BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003146
(844 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Query: 192 LKHGDDKNLKFALLELRELISAKTVDSEWINEAEIIAVLLNRLGSSKPYNRLIMIQILRN 251
L D + K A +L E+ S + I +A + VL+ L S+ + + L N
Sbjct: 11 LTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 70
Query: 252 LASENADYKEKMANVGSLSALVKSLT-RDVEEQREAVGLLLDLSDLPAVWRRIGRIQGCI 310
+AS + + + + G + LVK LT D E Q+EA L +++ P + G +
Sbjct: 71 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGV 130
Query: 311 VMLVSMLSGNDPVASHDAGKLLNALSSNTQNALH-MAEAGYFKPLVQYL 358
+LV +L+ D +A + L ++S A+ + +AG + LV+ L
Sbjct: 131 EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL 179
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 249 LRNLASENADYKEKMANVGSLSALVKSLT-RDVEEQREAVGLLLDLSDLPAVWRRIGRIQ 307
L N+AS + + + + G + LVK LT D E Q+EA L +++ P +
Sbjct: 110 LANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 169
Query: 308 GCIVMLVSMLSGNDPVASHDAGKLLNALSSNTQNALH-MAEAGYFKPLVQYL 358
G + +LV +L+ D +A + L ++S +A+ + +AG + L + L
Sbjct: 170 GGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221
>pdb|1QI9|A Chain A, X-ray Siras Structure Determination Of A
Vanadium-dependent Haloperoxidase From Ascophyllum
Nodosum At 2.0 A Resolution
pdb|1QI9|B Chain B, X-ray Siras Structure Determination Of A
Vanadium-dependent Haloperoxidase From Ascophyllum
Nodosum At 2.0 A Resolution
Length = 556
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 355 VQYLKEGSDMSKILMATALSRME-LTDQSRASLGEDGAIEPLVRMFR 400
V +++ G+D + A L+ ME + S+G DG ++PL ++FR
Sbjct: 150 VPFMQYGTDDITVTAAANLAGMEGFPNLDAVSIGSDGTVDPLSQLFR 196
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 719 LVKAGAVSPLIQVLEGKEREADETVLGALASLLQ----DE-----TWESGSNYLAKLSGT 769
LV G + PL +LE + E L AL ++L+ D+ ++++ K G
Sbjct: 424 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 483
Query: 770 QAIIKVLESGNAKAQEKALWILERIFRIEEHRV 802
+ I ++ N K EKA I+E F EE V
Sbjct: 484 EKIFNCQQNENDKIYEKAYKIIETYFGEEEDAV 516
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 719 LVKAGAVSPLIQVLEGKEREADETVLGALASLLQ----DE-----TWESGSNYLAKLSGT 769
LV G + PL +LE + E L AL ++L+ D+ ++++ K G
Sbjct: 337 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 396
Query: 770 QAIIKVLESGNAKAQEKALWILERIFRIEEHRV 802
+ I ++ N K EKA I+E F EE V
Sbjct: 397 EKIFNCQQNENDKIYEKAYKIIETYFGEEEDAV 429
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 719 LVKAGAVSPLIQVLEGKEREADETVLGALASLLQ----DE-----TWESGSNYLAKLSGT 769
LV G + PL +LE + E L AL ++L+ D+ ++++ K G
Sbjct: 337 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 396
Query: 770 QAIIKVLESGNAKAQEKALWILERIFRIEEHRV 802
+ I ++ N K EKA I+E F EE V
Sbjct: 397 EKIFNCQQNENDKIYEKAYKIIETYFGEEEDAV 429
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 249 LRNLASENADYKEKMANVGSLSALVKSL--TRDVEEQREAVGLLLDLS 294
LRNL E+ D K ++A + + L++ L TRD+E +++ GLL +LS
Sbjct: 76 LRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 719 LVKAGAVSPLIQVLEGKEREADETVLGALASLLQ----DE-----TWESGSNYLAKLSGT 769
LV G + PL +LE + E L AL ++L+ D+ ++++ K G
Sbjct: 338 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 397
Query: 770 QAIIKVLESGNAKAQEKALWILERIF 795
+ I ++ N K EKA I+E F
Sbjct: 398 EKIFNCQQNENDKIYEKAYKIIETYF 423
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 719 LVKAGAVSPLIQVLEGKEREADETVLGALASLLQ----DE-----TWESGSNYLAKLSGT 769
LV G + PL +LE + E L AL ++L+ D+ ++++ K G
Sbjct: 336 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 395
Query: 770 QAIIKVLESGNAKAQEKALWILERIF 795
+ I ++ N K EKA I+E F
Sbjct: 396 EKIFNCQQNENDKIYEKAYKIIETYF 421
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 719 LVKAGAVSPLIQVLEGKEREADETVLGALASLLQ----DE-----TWESGSNYLAKLSGT 769
LV G + PL +LE + E L AL ++L+ D+ ++++ K G
Sbjct: 338 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 397
Query: 770 QAIIKVLESGNAKAQEKALWILERIF 795
+ I ++ N K EKA I+E F
Sbjct: 398 EKIFNCQQNENDKIYEKAYKIIETYF 423
>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex
With Staurosporine
Length = 287
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 279 DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSN 338
D EE ++ L D P + R IG Q +MLV ++G P+ GK SN
Sbjct: 53 DTEEMMREAQIMHQL-DNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSN 111
Query: 339 TQNALHMAEAGYFKPLVQYLKEGSDMSKILMA 370
LH G ++YL+E + + + L A
Sbjct: 112 VAELLHQVSMG-----MKYLEEKNFVHRDLAA 138
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 279 DVEEQREAVGLLLDLSDLPAVWRRIGRIQGCIVMLVSMLSGNDPVASHDAGKLLNALSSN 338
D EE ++ L D P + R IG Q +MLV ++G P+ GK SN
Sbjct: 379 DTEEMMREAQIMHQL-DNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSN 437
Query: 339 TQNALHMAEAGYFKPLVQYLKEGSDMSKILMA 370
LH G ++YL+E + + + L A
Sbjct: 438 VAELLHQVSMG-----MKYLEEKNFVHRNLAA 464
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,050,029
Number of Sequences: 62578
Number of extensions: 664235
Number of successful extensions: 2109
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2061
Number of HSP's gapped (non-prelim): 56
length of query: 844
length of database: 14,973,337
effective HSP length: 107
effective length of query: 737
effective length of database: 8,277,491
effective search space: 6100510867
effective search space used: 6100510867
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)