Query 003144
Match_columns 844
No_of_seqs 371 out of 2288
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:52:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 100.0 2E-196 6E-201 1717.0 48.8 635 54-799 53-752 (752)
2 2ztg_A Alanyl-tRNA synthetase; 100.0 1E-184 4E-189 1616.2 46.1 624 55-799 57-738 (739)
3 3hy0_A Alanyl-tRNA synthetase; 100.0 3E-175 9E-180 1437.3 29.6 424 58-506 2-438 (441)
4 1yfs_A Alanyl-tRNA synthetase; 100.0 5E-174 2E-178 1434.8 25.9 423 58-508 3-430 (465)
5 3kew_A DHHA1 domain protein; s 100.0 2.8E-52 9.5E-57 439.0 24.1 223 540-803 11-233 (241)
6 2e1b_A PH0108, 216AA long hypo 100.0 7.6E-48 2.6E-52 399.3 16.9 200 540-796 13-214 (216)
7 1nyr_A Threonyl-tRNA synthetas 99.9 1.5E-27 5E-32 283.5 16.4 194 622-837 52-257 (645)
8 1tke_A Threonyl-tRNA synthetas 99.9 3.6E-27 1.2E-31 245.5 17.2 169 605-798 39-223 (224)
9 1qf6_A THRRS, threonyl-tRNA sy 99.9 1.7E-26 5.7E-31 273.9 19.6 192 622-836 50-257 (642)
10 1v4p_A Alanyl-tRNA synthetase; 99.9 1.2E-25 4.1E-30 221.4 17.5 144 640-799 4-152 (157)
11 3rf1_A Glycyl-tRNA synthetase 96.2 0.022 7.7E-07 59.5 10.6 183 50-312 16-201 (311)
12 1j5w_A Glycyl-tRNA synthetase 87.9 2 6.7E-05 44.9 9.5 175 58-312 13-189 (298)
13 2dq3_A Seryl-tRNA synthetase; 67.7 6.8 0.00023 44.0 6.5 110 60-182 175-316 (425)
14 4dh4_A MIF; trimer, isomerase; 65.0 3.1 0.00011 37.7 2.5 30 163-192 72-101 (114)
15 2cja_A Seryl-tRNA synthetase; 62.6 22 0.00077 40.9 9.6 53 121-182 346-407 (522)
16 3fwu_A Macrophage migration in 59.1 4.9 0.00017 37.8 2.8 29 164-192 94-122 (133)
17 3djh_A Macrophage migration in 58.5 4.8 0.00016 36.5 2.5 29 164-192 72-100 (114)
18 3b64_A Macrophage migration in 57.2 5.7 0.0002 35.7 2.8 30 163-192 72-101 (112)
19 3kan_A D-dopachrome tautomeras 57.0 5.2 0.00018 36.6 2.5 29 164-192 73-101 (117)
20 3fwt_A Macrophage migration in 54.5 6 0.0002 37.1 2.5 29 164-192 94-122 (133)
21 3t5s_A Gilaa.00834.A, macropha 52.8 6.4 0.00022 37.1 2.4 29 164-192 94-122 (135)
22 2wkb_A Macrophage migration in 51.8 7.7 0.00026 35.7 2.8 30 163-192 72-101 (125)
23 1hfo_A Migration inhibitory fa 50.7 7.7 0.00026 34.8 2.5 29 164-192 72-100 (113)
24 2xcz_A Possible ATLS1-like lig 50.4 7.7 0.00026 34.9 2.5 29 164-192 73-101 (115)
25 2os5_A Acemif; macrophage migr 49.0 8.3 0.00029 35.0 2.5 29 164-192 73-101 (119)
26 1uiz_A MIF, macrophage migrati 49.0 8.4 0.00029 34.7 2.5 29 164-192 73-101 (115)
27 3n4h_A Putative tautomerase; C 42.4 12 0.00041 35.4 2.5 54 163-216 77-135 (148)
28 1nnh_A Asparaginyl-tRNA synthe 42.2 10 0.00034 40.4 2.1 109 60-179 18-141 (294)
29 2opa_A Probable tautomerase YW 40.8 14 0.00048 28.9 2.3 30 163-192 15-44 (61)
30 1otf_A 4-oxalocrotonate tautom 40.6 14 0.00048 28.9 2.3 30 163-192 15-44 (62)
31 3abf_A 4-oxalocrotonate tautom 38.3 19 0.00064 28.5 2.7 29 164-192 17-45 (64)
32 3m20_A 4-oxalocrotonate tautom 36.4 28 0.00097 27.7 3.5 29 164-192 15-43 (62)
33 1gyx_A YDCE, B1461, hypothetic 35.7 39 0.0014 28.0 4.5 42 163-211 16-57 (76)
34 3m21_A Probable tautomerase HP 31.0 29 0.00098 28.0 2.7 29 164-192 19-47 (67)
35 4gyx_A Type III collagen fragm 30.3 18 0.00062 24.7 1.1 10 231-240 19-28 (31)
36 1mww_A Hypothetical protein HI 29.8 26 0.00087 32.1 2.5 30 163-192 74-103 (128)
37 1eh2_A EPS15; calcium binding, 28.6 1E+02 0.0035 27.3 6.2 48 453-500 27-78 (106)
38 1eov_A ASPRS, aspartyl-tRNA sy 27.8 46 0.0016 37.9 4.7 99 62-176 183-293 (487)
39 2aal_A Malonate semialdehyde d 27.0 31 0.001 31.7 2.5 29 164-192 81-109 (131)
40 3a5y_A GENX, putative lysyl-tR 26.8 23 0.0008 38.5 1.9 103 62-180 41-160 (345)
41 3mb2_A 4-oxalocrotonate tautom 26.5 35 0.0012 28.0 2.5 29 164-192 17-45 (72)
42 2x4k_A 4-oxalocrotonate tautom 24.8 37 0.0013 26.2 2.3 29 164-192 19-47 (63)
43 1wyd_A Hypothetical aspartyl-t 24.0 28 0.00096 39.0 1.9 101 62-177 139-248 (429)
44 3a5y_A GENX, putative lysyl-tR 23.9 82 0.0028 34.2 5.6 28 288-315 313-340 (345)
45 1qjt_A EH1, epidermal growth f 23.6 1.1E+02 0.0039 26.4 5.5 47 453-499 24-74 (99)
46 3nem_A Aspartyl-tRNA synthetas 23.6 29 0.00098 39.1 1.9 28 288-315 402-429 (438)
47 1n9w_A Aspartyl-tRNA synthetas 23.1 30 0.001 38.7 1.9 103 61-178 129-241 (422)
48 3bju_A Lysyl-tRNA synthetase; 22.7 31 0.001 39.8 1.9 99 62-175 181-297 (521)
49 3m4p_A Ehasnrs, asparaginyl-tR 22.5 31 0.0011 39.1 1.9 27 289-315 421-447 (456)
50 1apy_A Aspartylglucosaminidase 22.3 93 0.0032 30.3 5.0 51 165-240 107-160 (162)
51 3i7f_A Aspartyl-tRNA synthetas 21.9 32 0.0011 39.8 1.9 87 62-162 249-347 (548)
52 1x54_A Asparaginyl-tRNA synthe 21.8 33 0.0011 38.5 1.9 101 62-177 140-249 (434)
53 1e1o_A Lysyl-tRNA synthetase, 21.7 33 0.0011 39.4 1.9 103 62-176 188-298 (504)
54 3a74_A Lysyl-tRNA synthetase; 21.6 33 0.0011 39.2 1.9 104 61-177 178-290 (493)
55 4ex5_A Lysine--tRNA ligase; st 21.5 33 0.0011 39.6 1.9 99 62-175 209-325 (529)
56 2xgt_A Asparaginyl-tRNA synthe 21.5 33 0.0011 38.5 1.9 28 288-315 399-426 (435)
57 3fia_A Intersectin-1; EH 1 dom 21.1 1.6E+02 0.0056 27.0 6.2 48 453-500 45-96 (121)
58 1eov_A ASPRS, aspartyl-tRNA sy 20.8 35 0.0012 38.9 1.9 28 288-315 451-478 (487)
59 3ry0_A Putative tautomerase; o 20.5 51 0.0017 26.3 2.3 29 164-192 16-44 (65)
60 1ag7_A Conotoxin GS; neurotoxi 20.4 30 0.001 24.1 0.7 13 123-138 22-34 (34)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=1.7e-196 Score=1716.96 Aligned_cols=635 Identities=28% Similarity=0.452 Sum_probs=577.4
Q ss_pred CCCCCChHHHHHHHHHhhhhCC---CeEecCCCcccCCCCCcccccccccccccccc-cccCCCCccccccccccccccc
Q 003144 54 QVVEWPATKVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCI 129 (844)
Q Consensus 54 ~~~~~~~~eiR~~Fl~fF~~~g---H~~v~ssslvp~~d~~llf~nAGm~qFkp~fl-G~~~p~~p~~~~~r~~~~QkCi 129 (844)
..++||++|||++||+||++|| |++||||||||+|||||||||||||||||||+ |+++|+ ++|+|+|||||
T Consensus 53 ~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp-----~~r~~~~QkCi 127 (752)
T 2zze_A 53 IPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPP-----ANPLVISQPSI 127 (752)
T ss_dssp SSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCS-----SSSEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCC-----CCCccccccce
Confidence 3467999999999999999999 99999999999999999999999999999997 999986 47999999999
Q ss_pred ccCCCCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHH
Q 003144 130 RAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNE 204 (844)
Q Consensus 130 R~gGkhnDld~VG~t~rHhTfFEMLGn~SFg-----dYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E 204 (844)
|+ |||||||+|+||||||||||||||| ||||+|||+|||||||++||||++||+ +
T Consensus 128 R~----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~--~-------------- 187 (752)
T 2zze_A 128 RF----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT--F-------------- 187 (752)
T ss_dssp CC----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE--E--------------
T ss_pred ec----CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchhhee--e--------------
Confidence 97 8999999999999999999999999 999999999999999999999999993 2
Q ss_pred HHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeecccc----------
Q 003144 205 ARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF---------- 274 (844)
Q Consensus 205 ~~~iW~~~~~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~---------- 274 (844)
+||||+|| |||||||||||| + |||||||||||
T Consensus 188 -------------------~dNfW~~G--GpcGPcsEI~~d---g--------------lEiwNlVFmq~~~~~~~~~~~ 229 (752)
T 2zze_A 188 -------------------KENPWAGG--GNAGPAFEVLYR---G--------------LEVATLVFMQYXXAPENAPQD 229 (752)
T ss_dssp -------------------EECCEEET--TEEECEEEEEET---T--------------EEEEEEEEEEEEECCTTCCSC
T ss_pred -------------------ccCcccCC--CCCCCceeEEEC---C--------------Eeeeeeeeeeecccccccccc
Confidence 68999999 999999999997 1 99999999999
Q ss_pred ---ccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCCc
Q 003144 275 ---NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDA 340 (844)
Q Consensus 275 ---~r~~~g~l~~Lp~k~iDTGmGlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~-----------~y~g~~~~~~~ 340 (844)
|| +||+|.|||+||||||||||||||||||++||||| +|.|||++|++++|++ +|.|.++.++.
T Consensus 230 ~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~~ 307 (752)
T 2zze_A 230 QVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDL 307 (752)
T ss_dssp CEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSSS
T ss_pred chhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCCccch
Confidence 88 69999999999999999999999999999999999 9999999999999986 24455553321
Q ss_pred ccc------------------------cchhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCcc
Q 003144 341 DKV------------------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDG 396 (844)
Q Consensus 341 ~~~------------------------~~a~rviaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r~~~~~lg~~~~ 396 (844)
+++ +.++||||||+||++|||+||++|||+|||||||||||||+|+++ +||++.+
T Consensus 308 ~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~~-~lg~~~~ 386 (752)
T 2zze_A 308 GDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLR-ELGLEVP 386 (752)
T ss_dssp SCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHH-HTTCCCC
T ss_pred hhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHHH-HhCCCcc
Confidence 211 468899999999999999999999999999999999999999995 7999999
Q ss_pred chhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCChHHhHHhhcccCCCh
Q 003144 397 FFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFPL 473 (844)
Q Consensus 397 fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~---~~~l~g~~af~Lydt~GfP~ 473 (844)
|++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++ .++|||++||+||||||||+
T Consensus 387 -l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~ 465 (752)
T 2zze_A 387 -LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTP 465 (752)
T ss_dssp -HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCH
T ss_pred -hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccCCCH
Confidence 99999999999999999999999999999999999999999999999999998764 35799999999999999999
Q ss_pred hhHHHHHHHcCceeChh-hHHHHHHHHHHHhHhhhhcccCCcccccHHHHHHHhhcCCCCccccCCcc--cccccceEEE
Q 003144 474 DLTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIK 550 (844)
Q Consensus 474 dlt~~~a~e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d~~~Y~--y~~~~~akVl 550 (844)
|||++||+|+|++||++ +|+++|++||+++|++.. ... .+ ...+. ..|+|+ +.+|+ |..+++|+|+
T Consensus 466 dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~--~~~---~~---~~~~~--~~~~T~-~l~Y~~~yl~~~~a~Vl 534 (752)
T 2zze_A 466 EIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG--EEL---VD---FELLK--DLPDTR-RLYYEDPFMXEFDAXVL 534 (752)
T ss_dssp HHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC---------C---CC---SSSSS--SSCCCE-EHHHHCTTCCEEEEEEE
T ss_pred HHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhccc--ccc---hh---hHHhc--cCCCce-eecccCCccceEEEEEE
Confidence 99999999999999999 899999999998876421 110 00 01111 346675 66776 4478999999
Q ss_pred EEEeCCeeeeeecCCCeEEEEeeceeEEeccCCeeecceeEEeccceEEEEeEEEECCEEEEEEEeecCCccCCCCCEEE
Q 003144 551 AIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVI 630 (844)
Q Consensus 551 ~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~~v~k~~g~i~H~~~~~~~~~~l~~G~~V~ 630 (844)
++.. .+|+||+|+|||||||||+|+|+|..++..+.|.+|++.+|.++|.+.. . +.+++|++|.
T Consensus 535 ~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~-~--~~l~vGd~V~ 598 (752)
T 2zze_A 535 RVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVED-P--GAFXEGMIVH 598 (752)
T ss_dssp EEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESC-G--GGCCTTCEEE
T ss_pred EEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccc-c--CccCcCCeEE
Confidence 9973 3699999999999999999999998776789999999999999999864 3 6789999999
Q ss_pred EEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEE
Q 003144 631 CKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSK 710 (844)
Q Consensus 631 ~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI~~nlpV~~~ 710 (844)
+.|||+||+.+|++|||+|||++||+++||.+++|+|+++.++++||||++..++|++++++||++||++|++|+||++.
T Consensus 599 ~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~ 678 (752)
T 2zze_A 599 GXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWE 678 (752)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEE
T ss_pred EEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCcccee
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EcCHHHHHhhcCccccc--CCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeeccCC
Q 003144 711 EATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAK 788 (844)
Q Consensus 711 ~~~~eEA~~~~g~r~~f--ge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~~k 788 (844)
+++++||+++++.+ +| +++|.+.||||+|+ ++++++||||||+|||+||.|+|++++++++
T Consensus 679 ~~s~eEA~~~~~~~-lf~~ge~ygd~VRVV~IG----------------d~svelCGGTHV~nTgeIG~fKIls~s~i~~ 741 (752)
T 2zze_A 679 WLPRTTAEQXYGFR-LYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIXILRTERIQD 741 (752)
T ss_dssp EEEHHHHHHHHCGG-GCSSCCCCSSEEEEEEET----------------TTEEEECCSCCCSBGGGGCCEEEEEEEEEET
T ss_pred ecCHHHHhhcchhh-hhcCCCCCCCeEEEEEEC----------------CceeCCCCCCccCCHhHccEEEEEEEEEEcC
Confidence 99999999986654 45 67788999999998 6899999999999999999999999999999
Q ss_pred CeEEEEEEeCh
Q 003144 789 GIRRITAVTTG 799 (844)
Q Consensus 789 gv~RI~~vtG~ 799 (844)
|++||+++||.
T Consensus 742 GvrRIeavtG~ 752 (752)
T 2zze_A 742 GVERIIFACGE 752 (752)
T ss_dssp TEEEEEEEECC
T ss_pred CEEEEEEEeCC
Confidence 99999999994
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.3e-184 Score=1616.19 Aligned_cols=624 Identities=28% Similarity=0.458 Sum_probs=569.3
Q ss_pred CCCCChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccccc-cccCCCCcccccccccccccccccCC
Q 003144 55 VVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGG 133 (844)
Q Consensus 55 ~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~fl-G~~~p~~p~~~~~r~~~~QkCiR~gG 133 (844)
.++|+++|||++|++||++|||+++|||||||+||||||||||||+||||||+ |..+|+ +.|+|++|||||+
T Consensus 57 ~~~~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft~agm~~fkp~~~~g~~~p~-----~~~~~~~Q~ciR~-- 129 (739)
T 2ztg_A 57 KKPFELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPP-----ANPLTISQPCIRL-- 129 (739)
T ss_dssp SSCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCS-----SSSEEEEEEEECG--
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCCceeeecChhhCcHhHhCCCCCCC-----CCCcccccccccC--
Confidence 35699999999999999999999999999999999999999999999999997 999886 4799999999998
Q ss_pred CCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHH
Q 003144 134 KHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDI 208 (844)
Q Consensus 134 khnDld~VG~t~rHhTfFEMLGn~SFg-----dYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~i 208 (844)
|||||||+|+||||||||||||||| ||||+|||+|||||| ++|||||+|| |+
T Consensus 130 --~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l-~~~g~~~~~i--~~------------------ 186 (739)
T 2ztg_A 130 --DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL-NELGVKKEDI--VY------------------ 186 (739)
T ss_dssp --GGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHH-HHHTCCGGGC--EE------------------
T ss_pred --cccccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHHH-HHhCCCHHHe--ee------------------
Confidence 7999999999999999999999999 999999999999999 8899999988 22
Q ss_pred HHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccc-----
Q 003144 209 WLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLK----- 283 (844)
Q Consensus 209 W~~~~~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~----- 283 (844)
+||||+|| |||||||||||| | |||||+|||||||+++|++.
T Consensus 187 ---------------~dnfW~~g--Gp~Gpc~Ei~~d---g--------------~EiwnlVfmq~~r~~~g~~~~~~~~ 232 (739)
T 2ztg_A 187 ---------------KEEPWAGG--GNAGPCLEAIVG---G--------------LEVATLVFMNLEEHPEGDIEIKGAR 232 (739)
T ss_dssp ---------------EEEEEEET--TEEEEEEEEEET---T--------------EEEEEEEEEEEEECTTCCEEETTEE
T ss_pred ---------------ccCcccCC--CCCCCeeEEEEC---C--------------EEeeeeeeEEeeecCCCceeecCcc
Confidence 68999999 999999999997 2 99999999999999999998
Q ss_pred --cCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC----------------CCCCCCCCCCccccc-
Q 003144 284 --PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR----------------PYSGKVGADDADKVD- 344 (844)
Q Consensus 284 --~Lp~k~iDTGmGlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~----------------~y~g~~~~~~~~~~~- 344 (844)
|||+|+||||||||||||+|||++||||| +|.|||++|++++|++ +|+|+++.++.++++
T Consensus 233 y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~y~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~ 311 (739)
T 2ztg_A 233 YRKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQ 311 (739)
T ss_dssp EEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCSSCTTCHHHHHHHHHHHHHHHHHTTCCTHHHHH
T ss_pred ccCCCCCeEecCcCHHHHHHHHcCCCchHHh-hHHHHHHHHHHHhCCCccccccchhhhhhhhhhcccccCcccchhHHH
Confidence 99999999999999999999999999999 9999999999999975 233444433322111
Q ss_pred -----------------------chhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHHHhhhCCCccchhhh
Q 003144 345 -----------------------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGL 401 (844)
Q Consensus 345 -----------------------~a~rviaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r~~~~~lg~~~~fl~~l 401 (844)
.++||||||+||++|||+||++|||+|||||||||||||+|++ ++||++.+ |++|
T Consensus 312 ~~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~l 389 (739)
T 2ztg_A 312 LRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA-EELELGLD-LYDL 389 (739)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHH-HHTTCSSC-HHHH
T ss_pred HHHHhhhhcccchhhhhhhccccceEEEEecHHHHHHHHhccCcccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHH
Confidence 4788999999999999999999999999999999999999999 57999999 9999
Q ss_pred HHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHhHHhhcccCCChhhHHHHHH
Q 003144 402 VNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAE 481 (844)
Q Consensus 402 v~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~~~~l~g~~af~Lydt~GfP~dlt~~~a~ 481 (844)
|++|++.|++ ||.++++.|++||+.||++|.+||++|+++|+++++++++ |||++||+||||||||+|||++||+
T Consensus 390 v~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~--l~g~~af~LyDTyGfP~dlt~~ia~ 464 (739)
T 2ztg_A 390 VEMHKKILGF---EFDVPLSTVQEILELEKERYRTTVSKGTRLVERLVERKKK--LEKDDLIELYDSHGIPVELAVGIAA 464 (739)
T ss_dssp HHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSB--CCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9999999999 9999999999999999999999999999999999988753 9999999999999999999999999
Q ss_pred HcCceeChh-hHHHHHHHHHHHhHhhhhcccCCcccccHHHHHHHhhcCCCCccccCCcc--cccccceEEEEEEeCCee
Q 003144 482 ERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEF 558 (844)
Q Consensus 482 e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d~~~Y~--y~~~~~akVl~i~~~~~~ 558 (844)
|+|++||++ +|+++|++||++||++. . . + + .+. ...|+|+ +.+|+ |..+++|+|+++..
T Consensus 465 e~g~~vd~~~~F~~~m~~q~~~a~~~~-~--~-----~---~-~~~-~~~~~T~-~l~Y~~~y~~~~~a~Vl~i~~---- 526 (739)
T 2ztg_A 465 EKGAEVEMPKDIYAELAKRHSKAEKVQ-E--K-----K---I-TLQ-NEYPATE-KLYYDDPTLLEFEAEVIGVEG---- 526 (739)
T ss_dssp HTTCBCCCCTTHHHHHHHTTSBCCCCC-C--C-----C---C-CCS-SCCCCCE-ECTTTCTTCCEEEEEEEEEET----
T ss_pred HcCCeeCCcccHHHHHHHHHHHHhhcc-c--c-----c---h-hhh-ccCCCce-eecccCCcccEEEEEEEEEEc----
Confidence 999999999 89999999998886531 1 1 1 0 111 1246675 77787 34789999999973
Q ss_pred eeeecCCCeEEEEeeceeEEeccCCeeecceeEEeccceEEEEeEEEECCEEEEEEEeecCCccC-CCCCEEEEEeChhH
Q 003144 559 IESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRF-SVGEEVICKVDYDR 637 (844)
Q Consensus 559 v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~~v~k~~g~i~H~~~~~~~~~~l-~~G~~V~~~VD~er 637 (844)
.+|+||+|+|||||||||+|+|+|..++..+.|.+|++.+|.++|.+. +.+ ++|++|.+.|||+|
T Consensus 527 ---------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~-----~~~~~~Gd~V~~~VD~~r 592 (739)
T 2ztg_A 527 ---------DFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVK-----GAKPEVGTKVKGVIDSDV 592 (739)
T ss_dssp ---------TEEEESEECCCCSBTTBCCCCEEEEETTEEEEECEEEEETTEEEEECC-----SSCCCTTCEEEEEECHHH
T ss_pred ---------CEEEEeCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEc-----ccCCCCCCEEEEEEcHHH
Confidence 369999999999999999999999877678999999999999999875 344 69999999999999
Q ss_pred HhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHH
Q 003144 638 RKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEA 717 (844)
Q Consensus 638 R~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI~~nlpV~~~~~~~eEA 717 (844)
|..+|++|||+|||++||+++||.+++|.||++.++++||||++..++|++++++||++||++|++|+||++.+++++||
T Consensus 593 R~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA 672 (739)
T 2ztg_A 593 RWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEA 672 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HhhcCccccc-CCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeeccCCCeEEEEEE
Q 003144 718 KCINGLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAV 796 (844)
Q Consensus 718 ~~~~g~r~~f-ge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~~kgv~RI~~v 796 (844)
+++++.+.+. ++++.+.||||+|+ + ++++||||||+|||+||.|+|++++++++|++||+++
T Consensus 673 ~~~~~l~L~~~~~~~~d~VRVV~IG----------------d-~~elCGGTHV~nTgeIg~fkIls~s~i~~GvrRIeav 735 (739)
T 2ztg_A 673 ERKFGFRLYQGGVPPGRKIRVVQVG----------------D-DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFA 735 (739)
T ss_dssp HHHHCGGGGTTCCCCSSEEEEEEET----------------T-EEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEE
T ss_pred HHhCCHhhhcCCCCCCCeEEEEEEC----------------C-eeeCcCCcCcccHhHcCcEEEEEEeEEcCCEEEEEEE
Confidence 9987665443 56677899999998 4 8999999999999999999999999999999999999
Q ss_pred eCh
Q 003144 797 TTG 799 (844)
Q Consensus 797 tG~ 799 (844)
||.
T Consensus 736 tG~ 738 (739)
T 2ztg_A 736 AGE 738 (739)
T ss_dssp ESC
T ss_pred ecC
Confidence 996
No 3
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=2.7e-175 Score=1437.34 Aligned_cols=424 Identities=50% Similarity=0.895 Sum_probs=405.4
Q ss_pred CChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCC
Q 003144 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (844)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~flG~~~p~~p~~~~~r~~~~QkCiR~gGkhnD 137 (844)
++++|||++||+||++|||++||||||||+|||||||||||||||||||+|+++|+ ++|+|||||||||||||||
T Consensus 2 ~~~~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~~~sQkCiR~gGKHnD 76 (441)
T 3hy0_A 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRN-----YSRATTSQRCVRAGGKHND 76 (441)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCC-----CCCccccccceecCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999886 6899999999999999999
Q ss_pred CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcc--cccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc--C
Q 003144 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLT--KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--L 213 (844)
Q Consensus 138 ld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt--~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~--~ 213 (844)
|||||+|+|||||||||||||||||||+|||+||||||| ++|||||+|||||||++ |+||++||++. |
T Consensus 77 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~~--------D~Ea~~iW~~~~Gv 148 (441)
T 3hy0_A 77 LENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYES--------DDEAYEIWEKEVGI 148 (441)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETT--------CHHHHHHHHHTTCC
T ss_pred HHhhCCCCccccceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeCC--------CHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999 67999999999999984 99999999995 9
Q ss_pred CCCCcccCC-------CCCCcccCCCCCCCcCceeEEeecCCCC--CCCCCCCCCCCceEEEeeeeccccccCCCCcccc
Q 003144 214 PASRVLPFG-------CKDNFWEMGDTGPCGPCSEIHYDRTGNR--DAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284 (844)
Q Consensus 214 ~~~~I~~~~-------~~dNfW~mG~~GpcGPcsEI~yd~~~~~--~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~ 284 (844)
|++||+++| .+||||+||++||||||||||||||+.. ...+.+++|+||||||||||||||||+++|+|.|
T Consensus 149 p~~rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~p 228 (441)
T 3hy0_A 149 PRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEP 228 (441)
T ss_dssp CGGGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEE
T ss_pred CHHHeeecCccccccccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCCCcccc
Confidence 999999999 8999999999999999999999997422 1223568999999999999999999999999999
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcccccchhhhhhhhhhheeeeecCC
Q 003144 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADG 364 (844)
Q Consensus 285 Lp~k~iDTGmGlERl~~vlqg~~snydtd~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~a~rviaDH~R~~~~~i~DG 364 (844)
||+||||||||||||||||||++||||||+|.|||+++++++|.. | ..++|+||||||+||++|||+||
T Consensus 229 Lp~k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-~----------~~~~s~rvIADH~R~~~f~iaDG 297 (441)
T 3hy0_A 229 LPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGAT-D----------LSNKSLRVIADHIRSCAFLIADG 297 (441)
T ss_dssp EEEEEEEEEEEHHHHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCC-C----------TTCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCceecCCCHHHHHHHHcCCCccccchhHHHHHHHHHHHhCCC-c----------cccceeEEecchHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999975 3 23789999999999999999999
Q ss_pred CccCCCCcchHHHHHHHHHHHHHHhhhCCCccchhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003144 365 SCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEK 444 (844)
Q Consensus 365 ~~Psn~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~ 444 (844)
|+|||+|||||||||||||+|+++ +||++.+||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++
T Consensus 298 v~PsNeGrGYVLRRilRRAvr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~ 376 (441)
T 3hy0_A 298 VMPSNENRGYVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLAL 376 (441)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHH-HHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cccCCCCcchhHHHHHHHHHHHHH-HhCCCCccHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999995 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCChHHhHHhhcccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhh
Q 003144 445 FKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSA 506 (844)
Q Consensus 445 ~~~~~~~~~~~~l~g~~af~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~ 506 (844)
|++++++.+.++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++
T Consensus 377 l~~~~~~~~~~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~rar~~ 438 (441)
T 3hy0_A 377 LDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438 (441)
T ss_dssp HHHHHHSCCSSEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhc
Confidence 99999877657899999999999999999999999999999999999999999999999875
No 4
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=5.3e-174 Score=1434.77 Aligned_cols=423 Identities=48% Similarity=0.895 Sum_probs=405.0
Q ss_pred CChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCCC
Q 003144 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (844)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~flG~~~p~~p~~~~~r~~~~QkCiR~gGkhnD 137 (844)
|+++|||++||+||++|||++||||||||+|||||||||||||||||||+|+++|+ ++|+|+||||||+||||||
T Consensus 3 ~~~~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~t~sQkCiRag~~hND 77 (465)
T 1yfs_A 3 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHND 77 (465)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCC-----CCceeccccccccCCCccc
Confidence 89999999999999999999999999999999999999999999999999999887 5899999999999999999
Q ss_pred CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhc--CCC
Q 003144 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPA 215 (844)
Q Consensus 138 ld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~--~~~ 215 (844)
|||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++ |+||++||++. ||+
T Consensus 78 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~--------D~Ea~~iW~~~~G~p~ 149 (465)
T 1yfs_A 78 LEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIPS 149 (465)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETT--------CHHHHHHHHTTTCCCG
T ss_pred HhhcCCCCCccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCHHHeEEEEeCC--------CHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999999999999984 99999999996 999
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCch
Q 003144 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (844)
Q Consensus 216 ~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTGmG 295 (844)
+||+++|.+||||+||++||||||||||||+|++++ ++||||||||||||||||++||+|.|||+||||||||
T Consensus 150 ~rI~~~g~~dNFW~mG~tGPCGPCsEI~yD~g~~~~-------~~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmG 222 (465)
T 1yfs_A 150 ERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYE-------GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMG 222 (465)
T ss_dssp GGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTSC-------HHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred HHeeeCCCcCCcccCCCCcCCCCCeEEEEccCCCCC-------CCCCEEEeeeeeeeEEEecCCCccccCCCCceecCcC
Confidence 999999999999999999999999999999987643 2789999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcccccchhhhhhhhhhheeeeecCCCccCCCCcchH
Q 003144 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (844)
Q Consensus 296 lERl~~vlqg~~snydtd~f~pli~~i~~~~~~~~y~g~~~~~~~~~~~~a~rviaDH~R~~~~~i~DG~~Psn~grgYv 375 (844)
||||||||||++||||||+|.|||++|++++|++ |.. + +..|+|+||||||+||++|||+||++|||+|||||
T Consensus 223 LERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-Y~~----~--~~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGYV 295 (465)
T 1yfs_A 223 LERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGE----K--FETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295 (465)
T ss_dssp HHHHHHHHTTCSSGGGSTTTHHHHHHHHHHHCCC-TTS----C--HHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHH
T ss_pred HHHHHHHHcCCCccchhhhHHHHHHHHHHHhCCC-CCC----C--cccceeEEEEcchhhhhhhhhccccccCCCCcchH
Confidence 9999999999999999999999999999999985 632 2 35688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCccchhhhHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 003144 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-- 453 (844)
Q Consensus 376 lRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~-- 453 (844)
||||||||+|+|+ +||++.+||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++
T Consensus 296 LRRilRRavr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~ 374 (465)
T 1yfs_A 296 IRRILRRAMRFGY-KLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEE 374 (465)
T ss_dssp HHHHHHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999995 6999999999999999999999999999999999999999999999999999999999998864
Q ss_pred -CCCCChHHhHHhhcccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhh
Q 003144 454 -GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQN 508 (844)
Q Consensus 454 -~~~l~g~~af~Lydt~GfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~ 508 (844)
+++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++
T Consensus 375 ~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar~~~~ 430 (465)
T 1yfs_A 375 GRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFK 430 (465)
T ss_dssp TCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTTTC--
T ss_pred CCCcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHHhhhh
Confidence 2369999999999999999999999999999999999999999999999998754
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=2.8e-52 Score=438.97 Aligned_cols=223 Identities=23% Similarity=0.287 Sum_probs=203.7
Q ss_pred ccccccceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEeccCCeeecceeEEeccceEEEEeEEEECCEEEEEEEeecC
Q 003144 540 IWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEG 619 (844)
Q Consensus 540 ~y~~~~~akVl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~~v~k~~g~i~H~~~~~~~ 619 (844)
.|..+++|+|+++..+ ++.+.|+||+|+|||||||||+|+|+|. .++|.+|++.+|.++|++.
T Consensus 11 ~y~~~~~a~V~~~~~~---------~~~~~vvLd~T~FYpegGGQ~~D~G~i~----~~~V~~v~~~~g~i~H~~~---- 73 (241)
T 3kew_A 11 QYIKEFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLID----GIKVLDVYEEEGKVYHVLE---- 73 (241)
T ss_dssp TTCCEEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEET----TEEEEEEEEETTEEEEEES----
T ss_pred cccceeEEEEEEEEec---------CCeEEEEEeCCcccCCCCCCCCCEEEEe----eEEEEEEEEeCCEEEEEEC----
Confidence 4678999999999853 3457899999999999999999999993 4899999999999999974
Q ss_pred CccCCCCCEEEEEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHH
Q 003144 620 AGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNE 699 (844)
Q Consensus 620 ~~~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNe 699 (844)
+++++|++|.+.|||+||+++|++|||+|||++||+++||.+ +.|+++.++++||||+ .++|++++++||++||+
T Consensus 74 -~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~lt~e~l~~IE~~vn~ 148 (241)
T 3kew_A 74 -KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GFLDEKTIREAEKEANR 148 (241)
T ss_dssp -SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SCCCHHHHHHHHHHHHH
T ss_pred -CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC--CCCCHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999987 5899999999999999 68999999999999999
Q ss_pred HHHcCCCeEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEE
Q 003144 700 QIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFA 779 (844)
Q Consensus 700 iI~~nlpV~~~~~~~eEA~~~~g~r~~fge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fk 779 (844)
+|++|+||++.+++++||+++ +++++ +++|++.||||+|+ +++.++||||||+|||+||.|+
T Consensus 149 ~I~~~~pV~~~~~~~~eA~~~-~~~~~-~e~~~~~VRvv~ig----------------~~~~~~CgGtHV~~TgeIg~fk 210 (241)
T 3kew_A 149 LIFENLEVKSYAPSKKELKKV-KTRRA-LPKTDEEIRIVEIV----------------GLDLNACCGVHPRNTRDLQVIK 210 (241)
T ss_dssp HHHHTCBEEEECCCTTTTTTC-CCSSC-CCCCSSCCCEEEET----------------TTEEEECCSCCCSBSGGGCCEE
T ss_pred HHHcCCCEEEEEcCHHHHHhc-Chhhc-CCccCCcEEEEEEC----------------CeEEEcCCCCCcCCHhhcCCEE
Confidence 999999999999999999987 46664 56788999999998 6899999999999999999999
Q ss_pred EEeeeccCCCeEEEEEEeChHHHH
Q 003144 780 LLSEEGIAKGIRRITAVTTGLAYK 803 (844)
Q Consensus 780 I~~~s~~~kgv~RI~~vtG~~A~~ 803 (844)
|++.+++ +|.+||+++||.+|++
T Consensus 211 I~~~~~~-~~~~RI~~~~G~~a~~ 233 (241)
T 3kew_A 211 IRRWEKH-KNATRIEYVAGNRAVS 233 (241)
T ss_dssp EEEEEEE-TTEEEEEEEEGGGGC-
T ss_pred EEEEecc-CCcEEEEEEECHHHHh
Confidence 9999997 4567999999999875
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=7.6e-48 Score=399.26 Aligned_cols=200 Identities=29% Similarity=0.385 Sum_probs=181.8
Q ss_pred ccccccceEEEEEEeCCeeeeeecCCCeEEEEeeceeEEeccCCeeecceeEEeccceEEEEeEEEE-CCEEEEEEEeec
Q 003144 540 IWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFVIHIGSLTE 618 (844)
Q Consensus 540 ~y~~~~~akVl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~~v~k~-~g~i~H~~~~~~ 618 (844)
.|..+++|+|+++.. .+|+||+|||||||||||+|+|+|. + ++|.+|++. +|.++|.+.. .
T Consensus 13 ~y~~~~~a~V~~~~~-------------~~vvld~T~Fype~GGQ~~D~G~i~---~-~~V~~v~~~~~~~i~H~~~~-~ 74 (216)
T 2e1b_A 13 AYLKEAKGRVLEIRD-------------NAILLDQTIFYPTGGGQPHDRGTIN---G-VEVLDVYKDEEGNVWHVVKE-P 74 (216)
T ss_dssp TTCCEEEECBCCCCS-------------SCCCBSCCCSCCCCTTCCCCCEEET---T-EEEEEEECCTTCCCEEEESC-G
T ss_pred cccceeeEEEEEEeC-------------CEEEEeCCCccCCCCCCCCCEEEEc---c-EEEEEEEECcCCEEEEEEcc-C
Confidence 467889999998821 1599999999999999999999995 3 999999997 9999999863 2
Q ss_pred CCccCCCCCEEEEEeChhHHhHHHHHhhHHHHHHHHHHHhhCCc-eeeccccccCCceEEEecCCCCCCHHHHHHHHHHH
Q 003144 619 GAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDH-VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIV 697 (844)
Q Consensus 619 ~~~~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~-v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~m 697 (844)
+.+++|++|.+.|||+||+++|++|||+|||++||+++||.+ ..+.|+++.++++||||+++.+++++ +++||++|
T Consensus 75 --~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~e-l~~IE~~v 151 (216)
T 2e1b_A 75 --EKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIISLF 151 (216)
T ss_dssp --GGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHHHH
T ss_pred --CCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCCCCHH-HHHHHHHH
Confidence 678999999999999999999999999999999999999983 34569999999999999988889987 99999999
Q ss_pred HHHHHcCCCeEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEECCcccccccCCCCccccCceEeeccCccccccccccc
Q 003144 698 NEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 777 (844)
Q Consensus 698 NeiI~~nlpV~~~~~~~eEA~~~~g~r~~fge~y~d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~ 777 (844)
|++|++|+||++.++++ +|+|+|+ +++.++||||||+|||+||.
T Consensus 152 n~~I~~~~pv~~~~~~~--------------------vRvv~ig----------------~~~~~~CgGtHV~~TgeIg~ 195 (216)
T 2e1b_A 152 NKYVDEGGEVKIWWEGD--------------------RRYTQIR----------------DFEVIPCGGTHVKDIKEIGH 195 (216)
T ss_dssp HHHHHHCCBEEEEESSS--------------------CEEEEET----------------TSCEECCCSCCCSBGGGTCC
T ss_pred HHHHhcCCCEEEEEcCC--------------------EEEEEEC----------------CEEEECCCCCCcccHhhCce
Confidence 99999999999887764 8999998 67899999999999999999
Q ss_pred EEEEeeeccCCCeEEEEEE
Q 003144 778 FALLSEEGIAKGIRRITAV 796 (844)
Q Consensus 778 fkI~~~s~~~kgv~RI~~v 796 (844)
|+|++.+++++|++||++.
T Consensus 196 fkI~~~~~~~~g~rRi~~~ 214 (216)
T 2e1b_A 196 IKKLKRSSIGRGKQRLEMW 214 (216)
T ss_dssp EEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEeEEcCCEEEEEEE
Confidence 9999999999999999986
No 7
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.95 E-value=1.5e-27 Score=283.53 Aligned_cols=194 Identities=16% Similarity=0.230 Sum_probs=163.4
Q ss_pred cCCCCCEEEEEeChhHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHH
Q 003144 622 RFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQI 701 (844)
Q Consensus 622 ~l~~G~~V~~~VD~erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI 701 (844)
++..+.+|+..-..+.+...+++|||+|||++|++++||.+..+.|+.+ ++|+||||+++.++|++++.+||++||++|
T Consensus 52 ~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~~t~edl~~IE~~m~~iI 130 (645)
T 1nyr_A 52 PLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQNISSDDFEQIEKTMKQIV 130 (645)
T ss_dssp CCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSCCCSTTHHHHHHHHHHHH
T ss_pred ccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 3444444554444556788999999999999999999999989999877 999999999888999999999999999999
Q ss_pred HcCCCeEEEEcCHHHHHhhcCcc----cccCCcCC-CCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccc
Q 003144 702 KAELDVFSKEATLAEAKCINGLR----AVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAE 776 (844)
Q Consensus 702 ~~nlpV~~~~~~~eEA~~~~g~r----~~fge~y~-d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg 776 (844)
++|+||++.+++++||+++++.. .+...... +.||+++++ + +.++||||||+|||+||
T Consensus 131 ~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g----------------~-~~dlC~G~Hv~~Tg~i~ 193 (645)
T 1nyr_A 131 NENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQG----------------D-FTDLCRGVHVPSTAKIK 193 (645)
T ss_dssp HTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEET----------------T-EEEECCSCCCSCGGGCC
T ss_pred HhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCCCCeeEEEEEC----------------C-EEEecCCcccCCCCCCc
Confidence 99999999999999999987521 11111111 479999997 3 48999999999999999
Q ss_pred cEEEEeeec-------cCCCeEEEEEEeChHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhcccccc
Q 003144 777 AFALLSEEG-------IAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCSSGYFSL 837 (844)
Q Consensus 777 ~fkI~~~s~-------~~kgv~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~f~f~l 837 (844)
.|+|+++++ .++.++||++++.+. .+.+.++++.++++.++||++|++++++|.|+-
T Consensus 194 ~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~----~~~l~~~~~~l~ea~~rdhr~lg~~l~l~~~~~ 257 (645)
T 1nyr_A 194 EFKLLSTAGAYWRGDSNNKMLQRIYGTAFFD----KKELKAHLQMLEERKERDHRKIGKELELFTNSQ 257 (645)
T ss_dssp EEEEEEEEEEETTSCSSSCEEEEEEEEEESS----HHHHHHHHHHHHHHHHTCHHHHHHHTTCEEEET
T ss_pred eEEEeeeCchHHHHHhHHHHHHHHHHHhcCC----HHHhhhhhhhhhhhhhhhHHHHhhhcceEEecc
Confidence 999999974 467899999998763 357788899999999999999999999998874
No 8
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.95 E-value=3.6e-27 Score=245.52 Aligned_cols=169 Identities=18% Similarity=0.297 Sum_probs=139.3
Q ss_pred EECCEEEEEEEeecCCccCCCCCEEEEEeChhHH-hHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCC
Q 003144 605 IYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRR-KLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGK 683 (844)
Q Consensus 605 k~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~erR-~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~ 683 (844)
+.+|.+++. . .++..|+.|+. |+++.+ ...|++|||+|||++|++++||......| ++.++|+||||+++.
T Consensus 39 kvNg~l~dL----~--~~l~~~~~ve~-it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~g-~~~~~g~y~d~~~~~ 110 (224)
T 1tke_A 39 RVNGELVDA----C--DLIENDAQLSI-ITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIG-PVIDNGFYYDVDLDR 110 (224)
T ss_dssp EETTEEEET----T--CCBCSCEEEEE-ECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC-CEETTEEEEEEECSS
T ss_pred EECCEEecc----c--eEcCCCCeEEE-EecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEEC-CccCCeEEEEEeCCC
Confidence 347777663 1 46777888874 666544 58899999999999999999986444456 555899999999888
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHhhcCc------ccccCC-c-CCCCEEEEEECCcccccccCCCCcc
Q 003144 684 PVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVFGE-V-YPDPVRVVAIGRKVEDLLADPENKE 755 (844)
Q Consensus 684 ~lt~E~L~~IE~~mNeiI~~nlpV~~~~~~~eEA~~~~g~------r~~fge-~-y~d~VRVV~Ig~~~~~~l~~~~~~~ 755 (844)
++|+++|.+||++||++|++|+||++.+++++||++++.. ..++++ . +.+.||+++++
T Consensus 111 ~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g-------------- 176 (224)
T 1tke_A 111 TLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHE-------------- 176 (224)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEET--------------
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeC--------------
Confidence 9999999999999999999999999999999999997643 223433 3 45689999997
Q ss_pred ccCceEeeccCcccccccccccEEEEeeecc-------CCCeEEEEEEeC
Q 003144 756 WLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTT 798 (844)
Q Consensus 756 ~~~~~~elCgGTHV~nTgeIg~fkI~~~s~~-------~kgv~RI~~vtG 798 (844)
+ +.++||||||+|||+||.|+|+++++. ++.++|||+++.
T Consensus 177 --~-~~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a~ 223 (224)
T 1tke_A 177 --E-YVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAW 223 (224)
T ss_dssp --T-EEEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEEC
T ss_pred --C-EEEECCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEecc
Confidence 3 589999999999999999999998774 677999999975
No 9
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.94 E-value=1.7e-26 Score=273.94 Aligned_cols=192 Identities=18% Similarity=0.271 Sum_probs=159.5
Q ss_pred cCCCCCEEEEEeCh-hHHhHHHHHhhHHHHHHHHHHHhhCCceeeccccccCCceEEEecCCCCCCHHHHHHHHHHHHHH
Q 003144 622 RFSVGEEVICKVDY-DRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQ 700 (844)
Q Consensus 622 ~l~~G~~V~~~VD~-erR~~~m~~HTAtHLL~aALr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNei 700 (844)
++..+.+|+ -|++ +.+...+++|||+|||++|++++||....+.|+.+ ++|+||||++..++|++++.+||++||++
T Consensus 50 ~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i-~~gfy~Df~~~~~~t~edl~~IE~~m~~i 127 (642)
T 1qf6_A 50 LIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVI-DNGFYYDVDLDRTLTQEDVEALEKRMHEL 127 (642)
T ss_dssp CBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEE-TTEEEEEEECSSCCCHHHHHHHHHHHHHH
T ss_pred ccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCcc-CCeeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 344444444 2333 35788999999999999999999988666899766 58999999988899999999999999999
Q ss_pred HHcCCCeEEEEcCHHHHHhhcCc------cccc-CCcCC-CCEEEEEECCcccccccCCCCccccCceEeeccCcccccc
Q 003144 701 IKAELDVFSKEATLAEAKCINGL------RAVF-GEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNT 772 (844)
Q Consensus 701 I~~nlpV~~~~~~~eEA~~~~g~------r~~f-ge~y~-d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nT 772 (844)
|++|+||++.+++++||++++.. ..+. ++.++ +.||++++| + +.++|+||||+||
T Consensus 128 I~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g----------------~-~~dlC~GpHv~~T 190 (642)
T 1qf6_A 128 AEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHE----------------E-YVDMCRGPHVPNM 190 (642)
T ss_dssp HHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEET----------------T-EEECCSSCCCSBG
T ss_pred HHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEEC----------------C-EEEecCCCccCCC
Confidence 99999999999999999998643 1122 22222 479999997 3 4799999999999
Q ss_pred cccccEEEEeeecc-------CCCeEEEEEEeChHHHHHHHHHHHHHHHHHHhhccCcchHHHhhhccccc
Q 003144 773 REAEAFALLSEEGI-------AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKVCSSGYFS 836 (844)
Q Consensus 773 geIg~fkI~~~s~~-------~kgv~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~l~k~~~~f~f~ 836 (844)
|+||.|+|++.++. +..++||++++.+ ..+.++++++.++++..++|++|++++++|.|+
T Consensus 191 g~I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~~----~~~~l~~~~~~~eea~~rdH~~lg~~l~l~~~~ 257 (642)
T 1qf6_A 191 RFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA----DKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQ 257 (642)
T ss_dssp GGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEECS----SHHHHHHHHHHHHHHHTTCHHHHHHHTTCEECC
T ss_pred CcceeEEEeeeccccccCccCCceeEeeeccccC----chhHHhhhhhhhhccccCCHHHHHHhcCccccc
Confidence 99999999999883 5568999999765 456778899999999999999999999999887
No 10
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.93 E-value=1.2e-25 Score=221.39 Aligned_cols=144 Identities=21% Similarity=0.191 Sum_probs=118.9
Q ss_pred HHHHHhhHHHHHHHHHHHhhCCceeecc-ccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHH
Q 003144 640 LIAPNHTCTHMLNFALREVLGDHVDQKG-SVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAK 718 (844)
Q Consensus 640 ~~m~~HTAtHLL~aALr~vlg~~v~q~G-s~v~~d~~r~Df~~~~~lt~E~L~~IE~~mNeiI~~nlpV~~~~~~~eEA~ 718 (844)
..|++|||+|||++|++++||.+..+.+ ..+.++++|+||+.+.++|++++.+||++||++|++|+||++.+++++||.
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA~ 83 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAE 83 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 5799999999999999999995444444 455556888998877789999999999999999999999999999999999
Q ss_pred hhcCcccccCCcCC---CCEEEEEECCcccccccCCCCccccCceEeeccCcccccccccccEEEEeeec-cCCCeEEEE
Q 003144 719 CINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEG-IAKGIRRIT 794 (844)
Q Consensus 719 ~~~g~r~~fge~y~---d~VRVV~Ig~~~~~~l~~~~~~~~~~~~~elCgGTHV~nTgeIg~fkI~~~s~-~~kgv~RI~ 794 (844)
++++...+-.+..| +.||+++|+ +++.++||||||+|||+||.|+|++.++ .+++..||.
T Consensus 84 ~~f~~~~~~~~~~~~~~~~vrv~~ig----------------~~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~ 147 (157)
T 1v4p_A 84 KMFGEDMYDLFPVPEDVRILKVVVIE----------------DWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIH 147 (157)
T ss_dssp HHHGGGGSCSSCCCTTCCEEEEEEET----------------TTEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEE
T ss_pred HhhCccccccccCCCCCCeEEEEEEC----------------CeeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEEE
Confidence 98765422112223 469999998 6789999999999999999999999876 345666888
Q ss_pred EEeCh
Q 003144 795 AVTTG 799 (844)
Q Consensus 795 ~vtG~ 799 (844)
+..++
T Consensus 148 ~~v~~ 152 (157)
T 1v4p_A 148 FELLE 152 (157)
T ss_dssp EEEC-
T ss_pred EEEee
Confidence 88764
No 11
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=96.17 E-value=0.022 Score=59.47 Aligned_cols=183 Identities=19% Similarity=0.240 Sum_probs=107.6
Q ss_pred CCCCC-CCCCChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccc-cccccCCCCccccccccccccc
Q 003144 50 GADPQ-VVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQK 127 (844)
Q Consensus 50 ~~~~~-~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~-flG~~~p~~p~~~~~r~~~~Qk 127 (844)
+.+.| +..|+-.+|--+--+|..++|..++-++.+= .|--.|-|. ||..-.|. | -+++-+|+
T Consensus 16 ~~~~~~~~~~~fQ~iIl~Lq~fWa~qGC~i~QPyD~E-----------vGAGT~hPaTfLRalGpe-P----w~~AYVqP 79 (311)
T 3rf1_A 16 ENLYFQSNAMTFSQMILNLQNYWQEQGCAIMQPYDMP-----------AGAGTFHPATFLRSLGKK-P----WAAAYVAP 79 (311)
T ss_dssp -CCCCGGGSCCHHHHHHHHHHHHHTTTCEECCCCSSC-----------CSSGGGSHHHHTTTSSSS-C----EEEEEEEE
T ss_pred ccceeccCcCcHHHHHHHHHHHHHHCCCEEECCcccc-----------ccCCCCCHHHHHHhcCCC-c----ceeeeecc
Confidence 33445 3568999999999999999999998877642 234478885 55544442 1 37899999
Q ss_pred cccc-CCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHH
Q 003144 128 CIRA-GGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEAR 206 (844)
Q Consensus 128 CiR~-gGkhnDld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~ 206 (844)
|-|. -|+.-+=+| --.||.=|..+=--|-.+ ..+.=.+-| +.+||||..
T Consensus 80 sRRP~DGRYGeNPN---RLq~yyQfQVilKPsP~n-----iQeLYL~SL-~alGId~~~--------------------- 129 (311)
T 3rf1_A 80 SRRPTDGRYGENPN---RLGAYYQFQVLIKPSPDN-----IQELYLKSL-ENLGFDLKS--------------------- 129 (311)
T ss_dssp EECGGGCCTTCCSS---CCSEEEEEEEEEESCCTT-----HHHHHHHHH-HHTTCCGGG---------------------
T ss_pred CCCCCCCCcCCCch---hhhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc---------------------
Confidence 9997 233333222 234555565544444433 111111222 245666543
Q ss_pred HHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCC
Q 003144 207 DIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLP 286 (844)
Q Consensus 207 ~iW~~~~~~~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp 286 (844)
|=||| .+|| ||-=--|--|===|+--| | +||=- |+=|.+- .| + ++.
T Consensus 130 ----------HDIRF-VEDn-WEsPTLGAWGLGWEVWld---G--------------MEVTQ--FTYFQQv-GG-i-~c~ 175 (311)
T 3rf1_A 130 ----------HDIRF-VEDN-WESPSLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQV-GG-I-AVD 175 (311)
T ss_dssp ----------SCEEE-EECC-EEETTTTEEEEEEEEEET---T--------------EEEEE--EEEEEEE-TT-E-ECS
T ss_pred ----------cCeeE-eccC-CCCCcccccccceEEEEc---C--------------eeEee--eeeeeee-CC-c-ccc
Confidence 33444 2455 543112444444555533 1 56642 3334443 23 3 344
Q ss_pred CCccccCchHHHHHHHHhCCCCCccc
Q 003144 287 AKHVDTGLGFERLTSILQNKMSNYDT 312 (844)
Q Consensus 287 ~k~iDTGmGlERl~~vlqg~~snydt 312 (844)
.-.+.-=+||||||+.|||+.|+||.
T Consensus 176 pv~~EITYGLERlamylQ~vd~vyDl 201 (311)
T 3rf1_A 176 LVSAEITYGLERIAMYLQNVDNVYDI 201 (311)
T ss_dssp SCCEEEEEEHHHHHHHHTTCSSGGGS
T ss_pred ccceeeehhHHHHHHHHhCCCeeeec
Confidence 44667789999999999999999986
No 12
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=87.85 E-value=2 Score=44.91 Aligned_cols=175 Identities=20% Similarity=0.289 Sum_probs=102.1
Q ss_pred CChHHHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccccc-cccccCCCCccccccccccccccccc-CCCC
Q 003144 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRA-GGKH 135 (844)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~-flG~~~p~~p~~~~~r~~~~QkCiR~-gGkh 135 (844)
|--.+|--+--+|..++|..++-++.+= .|--.|-|. ||..-.|. | -+++-+|+|.|. -|+.
T Consensus 13 ~~fQ~iIl~Lq~fWa~~GC~i~QpyD~E-----------vGAGT~~PaTfLRaLGpe-p----w~~AYVqPsRRP~DGRY 76 (298)
T 1j5w_A 13 MYLQDVIMKLNDFWASKGCLLEQPYDME-----------VGAGTFHPATFFGSLRKG-P----WKVAYVQPSRRPTDGRY 76 (298)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCSSC-----------CSSGGGSHHHHTGGGCSS-C----EEEEEEEEEECCC----
T ss_pred HHHHHHHHHHHHHHHHCCCEEEcCcccc-----------cccccCCHHHHHHhcCCC-c----ceeeeeccCCCCCCCCc
Confidence 5577888899999999999998877652 244577884 44443332 1 378999999998 2222
Q ss_pred CCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhcCCC
Q 003144 136 NDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPA 215 (844)
Q Consensus 136 nDld~VG~t~rHhTfFEMLGn~SFgdYfK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~~~~ 215 (844)
-+=+| --.||.=|..+=--|-.+ ..+.=.+-| +.+||||..
T Consensus 77 GeNPN---RLq~y~QfQVilKPsP~n-----iQeLYL~SL-~alGid~~~------------------------------ 117 (298)
T 1j5w_A 77 GENPN---RLQRYFQYQVIIKPSPEN-----SQELYLESL-EYLGINLKE------------------------------ 117 (298)
T ss_dssp -CCTT---CCSEEEEEEEEEESCCSS-----HHHHHHHHH-HHTTCCTTT------------------------------
T ss_pred CCCch---hhhhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc------------------------------
Confidence 22222 235666666554445443 111111112 235666543
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCch
Q 003144 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (844)
Q Consensus 216 ~~I~~~~~~dNfW~mG~~GpcGPcsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~r~~~g~l~~Lp~k~iDTGmG 295 (844)
|=||| .+|| ||-=--|.-|===|+--| | +||=- |+=|.+- .| + ++..-.+.-=+|
T Consensus 118 -HDIRF-VEDn-WEsPTLGAwGLGWEVWld---G--------------MEITQ--FTYFQQv-GG-i-~c~pv~~EITYG 172 (298)
T 1j5w_A 118 -HDIRF-VEDN-WESPTLGAWGVGWEVWLD---G--------------MEITQ--FTYFQQI-GG-I-SLKDIPLEITYG 172 (298)
T ss_dssp -SCEEE-EEEC-CEEGGGTEEEEEEEEEET---T--------------EEEEE--EEEEEEB-TT-B-CCSSCCEEEEEE
T ss_pred -CCcee-eccC-CCCCccccccccceeeEc---c--------------eeeeh--hhhhhhc-CC-c-ccCccceeeccc
Confidence 33444 2555 542112455545666543 1 67653 3333443 23 2 344456777899
Q ss_pred HHHHHHHHhCCCCCccc
Q 003144 296 FERLTSILQNKMSNYDT 312 (844)
Q Consensus 296 lERl~~vlqg~~snydt 312 (844)
|||||+.|||+.|.||.
T Consensus 173 LERiamylQ~vd~vydl 189 (298)
T 1j5w_A 173 LERIAMYLQGVDNVYEV 189 (298)
T ss_dssp HHHHHHHHHTCSSGGGC
T ss_pred HHHHHHHHhCCCceecc
Confidence 99999999999999996
No 13
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=67.71 E-value=6.8 Score=43.96 Aligned_cols=110 Identities=17% Similarity=0.223 Sum_probs=63.8
Q ss_pred hHHHHHHHHHhhhhCCCeEecCCCcccCCCCCccccccc--------ccccc--cccc-ccc------------CCCCcc
Q 003144 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG--------MNQYK--PIFL-GTA------------DPNTQL 116 (844)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAG--------m~qFk--p~fl-G~~------------~p~~p~ 116 (844)
-..|.+.++++|.++|+..|-.-.+++.. +|..+| |..|. .++| .+. ....++
T Consensus 175 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~----l~~~sG~~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~L 250 (425)
T 2dq3_A 175 ERALINFMLDLHTKKGYKEICPPHLVKPE----ILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEENL 250 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHH----HHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHH----HHHhcCCCCcChhhheEecCCeEEEcCCCcHHHHHHHHhhccccccC
Confidence 34667778888998999999876666521 222222 11121 1222 111 111111
Q ss_pred cccccccccccccccCCCCCCCCCCCCCC----Ccchhhhhccccccccc-----cHHHHHHHHHHHcccccCCC
Q 003144 117 SKLTRACNTQKCIRAGGKHNDLDDVGKDT----YHHTFFEMLGNWSFGDY-----FKNEAIEWAWELLTKVYRLP 182 (844)
Q Consensus 117 ~~~~r~~~~QkCiR~gGkhnDld~VG~t~----rHhTfFEMLGn~SFgdY-----fK~eai~~awe~Lt~~l~l~ 182 (844)
.-|.+-.++|.|- ....-|++. |=|- |.|..-++|+.= .-+|.+.++.++|. .||||
T Consensus 251 --Plrl~~~g~~FR~-----E~~~~Gr~~~Gl~R~re-F~q~E~~~f~~pe~s~~~~~e~i~~~~~il~-~LGL~ 316 (425)
T 2dq3_A 251 --PIYLTAYTPCYRR-----EAGAYGKDIRGIIRQHQ-FDKVELVKIVHPDTSYDELEKLVKDAEEVLQ-LLGLP 316 (425)
T ss_dssp --CEEEEEEEEEECC-----CCSCCSSSCSSSSSCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-HHTCC
T ss_pred --CeEEEEecCEecC-----CCCcccccccCcccccc-eEEeeEEEECCHHHHHHHHHHHHHHHHHHHH-HCCCc
Confidence 1478888999994 544334332 3333 456677888732 22678999999996 59998
No 14
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=64.98 E-value=3.1 Score=37.69 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 163 fK~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
-|++-++-.-++|.++||+||+|+||.|++
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEe
Confidence 367777888899999999999999999975
No 15
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=62.62 E-value=22 Score=40.91 Aligned_cols=53 Identities=9% Similarity=0.127 Sum_probs=35.0
Q ss_pred cccc-cccccccCCCCCCCCC--CCCCCCcchhhhhccccccccc-----cHHHHH-HHHHHHcccccCCC
Q 003144 121 RACN-TQKCIRAGGKHNDLDD--VGKDTYHHTFFEMLGNWSFGDY-----FKNEAI-EWAWELLTKVYRLP 182 (844)
Q Consensus 121 r~~~-~QkCiR~gGkhnDld~--VG~t~rHhTfFEMLGn~SFgdY-----fK~eai-~~awe~Lt~~l~l~ 182 (844)
|++. .++|.| |. .- -|.. |=|- |+|..-++|++- +-++.+ .++++|+. .||||
T Consensus 346 rl~q~ig~~FR-----~E-pgs~~GL~-R~RE-F~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~-~LGLp 407 (522)
T 2cja_A 346 KVFDRSGTSHR-----YE-SGGIHGIE-RVDE-FHRIEIVWIGTKEEVLKCAEELHDRYMHIFND-ILDIE 407 (522)
T ss_dssp EEEECSSEEEC-----CC-SSSCCCTT-SCSE-EEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHH-TSCCC
T ss_pred eEEEEcCceEe-----CC-CCCCCCCe-EeEE-EEEeeEEEEeChHHHHHHHHHHHHHHHHHHHH-HcCCC
Confidence 6777 889999 45 32 2222 3333 678888999841 224457 88888885 59999
No 16
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=59.11 E-value=4.9 Score=37.75 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-.+-.-++|.+.|||||+|+||.|++
T Consensus 94 n~~~s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 94 PEKVTSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 56666777799999999999999999975
No 17
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=58.55 E-value=4.8 Score=36.53 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-.+---++|.+.||+||+|+||.|++
T Consensus 72 n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 72 NRSYSKLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 55556667788999999999999999985
No 18
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=57.15 E-value=5.7 Score=35.67 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 163 fK~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
-|++-++-..++|.+.||++|+|+||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 72 EPEKVTSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 477788888899999999999999999975
No 19
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=57.04 E-value=5.2 Score=36.60 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
+++-.+---++|.+.||+|++|+||.|+.
T Consensus 73 n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 73 NRSHSAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 44455666788999999999999999975
No 20
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=54.45 E-value=6 Score=37.15 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-.+-.-++|.+.||+||+|+||.|++
T Consensus 94 n~~~s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 94 PKMMTPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 55556677789999999999999999975
No 21
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=52.75 E-value=6.4 Score=37.09 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-.+---++|.+.||+||+|+||.|++
T Consensus 94 n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 94 NPSISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp CHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred CchHHHHHHHHHHHhcccCccEEEEEecc
Confidence 55556667789999999999999999975
No 22
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=51.85 E-value=7.7 Score=35.65 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 163 fK~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
-|++-++-..++|.+.||+||+++||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 72 NNSLLADKITKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp THHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 478888888999999999999999999976
No 23
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=50.66 E-value=7.7 Score=34.78 Aligned_cols=29 Identities=14% Similarity=0.401 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-++-..++|.+.||+||+|+||++.+
T Consensus 72 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 72 NRDHSAKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 67778888899999999999999999986
No 24
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=50.44 E-value=7.7 Score=34.92 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-++-..++|.+.||+||+|+||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 73 TQEVSELVCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 77778888899999999999999999986
No 25
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=49.04 E-value=8.3 Score=35.02 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-++-..++|.+.||+||+|+||.+.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 73 NIRHTQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 67778888899999999999999999986
No 26
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=48.96 E-value=8.4 Score=34.67 Aligned_cols=29 Identities=28% Similarity=0.613 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-++-..++|.+.||+||+|+||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 73 NKSYTKLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 67778888899999999999999999986
No 27
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=42.44 E-value=12 Score=35.36 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcC----C-CCCcHHHHHHHHhcCCCC
Q 003144 163 FKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKA----G-LAPDNEARDIWLKFLPAS 216 (844)
Q Consensus 163 fK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~----g-l~~D~E~~~iW~~~~~~~ 216 (844)
-|++-++-..+.|.+.+|+|++++||++.+=+... | +.+|....+.|.+-+|++
T Consensus 77 qk~~l~~~l~~~l~~~lgi~~~~v~V~i~E~~~~~wg~gG~~~~~~g~e~~W~~~~~~~ 135 (148)
T 3n4h_A 77 QKEELLLRLTQEIALILGIPNEEVWVYITEIPGSNMTEYGRLLMEPGEEEKWFNSLPEG 135 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGCCCSSCC-----------------
T ss_pred HHHHHHHHHHHHHHHHhCcCcCcEEEEEEEcCHHHeeECCEECCCCcchHHHHHhCcHH
Confidence 37777888889999999999999999998643311 2 455666666777666653
No 28
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=42.20 E-value=10 Score=40.41 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhhhhCCCeEecCCCcccCCCCCccccc-----cccccc----ccccccccCCCC-----ccccccccccc
Q 003144 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFAN-----AGMNQY----KPIFLGTADPNT-----QLSKLTRACNT 125 (844)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~n-----AGm~qF----kp~flG~~~p~~-----p~~~~~r~~~~ 125 (844)
-+.|.+.+-+||.++|...|..--+.+.+| ++-.. |=|.++ ++++|-+. |.- -.+...|+-..
T Consensus 18 rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~--~~~~~~~~e~a~~f~~~~~~~~~~L~~S-pe~~~~~l~~~g~~rvf~i 94 (294)
T 1nnh_A 18 QTKILEYMTDFFVKEGFKWLLPVIISPITD--PLWPDPAGEGMEPAEVEIYGVKMRLTHS-MILHKQLAIAMGLKKIFVL 94 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCCEESCCC--CCCSCTTCCCCCCCEEEETTEEEEECSC-SHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEccc--hhccCCCCCcceeEEEEcCCCCEEeccC-hHHHHHHHhhcCccceEEE
Confidence 456778888999999998887544444311 11111 112221 12333211 100 00124578888
Q ss_pred ccccccCCCCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHHccccc
Q 003144 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLTKVY 179 (844)
Q Consensus 126 QkCiR~gGkhnDld~VG~t~rHhTfFEMLGn-~SFgdYfK~eai~~awe~Lt~~l 179 (844)
-+|.|. +=+.. .++||..=|-|++- .+|.|| +|.+..+.+|+...+
T Consensus 95 g~~FR~-----E~pq~-~~~RH~~EFtqle~e~~~~~~--~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 95 SPNIRL-----ESRQK-DDGRHAYEFTQLDFEVERAKM--EDIMRLIERLVYGLF 141 (294)
T ss_dssp EEEECC-----CCGGG-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHH
T ss_pred EccEeC-----CCCCC-CCCccccceeEEEEEecCCCH--HHHHHHHHHHHHHHH
Confidence 999995 42112 24699877877764 444564 688888888887553
No 29
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=40.77 E-value=14 Score=28.92 Aligned_cols=30 Identities=10% Similarity=0.023 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 163 fK~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
-|++-++-..+.|.+.+|+|++++||.+.+
T Consensus 15 qk~~l~~~i~~~l~~~lg~~~~~v~V~i~e 44 (61)
T 2opa_A 15 QKRNLVEKVTEAVKETTGASEEKIVVFIEE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 366667777888999999999999999875
No 30
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=40.63 E-value=14 Score=28.95 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 163 fK~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
-|++-++-..+.|.+.+|+|++++||.+.+
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e 44 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLERVRVLITE 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 366667778888999999999999999875
No 31
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=38.34 E-value=19 Score=28.47 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-++-.-+.|.+.+|+|++++||.+.+
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 55566777788888999999999999876
No 32
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=36.38 E-value=28 Score=27.68 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-++-.-+.+.+.+|+|++.++|.+.+
T Consensus 15 K~~L~~~it~~~~~~lg~~~~~v~V~i~E 43 (62)
T 3m20_A 15 KREFVERLTSVAAEIYGMDRSAITILIHE 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 66667777788888999999999999876
No 33
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=35.66 E-value=39 Score=27.99 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHh
Q 003144 163 FKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 211 (844)
Q Consensus 163 fK~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~ 211 (844)
-|++-++-.-+.|.+.||+|++++||.+.+ .++++=+. +|..
T Consensus 16 qk~~L~~~l~~~l~~~lgip~~~v~V~i~e------~~~~~w~~-v~~~ 57 (76)
T 1gyx_A 16 QKAALAADITDVIIRHLNSKDSSISIALQQ------IQPESWQA-IWDA 57 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE------CCGGGHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCceEEEEEEE------eChHHEEE-EEch
Confidence 356667777888989999999999999986 34555566 6643
No 34
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=31.03 E-value=29 Score=28.02 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-++-..+.|.+.+|+|++.+||.+.+
T Consensus 19 K~~l~~~lt~~l~~~lg~p~~~v~V~i~e 47 (67)
T 3m21_A 19 KQQLIEGVSDLMVKVLNKNKASIVVIIDE 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 66667777888889999999999999875
No 35
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=30.33 E-value=18 Score=24.72 Aligned_cols=10 Identities=60% Similarity=1.427 Sum_probs=7.5
Q ss_pred CCCCCCcCce
Q 003144 231 GDTGPCGPCS 240 (844)
Q Consensus 231 G~~GpcGPcs 240 (844)
|++||-|||.
T Consensus 19 gppgppgpcc 28 (31)
T 4gyx_A 19 GPPGPPGPCC 28 (31)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCc
Confidence 5678888884
No 36
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=29.76 E-value=26 Score=32.08 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 163 fK~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
-|++-++-..+.|.+.||+||+++||.+.+
T Consensus 74 qK~~l~~~l~~~l~~~lg~~~~~v~V~i~e 103 (128)
T 1mww_A 74 TKKRLIKMLFSELEYKLGIRAHDVEITIKE 103 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 367777888888999999999999999976
No 37
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=28.62 E-value=1e+02 Score=27.27 Aligned_cols=48 Identities=21% Similarity=0.195 Sum_probs=39.9
Q ss_pred cCCCCChHHhHHhhcccCCChhhHHHHHHHcCc----eeChhhHHHHHHHHH
Q 003144 453 QGKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEAR 500 (844)
Q Consensus 453 ~~~~l~g~~af~Lydt~GfP~dlt~~~a~e~g~----~vd~~~f~~~~~~~~ 500 (844)
+.+.|+++++-.++.+.|+|.+.+.+|.++... .+|.++|..+|..-.
T Consensus 27 ~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~~ 78 (106)
T 1eh2_A 27 VNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVY 78 (106)
T ss_dssp SSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHHH
T ss_pred CCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHH
Confidence 467999999999999999999988888876543 488899999987643
No 38
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=27.84 E-value=46 Score=37.88 Aligned_cols=99 Identities=20% Similarity=0.338 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccc------cccccccCC-C-Ccc--ccccccccccccccc
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK------PIFLGTADP-N-TQL--SKLTRACNTQKCIRA 131 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFk------p~flG~~~p-~-~p~--~~~~r~~~~QkCiR~ 131 (844)
.|-+.+-+||.++|...|..--+.+.. +.+|-..|+ +++|-+.+- . --+ +.+.|+-..-+|.|.
T Consensus 183 ~i~~~ir~~~~~~gF~EV~TPil~~~~------~~~ga~~f~~~~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~ 256 (487)
T 1eov_A 183 GVCELFREYLATKKFTEVHTPKLLGAP------SEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRA 256 (487)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC------SSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEEEec------CCCCcccceeccCCccEEcccChHHHHHHHHhcCCCceEEEeccEec
Confidence 455666889999998888655454421 122222222 333332210 0 000 124577778899996
Q ss_pred CCCCCCCCCCCCCCCcchhhhhccc-cccc-cccHHHHHHHHHHHcc
Q 003144 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELLT 176 (844)
Q Consensus 132 gGkhnDld~VG~t~rHhTfFEMLGn-~SFg-dYfK~eai~~awe~Lt 176 (844)
. +. .++||..=|-||+- .||| || +|.++.+-+++.
T Consensus 257 E-------~~-~~~Rh~pEFt~le~e~af~~~~--~dlm~l~E~ll~ 293 (487)
T 1eov_A 257 E-------NS-NTHRHMTEFTGLDMEMAFEEHY--HEVLDTLSELFV 293 (487)
T ss_dssp C-------CC-CCTTCCSEEEEEEEEEECSSCT--HHHHHHHHHHHH
T ss_pred C-------CC-CCCccchhhhhhhhhhhhhcCH--HHHHHHHHHHHH
Confidence 2 22 36799988999987 7898 57 566666655554
No 39
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=26.96 E-value=31 Score=31.73 Aligned_cols=29 Identities=10% Similarity=0.003 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-++-.-+.|.+.+|++|+++||.+.+
T Consensus 81 K~~l~~~l~~~l~~~lg~~~~~v~I~i~e 109 (131)
T 2aal_A 81 KVCFYKLLTGALERDCGISPDDVIVALVE 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 77888888899999999999999999976
No 40
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=26.77 E-value=23 Score=38.54 Aligned_cols=103 Identities=15% Similarity=0.226 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccCCCCCccccccccccccccccc-------ccC-CCCc--------cccccccccc
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLG-------TAD-PNTQ--------LSKLTRACNT 125 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFkp~flG-------~~~-p~~p--------~~~~~r~~~~ 125 (844)
+|-+.+-+||.++|-..|..--|.+.... .|+..+|+-.|.| ..- +.+| .+.+.|+-..
T Consensus 41 ~i~~~iR~ff~~~gF~EVeTPiL~~~~~~-----~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqI 115 (345)
T 3a5y_A 41 AIMAEIRRFFADRGVLEVETPCMSQATVT-----DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQL 115 (345)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCCC-----CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEecCCC-----CCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCcEEEE
Confidence 45566778999999988875444442211 1233444432221 000 1111 0234677788
Q ss_pred ccccccCCCCCCCCCCCCCCCcchhhhhcc-ccccccccHHHHHHHHHHHcccccC
Q 003144 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTKVYR 180 (844)
Q Consensus 126 QkCiR~gGkhnDld~VG~t~rHhTfFEMLG-n~SFgdYfK~eai~~awe~Lt~~l~ 180 (844)
-||.|.. +. |.||..=|-||- -.+|.|| ++.++.+=++|..+++
T Consensus 116 g~~FR~E-------~~--~~rH~pEFt~lE~e~af~d~--~d~m~~~E~li~~v~~ 160 (345)
T 3a5y_A 116 CRSFRNE-------EM--GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLD 160 (345)
T ss_dssp EEEECCC-------CC--BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHHC
T ss_pred EcceeCC-------CC--cccccchhheeeeeeeCCCH--HHHHHHHHHHHHHHHc
Confidence 8999962 33 789999888885 4567776 5566666666665554
No 41
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=26.45 E-value=35 Score=27.99 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-++-..+.+.+.+|+|++.+||.+.+
T Consensus 17 K~~L~~~it~~l~~~lg~p~~~v~V~i~e 45 (72)
T 3mb2_A 17 KAELARALSAAAAAAFDVPLAEVRLIIQE 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 66667777888889999999999999865
No 42
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=24.75 E-value=37 Score=26.23 Aligned_cols=29 Identities=3% Similarity=-0.107 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-++-..+.|.+.+|+|++++||.+.+
T Consensus 19 k~~l~~~l~~~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 19 LKNLVSEVTDAVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55556777788889999999999999875
No 43
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=24.01 E-value=28 Score=39.03 Aligned_cols=101 Identities=16% Similarity=0.287 Sum_probs=54.8
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccCC-CC--Cccccccccccc-ccccccccCCCCc----ccccccccccccccccCC
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPVN-DP--TLLFANAGMNQY-KPIFLGTADPNTQ----LSKLTRACNTQKCIRAGG 133 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~-d~--~llf~nAGm~qF-kp~flG~~~p~~p----~~~~~r~~~~QkCiR~gG 133 (844)
+|-+.+-+||.++|-..|..--+.+.. .+ .++-|+. | ++++|-+. |.-. .+.+.|+-..-+|.|.
T Consensus 139 ~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~----~~~~~~L~~S-pql~~~~~~~g~~rvf~ig~~FR~-- 211 (429)
T 1wyd_A 139 LALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIY----FGKEAFLAQS-PQLYKELMAGVVERVFEVAPAWRA-- 211 (429)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEE----TTEEEEECSC-CHHHHHHHHHHHSEEEEEEEEECC--
T ss_pred HHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEec----CCceEEecCC-cHHHHHHHHhCcCceEEEcccccc--
Confidence 566778899999998888665554421 11 1111111 1 23344211 1100 0013567778899996
Q ss_pred CCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHHccc
Q 003144 134 KHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLTK 177 (844)
Q Consensus 134 khnDld~VG~t~rHhTfFEMLGn-~SFgdYfK~eai~~awe~Lt~ 177 (844)
+ +. .++||..=|-|+.- .+|.|| +|.+..+.+++..
T Consensus 212 ---E--~~-~~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 248 (429)
T 1wyd_A 212 ---E--ES-DTPFHLAEFISMDVEMAFADY--NDVMQLLEKILHN 248 (429)
T ss_dssp ---C--CC-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred ---c--CC-ccccccceeeEeeeeecCCCH--HHHHHHHHHHHHH
Confidence 3 11 24699877777753 455565 5566666555443
No 44
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=23.94 E-value=82 Score=34.19 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=22.9
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 003144 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (844)
Q Consensus 288 k~iDTGmGlERl~~vlqg~~snydtd~f 315 (844)
+|=--|+|+|||++++-|.+|.=|+=+|
T Consensus 313 PhgG~glGiDRLvmll~g~~~IRdVi~F 340 (345)
T 3a5y_A 313 DCSGVALGVDRLVMLALGAETLAEVIAF 340 (345)
T ss_dssp SEEEEEEEHHHHHHHHHTCSSGGGGSSS
T ss_pred CCcEEEEcHHHHHHHHcCCCcHheEecC
Confidence 4555699999999999999998776444
No 45
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=23.63 E-value=1.1e+02 Score=26.35 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=38.8
Q ss_pred cCCCCChHHhHHhhcccCCChhhHHHHHHHcCc----eeChhhHHHHHHHH
Q 003144 453 QGKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEA 499 (844)
Q Consensus 453 ~~~~l~g~~af~Lydt~GfP~dlt~~~a~e~g~----~vd~~~f~~~~~~~ 499 (844)
+.+.|+.+++-.+..+.|+|-+.+.+|.++... .||.++|..+|...
T Consensus 24 ~dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 24 NTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV 74 (99)
T ss_dssp TSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 357999999999999999999888888877443 48889999998654
No 46
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=23.61 E-value=29 Score=39.09 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=23.5
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 003144 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (844)
Q Consensus 288 k~iDTGmGlERl~~vlqg~~snydtd~f 315 (844)
+|=--|+|+|||++++-|.+|.=|+=+|
T Consensus 402 P~~G~GlGidRLvm~l~g~~~Irdvi~F 429 (438)
T 3nem_A 402 PHGGFGLGAERLIKQMLDLPNIREVILF 429 (438)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCGGGGSSS
T ss_pred CceEEEEhHHHHHHHHhCCCcHHHcccC
Confidence 3667799999999999999998777554
No 47
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=23.09 E-value=30 Score=38.70 Aligned_cols=103 Identities=15% Similarity=0.230 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhhCCCeEecCCCcccC-CCC--Ccccccc-cccccccccccccCCCCc----ccccccccccccccccC
Q 003144 61 TKVRDTFFKFFEDKNHVNWKSSPVVPV-NDP--TLLFANA-GMNQYKPIFLGTADPNTQ----LSKLTRACNTQKCIRAG 132 (844)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~-~d~--~llf~nA-Gm~qFkp~flG~~~p~~p----~~~~~r~~~~QkCiR~g 132 (844)
++|.+.+-+||.++|...|..--+.+. ..+ .++-|+. | ++++|-+. |.-. .+.+.|+-..-+|.|.
T Consensus 129 s~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~~g----~~~~L~~S-pel~~~~l~~g~~rvf~ig~~FR~- 202 (422)
T 1n9w_A 129 AALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFE----KRAYLAQS-PQLYKQIMVGVFERVYEVAPVWRM- 202 (422)
T ss_dssp HHHHHHHHHHHHHTTCEECCCC---------------------------------CHHHHHHHHHHHSEEEEEEEC----
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEeeCC----CcEEeeeC-HHHHHHHHhhCCCceeEEeCceEC-
Confidence 356778889999999988875444332 111 1122211 1 22333211 1000 0113577788899996
Q ss_pred CCCCCCCCCCCCCCcchhhhhccc-cccc-cccHHHHHHHHHHHcccc
Q 003144 133 GKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELLTKV 178 (844)
Q Consensus 133 GkhnDld~VG~t~rHhTfFEMLGn-~SFg-dYfK~eai~~awe~Lt~~ 178 (844)
+ +. .++||..=|-|++- .+|. || +|.++.+.+++...
T Consensus 203 ----E--~~-~~~RH~pEFtqle~e~~~~~d~--~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 203 ----E--EH-HTSRHLNEYLSLDVEMGFIADE--EDLMRLEEALLAEM 241 (422)
T ss_dssp -----------------CCEEEEEEEESCSSH--HHHHHHHHHHHHHH
T ss_pred ----C--CC-CCCcccceeEEeeeeeeCCCCH--HHHHHHHHHHHHHH
Confidence 2 22 24699977777764 4555 65 66777776665543
No 48
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=22.72 E-value=31 Score=39.76 Aligned_cols=99 Identities=11% Similarity=0.203 Sum_probs=56.0
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccc--------cccccccCCCC----ccccccccccccccc
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK--------PIFLGTADPNT----QLSKLTRACNTQKCI 129 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFk--------p~flG~~~p~~----p~~~~~r~~~~QkCi 129 (844)
+|-+.+-+||.++|-..|..--+.+.. ..|+--+|. +++|-+.+--. -.+.+.|+-..-+|.
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~------gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~F 254 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIP------GGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQF 254 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC------CSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccC------CCccccceeeecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcce
Confidence 344567789999998888665454421 122222332 34443321000 002256777888999
Q ss_pred ccCCCCCCCCCCCCCCCcchhhhhcc-cccccccc-----HHHHHHHHHHHc
Q 003144 130 RAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYF-----KNEAIEWAWELL 175 (844)
Q Consensus 130 R~gGkhnDld~VG~t~rHhTfFEMLG-n~SFgdYf-----K~eai~~awe~L 175 (844)
|.- ++ ++||..=|-||- -++|.||- -++-|.++|+-+
T Consensus 255 R~E-------~~--~trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v 297 (521)
T 3bju_A 255 RNE-------GI--DLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHI 297 (521)
T ss_dssp CCS-------CC--BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCC-------CC--CCccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 962 33 348998888875 56788873 344455555544
No 49
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=22.49 E-value=31 Score=39.06 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=22.6
Q ss_pred ccccCchHHHHHHHHhCCCCCcccccc
Q 003144 289 HVDTGLGFERLTSILQNKMSNYDTDVF 315 (844)
Q Consensus 289 ~iDTGmGlERl~~vlqg~~snydtd~f 315 (844)
+=--|+|+|||++++-|.+|.=|+=+|
T Consensus 421 ~gG~GlGidRLvm~ltg~~~Irdvi~F 447 (456)
T 3m4p_A 421 HGGYGLGVERLVMWLLGEDHIRKVCLY 447 (456)
T ss_dssp EEEEEEEHHHHHHHHHTCSCGGGGSSS
T ss_pred ccEEEEcHHHHHHHHcCCccHHHeecc
Confidence 456799999999999999998777444
No 50
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=22.27 E-value=93 Score=30.28 Aligned_cols=51 Identities=20% Similarity=0.510 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcccccCCCCCceEEEEeCCCCcCCCCCcHHHHHHHHhcCCCCCcccCCCCCCcccC---CCCCCCcCce
Q 003144 165 NEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEM---GDTGPCGPCS 240 (844)
Q Consensus 165 ~eai~~awe~Lt~~l~l~~~rL~vT~~~gd~~~gl~~D~E~~~iW~~~~~~~~I~~~~~~dNfW~m---G~~GpcGPcs 240 (844)
+-|-+||.+ .|++.+.| -.+++++.|.+...+ ...-|||.- .++..|||..
T Consensus 107 ~GA~~fA~~-----~G~~~~~l--------------~t~~~~~~~~~~~~~------~~qpn~~~nv~p~~~~~cgpy~ 160 (162)
T 1apy_A 107 ESATTFAQS-----MGFINEDL--------------STSASQALHSDWLAR------NCQPNYWRNVIPDPSKYCGPYK 160 (162)
T ss_dssp HHHHHHHHH-----TTCCCCCC--------------CCHHHHHHHHHHHHT------TSCSCCBCSCBSCTTTCCSCCB
T ss_pred HHHHHHHHH-----cCCCcccc--------------CCHHHHHHHHHHHHh------ccCCCccccCCCCCCCCCCCCC
Confidence 557777766 67776544 256788888765211 245699964 2356699853
No 51
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=21.94 E-value=32 Score=39.84 Aligned_cols=87 Identities=16% Similarity=0.257 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccc------cccccccCCCC----ccccccccccccccccc
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK------PIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFk------p~flG~~~p~~----p~~~~~r~~~~QkCiR~ 131 (844)
+|-+.+-+||.++|-..|..--+.+. ++ .+|-..|+ +++|-+.+--. -.+.+.|+-..-+|.|.
T Consensus 249 ~i~~~iR~ff~~~gF~EVeTPiL~~~-~~-----egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~ 322 (548)
T 3i7f_A 249 ACCGLFREFLTSQKFVEIHTPKLIGC-SS-----EGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRA 322 (548)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSBC-------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCC
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEecc-cC-----CCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEec
Confidence 45556679999999888865545542 11 23334442 33443321000 00125677778899996
Q ss_pred CCCCCCCCCCCCCCCcchhhhhcccc-ccc-cc
Q 003144 132 GGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DY 162 (844)
Q Consensus 132 gGkhnDld~VG~t~rHhTfFEMLGn~-SFg-dY 162 (844)
. + . .|.||.+=|.||--. +|+ ||
T Consensus 323 E----~---~-~t~RHl~EFtmlE~e~af~~d~ 347 (548)
T 3i7f_A 323 E----N---S-NTRRHLTEFEGLDIEMEIVENY 347 (548)
T ss_dssp S----C---C-CSSSCCSCEEEEEEEEECSSCT
T ss_pred C----C---C-CCCCcchhhhchhhhhhhhcCH
Confidence 2 2 2 368999889998764 787 56
No 52
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=21.80 E-value=33 Score=38.51 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccC-CCCCccccccccccc----ccccccccCC---CCcccccccccccccccccCC
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPV-NDPTLLFANAGMNQY----KPIFLGTADP---NTQLSKLTRACNTQKCIRAGG 133 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~-~d~~llf~nAGm~qF----kp~flG~~~p---~~p~~~~~r~~~~QkCiR~gG 133 (844)
.|-+.+-+||.++|-..|..--+.+. ..+ ++-|..+ ++++|-+.+- ..-.+.+.|+-..-+|.|.
T Consensus 140 ~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~-----~~~~f~~~~~~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~-- 212 (434)
T 1x54_A 140 TLIMAAREWLLKDGWHEVFPPILVTGAVEG-----GATLFKLKYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRA-- 212 (434)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCSSC-----GGGCCEEEETTEEEEECSCSHHHHHHHHHHHSEEEEEEEEECC--
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEeecCCC-----CceeEEEeecCCcEEeccChHHHHHHHhcCccceEEEecceec--
Confidence 55667889999999988876555442 122 1111111 1233332110 0000123578888999996
Q ss_pred CCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHHccc
Q 003144 134 KHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLTK 177 (844)
Q Consensus 134 khnDld~VG~t~rHhTfFEMLGn-~SFgdYfK~eai~~awe~Lt~ 177 (844)
+ +. .++||..=|-|++- .+|.|| +|.+..+.+++..
T Consensus 213 ---E--~~-~~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 249 (434)
T 1x54_A 213 ---E--KS-RTRRHLTEFWHLELEAAWMDL--WDIMKVEEELVSY 249 (434)
T ss_dssp ---C--CC-CCSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred ---C--CC-CCcccccEEEEeeEEEcCCCH--HHHHHHHHHHHHH
Confidence 3 11 24689877777663 455565 6677766666544
No 53
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=21.69 E-value=33 Score=39.36 Aligned_cols=103 Identities=16% Similarity=0.265 Sum_probs=53.9
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccCCCC--Cccccccccccc-ccccccccCCCC----cccccccccccccccccCCC
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDP--TLLFANAGMNQY-KPIFLGTADPNT----QLSKLTRACNTQKCIRAGGK 134 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~d~--~llf~nAGm~qF-kp~flG~~~p~~----p~~~~~r~~~~QkCiR~gGk 134 (844)
.|-+.+-+||.++|-..|..--+.+..-. .=.|+-- .+.| ++++|-+++--. -.+.+.|+-..-+|.|.
T Consensus 188 ~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~-~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~--- 263 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRN--- 263 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECC---
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec-cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccC---
Confidence 45566778999999888765444432100 0012110 0111 223343221000 00124577778899996
Q ss_pred CCCCCCCCCCCCcchhhhhcc-ccccccccHHHHHHHHHHHcc
Q 003144 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLT 176 (844)
Q Consensus 135 hnDld~VG~t~rHhTfFEMLG-n~SFgdYfK~eai~~awe~Lt 176 (844)
- +. ++||..=|-||. -.+|.|| ++.++.+-+++.
T Consensus 264 -E---~~--~~rH~pEFt~lE~e~af~d~--~dlm~l~E~li~ 298 (504)
T 1e1o_A 264 -E---GI--SVRHNPEFTMMELYMAYADY--HDLIELTESLFR 298 (504)
T ss_dssp -C---CC--CC-CCSEEEEEEEEEESCCH--HHHHHHHHHHHH
T ss_pred -C---CC--CccccCceeeeeeeecCCCH--HHHHHHHHHHHH
Confidence 2 33 359999888887 4677787 455555555544
No 54
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=21.62 E-value=33 Score=39.22 Aligned_cols=104 Identities=13% Similarity=0.279 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhhhCCCeEecCCCcccCCCC--Cccccccccccc-ccccccccCCCCc-----ccccccccccccccccC
Q 003144 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDP--TLLFANAGMNQY-KPIFLGTADPNTQ-----LSKLTRACNTQKCIRAG 132 (844)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~d~--~llf~nAGm~qF-kp~flG~~~p~~p-----~~~~~r~~~~QkCiR~g 132 (844)
+.|-+.+-+||.++|-..|..--+.+..-. .-.|+-- .+.| ++++|-++ |.-- .+.+.|+-..-+|.|.
T Consensus 178 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~-~~~~~~~~yLr~S-pqLylk~l~v~G~~rVyeig~~FR~- 254 (493)
T 3a74_A 178 SLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH-HNALDMTLYMRIA-IELHLKRLIVGGLEKVYEIGRVFRN- 254 (493)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE-ETTTTEEEEECSC-SHHHHHHHHHTTCCEEEEEEEEECC-
T ss_pred HHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec-ccCCCceeEEecC-HHHHHHHHhhcccCceEEECccccC-
Confidence 355667778999999888865444432110 0112110 0011 12333322 1000 0224677778899996
Q ss_pred CCCCCCCCCCCCCCcchhhhhcc-ccccccccHHHHHHHHHHHccc
Q 003144 133 GKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTK 177 (844)
Q Consensus 133 GkhnDld~VG~t~rHhTfFEMLG-n~SFgdYfK~eai~~awe~Lt~ 177 (844)
- +. ++||..=|-||. -.+|.|| +|.++.+-+++..
T Consensus 255 ---E---~~--~~rH~pEFT~lE~e~af~d~--~dlm~l~E~ll~~ 290 (493)
T 3a74_A 255 ---E---GI--STRHNPEFTMLELYEAYADF--RDIMKLTENLIAH 290 (493)
T ss_dssp ---C---CC--BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred ---C---CC--CcccCCceeEEEEEecCCCH--HHHHHHHHHHHHH
Confidence 2 33 359999888887 5677786 5566666666553
No 55
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=21.52 E-value=33 Score=39.57 Aligned_cols=99 Identities=20% Similarity=0.285 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhhCCCeEecCCCcccCCCCCcccccccccccc--------cccccccCCCC----ccccccccccccccc
Q 003144 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK--------PIFLGTADPNT----QLSKLTRACNTQKCI 129 (844)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~d~~llf~nAGm~qFk--------p~flG~~~p~~----p~~~~~r~~~~QkCi 129 (844)
+|-+.+-+||.++|-..|..=-+.+. | -.|..-+|+ +.||-+++--. -.+.+.|+-..-+|.
T Consensus 209 ~i~~~iR~ff~~~gFlEVeTPiL~~~--~----gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~F 282 (529)
T 4ex5_A 209 KAIASIRKFMGDADFMEVETPMLHPI--P----GGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNF 282 (529)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESS--C----CSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeecc--C----CCCcccccccccccCCcceecccCHHHHHHHHHhcCCCcEEEeehhe
Confidence 45566778999999888865444432 1 122223332 33333321000 002356777888999
Q ss_pred ccCCCCCCCCCCCCCCCcchhhhhcc-cccccccc-----HHHHHHHHHHHc
Q 003144 130 RAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYF-----KNEAIEWAWELL 175 (844)
Q Consensus 130 R~gGkhnDld~VG~t~rHhTfFEMLG-n~SFgdYf-----K~eai~~awe~L 175 (844)
|.. ++ ++||..=|-||- -.+|.||- -++-|.++|.-+
T Consensus 283 R~E-------~~--~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v 325 (529)
T 4ex5_A 283 RNE-------GV--SPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDA 325 (529)
T ss_dssp CCS-------CC--BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred ecC-------CC--CCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 962 23 369998888875 35677873 344455555543
No 56
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=21.47 E-value=33 Score=38.48 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=23.3
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 003144 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (844)
Q Consensus 288 k~iDTGmGlERl~~vlqg~~snydtd~f 315 (844)
+|=--|+|+|||++++-|.+|.=|+=+|
T Consensus 399 PhgG~glGiDRLvmll~g~~~Irdvi~F 426 (435)
T 2xgt_A 399 PHGGYGLGLERFICWLTNTNHIRDVCLY 426 (435)
T ss_dssp CEEEEEEEHHHHHHHHHTCSCGGGGSSS
T ss_pred CCceEEEhHHHHHHHHcCCCcHHhEecc
Confidence 4567799999999999999998777444
No 57
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=21.05 E-value=1.6e+02 Score=27.03 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=39.5
Q ss_pred cCCCCChHHhHHhhcccCCChhhHHHHHHHcC----ceeChhhHHHHHHHHH
Q 003144 453 QGKVLSGQDAFILWDTYGFPLDLTQLMAEERG----LLVDIEGFNNAMDEAR 500 (844)
Q Consensus 453 ~~~~l~g~~af~Lydt~GfP~dlt~~~a~e~g----~~vd~~~f~~~~~~~~ 500 (844)
+.+.|+|++|-.++-.-|+|.+....|-+... =.+|.++|..+|.--.
T Consensus 45 ~dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li~ 96 (121)
T 3fia_A 45 ISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIK 96 (121)
T ss_dssp BTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHH
T ss_pred CCCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 46799999999999999999999888877653 3578889999886543
No 58
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=20.84 E-value=35 Score=38.87 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=23.5
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 003144 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (844)
Q Consensus 288 k~iDTGmGlERl~~vlqg~~snydtd~f 315 (844)
+|=--|+|+|||+++|-|.+|.=|+=+|
T Consensus 451 PhgG~glGiDRLvmll~g~~~IRdVi~F 478 (487)
T 1eov_A 451 PHAGGGIGLERVVMFYLDLKNIRRASLF 478 (487)
T ss_dssp CEEEEEEEHHHHHHHHTTCSSGGGGCSS
T ss_pred CCeEEEEhHHHHHHHHcCCCcHHheeec
Confidence 5667799999999999999998777444
No 59
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=20.47 E-value=51 Score=26.27 Aligned_cols=29 Identities=7% Similarity=-0.143 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEeC
Q 003144 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (844)
Q Consensus 164 K~eai~~awe~Lt~~l~l~~~rL~vT~~~ 192 (844)
|++-++-.-+.|.+.+|+|++.+||.+.+
T Consensus 16 k~~L~~~it~~~~~~lg~p~~~v~V~i~e 44 (65)
T 3ry0_A 16 VAALGEALTAAAHETLGTPVEAVRVIVEE 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 66667777888889999999999999865
No 60
>1ag7_A Conotoxin GS; neurotoxin, MU-conotoxin, sodium channel blocker, cystine knot motif; HET: HYP CGU; NMR {Conus geographus} SCOP: g.3.6.1
Probab=20.38 E-value=30 Score=24.09 Aligned_cols=13 Identities=62% Similarity=0.976 Sum_probs=10.0
Q ss_pred cccccccccCCCCCCC
Q 003144 123 CNTQKCIRAGGKHNDL 138 (844)
Q Consensus 123 ~~~QkCiR~gGkhnDl 138 (844)
-|.||||-+ |.|+
T Consensus 22 gnpqkciga---hedv 34 (34)
T 1ag7_A 22 GNPQKCIGA---HEDV 34 (34)
T ss_dssp SSSCEEEET---TCCC
T ss_pred CCchhcccc---cccC
Confidence 578999976 7773
Done!