHHHHhhhhhccCCchHhHHHhhcceeec
Confidence 999999 456788899999999999999999999999999999
No 21
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.29 E-value=4.7e-12 Score=99.62 Aligned_cols=44 Identities=52% Similarity=0.869 Sum_probs=37.7
Q ss_pred EEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeeccCCCeEEEE
Q 003144 735 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (844)
Q Consensus 735 VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~~kgv~RI~ 794 (844)
||+|+|+ +++.++||||||+|||+|+.|+|++.++.++|++|||
T Consensus 1 vRvv~i~----------------~~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIG----------------DFDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEET----------------TTEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEEC----------------CeeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 6899998 5799999999999999999999999999999999997
No 22
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=98.94 E-value=7.9e-10 Score=86.69 Aligned_cols=44 Identities=55% Similarity=0.857 Sum_probs=40.1
Q ss_pred EEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeeccCCCeEEEE
Q 003144 735 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (844)
Q Consensus 735 VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~~kgv~RI~ 794 (844)
+|++.|+ +++.++|+||||+||++||.|+|++.++.+.+++||+
T Consensus 1 vriv~i~----------------~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIG----------------DFDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEEC----------------CEEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 5888888 5789999999999999999999999999888889985
No 23
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=98.94 E-value=1.3e-09 Score=127.90 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=70.2
Q ss_pred cCceEeeccC-cccccccccccEEEEeeecc----CCCeEEEEEEeChHHHHHHHHHHHHHHHHHHhhccCcchHHHhhh
Q 003144 757 LSISAELCGG-THLSNTREAEAFALLSEEGI----AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCS 831 (844)
Q Consensus 757 ~~~~~elCgG-THV~nTgeIg~fkI~~~s~~----~kgv~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~ 831 (844)
||..+++|+| |||+|||.|+.|+|++.++. ++.++||++++ +...+.++++++.++++.++||++||++++
T Consensus 73 ~~~~~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~----f~~~~~l~~~~~~~eea~~rdHr~lg~~l~ 148 (545)
T PRK14799 73 KGNKVSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVA----FETEEQLKDYLTWLEKAEETDHRLIGEKLD 148 (545)
T ss_pred ccCceeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEee----cCCHHHHHHHHHHHHhcccCCHHHHHHHcC
Confidence 5778999999 99999999999999999986 46799999995 557899999999999999999999999999
Q ss_pred ccccc
Q 003144 832 SGYFS 836 (844)
Q Consensus 832 ~f~f~ 836 (844)
+|.|+
T Consensus 149 lf~~~ 153 (545)
T PRK14799 149 LFSFH 153 (545)
T ss_pred Ccccc
Confidence 99886
No 24
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=4e-08 Score=109.67 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=84.9
Q ss_pred HHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHhh
Q 003144 641 IAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCI 720 (844)
Q Consensus 641 ~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI~~nlpV~~~~~~~eEA~~~ 720 (844)
-..|||++|+|..|+.+.+|.+. ..|. ..++|||+|+ + ..++.++
T Consensus 67 ~vfwhssahvlg~a~e~~~g~~l-c~Gp-p~~~gf~yd~-~-~~i~~~d------------------------------- 111 (560)
T KOG1637|consen 67 DVFWHSSAHVLGEALEQEYGAHL-CIGP-PIEEGFYYDM-L-DEISSND------------------------------- 111 (560)
T ss_pred eeeeehhhhHhhHHHHHhcCeeE-eeCC-CCcCceehhh-h-ccccccc-------------------------------
Confidence 35899999999999999999764 5785 4589999986 3 2221111
Q ss_pred cCcccccCCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeeccCCCeEEEEEEeChH
Q 003144 721 NGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGL 800 (844)
Q Consensus 721 ~g~r~~fge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~~kgv~RI~~vtG~~ 800 (844)
||. | + ++||++||.|+.|+|++.++.= -.+-+++
T Consensus 112 ----------~~~------~---------------------e---~phi~~tg~ika~k~~~nss~y-----w~~~sfp- 145 (560)
T KOG1637|consen 112 ----------FPS------I---------------------E---APHIRHTGKIKAFKILKNSSAY-----WEGDSFP- 145 (560)
T ss_pred ----------ccc------c---------------------c---cccccccceeeeeeeeccchhh-----hccccCC-
Confidence 111 1 1 2899999999999999877650 0011443
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcchHHHhhhccccc
Q 003144 801 AYKAFEAACSLEKEVDDASKIEGSLLEKVCSSGYFS 836 (844)
Q Consensus 801 A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~f~f~ 836 (844)
..++++++++..+|+.++|||+||+++++|+|.
T Consensus 146 ---~~k~~k~~~~~~~Ea~~rdHRkig~~qeLfff~ 178 (560)
T KOG1637|consen 146 ---DPKQLKEWEKFQEEAKKRDHRKIGKEQELFFFH 178 (560)
T ss_pred ---CHHHHHHHHhhchhhhhhhhhhhhhhhhheeec
Confidence 677889999999999999999999999999998
No 25
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=95.96 E-value=0.021 Score=58.20 Aligned_cols=181 Identities=21% Similarity=0.203 Sum_probs=102.5
Q ss_pred HHHHHHHHHhhhhCCCeEecCCCcccCCCCC--------ccccc---ccccccccccc-cccCC--CCcccccccccccc
Q 003144 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--------LLFAN---AGMNQYKPIFL-GTADP--NTQLSKLTRACNTQ 126 (844)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~--------llf~n---AGm~qFkp~fl-G~~~p--~~p~~~~~r~~~~Q 126 (844)
+.+.+.+.++|.+.|+..+-++++++..+-. +.+.| ..+..+.|-.+ +.... .|-.....|+.-.+
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig 82 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIG 82 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEEc
Confidence 4678888999999999999999998742210 11111 11112222211 11100 00000124788899
Q ss_pred cccccCCCCCCCCCCCCCCCcchhhhhcccccccccc-----HHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCC
Q 003144 127 KCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYF-----KNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAP 201 (844)
Q Consensus 127 kCiR~gGkhnDld~VG~t~rHhTfFEMLGn~SFgdYf-----K~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~ 201 (844)
+|.|.. -..-+ .+|..-|.|+|-..+|... -.++...++++|. .+|++.+-.++. .
T Consensus 83 ~vfr~e-----~~~~~--~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~-~lg~~~~~~~~~--~--------- 143 (211)
T cd00768 83 PAFRNE-----GGRRG--LRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLR-ALGIKLDIVFVE--K--------- 143 (211)
T ss_pred ceeecC-----CCccc--cccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHH-HcCCCcceEEEe--c---------
Confidence 999962 11111 3577889999999999643 3678899999996 678743322210 0
Q ss_pred cHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccc------
Q 003144 202 DNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFN------ 275 (844)
Q Consensus 202 D~E~~~iW~~~~~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~------ 275 (844)
....||. +.+|+|.+|+++...+ |..||+++-....+
T Consensus 144 ---------------------~~~~~~~----~~~g~~~~i~~~~~~~------------~~~eig~~g~~~~~~~~~~~ 186 (211)
T cd00768 144 ---------------------TPGEFSP----GGAGPGFEIEVDHPEG------------RGLEIGSGGYRQDEQARAAD 186 (211)
T ss_pred ---------------------Cchhhcc----ccCCceEEEEEEccCC------------CeEEEeeceeecCchhHhhh
Confidence 0112332 5789999999975332 23455555433222
Q ss_pred ---cCCCCccccCCCCccccCchHHHH
Q 003144 276 ---RESDGSLKPLPAKHVDTGLGFERL 299 (844)
Q Consensus 276 ---r~~~g~l~~Lp~k~iDTGmGlERl 299 (844)
.+++++.. .| .+|=-|+|+||+
T Consensus 187 l~~~~~~~~~~-~p-~~~~~~~~~~R~ 211 (211)
T cd00768 187 LYFLDEALEYR-YP-PTIGFGLGLERL 211 (211)
T ss_pred hheeccccccc-Cc-eeecCccCccCC
Confidence 22334332 44 466667999995
No 26
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=94.58 E-value=0.51 Score=50.44 Aligned_cols=177 Identities=21% Similarity=0.264 Sum_probs=104.9
Q ss_pred CCCChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccc-cccccCCCCcccccccccccccccccC-C
Q 003144 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-G 133 (844)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~-flG~~~p~~p~~~~~r~~~~QkCiR~g-G 133 (844)
++|+-.+|-.+--+|..++|..++-++.+= + |--.|-|. |+..-.|. | -+++-+|+|.|.. |
T Consensus 2 ~~~~fQ~iI~~Lq~fWa~~GC~i~qPyD~E---------v--GAGT~~P~Tflr~Lgpe-p----w~vaYvqPsRRP~DG 65 (283)
T PRK09348 2 KKMTFQDIILTLQDYWADQGCVILQPYDME---------V--GAGTFHPATFLRALGPE-P----WNAAYVQPSRRPTDG 65 (283)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEECCcccc---------c--ccccCCHHHHHHhcCCC-c----cccccccCCCCCCCC
Confidence 358999999999999999999999877652 2 34477884 44433331 1 3779999999982 2
Q ss_pred CCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhcC
Q 003144 134 KHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 213 (844)
Q Consensus 134 khnDld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~~ 213 (844)
+.-+=+| --.||.=|..+=--|-.+ ..+.=.+-| +.+||||..
T Consensus 66 RYGeNPN---RLq~y~QfQVilKPsP~n-----iQelYL~SL-~~lGid~~~---------------------------- 108 (283)
T PRK09348 66 RYGENPN---RLQHYYQFQVILKPSPDN-----IQELYLGSL-EALGIDPLE---------------------------- 108 (283)
T ss_pred CcCCCch---hhhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc----------------------------
Confidence 2222111 234555555554444433 111112222 246666653
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccC
Q 003144 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTG 293 (844)
Q Consensus 214 ~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTG 293 (844)
|=+||- +|| ||-=--|--|===|+--| | +||=-. +=|.+- .| .++..-.+.-=
T Consensus 109 ---hDIRFV-EDn-WEsPTLGAwGlGWEVWld---G--------------MEITQF--TYFQQv-GG--i~~~pv~~EIT 161 (283)
T PRK09348 109 ---HDIRFV-EDN-WESPTLGAWGLGWEVWLD---G--------------MEVTQF--TYFQQV-GG--IECKPVTGEIT 161 (283)
T ss_pred ---cceeEe-ecC-CCCCcccccccceEEEEC---C--------------eeeeee--eeeeee-CC--eeccccceeee
Confidence 334442 444 543222555555666643 1 676533 333332 23 33445567778
Q ss_pred chHHHHHHHHhCCCCCccc
Q 003144 294 LGFERLTSILQNKMSNYDT 312 (844)
Q Consensus 294 mGlERl~~vlqg~~snydt 312 (844)
+||||||+.|||+.|+||.
T Consensus 162 YGLERiamylQ~vd~v~dl 180 (283)
T PRK09348 162 YGLERLAMYLQGVDNVYDL 180 (283)
T ss_pred hhHHHHHHHHhCCCceeee
Confidence 9999999999999999997
No 27
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=92.55 E-value=1.5 Score=47.17 Aligned_cols=175 Identities=19% Similarity=0.293 Sum_probs=101.0
Q ss_pred CChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccc-cccccCCCCcccccccccccccccccC-CCC
Q 003144 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKH 135 (844)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~-flG~~~p~~p~~~~~r~~~~QkCiR~g-Gkh 135 (844)
|+-.+|-.+--+|..++|..++-++.+= + |--.|-|. |+..-.|. | -+++-+|+|.|.. |+.
T Consensus 1 m~fQ~iI~~Lq~fWa~~GC~i~QPyD~E---------v--GAGT~hPaTflralgpe-p----w~vAYVqPsRRP~DGRY 64 (293)
T TIGR00388 1 QTFQGLILKLQEYWANQGCLIVQPYDME---------K--GAGTMHPMTFLRSLGPE-P----WAVAYVEPSRRPTDGRY 64 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCcccc---------c--ccccCCHHHHHHhcCCC-c----ceeccccCCCCCCCCCC
Confidence 4677888888999999999999877652 2 34477884 44443331 1 3789999999982 222
Q ss_pred CCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhcCCC
Q 003144 136 NDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPA 215 (844)
Q Consensus 136 nDld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~~~~ 215 (844)
-+ |--+ -.||.=|..+=--|-.+ ..+.=.+-| +.+||||..
T Consensus 65 Ge--NPNR-Lq~yyQfQVilKPsP~n-----iQelYL~SL-~~lGid~~~------------------------------ 105 (293)
T TIGR00388 65 GE--NPNR-LQHYYQFQVVIKPSPDN-----IQELYLDSL-RALGIDPTE------------------------------ 105 (293)
T ss_pred CC--Cchh-hhheeeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc------------------------------
Confidence 22 2222 34555555544444433 111111212 235666543
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCch
Q 003144 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (844)
Q Consensus 216 ~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTGmG 295 (844)
|=|||- +|| ||-=--|--|===|+--| | +||=- |+=|.+- .| + ++..-.+.-=+|
T Consensus 106 -hDIRFV-EDn-WEsPTLGAwGlGWEVWld---G--------------MEITQ--FTYFQQv-GG-i-~~~pv~~EITYG 160 (293)
T TIGR00388 106 -HDIRFV-EDN-WENPTLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQV-GG-L-ECKPVSVEITYG 160 (293)
T ss_pred -cCeeEe-ecC-CCCCcccccccccEEEEC---C--------------eeeee--eeeeeee-CC-e-eccccceeeehh
Confidence 334442 455 543222555545666643 1 67653 3333333 23 2 233345677799
Q ss_pred HHHHHHHHhCCCCCccc
Q 003144 296 FERLTSILQNKMSNYDT 312 (844)
Q Consensus 296 lERl~~vlqg~~snydt 312 (844)
|||||+.|||+.|.||.
T Consensus 161 LERiaMylQ~vd~v~dl 177 (293)
T TIGR00388 161 LERLAMYIQGVENVYDL 177 (293)
T ss_pred HHHHHHHHhCCCeeeee
Confidence 99999999999999996
No 28
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=92.00 E-value=1.3 Score=56.15 Aligned_cols=175 Identities=21% Similarity=0.315 Sum_probs=105.8
Q ss_pred CChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccc-cccccCCCCccccccccccccccccc-CCCC
Q 003144 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRA-GGKH 135 (844)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~-flG~~~p~~p~~~~~r~~~~QkCiR~-gGkh 135 (844)
|+-.+|-.+--+|..++|..++-++.+= + |--.|-|. |+..-.|. | -+++-+|+|.|. -|+.
T Consensus 5 ~~~q~~i~~l~~~w~~~gc~~~qp~~~e---------~--gagt~~p~t~~~~l~~~-~----~~~ayv~p~~rp~d~ry 68 (1000)
T PRK14908 5 LTMQDMLLALLRYWSEQGCIIHQGYDLE---------V--GAGTFNPATFLRVLGPE-P----WRVAYVEPSRRPDDGRY 68 (1000)
T ss_pred ccHHHHHHHHHHHHHHCCCEEECCcccc---------c--ccCcCCHHHHHhhcCCC-C----CcccccCCCCCCCCCCc
Confidence 7999999999999999999999877652 2 34477784 44433331 1 367999999998 2222
Q ss_pred CCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhcCCC
Q 003144 136 NDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPA 215 (844)
Q Consensus 136 nDld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~~~~ 215 (844)
-+ |-- --.||+=|..+=--|-++ ..+.=.+-| +.+|||+..=
T Consensus 69 g~--npn-rl~~~~q~qvi~kp~p~~-----~q~~yl~sl-~~~gi~~~~~----------------------------- 110 (1000)
T PRK14908 69 GQ--NPN-RLQTYTQFQVILKPVPGN-----PQELYLESL-KAIGIDLRDH----------------------------- 110 (1000)
T ss_pred CC--Cch-hhhhheeeEEEECCCCcc-----HHHHHHHHH-HHcCCCcccc-----------------------------
Confidence 22 211 235666677665555554 111111222 2467776532
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCch
Q 003144 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (844)
Q Consensus 216 ~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTGmG 295 (844)
=++| .+|| ||-=--|--|===|+-.| | +||=-.- =|.+ ..| .++..-.+.-=+|
T Consensus 111 --dirf-ved~-we~p~lga~glgwevw~~---g--------------meitqft--yfqq-~gg--~~~~~~~~eityg 164 (1000)
T PRK14908 111 --DIRF-VHDD-WENPTIGAWGLGWEVWLD---G--------------MEITQFT--YFQQ-AGG--KPLDPISGEITYG 164 (1000)
T ss_pred --ceeE-eecC-CCCCcccccccccEEEEC---C--------------eeeeeee--eehh-cCC--eeccccceeeecc
Confidence 2333 2455 543222555555666543 1 6765333 2333 233 3355556777899
Q ss_pred HHHHHHHHhCCCCCccc
Q 003144 296 FERLTSILQNKMSNYDT 312 (844)
Q Consensus 296 lERl~~vlqg~~snydt 312 (844)
||||++.|||+.|.||.
T Consensus 165 ler~~m~~q~~~~~~~~ 181 (1000)
T PRK14908 165 IERIAMYLQKVNHFKDI 181 (1000)
T ss_pred HHHHHHHHhCCCeeeee
Confidence 99999999999999986
No 29
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=91.30 E-value=2.6 Score=45.20 Aligned_cols=173 Identities=21% Similarity=0.301 Sum_probs=99.4
Q ss_pred hHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccc-cccccCCCCccccccccccccccccc-CCCCCC
Q 003144 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRA-GGKHND 137 (844)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~-flG~~~p~~p~~~~~r~~~~QkCiR~-gGkhnD 137 (844)
-.+|-.+--+|..++|..++-++.+= + |--.|-|. |+..-.|. | -+++-+|+|.|. -|+.-+
T Consensus 2 fQ~iI~~Lq~fW~~~GC~i~qPyD~E---------v--GAGT~hPaTflr~Lgpe-p----w~vAYVqPsrRP~DGRYGe 65 (279)
T cd00733 2 FQDLILKLQKFWASQGCLIIQPYDME---------V--GAGTFHPATFLRALGPE-P----WNVAYVEPSRRPTDGRYGE 65 (279)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcccc---------c--ccccCCHHHHHHhcCCC-c----ceeccccCCCCCCCCCcCC
Confidence 35667777899999999998877652 2 34477784 44443331 1 378999999998 222222
Q ss_pred CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhcCCCCC
Q 003144 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 217 (844)
Q Consensus 138 ld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~~~~~~ 217 (844)
=+| --.||.=|..+=--|-.+ ..+.=.+-| +.+||||.. |
T Consensus 66 NPN---RLq~y~QfQViiKPsP~n-----iQelYL~SL-~~lGid~~~-------------------------------h 105 (279)
T cd00733 66 NPN---RLQHYYQFQVIIKPSPDN-----IQELYLESL-EALGINPKE-------------------------------H 105 (279)
T ss_pred Cch---hhhhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------------c
Confidence 111 234555555544444433 111222222 245666543 3
Q ss_pred cccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCchHH
Q 003144 218 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (844)
Q Consensus 218 I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTGmGlE 297 (844)
=++|- +|| ||-=--|--|===|+--| | +||=-. +=|.+- .| .++..-.+.-=+|||
T Consensus 106 DIRFV-EDn-WEsPTLGAwGLGWEVWld---G--------------MEITQF--TYFQQv-GG--i~~~pv~~EiTYGLE 161 (279)
T cd00733 106 DIRFV-EDN-WESPTLGAWGLGWEVWLD---G--------------MEVTQF--TYFQQV-GG--IPCKPISVEITYGLE 161 (279)
T ss_pred CeeEe-ecC-CCCCcccccccccEEEEC---C--------------eeeeee--eeeeee-CC--eeccccceeeehhHH
Confidence 34442 444 553222555555666643 1 677533 333332 23 234445667789999
Q ss_pred HHHHHHhCCCCCccc
Q 003144 298 RLTSILQNKMSNYDT 312 (844)
Q Consensus 298 Rl~~vlqg~~snydt 312 (844)
|||+.|||+.|+||.
T Consensus 162 RiamylQ~vd~v~dl 176 (279)
T cd00733 162 RIAMYLQGVDNVYDI 176 (279)
T ss_pred HHHHHHhCCCceecc
Confidence 999999999999996
No 30
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=90.30 E-value=2.1 Score=45.67 Aligned_cols=172 Identities=21% Similarity=0.358 Sum_probs=98.2
Q ss_pred CCCCChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccc-cccccCCCCcccccccccccccccccC-
Q 003144 55 VVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG- 132 (844)
Q Consensus 55 ~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~-flG~~~p~~p~~~~~r~~~~QkCiR~g- 132 (844)
.++|+...|--+--+|..++|..++-++-+= + |--.|-|+ ||..-.|. | =.++-+|+|-|.+
T Consensus 2 ~~~~~fQ~~IltLq~yW~~qGC~i~QpyD~e---------v--GAGT~hPaTfLralGpe-P----w~aAYVqPSRRP~D 65 (298)
T COG0752 2 NKKLTFQGLILTLQNYWAEQGCTILQPYDME---------V--GAGTFHPATFLRALGPE-P----WNAAYVQPSRRPTD 65 (298)
T ss_pred CccccHHHHHHHHHHHHHHcCCEEecccccc---------c--ccCcCChHHHHHhcCCC-c----cceeeeccCCCCCC
Confidence 3468899999999999999999998766541 3 44478896 55444441 1 2578899999983
Q ss_pred CCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHh-
Q 003144 133 GKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK- 211 (844)
Q Consensus 133 GkhnDld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~- 211 (844)
|+--+ |--+ -.||-=|.. +++=+|+++ -++.++
T Consensus 66 GRYGe--nPNR-lq~yyQfQV------------------------ilKPsP~Ni-------------------QeLYL~S 99 (298)
T COG0752 66 GRYGE--NPNR-LQHYYQFQV------------------------IIKPSPDNI-------------------QELYLGS 99 (298)
T ss_pred CCCCC--Cchh-hhhheeEEE------------------------EecCCCccH-------------------HHHHHHH
Confidence 11111 1111 122222222 123333322 112111
Q ss_pred ---c--CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCC
Q 003144 212 ---F--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLP 286 (844)
Q Consensus 212 ---~--~~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp 286 (844)
+ =|.+|=|||- +|| ||-=.-|--|--=|+--| | +||=- |+=|.+. .| +. +.
T Consensus 100 L~~lGid~~~HDIRFV-EDn-WE~PTlGawGlGWEVWld---G--------------MEvTQ--FTYFQQv-GG-ie-c~ 155 (298)
T COG0752 100 LEALGIDPLEHDIRFV-EDN-WENPTLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQV-GG-LE-CK 155 (298)
T ss_pred HHHcCCChhhcceeee-ccC-CCCCcccccccceeEEEc---C--------------eeeee--eehhhhh-CC-ee-cc
Confidence 1 2334555663 455 654333666666677654 1 56643 3333332 33 22 33
Q ss_pred CCccccCchHHHHHHHHhCCCCCccc
Q 003144 287 AKHVDTGLGFERLTSILQNKMSNYDT 312 (844)
Q Consensus 287 ~k~iDTGmGlERl~~vlqg~~snydt 312 (844)
--.+.--+||||||+.+||+.|+||-
T Consensus 156 pV~~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 156 PVSGEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred ceeeeeehhHHHHHHHHhCccceeEE
Confidence 33556679999999999999999996
No 31
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=90.18 E-value=0.52 Score=51.45 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhhhCCCeEecCCCccc-CCCC-Cccccccccccc---ccccccccCCC---C-ccccccccccccccccc
Q 003144 61 TKVRDTFFKFFEDKNHVNWKSSPVVP-VNDP-TLLFANAGMNQY---KPIFLGTADPN---T-QLSKLTRACNTQKCIRA 131 (844)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp-~~d~-~llf~nAGm~qF---kp~flG~~~p~---~-p~~~~~r~~~~QkCiR~ 131 (844)
++|-+.+-+||.++|-..|..--+.+ ..++ .-.|.-. .| ++++|-+.+-- - =.+.+.|+-...+|.|.
T Consensus 5 s~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~---~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~ 81 (269)
T cd00669 5 SKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVK---YNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFRN 81 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEee---ecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEecceeC
Confidence 57888999999999998885444432 1111 1112110 01 22233221100 0 00124567777899995
Q ss_pred CCCCCCCCCCCCCCCcchhhhhcccc-ccccccHHHHHHHHHHHccc
Q 003144 132 GGKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLTK 177 (844)
Q Consensus 132 gGkhnDld~VG~t~rHhTfFEMLGn~-SFgdYfK~eai~~awe~Lt~ 177 (844)
| +.|.||..=|-||--- +|.|| +|.++.+=+++..
T Consensus 82 -----e----~~~~~hl~EF~~le~e~~~~~~--~dvm~~~e~lv~~ 117 (269)
T cd00669 82 -----E----DLRARHQPEFTMMDLEMAFADY--EDVIELTERLVRH 117 (269)
T ss_pred -----C----CCCCCcccceeEEEEEEecCCH--HHHHHHHHHHHHH
Confidence 4 3477999988887543 66676 5566665555443
No 32
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=84.83 E-value=2.9 Score=45.06 Aligned_cols=171 Identities=23% Similarity=0.350 Sum_probs=85.5
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccc-cccccCCCCccccccccccccccccc-CCCCCCCC
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRA-GGKHNDLD 139 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~-flG~~~p~~p~~~~~r~~~~QkCiR~-gGkhnDld 139 (844)
+|-.+--+|..++|..++.++.+= + |--.|-|. |+..-.|. | -+++-+|+|.|. -|+.-+
T Consensus 3 ~iI~~Lq~fW~~~GC~i~qPyD~e---------v--GAGT~~P~Tflr~Lgpe-p----w~vaYVqPsrRP~DGRYGe-- 64 (284)
T PF02091_consen 3 DIILTLQKFWADQGCIILQPYDIE---------V--GAGTFHPATFLRALGPE-P----WNVAYVQPSRRPTDGRYGE-- 64 (284)
T ss_dssp HHHHHHHHHHHCTT-EE----SS-------------SSGGGSHHHHTTTSSSS------EEEEEEEEEE-GGG--TTT--
T ss_pred HHHHHHHHHHHHCCCEEECCcccc---------c--ccccCCHHHHHHhcCCC-C----ccccccccCCCCCCCccCC--
Confidence 555667789999999999877652 2 44477774 45444442 1 478999999998 222222
Q ss_pred CCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhcCCCCCcc
Q 003144 140 DVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVL 219 (844)
Q Consensus 140 ~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~~~~~~I~ 219 (844)
|--+ -.||.=|..+=--|-++ ..+.=.+-| +.+||++.. |=+
T Consensus 65 NPNR-Lq~y~QfQVilKPsP~n-----iq~lYL~SL-~~lGId~~~-------------------------------hDI 106 (284)
T PF02091_consen 65 NPNR-LQHYYQFQVILKPSPDN-----IQELYLESL-EALGIDPKE-------------------------------HDI 106 (284)
T ss_dssp SSS---SEEEEEEEEEES--TT-----HHHHHHHHH-HHCT--CCC-------------------------------S-E
T ss_pred CchH-hhhhheeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------------cce
Confidence 2222 34555455544444432 112222222 246666553 333
Q ss_pred cCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCchHHHH
Q 003144 220 PFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERL 299 (844)
Q Consensus 220 ~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTGmGlERl 299 (844)
+| .+|| ||-=--|--|===|+--| | +||=-.-+ |.+- .| .++..-.+.-=+|||||
T Consensus 107 RF-VEDn-WEsPtLGAwGlGWEVWld---G--------------MEITQfTY--FQQv-GG--i~~~pv~~EITYGLERi 162 (284)
T PF02091_consen 107 RF-VEDN-WESPTLGAWGLGWEVWLD---G--------------MEITQFTY--FQQV-GG--IDCKPVSVEITYGLERI 162 (284)
T ss_dssp EE-EEE--EEETTTTEEEEEEEEEET---T--------------CEEEEEEE--EEEE-TT--EE-SS--EEEEEEHHHH
T ss_pred eE-eecC-CCCCcccccccccEEEEC---C--------------EEEEEeee--eeee-CC--ccccccceehhhhHHHH
Confidence 44 2455 543212444544566543 1 67754333 3332 23 33555567778999999
Q ss_pred HHHHhCCCCCccc
Q 003144 300 TSILQNKMSNYDT 312 (844)
Q Consensus 300 ~~vlqg~~snydt 312 (844)
|+.|||+.|.||.
T Consensus 163 amylQ~vdnv~dl 175 (284)
T PF02091_consen 163 AMYLQGVDNVYDL 175 (284)
T ss_dssp HHHHCT-SSGGGS
T ss_pred HHHHhCCCeeEee
Confidence 9999999999997
No 33
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=83.48 E-value=5.5 Score=41.70 Aligned_cols=108 Identities=20% Similarity=0.229 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhhhCCCeEecCCCcccCCCCCccccccc--------ccccc----------------------ccccccc
Q 003144 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG--------MNQYK----------------------PIFLGTA 110 (844)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAG--------m~qFk----------------------p~flG~~ 110 (844)
..|.+.+.+.|++.|...|....+.|.+ +|...| |..|. .++....
T Consensus 6 ~~l~~~~~~~~~~~G~~ei~~P~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 6 RALERFLDDRMAEYGYQEILFPFLAPTV----LFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEcCHH----HHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 5688888999999999888777776632 111111 22221 1111111
Q ss_pred CCCCcccccccccccccccccCCCCCCCCCC-CCCCCcchhhhhcccccccc-----ccHHHHHHHHHHHcccccCCC
Q 003144 111 DPNTQLSKLTRACNTQKCIRAGGKHNDLDDV-GKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLTKVYRLP 182 (844)
Q Consensus 111 ~p~~p~~~~~r~~~~QkCiR~gGkhnDld~V-G~t~rHhTfFEMLGn~SFgd-----YfK~eai~~awe~Lt~~l~l~ 182 (844)
.+..++ .-|.+...+|.|. ....- |. .|-+- |.|.|-..||+ ..-.|.++.++++|. .+|++
T Consensus 82 ~~~~~l--P~r~~~~g~~fR~-----E~~~~~gl-~R~re-F~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~-~lgl~ 149 (235)
T cd00670 82 LSYRAL--PLRLDQIGPCFRH-----EPSGRRGL-MRVRE-FRQVEYVVFGEPEEAEEERREWLELAEEIAR-ELGLP 149 (235)
T ss_pred ccchhc--CeeeeeecccccC-----CCCCCCCC-hhhee-eeeceEEEEcCHHHHHHHHHHHHHHHHHHHH-HcCCc
Confidence 110111 1378899999995 43332 22 24444 78999999985 345678999999996 57885
No 34
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=82.30 E-value=0.28 Score=58.76 Aligned_cols=146 Identities=23% Similarity=0.221 Sum_probs=88.5
Q ss_pred hhhhhccccccccccHHHHHHHHHHHcc---------------cccCCCCCceEEEEeC--CCCcCCCCCcHHHHH-HHH
Q 003144 149 TFFEMLGNWSFGDYFKNEAIEWAWELLT---------------KVYRLPADRLYATYFG--GDEKAGLAPDNEARD-IWL 210 (844)
Q Consensus 149 TfFEMLGn~SFgdYfK~eai~~awe~Lt---------------~~l~l~~~rL~vT~~~--gd~~~gl~~D~E~~~-iW~ 210 (844)
.+|--.|---|-.||-.....--..=++ +..|.++-.+ |+|+ |.-.-|-.--+||-. .|.
T Consensus 31 llf~~Agm~~fkp~f~g~~~~p~~~r~~~~Q~CiR~~GkhnDld~VG~t~rH~--T~FEMlGn~sfgdYfK~eai~~awe 108 (552)
T PF01411_consen 31 LLFTNAGMNQFKPYFLGGEVPPPANRLVSSQKCIRTGGKHNDLDNVGRTGRHH--TFFEMLGNFSFGDYFKEEAIEYAWE 108 (552)
T ss_dssp BSS--SGGGGGCCCCTTSSS--SSSCEEEEEEEE-EETTEECGGGTTTSSS----SEEEEEEEEEECSS-HHHHHHHHHH
T ss_pred ceeeHhhHHHHHHHhcCCCCCCCCCcccccceeeccCCCcchhhhcCCCceEe--eehhhccccccccccHHHHHHHHHH
Confidence 4566677777777775544111111111 1245665555 7775 222222222345444 443
Q ss_pred h---c--CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeec---cccccCCCCcc
Q 003144 211 K---F--LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVF---IQFNRESDGSL 282 (844)
Q Consensus 211 ~---~--~~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVF---mq~~r~~~g~l 282 (844)
= . +|++||.- ....|. |.||+|=|.++ |+ .|.-+++| |+|....++ .
T Consensus 109 ~lt~~l~i~~~~l~v---t~~~~d----~ea~~~w~~~~---g~--------------~~~~i~~~~~~~nfw~~g~~-g 163 (552)
T PF01411_consen 109 FLTEVLGIPPDRLYV---TVFEWD----GEAGEIWEKIV---GG--------------PEERILVFGKKDNFWEMGDT-G 163 (552)
T ss_dssp HHHCTTT--GGGEEE---EEECCE----CCCCCCCCECC---TT--------------ECCCEEEE-CCEEEEESSTS-E
T ss_pred HHHhhcCCChHhEEE---EEeCCc----hhHHHHHHHhc---CC--------------CHHHeEecCCCCceEECCCC-C
Confidence 2 2 89988865 333342 48999998873 22 68888999 999976654 6
Q ss_pred ccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHH
Q 003144 283 KPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAI 322 (844)
Q Consensus 283 ~~Lp~k~iDTGmGlERl~~vlqg~~snydtd~f~pli~~i 322 (844)
...|..-||+|+|+||..|..++.++.|+. .|..|.+.+
T Consensus 164 pcgpcseI~~d~G~e~~~~~~~~~~~~~~~-~~~eiwn~v 202 (552)
T PF01411_consen 164 PCGPCSEIFYDRGEERGCWDSQGTPTCDDD-RFLEIWNLV 202 (552)
T ss_dssp EEEEEEEEEEEEECCCHHHHHHSTSSHHHH-HECCCCCCC
T ss_pred CCCCCEEEEECCCcccCccccccccccccc-cHHHHHHHH
Confidence 889999999999999999999999998765 566554433
No 35
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=79.45 E-value=2.3 Score=47.88 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHhhhhCCCeEecCCCccc
Q 003144 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVP 86 (844)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp 86 (844)
-...++++.-.++|..-|.+.+.+..|..
T Consensus 108 HPl~~~~~~Ir~if~~mGF~ev~gpeIes 136 (339)
T PRK00488 108 HPITQTIEEIEDIFVGMGFEVAEGPEIET 136 (339)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCcccc
Confidence 44667777777778888999988777754
No 36
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=79.36 E-value=19 Score=42.34 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhhCCCeEecCCCcccC-CCCCc-cccc-ccc-----ccc-ccccccccCC---CCcccccccccccccc
Q 003144 61 TKVRDTFFKFFEDKNHVNWKSSPVVPV-NDPTL-LFAN-AGM-----NQY-KPIFLGTADP---NTQLSKLTRACNTQKC 128 (844)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~-~d~~l-lf~n-AGm-----~qF-kp~flG~~~p---~~p~~~~~r~~~~QkC 128 (844)
++|-+.+-+||.++|...|..--+.+. .+... +|.- +-+ +-| ++++|-+.+- .--.+.+.|+-..-+|
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~ 216 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPT 216 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeec
Confidence 466677889999999888855444331 11111 1211 101 111 3344433210 0000125677888899
Q ss_pred cccCCCCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHHc
Q 003144 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELL 175 (844)
Q Consensus 129 iR~gGkhnDld~VG~t~rHhTfFEMLGn-~SFgdYfK~eai~~awe~L 175 (844)
.|.. + ..|.||..=|-||-- .+|.|| +|.+..+=+++
T Consensus 217 FR~E----~----~~t~rHl~EFt~lE~e~~~~~~--~~~m~~~e~li 254 (450)
T PRK03932 217 FRAE----N----SNTRRHLAEFWMIEPEMAFADL--EDNMDLAEEML 254 (450)
T ss_pred cccC----C----CCCccccccccccceEEeccCH--HHHHHHHHHHH
Confidence 9972 2 235799877778765 367776 55555544444
No 37
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=76.56 E-value=18 Score=42.30 Aligned_cols=99 Identities=15% Similarity=0.244 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccCCCCCccccccccccc------ccccccccCCC----Cccccccccccccccccc
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPN----TQLSKLTRACNTQKCIRA 131 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qF------kp~flG~~~p~----~p~~~~~r~~~~QkCiR~ 131 (844)
.|-+.+-+||.++|-..|..--|++. ++ -.|-..| ++.+|-+.+-- --.+.+.|+-...+|.|.
T Consensus 138 ~i~~~iR~ff~~~gf~EV~TP~L~~~-~~-----eg~~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~ 211 (428)
T TIGR00458 138 GVLESVREFLAEEGFIEVHTPKLVAS-AT-----EGGTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRA 211 (428)
T ss_pred HHHHHHHHHHHHCCCEEEeCCceecC-CC-----CCCcceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEeccccc
Confidence 55567788999999888854444431 10 0112222 33444333110 000224677888999997
Q ss_pred CCCCCCCCCCCCCCCcchhhhhcccc-ccccccHHHHHHHHHHHcc
Q 003144 132 GGKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (844)
Q Consensus 132 gGkhnDld~VG~t~rHhTfFEMLGn~-SFgdYfK~eai~~awe~Lt 176 (844)
. +. .|.||.+=|-||--. +|.|| ++.++.+=+++.
T Consensus 212 E-------~~-~t~rHl~EFt~lE~e~a~~~~--~dlm~~~e~li~ 247 (428)
T TIGR00458 212 E-------EH-NTHRHLNEATSIDIEMAFEDH--HDVMDILEELVV 247 (428)
T ss_pred C-------CC-CCccchheeeEeeeeeccCCH--HHHHHHHHHHHH
Confidence 2 22 356999888888654 77787 666666655554
No 38
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=71.52 E-value=4 Score=38.88 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=20.5
Q ss_pred HHHHHHcccccCCCCCceEEEEeC
Q 003144 169 EWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 169 ~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
.---++|++.||||++|+||.|+.
T Consensus 79 ~~i~~~l~~~LgIp~dRiYI~f~d 102 (113)
T PTZ00450 79 PRITAAITKECGIPAERIYVFYYS 102 (113)
T ss_pred HHHHHHHHHHcCCCcccEEEEEEc
Confidence 445688999999999999999973
No 39
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=65.41 E-value=6 Score=37.70 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.1
Q ss_pred HHHHHcccccCCCCCceEEEEeC
Q 003144 170 WAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 170 ~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
---|+|.+.|+|||+|+|++||.
T Consensus 79 ~l~~il~~~L~l~~~rv~I~f~d 101 (115)
T KOG1759|consen 79 ALTEILEKELSLDPDRVYIKFYD 101 (115)
T ss_pred HHHHHHHHHhCCCCCeEEEEEec
Confidence 34588999999999999999984
No 40
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=65.11 E-value=7 Score=46.43 Aligned_cols=99 Identities=16% Similarity=0.305 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccCCCCCccccccccccc--------ccccccccCCC---Cc-cccccccccccccc
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY--------KPIFLGTADPN---TQ-LSKLTRACNTQKCI 129 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qF--------kp~flG~~~p~---~p-~~~~~r~~~~QkCi 129 (844)
.|-+.+-+||.++|-..|..--+.+.. ..|..-+| ++.||-+++-- -- .+.+.|+-..-||.
T Consensus 177 ~i~~~iR~fl~~~gF~EVeTP~L~~~~------gga~a~pF~t~~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~F 250 (496)
T TIGR00499 177 KIIKAIRRFLDDRGFIEVETPMLQVIP------GGANARPFITHHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNF 250 (496)
T ss_pred HHHHHHHHHHHHCcCEEEeCCeeecCC------CCccceeEEeecccCCCceEEecCHHHHHHHHHhCCCCceEEEecce
Confidence 556677899999998888544443321 11222223 33344443210 00 01246777788999
Q ss_pred ccCCCCCCCCCCCCCCCcchhhhhccc-ccccccc-----HHHHHHHHHHHc
Q 003144 130 RAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYF-----KNEAIEWAWELL 175 (844)
Q Consensus 130 R~gGkhnDld~VG~t~rHhTfFEMLGn-~SFgdYf-----K~eai~~awe~L 175 (844)
|.. ++ ++||..=|-||-- ++|.||- -++-|..++.-+
T Consensus 251 RnE-------~~--~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l 293 (496)
T TIGR00499 251 RNE-------GV--DTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQEL 293 (496)
T ss_pred ecC-------CC--CCcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 962 23 4599999999876 4777872 344444444433
No 41
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.19 E-value=3.4 Score=27.46 Aligned_cols=9 Identities=56% Similarity=1.678 Sum_probs=7.6
Q ss_pred CCCCcCcee
Q 003144 233 TGPCGPCSE 241 (844)
Q Consensus 233 ~GpcGPcsE 241 (844)
.|||+||++
T Consensus 12 ~G~C~pC~~ 20 (20)
T PF01422_consen 12 PGPCPPCPQ 20 (20)
T ss_pred CCcCCCCCC
Confidence 599999974
No 42
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=62.00 E-value=5.7 Score=45.87 Aligned_cols=81 Identities=21% Similarity=0.260 Sum_probs=55.7
Q ss_pred ccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcccccchhhhh----hhhhhhe---eeee
Q 003144 289 HVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVV----ADHIRTL---SFAI 361 (844)
Q Consensus 289 ~iDTGmGlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~a~rvi----aDH~R~~---~~~i 361 (844)
.|+||-||=-+-++-.|..+.|-..+|.|+.+...+++.+.+.+.++..-. +..+-..++ ||=+-+- +=+|
T Consensus 72 digtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn--krStev~vg~~~RadI~v~e~fdtEli 149 (636)
T KOG1501|consen 72 DIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVIN--KRSTEVKVGGSSRADIAVREDFDTELI 149 (636)
T ss_pred EccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeec--cccceeeecCcchhhhhhHhhhhhhhh
Confidence 588999999999999999999999999999999999877655554332110 111111222 3333222 3478
Q ss_pred cCCCccCCCC
Q 003144 362 ADGSCPGNEG 371 (844)
Q Consensus 362 ~DG~~Psn~g 371 (844)
..|++||=+.
T Consensus 150 geGalps~qh 159 (636)
T KOG1501|consen 150 GEGALPSLQH 159 (636)
T ss_pred ccccchhHHH
Confidence 8999998553
No 43
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=57.38 E-value=9.9 Score=35.93 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-.+---++|.+.||+||+|+||.+.+
T Consensus 74 k~~l~~~i~~~l~~~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 74 NSSIAAAITKILASHLKVKSERVYIEFKD 102 (116)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55666667788999999999999999875
No 44
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=52.09 E-value=27 Score=41.50 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=72.2
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCc-chhhhhccccccc-cccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcC
Q 003144 120 TRACNTQKCIRAGGKHNDLDDVGKDTYH-HTFFEMLGNWSFG-DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKA 197 (844)
Q Consensus 120 ~r~~~~QkCiR~gGkhnDld~VG~t~rH-hTfFEMLGn~SFg-dYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~ 197 (844)
.|..+..+|.| ||=.+ ..| ..|..|=| +-+| +.=-.+-+..+-+|+.. +|+..=|+--+||.
T Consensus 358 ~k~fsigrVfR-----~d~~D----atH~~eFhQ~Eg-~vi~~~~s~~~L~~~l~~f~~~-lG~~~~RfrP~yfP----- 421 (494)
T PTZ00326 358 KKYFSIDRVFR-----NETLD----ATHLAEFHQVEG-FVIDRNLTLGDLIGTIREFFRR-IGITKLRFKPAFNP----- 421 (494)
T ss_pred ceEEecCCEec-----CCCCC----CCcCceeEEEEE-EEEeCCCCHHHHHHHHHHHHHh-cCCCceEEecCCCC-----
Confidence 47788889999 56322 344 44444422 2222 12124677888888864 58855566556653
Q ss_pred CCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeecccccc-
Q 003144 198 GLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR- 276 (844)
Q Consensus 198 gl~~D~E~~~iW~~~~~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r- 276 (844)
| | =|+-||+..+.+ +..||||.|.=.++-+-
T Consensus 422 -----------------------f-----------T---EPS~Ev~v~~~~-----------~gkWIEIgg~Gm~rpevL 453 (494)
T PTZ00326 422 -----------------------Y-----------T---EPSMEIFGYHPG-----------LKKWVEVGNSGIFRPEML 453 (494)
T ss_pred -----------------------C-----------C---CCeeEEEEEecC-----------CCcEEEEeCcCccCHHHH
Confidence 1 2 256888865422 13589998875554221
Q ss_pred CCCCccccCCCCccccCchHHHHHHHHhCCCC
Q 003144 277 ESDGSLKPLPAKHVDTGLGFERLTSILQNKMS 308 (844)
Q Consensus 277 ~~~g~l~~Lp~k~iDTGmGlERl~~vlqg~~s 308 (844)
..-| + |=+..++==||||||+|++.-|.+.
T Consensus 454 ~~~G-i-~~~~~~~A~GlGleRlaMi~ygi~D 483 (494)
T PTZ00326 454 RPMG-F-PEDVTVIAWGLSLERPTMIKYGIKN 483 (494)
T ss_pred HhcC-C-CCcceEEEEEecHHHHHHHHhCCcH
Confidence 1112 2 1122357779999999999988654
No 45
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=49.69 E-value=17 Score=40.96 Aligned_cols=177 Identities=21% Similarity=0.277 Sum_probs=94.5
Q ss_pred CChHHHHHHHHHhhhhCCCeEecCCCcc-----------c-----CCCCCccccccccccccccccccc-----------
Q 003144 58 WPATKVRDTFFKFFEDKNHVNWKSSPVV-----------P-----VNDPTLLFANAGMNQYKPIFLGTA----------- 110 (844)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslv-----------p-----~~d~~llf~nAGm~qFkp~flG~~----------- 110 (844)
-...++.+...++|.+-|-+.+...-|- | |+-.+.++.+..-. | ..|-+-
T Consensus 111 Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~--~-~lLRTHTs~vq~R~l~~ 187 (335)
T COG0016 111 HPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDRE--K-LLLRTHTSPVQARTLAE 187 (335)
T ss_pred ChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCC--c-eeecccCcHhhHHHHHh
Confidence 4577888888888888999888755332 1 33334444444221 1 122110
Q ss_pred CCCCcccccccccccccccccCCCCCCCCCCCCCCCc-chhhhhcc-----ccccccccHHHHHHHHHHHcccccCCC-C
Q 003144 111 DPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYH-HTFFEMLG-----NWSFGDYFKNEAIEWAWELLTKVYRLP-A 183 (844)
Q Consensus 111 ~p~~p~~~~~r~~~~QkCiR~gGkhnDld~VG~t~rH-hTfFEMLG-----n~SFgdYfK~eai~~awe~Lt~~l~l~-~ 183 (844)
.++.| -|+.+..+|.| ||-.+ ..| +-|..+=| |.||.| -.-.--+|+.+-+|.+ +
T Consensus 188 ~~~~P----~k~~~~grvyR-----~D~~D----aTHs~~FhQiEGlvvd~~~s~~~-----Lkg~L~~f~~~~fg~~~~ 249 (335)
T COG0016 188 NAKIP----IKIFSPGRVYR-----NDTVD----ATHSPEFHQIEGLVVDKNISFAD-----LKGTLEEFAKKFFGEDVK 249 (335)
T ss_pred CCCCC----ceEecccceec-----CCCCC----cccchheeeeEEEEEeCCccHHH-----HHHHHHHHHHHhcCCCcc
Confidence 01113 48899999999 58433 445 55555544 555543 2223335555555555 4
Q ss_pred CceEEEEeCCCCcCCCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCce
Q 003144 184 DRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTC 263 (844)
Q Consensus 184 ~rL~vT~~~gd~~~gl~~D~E~~~iW~~~~~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~ 263 (844)
=|.--+||. | | =|+-|+.....+ |..|
T Consensus 250 vRfrpsyFP-----------------------------------F----T---EPS~Evdv~~~~-----------~~~W 276 (335)
T COG0016 250 VRFRPSYFP-----------------------------------F----T---EPSAEVDVYCPG-----------CGGW 276 (335)
T ss_pred eEeecCCCC-----------------------------------C----C---CCeEEEEEEEcC-----------CCCE
Confidence 455555652 2 2 256787754321 1358
Q ss_pred EEEeeeeccccccCCCCccccCCCCccccCchHHHHHHHHhCCCC
Q 003144 264 IEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMS 308 (844)
Q Consensus 264 lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTGmGlERl~~vlqg~~s 308 (844)
|||.+.=-..-|--...-+.|-+-...==|||+||||++.-|.+.
T Consensus 277 lEi~G~Gmv~P~VL~~~G~~~~~~~GfAfGlGlERlAMLkygI~D 321 (335)
T COG0016 277 LEILGCGMVHPNVLEAVGIDPEEYSGFAFGLGLERLAMLKYGIPD 321 (335)
T ss_pred EEEecccccCHHHHHhcCCCCCcceEEEEeecHHHHHHHHhCCcH
Confidence 888854211111111111222222222569999999999988754
No 46
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=44.34 E-value=17 Score=34.39 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=17.5
Q ss_pred HHHHHcccccCCCCCceEEEEeC
Q 003144 170 WAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 170 ~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
---+||.+.||||++|+||.|+.
T Consensus 78 ~i~~~l~~~LgIp~~Riyi~f~d 100 (114)
T PF01187_consen 78 AITEFLEEELGIPPDRIYINFHD 100 (114)
T ss_dssp HHHHHHHHHHT--GGGEEEEEEE
T ss_pred HHHHHHHHHhCCCcCceEEEEEE
Confidence 34577889999999999999974
No 47
>smart00438 ZnF_NFX Repressor of transcription.
Probab=42.92 E-value=11 Score=26.82 Aligned_cols=11 Identities=45% Similarity=1.304 Sum_probs=8.9
Q ss_pred CCCCcCceeEE
Q 003144 233 TGPCGPCSEIH 243 (844)
Q Consensus 233 ~GpcGPcsEI~ 243 (844)
.|||+||.+..
T Consensus 12 ~G~C~pC~~~~ 22 (26)
T smart00438 12 PGPCPPCKQXX 22 (26)
T ss_pred CCcCcCccccc
Confidence 49999999654
No 48
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=42.81 E-value=12 Score=40.38 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHhhhhCCCeEecCCCcc
Q 003144 58 WPATKVRDTFFKFFEDKNHVNWKSSPVV 85 (844)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslv 85 (844)
-...++++.-.++|..-|...+..++|.
T Consensus 17 hp~~~~~~~i~~~~~~~Gf~e~~~~~v~ 44 (247)
T PF01409_consen 17 HPITKFIREIRDIFVGMGFQEVEGPEVE 44 (247)
T ss_dssp SHHHHHHHHHHHHHHCTTSEEESTTSEE
T ss_pred CHHHHHHHHHHHHHHHCCCeEeeCCeEE
Confidence 3477888888889999999999988873
No 49
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=37.62 E-value=37 Score=38.03 Aligned_cols=101 Identities=23% Similarity=0.393 Sum_probs=61.3
Q ss_pred hHHHHHHHHHhhhhCCCeEecCCCcccCCCCCccccccccccc------ccccccccCC---CCcccccccccccccccc
Q 003144 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADP---NTQLSKLTRACNTQKCIR 130 (844)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qF------kp~flG~~~p---~~p~~~~~r~~~~QkCiR 130 (844)
-+.|.+.+-+||.++|...|..-.+.+. +. .+|..+| +|.+|-+.+- .--+..+.|+-...+|.|
T Consensus 27 rs~i~~~ir~~f~~~gf~eV~TP~l~~~-~~-----e~~~~~f~~~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR 100 (322)
T cd00776 27 RSEVLRAFREFLRENGFTEVHTPKITST-DT-----EGGAELFKVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFR 100 (322)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceecC-CC-----CccCCccccccCCCcceecCCHHHHHHHHHHhhhhhEEeccccc
Confidence 4678889999999999998876556552 11 1344455 4445543321 000111467788899999
Q ss_pred cCCCCCCCCCCCCCCCcchhhhhcccc-ccc-cccHHHHHHHHHHHcc
Q 003144 131 AGGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DYFKNEAIEWAWELLT 176 (844)
Q Consensus 131 ~gGkhnDld~VG~t~rHhTfFEMLGn~-SFg-dYfK~eai~~awe~Lt 176 (844)
.. + ..+.||..=|-||.-. +|. || ++.++.+=++|.
T Consensus 101 ~E----~----~~~~rHl~EFtmlE~e~~~~~~~--~dlm~~~e~ll~ 138 (322)
T cd00776 101 AE----K----SNTRRHLSEFWMLEAEMAFIEDY--NEVMDLIEELIK 138 (322)
T ss_pred cC----C----CCcCCCcceeeccceeeeccCCH--HHHHHHHHHHHH
Confidence 72 1 2356998888888654 444 54 455555555543
No 50
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=37.15 E-value=30 Score=41.04 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=23.2
Q ss_pred CCCChHHHHHHHHHhhhhCCCeEecCCC
Q 003144 56 VEWPATKVRDTFFKFFEDKNHVNWKSSP 83 (844)
Q Consensus 56 ~~~~~~eiR~~Fl~fF~~~gH~~v~sss 83 (844)
..-...++|+.+.++|.+-|.+.++..|
T Consensus 219 ~~HPl~~~~~ei~~if~~mGF~e~~~g~ 246 (492)
T PLN02853 219 HLHPLLKVRQQFRKIFLQMGFEEMPTNN 246 (492)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEecCCC
Confidence 3456889999999999999999996443
No 51
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=32.25 E-value=57 Score=39.46 Aligned_cols=99 Identities=18% Similarity=0.293 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccCCCCCccccccccccc------ccccccccCC---CC-ccccccccccccccccc
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADP---NT-QLSKLTRACNTQKCIRA 131 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qF------kp~flG~~~p---~~-p~~~~~r~~~~QkCiR~ 131 (844)
+|-+.|-+||.++|...|..-.|+... +..|-+.| ++++|-+.+- .- -.+.+.|+-...+|.|+
T Consensus 218 ~i~~~~R~fl~~~gFiEV~TP~L~~~~------~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRa 291 (550)
T PTZ00401 218 RVCQYFRQFLIDSDFCEIHSPKIINAP------SEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRS 291 (550)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccCC------CCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeC
Confidence 677788899999999888654444311 11233333 3344433320 00 00235788888999997
Q ss_pred CCCCCCCCCCCCCCCcchhhhhccc-cccc-cccHHHHHHHHHHHcc
Q 003144 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELLT 176 (844)
Q Consensus 132 gGkhnDld~VG~t~rHhTfFEMLGn-~SFg-dYfK~eai~~awe~Lt 176 (844)
. +. .|.||.+=|-||-- .+|+ +| +|.++.+=+++.
T Consensus 292 E-------~s-~T~RHl~EFt~Le~E~~~~~~y--~evm~~~e~l~~ 328 (550)
T PTZ00401 292 E-------NS-NTHRHLTEFVGLDVEMRINEHY--YEVLDLAESLFN 328 (550)
T ss_pred C-------CC-CCCCCccchhhhhhhhHhcCCH--HHHHHHHHHHHH
Confidence 2 33 36799999999887 7886 56 345555554444
No 52
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=31.52 E-value=25 Score=38.65 Aligned_cols=105 Identities=14% Similarity=0.198 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhhhCCCeEecCCCcccCCCCCc--cccccccccccc-ccccccCC-C---CcccccccccccccccccCC
Q 003144 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTL--LFANAGMNQYKP-IFLGTADP-N---TQLSKLTRACNTQKCIRAGG 133 (844)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~l--lf~nAGm~qFkp-~flG~~~p-~---~p~~~~~r~~~~QkCiR~gG 133 (844)
++|-+.+-+||.++|-..|..=-|++...+.. ..+..=- ..+. +.|-+.+- . --.+.+.|+-...+|.|.
T Consensus 5 s~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~f~~~~~~-~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~fR~-- 81 (280)
T cd00777 5 SRVIKAIRNFLDEQGFVEIETPILTKSTPEGARDFLVPSRL-HPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFRD-- 81 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCCceecccc-CCCceeecccCHHHHHHHHHhcCcCcEEEeccceeC--
Confidence 46778889999999988884433433222221 1111100 0011 11322210 0 000224677888999996
Q ss_pred CCCCCCCCCCCCCcchhhhhcccc-ccccccHHHHHHHHHHHccc
Q 003144 134 KHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLTK 177 (844)
Q Consensus 134 khnDld~VG~t~rHhTfFEMLGn~-SFgdYfK~eai~~awe~Lt~ 177 (844)
+ +.+ ++||. =|.|++-- +|.|| ++.++..=+++..
T Consensus 82 ---e--~~~-~~r~~-Ef~~~e~e~~~~~~--~dlm~~~e~li~~ 117 (280)
T cd00777 82 ---E--DLR-ADRQP-EFTQIDIEMSFVDQ--EDIMSLIEGLLKY 117 (280)
T ss_pred ---C--CCC-CCccc-eeEEeEeeeccCCH--HHHHHHHHHHHHH
Confidence 2 333 45665 77787644 67776 5566666555543
No 53
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=31.43 E-value=71 Score=36.60 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=37.7
Q ss_pred cCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCcccc-------CCCCccccCchHHHHHHHHhCCC
Q 003144 237 GPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP-------LPAKHVDTGLGFERLTSILQNKM 307 (844)
Q Consensus 237 GPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~-------Lp~k~iDTGmGlERl~~vlqg~~ 307 (844)
|--||+|--|..-.+ + ...-+|-|+||..- |-|+| +|.++.--|.|.||||+||.|.+
T Consensus 279 ~TQTEVyAyHPkL~g-s--~~kysdgWiEiATF----------GlYSP~ALaeY~Id~pVMNLGlGVERlaMIl~g~~ 343 (536)
T COG2024 279 GTQTEVYAYHPKLVG-S--IEKYSDGWIEIATF----------GLYSPIALAEYGIDYPVMNLGLGVERLAMILHGAD 343 (536)
T ss_pred CccceEEEecccccc-c--ccccCCCcEEEEee----------cccChHHHHHcCCCCceeecchhHHHHHHHHhCch
Confidence 456999855531000 0 11345789999953 33444 56667778999999999999954
No 54
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.37 E-value=28 Score=39.70 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=19.8
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccHHH
Q 003144 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPI 318 (844)
Q Consensus 288 k~iDTGmGlERl~~vlqg~~snydtd~f~pl 318 (844)
--.=-||||||||++|=+-|. .-+|...
T Consensus 295 igwafglgLerLAMll~~IpD---iRlfWs~ 322 (436)
T KOG2783|consen 295 IGWAFGLGLERLAMLLFDIPD---IRLFWSF 322 (436)
T ss_pred eeeeeeccHHHHHHHHhcCcc---hheeecc
Confidence 344569999999999988763 3345444
No 55
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=29.04 E-value=3.1e+02 Score=27.84 Aligned_cols=61 Identities=21% Similarity=0.214 Sum_probs=38.5
Q ss_pred HHHHhhHHHHHHHHHHHhhCCceeec-ccccc-CCceEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 003144 641 IAPNHTCTHMLNFALREVLGDHVDQK-GSVVL-PEKLRFDFSHGKPVDPEHLRRIESIVNEQIK 702 (844)
Q Consensus 641 ~m~~HTAtHLL~aALr~vlg~~v~q~-Gs~v~-~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI~ 702 (844)
..-.||..||++.-+|......+..+ =|+++ .-|||.-+. +.+=+.+-+..+++.|+++..
T Consensus 50 ~~~iHTlEHL~A~~iRnh~~g~~~iID~SPMGCrTGFYm~l~-G~~~~~~i~~~~~~~m~dvl~ 112 (161)
T COG1854 50 PAGIHTLEHLLAGFIRNHLNGNVEIIDISPMGCRTGFYMILI-GTPTSQDIADVLEATMKDVLK 112 (161)
T ss_pred ccchhhHHHHHHHHHHhcccCceeEEEecCcccccceEEEEE-CCCCHHHHHHHHHHHHHHHHc
Confidence 35689999999999999764321111 11222 246777654 334345556777888888876
No 56
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=27.73 E-value=2e+02 Score=33.77 Aligned_cols=198 Identities=19% Similarity=0.256 Sum_probs=111.3
Q ss_pred EecccchhhhhccccccccccCCCCCCCCCChHHHHHHHHHhhhhCCCeEecCCCcccCCC---------C---Cccccc
Q 003144 29 VTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVND---------P---TLLFAN 96 (844)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d---------~---~llf~n 96 (844)
+...-+.|++| .-+...++.... ..-...+|.+...+||...|...|-...|++... . ..+|..
T Consensus 179 ~~~~e~~l~~r-r~~~~~~~~~~g---~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i 254 (417)
T PRK09537 179 FKELESELVSR-RKNDLKQMYEED---REDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV 254 (417)
T ss_pred hhhHHHHHHHh-cchhhHHhhccC---CCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee
Confidence 44555667777 223222222221 1234688999999999999999999999975321 0 001111
Q ss_pred ccccccccccc-ccc--------CCCCcccccccccccccccccCCCCCCCCCCCCCCCcchhhhhcccccccc-ccHHH
Q 003144 97 AGMNQYKPIFL-GTA--------DPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-YFKNE 166 (844)
Q Consensus 97 AGm~qFkp~fl-G~~--------~p~~p~~~~~r~~~~QkCiR~gGkhnDld~VG~t~rHhTfFEMLGn~SFgd-YfK~e 166 (844)
-.-..++|..+ +.. .-+-| -|+....+|.|. | ..| ..|..=|+|+|--.+|+ -.-.|
T Consensus 255 deel~LRpsLtPsLlr~la~n~k~~~~P----~RIFEIG~VFR~-----E--~~g--~~hlrEf~Ql~~~iiGs~~~f~d 321 (417)
T PRK09537 255 DKNFCLRPMLAPGLYNYLRKLDRILPDP----IKIFEIGPCYRK-----E--SDG--KEHLEEFTMVNFCQMGSGCTREN 321 (417)
T ss_pred CCceEehhhhHHHHHHHHHhhhhcccCC----eeEEEEeceEec-----C--CCC--CCCcceEEEEEEEEeCCchHHHH
Confidence 11111121111 100 00111 367888899995 4 223 35776777887777775 22366
Q ss_pred HHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeec
Q 003144 167 AIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDR 246 (844)
Q Consensus 167 ai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~~~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~ 246 (844)
+...+-++|. .|||+ | ++-.+ + + +. . |+|-+|.++
T Consensus 322 L~~lleeLL~-~LGI~----f-~i~s~--------------------------------~-~-fi-~---GR~adI~~g- 356 (417)
T PRK09537 322 LENIIDDFLK-HLGID----Y-EIIGD--------------------------------N-C-MV-Y---GDTIDIMHG- 356 (417)
T ss_pred HHHHHHHHHH-HCCCC----c-EEecC--------------------------------C-c-ce-e---cCeEEEEeC-
Confidence 8888888886 58986 2 33110 1 0 11 1 567788742
Q ss_pred CCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCchHHHHHHHHhCCC
Q 003144 247 TGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKM 307 (844)
Q Consensus 247 ~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTGmGlERl~~vlqg~~ 307 (844)
+ .||++-+|=+-+-. .+ --++.+++=-|+|||||+++..|..
T Consensus 357 --~--------------~el~~G~fGEi~VL--e~-fGI~~PVva~EIdLerL~~~~~g~~ 398 (417)
T PRK09537 357 --D--------------LELSSAVVGPIPLD--RE-WGIDKPWIGAGFGLERLLKVKHGYK 398 (417)
T ss_pred --C--------------EEEeeEEEEEEehh--hh-cCCCCceEEEEEeHHHHHHHHhCcH
Confidence 1 45555455544211 11 2266778999999999999999943
No 57
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=27.66 E-value=32 Score=38.56 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=23.9
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 003144 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (844)
Q Consensus 288 k~iDTGmGlERl~~vlqg~~snydtd~f 315 (844)
++=-.|||+|||++++-|..+.=|+-+|
T Consensus 290 p~~G~giGidRL~m~~~g~~~Irdv~~F 317 (322)
T cd00776 290 PHGGFGLGLERLVMWLLGLDNIREAILF 317 (322)
T ss_pred CCceeeEhHHHHHHHHcCCCchheEeec
Confidence 5778899999999999999998777444
No 58
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=27.25 E-value=33 Score=38.18 Aligned_cols=115 Identities=17% Similarity=0.257 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhhhCCCeEecCCCcccCCCCCccccccccccc-----------ccccccccCCC----Cccccccccccc
Q 003144 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY-----------KPIFLGTADPN----TQLSKLTRACNT 125 (844)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qF-----------kp~flG~~~p~----~p~~~~~r~~~~ 125 (844)
+.|-+.+-+||.++|-..|..--+.+. . -+.+|..+| ++.+|-+.+-- -=.+.+.|+-..
T Consensus 5 s~i~~~ir~~f~~~gF~EV~TP~l~~~-~----~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfei 79 (304)
T TIGR00462 5 ARLLAAIRAFFAERGVLEVETPLLSPA-P----VTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQI 79 (304)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecC-C----CCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEE
Confidence 467788999999999998865555542 1 111233333 34444433210 000125677788
Q ss_pred ccccccCCCCCCCCCCCCCCCcchhhhhcccc-ccccccHHHHHHHHHHHcccccC-CCCCceEEEEe
Q 003144 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLTKVYR-LPADRLYATYF 191 (844)
Q Consensus 126 QkCiR~gGkhnDld~VG~t~rHhTfFEMLGn~-SFgdYfK~eai~~awe~Lt~~l~-l~~~rL~vT~~ 191 (844)
-||.|+. ++ +.||.+=|-||=-. +|.|| ++.++..=+++..++. +.+.--.+||-
T Consensus 80 gp~FRaE-------~~--~~rHl~EFtmLE~e~~~~d~--~d~m~~~e~li~~i~~~~~~~~~~it~~ 136 (304)
T TIGR00462 80 CKVFRNG-------ER--GRRHNPEFTMLEWYRPGFDY--HDLMDEVEALLQELLGDPFAPWERLSYQ 136 (304)
T ss_pred cCceeCC-------CC--CCCcccHHHhHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCcEEEEHH
Confidence 8999973 23 36999988887432 55566 6677777777765554 22222234763
No 59
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=25.14 E-value=2.7e+02 Score=34.19 Aligned_cols=164 Identities=13% Similarity=0.118 Sum_probs=85.8
Q ss_pred HHHHHHHHHhhhhCCCeEecCCCcccCCCCCccccccccc-c------cc-----cccc-cccC----------CCC--c
Q 003144 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMN-Q------YK-----PIFL-GTAD----------PNT--Q 115 (844)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~-q------Fk-----p~fl-G~~~----------p~~--p 115 (844)
.+|-+.+.+.+.+.|+..|..-.+++. + ||.-+|-. . |. .+.| .+.. ..+ .
T Consensus 278 ~~i~~~~~~~~~~~G~~~v~tP~l~~~---~-l~~~sG~~~~~~~emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~ 353 (639)
T PRK12444 278 NELEAFLREIQKEYNYQEVRTPFMMNQ---E-LWERSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRE 353 (639)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccCCH---H-HHhhcCChhhhhhhcCeecCCCcEEEEccCCCHHHHHHHhCcccChhh
Confidence 456667777788889999877666652 1 33333310 0 11 1111 0100 001 1
Q ss_pred ccccccccccccccccCCCCCCCCCC--CCCCCcchhhhhccccccccc--cHH---HHHHHHHHHcccccCCCCCceEE
Q 003144 116 LSKLTRACNTQKCIRAGGKHNDLDDV--GKDTYHHTFFEMLGNWSFGDY--FKN---EAIEWAWELLTKVYRLPADRLYA 188 (844)
Q Consensus 116 ~~~~~r~~~~QkCiR~gGkhnDld~V--G~t~rHhTfFEMLGn~SFgdY--fK~---eai~~awe~Lt~~l~l~~~rL~v 188 (844)
+ .-|.+...+|.|- ....- |....| - |.|.+-++||.= -.+ +.+.++++++ +.|||| =++
T Consensus 354 L--P~r~~~~g~~fR~-----E~~~~~~Gl~R~r-e-F~q~d~~~f~~~~~~~~e~~~~~~~~~~i~-~~lgl~-~~~-- 420 (639)
T PRK12444 354 L--PIRMCEFGQVHRH-----EFSGALNGLLRVR-T-FCQDDAHLFVTPDQIEDEIKSVMAQIDYVY-KTFGFE-YEV-- 420 (639)
T ss_pred C--CceeEEeccccCC-----CCCcCCcCcceee-e-eEEccEEEECCHHHHHHHHHHHHHHHHHHH-HHcCCc-EEE--
Confidence 1 1367778899994 43322 433333 3 789999999841 122 4788899998 579995 233
Q ss_pred EEeCCCCcCCCCCcHHHHHHHHhc----CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCC
Q 003144 189 TYFGGDEKAGLAPDNEARDIWLKF----LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGN 249 (844)
Q Consensus 189 T~~~gd~~~gl~~D~E~~~iW~~~----~~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~ 249 (844)
.+-.. +...+ .++|+.+.|.+. +.... +....|-+++. -=||+.|+...-.++
T Consensus 421 ~~~~r-~~~~~-G~~e~~~~~~~~l~~~l~~~~---~~y~~~~~~ga---~Y~~~~e~~~~~~~~ 477 (639)
T PRK12444 421 ELSTR-PEDSM-GDDELWEQAEASLENVLQSLN---YKYRLNEGDGA---FYGPKIDFHIKDALN 477 (639)
T ss_pred EEECC-ccccC-CCHHHHHHHHHHHHHHHHHcC---CCceeccCCcc---cccceEEEEeecCCC
Confidence 22111 11122 257777777643 22211 12233434322 348899998765444
No 60
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=24.94 E-value=1e+02 Score=30.57 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCChHHhHH--hhcccCCChhhHHHHHHHcCc
Q 003144 419 REAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV-QGKVLSGQDAFI--LWDTYGFPLDLTQLMAEERGL 485 (844)
Q Consensus 419 ~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~-~~~~l~g~~af~--Lydt~GfP~dlt~~~a~e~g~ 485 (844)
.++.+.+.+..-.+.|...+.+++.+=...+++. ....+++++|.+ |-|..|..-|++..++++.|+
T Consensus 84 ~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~~~v 153 (154)
T PF01343_consen 84 ERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKLAGV 153 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHHcCC
Confidence 4577899999999999999999986443333332 245888888875 778888888888888887765
No 61
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=24.73 E-value=40 Score=37.72 Aligned_cols=107 Identities=18% Similarity=0.302 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhhhhCCCeEecCCCcccCCCCC--ccccccc--cccc-ccccccccCCCC---cc-cccccccccccccc
Q 003144 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--LLFANAG--MNQY-KPIFLGTADPNT---QL-SKLTRACNTQKCIR 130 (844)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~--llf~nAG--m~qF-kp~flG~~~p~~---p~-~~~~r~~~~QkCiR 130 (844)
-+.|-+.+-+||.++|...|..--+++...+. =.|..-. ..-| +|+||-+.+--. -+ +.+.|+-...+|.|
T Consensus 25 rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR 104 (335)
T PF00152_consen 25 RSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFR 104 (335)
T ss_dssp HHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-
T ss_pred HHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcChHHHHhhhccccchhhhheeccee
Confidence 35677888899999999888665555533222 2333220 0011 344443331100 00 11455666699999
Q ss_pred cCCCCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHHcc
Q 003144 131 AGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLT 176 (844)
Q Consensus 131 ~gGkhnDld~VG~t~rHhTfFEMLGn-~SFgdYfK~eai~~awe~Lt 176 (844)
.. +. .|.||..=|-||== .+|.||.. .++.+-+++.
T Consensus 105 ~E-------~~-~~~rHl~EFtmLE~e~a~~~~~~--lm~~~e~li~ 141 (335)
T PF00152_consen 105 NE-------ES-RTRRHLPEFTMLEWEMAFADYDD--LMDLIEELIK 141 (335)
T ss_dssp BS-------SS-CBTTBSSEEEEEEEEEETSSHHH--HHHHHHHHHH
T ss_pred cc-------Cc-ccccchhhhhhhhhccccCcHHH--hHHHHHHHHH
Confidence 73 12 47999877777643 35666643 4444444433
No 62
>PLN02850 aspartate-tRNA ligase
Probab=23.24 E-value=96 Score=37.40 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccCC-CCC-ccccccccccc-ccccccccCC---CC-cccccccccccccccccCCC
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPVN-DPT-LLFANAGMNQY-KPIFLGTADP---NT-QLSKLTRACNTQKCIRAGGK 134 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~-d~~-llf~nAGm~qF-kp~flG~~~p---~~-p~~~~~r~~~~QkCiR~gGk 134 (844)
.|-+.|-+||.++|...|..--|++.. ++. -.|.- .-| ++++|-+.+- .- -.+.+.|+-..-+|.|+.
T Consensus 230 ~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v---~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE-- 304 (530)
T PLN02850 230 QVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL---DYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAE-- 304 (530)
T ss_pred HHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee---ccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccC--
Confidence 667788899999998888544443311 111 11211 011 4455544321 00 012357888889999972
Q ss_pred CCCCCCCCCCCCcchhhhhcccc-ccc-cccHHHHHHHHHHHcc
Q 003144 135 HNDLDDVGKDTYHHTFFEMLGNW-SFG-DYFKNEAIEWAWELLT 176 (844)
Q Consensus 135 hnDld~VG~t~rHhTfFEMLGn~-SFg-dYfK~eai~~awe~Lt 176 (844)
+ ..|.||.+=|-||--- +|+ +| +|.++.+=+++.
T Consensus 305 -----~-s~t~RHl~EFt~Le~Em~~~~~y--~evm~~~E~ll~ 340 (530)
T PLN02850 305 -----D-SFTHRHLCEFTGLDLEMEIKEHY--SEVLDVVDELFV 340 (530)
T ss_pred -----C-CCCCccchhhccchhhhhhhcCH--HHHHHHHHHHHH
Confidence 2 2578999989998655 776 35 445444444443
No 63
>PLN02850 aspartate-tRNA ligase
Probab=23.01 E-value=41 Score=40.46 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=24.5
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 003144 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (844)
Q Consensus 288 k~iDTGmGlERl~~vlqg~~snydtd~f~ 316 (844)
+|=--|+|||||++++-|.+|.=|+-+|.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FP 522 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFP 522 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecC
Confidence 36678999999999999999988876664
No 64
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=22.44 E-value=44 Score=39.37 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=23.5
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 003144 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (844)
Q Consensus 288 k~iDTGmGlERl~~vlqg~~snydtd~f~ 316 (844)
++=--|||+|||++.+-|.++.=|+-+|.
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv~~FP 445 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDAIPFP 445 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccCc
Confidence 46667999999999999998877765553
No 65
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=21.88 E-value=45 Score=37.52 Aligned_cols=100 Identities=17% Similarity=0.347 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhhhCCCeEecCCCcccCCCCCccccccccccc--------ccccccccCCC---Ccc-cccccccccccc
Q 003144 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY--------KPIFLGTADPN---TQL-SKLTRACNTQKC 128 (844)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qF--------kp~flG~~~p~---~p~-~~~~r~~~~QkC 128 (844)
++|-+.+-+||.++|-.-|..--+++...+ |+..+| ++.+|-+.+.- --+ +.+.|+-...+|
T Consensus 12 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~~------~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf~i~~~ 85 (329)
T cd00775 12 SKIISYIRKFLDDRGFLEVETPMLQPIAGG------AAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVYEIGRN 85 (329)
T ss_pred HHHHHHHHHHHHHCCCEEEECCccccCCCC------ccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEEEEecc
Confidence 567788899999999998865555543222 222233 33444332210 000 135678888999
Q ss_pred cccCCCCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHHccc
Q 003144 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLTK 177 (844)
Q Consensus 129 iR~gGkhnDld~VG~t~rHhTfFEMLGn-~SFgdYfK~eai~~awe~Lt~ 177 (844)
.|+. ++| .||.+=|-||=- .+|.+| +|.++.+=+++..
T Consensus 86 FR~E-------~~~--~rHl~EFt~le~e~~~~~~--~~~m~~~e~li~~ 124 (329)
T cd00775 86 FRNE-------GID--LTHNPEFTMIEFYEAYADY--NDMMDLTEDLFSG 124 (329)
T ss_pred ccCC-------CCC--CCCCCceEEEEEeeecCCH--HHHHHHHHHHHHH
Confidence 9972 343 699998888744 466666 5566655555543
No 66
>PRK06462 asparagine synthetase A; Reviewed
Probab=21.82 E-value=47 Score=37.48 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhhhhCCCeEecCCCcccCCCCCccc-cccccccc------ccccccccCC---CCccccccccccccccc
Q 003144 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLF-ANAGMNQY------KPIFLGTADP---NTQLSKLTRACNTQKCI 129 (844)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf-~nAGm~qF------kp~flG~~~p---~~p~~~~~r~~~~QkCi 129 (844)
-++|-+.+-+||.++|-..|..==+.+..++.+-- .+-|...| ++++|-+.+- .--.+.+.|+-...+|.
T Consensus 33 Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL~~Spql~k~ll~~g~~rVfeI~p~F 112 (335)
T PRK06462 33 QSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNF 112 (335)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceeeccCHHHHHHHHHhhcCcEEEEeccc
Confidence 35677888899999998877433233322221100 00001111 2223322110 00001246778888999
Q ss_pred ccCCCCCCCCCCCC-CCCcchhhhhcccc-ccccccHHHHHHHHHHHcc
Q 003144 130 RAGGKHNDLDDVGK-DTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (844)
Q Consensus 130 R~gGkhnDld~VG~-t~rHhTfFEMLGn~-SFgdYfK~eai~~awe~Lt 176 (844)
|.. .++. +.||..=|-||--. .|.|| +|.++.+=+++.
T Consensus 113 R~E-------~~~~~~~rHl~EFtmlE~e~~~~d~--~dlm~~~e~lv~ 152 (335)
T PRK06462 113 RLE-------PVDKDTGRHLYEFTQLDIEIEGADL--DEVMDLIEDLIK 152 (335)
T ss_pred cCC-------CCCCCCCCCCCchheeeehhhcCCH--HHHHHHHHHHHH
Confidence 973 3442 26998888887554 45465 445555444443
No 67
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=21.53 E-value=34 Score=40.44 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=70.6
Q ss_pred HHHHHHHHhhhhCCCeEec--CCCcccCCCCCccccccccccccc-ccccccCCCCcc-----cccccccccccccccCC
Q 003144 62 KVRDTFFKFFEDKNHVNWK--SSPVVPVNDPTLLFANAGMNQYKP-IFLGTADPNTQL-----SKLTRACNTQKCIRAGG 133 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~--ssslvp~~d~~llf~nAGm~qFkp-~flG~~~p~~p~-----~~~~r~~~~QkCiR~gG 133 (844)
.|.+..-+|+.++|-.-|. =-..||-+..---|++- +|.+.- .+|-.++-- -| +.+.|+--.-++.|
T Consensus 185 ~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~Th-hNald~dlyLRIApEL-yLKRliVGG~erVfEIgr~FR--- 259 (502)
T COG1190 185 KIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITH-HNALDMDLYLRIAPEL-YLKRLIVGGFERVFEIGRNFR--- 259 (502)
T ss_pred HHHHHHHHHHHHCCCeEeccccccccCCCcccccceee-ecccCCceEEeeccHH-HHHHHHhcCchhheeeccccc---
Confidence 4555556789999987774 23333433333333332 333321 223222100 00 00122333334445
Q ss_pred CCCCCCCCCCCCCcchhhhhccc-ccccccc-----HHHHHHHHHHHccc---------ccCCCCCceEEEEeCCC-CcC
Q 003144 134 KHNDLDDVGKDTYHHTFFEMLGN-WSFGDYF-----KNEAIEWAWELLTK---------VYRLPADRLYATYFGGD-EKA 197 (844)
Q Consensus 134 khnDld~VG~t~rHhTfFEMLGn-~SFgdYf-----K~eai~~awe~Lt~---------~l~l~~~rL~vT~~~gd-~~~ 197 (844)
|=|.|.+|--=|.|+-. |...||- -++-|+.+-.-++. .+.+.+.-.-||+++-= +.+
T Consensus 260 ------NEGid~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~m~dal~e~~ 333 (502)
T COG1190 260 ------NEGIDTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITMVDALKEYL 333 (502)
T ss_pred ------cCCCccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEecCCCeeeeehHHHHHHHh
Confidence 66889999888888765 4556662 34444433333321 13344443444554311 011
Q ss_pred -----CCCCcHHHHHHHHhc-CC
Q 003144 198 -----GLAPDNEARDIWLKF-LP 214 (844)
Q Consensus 198 -----gl~~D~E~~~iW~~~-~~ 214 (844)
-+.+|++++++-+++ ++
T Consensus 334 g~~~~~~~~~e~~~~~ak~~~i~ 356 (502)
T COG1190 334 GVDFDDLFDDEEAKELAKKHGIE 356 (502)
T ss_pred CccccccCCHHHHHHHHHHhCCC
Confidence 346788999999887 54
No 68
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=21.33 E-value=48 Score=40.09 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.0
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 003144 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (844)
Q Consensus 288 k~iDTGmGlERl~~vlqg~~snydtd~f~ 316 (844)
+|=-.|+|||||++++-|..+.=++-+|.
T Consensus 514 PhgG~GiGlERLvM~~lg~~nIR~v~lFP 542 (550)
T PTZ00401 514 PHGGFGVGLERVVMLYLGLSNVRLASLFP 542 (550)
T ss_pred CCceEEEhHHHHHHHHhCCCcHheeecCC
Confidence 35577999999999999999887776654
No 69
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=21.18 E-value=48 Score=40.32 Aligned_cols=29 Identities=38% Similarity=0.465 Sum_probs=24.8
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 003144 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (844)
Q Consensus 288 k~iDTGmGlERl~~vlqg~~snydtd~f~ 316 (844)
+|---|||||||++.+-|..+.=|+-+|.
T Consensus 550 PhgGfGLGiERLvm~ltGl~nIRDvi~FP 578 (586)
T PTZ00425 550 PHAGFGLGFERLIMLVTGVDNIKDTIPFP 578 (586)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEEECc
Confidence 57778999999999999999988885554
No 70
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=21.11 E-value=1.4e+02 Score=28.64 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=36.9
Q ss_pred HHHHHHHhcccChhhHHcHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHhHHh
Q 003144 402 VNIVVKVMGDVFPELKQREAHIREIIAA---EEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFIL 465 (844)
Q Consensus 402 v~~v~~~~~~~ypel~~~~~~i~~ii~~---Ee~~F~~tl~~g~~~~~~~~~~~~~~~l~g~~af~L 465 (844)
+..+...|+-.||-++.+.+.|.+-|.. ++..-. ..-.++++ .+.++.|+.++|-++
T Consensus 52 lKe~e~~lgiSYPTvR~rLd~ii~~lg~~~~~~~~~~---~~~~~IL~----~L~~GeIs~eeA~~~ 111 (113)
T PF09862_consen 52 LKEMEKELGISYPTVRNRLDKIIEKLGYEEDEEEEEE---DERKEILD----KLEKGEISVEEALEI 111 (113)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHhCCCCCcccccc---hhHHHHHH----HHHcCCCCHHHHHHH
Confidence 4566788899999999999888888776 111111 11123333 333578999999764
No 71
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=20.97 E-value=67 Score=26.37 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-++-.-+.+.+.+|.|++++||.+.+
T Consensus 16 K~~l~~~it~~~~~~lg~~~~~i~V~i~E 44 (60)
T PF01361_consen 16 KRELAEAITDAVVEVLGIPPERISVVIEE 44 (60)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCCCeEEEEEEE
Confidence 55666667777888999999999998865
No 72
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=20.89 E-value=58 Score=38.09 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhhCCCeEecCCCcccCCCCC--cccccccccccc-cccccccCC---CCcccccccccccccccccCCC
Q 003144 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--LLFANAGMNQYK-PIFLGTADP---NTQLSKLTRACNTQKCIRAGGK 134 (844)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~--llf~nAGm~qFk-p~flG~~~p---~~p~~~~~r~~~~QkCiR~gGk 134 (844)
+.|.+.|-+||.++|-.-|.+-=+++.+.+. -||-. ..|. +.||.+..- ..-...+.|+-+..+++|+
T Consensus 138 s~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v---~yf~~~a~LtqS~QLyke~~~~al~rVf~igP~FRA--- 211 (435)
T COG0017 138 SSILRAIREFFYENGFTEVHTPIITASATEGGGELFKV---DYFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRA--- 211 (435)
T ss_pred HHHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEE---eecCcceEEecCHHHHHHHHHHHhCceEEecCceec---
Confidence 5788899999999999998877677644332 34432 2332 255544321 0001126799999999999
Q ss_pred CCCCCCCCCCCCcchhhhhc
Q 003144 135 HNDLDDVGKDTYHHTFFEML 154 (844)
Q Consensus 135 hnDld~VG~t~rHhTfFEML 154 (844)
.=-.|.||++=|-|+
T Consensus 212 -----E~s~T~RHL~EF~~l 226 (435)
T COG0017 212 -----EKSNTRRHLSEFWML 226 (435)
T ss_pred -----CCCCCcchhhhHhee
Confidence 233489999977664
No 73
>TIGR00758 UDG_fam4 uracil-DNA glycosylase, family 4. This well-conserved family of proteins is about 200 residues in length and homologous to the N-terminus of the DNA polymerase of phage SPO1 of Bacillus subtilis. The member from Thermus thermophilus HB8 is known to act as uracil-DNA glycosylase, an enzyme of DNA base excision repair. Its appearance as a domain of phage DNA polymerases could be consistent with uracil-DNA glycosylase activity.
Probab=20.80 E-value=1.5e+02 Score=29.98 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=42.3
Q ss_pred ccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcC-CCCCcHH----HHHHHHhc---CCCCCcccCCCC
Q 003144 160 GDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKA-GLAPDNE----ARDIWLKF---LPASRVLPFGCK 224 (844)
Q Consensus 160 gdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~-gl~~D~E----~~~iW~~~---~~~~~I~~~~~~ 224 (844)
|..|-..+=++-+++|. .+||+++++|+|.---..+. +-+|+.+ |...|.+. +.+.-|+.+|..
T Consensus 39 g~pf~g~sG~~L~~~l~-~~gl~~~~vy~t~~~kc~P~~~r~P~~~Ei~~c~~~l~~eI~~v~P~~Iv~lG~~ 110 (173)
T TIGR00758 39 GRPFVGRAGKLLDEMLA-AIGLSRENVYITNVVKCRPPNNRDPTPEEVEACAPYLVKQIELIRPKVIICLGRT 110 (173)
T ss_pred CCCCcChHHHHHHHHHH-HcCCCcccEEEeccccccCCCCCCcCHHHHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 44455556666777774 78999999999975433222 2234433 77777765 888899988854
No 74
>PLN02532 asparagine-tRNA synthetase
Probab=20.62 E-value=50 Score=40.48 Aligned_cols=29 Identities=28% Similarity=0.262 Sum_probs=24.5
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 003144 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (844)
Q Consensus 288 k~iDTGmGlERl~~vlqg~~snydtd~f~ 316 (844)
+|=--|||||||++.+-|.++.=|+-+|.
T Consensus 597 PHgGfGLG~ERLvm~ltGl~nIRDvi~FP 625 (633)
T PLN02532 597 KHSGFSLGFELMVLFATGLPDVRDAIPFP 625 (633)
T ss_pred CCeEEEEhHHHHHHHHhCCCchheEeecC
Confidence 57778999999999999999988875553
No 75
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=20.52 E-value=1.8e+02 Score=33.35 Aligned_cols=120 Identities=13% Similarity=0.063 Sum_probs=70.7
Q ss_pred CCCCCChHHHHHHHHHhhhhCCCeEecCCCcccCC---CCCccccccccccccccccccc---CCC-----------Ccc
Q 003144 54 QVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVN---DPTLLFANAGMNQYKPIFLGTA---DPN-----------TQL 116 (844)
Q Consensus 54 ~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~---d~~llf~nAGm~qFkp~flG~~---~p~-----------~p~ 116 (844)
||+-+...+|++++.+-|+++|...|....+-+.+ +..--.+..-|..|..- .|.. .|. +..
T Consensus 1 ~~~~~~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpD~T~piaR~~~~~~~ 79 (373)
T PRK12295 1 MMPLSASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDE-NGEELCLRPDFTIPVCRRHIATAG 79 (373)
T ss_pred CCcchhHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECC-CCCEEeeCCCCcHHHHHHHHHcCC
Confidence 34446688999999999999999999655554421 00000112224444321 1110 000 001
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCC
Q 003144 117 SKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPA 183 (844)
Q Consensus 117 ~~~~r~~~~QkCiR~gGkhnDld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~ 183 (844)
....|.+-+++|.|. + .-...-.|..-||.+|.-+-= +--.|.|..|++.|. .+|++.
T Consensus 80 ~~p~R~~Y~g~VfR~-----~--~gr~rEf~Q~GvEiiG~~~~~-~aDaEvi~l~~~~L~-~lgl~~ 137 (373)
T PRK12295 80 GEPARYAYLGEVFRQ-----R--RDRASEFLQAGIESFGRADPA-AADAEVLALALEALA-ALGPGD 137 (373)
T ss_pred CCCeEEEEEccEEEC-----C--CCCCCcceEeeEEeeCCCCCc-cchHHHHHHHHHHHH-HcCCCc
Confidence 123478888999996 3 222334557789999965411 225899999999986 578863
No 76
>PLN02603 asparaginyl-tRNA synthetase
Probab=20.51 E-value=51 Score=39.97 Aligned_cols=29 Identities=34% Similarity=0.413 Sum_probs=24.5
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 003144 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (844)
Q Consensus 288 k~iDTGmGlERl~~vlqg~~snydtd~f~ 316 (844)
+|---|||+|||++.+-|..|.=|+-+|.
T Consensus 529 PhgGfGlG~ERLvm~ltg~~nIRdvi~FP 557 (565)
T PLN02603 529 PHAGFGLGFERLVQFATGIDNIRDAIPFP 557 (565)
T ss_pred CCceeEEcHHHHHHHHhCCCchhheeecc
Confidence 57788999999999999999988775553
No 77
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.51 E-value=1.2e+02 Score=27.04 Aligned_cols=32 Identities=6% Similarity=0.187 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHhHHhhcc
Q 003144 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (844)
Q Consensus 437 tl~~g~~~~~~~~~~~~~~~l~g~~af~Lydt 468 (844)
|.+.+++.|+.+++++.++.+|-++++.+|..
T Consensus 6 sfEeal~~LE~Iv~~LE~~~l~Leesl~lyee 37 (76)
T PRK14063 6 SFEEAISQLEHLVSKLEQGDVPLEEAISYFKE 37 (76)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 44567778888888888889999999999864
No 78
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=20.50 E-value=1.6e+02 Score=31.72 Aligned_cols=116 Identities=16% Similarity=0.109 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhhhhCCCeEecCCCcccCC--CCCc-cccccccccc----------ccccc-cccC--CCCcc--ccccc
Q 003144 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVN--DPTL-LFANAGMNQY----------KPIFL-GTAD--PNTQL--SKLTR 121 (844)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~--d~~l-lf~nAGm~qF----------kp~fl-G~~~--p~~p~--~~~~r 121 (844)
-+.|++.+.+.|+++|...|....+.|.+ -.+. -....-|..| .|=+. ..+. ..++. ....|
T Consensus 5 ~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k 84 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPLPLK 84 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCCCeE
Confidence 46789999999999999999777776621 0000 0011112222 22111 0000 00100 11247
Q ss_pred ccccccccccCCCCCCCCCCCCC-CCcchhhhhccccccccccHHHHHHHHHHHcccccCCCC
Q 003144 122 ACNTQKCIRAGGKHNDLDDVGKD-TYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPA 183 (844)
Q Consensus 122 ~~~~QkCiR~gGkhnDld~VG~t-~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~ 183 (844)
.+.+++|.|.. . ..-|+. ..+..-||++|.-|.-. -.|.|..+++.|. .+|++.
T Consensus 85 ~~y~g~vfR~e----~-~~~g~~re~~Q~g~Eiig~~~~~~--daE~i~l~~~~l~-~lg~~~ 139 (261)
T cd00773 85 LYYIGPVFRYE----R-PQKGRYREFYQVGVEIIGSDSPLA--DAEVIALAVEILE-ALGLKD 139 (261)
T ss_pred EEEEcCEEecC----C-CCCCCccceEEeceeeeCCCChHH--HHHHHHHHHHHHH-HcCCCc
Confidence 88999999962 2 112332 34466788888865521 3689999999986 578654
No 79
>PLN02221 asparaginyl-tRNA synthetase
Probab=20.15 E-value=51 Score=40.00 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=34.5
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcchhhhhcccc-ccccccHHHHHHHHHHHc
Q 003144 119 LTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELL 175 (844)
Q Consensus 119 ~~r~~~~QkCiR~gGkhnDld~VG~t~rHhTfFEMLGn~-SFgdYfK~eai~~awe~L 175 (844)
+.|+-...+|.|+- -..|.||.+=|-||--- +|.|| ++.++.+=+++
T Consensus 326 l~rVfeIgP~FRAE--------~s~T~RHL~EFtmlE~Emaf~d~--~dvm~l~E~lv 373 (572)
T PLN02221 326 LSSVYTFGPTFRAE--------NSHTSRHLAEFWMVEPEIAFADL--EDDMNCAEAYV 373 (572)
T ss_pred cCCeEEEccceecC--------CCCCCcccccccceeeeeecCCH--HHHHHHHHHHH
Confidence 67888999999982 23588999999998553 78887 56665554443
No 80
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=20.08 E-value=1.5e+02 Score=36.72 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=37.7
Q ss_pred hhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCccchhhhHHHHHHHhcccChhhH
Q 003144 348 RVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELK 417 (844)
Q Consensus 348 rviaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~ 417 (844)
|.+|||++++-+--. -..+.-++=+.+||-.++|+++ .+ ...|.+.+.+.+-..|-+++
T Consensus 619 r~La~HivsLy~e~~-----~~~~~~~~d~~~lr~yi~yArk--~i----~p~l~~ea~~~l~~ayvd~r 677 (804)
T KOG0478|consen 619 RRLADHIVALYPETG-----EKQGSEAIDMNLLRDYIRYARK--NI----HPALSPEASQALIQAYVDMR 677 (804)
T ss_pred HHHHHHHHHhccccc-----ccchhHHHhHHHHHHHHHHHhc--cC----CccccHHHHHHHHHHhhhhh
Confidence 679999999766432 4556667788889999999954 12 23344444444444444443
No 81
>cd06008 NF-X1-zinc-finger Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms.
Probab=20.03 E-value=42 Score=27.13 Aligned_cols=11 Identities=55% Similarity=1.346 Sum_probs=9.3
Q ss_pred CCCCcCceeEE
Q 003144 233 TGPCGPCSEIH 243 (844)
Q Consensus 233 ~GpcGPcsEI~ 243 (844)
+|||+||+|+-
T Consensus 22 ~G~C~pC~~~~ 32 (49)
T cd06008 22 EGPCPPCPETV 32 (49)
T ss_pred CCcCcCcCCcc
Confidence 68999999864
Done!